Query 045729
Match_columns 218
No_of_seqs 315 out of 2197
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-27 8.7E-32 215.7 17.5 187 29-217 27-237 (968)
2 PLN00113 leucine-rich repeat r 99.8 8.8E-20 1.9E-24 167.5 10.3 138 73-210 140-277 (968)
3 KOG0617 Ras suppressor protein 99.8 5.5E-22 1.2E-26 142.2 -4.8 134 72-209 32-166 (264)
4 PLN03150 hypothetical protein; 99.8 3.2E-18 7E-23 149.7 13.5 154 28-186 369-532 (623)
5 KOG0617 Ras suppressor protein 99.7 1.4E-20 3.1E-25 135.0 -5.8 141 72-216 55-196 (264)
6 PLN03150 hypothetical protein; 99.5 2.6E-14 5.7E-19 125.2 9.9 114 98-211 419-533 (623)
7 KOG4194 Membrane glycoprotein 99.5 1.4E-14 3E-19 121.3 6.7 163 55-218 46-223 (873)
8 KOG4194 Membrane glycoprotein 99.5 1.6E-15 3.5E-20 126.8 0.8 142 73-215 173-340 (873)
9 KOG0444 Cytoskeletal regulator 99.5 8.2E-16 1.8E-20 129.8 -3.0 72 143-216 220-291 (1255)
10 KOG0472 Leucine-rich repeat pr 99.5 1.7E-16 3.6E-21 127.4 -6.9 136 74-215 161-297 (565)
11 KOG0444 Cytoskeletal regulator 99.5 5.5E-16 1.2E-20 130.8 -4.5 136 72-211 221-357 (1255)
12 KOG0472 Leucine-rich repeat pr 99.5 1.3E-15 2.7E-20 122.4 -2.6 134 74-211 389-545 (565)
13 KOG0618 Serine/threonine phosp 99.3 1.7E-13 3.8E-18 119.7 -2.0 128 72-204 358-487 (1081)
14 KOG1259 Nischarin, modulator o 99.3 4.8E-13 1E-17 104.3 0.3 131 73-210 284-416 (490)
15 PF14580 LRR_9: Leucine-rich r 99.3 4.5E-12 9.7E-17 93.4 4.8 122 73-200 19-147 (175)
16 PRK15370 E3 ubiquitin-protein 99.3 1E-11 2.3E-16 110.2 7.9 97 74-182 200-296 (754)
17 PRK15387 E3 ubiquitin-protein 99.2 1.5E-11 3.2E-16 109.1 6.9 104 98-211 343-463 (788)
18 KOG0532 Leucine-rich repeat (L 99.2 1.3E-13 2.8E-18 115.1 -5.5 131 72-209 120-250 (722)
19 PF14580 LRR_9: Leucine-rich r 99.2 1E-11 2.2E-16 91.5 4.8 109 94-208 16-128 (175)
20 PRK15370 E3 ubiquitin-protein 99.2 7.6E-11 1.6E-15 104.8 11.1 124 73-211 178-301 (754)
21 PLN03210 Resistant to P. syrin 99.2 7.7E-11 1.7E-15 110.2 11.7 35 170-204 779-813 (1153)
22 KOG0532 Leucine-rich repeat (L 99.2 7E-13 1.5E-17 110.8 -1.7 138 74-218 99-236 (722)
23 PLN03210 Resistant to P. syrin 99.2 2E-10 4.4E-15 107.4 12.7 124 75-203 591-714 (1153)
24 PRK15387 E3 ubiquitin-protein 99.2 1E-10 2.2E-15 103.9 10.0 127 74-217 223-366 (788)
25 cd00116 LRR_RI Leucine-rich re 99.2 5.1E-12 1.1E-16 102.3 1.1 134 73-206 81-234 (319)
26 KOG4237 Extracellular matrix p 99.2 2.7E-12 5.9E-17 103.1 -1.6 148 56-205 38-200 (498)
27 KOG0618 Serine/threonine phosp 99.1 2.4E-12 5.1E-17 112.8 -2.9 131 72-207 309-466 (1081)
28 cd00116 LRR_RI Leucine-rich re 99.1 1.8E-11 3.9E-16 99.0 0.7 38 169-206 250-291 (319)
29 COG4886 Leucine-rich repeat (L 99.1 5.3E-11 1.2E-15 99.4 3.2 87 73-163 116-203 (394)
30 PF13855 LRR_8: Leucine rich r 99.0 2E-10 4.4E-15 70.0 3.4 60 146-205 2-61 (61)
31 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.1E-15 95.5 3.9 132 74-210 141-272 (394)
32 KOG1259 Nischarin, modulator o 99.0 4.8E-11 1E-15 93.3 -1.3 116 96-217 283-400 (490)
33 PF13855 LRR_8: Leucine rich r 99.0 5.9E-10 1.3E-14 68.0 3.7 57 99-155 3-59 (61)
34 KOG4237 Extracellular matrix p 98.8 4.5E-10 9.8E-15 90.6 -1.2 133 75-210 48-181 (498)
35 PF08263 LRRNT_2: Leucine rich 98.8 7.9E-09 1.7E-13 58.2 4.1 39 30-69 2-43 (43)
36 KOG1859 Leucine-rich repeat pr 98.7 1.3E-10 2.9E-15 100.0 -8.2 127 74-207 165-293 (1096)
37 KOG4579 Leucine-rich repeat (L 98.6 4.2E-09 9E-14 73.5 -1.7 111 72-186 52-163 (177)
38 KOG3207 Beta-tubulin folding c 98.6 1.6E-08 3.6E-13 82.6 1.2 111 96-207 196-315 (505)
39 KOG4658 Apoptotic ATPase [Sign 98.6 5.3E-08 1.2E-12 88.3 4.4 104 98-203 546-652 (889)
40 KOG4579 Leucine-rich repeat (L 98.6 1.4E-09 3.1E-14 75.8 -4.6 130 73-207 27-160 (177)
41 KOG4658 Apoptotic ATPase [Sign 98.5 8.2E-08 1.8E-12 87.1 2.5 128 72-200 544-675 (889)
42 KOG0531 Protein phosphatase 1, 98.4 4.2E-08 9.2E-13 82.6 -0.4 125 75-206 74-199 (414)
43 PF12799 LRR_4: Leucine Rich r 98.4 2.1E-07 4.5E-12 52.5 2.4 36 170-206 2-37 (44)
44 PF12799 LRR_4: Leucine Rich r 98.3 5.7E-07 1.2E-11 50.7 3.3 35 123-158 3-37 (44)
45 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 87.5 -5.1 104 98-207 165-268 (1096)
46 KOG3207 Beta-tubulin folding c 98.3 1.4E-07 3.1E-12 77.3 -0.3 134 72-207 196-340 (505)
47 KOG1909 Ran GTPase-activating 98.3 2.5E-07 5.5E-12 73.8 0.8 133 73-206 92-254 (382)
48 KOG0531 Protein phosphatase 1, 98.2 5.1E-07 1.1E-11 76.0 0.9 111 94-210 69-179 (414)
49 KOG1644 U2-associated snRNP A' 98.1 6.8E-06 1.5E-10 61.2 5.8 101 74-179 43-150 (233)
50 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.2E-10 60.2 5.6 103 96-202 41-149 (233)
51 KOG1909 Ran GTPase-activating 98.0 1.6E-06 3.4E-11 69.4 -0.1 134 72-205 156-310 (382)
52 PRK15386 type III secretion pr 97.9 7.1E-05 1.5E-09 62.2 8.3 115 73-203 52-187 (426)
53 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 8E-11 74.7 0.8 131 73-206 122-263 (699)
54 COG5238 RNA1 Ran GTPase-activa 97.7 2.9E-05 6.4E-10 60.6 3.2 130 73-206 92-255 (388)
55 KOG2739 Leucine-rich acidic nu 97.6 2.9E-05 6.4E-10 59.9 1.8 83 96-182 42-129 (260)
56 PRK15386 type III secretion pr 97.4 0.0006 1.3E-08 56.8 7.2 101 93-207 48-170 (426)
57 KOG2123 Uncharacterized conser 97.3 5E-06 1.1E-10 64.9 -5.6 98 73-175 19-123 (388)
58 KOG2739 Leucine-rich acidic nu 97.3 0.00018 3.9E-09 55.6 2.6 91 113-207 35-130 (260)
59 KOG2982 Uncharacterized conser 97.2 7.6E-05 1.6E-09 59.0 -0.4 85 96-180 70-157 (418)
60 KOG3665 ZYG-1-like serine/thre 97.1 0.00038 8.1E-09 62.2 3.3 109 72-184 147-265 (699)
61 KOG2982 Uncharacterized conser 97.0 0.0006 1.3E-08 54.1 3.2 148 61-208 84-264 (418)
62 PF13306 LRR_5: Leucine rich r 97.0 0.0042 9E-08 43.1 7.0 78 74-154 13-90 (129)
63 KOG2123 Uncharacterized conser 96.9 2.5E-05 5.4E-10 61.1 -5.3 99 96-199 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 96.9 0.0052 1.1E-07 42.6 6.6 121 91-217 6-127 (129)
65 KOG2120 SCF ubiquitin ligase, 96.7 2.5E-05 5.5E-10 61.7 -6.8 56 74-129 186-242 (419)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.0027 5.8E-08 49.9 4.1 132 71-207 56-228 (388)
67 PF00560 LRR_1: Leucine Rich R 96.6 0.001 2.2E-08 31.3 1.1 19 171-190 2-20 (22)
68 KOG2120 SCF ubiquitin ligase, 96.6 0.00022 4.9E-09 56.4 -2.2 127 74-203 211-373 (419)
69 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.4E-08 31.2 0.7 20 195-214 2-21 (22)
70 KOG0473 Leucine-rich repeat pr 95.9 0.00015 3.2E-09 55.5 -6.2 88 92-182 37-124 (326)
71 KOG0473 Leucine-rich repeat pr 95.1 0.00028 6.1E-09 54.0 -7.0 84 72-158 41-124 (326)
72 PF13504 LRR_7: Leucine rich r 95.0 0.016 3.4E-07 25.3 1.3 11 123-133 3-13 (17)
73 smart00369 LRR_TYP Leucine-ric 93.1 0.1 2.2E-06 25.3 2.2 13 122-134 3-15 (26)
74 smart00370 LRR Leucine-rich re 93.1 0.1 2.2E-06 25.3 2.2 13 122-134 3-15 (26)
75 smart00369 LRR_TYP Leucine-ric 92.6 0.1 2.2E-06 25.3 1.7 20 192-211 1-20 (26)
76 smart00370 LRR Leucine-rich re 92.6 0.1 2.2E-06 25.3 1.7 20 192-211 1-20 (26)
77 PF13516 LRR_6: Leucine Rich r 88.5 0.11 2.5E-06 24.6 -0.3 13 122-134 3-15 (24)
78 smart00364 LRR_BAC Leucine-ric 86.0 0.51 1.1E-05 23.0 1.2 17 122-139 3-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 85.7 0.78 1.7E-05 22.4 1.8 15 193-207 2-16 (26)
80 KOG1947 Leucine rich repeat pr 82.1 0.31 6.7E-06 41.5 -0.9 13 144-156 242-254 (482)
81 smart00368 LRR_RI Leucine rich 81.2 1.4 3E-05 21.7 1.7 14 193-206 2-15 (28)
82 PF07172 GRP: Glycine rich pro 77.0 2 4.4E-05 28.3 2.0 24 1-24 1-24 (95)
83 KOG3864 Uncharacterized conser 77.0 0.35 7.6E-06 36.5 -1.8 33 74-106 102-134 (221)
84 KOG1947 Leucine rich repeat pr 73.0 0.86 1.9E-05 38.8 -0.7 13 120-132 242-254 (482)
85 KOG4308 LRR-containing protein 69.5 0.023 5.1E-07 48.8 -10.9 132 75-206 146-303 (478)
86 KOG3864 Uncharacterized conser 65.7 1.1 2.4E-05 33.9 -1.4 83 97-179 101-186 (221)
87 KOG3763 mRNA export factor TAP 58.2 4.9 0.00011 35.1 1.0 11 121-131 244-254 (585)
88 KOG3763 mRNA export factor TAP 42.7 12 0.00026 32.8 1.0 63 72-134 217-283 (585)
89 smart00367 LRR_CC Leucine-rich 38.2 25 0.00054 16.6 1.4 13 192-204 1-13 (26)
90 PF12273 RCR: Chitin synthesis 37.4 37 0.00081 23.6 2.7 21 2-22 1-21 (130)
91 TIGR00864 PCC polycystin catio 30.4 33 0.00071 36.2 1.9 31 127-158 1-32 (2740)
92 TIGR00864 PCC polycystin catio 29.7 38 0.00082 35.8 2.2 31 103-134 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4e-27 Score=215.71 Aligned_cols=187 Identities=33% Similarity=0.617 Sum_probs=132.2
Q ss_pred ChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc
Q 045729 29 LTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN 108 (218)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 108 (218)
.+.|..||++||+++.++...+.+ |+...++|.|.|+.|+. .++++.|++++|++++.+++.+..+++|+.|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 458999999999999766666666 98878999999999985 4689999999999998888888889999999999998
Q ss_pred ccccCCcccC-CCCCCcEEEccCccccc----------------------cCchhhcCCCCCCEEEccCCcccCCCCccc
Q 045729 109 FRGHLPNELG-QLRRLRFIRFGFNKLSG----------------------SIPTWIGVLSKLQTLRLYNNSFTGPIPNSL 165 (218)
Q Consensus 109 l~~~~p~~~~-~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l 165 (218)
+.+.+|..+. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8877876644 66666666666666654 444445555555555555555555555555
Q ss_pred cCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 166 FNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 166 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. ++++++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 5555666666666665555555566666666666666666554443 444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=8.8e-20 Score=167.51 Aligned_cols=138 Identities=33% Similarity=0.548 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
+++++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 34455555555555555555555555566666555555555555555555555555555555555555555555555555
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++|.+++.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 5555555555555555555555555555555555555555555555555555544433
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=5.5e-22 Score=142.24 Aligned_cols=134 Identities=28% Similarity=0.508 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
..+++.+.+++|.++ .+|+.+..+.+|+.|++.+|+++ ++|..++.+++|+.|+++.|++. .+|.+|+.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 567888899999988 78888889999999999999998 88888999999999999999988 8899999999999999
Q ss_pred ccCCcccC-CCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 152 LYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 152 l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
+++|++.. .+|..|..+..|+.|++++|.+. .+|+.++++++|+.|.+++|.+...+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc
Confidence 98888763 24554444444444444444444 44444444444444444444444333
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=3.2e-18 Score=149.68 Aligned_cols=154 Identities=31% Similarity=0.512 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHHHhccCCCCccCCCCCCCCCCC-----ccceeeeCCC----CCcEEEEEcCCCCCcccCCcCCCCCCC
Q 045729 28 NLTADQSALLAFKARVVDYRSVLTNNWSISYPIC-----TWIGISCGSR----HQRVTALNLSDIGLGGTIPPHLGNLTF 98 (218)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~----~~~l~~l~l~~~~l~~~~~~~l~~l~~ 98 (218)
+...|..||..+|.++..+.. .+ |.. ++| .|.|+.|... ...++.|+|++|++.|.+|+.+..+++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 356799999999998864421 24 964 334 7999999531 125889999999999999999999999
Q ss_pred CCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCC-CCCcEEecc
Q 045729 99 LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL-SKLEVFNAM 177 (218)
Q Consensus 99 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~L~ 177 (218)
|+.|++++|.+.|.+|..+..+++|+.|++++|+++|.+|..++.+++|++|++++|.++|.+|..+... .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999887754 467788888
Q ss_pred cCcccccCC
Q 045729 178 YNVIDGNIP 186 (218)
Q Consensus 178 ~N~l~~~~p 186 (218)
+|......|
T Consensus 524 ~N~~lc~~p 532 (623)
T PLN03150 524 DNAGLCGIP 532 (623)
T ss_pred CCccccCCC
Confidence 887554343
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-20 Score=135.00 Aligned_cols=141 Identities=25% Similarity=0.391 Sum_probs=132.6
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc-cCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L 150 (218)
..+++++++++|+++ .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|.+.. .+|..|..++.|+-|
T Consensus 55 l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 578999999999998 89999999999999999999998 899999999999999999999863 688889999999999
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
+++.|.+. .+|..++++.+|+.|.+..|.+- ++|.+++.+..|++|++.+|+++-.+|+++.+.
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 99999999 89999999999999999999998 899999999999999999999999999988764
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=2.6e-14 Score=125.25 Aligned_cols=114 Identities=31% Similarity=0.503 Sum_probs=104.2
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729 98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM 177 (218)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 177 (218)
.++.|++++|.+.|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCccCCCC-CCCCEEEccCCcCcccCCC
Q 045729 178 YNVIDGNIPSRIGNF-SSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 178 ~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~ 211 (218)
+|+++|.+|..++.. .++..+++.+|......|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999988764 4678999999975544444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-14 Score=121.31 Aligned_cols=163 Identities=20% Similarity=0.202 Sum_probs=119.8
Q ss_pred CCCCCCCccceeeeCCC--------------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCC
Q 045729 55 SISYPICTWIGISCGSR--------------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQL 120 (218)
Q Consensus 55 ~~~~~~c~w~gv~c~~~--------------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 120 (218)
++.+++|.-.-..|+.+ ....+.||+++|.+...-+..|.++++|+++++.+|.++ .+|......
T Consensus 46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 45557777666667532 245678999999998777777889999999999999998 888765556
Q ss_pred CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729 121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL 200 (218)
Q Consensus 121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 200 (218)
.+++.|++.+|.++..-.+.+..++.|+++|++.|.++..--..+..-.++++|+|++|.++..-...|..+.+|..|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 67888888888887444556777788888888888887333344555567888888888887555556777777777778
Q ss_pred cCCcCcccCCC-CCCCCCC
Q 045729 201 GYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 201 ~~N~l~~~~p~-~~~l~~L 218 (218)
+.|+++..++. |.+|++|
T Consensus 205 srNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred ccCcccccCHHHhhhcchh
Confidence 88877776665 5555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-15 Score=126.83 Aligned_cols=142 Identities=23% Similarity=0.250 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccc------------------
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKL------------------ 133 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l------------------ 133 (218)
.+++.|+|++|.++..-..+|..+.+|.+|.+++|.++ .+|. .|.++++|+.|++.+|++
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 45556666666655444445555555555555555555 3332 344455555555555554
Q ss_pred ------cccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 134 ------SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 134 ------~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
...-...|..+.++++|+++.|+++..--.++.++.+|++|++++|.+...-++.|...++|++|+|+.|.++.
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 32222346667788888888888875556677889999999999999987778888899999999999999998
Q ss_pred cCCC-CCCC
Q 045729 208 LLTI-FGRL 215 (218)
Q Consensus 208 ~~p~-~~~l 215 (218)
..+. |..|
T Consensus 332 l~~~sf~~L 340 (873)
T KOG4194|consen 332 LDEGSFRVL 340 (873)
T ss_pred CChhHHHHH
Confidence 8775 5444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=8.2e-16 Score=129.78 Aligned_cols=72 Identities=26% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729 143 VLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
.+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+++ .+....+.+.+|+.|+++.|+++..|..+.+|+
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 3344444555555555 55666666666666666666665 333333444445555555555554444444443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=1.7e-16 Score=127.41 Aligned_cols=136 Identities=26% Similarity=0.361 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
++..+++.+|.+. .+|+....++.|++++..+|-++ .+|+.++.+.+|..|++.+|++. .+| .|..+..|.+++++
T Consensus 161 ~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 161 KLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence 3445555566555 33333333666666666666665 66666777777777777777766 666 46666667777777
Q ss_pred CCcccCCCCcccc-CCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCC
Q 045729 154 NNSFTGPIPNSLF-NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL 215 (218)
Q Consensus 154 ~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l 215 (218)
.|.+. .+|.... +++++.+||+.+|+++ ..|.+++.+++|..||+++|.+++.++.+|.|
T Consensus 237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred ccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence 77666 5665554 7778888888888887 77888888888888888888888888777776
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=5.5e-16 Score=130.79 Aligned_cols=136 Identities=27% Similarity=0.349 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
..++..+|+|.|++. .+|+++.++++|+.|++++|.++ ++.-....+.+|++|++++|+++ .+|..++.++.|+.|.
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 345666666666666 56666666666666666666666 44444455556666666666666 5666666666666666
Q ss_pred ccCCccc-CCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 152 LYNNSFT-GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 152 l~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
+.+|+++ ..+|..++.+.+|+++..++|.+. .+|+.++.+.+|+.|.|+.|++...|.+
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhh
Confidence 6555543 135555555555555555555554 4555555555555555555555544443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.3e-15 Score=122.42 Aligned_cols=134 Identities=30% Similarity=0.422 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCCc-----------------------ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC
Q 045729 74 RVTALNLSDIGLG-----------------------GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130 (218)
Q Consensus 74 ~l~~l~l~~~~l~-----------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 130 (218)
-|+.++++.|++. +.+|..++.+++|..|++++|-+. .+|..++.+..|+.++++.
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 3788899888765 234444666788888888888887 7888888888888888888
Q ss_pred ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 131 NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 131 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
|+|. .+|..+..+..++++-.++|++....|..+.++.+|..||+.+|.+. .+|+.+++|.+|++|++.+|++. .|+
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCH
Confidence 8887 78887777777888777788888555555889999999999999998 89999999999999999999998 454
Q ss_pred C
Q 045729 211 I 211 (218)
Q Consensus 211 ~ 211 (218)
+
T Consensus 545 ~ 545 (565)
T KOG0472|consen 545 H 545 (565)
T ss_pred H
Confidence 4
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-13 Score=119.75 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
...++.|.+.+|.++...-+.+.++.+|+.|++++|++. .+|.. +.++..|+.|++++|+++ .+|..+..+..|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 356788899999999887778899999999999999998 77764 678999999999999999 999999999999999
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCc
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 204 (218)
...+|++. .+| .+..+++|+.+|++.|+++- .+|.... .++|++||+++|.
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 99999998 788 78899999999999999873 3443332 2899999999996
No 14
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=4.8e-13 Score=104.34 Aligned_cols=131 Identities=27% Similarity=0.336 Sum_probs=112.1
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
..++.+|+++|.++ .+..+..-.+.++.|++++|.+. .+.. +..+++|+.||+++|.++ .+..+-..+.+.++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 56889999999998 78888888899999999999998 5544 788999999999999998 77666678889999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCC--ccCCCCCCCCEEEccCCcCcccCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++|.+. .+ ..+..+.+|..||+++|++. .+. ..+++++.|+++.|.+|++.+.+.
T Consensus 360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHh-hh-hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccch
Confidence 999887 33 45778899999999999987 332 478999999999999999987654
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=4.5e-12 Score=93.40 Aligned_cols=122 Identities=30% Similarity=0.319 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhh-cCCCCCCEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTL 150 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L 150 (218)
.+++.|++++|.++. +. .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 357889999998873 32 344 5788899999999998 554 4777889999999999998 665544 368899999
Q ss_pred EccCCcccCC-CCccccCCCCCcEEecccCcccccCCc----cCCCCCCCCEEEc
Q 045729 151 RLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIPS----RIGNFSSPFILNL 200 (218)
Q Consensus 151 ~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L 200 (218)
++++|++... .-..+..+++|++|++.+|.++. .+. .+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 9999988732 12456678899999999998873 332 2456788888874
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1e-11 Score=110.22 Aligned_cols=97 Identities=24% Similarity=0.435 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
.++.|++++|.++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 3444555555444 3333322 34555555555544 3443322 23444555555444 4444332 245555555
Q ss_pred CCcccCCCCccccCCCCCcEEecccCccc
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVID 182 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 182 (218)
+|.++ .+|..+. ++|+.|++++|+++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccc
Confidence 55554 3444332 24555555555544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=1.5e-11 Score=109.11 Aligned_cols=104 Identities=26% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCEEEccCCcccccCCcccCC-----------------CCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCC
Q 045729 98 FLVSLDVAHNNFRGHLPNELGQ-----------------LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP 160 (218)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 160 (218)
+|+.|++++|+++ .+|..... ..+|+.|++++|.++ .+|.. .++|+.|++++|.++ .
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 5677777777776 44432111 124566666666666 44532 245777777777776 4
Q ss_pred CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 161 IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 161 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
+|.. ..+|+.|++++|+++ .+|..++++++|+.|++++|++++..+.
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5543 246778888888887 7888889999999999999999876543
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.3e-13 Score=115.09 Aligned_cols=131 Identities=29% Similarity=0.426 Sum_probs=104.1
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
...++.+|++.|+++ .+|..++.++ |+.|.+++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.+|+.+.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 456677788888877 6777666655 778888888887 77777777778888888888887 7788888888888888
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
+..|++. .+|+.+..+ .|..||++.|+++ .+|-.|.+|+.|++|-|.+|++...+
T Consensus 196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence 8888887 677777743 5888999999988 88999999999999999999988643
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1e-11 Score=91.54 Aligned_cols=109 Identities=24% Similarity=0.328 Sum_probs=43.5
Q ss_pred CCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccc-cCCCCC
Q 045729 94 GNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSL-FNLSKL 171 (218)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L 171 (218)
.+...+++|++++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34456899999999998 454 354 5789999999999998 664 5788999999999999999 565555 368999
Q ss_pred cEEecccCcccccCC--ccCCCCCCCCEEEccCCcCccc
Q 045729 172 EVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 172 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
+.|++++|++.. +. ..+..+++|+.|++.+|+++..
T Consensus 91 ~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCcccch
Confidence 999999999973 32 3566889999999999998854
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=7.6e-11 Score=104.82 Aligned_cols=124 Identities=26% Similarity=0.375 Sum_probs=103.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
.+.+.+++++++++ .+|..+. ++++.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35788999999988 5776654 58999999999999 7887654 58999999999999 7887654 47999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCccc
Confidence 999998 7887764 58999999999998 6887664 5899999999999876543
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=7.7e-11 Score=110.23 Aligned_cols=35 Identities=17% Similarity=-0.033 Sum_probs=21.6
Q ss_pred CCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729 170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
+|+.|++++|...+.+|..++++++|+.|++++|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 45555555555444566666677777777777654
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=7e-13 Score=110.83 Aligned_cols=138 Identities=30% Similarity=0.457 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
.++.+.+..|.+. .+|..+.++..|+.++++.|+++ .+|..++.++ |+.|-+++|+++ .+|..++...+|..+|.+
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 3556677777776 78888889999999999999998 7888887776 888999999998 889888888889999999
Q ss_pred CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
.|.+. .+|..++.+.+|+.|++..|++. .+|++++.+ .|..||++.|++..++-.|.+|++|
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHL 236 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhh
Confidence 99988 78888899999999999999988 788888854 5788999999998877778888765
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.20 E-value=2e-10 Score=107.43 Aligned_cols=124 Identities=26% Similarity=0.292 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729 75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (218)
++.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|++++++++.....+|. +..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444443 344433 3455555555555555 4454555555555555555433224443 44555555555555
Q ss_pred CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 203 (218)
|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 54333555555555555555555543333444433 3444444444444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=1e-10 Score=103.87 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
+++.|++++|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|++++|.++ .+|.. .++|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 4666666666666 34432 356677777777766 45532 345666677776666 45542 2456777778
Q ss_pred CCcccCCCCccccCCCCCcEEecccCcccccCCccC---C----------CC----CCCCEEEccCCcCcccCCCCCCCC
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI---G----------NF----SSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~----------~l----~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
+|+++ .+|.. .++|+.|++++|++++ +|... . .+ .+|++|++++|++++.++....++
T Consensus 291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~ 365 (788)
T PRK15387 291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELY 365 (788)
T ss_pred CCccc-ccccc---ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccc
Confidence 88777 55542 3678899999998874 44321 1 11 267888888888887665555554
Q ss_pred C
Q 045729 217 L 217 (218)
Q Consensus 217 ~ 217 (218)
.
T Consensus 366 ~ 366 (788)
T PRK15387 366 K 366 (788)
T ss_pred e
Confidence 4
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=5.1e-12 Score=102.27 Aligned_cols=134 Identities=28% Similarity=0.339 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCC---CCEEEccCCcccc----cCCcccCCC-CCCcEEEccCcccccc----Cchh
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTF---LVSLDVAHNNFRG----HLPNELGQL-RRLRFIRFGFNKLSGS----IPTW 140 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~~ 140 (218)
++++.++++++.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 45666666666655333333333332 6666666665542 112223334 5556666666655521 2223
Q ss_pred hcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729 141 IGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 141 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 34445555555555555421 122233344555555555554421 2223344455555555555544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=2.7e-12 Score=103.15 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=122.6
Q ss_pred CCCCCCcc---ceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCC
Q 045729 56 ISYPICTW---IGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRL 123 (218)
Q Consensus 56 ~~~~~c~w---~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 123 (218)
+..+.|+- .-|.|+.+ +...+.|+|..|+|+...+..|..+++|+.|++++|+|+..-|++|.+++++
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l 117 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASL 117 (498)
T ss_pred CCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhh
Confidence 33344554 44677532 4688999999999996666789999999999999999998888899999998
Q ss_pred cEEEccC-ccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCc-cCCCCCCCCEEEc
Q 045729 124 RFIRFGF-NKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPS-RIGNFSSPFILNL 200 (218)
Q Consensus 124 ~~L~l~~-n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L 200 (218)
..|-+.+ |+|+ .+|. .|+.+.+++.|.+.-|++.-...+.+..++++..|.+.+|.+. .+++ .+..+.+++.+++
T Consensus 118 ~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 118 LSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhh
Confidence 7776655 9999 6665 7889999999999999988566778889999999999999998 6666 7889999999999
Q ss_pred cCCcC
Q 045729 201 GYNNL 205 (218)
Q Consensus 201 ~~N~l 205 (218)
..|++
T Consensus 196 A~np~ 200 (498)
T KOG4237|consen 196 AQNPF 200 (498)
T ss_pred hcCcc
Confidence 99874
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=2.4e-12 Score=112.81 Aligned_cols=131 Identities=25% Similarity=0.427 Sum_probs=110.6
Q ss_pred CCcEEEEEcCCCCCcccCCcCCC--------------------------CCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLG--------------------------NLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~--------------------------~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 125 (218)
.+.+++|++..|++. .+|+.+. .+..|+.|++.+|.++...-+.+.++++|+.
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 467889999999876 3333211 1345777888899998776667889999999
Q ss_pred EEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729 126 IRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 126 L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
|++++|++. .+|. .+.++..|++|++++|+++ .+|..+.+++.|++|...+|.+. .+| .+..++.|+.+|++.|+
T Consensus 388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 999999998 7776 5678899999999999999 89999999999999999999998 788 88999999999999999
Q ss_pred Ccc
Q 045729 205 LQG 207 (218)
Q Consensus 205 l~~ 207 (218)
++.
T Consensus 464 L~~ 466 (1081)
T KOG0618|consen 464 LSE 466 (1081)
T ss_pred hhh
Confidence 875
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.8e-11 Score=99.02 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=16.9
Q ss_pred CCCcEEecccCcccc----cCCccCCCCCCCCEEEccCCcCc
Q 045729 169 SKLEVFNAMYNVIDG----NIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 169 ~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+.|+.|++++|.++. .+...+..+++|+++++++|.+.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 345555555554431 12222333345555555555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=5.3e-11 Score=99.37 Aligned_cols=87 Identities=33% Similarity=0.586 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCC-CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
..++.+++.+|.++ .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|...+..+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 34666666666665 4555444453 6666666666665 55445556666666666666665 5555444555555555
Q ss_pred ccCCcccCCCCc
Q 045729 152 LYNNSFTGPIPN 163 (218)
Q Consensus 152 l~~n~l~~~~p~ 163 (218)
+++|.++ .+|.
T Consensus 193 ls~N~i~-~l~~ 203 (394)
T COG4886 193 LSGNKIS-DLPP 203 (394)
T ss_pred ccCCccc-cCch
Confidence 5555555 3443
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2e-10 Score=70.05 Aligned_cols=60 Identities=33% Similarity=0.434 Sum_probs=32.2
Q ss_pred CCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729 146 KLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205 (218)
Q Consensus 146 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 205 (218)
+|++|++++|+++...+..+.++++|++|++++|.++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533333445555555555555555544444555666666666666543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2.4e-10 Score=95.49 Aligned_cols=132 Identities=33% Similarity=0.494 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
+++.+++++|.+. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|++. .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 6777777777776 55556677778888888888777 66665556777777888888777 777765555667777777
Q ss_pred CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
+|.+. ..+..+.++..+..+.+.+|++. .++..++.++++++|++++|.++...+
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence 77544 45566677777777777777776 446667777778888888887776544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=4.8e-11 Score=93.29 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=93.6
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEe
Q 045729 96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFN 175 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 175 (218)
-..|+++|+++|.++ .+..+..-.|.++.|++++|.+. .+.. +..+++|+.||+++|.++ .+..+-..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 457899999999998 78888888899999999999998 5544 788999999999999988 5555555778899999
Q ss_pred cccCcccccCCccCCCCCCCCEEEccCCcCccc--CCCCCCCCC
Q 045729 176 AMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL--LTIFGRLRL 217 (218)
Q Consensus 176 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~l~~ 217 (218)
+++|.+. .+ ..++.+-+|..||+++|++... +..+|+||.
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 9999886 33 3677788999999999998754 334666654
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=5.9e-10 Score=67.95 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 99 LVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 99 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
|++|++++|+++..-+..|..+++|++|++++|.++...|..|..+++|+++++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222223334444444444444444222223344444444444443
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=4.5e-10 Score=90.59 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729 75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (218)
-..++-++.+++ .+|..+. +..+.+++..|+|+..-|..|+.+++|+.||++.|.|+..-|..|..+.++..|-+.+
T Consensus 48 g~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 48 GGIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred CceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 345677888877 6776654 5678999999999944445799999999999999999977888999999887776666
Q ss_pred -CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 155 -NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 155 -n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
|+|+..-...|.++.+++.|.+.-|++.....+.+..+++++.|.+-+|.+..+..
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 89994334567899999999999999997777789999999999999998775443
No 35
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=7.9e-09 Score=58.18 Aligned_cols=39 Identities=38% Similarity=0.816 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhccC-CCCccCCCCCCC--CCCCccceeeeC
Q 045729 30 TADQSALLAFKARVVD-YRSVLTNNWSIS--YPICTWIGISCG 69 (218)
Q Consensus 30 ~~~~~~l~~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 69 (218)
++|..||++||+++.+ +...+.+ |+.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 5799999999999984 5566777 9887 699999999995
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=1.3e-10 Score=100.04 Aligned_cols=127 Identities=28% Similarity=0.356 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchh-hcCCCCCCEEEc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKLQTLRL 152 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l 152 (218)
.+...+.++|.+. .+..++.-++.++.|++++|+++ .+. .+..+++|++||+++|.+. .+|.- ...+ .|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 4566778888877 66777777888899999999887 333 5778888999999999888 67652 2233 3888899
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccC-CccCCCCCCCCEEEccCCcCcc
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI-PSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
++|.++ .+ ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|+|.||++.-
T Consensus 240 rnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 988887 33 34678888889999998876421 1234566788888888888753
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.58 E-value=4.2e-09 Score=73.47 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCCcccCCcCC-CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHL-GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
..+++.+++++|.+. ..|+.| ..++.++.+++++|.+. .+|.++..++.|+.++++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 356667777777766 344433 34556777777777776 67777777777777777777776 666666666777777
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 186 (218)
+..+|.+. .+|-.+..-...-..++.++.+.+.-+
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 77766665 444443222222233444444444333
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.6e-08 Score=82.60 Aligned_cols=111 Identities=22% Similarity=0.174 Sum_probs=61.6
Q ss_pred CCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCC--ccccCCCCCc
Q 045729 96 LTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLFNLSKLE 172 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~ 172 (218)
+++|+.|.++.|+++- .+-.....+|+|+.|++..|...+.-......+..|++||+++|++. ..+ .....++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 4455555555555541 11122234556666666665311111112233456777777777765 333 3455677788
Q ss_pred EEecccCccccc-CCcc-----CCCCCCCCEEEccCCcCcc
Q 045729 173 VFNAMYNVIDGN-IPSR-----IGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 173 ~L~L~~N~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~ 207 (218)
.|+++.+.+... .|+. ...+++|++|++..|++..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 888888777632 2322 2456788888888888743
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=5.3e-08 Score=88.29 Aligned_cols=104 Identities=25% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCCEEEccCCc--ccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEE
Q 045729 98 FLVSLDVAHNN--FRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVF 174 (218)
Q Consensus 98 ~L~~L~l~~n~--l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 174 (218)
.|++|-+..|. +. .++. .|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+.++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 56666666664 33 3333 2555666666666665544566666666666666666666666 666666666666666
Q ss_pred ecccCcccccCCccCCCCCCCCEEEccCC
Q 045729 175 NAMYNVIDGNIPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 175 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 203 (218)
++..+.-...+|.....+.+|++|.+...
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66666544344444455666666665543
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.56 E-value=1.4e-09 Score=75.79 Aligned_cols=130 Identities=22% Similarity=0.320 Sum_probs=97.8
Q ss_pred CcEEEEEcCCCCCcccCC---cCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCC
Q 045729 73 QRVTALNLSDIGLGGTIP---PHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQ 148 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 148 (218)
...-.++++.+.+- .++ ..+....+|+..++++|.+. .+|+.|. ..+.++.+++++|.++ .+|..+..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34556777777654 233 33556678888999999998 7888776 4568999999999999 8999999999999
Q ss_pred EEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 149 TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 149 ~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
.++++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+-.-...-..++..+++.+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 9999999999 77888888999999999999887 666553222222233345555554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=8.2e-08 Score=87.09 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCCC--CcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCE
Q 045729 72 HQRVTALNLSDIG--LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 149 (218)
Q Consensus 72 ~~~l~~l~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 149 (218)
.+++++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|.+++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4578888888886 44223334778999999999998777799999999999999999999999 99999999999999
Q ss_pred EEccCCcccCCCCccccCCCCCcEEecccCccc--ccCCccCCCCCCCCEEEc
Q 045729 150 LRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID--GNIPSRIGNFSSPFILNL 200 (218)
Q Consensus 150 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L 200 (218)
|++.++.....+|.....+.+|++|.+...... ...-..+.++.+|+.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999998766566676677999999998765422 112233344455554443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=4.2e-08 Score=82.55 Aligned_cols=125 Identities=29% Similarity=0.419 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729 75 VTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 75 l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (218)
+..+++..|.+.. .-..+..+.+++.+++.+|.+. .+...+..+++|++|++++|+++ .+ ..+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cc-cchhhccchhhheecc
Confidence 3334444444432 2222445555555556555555 23322444555566666666555 22 2234445555555666
Q ss_pred CcccCCCCccccCCCCCcEEecccCcccccCCcc-CCCCCCCCEEEccCCcCc
Q 045729 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR-IGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~ 206 (218)
|.++ .+ ..+..+..|+.+++++|.+. .+... ...+.+++.+++.+|.+.
T Consensus 150 N~i~-~~-~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLIS-DI-SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccch-hc-cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 5555 22 22333555555555555555 22221 244455555555555443
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.40 E-value=2.1e-07 Score=52.53 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555544
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=5.7e-07 Score=50.70 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=13.7
Q ss_pred CcEEEccCccccccCchhhcCCCCCCEEEccCCccc
Q 045729 123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 158 (218)
Q Consensus 123 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 158 (218)
|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 33333444444444444444433
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.6e-08 Score=87.49 Aligned_cols=104 Identities=25% Similarity=0.335 Sum_probs=81.3
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729 98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM 177 (218)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 177 (218)
.|.+.+.++|.+. .+..++.-++.++.|++++|+++ .. +.+..++.|++||+++|.+. .+|.--..-..|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4566677778877 66667777889999999999998 44 37888999999999999998 555422222349999999
Q ss_pred cCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 178 YNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 178 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+|.++ ++ ..+.++++|+.||+++|-+.+
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhhhc
Confidence 99987 33 367899999999999997765
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.4e-07 Score=77.26 Aligned_cols=134 Identities=20% Similarity=0.185 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc--hhhcCCCCCC
Q 045729 72 HQRVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ 148 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~ 148 (218)
.++++.|.++.++++.. +...+..+++|+.|++..|...........-+..|+.||+++|.+. ..+ ...+.++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 45677777777777622 3334556899999999999532233333445678999999999987 555 4567889999
Q ss_pred EEEccCCcccCC-CCcc-----ccCCCCCcEEecccCcccccCC--ccCCCCCCCCEEEccCCcCcc
Q 045729 149 TLRLYNNSFTGP-IPNS-----LFNLSKLEVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 149 ~L~l~~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~ 207 (218)
.|+++.+.+... .|+. ....++|++|++..|++. ..+ ..+..+++|+.|.+..|.++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 999999988732 2332 245789999999999986 333 234456777888877887653
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=2.5e-07 Score=73.78 Aligned_cols=133 Identities=21% Similarity=0.213 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCCCcccCCc----CCCCCCCCCEEEccCCcccccC-------------CcccCCCCCCcEEEccCccccc
Q 045729 73 QRVTALNLSDIGLGGTIPP----HLGNLTFLVSLDVAHNNFRGHL-------------PNELGQLRRLRFIRFGFNKLSG 135 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~-------------p~~~~~l~~L~~L~l~~n~l~~ 135 (218)
++++.+|||+|.+...-++ -+.+...|+.|++.+|.+...- ......-+.|+++...+|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle- 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE- 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-
Confidence 5899999999987644333 2456788999999998886211 112344578999999999886
Q ss_pred cCc-----hhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccC
Q 045729 136 SIP-----TWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGY 202 (218)
Q Consensus 136 ~~p-----~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~ 202 (218)
..+ ..+...+.|+.+.+++|.+... +...+..+++|++||+.+|-++.. +...++.+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 333 3456677888888888877511 223456788888888888877621 334556677788888877
Q ss_pred CcCc
Q 045729 203 NNLQ 206 (218)
Q Consensus 203 N~l~ 206 (218)
+.+.
T Consensus 251 cll~ 254 (382)
T KOG1909|consen 251 CLLE 254 (382)
T ss_pred cccc
Confidence 7654
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=5.1e-07 Score=76.04 Aligned_cols=111 Identities=28% Similarity=0.371 Sum_probs=89.9
Q ss_pred CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729 94 GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV 173 (218)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 173 (218)
..+..++.+.++.|.+. .+-..+..+++|..+++..|++. .+...+..+++|++|++++|.|+. + ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-c-cchhhccchhh
Confidence 35677788888889887 44445778899999999999998 555547789999999999999983 3 34567778999
Q ss_pred EecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 174 FNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 174 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
|++++|.++ .+. .+..++.|+.+++++|.+....+
T Consensus 145 L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 145 LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred heeccCcch-hcc-CCccchhhhcccCCcchhhhhhh
Confidence 999999998 443 56668999999999999887655
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=6.8e-06 Score=61.19 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=60.9
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCc--hhhcCCCCCCEE
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQTL 150 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L 150 (218)
....+|+++|.+.. ...|..++.|.+|.+.+|.|+ .+.+.+. -+++|+.|.+.+|.+. .+. ..+..+++|++|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45667777777642 223566677777777777777 3333333 3566777777777765 322 134566777777
Q ss_pred EccCCcccCCCC----ccccCCCCCcEEecccC
Q 045729 151 RLYNNSFTGPIP----NSLFNLSKLEVFNAMYN 179 (218)
Q Consensus 151 ~l~~n~l~~~~p----~~l~~l~~L~~L~L~~N 179 (218)
.+-+|.++. .+ --+..+++|+.||+..-
T Consensus 119 tll~Npv~~-k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhc-ccCceeEEEEecCcceEeehhhh
Confidence 777776652 21 12446677777776553
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=1e-05 Score=60.24 Aligned_cols=103 Identities=25% Similarity=0.302 Sum_probs=78.5
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc-CCCCCCEEEccCCcccCC-CCccccCCCCCcE
Q 045729 96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLRLYNNSFTGP-IPNSLFNLSKLEV 173 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~ 173 (218)
..+...+|+++|.+. .++ .|..++.|.+|.+++|+++ .+.+.+. .+++|..|.+.+|.+... .-..+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 346678999999987 443 4778999999999999999 5554444 457899999999988721 1233567899999
Q ss_pred EecccCcccccCC----ccCCCCCCCCEEEccC
Q 045729 174 FNAMYNVIDGNIP----SRIGNFSSPFILNLGY 202 (218)
Q Consensus 174 L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~ 202 (218)
|.+-+|.++ ..+ -.+..+++|+.||++.
T Consensus 118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 999999887 222 2457889999999765
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=1.6e-06 Score=69.37 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cch
Q 045729 72 HQRVTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IPT 139 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~ 139 (218)
.+.++++...+|++... +...+...+.|+.+.+..|.+... +-..+..+++|+.||+.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 57888888888887532 223355567889999988887621 223466789999999999988732 334
Q ss_pred hhcCCCCCCEEEccCCcccCCCCc----ccc-CCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcC
Q 045729 140 WIGVLSKLQTLRLYNNSFTGPIPN----SLF-NLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNL 205 (218)
Q Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~p~----~l~-~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 205 (218)
.+..+++|+.+++++|.+...-.. .+. ..++|+++.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 566778899999999988633222 222 467899999999988621 223345678899999999988
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=7.1e-05 Score=62.22 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc-cccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN-KLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ 151 (218)
..++.|+++++.++ .+| .+ -.+|++|+++++.--..+|..+ .++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 44667777777665 444 12 1346777776533222455433 245666666666 343 4443 234444
Q ss_pred ccCCccc--CCCCccccCC------------------CCCcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729 152 LYNNSFT--GPIPNSLFNL------------------SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 152 l~~n~l~--~~~p~~l~~l------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 203 (218)
+..+... +.+|..+..+ ++|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4433221 1233332211 35667777766654 3343332 36666666654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=3.7e-06 Score=74.71 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=89.2
Q ss_pred CcEEEEEcCCCCCccc-CC-cCCCCCCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCE
Q 045729 73 QRVTALNLSDIGLGGT-IP-PHLGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQT 149 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~-~~-~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 149 (218)
.++++||+++...-.. -| .--..+|.|+.|.+.+-.+.. .+-.-..++++|..||++++.++ .+ .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 5788888888653211 11 112357889999988876642 22233457889999999999988 44 77889999999
Q ss_pred EEccCCcccC-CCCccccCCCCCcEEecccCcccccCC-------ccCCCCCCCCEEEccCCcCc
Q 045729 150 LRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIP-------SRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 150 L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-------~~~~~l~~L~~L~L~~N~l~ 206 (218)
|.+.+=.+.. ..-..+.++++|++||+|..... ..+ +.-..+|+||.||.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9887766552 12235678999999999887654 222 11235789999999987654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=2.9e-05 Score=60.55 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCCCcccCCcC----CCCCCCCCEEEccCCcccccCCccc-------------CCCCCCcEEEccCccccc
Q 045729 73 QRVTALNLSDIGLGGTIPPH----LGNLTFLVSLDVAHNNFRGHLPNEL-------------GQLRRLRFIRFGFNKLSG 135 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~n~l~~ 135 (218)
++++.+++|+|.+....|+. +++-+.|++|.+++|.+...-...+ ..-|.|++....+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 78888999999887665553 5667888899999888752111111 23477888888888887
Q ss_pred cCchh-----hcCCCCCCEEEccCCcccCCCCc--------cccCCCCCcEEecccCccccc----CCccCCCCCCCCEE
Q 045729 136 SIPTW-----IGVLSKLQTLRLYNNSFTGPIPN--------SLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFIL 198 (218)
Q Consensus 136 ~~p~~-----~~~l~~L~~L~l~~n~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L 198 (218)
..|.. +..-..|+++.+.+|.|. |. .+..+.+|++||+..|-++-. +...++.++.|+.|
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 44432 233357888888888776 43 234567899999999987621 23445667778888
Q ss_pred EccCCcCc
Q 045729 199 NLGYNNLQ 206 (218)
Q Consensus 199 ~L~~N~l~ 206 (218)
.+.+|-++
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 88877654
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.60 E-value=2.9e-05 Score=59.90 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=38.3
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc--cccccCchhhcCCCCCCEEEccCCcccCCCCcc---ccCCCC
Q 045729 96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN--KLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS---LFNLSK 170 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~ 170 (218)
+..|+.+.+.+..++ .+ ..+..+++|+.|.++.| ++.+.++-....+++|+++++++|++.. +.+ +..+.+
T Consensus 42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 334444444444443 11 12344555555666555 3333333333344556666666665541 222 233445
Q ss_pred CcEEecccCccc
Q 045729 171 LEVFNAMYNVID 182 (218)
Q Consensus 171 L~~L~L~~N~l~ 182 (218)
|..|++.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 555566555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.0006 Score=56.85 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=67.8
Q ss_pred CCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC-ccccccCchhhcCCCCCCEEEccCC-cccCCCCccccCCCC
Q 045729 93 LGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNN-SFTGPIPNSLFNLSK 170 (218)
Q Consensus 93 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~ 170 (218)
+..+.+++.|++++|.++ .+|. + ..+|+.|.+++ +.++ .+|..+. ++|++|++++| .+. .+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------ 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPES------ 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccc------
Confidence 334578999999999888 6772 2 34699999987 4454 7776552 58999999998 554 56643
Q ss_pred CcEEecccCccc--ccCCccCCCC------------------CCCCEEEccCCcCcc
Q 045729 171 LEVFNAMYNVID--GNIPSRIGNF------------------SSPFILNLGYNNLQG 207 (218)
Q Consensus 171 L~~L~L~~N~l~--~~~p~~~~~l------------------~~L~~L~L~~N~l~~ 207 (218)
|+.|++..+... +.+|..+..+ ++|++|++++|....
T Consensus 114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 555556554421 2455444322 378999999887554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=5e-06 Score=64.91 Aligned_cols=98 Identities=24% Similarity=0.309 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch--hhcCCCCCCEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKLQTL 150 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L 150 (218)
.+++.|+..++++...- ....|+.|++|.|+-|.|+. +. .+..+++|+.|+|..|.|. .+.+ .+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 45556666666655321 13456777777777777762 22 2556777777777777776 4433 44567777777
Q ss_pred EccCCcccCCCCcc-----ccCCCCCcEEe
Q 045729 151 RLYNNSFTGPIPNS-----LFNLSKLEVFN 175 (218)
Q Consensus 151 ~l~~n~l~~~~p~~-----l~~l~~L~~L~ 175 (218)
++..|...|.-+.. +..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777665544322 33456666654
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=0.00018 Score=55.61 Aligned_cols=91 Identities=21% Similarity=0.166 Sum_probs=65.3
Q ss_pred CCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC--cccCCCCccccCCCCCcEEecccCcccccCCcc--
Q 045729 113 LPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN--SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR-- 188 (218)
Q Consensus 113 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-- 188 (218)
+......+..|+.+.+.+..++ .+ ..+..+++|+.|.++.| ++.+.++.-...+++|+++++++|++. ++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence 3333344566777777776665 33 34667899999999999 666556555566799999999999987 2333
Q ss_pred -CCCCCCCCEEEccCCcCcc
Q 045729 189 -IGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 189 -~~~l~~L~~L~L~~N~l~~ 207 (218)
+..+++|..|++.+|..+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 4567788899998887654
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=7.6e-05 Score=59.03 Aligned_cols=85 Identities=25% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccC-CCCccccCCCCCc
Q 045729 96 LTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLE 172 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~ 172 (218)
.+.++.+++..|.++. ++..-+.++|.|++|+++.|.+...+...-....+|+++-+.+..+.. .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4567777888887762 222334567778888888887763222111244567777777665542 2233345566666
Q ss_pred EEecccCc
Q 045729 173 VFNAMYNV 180 (218)
Q Consensus 173 ~L~L~~N~ 180 (218)
.+.++.|+
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 67666664
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00038 Score=62.21 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCCCcc-cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc--hhhcCCCCCC
Q 045729 72 HQRVTALNLSDIGLGG-TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP--TWIGVLSKLQ 148 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~ 148 (218)
.|.+++|.+.+..+.. ....-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.++ ... ..+..+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence 5789999999987642 23334567899999999999998 34 56788999999988776665 222 3567899999
Q ss_pred EEEccCCcccCCCC-------ccccCCCCCcEEecccCccccc
Q 045729 149 TLRLYNNSFTGPIP-------NSLFNLSKLEVFNAMYNVIDGN 184 (218)
Q Consensus 149 ~L~l~~n~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~ 184 (218)
+||+|...... .+ +.-..+|+|+.||.|++.+...
T Consensus 224 vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 224 VLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99999876552 22 1223589999999998877643
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0006 Score=54.10 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=82.9
Q ss_pred CccceeeeC-CCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc-cCCcccCCCCCCcEEEccCccccc--c
Q 045729 61 CTWIGISCG-SRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG-HLPNELGQLRRLRFIRFGFNKLSG--S 136 (218)
Q Consensus 61 c~w~gv~c~-~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~--~ 136 (218)
..|..+.|. ...++++.|+++.|.+...+...-....+|++|.+.+..+.- .....+..+|.++.|.++.|.+.. .
T Consensus 84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~ 163 (418)
T KOG2982|consen 84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL 163 (418)
T ss_pred ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence 346666554 236888888888888774443322456778888877766641 223334566777777777773320 0
Q ss_pred Cchhh---------------------------cCCCCCCEEEccCCcccCC-CCccccCCCCCcEEecccCccccc-CCc
Q 045729 137 IPTWI---------------------------GVLSKLQTLRLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGN-IPS 187 (218)
Q Consensus 137 ~p~~~---------------------------~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~p~ 187 (218)
..... ...+++..+-+..|.+... .-.....++.+..|+|+.|++... --+
T Consensus 164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence 00000 0123444444444444311 112233456666778888877521 113
Q ss_pred cCCCCCCCCEEEccCCcCccc
Q 045729 188 RIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 188 ~~~~l~~L~~L~L~~N~l~~~ 208 (218)
.+..++.|+.|.+.+|++...
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHcCCchhheeeccCCccccc
Confidence 567778888888888876643
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0042 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
+++.+.+.. .+...-...|.+.++++.+++.++ +...-...|..+++++.+.+.. .+...-...|..+++++.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555543 333233334455555555555443 3312222344454555555543 2221112233445555555554
Q ss_pred C
Q 045729 154 N 154 (218)
Q Consensus 154 ~ 154 (218)
.
T Consensus 90 ~ 90 (129)
T PF13306_consen 90 S 90 (129)
T ss_dssp T
T ss_pred c
Confidence 3
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=2.5e-05 Score=61.13 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=75.6
Q ss_pred CCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCC--ccccCCCCCcE
Q 045729 96 LTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIP--NSLFNLSKLEV 173 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~ 173 (218)
+.+.++|++-++.++ .+. ...+|+.|++|.|+-|+++ .+ ..+..|++|++|+|..|.|. .+. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 567788899898887 332 2357999999999999998 54 34788999999999999987 443 34678999999
Q ss_pred EecccCcccccCCcc-----CCCCCCCCEEE
Q 045729 174 FNAMYNVIDGNIPSR-----IGNFSSPFILN 199 (218)
Q Consensus 174 L~L~~N~l~~~~p~~-----~~~l~~L~~L~ 199 (218)
|.|..|.-.|.-+.. +.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999876655433 34566777665
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0052 Score=42.63 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=64.2
Q ss_pred cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729 91 PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK 170 (218)
Q Consensus 91 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 170 (218)
..|.+..+|+.+.+.. .+...-...|..+++++.+.+..+ +...-...|..+++++.+.+.. .+...-...+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3567778999999875 566344556888889999999875 6523334677887899999976 343233445667899
Q ss_pred CcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
++.+++..+ +...-...+.+. +|+.+.+.. .+....+. |.+.++
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 999999776 442334466776 889888876 33333332 544433
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=2.5e-05 Score=61.65 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEcc
Q 045729 74 RVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFG 129 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 129 (218)
+++.+|+++..++.. +..-+.++.+|+.|.+.++++...+-..+.+=.+|+.++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 466666666555421 11122333444444444444443333333333334444443
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.64 E-value=0.0027 Score=49.92 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCCcEEEEEcCCCCCc---cc-------CCcCCCCCCCCCEEEccCCcccccCCcc----cCCCCCCcEEEccCcccccc
Q 045729 71 RHQRVTALNLSDIGLG---GT-------IPPHLGNLTFLVSLDVAHNNFRGHLPNE----LGQLRRLRFIRFGFNKLSGS 136 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~---~~-------~~~~l~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~ 136 (218)
...+++..+++.--.. .. +.+.+.+++.|+..+++.|.+....|+. +++-..|.+|.+++|.+. .
T Consensus 56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p 134 (388)
T COG5238 56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-P 134 (388)
T ss_pred hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-c
Confidence 3567778877764321 11 2234677899999999999998666654 456788999999999875 2
Q ss_pred Cch-h-------------hcCCCCCCEEEccCCcccCCCCcc-----ccCCCCCcEEecccCcccccCCc--------cC
Q 045729 137 IPT-W-------------IGVLSKLQTLRLYNNSFTGPIPNS-----LFNLSKLEVFNAMYNVIDGNIPS--------RI 189 (218)
Q Consensus 137 ~p~-~-------------~~~l~~L~~L~l~~n~l~~~~p~~-----l~~l~~L~~L~L~~N~l~~~~p~--------~~ 189 (218)
+.. . ...-|.|+++....|++. ..+.. +.....|+.+.+..|.+. |. .+
T Consensus 135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl 210 (388)
T COG5238 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGL 210 (388)
T ss_pred cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHH
Confidence 221 1 234578999999999886 33332 233468899999999875 43 23
Q ss_pred CCCCCCCEEEccCCcCcc
Q 045729 190 GNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 190 ~~l~~L~~L~L~~N~l~~ 207 (218)
..+++|+.||+++|-++-
T Consensus 211 ~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHhCcceeeeccccchhh
Confidence 567899999999998763
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.63 E-value=0.001 Score=31.33 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=9.4
Q ss_pred CcEEecccCcccccCCccCC
Q 045729 171 LEVFNAMYNVIDGNIPSRIG 190 (218)
Q Consensus 171 L~~L~L~~N~l~~~~p~~~~ 190 (218)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00022 Score=56.45 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCC--cccCCCCCCcEEEccCccccccC-------------
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLP--NELGQLRRLRFIRFGFNKLSGSI------------- 137 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~------------- 137 (218)
+++.|.+.++++...+-..+.+-.+|+.++++.+. ++ +.. --+.+++.|..|+++++.+....
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 45555566665555555555555566666665432 22 111 11334555555555555443211
Q ss_pred ----------------chhhcCCCCCCEEEccCCc-ccCCCCccccCCCCCcEEecccCcccccCCcc---CCCCCCCCE
Q 045729 138 ----------------PTWIGVLSKLQTLRLYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR---IGNFSSPFI 197 (218)
Q Consensus 138 ----------------p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~ 197 (218)
.--...+++|..||++.|. ++......+.+++.|++|.++.+.. .+|.. +...++|.+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEE
Confidence 1112345677777776653 3322233455667777777776653 34432 355667777
Q ss_pred EEccCC
Q 045729 198 LNLGYN 203 (218)
Q Consensus 198 L~L~~N 203 (218)
|+..+.
T Consensus 368 Ldv~g~ 373 (419)
T KOG2120|consen 368 LDVFGC 373 (419)
T ss_pred EEeccc
Confidence 776543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0011 Score=31.18 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=9.8
Q ss_pred CCEEEccCCcCcccCCCCCC
Q 045729 195 PFILNLGYNNLQGLLTIFGR 214 (218)
Q Consensus 195 L~~L~L~~N~l~~~~p~~~~ 214 (218)
|++|++++|+++.+++.|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555544444443
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.88 E-value=0.00015 Score=55.51 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=55.9
Q ss_pred CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729 92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 171 (218)
.+..+...+.||++.|++- .....|+.++.+..++++.|++. .+|..++....+..+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455666677777777665 44445555666666677766666 66666666666666666666665 566666666666
Q ss_pred cEEecccCccc
Q 045729 172 EVFNAMYNVID 182 (218)
Q Consensus 172 ~~L~L~~N~l~ 182 (218)
+++++-+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66666666554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.09 E-value=0.00028 Score=54.01 Aligned_cols=84 Identities=26% Similarity=0.235 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
..+++.||++.|++. .+...+..++.+..|+++.|++. ..|..+.....+..+++..|..+ ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 467889999998876 45556777788888999999987 78888888888888888888888 8898899999999999
Q ss_pred ccCCccc
Q 045729 152 LYNNSFT 158 (218)
Q Consensus 152 l~~n~l~ 158 (218)
.-+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888766
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.05 E-value=0.016 Score=25.31 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=3.2
Q ss_pred CcEEEccCccc
Q 045729 123 LRFIRFGFNKL 133 (218)
Q Consensus 123 L~~L~l~~n~l 133 (218)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444433
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.10 E-value=0.1 Score=25.26 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=5.7
Q ss_pred CCcEEEccCcccc
Q 045729 122 RLRFIRFGFNKLS 134 (218)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (218)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.10 E-value=0.1 Score=25.26 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=5.7
Q ss_pred CCcEEEccCcccc
Q 045729 122 RLRFIRFGFNKLS 134 (218)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (218)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.60 E-value=0.1 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCCCEEEccCCcCcccCCC
Q 045729 192 FSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 192 l~~L~~L~L~~N~l~~~~p~ 211 (218)
+++|++|+|++|++..+++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777766554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.60 E-value=0.1 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCCCEEEccCCcCcccCCC
Q 045729 192 FSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 192 l~~L~~L~L~~N~l~~~~p~ 211 (218)
+++|++|+|++|++..+++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777766554
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.46 E-value=0.11 Score=24.59 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=4.7
Q ss_pred CCcEEEccCcccc
Q 045729 122 RLRFIRFGFNKLS 134 (218)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (218)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.97 E-value=0.51 Score=23.03 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=9.6
Q ss_pred CCcEEEccCccccccCch
Q 045729 122 RLRFIRFGFNKLSGSIPT 139 (218)
Q Consensus 122 ~L~~L~l~~n~l~~~~p~ 139 (218)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 5554
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.71 E-value=0.78 Score=22.40 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=10.2
Q ss_pred CCCCEEEccCCcCcc
Q 045729 193 SSPFILNLGYNNLQG 207 (218)
Q Consensus 193 ~~L~~L~L~~N~l~~ 207 (218)
.+|+.|++++|+++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467777777777654
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.12 E-value=0.31 Score=41.52 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=6.4
Q ss_pred CCCCCEEEccCCc
Q 045729 144 LSKLQTLRLYNNS 156 (218)
Q Consensus 144 l~~L~~L~l~~n~ 156 (218)
+++|+.++++++.
T Consensus 242 ~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 242 CRKLKSLDLSGCG 254 (482)
T ss_pred cCCcCccchhhhh
Confidence 3445555555444
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.21 E-value=1.4 Score=21.73 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=10.2
Q ss_pred CCCCEEEccCCcCc
Q 045729 193 SSPFILNLGYNNLQ 206 (218)
Q Consensus 193 ~~L~~L~L~~N~l~ 206 (218)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888764
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.00 E-value=2 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=12.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHhhh
Q 045729 1 MRLSIFFVPMLFLQYLIMASLAMT 24 (218)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~ 24 (218)
|..+.|++..++|.++++.+...+
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 665555555555555444444433
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.98 E-value=0.35 Score=36.52 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=14.5
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccC
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAH 106 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 106 (218)
.|+.+|-++..+...--+.+..++.++.|.+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ 134 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLAN 134 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecc
Confidence 344555555544433333344444444444443
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=73.03 E-value=0.86 Score=38.78 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=6.1
Q ss_pred CCCCcEEEccCcc
Q 045729 120 LRRLRFIRFGFNK 132 (218)
Q Consensus 120 l~~L~~L~l~~n~ 132 (218)
+++|+.++++++.
T Consensus 242 ~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 242 CRKLKSLDLSGCG 254 (482)
T ss_pred cCCcCccchhhhh
Confidence 3444555554444
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.49 E-value=0.023 Score=48.78 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCcccc----cCCcccC----CCCCCcEEEccCcccccc----Cc
Q 045729 75 VTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRG----HLPNELG----QLRRLRFIRFGFNKLSGS----IP 138 (218)
Q Consensus 75 l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~----~p 138 (218)
++.+++..+.++.. +...+....+++.++++.|.+.. .++..+. ...++++|.++++.++.. +.
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 44444444444422 22334445566666666666531 1112222 345566666666665411 11
Q ss_pred hhhcCCCC-CCEEEccCCcccCC----CCccccCC-CCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729 139 TWIGVLSK-LQTLRLYNNSFTGP----IPNSLFNL-SKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 139 ~~~~~l~~-L~~L~l~~n~l~~~----~p~~l~~l-~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
..+...++ +..+++..|.+.+. +.+.+..+ ..++.++++.|.++.. +.+.+..++.++++.++.|++.
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12233333 45566666665522 12223334 4567777777776532 2233445556667777776654
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.66 E-value=1.1 Score=33.94 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=56.4
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc-hhhc-CCCCCCEEEccCCc-ccCCCCccccCCCCCcE
Q 045729 97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIG-VLSKLQTLRLYNNS-FTGPIPNSLFNLSKLEV 173 (218)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~-~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~ 173 (218)
..++.++-++..+..+--..+..++.++.|.+.++.--+... +.++ -.++|+.|++++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 457888888888876555667788888888887775321100 1122 34789999999884 66444455677888888
Q ss_pred EecccC
Q 045729 174 FNAMYN 179 (218)
Q Consensus 174 L~L~~N 179 (218)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 887653
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.22 E-value=4.9 Score=35.07 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=5.4
Q ss_pred CCCcEEEccCc
Q 045729 121 RRLRFIRFGFN 131 (218)
Q Consensus 121 ~~L~~L~l~~n 131 (218)
|+|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44455555544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.66 E-value=12 Score=32.82 Aligned_cols=63 Identities=22% Similarity=0.147 Sum_probs=41.3
Q ss_pred CCcEEEEEcCCCCCccc--CCcCCCCCCCCCEEEccCCcccccCCcccC--CCCCCcEEEccCcccc
Q 045729 72 HQRVTALNLSDIGLGGT--IPPHLGNLTFLVSLDVAHNNFRGHLPNELG--QLRRLRFIRFGFNKLS 134 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~ 134 (218)
.+.|..+++++|++... +..--...++|+.|+|++|...-....++. +...|+.|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 47899999999987622 222223468999999999932211222222 3345888889999875
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.23 E-value=25 Score=16.58 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=9.4
Q ss_pred CCCCCEEEccCCc
Q 045729 192 FSSPFILNLGYNN 204 (218)
Q Consensus 192 l~~L~~L~L~~N~ 204 (218)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3577888888774
No 90
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.44 E-value=37 Score=23.60 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=11.0
Q ss_pred chhhhHHHHHHHHHHHHHHHh
Q 045729 2 RLSIFFVPMLFLQYLIMASLA 22 (218)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~ 22 (218)
||.+|.+.++++++++++.+.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH
Confidence 455665555555554444443
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.43 E-value=33 Score=36.22 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=25.4
Q ss_pred EccCccccccCch-hhcCCCCCCEEEccCCccc
Q 045729 127 RFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFT 158 (218)
Q Consensus 127 ~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~ 158 (218)
||++|+|+ .+|. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57899998 5554 6778899999999999775
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.73 E-value=38 Score=35.80 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.0
Q ss_pred EccCCcccccCC-cccCCCCCCcEEEccCcccc
Q 045729 103 DVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLS 134 (218)
Q Consensus 103 ~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~ 134 (218)
||++|+|+ .+| ..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57899999 555 46888999999999999876
Done!