Query 045729
Match_columns 218
No_of_seqs 315 out of 2197
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-32 1E-36 219.3 16.3 186 27-214 2-196 (313)
2 3rgz_A Protein brassinosteroid 100.0 1E-28 3.5E-33 220.0 15.9 183 28-216 9-223 (768)
3 4eco_A Uncharacterized protein 100.0 2.8E-29 9.6E-34 219.5 11.0 187 30-218 29-332 (636)
4 4fcg_A Uncharacterized protein 99.9 7.8E-28 2.7E-32 194.7 7.7 185 28-217 24-230 (328)
5 4ecn_A Leucine-rich repeat pro 99.9 9.9E-28 3.4E-32 215.0 8.5 183 29-218 267-575 (876)
6 3e6j_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 160.2 15.9 156 54-210 12-176 (229)
7 3m19_A Variable lymphocyte rec 99.9 9.8E-23 3.3E-27 158.7 16.5 146 73-218 35-181 (251)
8 2o6s_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 154.8 15.2 156 57-212 3-167 (208)
9 2v9t_B SLIT homolog 2 protein 99.9 2.9E-22 1E-26 153.2 15.4 152 55-207 5-166 (220)
10 2o6q_A Variable lymphocyte rec 99.9 6E-22 2E-26 155.8 17.6 144 73-216 37-181 (270)
11 2v70_A SLIT-2, SLIT homolog 2 99.9 3.8E-22 1.3E-26 152.6 14.7 153 56-208 6-168 (220)
12 3rgz_A Protein brassinosteroid 99.9 1.5E-22 5E-27 180.4 13.1 96 120-215 631-726 (768)
13 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-22 9E-27 161.2 9.7 138 72-210 75-214 (313)
14 2z80_A TOLL-like receptor 2, v 99.9 1E-21 3.6E-26 160.0 12.1 161 54-217 23-199 (353)
15 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.8E-26 158.5 11.6 143 73-217 127-302 (328)
16 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-20 4.6E-25 149.0 16.6 145 73-217 56-202 (285)
17 3rfs_A Internalin B, repeat mo 99.9 2E-20 6.7E-25 147.3 15.8 138 73-210 85-222 (272)
18 3rfs_A Internalin B, repeat mo 99.9 1.6E-20 5.4E-25 147.9 15.1 145 72-218 62-207 (272)
19 2z81_A CD282 antigen, TOLL-lik 99.8 3.9E-21 1.3E-25 164.8 11.9 157 60-217 3-173 (549)
20 4g8a_A TOLL-like receptor 4; l 99.8 6.1E-21 2.1E-25 165.6 12.5 139 73-211 52-191 (635)
21 1ozn_A Reticulon 4 receptor; N 99.8 4.5E-20 1.5E-24 146.0 16.1 138 73-210 80-218 (285)
22 2z66_A Variable lymphocyte rec 99.8 1E-20 3.6E-25 151.0 12.2 160 57-217 3-200 (306)
23 2v9t_B SLIT homolog 2 protein 99.8 6E-20 2.1E-24 140.3 15.8 140 76-218 14-154 (220)
24 2o6q_A Variable lymphocyte rec 99.8 7.8E-20 2.7E-24 143.7 16.7 147 72-218 60-207 (270)
25 3m19_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 142.9 15.9 139 72-210 58-196 (251)
26 1w8a_A SLIT protein; signaling 99.8 2.6E-20 8.9E-25 139.4 12.9 130 77-209 12-142 (192)
27 2id5_A Lingo-1, leucine rich r 99.8 2.3E-20 7.8E-25 157.7 13.6 154 63-216 13-176 (477)
28 3v47_A TOLL-like receptor 5B a 99.8 1.7E-20 5.9E-25 157.3 12.4 156 59-214 6-176 (455)
29 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-20 7.6E-25 162.0 13.3 144 72-215 31-176 (606)
30 2xot_A Amphoterin-induced prot 99.8 5E-20 1.7E-24 150.6 13.9 155 55-210 12-180 (361)
31 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-19 5E-24 138.1 15.4 140 76-218 14-155 (220)
32 1p9a_G Platelet glycoprotein I 99.8 6.8E-20 2.3E-24 145.6 13.7 141 72-215 54-194 (290)
33 3e6j_A Variable lymphocyte rec 99.8 2.1E-19 7.1E-24 138.1 16.0 147 63-218 14-161 (229)
34 2z62_A TOLL-like receptor 4, v 99.8 4.3E-20 1.5E-24 145.5 12.2 138 73-210 28-166 (276)
35 3zyi_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 152.0 15.8 157 59-217 50-243 (452)
36 3t6q_A CD180 antigen; protein- 99.8 5.6E-20 1.9E-24 159.5 13.3 145 72-216 32-177 (606)
37 2ell_A Acidic leucine-rich nuc 99.8 6.4E-20 2.2E-24 134.1 10.6 137 72-212 23-166 (168)
38 1p9a_G Platelet glycoprotein I 99.8 4.9E-19 1.7E-23 140.7 16.2 142 73-217 31-173 (290)
39 3v47_A TOLL-like receptor 5B a 99.8 1.9E-19 6.5E-24 151.0 14.5 140 73-212 275-414 (455)
40 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 143.3 13.6 143 73-215 101-246 (306)
41 2o6r_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 130.4 14.0 138 58-210 4-141 (177)
42 4eco_A Uncharacterized protein 99.8 1.9E-20 6.4E-25 163.7 6.8 145 71-217 204-377 (636)
43 2xwt_C Thyrotropin receptor; s 99.8 2.4E-19 8.4E-24 138.3 11.5 156 54-211 3-174 (239)
44 3oja_B Anopheles plasmodium-re 99.8 1.8E-19 6E-24 156.5 11.8 137 73-209 51-187 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-18 4.6E-23 140.4 15.6 149 55-207 27-186 (332)
46 2z63_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 153.3 12.6 144 72-215 27-172 (570)
47 2wfh_A SLIT homolog 2 protein 99.8 1.6E-18 5.3E-23 129.8 14.5 127 77-207 14-140 (193)
48 4b8c_D Glucose-repressible alc 99.8 5.3E-20 1.8E-24 162.9 7.5 177 29-211 130-334 (727)
49 2o6s_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 129.0 16.6 140 76-218 10-150 (208)
50 2z7x_B TOLL-like receptor 1, v 99.8 5E-19 1.7E-23 151.0 13.2 145 71-218 322-470 (520)
51 1xku_A Decorin; proteoglycan, 99.8 1.1E-18 3.7E-23 140.8 14.4 147 57-206 27-184 (330)
52 4ezg_A Putative uncharacterize 99.8 3.4E-19 1.2E-23 133.7 10.6 128 74-207 45-173 (197)
53 3j0a_A TOLL-like receptor 5; m 99.8 2.7E-19 9.1E-24 161.0 11.6 150 60-211 13-166 (844)
54 3vq2_A TLR4, TOLL-like recepto 99.8 3E-19 1E-23 154.9 11.5 142 73-214 399-542 (606)
55 3zyj_A Leucine-rich repeat-con 99.8 2E-18 6.9E-23 144.6 15.7 143 73-217 64-232 (440)
56 3o6n_A APL1; leucine-rich repe 99.8 3.6E-19 1.2E-23 146.8 10.9 135 73-208 45-180 (390)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-18 3.9E-23 150.2 13.9 145 71-218 351-499 (562)
58 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.6E-23 147.5 12.9 147 71-217 54-201 (477)
59 2je0_A Acidic leucine-rich nuc 99.8 3E-19 1E-23 128.0 8.2 129 72-202 16-149 (149)
60 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-18 3.8E-23 153.3 13.1 137 73-210 25-162 (680)
61 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.8E-23 137.4 11.6 147 72-218 51-226 (276)
62 4ecn_A Leucine-rich repeat pro 99.8 3E-19 1E-23 160.3 9.1 144 71-217 446-619 (876)
63 3t6q_A CD180 antigen; protein- 99.8 2.9E-18 9.9E-23 148.7 14.7 146 72-217 375-525 (606)
64 3zyj_A Leucine-rich repeat-con 99.8 4.1E-18 1.4E-22 142.7 14.8 144 72-217 111-280 (440)
65 1wwl_A Monocyte differentiatio 99.8 8.5E-19 2.9E-23 140.6 9.4 141 73-217 149-297 (312)
66 3zyi_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 142.1 15.0 144 72-217 122-291 (452)
67 1wwl_A Monocyte differentiatio 99.8 2.8E-19 9.7E-24 143.3 5.8 140 72-212 120-272 (312)
68 2z63_A TOLL-like receptor 4, v 99.8 2.4E-18 8.3E-23 147.9 11.9 144 73-217 373-519 (570)
69 4ezg_A Putative uncharacterize 99.8 2.6E-18 8.8E-23 128.9 10.5 130 72-207 65-195 (197)
70 4g8a_A TOLL-like receptor 4; l 99.8 3.9E-18 1.3E-22 148.0 13.0 138 78-218 36-175 (635)
71 3oja_B Anopheles plasmodium-re 99.8 1.4E-17 5E-22 144.4 16.0 85 73-158 99-184 (597)
72 1xku_A Decorin; proteoglycan, 99.8 5E-18 1.7E-22 136.9 12.1 89 121-210 192-280 (330)
73 3o6n_A APL1; leucine-rich repe 99.8 1.8E-17 6.1E-22 136.6 15.2 40 169-208 248-287 (390)
74 4glp_A Monocyte differentiatio 99.8 4.1E-18 1.4E-22 136.4 10.8 141 72-217 144-295 (310)
75 2xot_A Amphoterin-induced prot 99.8 1.6E-17 5.3E-22 135.8 14.0 133 76-211 21-154 (361)
76 2xwt_C Thyrotropin receptor; s 99.7 5.1E-18 1.7E-22 130.9 9.4 142 73-216 55-229 (239)
77 2z7x_B TOLL-like receptor 1, v 99.7 5.2E-18 1.8E-22 144.7 10.3 137 73-215 21-163 (520)
78 3oja_A Leucine-rich immune mol 99.7 1.8E-18 6.1E-23 146.8 6.9 130 73-206 120-250 (487)
79 1xeu_A Internalin C; cellular 99.7 2.6E-17 9E-22 128.9 13.1 127 72-209 62-188 (263)
80 1h6u_A Internalin H; cell adhe 99.7 3.8E-17 1.3E-21 130.8 14.2 133 73-216 85-217 (308)
81 2z80_A TOLL-like receptor 2, v 99.7 1.4E-18 4.7E-23 141.5 5.9 137 71-209 74-214 (353)
82 2ell_A Acidic leucine-rich nuc 99.7 8.5E-18 2.9E-22 122.8 9.2 121 95-218 22-149 (168)
83 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-17 4.4E-22 134.6 10.8 88 123-211 195-282 (332)
84 1h6t_A Internalin B; cell adhe 99.7 3.2E-17 1.1E-21 130.2 12.9 136 72-218 67-202 (291)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.4E-17 8.2E-22 142.0 13.0 123 94-218 350-475 (562)
86 1h6u_A Internalin H; cell adhe 99.7 3.2E-17 1.1E-21 131.2 12.8 135 72-217 62-196 (308)
87 3o53_A Protein LRIM1, AGAP0063 99.7 2.6E-18 8.9E-23 138.0 6.5 129 74-206 121-250 (317)
88 2je0_A Acidic leucine-rich nuc 99.7 4.3E-18 1.5E-22 122.0 6.6 121 95-217 15-141 (149)
89 3oja_A Leucine-rich immune mol 99.7 8.4E-18 2.9E-22 142.6 9.4 139 74-218 100-239 (487)
90 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 122.2 11.8 127 56-183 5-140 (193)
91 1w8a_A SLIT protein; signaling 99.7 6.9E-17 2.4E-21 120.7 12.6 116 100-218 11-128 (192)
92 1ziw_A TOLL-like receptor 3; i 99.7 1E-16 3.5E-21 140.8 15.5 144 74-217 382-561 (680)
93 3o53_A Protein LRIM1, AGAP0063 99.7 2E-17 6.8E-22 132.9 9.4 140 73-218 99-239 (317)
94 2z81_A CD282 antigen, TOLL-lik 99.7 6.1E-17 2.1E-21 138.8 12.7 138 78-218 10-150 (549)
95 1h6t_A Internalin B; cell adhe 99.7 1E-16 3.5E-21 127.3 13.1 136 72-218 45-180 (291)
96 1m9s_A Internalin B; cell inva 99.7 7.9E-17 2.7E-21 139.8 13.2 135 72-217 64-198 (605)
97 4glp_A Monocyte differentiatio 99.7 7.1E-18 2.4E-22 135.0 5.9 138 74-211 92-269 (310)
98 1a9n_A U2A', U2A'; complex (nu 99.7 2.6E-17 9E-22 121.2 8.4 129 72-207 18-154 (176)
99 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-16 4.7E-21 143.4 13.6 139 76-218 7-150 (844)
100 4fmz_A Internalin; leucine ric 99.7 1.1E-16 3.7E-21 129.7 10.8 136 73-217 199-334 (347)
101 4b8c_D Glucose-repressible alc 99.7 2.5E-18 8.7E-23 152.2 0.8 137 71-211 222-359 (727)
102 3cvr_A Invasion plasmid antige 99.7 1.5E-16 5E-21 137.0 11.4 133 54-207 36-174 (571)
103 3g39_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 114.3 12.0 106 76-184 12-117 (170)
104 1o6v_A Internalin A; bacterial 99.7 3.7E-16 1.3E-20 131.7 13.0 133 73-216 243-375 (466)
105 2r9u_A Variable lymphocyte rec 99.7 2.8E-16 9.6E-21 115.6 10.4 105 76-183 15-119 (174)
106 1xeu_A Internalin C; cellular 99.7 4.6E-16 1.6E-20 121.8 11.7 135 72-218 40-174 (263)
107 1dce_A Protein (RAB geranylger 99.7 3.2E-16 1.1E-20 135.2 11.7 111 98-213 442-553 (567)
108 1dce_A Protein (RAB geranylger 99.7 4E-16 1.4E-20 134.5 11.5 121 74-200 442-567 (567)
109 2o6r_A Variable lymphocyte rec 99.7 7.1E-16 2.4E-20 113.5 10.9 115 72-186 27-141 (177)
110 1ds9_A Outer arm dynein; leuci 99.7 8.8E-20 3E-24 137.1 -10.5 111 92-208 43-155 (198)
111 1m9s_A Internalin B; cell inva 99.6 7.3E-16 2.5E-20 133.8 11.6 136 72-218 42-177 (605)
112 4fmz_A Internalin; leucine ric 99.6 5.9E-16 2E-20 125.4 10.3 127 72-206 220-346 (347)
113 1a9n_A U2A', U2A'; complex (nu 99.6 2.4E-16 8.2E-21 116.0 6.2 114 92-210 14-130 (176)
114 3g39_A Variable lymphocyte rec 99.6 2.4E-15 8.1E-20 110.2 11.6 107 100-209 12-118 (170)
115 3g06_A SSPH2 (leucine-rich rep 99.6 3.6E-16 1.2E-20 136.0 8.2 94 54-158 15-114 (622)
116 1o6v_A Internalin A; bacterial 99.6 1.7E-15 5.8E-20 127.7 11.9 134 73-217 221-354 (466)
117 3cvr_A Invasion plasmid antige 99.6 3.4E-15 1.2E-19 128.5 13.9 124 73-216 100-230 (571)
118 3bz5_A Internalin-J, INLJ; leu 99.6 5.6E-15 1.9E-19 124.3 14.8 130 72-217 63-192 (457)
119 3bz5_A Internalin-J, INLJ; leu 99.6 6.4E-15 2.2E-19 124.0 15.0 123 72-208 84-206 (457)
120 2r9u_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 108.4 11.6 108 100-210 15-122 (174)
121 2ast_B S-phase kinase-associat 99.6 2.1E-17 7.3E-22 133.2 -1.9 83 73-155 93-178 (336)
122 1jl5_A Outer protein YOPM; leu 99.6 1E-14 3.5E-19 122.6 14.2 124 73-210 131-254 (454)
123 4ay9_X Follicle-stimulating ho 99.6 4.1E-15 1.4E-19 121.0 10.3 158 59-217 7-203 (350)
124 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.5E-21 128.6 0.5 133 72-204 117-258 (336)
125 1jl5_A Outer protein YOPM; leu 99.6 6E-14 2.1E-18 118.0 13.7 108 97-217 131-238 (454)
126 2ca6_A RAN GTPase-activating p 99.5 5.3E-16 1.8E-20 127.7 -0.6 137 73-209 159-319 (386)
127 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-13 4E-18 120.2 13.8 73 74-158 82-154 (622)
128 2ifg_A High affinity nerve gro 99.5 8.9E-14 3E-18 112.7 12.2 109 60-183 7-117 (347)
129 2ca6_A RAN GTPase-activating p 99.5 9.6E-16 3.3E-20 126.1 -0.4 135 72-206 59-229 (386)
130 2ifg_A High affinity nerve gro 99.5 8.8E-14 3E-18 112.7 11.0 105 100-207 11-117 (347)
131 1ds9_A Outer arm dynein; leuci 99.5 7.5E-17 2.6E-21 121.0 -7.2 128 72-207 47-186 (198)
132 3goz_A Leucine-rich repeat-con 99.5 2.8E-15 9.7E-20 122.4 1.1 134 74-207 52-210 (362)
133 3goz_A Leucine-rich repeat-con 99.4 2.3E-14 7.8E-19 117.0 3.0 139 72-210 21-184 (362)
134 4ay9_X Follicle-stimulating ho 99.4 3.5E-13 1.2E-17 109.5 8.5 144 72-217 53-227 (350)
135 1z7x_W Ribonuclease inhibitor; 99.4 5.7E-15 1.9E-19 123.8 -3.7 135 73-207 256-412 (461)
136 1z7x_W Ribonuclease inhibitor; 99.3 1.5E-14 5.2E-19 121.3 -5.2 112 96-207 255-384 (461)
137 3un9_A NLR family member X1; l 99.2 3.8E-13 1.3E-17 110.2 -2.0 135 73-207 101-253 (372)
138 3sb4_A Hypothetical leucine ri 99.2 1.3E-10 4.3E-15 93.6 11.9 96 120-218 225-323 (329)
139 3sb4_A Hypothetical leucine ri 99.1 2.5E-10 8.5E-15 91.8 8.9 73 144-218 225-299 (329)
140 3un9_A NLR family member X1; l 99.1 1.2E-12 4.2E-17 107.3 -5.1 135 73-207 72-225 (372)
141 3ogk_B Coronatine-insensitive 99.0 6.5E-12 2.2E-16 108.4 -3.8 136 73-208 378-528 (592)
142 3ogk_B Coronatine-insensitive 99.0 3.4E-11 1.2E-15 103.9 0.7 110 95-206 162-306 (592)
143 3rw6_A Nuclear RNA export fact 99.0 1.1E-11 3.9E-16 96.6 -3.5 79 119-199 168-257 (267)
144 1io0_A Tropomodulin; LRR prote 98.8 2.6E-10 8.9E-15 84.4 -1.7 115 92-206 31-164 (185)
145 2p1m_B Transport inhibitor res 98.8 6.4E-11 2.2E-15 102.1 -6.1 129 73-202 105-244 (594)
146 2p1m_B Transport inhibitor res 98.7 2.2E-10 7.5E-15 98.8 -4.9 131 74-206 373-519 (594)
147 2ra8_A Uncharacterized protein 98.6 7.9E-09 2.7E-13 84.2 1.9 132 72-206 171-320 (362)
148 4fdw_A Leucine rich hypothetic 98.6 8E-07 2.7E-11 73.4 12.7 56 73-130 180-235 (401)
149 3rw6_A Nuclear RNA export fact 98.6 4.4E-08 1.5E-12 76.3 4.8 79 95-175 168-257 (267)
150 1io0_A Tropomodulin; LRR prote 98.6 6.9E-09 2.4E-13 76.6 -0.2 111 72-182 35-164 (185)
151 4fdw_A Leucine rich hypothetic 98.5 8.9E-07 3.1E-11 73.1 12.2 115 97-215 248-368 (401)
152 2ra8_A Uncharacterized protein 98.4 1.8E-07 6.1E-12 76.2 4.2 133 72-207 138-293 (362)
153 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 63.6 3.0 34 74-107 62-95 (176)
154 3e4g_A ATP synthase subunit S, 98.1 6.7E-07 2.3E-11 65.1 1.3 93 88-180 52-150 (176)
155 4fs7_A Uncharacterized protein 97.5 0.00072 2.5E-08 55.3 10.6 85 116-203 292-376 (394)
156 4gt6_A Cell surface protein; l 97.5 0.00067 2.3E-08 55.5 10.3 111 90-204 258-368 (394)
157 4h09_A Hypothetical leucine ri 97.5 0.0015 5.2E-08 52.9 12.3 110 91-203 234-343 (379)
158 4gt6_A Cell surface protein; l 97.5 0.0011 3.7E-08 54.2 10.9 125 74-205 266-390 (394)
159 3rfe_A Platelet glycoprotein I 97.4 0.00034 1.2E-08 48.2 6.3 57 124-182 11-68 (130)
160 4fs7_A Uncharacterized protein 97.4 0.0034 1.2E-07 51.2 12.9 120 92-218 248-368 (394)
161 4h09_A Hypothetical leucine ri 97.3 0.0056 1.9E-07 49.5 13.1 122 92-217 212-334 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 8E-05 2.7E-09 55.1 0.8 85 120-204 69-168 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.0013 4.4E-08 45.2 6.5 56 77-134 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00095 3.2E-08 49.3 2.7 86 118-203 38-136 (197)
165 2lz0_A Uncharacterized protein 46.2 32 0.0011 21.8 4.2 13 93-105 16-28 (100)
166 2lz0_A Uncharacterized protein 45.5 47 0.0016 20.9 5.0 41 114-155 13-53 (100)
167 3ox7_P MH027; urokinase-type p 24.5 25 0.00086 15.2 0.6 10 58-67 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-32 Score=219.29 Aligned_cols=186 Identities=30% Similarity=0.523 Sum_probs=167.7
Q ss_pred CCChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCc--cceeeeCCCC--CcEEEEEcCCCCCcc--cCCcCCCCCCCCC
Q 045729 27 NNLTADQSALLAFKARVVDYRSVLTNNWSISYPICT--WIGISCGSRH--QRVTALNLSDIGLGG--TIPPHLGNLTFLV 100 (218)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~l~l~~~~l~~--~~~~~l~~l~~L~ 100 (218)
.|.++|..||++||+++.++. .+.+ |..+.++|. |.||.|+... .+++.|+++++.+++ .+|+.+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 367899999999999997665 6677 988778998 9999998643 789999999999998 8999999999999
Q ss_pred EEEccC-CcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729 101 SLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179 (218)
Q Consensus 101 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N 179 (218)
+|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999899999999999999999999999899999999999999999999999889999999999999999999
Q ss_pred cccccCCccCCCCC-CCCEEEccCCcCcccCCC-CCC
Q 045729 180 VIDGNIPSRIGNFS-SPFILNLGYNNLQGLLTI-FGR 214 (218)
Q Consensus 180 ~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~-~~~ 214 (218)
.+++.+|..++.++ +|++|++++|.+++.+|. ++.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 99989999999888 899999999998876664 444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1e-28 Score=220.03 Aligned_cols=183 Identities=24% Similarity=0.340 Sum_probs=123.4
Q ss_pred CChHHHHHHHHHHHhccCCCCccCCCCCCCCCCCccceeeeCCCCCcEEEEEcCCCCCccc---CC--------------
Q 045729 28 NLTADQSALLAFKARVVDYRSVLTNNWSISYPICTWIGISCGSRHQRVTALNLSDIGLGGT---IP-------------- 90 (218)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~---~~-------------- 90 (218)
+.++|+.||++||+++.++. .+.+ |..+.+||.|.||.|+ .++|+.|+++++.+.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 35789999999999998776 7777 9877899999999998 48999999999998876 44
Q ss_pred ---------cCCCCCCCCCEEEccCCcccccCCc--ccCCCCCCcEEEccCccccccCchhh-cCCCCCCEEEccCCccc
Q 045729 91 ---------PHLGNLTFLVSLDVAHNNFRGHLPN--ELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLRLYNNSFT 158 (218)
Q Consensus 91 ---------~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~ 158 (218)
+.+..+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ ..+++|++|++++|.++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 4566777777777777777776776 67777777777777777766666544 56666666666666666
Q ss_pred CCCCcc---ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729 159 GPIPNS---LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 159 ~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
+..|.. +.++++|++|++++|.+++..| +..+++|++|++++|.+++.+|.+++++
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 223 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCC
Confidence 544443 3444444444444444443222 1344445555555555544444444443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.8e-29 Score=219.47 Aligned_cols=187 Identities=24% Similarity=0.362 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHhccCCCCccCC-------CCCCCCCCCcc---ceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCC
Q 045729 30 TADQSALLAFKARVVDYRSVLTN-------NWSISYPICTW---IGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFL 99 (218)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L 99 (218)
..|+.||.++|.++.++.|...+ +|+.+.++|.| .||.|+.. ++|+.|+++++++.|.+|+.+.++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence 47999999999999766655333 59988899999 99999864 899999999999999999999999999
Q ss_pred CEEEccCCc-----------------------------------------------------------------------
Q 045729 100 VSLDVAHNN----------------------------------------------------------------------- 108 (218)
Q Consensus 100 ~~L~l~~n~----------------------------------------------------------------------- 108 (218)
++|++++|.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 999999884
Q ss_pred -------ccccCCcccCCCCCCcEEEccCcccccc-----------------Cchhhc--CCCCCCEEEccCCcccCCCC
Q 045729 109 -------FRGHLPNELGQLRRLRFIRFGFNKLSGS-----------------IPTWIG--VLSKLQTLRLYNNSFTGPIP 162 (218)
Q Consensus 109 -------l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~p 162 (218)
+++ +|..++++++|++|++++|.+++. +|..++ .+++|++|++++|.+.+.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 344 788899999999999999999975 899988 99999999999999999999
Q ss_pred ccccCCCCCcEEecccCc-ccc-cCCccCCCC------CCCCEEEccCCcCcccCC--CCCCCCCC
Q 045729 163 NSLFNLSKLEVFNAMYNV-IDG-NIPSRIGNF------SSPFILNLGYNNLQGLLT--IFGRLRLL 218 (218)
Q Consensus 163 ~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p--~~~~l~~L 218 (218)
..+.++++|++|++++|+ ++| .+|..++.+ ++|++|++++|.++..++ .++++++|
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L 332 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCC
Confidence 999999999999999998 887 777777665 778888888888775444 36665543
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.8e-28 Score=194.69 Aligned_cols=185 Identities=21% Similarity=0.283 Sum_probs=134.1
Q ss_pred CChHHHHHHHHHHHhcc-CCCCccCCCC----CCCCCCCccceeeeC--------CCCCcEEEEEcCCCCCcccCCcCCC
Q 045729 28 NLTADQSALLAFKARVV-DYRSVLTNNW----SISYPICTWIGISCG--------SRHQRVTALNLSDIGLGGTIPPHLG 94 (218)
Q Consensus 28 ~~~~~~~~l~~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~--------~~~~~l~~l~l~~~~l~~~~~~~l~ 94 (218)
...+|..||++||.++. ++.++... | ....++|.|.|+.|. ...++++.|++++|.++ .+|+.+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 34678999999999884 55555666 8 345689999999994 12467888888888887 7777788
Q ss_pred CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccC-------
Q 045729 95 NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFN------- 167 (218)
Q Consensus 95 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~------- 167 (218)
++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 8888888888888887 78877888888888888888887 77877777788888888777666666665443
Q ss_pred --CCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 168 --LSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 168 --l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+++|++|++++|.++ .+|..++.+++|++|++++|.+++.++.++.+++
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 666666666666665 5565566666666666666666655444444443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=9.9e-28 Score=214.96 Aligned_cols=183 Identities=25% Similarity=0.400 Sum_probs=150.6
Q ss_pred ChHHHHHHHHHHHhccCCCCccCCCCCCCC-----CC--Ccc------------ceeeeCCCCCcEEEEEcCCCCCcccC
Q 045729 29 LTADQSALLAFKARVVDYRSVLTNNWSISY-----PI--CTW------------IGISCGSRHQRVTALNLSDIGLGGTI 89 (218)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~l~l~~~~l~~~~ 89 (218)
..+|+.||++||+++.+++ |..++ ++ |.| .||.|+. .++|+.|+|+++++.|.+
T Consensus 267 ~~~d~~ALl~~k~~l~~~~------W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGKN------WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHTTGGG------CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred chHHHHHHHHHHHHcCCCC------CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence 3579999999999997663 54332 44 999 9999986 589999999999999999
Q ss_pred CcCCCCCCCCCEEEc-cCCccccc--------------------------------------------------------
Q 045729 90 PPHLGNLTFLVSLDV-AHNNFRGH-------------------------------------------------------- 112 (218)
Q Consensus 90 ~~~l~~l~~L~~L~l-~~n~l~~~-------------------------------------------------------- 112 (218)
|+.+.++++|++|++ ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77755433
Q ss_pred --------------------CCcccCCCCCCcEEEccCccccc-----------------cCchhhc--CCCCCCEEEcc
Q 045729 113 --------------------LPNELGQLRRLRFIRFGFNKLSG-----------------SIPTWIG--VLSKLQTLRLY 153 (218)
Q Consensus 113 --------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~ 153 (218)
+|..+.++++|++|++++|.+++ .+|..++ .+++|++|+++
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 78888999999999999999997 3888877 99999999999
Q ss_pred CCcccCCCCccccCCCCCcEEecccCc-ccc-cCCccCCCCC-------CCCEEEccCCcCcccCC--CCCCCCCC
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNV-IDG-NIPSRIGNFS-------SPFILNLGYNNLQGLLT--IFGRLRLL 218 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p--~~~~l~~L 218 (218)
+|.+.+.+|..+.++++|+.|++++|+ ++| .+|..++.++ +|++|++++|.++.+++ .++++++|
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTC
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCC
Confidence 999998999999999999999999998 887 6776554443 77777777777775444 35555543
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=2.3e-23 Score=160.22 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=137.1
Q ss_pred CCCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCc
Q 045729 54 WSISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLR 124 (218)
Q Consensus 54 w~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 124 (218)
|....+.|.|.++.|... .++++.|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|+
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 667789999999999742 36799999999999988888999999999999999999844445678999999
Q ss_pred EEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729 125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 125 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
+|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999999555556789999999999999999 889999999999999999999996555678899999999999999
Q ss_pred CcccCC
Q 045729 205 LQGLLT 210 (218)
Q Consensus 205 l~~~~p 210 (218)
+....+
T Consensus 171 ~~c~c~ 176 (229)
T 3e6j_A 171 WDCECR 176 (229)
T ss_dssp BCTTBG
T ss_pred ccCCcc
Confidence 886544
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=9.8e-23 Score=158.68 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56889999999999877778899999999999999999766777889999999999999998555567788999999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++.++. +..+++|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 99999955555578899999999999999855555788999999999999999988774 6666554
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.7e-23 Score=154.84 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=131.8
Q ss_pred CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729 57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127 (218)
Q Consensus 57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 127 (218)
..+.|.|.++.|... .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 456789999999642 35799999999999966666788999999999999999955455678999999999
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99999995545567899999999999999996556667899999999999999996555568899999999999998877
Q ss_pred cCCCC
Q 045729 208 LLTIF 212 (218)
Q Consensus 208 ~~p~~ 212 (218)
..|.+
T Consensus 163 ~~~~l 167 (208)
T 2o6s_A 163 TCPGI 167 (208)
T ss_dssp CTTTT
T ss_pred CCCCH
Confidence 66543
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=2.9e-22 Score=153.16 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=134.3
Q ss_pred CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729 55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125 (218)
Q Consensus 55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 125 (218)
++..+.|.|..+.|... .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++
T Consensus 5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 34557789999999642 257999999999999777778999999999999999999777889999999999
Q ss_pred EEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729 126 IRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 126 L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
|++++|.++ .+|. .|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus 85 L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 85 LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999999 5554 57889999999999999998778889999999999999999996666679999999999999998
Q ss_pred Ccc
Q 045729 205 LQG 207 (218)
Q Consensus 205 l~~ 207 (218)
+..
T Consensus 164 ~~c 166 (220)
T 2v9t_B 164 FIC 166 (220)
T ss_dssp EEC
T ss_pred cCC
Confidence 754
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6e-22 Score=155.81 Aligned_cols=144 Identities=22% Similarity=0.191 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 35778888888887555557777888888888888777333334566777777777777777433345566667777777
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLR 216 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~ 216 (218)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. |.+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 181 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence 77766644444555666666666666666533333355555566666665555554443 44433
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=152.56 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=134.4
Q ss_pred CCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729 56 ISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125 (218)
Q Consensus 56 ~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 125 (218)
+..+.|.|..+.|... ...++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 4456788999988642 2467899999999997655 35789999999999999999766778999999999
Q ss_pred EEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729 126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205 (218)
Q Consensus 126 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 205 (218)
|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999999966667799999999999999999987788999999999999999999987789999999999999999998
Q ss_pred ccc
Q 045729 206 QGL 208 (218)
Q Consensus 206 ~~~ 208 (218)
.+.
T Consensus 166 ~c~ 168 (220)
T 2v70_A 166 NCN 168 (220)
T ss_dssp ECS
T ss_pred cCC
Confidence 753
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.5e-22 Score=180.45 Aligned_cols=96 Identities=30% Similarity=0.520 Sum_probs=69.7
Q ss_pred CCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEE
Q 045729 120 LRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILN 199 (218)
Q Consensus 120 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 199 (218)
+++|++|++++|+++|.+|..++.+++|++|++++|.++|.+|..++++++|+.||+++|+++|.+|..++.+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCcCcccCCCCCCC
Q 045729 200 LGYNNLQGLLTIFGRL 215 (218)
Q Consensus 200 L~~N~l~~~~p~~~~l 215 (218)
+++|+++|.+|..+.+
T Consensus 711 ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CCSSEEEEECCSSSSG
T ss_pred CcCCcccccCCCchhh
Confidence 7777777777764443
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.6e-22 Score=161.17 Aligned_cols=138 Identities=30% Similarity=0.480 Sum_probs=103.6
Q ss_pred CCcEEEEEcCC-CCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSD-IGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
.+++++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46788888884 77877788888888888888888888877788778888888888888888877777778888888888
Q ss_pred EccCCcccCCCCccccCCC-CCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 151 RLYNNSFTGPIPNSLFNLS-KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..++ |++|++++|.+++.+|
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence 8888888777777777776 777777777777766666655554 5555555555555444
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=159.99 Aligned_cols=161 Identities=19% Similarity=0.247 Sum_probs=132.2
Q ss_pred CCCCCCCCccceeeeCC-----------CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCC
Q 045729 54 WSISYPICTWIGISCGS-----------RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRR 122 (218)
Q Consensus 54 w~~~~~~c~w~gv~c~~-----------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 122 (218)
|......|.|.++ |+. -.+++++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 4455677888876 532 1257999999999999766668999999999999999999777778999999
Q ss_pred CcEEEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCc--cccCCCCCcEEecccCc-ccccCCccCCCCCCCCEE
Q 045729 123 LRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFIL 198 (218)
Q Consensus 123 L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L 198 (218)
|++|++++|+++ .+|. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|. +.+..+..++.+++|++|
T Consensus 102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999999999 5555 4889999999999999999 5555 68889999999999994 665556788999999999
Q ss_pred EccCCcCcccCCC-CCCCCC
Q 045729 199 NLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 199 ~L~~N~l~~~~p~-~~~l~~ 217 (218)
++++|.+++.+|. ++.+++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp EEEETTCCEECTTTTTTCSE
T ss_pred ECCCCCcCccCHHHHhcccc
Confidence 9999999988665 776654
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.1e-21 Score=158.53 Aligned_cols=143 Identities=19% Similarity=0.149 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC--------------------------------cccCCC
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP--------------------------------NELGQL 120 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p--------------------------------~~~~~l 120 (218)
++++.|++++|.++ .+|+.+.++++|++|++++|++.+.+| ..+..+
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 205 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence 45666666666665 555555555555555555555444444 444444
Q ss_pred CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729 121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL 200 (218)
Q Consensus 121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 200 (218)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|++|++
T Consensus 206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 55555555555554 34444555555555555555555555555555555555555555555555555555556666666
Q ss_pred cCCcCcccCCC-CCCCCC
Q 045729 201 GYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 201 ~~N~l~~~~p~-~~~l~~ 217 (218)
++|++.+.+|. ++++++
T Consensus 285 ~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp TTCTTCCCCCGGGGGSCT
T ss_pred CCCCchhhccHHHhhccC
Confidence 66555555444 554443
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.3e-20 Score=149.03 Aligned_cols=145 Identities=22% Similarity=0.171 Sum_probs=75.2
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
++++.|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 445555555555554444455555555555555554 4433344455555555555555555543344455555555555
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.+|. ++++++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 555555533333455555555666665555533333455556666666666666555433 444443
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2e-20 Score=147.31 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 34444444444444333333444445555555555444333333444445555555555444322333344445555555
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++.+..|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 5554443333333444455555555555543333334444555555555554444433
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.6e-20 Score=147.85 Aligned_cols=145 Identities=22% Similarity=0.188 Sum_probs=127.2
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5789999999999985 3 4688999999999999999966666689999999999999999966666689999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
+++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++.++. ++.+++|
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 999999966666678999999999999999966666789999999999999999998886 6776654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=3.9e-21 Score=164.83 Aligned_cols=157 Identities=20% Similarity=0.215 Sum_probs=136.0
Q ss_pred CCccceeeeCCC-----------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEc
Q 045729 60 ICTWIGISCGSR-----------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRF 128 (218)
Q Consensus 60 ~c~w~gv~c~~~-----------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 128 (218)
.|.|.|+ |+.+ .+++++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888887 6521 257999999999999888889999999999999999999777788999999999999
Q ss_pred cCccccccCchhhcCCCCCCEEEccCCcccC-CCCccccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCc
Q 045729 129 GFNKLSGSIPTWIGVLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 129 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 206 (218)
++|++++..|..++.+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..++++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999996666679999999999999999985 357788999999999999999555665 57999999999999999999
Q ss_pred ccCCC-CCCCCC
Q 045729 207 GLLTI-FGRLRL 217 (218)
Q Consensus 207 ~~~p~-~~~l~~ 217 (218)
+.+|. ++.+++
T Consensus 162 ~~~~~~l~~l~~ 173 (549)
T 2z81_A 162 NYQSQSLKSIRD 173 (549)
T ss_dssp EECTTTTTTCSE
T ss_pred ccChhhhhcccc
Confidence 87665 666553
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.1e-21 Score=165.63 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=124.2
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
..+++||+++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57999999999999777778999999999999999999666678999999999999999999544567899999999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
++|.+++..+..+.++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9999996656678999999999999999975 4678889999999999999999987664
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.5e-20 Score=146.00 Aligned_cols=138 Identities=22% Similarity=0.198 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCC-CcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIG-LGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
++++.|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 455555555554 4433344555555556666655555544444455555556666655555533333455555556666
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
+++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 65555553333345555555566665555555555555555555666665555555443
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1e-20 Score=151.05 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=99.9
Q ss_pred CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--CCcccCCCCCCcE
Q 045729 57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--LPNELGQLRRLRF 125 (218)
Q Consensus 57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~ 125 (218)
..+.|.|.++.|... .++++.|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 446689999999742 25799999999999843334478889999999988887622 2333334455555
Q ss_pred EEccCccccccCch-------------------------hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCc
Q 045729 126 IRFGFNKLSGSIPT-------------------------WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV 180 (218)
Q Consensus 126 L~l~~n~l~~~~p~-------------------------~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~ 180 (218)
|++++|.++ .+|. .+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 555555444 3333 44455555555555555554445555556666666666666
Q ss_pred ccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 181 IDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 181 l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
+++ .+|..+..+++|++|++++|.+++.+|. ++.+++
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 654 3556666666667777777766666443 555443
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=6e-20 Score=140.28 Aligned_cols=140 Identities=23% Similarity=0.275 Sum_probs=123.1
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
+.++.++++++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46899999988 6777664 78999999999999666668999999999999999999777889999999999999999
Q ss_pred cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++. +..+++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 99944444568899999999999999987788999999999999999999998876 7776654
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=7.8e-20 Score=143.70 Aligned_cols=147 Identities=22% Similarity=0.184 Sum_probs=119.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 57899999999999855455568899999999999999855555678899999999999999866666788899999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.++. +..+++|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 999999855555578889999999999999865555688899999999999999887775 6666543
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=5.9e-20 Score=142.90 Aligned_cols=139 Identities=20% Similarity=0.167 Sum_probs=123.4
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 57899999999999987788899999999999999999966666788999999999999999955555678999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+...
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 99999996556678899999999999999996666688999999999999999987633
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.84 E-value=2.6e-20 Score=139.39 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=107.4
Q ss_pred EEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 77 ALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 77 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
.+++++++++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4666777775 6776554 3889999999999854443 3788999999999999998777888889999999999999
Q ss_pred cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 998777777888999999999999999888888899999999999999887643
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=157.72 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=119.3
Q ss_pred cceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccc
Q 045729 63 WIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKL 133 (218)
Q Consensus 63 w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 133 (218)
|..+.|... ..+++.|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 566777531 35788899999998877778888888999999998888877788888888889999988888
Q ss_pred cccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-C
Q 045729 134 SGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-F 212 (218)
Q Consensus 134 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~ 212 (218)
++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++. +
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 843334567888888888888888876777788888888888888888766677777788888888888877765543 4
Q ss_pred CCCC
Q 045729 213 GRLR 216 (218)
Q Consensus 213 ~~l~ 216 (218)
.+++
T Consensus 173 ~~l~ 176 (477)
T 2id5_A 173 SHLH 176 (477)
T ss_dssp TTCT
T ss_pred cccC
Confidence 4333
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.7e-20 Score=157.33 Aligned_cols=156 Identities=20% Similarity=0.244 Sum_probs=133.2
Q ss_pred CCCccce--eeeCCC--------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccC-CcccCCCCCCcEEE
Q 045729 59 PICTWIG--ISCGSR--------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-PNELGQLRRLRFIR 127 (218)
Q Consensus 59 ~~c~w~g--v~c~~~--------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ 127 (218)
..|.|.+ +.|... .+++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 3444444 777542 267999999999999888999999999999999999997555 45689999999999
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCcc--ccCCCCCcEEecccCcccccCCcc-CCCCCCCCEEEccCCc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNS--LFNLSKLEVFNAMYNVIDGNIPSR-IGNFSSPFILNLGYNN 204 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~ 204 (218)
+++|.+++..|..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999999777889999999999999999998755554 889999999999999999777766 7899999999999999
Q ss_pred CcccCCC-CCC
Q 045729 205 LQGLLTI-FGR 214 (218)
Q Consensus 205 l~~~~p~-~~~ 214 (218)
+++.+|. ++.
T Consensus 166 l~~~~~~~l~~ 176 (455)
T 3v47_A 166 VKSICEEDLLN 176 (455)
T ss_dssp BSCCCTTTSGG
T ss_pred ccccChhhhhc
Confidence 9988765 544
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=2.2e-20 Score=161.98 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=129.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.+++++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 36899999999999988888999999999999999999977788899999999999999999977788999999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL 215 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l 215 (218)
+++|.+++..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|.+++.+|. ++.+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 99999996666789999999999999999985 5799999999999999999999988765 5443
No 30
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=5e-20 Score=150.64 Aligned_cols=155 Identities=23% Similarity=0.264 Sum_probs=132.0
Q ss_pred CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCCcccccCCcccCCCCCCc
Q 045729 55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHNNFRGHLPNELGQLRRLR 124 (218)
Q Consensus 55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 124 (218)
++..+.|.+..+.|... ...++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|+
T Consensus 12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 12 CPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 34556788888888642 34688999999999977777777 999999999999999966667899999999
Q ss_pred EEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccC----CCCCCCCEEEc
Q 045729 125 FIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRI----GNFSSPFILNL 200 (218)
Q Consensus 125 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L 200 (218)
+|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.++ .+|..+ ..+++|++|++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEEC
Confidence 9999999999555567899999999999999999777888999999999999999999 566544 57999999999
Q ss_pred cCCcCcccCC
Q 045729 201 GYNNLQGLLT 210 (218)
Q Consensus 201 ~~N~l~~~~p 210 (218)
++|++++.++
T Consensus 171 ~~N~l~~l~~ 180 (361)
T 2xot_A 171 SSNKLKKLPL 180 (361)
T ss_dssp CSSCCCCCCH
T ss_pred CCCCCCccCH
Confidence 9999997664
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=138.12 Aligned_cols=140 Identities=22% Similarity=0.209 Sum_probs=122.3
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (218)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 37999999998 5777654 467899999999996645 3478999999999999999966666899999999999999
Q ss_pred CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|. |..+++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence 999977777789999999999999999988889999999999999999999998765 7777654
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=6.8e-20 Score=145.63 Aligned_cols=141 Identities=26% Similarity=0.234 Sum_probs=88.1
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++..+ . ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 3455566666666553222 1 45666666666666666 5666666677777777777777644445566777777777
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRL 215 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l 215 (218)
+++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++..++.+...
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 7777777444444566677777777777776333334566777777777777777655554443
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=2.1e-19 Score=138.10 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=125.4
Q ss_pred cceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc
Q 045729 63 WIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG 142 (218)
Q Consensus 63 w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 142 (218)
|..-.|. .+.++.++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..+.
T Consensus 14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 4445664 346899999987 7777654 8999999999999977788899999999999999999844445678
Q ss_pred CCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 143 VLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
.+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. +..+++|
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 9999999999999999655666789999999999999999 8999999999999999999999988765 7766654
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=4.3e-20 Score=145.48 Aligned_cols=138 Identities=19% Similarity=0.138 Sum_probs=112.0
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888899888888666667888888899999888888655667888888889998888888666677888888888888
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++|.+++..+..+..+++|++|++++|.+++ .+|..++.+++|++|++++|++++.++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 8888886555567888888888888888875 357888888888888888888887654
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.4e-19 Score=152.01 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=111.6
Q ss_pred CCCc--cceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729 59 PICT--WIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127 (218)
Q Consensus 59 ~~c~--w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 127 (218)
+.|. |..+.|... .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 50 C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 50 CSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 4453 456777532 35789999999999988888899999999999999999977778888999999999
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCC-------------------------CCCcEEecccCccc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNL-------------------------SKLEVFNAMYNVID 182 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-------------------------~~L~~L~L~~N~l~ 182 (218)
+++|++++..+..+..+++|++|++++|.+++..+..+.++ ++|+.|++++|+++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 99999985445568888999999999998874433344444 44555555555554
Q ss_pred ccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 183 GNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 183 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
.+| .+..+++|++|++++|.+++.+|. |..+++
T Consensus 210 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 243 (452)
T 3zyi_A 210 -DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243 (452)
T ss_dssp -SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred -ccc-cccccccccEEECcCCcCcccCcccccCccC
Confidence 233 355555666666666666665443 444443
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=5.6e-20 Score=159.46 Aligned_cols=145 Identities=17% Similarity=0.031 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
...+++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35799999999999988888999999999999999999988888999999999999999999977788999999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLR 216 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~ 216 (218)
+++|.+++..|..+.++++|++|++++|.+++..++.+..+++|++|++++|.+++.+|. ++.++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 999999965577788999999999999999863334455589999999999999887664 44444
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.82 E-value=6.4e-20 Score=134.15 Aligned_cols=137 Identities=17% Similarity=0.143 Sum_probs=121.7
Q ss_pred CCcEEEEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 468999999999998 78888889999999999999999854 678899999999999999997688888889999999
Q ss_pred EccCCcccCCCC--ccccCCCCCcEEecccCcccccCCc----cCCCCCCCCEEEccCCcCcccCCCC
Q 045729 151 RLYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPS----RIGNFSSPFILNLGYNNLQGLLTIF 212 (218)
Q Consensus 151 ~l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~ 212 (218)
++++|.+++ +| ..+..+++|+.|++++|.+++ +|. .+..+++|++|++++|.+...+.+.
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 999999994 44 778899999999999999994 554 7889999999999999988776543
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.9e-19 Score=140.67 Aligned_cols=142 Identities=24% Similarity=0.184 Sum_probs=92.8
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+..+++|++|++++|.+++ ++.. ..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 456677777777766556666777777777777777763 3322 56667777777777776 66666666777777777
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++.++. +..+++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 77777644445566677777777777777644444556677777777777777766554 444443
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.9e-19 Score=150.98 Aligned_cols=140 Identities=19% Similarity=0.105 Sum_probs=128.0
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57999999999999888999999999999999999999877888999999999999999999777888999999999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIF 212 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 212 (218)
++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999777889999999999999999999655556789999999999999999988754
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.2e-19 Score=143.35 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=87.8
Q ss_pred CcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc-cCchhhcCCCCCCEE
Q 045729 73 QRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG-SIPTWIGVLSKLQTL 150 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L 150 (218)
++++.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 455555555555553332 345566666666666666665555556666666666666666654 355566666666666
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL 215 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l 215 (218)
++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.+|. +..+
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 6666666655566666666677777777766644444566666777777777776665553 4444
No 41
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.81 E-value=5.3e-19 Score=130.36 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=105.5
Q ss_pred CCCCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccC
Q 045729 58 YPICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137 (218)
Q Consensus 58 ~~~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 137 (218)
.+.|.|.++.|. +++++ .+|..+ .+++++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 4 ~C~C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 456778777764 33444 345433 368899999999998555556788899999999999998544
Q ss_pred chhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 138 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 4557888999999999999986555567888999999999999985444456788999999999999887655
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.9e-20 Score=163.70 Aligned_cols=145 Identities=23% Similarity=0.359 Sum_probs=125.2
Q ss_pred CCCcEEEEEcCCCCCccc-----------------CCcCCC--CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc
Q 045729 71 RHQRVTALNLSDIGLGGT-----------------IPPHLG--NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN 131 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 131 (218)
..+++++|++++|.+++. +|+.+. ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 367899999999999985 999998 9999999999999999999999999999999999999
Q ss_pred c-ccc-cCchhhcCC------CCCCEEEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCccCCCCCCCCEEEcc
Q 045729 132 K-LSG-SIPTWIGVL------SKLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLG 201 (218)
Q Consensus 132 ~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 201 (218)
+ ++| .+|..++.+ ++|++|++++|.++ .+|. .+.++++|+.|++++|.++|.+| .++.+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 988 788888776 89999999999998 8888 88899999999999999988888 77777777888887
Q ss_pred CCcCcccCCCCCCCCC
Q 045729 202 YNNLQGLLTIFGRLRL 217 (218)
Q Consensus 202 ~N~l~~~~p~~~~l~~ 217 (218)
+|.++..++.++++++
T Consensus 362 ~N~l~~lp~~l~~l~~ 377 (636)
T 4eco_A 362 YNQITEIPANFCGFTE 377 (636)
T ss_dssp SSEEEECCTTSEEECT
T ss_pred CCccccccHhhhhhcc
Confidence 7777755545555543
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.4e-19 Score=138.32 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=115.0
Q ss_pred CCCCCCCCcc-ce--eeeCC------CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCc-ccccCCcccCCCCCC
Q 045729 54 WSISYPICTW-IG--ISCGS------RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNN-FRGHLPNELGQLRRL 123 (218)
Q Consensus 54 w~~~~~~c~w-~g--v~c~~------~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L 123 (218)
|++..+.|.+ .. |.|.. -..+++.|++++|++++..+..+.++++|++|++++|. ++...+..|.++++|
T Consensus 3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L 82 (239)
T 2xwt_C 3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82 (239)
T ss_dssp CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence 5555556654 44 44743 23578899999999986666688889999999999997 875445578889999
Q ss_pred cEEEccC-ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCc---EEecccC-cccccCCccCCCCCCCC-E
Q 045729 124 RFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE---VFNAMYN-VIDGNIPSRIGNFSSPF-I 197 (218)
Q Consensus 124 ~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~ 197 (218)
++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+ .|++++| .+++..+..+..+++|+ +
T Consensus 83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 9999998 88884444677888899999999888884 665 66667776 7777777 77644445577777777 7
Q ss_pred EEccCCcCcccCCC
Q 045729 198 LNLGYNNLQGLLTI 211 (218)
Q Consensus 198 L~L~~N~l~~~~p~ 211 (218)
|++++|.++..++.
T Consensus 161 L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 161 LKLYNNGFTSVQGY 174 (239)
T ss_dssp EECCSCCCCEECTT
T ss_pred EEcCCCCCcccCHh
Confidence 77777777754443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.8e-19 Score=156.47 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
.+++.++++++.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46678888888877544445677888889999888888666668888888999999888888666667788888999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 888888433344578888889999888888777777888888888888888888753
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.4e-18 Score=140.41 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=117.2
Q ss_pred CCCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045729 55 SISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRF 125 (218)
Q Consensus 55 ~~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 125 (218)
++..+.|.|..+.|... .++++.|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++
T Consensus 27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 34446688999998631 357999999999999777788999999999999999999777888999999999
Q ss_pred EEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCccc--ccCCccCCCCCCCCEEEccCC
Q 045729 126 IRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID--GNIPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 126 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N 203 (218)
|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++ +..|..+..+ +|++|++++|
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 999999998 7777654 78999999999998555556788899999999998885 2455555554 4444444444
Q ss_pred cCcc
Q 045729 204 NLQG 207 (218)
Q Consensus 204 ~l~~ 207 (218)
.+++
T Consensus 183 ~l~~ 186 (332)
T 2ft3_A 183 KLTG 186 (332)
T ss_dssp BCSS
T ss_pred CCCc
Confidence 4443
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=153.30 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=119.4
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35788999999999877777888999999999999998866667788899999999999998866667888999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL 215 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l 215 (218)
+++|.+++..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|.+++.++. ++.+
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 99998885444468888999999999998885 4688888999999999999988877654 4433
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=129.84 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=108.9
Q ss_pred EEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCc
Q 045729 77 ALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNS 156 (218)
Q Consensus 77 ~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 156 (218)
.+++++++++ .+|..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4667777777 6676553 68999999999998 888889999999999999999996666789999999999999999
Q ss_pred ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 157 FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 157 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 997777788999999999999999995444568899999999999998753
No 48
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=5.3e-20 Score=162.92 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHHHhccCCCCccCCCCCC-CCCCCccceeeeCCCCCcE------------------EEEEcCCCCCcc--
Q 045729 29 LTADQSALLAFKARVVDYRSVLTNNWSI-SYPICTWIGISCGSRHQRV------------------TALNLSDIGLGG-- 87 (218)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~l------------------~~l~l~~~~l~~-- 87 (218)
.+.+..++.+++.+.....+.....|.. ....+.|.++.+.. +++ ..++|+.+.+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCcc
Confidence 3567788888887775433333333633 33556777765542 223 333444444332
Q ss_pred -------cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCC
Q 045729 88 -------TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGP 160 (218)
Q Consensus 88 -------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 160 (218)
..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 23566788999999999999998 88888889999999999999999 99999999999999999999999 8
Q ss_pred CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 161 IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 161 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|++++.+|.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 8999999999999999999998 8899999999999999999999987664
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-18 Score=129.01 Aligned_cols=140 Identities=20% Similarity=0.189 Sum_probs=117.6
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46888998887 566554 468999999999999555556889999999999999999544456789999999999999
Q ss_pred cccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++. ++.+++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 99965555678999999999999999965566689999999999999999988776 6766654
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=150.95 Aligned_cols=145 Identities=23% Similarity=0.257 Sum_probs=124.0
Q ss_pred CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchh-hcCCCCC
Q 045729 71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTW-IGVLSKL 147 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L 147 (218)
..++++.|++++|.+++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 45789999999999998889999999999999999999985 55677889999999999999999657764 7788999
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 148 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++..++. +..+++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcc
Confidence 9999999999877776554 78999999999998 8888888999999999999999977665 6666654
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.1e-18 Score=140.82 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=102.2
Q ss_pred CCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729 57 SYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127 (218)
Q Consensus 57 ~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 127 (218)
..+.|.|..+.|... .+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 346688999988631 35789999999999977777899999999999999999977788899999999999
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc--cCCccCCCCCCCCEEEccCCcC
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG--NIPSRIGNFSSPFILNLGYNNL 205 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l 205 (218)
+++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.++. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999887 6665443 566666666666654444445555555555555555532 3344444444444444444444
Q ss_pred c
Q 045729 206 Q 206 (218)
Q Consensus 206 ~ 206 (218)
+
T Consensus 184 ~ 184 (330)
T 1xku_A 184 T 184 (330)
T ss_dssp C
T ss_pred c
Confidence 3
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=3.4e-19 Score=133.69 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
+++.+++++|.++ .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4455555555554 333 3445555555555555443 22244455555555555555554444445555555555555
Q ss_pred CCcccCCCCccccCCCCCcEEecccCc-ccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 555554444445555555555555554 32 333 34455555555555555544
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=160.97 Aligned_cols=150 Identities=18% Similarity=0.156 Sum_probs=129.7
Q ss_pred CCccceeeeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccC-CcccCCCCCCcEEEccCccccccCc
Q 045729 60 ICTWIGISCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHL-PNELGQLRRLRFIRFGFNKLSGSIP 138 (218)
Q Consensus 60 ~c~w~gv~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p 138 (218)
.|.|..|.+ ..+++++|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 456777766 3688999999999999888899999999999999999666566 6779999999999999999997778
Q ss_pred hhhcCCCCCCEEEccCCcccCCCCcc--ccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCcccCCC
Q 045729 139 TWIGVLSKLQTLRLYNNSFTGPIPNS--LFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
..|..+++|++|++++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 99999999999999999999766665 8899999999999999986554 5789999999999999998876554
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.79 E-value=3e-19 Score=154.87 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=74.0
Q ss_pred CcEEEEEcCCCCCcccCC-cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccccc-CchhhcCCCCCCEE
Q 045729 73 QRVTALNLSDIGLGGTIP-PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS-IPTWIGVLSKLQTL 150 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L 150 (218)
++++.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 334444444444443333 3444455555555555555544444555555555555555555542 44455555555555
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGR 214 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 214 (218)
++++|.+++..|..+..+++|+.|++++|++++..|..++.+++|++|++++|+++..++.+..
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~ 542 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence 5555555544455555555555555555555554455555555555555555555544444433
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=144.55 Aligned_cols=143 Identities=22% Similarity=0.179 Sum_probs=99.5
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|+++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56788888888888777778888888888888888888655667888888888888888887443446777888888888
Q ss_pred cCCcccCCCCcccc-------------------------CCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 153 YNNSFTGPIPNSLF-------------------------NLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 153 ~~n~l~~~~p~~l~-------------------------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
++|.+++..+..+. ++++|+.|++++|+++ .+| .+..+++|++|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 88877643333333 4555555555555555 344 35566667777777777766
Q ss_pred cCCC-CCCCCC
Q 045729 208 LLTI-FGRLRL 217 (218)
Q Consensus 208 ~~p~-~~~l~~ 217 (218)
.+|. |.++++
T Consensus 222 ~~~~~~~~l~~ 232 (440)
T 3zyj_A 222 IRPGSFQGLMH 232 (440)
T ss_dssp ECTTTTTTCTT
T ss_pred cChhhhccCcc
Confidence 6554 555554
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=3.6e-19 Score=146.76 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
.+++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56788888888877433334677888888888888888655667888888888888888888666667788888888888
Q ss_pred cCCcccCCCCcc-ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729 153 YNNSFTGPIPNS-LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 153 ~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
++|.++ .+|.. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 888888 45544 57788888888888888866666788888888888888888765
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=150.23 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=122.6
Q ss_pred CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCch-hhcCCCCC
Q 045729 71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKL 147 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L 147 (218)
..++++.|++++|.+++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 46789999999999998889999999999999999999984 2345688999999999999999965765 47788999
Q ss_pred CEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 148 QTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 148 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. +..+++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 9999999999876666543 68999999999998 7888888999999999999999987776 7766654
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=147.48 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=123.2
Q ss_pred CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
..++++.|++++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 35789999999999998888889999999999999999984444457889999999999999987777888899999999
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.++. +..+++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 9999999877777888899999999999998854445678888899999988888887664 555544
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.78 E-value=3e-19 Score=128.02 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=112.1
Q ss_pred CCcEEEEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367899999999998 78898889999999999999999854 678899999999999999996688888889999999
Q ss_pred EccCCcccCC-CCccccCCCCCcEEecccCcccccCC---ccCCCCCCCCEEEccC
Q 045729 151 RLYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIP---SRIGNFSSPFILNLGY 202 (218)
Q Consensus 151 ~l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~ 202 (218)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..++.+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999852 34778899999999999999985444 3688899999999864
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.1e-18 Score=153.26 Aligned_cols=137 Identities=22% Similarity=0.231 Sum_probs=112.8
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch-hhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ 151 (218)
+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|. .|..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 57888999999888666667888888999999988888777777888888999999888888 4554 688888888888
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
+++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+++.++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 88888886556778888888888888888887777778888888888888888777655
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.1e-18 Score=137.39 Aligned_cols=147 Identities=21% Similarity=0.158 Sum_probs=85.6
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 35566666666666654455566666666666666666644445566666666666666666533333455666666666
Q ss_pred ccCCcccCC-CCccccCCCCCcEEecccCcccccCCcc---------------------------CCCCCCCCEEEccCC
Q 045729 152 LYNNSFTGP-IPNSLFNLSKLEVFNAMYNVIDGNIPSR---------------------------IGNFSSPFILNLGYN 203 (218)
Q Consensus 152 l~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~---------------------------~~~l~~L~~L~L~~N 203 (218)
+++|.+++. +|..+..+++|+.|++++|++++..+.. .....+|++|++++|
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 666666532 4555566666666666666555332222 222336777777777
Q ss_pred cCcccCCC-CCCCCCC
Q 045729 204 NLQGLLTI-FGRLRLL 218 (218)
Q Consensus 204 ~l~~~~p~-~~~l~~L 218 (218)
.+++.++. +..+++|
T Consensus 211 ~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CCSCCCTTTTTTCCSC
T ss_pred ceeecCHhHhcccccc
Confidence 77776665 4555543
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3e-19 Score=160.30 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=124.7
Q ss_pred CCCcEEEEEcCCCCCcc-----------------cCCcCCC--CCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc
Q 045729 71 RHQRVTALNLSDIGLGG-----------------TIPPHLG--NLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN 131 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 131 (218)
..++++.|++++|.+++ .+|+.+. ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 36789999999999998 3899888 9999999999999999999999999999999999999
Q ss_pred c-ccc-cCchhhcCCC-------CCCEEEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729 132 K-LSG-SIPTWIGVLS-------KLQTLRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL 200 (218)
Q Consensus 132 ~-l~~-~~p~~~~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 200 (218)
+ ++| .+|..++.++ +|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .++.+++|++|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 887 7887776655 8999999999998 8888 8889999999999999988 788 8888888888888
Q ss_pred cCCcCcccCCCCCCCCC
Q 045729 201 GYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 201 ~~N~l~~~~p~~~~l~~ 217 (218)
++|.++..++.+.++++
T Consensus 603 s~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp CSSCCSCCCTTSCEECT
T ss_pred cCCccccchHHHhhccc
Confidence 88888855545666554
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=2.9e-18 Score=148.69 Aligned_cols=146 Identities=20% Similarity=0.162 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
.++++.|++++|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 456666677776666666666666677777777777766544433 6666777777777777765556666667777777
Q ss_pred EccCCcccCC---CCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 151 RLYNNSFTGP---IPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 151 ~l~~n~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
++++|.+++. .+..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++.+|. +.+++.
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 7777776642 224466667777777777777766666777777777777777777766554 555554
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=4.1e-18 Score=142.67 Aligned_cols=144 Identities=24% Similarity=0.241 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCC-------------------------CCcEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLR-------------------------RLRFI 126 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~-------------------------~L~~L 126 (218)
.++++.|++++|.++...+..+..+++|++|++++|.++...+..|..++ +|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 56788888888888855555677888888888888877743333444444 45555
Q ss_pred EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
++++|.++ .+|. +..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 191 ~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 55555554 3432 445556666666666666555666667777777777777777666666777777777777777777
Q ss_pred ccCCC-CCCCCC
Q 045729 207 GLLTI-FGRLRL 217 (218)
Q Consensus 207 ~~~p~-~~~l~~ 217 (218)
+.++. +..+++
T Consensus 269 ~~~~~~~~~l~~ 280 (440)
T 3zyj_A 269 LLPHDLFTPLHH 280 (440)
T ss_dssp CCCTTTTSSCTT
T ss_pred ccChhHhccccC
Confidence 76655 455544
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=8.5e-19 Score=140.57 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--CCccc--CCCCCCcEEEccCccccc--cCc-hhhcCCC
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--LPNEL--GQLRRLRFIRFGFNKLSG--SIP-TWIGVLS 145 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~ 145 (218)
+++++|++++|.+.+..+..+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|++++ .++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 5677777777777766667777777788888877776543 23333 667778888888877762 122 2334667
Q ss_pred CCCEEEccCCcccCCCC-ccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 146 KLQTLRLYNNSFTGPIP-NSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 146 ~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |.+..+++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~ 297 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQ 297 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCC
Confidence 88888888888876554 34456778888888888887 7777666 7788888888888876 44666654
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.2e-18 Score=142.06 Aligned_cols=144 Identities=24% Similarity=0.256 Sum_probs=102.0
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-------------------------CCCCCcEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-------------------------QLRRLRFI 126 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-------------------------~l~~L~~L 126 (218)
.++++.|++++|.+++..+..+..+++|++|++++|.++...+..|. ++++|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 56888899999988865556678888888888888888743333344 45555555
Q ss_pred EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
++++|.++ .+| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|++|++++|+++
T Consensus 202 ~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 202 NLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 55555555 333 2556667777777777777666777777788888888888887666777788888888888888888
Q ss_pred ccCCC-CCCCCC
Q 045729 207 GLLTI-FGRLRL 217 (218)
Q Consensus 207 ~~~p~-~~~l~~ 217 (218)
+.++. +..+++
T Consensus 280 ~~~~~~~~~l~~ 291 (452)
T 3zyi_A 280 SLPHDLFTPLRY 291 (452)
T ss_dssp CCCTTSSTTCTT
T ss_pred ccChHHhccccC
Confidence 77665 555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.8e-19 Score=143.34 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCC-----CCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccccc--Cchhh--c
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNL-----TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGS--IPTWI--G 142 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~ 142 (218)
.++++.|++++|.+++. |..+..+ ++|++|++++|.+++..|..+..+++|++|++++|++.+. +|..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 35566666666666544 4444444 5666666666666644445666666666666666665543 23333 5
Q ss_pred CCCCCCEEEccCCcccC--CCC-ccccCCCCCcEEecccCcccccCC-ccCCCCCCCCEEEccCCcCcccCCCC
Q 045729 143 VLSKLQTLRLYNNSFTG--PIP-NSLFNLSKLEVFNAMYNVIDGNIP-SRIGNFSSPFILNLGYNNLQGLLTIF 212 (218)
Q Consensus 143 ~l~~L~~L~l~~n~l~~--~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~ 212 (218)
.+++|++|++++|.+++ .++ ..+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++..++.+
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 66666666666666652 112 122356677777777777775554 34455677777777777777544433
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=147.93 Aligned_cols=144 Identities=23% Similarity=0.296 Sum_probs=92.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
++++.|++++|.+.+. ++.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 4555555555555532 2225566666666666666664444 3456667777777777776656666666677777777
Q ss_pred ccCCccc-CCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 152 LYNNSFT-GPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 152 l~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
+++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++.+|. +.++++
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 7777765 45666666777777777777777766666677777777777777777766654 555544
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.6e-18 Score=128.89 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=113.4
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 578999999999765 345788999999999999999977888899999999999999999977888999999999999
Q ss_pred ccCCc-ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 152 LYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 152 l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+++|. ++ .+| .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++.+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccCC
Confidence 99998 66 666 6889999999999999998 455 78899999999999999865
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.9e-18 Score=147.97 Aligned_cols=138 Identities=21% Similarity=0.183 Sum_probs=114.5
Q ss_pred EEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcc
Q 045729 78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 157 (218)
Q Consensus 78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 157 (218)
.+-++.+++ .+|+.+. +++++|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 455556666 6777654 5799999999999966667899999999999999999955566799999999999999999
Q ss_pred cCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc-CCC-CCCCCCC
Q 045729 158 TGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL-LTI-FGRLRLL 218 (218)
Q Consensus 158 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~-~~~l~~L 218 (218)
++..+..|.++++|++|++++|++++..+..++++++|++|++++|.+++. +|. ++.+++|
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 965556789999999999999999965566799999999999999999864 343 5555543
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-17 Score=144.43 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
++++.|++++|.+++..|..+.++++|++|++++|.++ .+|. .|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 34444444444444433444444445555555555444 2222 234445555555555554443344444444444444
Q ss_pred ccCCccc
Q 045729 152 LYNNSFT 158 (218)
Q Consensus 152 l~~n~l~ 158 (218)
+++|.++
T Consensus 178 L~~N~l~ 184 (597)
T 3oja_B 178 LSSNRLT 184 (597)
T ss_dssp CTTSCCS
T ss_pred CcCCCCC
Confidence 4444443
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=5e-18 Score=136.92 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=50.8
Q ss_pred CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEc
Q 045729 121 RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNL 200 (218)
Q Consensus 121 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 200 (218)
++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 34444444444444333445555566666666666665444445555666666666666665 55656666666666666
Q ss_pred cCCcCcccCC
Q 045729 201 GYNNLQGLLT 210 (218)
Q Consensus 201 ~~N~l~~~~p 210 (218)
++|++++.++
T Consensus 271 ~~N~i~~~~~ 280 (330)
T 1xku_A 271 HNNNISAIGS 280 (330)
T ss_dssp CSSCCCCCCT
T ss_pred CCCcCCccCh
Confidence 6666665544
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=1.8e-17 Score=136.59 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=17.0
Q ss_pred CCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729 169 SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 169 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence 3344444444444433344444444444444444444443
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=136.43 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=114.3
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCccccc--C--CcccCCCCCCcEEEccCccccccCch----hhcC
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGH--L--PNELGQLRRLRFIRFGFNKLSGSIPT----WIGV 143 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~ 143 (218)
.++++.|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 56899999999999877778889999999999999987642 2 223467889999999999997 4444 2567
Q ss_pred CCCCCEEEccCCcccCCCCccccCC---CCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 144 LSKLQTLRLYNNSFTGPIPNSLFNL---SKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 144 l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |.+..+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~ 295 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE 295 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence 8999999999999997778777766 69999999999999 7888775 7999999999999985 33444443
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.6e-17 Score=135.83 Aligned_cols=133 Identities=20% Similarity=0.151 Sum_probs=117.4
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEccC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 154 (218)
+.+++++++++ .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 37899999998 5777654 5689999999999966666677 899999999999999966667899999999999999
Q ss_pred CcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC
Q 045729 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 211 (218)
|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 999966666788999999999999999977788999999999999999999987665
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=5.1e-18 Score=130.89 Aligned_cols=142 Identities=23% Similarity=0.280 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCC-CcccCCcCCCCCCCCCEEEccC-CcccccCCcccCCCCCCcEEEccCccccccCch-----------
Q 045729 73 QRVTALNLSDIG-LGGTIPPHLGNLTFLVSLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT----------- 139 (218)
Q Consensus 73 ~~l~~l~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~----------- 139 (218)
++++.|++++|. ++...+..+.++++|++|++++ |.+++..+..|..+++|++|++++|.++ .+|.
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFF 133 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBCCSEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-ccccccccccccccc
Confidence 445555555554 4433333445555555555554 5554333334445555555555555444 2333
Q ss_pred ----------------hhcCCCCCC-EEEccCCcccCCCCccccCCCCCcEEecccCc-ccccCCccCCCC-CCCCEEEc
Q 045729 140 ----------------WIGVLSKLQ-TLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNF-SSPFILNL 200 (218)
Q Consensus 140 ----------------~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L 200 (218)
.+..+++|+ ++++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|++|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 344555555 5555555555 344333323555666666663 553334455566 66666666
Q ss_pred cCCcCcccCCC-CCCCC
Q 045729 201 GYNNLQGLLTI-FGRLR 216 (218)
Q Consensus 201 ~~N~l~~~~p~-~~~l~ 216 (218)
++|++++.++. +.+++
T Consensus 213 ~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 213 SQTSVTALPSKGLEHLK 229 (239)
T ss_dssp TTCCCCCCCCTTCTTCS
T ss_pred CCCccccCChhHhccCc
Confidence 66666655544 44444
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=144.65 Aligned_cols=137 Identities=20% Similarity=0.176 Sum_probs=111.5
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
+++++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67888999999888666677888889999999999988766778888899999999999888 67766 7888999999
Q ss_pred cCCcccC-CCCccccCCCCCcEEecccCcccccCCccCCCCCCC--CEEEccCCcC--cccCCC-CCCC
Q 045729 153 YNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP--FILNLGYNNL--QGLLTI-FGRL 215 (218)
Q Consensus 153 ~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~p~-~~~l 215 (218)
++|.+++ .+|..+.++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|. ++.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccc
Confidence 9998886 467888888999999999988875 356667777 8999999888 555554 5554
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.8e-18 Score=146.76 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
++++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence 4455555555555544444455555555555555555544444443 455555555555555522 22 22355555555
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+++|.+++ +|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|++.
T Consensus 198 Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 55555552 3333555555555555555555 24545555555555555555554
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.6e-17 Score=128.91 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=89.7
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++. ++ +..+++|++|++++|.++ .+|.. .. ++|++|++++|+++ .++ .+..+++|++|+
T Consensus 62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccC-CCh-hhcCcccccEEE
Confidence 46777778887777743 33 777777888888887777 34432 22 77788888888777 343 477777888888
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
+++|++++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+++..+
T Consensus 135 Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 135 IRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 88887773 43 567777888888888887744 56777778888888888776553
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.8e-17 Score=130.81 Aligned_cols=133 Identities=23% Similarity=0.359 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++ + +.+..+++|++|++++|.++ .++. +..+++|++|++++|.++ .++. +..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 85 TKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEEC
T ss_pred CCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEc
Confidence 445555555555543 2 23455555555555555555 2332 555555555555555555 2332 555566666666
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
++|.++ .++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|++++.++ +..++
T Consensus 159 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 159 GNAQVS-DLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp CSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred cCCcCC-CChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence 666665 2333 5566666666666666652 332 5566666666666666665543 44443
No 81
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=141.50 Aligned_cols=137 Identities=23% Similarity=0.238 Sum_probs=119.1
Q ss_pred CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEEccCccccccCch--hhcCCCCC
Q 045729 71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNE-LGQLRRLRFIRFGFNKLSGSIPT--WIGVLSKL 147 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L 147 (218)
..++++.|++++|.+++..+..+.++++|++|++++|.++ .+|.. +.++++|++|++++|+++ .+|. .+..+++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L 151 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence 4688999999999999877888999999999999999999 55554 889999999999999999 6665 78899999
Q ss_pred CEEEccCCc-ccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 148 QTLRLYNNS-FTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 148 ~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
++|++++|. +.+..+..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+...+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 999999994 66555678889999999999999999888889998888888888888776543
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=8.5e-18 Score=122.78 Aligned_cols=121 Identities=19% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCCCCCEEEccCCccc-ccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729 95 NLTFLVSLDVAHNNFR-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV 173 (218)
Q Consensus 95 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 173 (218)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4478999999999998 7889888999999999999999984 4 77889999999999999999768887778999999
Q ss_pred EecccCcccccCC--ccCCCCCCCCEEEccCCcCcccCC----CCCCCCCC
Q 045729 174 FNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGLLT----IFGRLRLL 218 (218)
Q Consensus 174 L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p----~~~~l~~L 218 (218)
|++++|.+++ +| ..+..+++|++|++++|++++.++ .+..+++|
T Consensus 100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 9999999984 44 688999999999999999999887 46666654
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=1.3e-17 Score=134.65 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=51.5
Q ss_pred CcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccC
Q 045729 123 LRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGY 202 (218)
Q Consensus 123 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 202 (218)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence 333444444444333344555566666666666666544455666666666666666666 5666666666666666666
Q ss_pred CcCcccCCC
Q 045729 203 NNLQGLLTI 211 (218)
Q Consensus 203 N~l~~~~p~ 211 (218)
|++++.++.
T Consensus 274 N~l~~~~~~ 282 (332)
T 2ft3_A 274 NNITKVGVN 282 (332)
T ss_dssp SCCCBCCTT
T ss_pred CCCCccChh
Confidence 666665443
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.2e-17 Score=130.20 Aligned_cols=136 Identities=29% Similarity=0.343 Sum_probs=107.1
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++.. + +..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+ ..+..+++|++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~-~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 140 (291)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred CCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCC-CC-hhhcCCCCCCEEE
Confidence 478889999999988543 3 888899999999999887 344 4888889999999999888 44 4577888899999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
+++|.+++ + ..+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +.+..+++|
T Consensus 141 l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L 202 (291)
T 1h6t_A 141 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNL 202 (291)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTC
T ss_pred ccCCcCCc-c-hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCCC-hhhccCCCC
Confidence 99998884 3 567788889999999998884 443 88888899999999888874 446655543
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=2.4e-17 Score=142.00 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=105.1
Q ss_pred CCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccc--cCchhhcCCCCCCEEEccCCcccCCCCcc-ccCCCC
Q 045729 94 GNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNS-LFNLSK 170 (218)
Q Consensus 94 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~ 170 (218)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 678899999999999998888899999999999999999985 33456889999999999999999756654 678899
Q ss_pred CcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
|+.|++++|.+++.+|..+. ++|++|++++|+++..++.+..+++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQAL 475 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCC
Confidence 99999999999887776654 78999999999999877766666654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3.2e-17 Score=131.25 Aligned_cols=135 Identities=21% Similarity=0.337 Sum_probs=113.9
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++ +++ +..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++. +..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCC-CCGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCC-Cchh-hcCCCCCCEEE
Confidence 5789999999999985 444 889999999999999998 444 6889999999999999998 4554 88999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++.++ +..+++
T Consensus 136 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 196 (308)
T 1h6u_A 136 LDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP-LASLPN 196 (308)
T ss_dssp CCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred CCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCC
Confidence 99999984 444 8889999999999999984 554 8899999999999999988654 444443
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=2.6e-18 Score=138.01 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC-CCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG-QLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++ .++. ...+++|++|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEEC
Confidence 344444444444433333444444455555555544433333332 3444555555555444 2222 123445555555
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 199 s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 555554 23333444555555555555554 34444445555555555555544
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=4.3e-18 Score=121.97 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=105.6
Q ss_pred CCCCCCEEEccCCccc-ccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcE
Q 045729 95 NLTFLVSLDVAHNNFR-GHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEV 173 (218)
Q Consensus 95 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 173 (218)
..++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999998 78998889999999999999999844 77889999999999999999768888888999999
Q ss_pred EecccCccccc-CCccCCCCCCCCEEEccCCcCcccCC----CCCCCCC
Q 045729 174 FNAMYNVIDGN-IPSRIGNFSSPFILNLGYNNLQGLLT----IFGRLRL 217 (218)
Q Consensus 174 L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~l~~ 217 (218)
|++++|.+++. .+..++.+++|++|++++|++++.++ .++.+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 99999999852 34789999999999999999999877 3554444
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=8.4e-18 Score=142.63 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc-CCCCCCEEEc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG-VLSKLQTLRL 152 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l 152 (218)
+++.|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 344444445554433332 357889999999999877777888899999999999999977777776 7899999999
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
++|.+++. |. ...+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++.++.++.++.|
T Consensus 177 s~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 177 QYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp TTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred CCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 99999854 33 4468999999999999995 5667889999999999999999977777776654
No 90
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=122.21 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCCCCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEE
Q 045729 56 ISYPICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFI 126 (218)
Q Consensus 56 ~~~~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 126 (218)
+..+.|.|..+.|... .++++.|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 5 P~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 5 PTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 4456678888888631 357999999999998 788899999999999999999997666789999999999
Q ss_pred EccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc
Q 045729 127 RFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG 183 (218)
Q Consensus 127 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 183 (218)
++++|++++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999996666789999999999999999995555568899999999999999864
No 91
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=6.9e-17 Score=120.69 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=102.4
Q ss_pred CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCch-hhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEeccc
Q 045729 100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT-WIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY 178 (218)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 178 (218)
+++++++|+++ .+|..+.. ++++|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 88876643 899999999999854443 488999999999999999988899999999999999999
Q ss_pred CcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 179 NVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 179 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
|++++..+..+..+++|++|++++|++++.+|. ++.+++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 999987788899999999999999999998775 7777654
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1e-16 Score=140.77 Aligned_cols=144 Identities=25% Similarity=0.243 Sum_probs=89.8
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCC-cccCCCCCCcEEEccCcccccc----------------
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLP-NELGQLRRLRFIRFGFNKLSGS---------------- 136 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~---------------- 136 (218)
.++.+++++|.+++..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|++.+.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 56667777777776667777777777777777777766555 4566677777777777765533
Q ss_pred ----------CchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccC----C----ccCCCCCCCCEE
Q 045729 137 ----------IPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNI----P----SRIGNFSSPFIL 198 (218)
Q Consensus 137 ----------~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~----p----~~~~~l~~L~~L 198 (218)
+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.. | ..+..+++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 3445555566666666666666444444566666666666666665321 1 125566666666
Q ss_pred EccCCcCcccCCC-CCCCCC
Q 045729 199 NLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 199 ~L~~N~l~~~~p~-~~~l~~ 217 (218)
++++|.++..++. |+.+++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCCCCCCCHHHcccccC
Confidence 6666666655543 555544
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2e-17 Score=132.87 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=109.2
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhh-cCCCCCCEEE
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWI-GVLSKLQTLR 151 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ 151 (218)
++++.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 3455555555555543332 35788999999999986666678889999999999999986666665 4789999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
+++|.+++ ++. ...+++|+.|++++|.++ .+|..+..+++|++|++++|++++.++.+..+++|
T Consensus 176 L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 176 LQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp CTTSCCCE-EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred CCCCcCcc-ccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 99999984 333 345899999999999998 56667899999999999999999877777776654
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=6.1e-17 Score=138.77 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=120.1
Q ss_pred EEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcc
Q 045729 78 LNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSF 157 (218)
Q Consensus 78 l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 157 (218)
.+.++++++ .+|+.+. +++++|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 789999998 7787664 8999999999999977788899999999999999999977778899999999999999999
Q ss_pred cCCCCccccCCCCCcEEecccCcccc-cCCccCCCCCCCCEEEccCCcC-cccCC-CCCCCCCC
Q 045729 158 TGPIPNSLFNLSKLEVFNAMYNVIDG-NIPSRIGNFSSPFILNLGYNNL-QGLLT-IFGRLRLL 218 (218)
Q Consensus 158 ~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l-~~~~p-~~~~l~~L 218 (218)
++..|..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+ ...++ .++++++|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 97666679999999999999999985 3577899999999999999984 44443 37777653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1e-16 Score=127.31 Aligned_cols=136 Identities=21% Similarity=0.315 Sum_probs=116.9
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.+++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++ .+|. +..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEE
Confidence 4678999999999884 44 4888999999999999998 4554 899999999999999998 4554 89999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
+++|.+++ + ..+..+++|+.|++++|.+++ + ..++.+++|++|++++|.+++.++ +..+++|
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL 180 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence 99999984 4 568899999999999999984 4 578999999999999999998766 6666554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=7.9e-17 Score=139.78 Aligned_cols=135 Identities=29% Similarity=0.347 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+.+..+ +..+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+ ..+..+++|+.|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY 137 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCC-CC-GGGGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCC-CC-ccccCCCccCEEE
Confidence 4677777777777774333 667777777777777776 333 5667777777777777776 33 3466777777777
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+++|.+++ + ..+..+++|+.|++++|.+++..| +..+++|+.|+|++|.+++. |.+..+++
T Consensus 138 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~ 198 (605)
T 1m9s_A 138 LGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKN 198 (605)
T ss_dssp CCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTT
T ss_pred CCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCC
Confidence 77777763 3 456667777777777777764333 66677777777777776664 44554444
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=135.04 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCcccCCcCC--CCCCCCCEEEccCCcccccCC----cccCCCCCCcEEEccCccccccCchhhcCCCCC
Q 045729 74 RVTALNLSDIGLGGTIPPHL--GNLTFLVSLDVAHNNFRGHLP----NELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKL 147 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 147 (218)
+++.|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 36666666666666555555 555555555555555553332 122334555555555555543333444455555
Q ss_pred CEEEccCCcccC---------------------------CCCc----cccCCCCCcEEecccCcccccCCccCCCC---C
Q 045729 148 QTLRLYNNSFTG---------------------------PIPN----SLFNLSKLEVFNAMYNVIDGNIPSRIGNF---S 193 (218)
Q Consensus 148 ~~L~l~~n~l~~---------------------------~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~ 193 (218)
++|++++|++.+ .++. .+..+++|++|++++|.+++..|+.+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555555554321 2222 12455677777777777776556666655 5
Q ss_pred CCCEEEccCCcCcccCCC
Q 045729 194 SPFILNLGYNNLQGLLTI 211 (218)
Q Consensus 194 ~L~~L~L~~N~l~~~~p~ 211 (218)
+|++|++++|+++..++.
T Consensus 252 ~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp TCCCEECCSSCCCSCCSC
T ss_pred cCCEEECCCCCCCchhhh
Confidence 777777777777755443
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.71 E-value=2.6e-17 Score=121.20 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=110.3
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCC-CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCc-hhhcCCCCCCE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLT-FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIP-TWIGVLSKLQT 149 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~ 149 (218)
..+++.|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+| ..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 467999999999998 4554 55554 999999999999954 57889999999999999999 455 44589999999
Q ss_pred EEccCCcccCCCCc--cccCCCCCcEEecccCcccccCCcc----CCCCCCCCEEEccCCcCcc
Q 045729 150 LRLYNNSFTGPIPN--SLFNLSKLEVFNAMYNVIDGNIPSR----IGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 150 L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~ 207 (218)
|++++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|....
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999997 6776 7889999999999999998 67764 8899999999999997653
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=143.35 Aligned_cols=139 Identities=19% Similarity=0.197 Sum_probs=121.7
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccC-chhhcCCCCCCEEEccC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSI-PTWIGVLSKLQTLRLYN 154 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~ 154 (218)
...+.++++++ .+|. -.+++++|++++|.+++..|..|.++++|++|++++|...+.+ |..|..+++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 45677788888 6676 3479999999999999888889999999999999999666566 67899999999999999
Q ss_pred CcccCCCCccccCCCCCcEEecccCcccccCCcc--CCCCCCCCEEEccCCcCcccCC--CCCCCCCC
Q 045729 155 NSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSR--IGNFSSPFILNLGYNNLQGLLT--IFGRLRLL 218 (218)
Q Consensus 155 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p--~~~~l~~L 218 (218)
|.+++..|..+.++++|++|++++|.+++.+|.. ++++++|++|++++|.+++..+ .|+++++|
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 9999888999999999999999999999777765 8999999999999999998765 37777765
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=1.1e-16 Score=129.74 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=97.8
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.+++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.++ .+ +.+..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNV 272 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEEC
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEc
Confidence 445555555555543222 566777888888888777 3444 777888888888888877 34 35777888888888
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
++|.+++ + +.+..+++|+.|++++|.+++..|..++.+++|++|++++|++++.+| +..+++
T Consensus 273 ~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 273 GSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSK 334 (347)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTT
T ss_pred cCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhc
Confidence 8888874 3 357778888888888888887777778888888999999888888766 444443
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.5e-18 Score=152.19 Aligned_cols=137 Identities=25% Similarity=0.342 Sum_probs=116.2
Q ss_pred CCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEE
Q 045729 71 RHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTL 150 (218)
Q Consensus 71 ~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 150 (218)
....++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|++|++++|.++ .+|..++.+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 3578999999999998 78888889999999999999999 89999999999999999999999 899999999999999
Q ss_pred EccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCC-CCEEEccCCcCcccCCC
Q 045729 151 RLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSS-PFILNLGYNNLQGLLTI 211 (218)
Q Consensus 151 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~ 211 (218)
++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 99999998 88999999999999999999999877766543211 12244555555554443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=1.5e-16 Score=137.02 Aligned_cols=133 Identities=24% Similarity=0.324 Sum_probs=83.9
Q ss_pred CCCCCCCC-----cccee-eeCCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729 54 WSISYPIC-----TWIGI-SCGSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127 (218)
Q Consensus 54 w~~~~~~c-----~w~gv-~c~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 127 (218)
|.....+| .|.++ .|.. .+++.|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 65555667 68888 6753 467888888888875 666553 67777777777777 566 3456777777
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 77777763 565 443 66666666666663 444 34556666666666553 443 34455555555555555
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.68 E-value=4.1e-16 Score=114.30 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=84.3
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
+.+++++|+++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 35677778877 5776653 78899999999998666777888999999999999998544455678889999999999
Q ss_pred cccCCCCccccCCCCCcEEecccCccccc
Q 045729 156 SFTGPIPNSLFNLSKLEVFNAMYNVIDGN 184 (218)
Q Consensus 156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 184 (218)
++++..+..+..+++|+.|++++|.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 98855555678888899999999988744
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=3.7e-16 Score=131.70 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..+++|++|++
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEEC
Confidence 455666666666553322 5556666666666666652 332 5566666666666666663 322 556666666666
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~ 216 (218)
++|.+++..| +..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+| +..++
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~ 375 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLT 375 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCT
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCC
Confidence 6666664333 45566666666666666532 356666666666666666666555 44443
No 105
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.67 E-value=2.8e-16 Score=115.63 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=84.3
Q ss_pred EEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 76 TALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 76 ~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
+.++++++++. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46888888886 6777664 88999999999998766778888999999999999998433344678889999999999
Q ss_pred cccCCCCccccCCCCCcEEecccCcccc
Q 045729 156 SFTGPIPNSLFNLSKLEVFNAMYNVIDG 183 (218)
Q Consensus 156 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 183 (218)
.+++..+..+..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9884444457888899999999998873
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.6e-16 Score=121.83 Aligned_cols=135 Identities=24% Similarity=0.293 Sum_probs=115.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|+++ .++ .+..+++|++|++++|.++ .++. +..+++|++|++++|+++ .+|... . ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEE
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEE
Confidence 468999999999998 455 6889999999999999998 5555 899999999999999998 566533 3 8999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
+++|.+++ ++ .+..+++|+.|++++|++++ ++ .++.+++|++|++++|++++. +.+..+++|
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 99999994 44 58899999999999999984 55 788999999999999999987 667666654
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.2e-16 Score=135.16 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=100.6
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729 98 FLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM 177 (218)
Q Consensus 98 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 177 (218)
.|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5788999999998 5776 899999999999999999 899999999999999999999994 77 78999999999999
Q ss_pred cCcccccC-CccCCCCCCCCEEEccCCcCcccCCCCC
Q 045729 178 YNVIDGNI-PSRIGNFSSPFILNLGYNNLQGLLTIFG 213 (218)
Q Consensus 178 ~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 213 (218)
+|.+++.. |..++.+++|+.|++++|++++.+|...
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 99999765 8999999999999999999999887643
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=4e-16 Score=134.50 Aligned_cols=121 Identities=26% Similarity=0.285 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECC
Confidence 47889999999995 676 999999999999999999 89999999999999999999999 578 79999999999999
Q ss_pred CCcccCCC-CccccCCCCCcEEecccCcccccCCccC----CCCCCCCEEEc
Q 045729 154 NNSFTGPI-PNSLFNLSKLEVFNAMYNVIDGNIPSRI----GNFSSPFILNL 200 (218)
Q Consensus 154 ~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L 200 (218)
+|.+++.. |..+..+++|+.|++++|.+++..| .. ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 99999765 9999999999999999999996544 33 34789998864
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=7.1e-16 Score=113.50 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999999966666788999999999999999955555678999999999999999955555678999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIP 186 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 186 (218)
+++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999995444456789999999999999986554
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=8.8e-20 Score=137.05 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=56.1
Q ss_pred CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729 92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 171 (218)
.+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 4445555555555555555 244 4445555555555555555 445444444555555555555552 33 34445555
Q ss_pred cEEecccCcccccCC--ccCCCCCCCCEEEccCCcCccc
Q 045729 172 EVFNAMYNVIDGNIP--SRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 172 ~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
++|++++|.+++ ++ ..+..+++|++|++++|++.+.
T Consensus 118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555555542 22 2344555555555555555444
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=7.3e-16 Score=133.75 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=117.6
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
..+++.|++++|.+.. ++ .+..+++|+.|++++|.+++ +++ +..+++|+.|++++|.++ .+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence 4678899999999874 44 58899999999999999984 454 889999999999999998 455 688999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRLL 218 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~L 218 (218)
+++|.+++ + ..+..+++|+.|++++|.+++ + ..+..+++|+.|+|++|.+.+.+| +..+++|
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 177 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL 177 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCC
Confidence 99999994 4 458899999999999999985 4 678999999999999999998877 6666654
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=5.9e-16 Score=125.40 Aligned_cols=127 Identities=23% Similarity=0.340 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++. ++ +..+++|++|++++|.+++ + +.+..+++|++|++++|.++ .+ +.+..+++|++|+
T Consensus 220 ~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEE
Confidence 57899999999999854 33 8899999999999999984 4 46889999999999999998 45 4588999999999
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+++|.+++..|..+..+++|+.|++++|.+++..| +..+++|++|++++|+++
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999998788889999999999999999995444 888999999999999886
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.4e-16 Score=116.04 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=96.4
Q ss_pred CCCCCCCCCEEEccCCcccccCCcccCCC-CCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729 92 HLGNLTFLVSLDVAHNNFRGHLPNELGQL-RRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK 170 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 170 (218)
.+....+|++|++++|.++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3567789999999999998 5665 4444 499999999999994 4 67889999999999999999543344588999
Q ss_pred CcEEecccCcccccCCc--cCCCCCCCCEEEccCCcCcccCC
Q 045729 171 LEVFNAMYNVIDGNIPS--RIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 171 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
|++|++++|.++ .+|. .++.+++|++|++++|+++..++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 999999999997 6776 78899999999999999987655
No 114
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=2.4e-15 Score=110.18 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=61.3
Q ss_pred CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729 100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179 (218)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N 179 (218)
+++++++|.++ .+|..+. +++++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45666666665 4554432 55666666666666444555666666666666666666433334455666666666666
Q ss_pred cccccCCccCCCCCCCCEEEccCCcCcccC
Q 045729 180 VIDGNIPSRIGNFSSPFILNLGYNNLQGLL 209 (218)
Q Consensus 180 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 209 (218)
++++..+..+..+++|++|++++|+++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 666433334556666666666666655443
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=3.6e-16 Score=136.00 Aligned_cols=94 Identities=27% Similarity=0.435 Sum_probs=53.9
Q ss_pred CCCCCCCCccceeee------CCCCCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEE
Q 045729 54 WSISYPICTWIGISC------GSRHQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIR 127 (218)
Q Consensus 54 w~~~~~~c~w~gv~c------~~~~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 127 (218)
|....++|.|.|..+ .....+++.+++++|+++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE 87 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence 665667777755321 111234666677766666 5555443 56666666666666 4554 345666666
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCccc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFT 158 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 158 (218)
+++|+++ .+|. .+++|++|++++|.++
T Consensus 88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 88 VSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp ECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred cCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 6666665 4554 4455566666655555
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=1.7e-15 Score=127.67 Aligned_cols=134 Identities=25% Similarity=0.350 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++. +.+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L 294 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLEL 294 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEc
Confidence 4455555555555431 2345566666666666666532 22 5566666666666666663 333 566667777777
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
++|.+++ ++. +..+++|+.|++++|.+++..| +..+++|++|++++|++++. +.++.+++
T Consensus 295 ~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~ 354 (466)
T 1o6v_A 295 NENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTN 354 (466)
T ss_dssp CSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTT
T ss_pred CCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCC
Confidence 7776663 222 5666777777777777764433 56677777777777777764 44555444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=3.4e-15 Score=128.52 Aligned_cols=124 Identities=24% Similarity=0.355 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
++++.|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEEC
Confidence 445555555555553 443 332 45555555555542 443 3445555555555554 2443 3345555555
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCC-------CEEEccCCcCcccCCCCCCCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP-------FILNLGYNNLQGLLTIFGRLR 216 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~l~ 216 (218)
++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++.+++.+.+++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence 5555542 444 32 45555555555554 4444 322 34 555555555554333333333
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=5.6e-15 Score=124.35 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++. | +..+++|++|++++|.+++ ++ +..+++|++|++++|++++ +| ++.+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 46777777777777753 3 6777777888888777774 33 6677778888888887773 44 67777788888
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
+++|.+++ ++ +..+++|+.|++++|...+.+ .++.+++|++|++++|.+++.+ ++.+++
T Consensus 134 l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~ 192 (457)
T 3bz5_A 134 CARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKL 192 (457)
T ss_dssp CTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred CCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCC
Confidence 88887774 33 667778888888888655455 4777888888888888888743 444443
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=6.4e-15 Score=123.99 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++. + +.++++|++|++++|.+++ +| +..+++|++|++++|++++ ++ ++.+++|++|+
T Consensus 84 l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEE
Confidence 46677777777777753 3 6677777777777777773 44 6677777777777777774 33 66777777777
Q ss_pred ccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCccc
Q 045729 152 LYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 152 l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
+++|...+.+ .+..+++|+.|++++|++++ +| ++.+++|+.|++++|.+++.
T Consensus 155 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 155 CHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 7777544444 35667777777777777774 44 66777777777777777765
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.61 E-value=6.2e-15 Score=108.40 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=81.8
Q ss_pred CEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccC
Q 045729 100 VSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYN 179 (218)
Q Consensus 100 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N 179 (218)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 7776654 77888888888888666777888888888888888888543444577888888888888
Q ss_pred cccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 180 VIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 180 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++++..+..+..+++|++|++++|++....+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8884434457788888888888888776544
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=2.1e-17 Score=133.25 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=39.4
Q ss_pred CcEEEEEcCCCCCccc-CCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCc-cccc-cCchhhcCCCCCCE
Q 045729 73 QRVTALNLSDIGLGGT-IPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFN-KLSG-SIPTWIGVLSKLQT 149 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~ 149 (218)
++++.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4455555555554433 4444444555555555555554444444444555555555555 3432 13333444444444
Q ss_pred EEccCC
Q 045729 150 LRLYNN 155 (218)
Q Consensus 150 L~l~~n 155 (218)
|++++|
T Consensus 173 L~l~~~ 178 (336)
T 2ast_B 173 LNLSWC 178 (336)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 444444
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=1e-14 Score=122.64 Aligned_cols=124 Identities=28% Similarity=0.388 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEc
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRL 152 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 152 (218)
+++++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+ ++|++|++++|+++ .+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEEC
Confidence 456666666666664 55 4666666777777666666 344322 35666666666666 345 3666666666666
Q ss_pred cCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCC
Q 045729 153 YNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLT 210 (218)
Q Consensus 153 ~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 210 (218)
++|.+++ +|... ++|+.|++++|.++ .+| .++.+++|++|++++|++++.++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc
Confidence 6666663 33321 35666666666665 555 36666777777777776666443
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=4.1e-15 Score=120.96 Aligned_cols=158 Identities=18% Similarity=0.054 Sum_probs=107.3
Q ss_pred CCCccceeeeCCC---------CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCc-ccCCCCCCcE-EE
Q 045729 59 PICTWIGISCGSR---------HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPN-ELGQLRRLRF-IR 127 (218)
Q Consensus 59 ~~c~w~gv~c~~~---------~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L~ 127 (218)
+.|.|..|.|... .++++.|++++|+++...+..|.++++|++|++++|.+.+.+|. .|.++++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 5588999999631 25789999999999954455789999999999999998756664 5788888765 56
Q ss_pred ccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC--------------------------CcEEecccCcc
Q 045729 128 FGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK--------------------------LEVFNAMYNVI 181 (218)
Q Consensus 128 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~--------------------------L~~L~L~~N~l 181 (218)
+..|+++...|..|..+++|++|++++|.+++..+..+....+ ++.|++++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 6778998555678899999999999999887433333323233 44555555555
Q ss_pred cccCCccCCCCCCCCEEEccC-CcCcccCCC-CCCCCC
Q 045729 182 DGNIPSRIGNFSSPFILNLGY-NNLQGLLTI-FGRLRL 217 (218)
Q Consensus 182 ~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~-~~~l~~ 217 (218)
+ .+|.......+|+.+++++ |.++.+++. |..+++
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 5 3444444444555565553 344443333 444443
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.3e-16 Score=128.63 Aligned_cols=133 Identities=15% Similarity=0.189 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCC-ccccc-CCcccCCCCCCcEEEccCc-ccccc-CchhhcCCC-C
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN-NFRGH-LPNELGQLRRLRFIRFGFN-KLSGS-IPTWIGVLS-K 146 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~ 146 (218)
.+++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 578999999999998888888888999999999999 67642 5666778899999999999 88753 567788888 9
Q ss_pred CCEEEccCC--ccc-CCCCccccCCCCCcEEecccCc-ccccCCccCCCCCCCCEEEccCCc
Q 045729 147 LQTLRLYNN--SFT-GPIPNSLFNLSKLEVFNAMYNV-IDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 147 L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 999999999 444 3456667788999999999998 676677788888999999999985
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=6e-14 Score=117.96 Aligned_cols=108 Identities=28% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEec
Q 045729 97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNA 176 (218)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 176 (218)
++|++|++++|.++ .+| .+.++++|++|++++|+++ .+|.. .++|++|++++|.+++ +| .+.++++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 45666666666666 355 4666666666666666666 34442 2366666666666663 44 4666667777777
Q ss_pred ccCcccccCCccCCCCCCCCEEEccCCcCcccCCCCCCCCC
Q 045729 177 MYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTIFGRLRL 217 (218)
Q Consensus 177 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~l~~ 217 (218)
++|.+++ +|... ++|++|++++|.++. +|.++.+++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~~-lp~~~~l~~ 238 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILEE-LPELQNLPF 238 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTT
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCCc-ccccCCCCC
Confidence 7776663 44322 466777777777663 445555554
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=5.3e-16 Score=127.65 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCCc-ccCC---cCCCCCCCCCEEEccCCcccc-----cCCcccCCCCCCcEEEccCcccc----ccCch
Q 045729 73 QRVTALNLSDIGLG-GTIP---PHLGNLTFLVSLDVAHNNFRG-----HLPNELGQLRRLRFIRFGFNKLS----GSIPT 139 (218)
Q Consensus 73 ~~l~~l~l~~~~l~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~ 139 (218)
++++.|++++|.++ +.++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46777777777765 2333 345566778888888887762 23335667778888888888874 45677
Q ss_pred hhcCCCCCCEEEccCCcccCC----CCcccc--CCCCCcEEecccCcccc----cCCccC-CCCCCCCEEEccCCcCccc
Q 045729 140 WIGVLSKLQTLRLYNNSFTGP----IPNSLF--NLSKLEVFNAMYNVIDG----NIPSRI-GNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 140 ~~~~l~~L~~L~l~~n~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~ 208 (218)
.+..+++|++|++++|.+++. +|..+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 777788888888888877643 455553 37788888888888875 366666 5578888888888887765
Q ss_pred C
Q 045729 209 L 209 (218)
Q Consensus 209 ~ 209 (218)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=1.2e-13 Score=120.21 Aligned_cols=73 Identities=26% Similarity=0.310 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
+++.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|+.|++++|+++ .+|.. +++|++|+++
T Consensus 82 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 82 ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVS 149 (622)
T ss_dssp TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECc
Confidence 3444444444443 2332 3344444444444444 2332 2344445555555444 33332 2455555555
Q ss_pred CCccc
Q 045729 154 NNSFT 158 (218)
Q Consensus 154 ~n~l~ 158 (218)
+|.++
T Consensus 150 ~N~l~ 154 (622)
T 3g06_A 150 DNQLA 154 (622)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 55555
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=8.9e-14 Score=112.69 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCccceeeeCCCCCcEEEEEcCCC-CCcccCCcCCCCCCCCCEEEccC-CcccccCCcccCCCCCCcEEEccCccccccC
Q 045729 60 ICTWIGISCGSRHQRVTALNLSDI-GLGGTIPPHLGNLTFLVSLDVAH-NNFRGHLPNELGQLRRLRFIRFGFNKLSGSI 137 (218)
Q Consensus 60 ~c~w~gv~c~~~~~~l~~l~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 137 (218)
.|.|..+.| +++ +++ .+|. +..+++|++|++++ |.+++..+..|.++++|++|+|++|++++..
T Consensus 7 ~C~~~~v~~------------~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRC------------TRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEEC------------CSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEc------------CCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 477766655 444 566 5788 89999999999996 9999666678999999999999999999777
Q ss_pred chhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccc
Q 045729 138 PTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDG 183 (218)
Q Consensus 138 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 183 (218)
|..|..+++|++|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77889999999999999999944333444444 9999999998873
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=9.6e-16 Score=126.10 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=95.5
Q ss_pred CCcEEEEEcCCCC---CcccCCcCC-------CCCCCCCEEEccCCcccc----cCCcccCCCCCCcEEEccCccccccC
Q 045729 72 HQRVTALNLSDIG---LGGTIPPHL-------GNLTFLVSLDVAHNNFRG----HLPNELGQLRRLRFIRFGFNKLSGSI 137 (218)
Q Consensus 72 ~~~l~~l~l~~~~---l~~~~~~~l-------~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~ 137 (218)
.++++.|++++|. +++.+|..+ ..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 4678888888753 444455443 577888888888888875 35666777888888888888876433
Q ss_pred chhh----cCC---------CCCCEEEccCCccc-CCCC---ccccCCCCCcEEecccCccc--c---cCCccCCCCCCC
Q 045729 138 PTWI----GVL---------SKLQTLRLYNNSFT-GPIP---NSLFNLSKLEVFNAMYNVID--G---NIPSRIGNFSSP 195 (218)
Q Consensus 138 p~~~----~~l---------~~L~~L~l~~n~l~-~~~p---~~l~~l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L 195 (218)
+..+ ..+ ++|++|++++|.++ +.+| ..+..+++|+.|++++|.++ | ..|..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 3333 333 78888888888886 3344 35567788888888888886 2 234477788889
Q ss_pred CEEEccCCcCc
Q 045729 196 FILNLGYNNLQ 206 (218)
Q Consensus 196 ~~L~L~~N~l~ 206 (218)
++|++++|.++
T Consensus 219 ~~L~Ls~n~l~ 229 (386)
T 2ca6_A 219 KVLDLQDNTFT 229 (386)
T ss_dssp CEEECCSSCCH
T ss_pred cEEECcCCCCC
Confidence 99999998885
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=8.8e-14 Score=112.71 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=90.7
Q ss_pred CEEEccCC-cccccCCcccCCCCCCcEEEccC-ccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecc
Q 045729 100 VSLDVAHN-NFRGHLPNELGQLRRLRFIRFGF-NKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAM 177 (218)
Q Consensus 100 ~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 177 (218)
..++.+++ +++ .+|. +..+++|+.|++++ |++++..+..|..+++|++|++++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45688888 898 7898 99999999999996 99996666789999999999999999998888889999999999999
Q ss_pred cCcccccCCccCCCCCCCCEEEccCCcCcc
Q 045729 178 YNVIDGNIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 178 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
+|++++..+..+..++ |+.|++++|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999954444455554 9999999999874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=7.5e-17 Score=120.96 Aligned_cols=128 Identities=20% Similarity=0.194 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEE
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLR 151 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 151 (218)
.++++.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEE
Confidence 4789999999999986 66 8889999999999999998 78887777899999999999999 566 688899999999
Q ss_pred ccCCcccCCCC--ccccCCCCCcEEecccCcccccCCcc----------CCCCCCCCEEEccCCcCcc
Q 045729 152 LYNNSFTGPIP--NSLFNLSKLEVFNAMYNVIDGNIPSR----------IGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 152 l~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~L~~N~l~~ 207 (218)
+++|.++ .++ ..+..+++|++|++++|.+++..|.. +..+++|+.|+ +|.++.
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999998 444 36889999999999999998766543 78899999987 666653
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2.8e-15 Score=122.39 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=90.0
Q ss_pred cEEEEEcCCCCCcccCCcCCCCC-----CCCCEEEccCCcccccCCcc----cCCC-CCCcEEEccCccccccCchhhc-
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNL-----TFLVSLDVAHNNFRGHLPNE----LGQL-RRLRFIRFGFNKLSGSIPTWIG- 142 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p~~~~- 142 (218)
+++.|++++|.+++..+..+..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 68888888888776555555543 77888888888887554443 3333 6788888888888754444332
Q ss_pred ---C-CCCCCEEEccCCcccCCCC----ccccCCC-CCcEEecccCcccccCCccC----CCC-CCCCEEEccCCcCcc
Q 045729 143 ---V-LSKLQTLRLYNNSFTGPIP----NSLFNLS-KLEVFNAMYNVIDGNIPSRI----GNF-SSPFILNLGYNNLQG 207 (218)
Q Consensus 143 ---~-l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~ 207 (218)
. .++|++|++++|.+++..+ ..+...+ +|+.|++++|.+++..+..+ ... ++|++|++++|.++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 3 3578888888888774332 3334454 78888888888875554333 344 488888888888776
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.3e-14 Score=117.00 Aligned_cols=139 Identities=21% Similarity=0.136 Sum_probs=110.3
Q ss_pred CCcEEEEEcCCCCCcccCC----cCCCCCC-CCCEEEccCCcccccCCcccCCC-----CCCcEEEccCccccccCchhh
Q 045729 72 HQRVTALNLSDIGLGGTIP----PHLGNLT-FLVSLDVAHNNFRGHLPNELGQL-----RRLRFIRFGFNKLSGSIPTWI 141 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~ 141 (218)
.++++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4569999999999986655 6677888 89999999999997667666654 899999999999986666544
Q ss_pred ----cCC-CCCCEEEccCCcccCCCCccc----cC-CCCCcEEecccCcccccC----CccCCCCC-CCCEEEccCCcCc
Q 045729 142 ----GVL-SKLQTLRLYNNSFTGPIPNSL----FN-LSKLEVFNAMYNVIDGNI----PSRIGNFS-SPFILNLGYNNLQ 206 (218)
Q Consensus 142 ----~~l-~~L~~L~l~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~~----p~~~~~l~-~L~~L~L~~N~l~ 206 (218)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 899999999999986555443 33 369999999999998533 33445555 9999999999998
Q ss_pred ccCC
Q 045729 207 GLLT 210 (218)
Q Consensus 207 ~~~p 210 (218)
+..+
T Consensus 181 ~~~~ 184 (362)
T 3goz_A 181 SKNC 184 (362)
T ss_dssp GSCH
T ss_pred hhhH
Confidence 7654
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=3.5e-13 Score=109.50 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=105.4
Q ss_pred CCcEEEEEcCCCCCcccCCc-CCCCCCCCCE-EEccCCcccccCCcccCCCCCCcEEEccCccccccCch----------
Q 045729 72 HQRVTALNLSDIGLGGTIPP-HLGNLTFLVS-LDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPT---------- 139 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~-~l~~l~~L~~-L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~---------- 139 (218)
.++++.|++++|.+.+.+|. .|.+++++++ +.+..|+++...|..|..+++|++|++++|++++..+.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 57889999999988666654 5677777665 55566888755566788888888888888877632211
Q ss_pred ---------------hhcCC-CCCCEEEccCCcccCCCCccccCCCCCcEEeccc-CcccccCCc-cCCCCCCCCEEEcc
Q 045729 140 ---------------WIGVL-SKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMY-NVIDGNIPS-RIGNFSSPFILNLG 201 (218)
Q Consensus 140 ---------------~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~-~~~~l~~L~~L~L~ 201 (218)
.+..+ ..+++|++++|.++ .+|.......+|+.+++++ |.++ .+|. .|..+++|++|+++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcC
Confidence 11222 35778889999888 5666666677899999985 5565 6765 57899999999999
Q ss_pred CCcCcccCCC-CCCCCC
Q 045729 202 YNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 202 ~N~l~~~~p~-~~~l~~ 217 (218)
+|+++..++. +.++++
T Consensus 211 ~N~l~~lp~~~~~~L~~ 227 (350)
T 4ay9_X 211 RTRIHSLPSYGLENLKK 227 (350)
T ss_dssp TSCCCCCCSSSCTTCCE
T ss_pred CCCcCccChhhhccchH
Confidence 9999988775 666654
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=5.7e-15 Score=123.85 Aligned_cols=135 Identities=17% Similarity=0.094 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCCCccc----CCcCCCCCCCCCEEEccCCcccccCCcccC-----CCCCCcEEEccCcccccc----Cch
Q 045729 73 QRVTALNLSDIGLGGT----IPPHLGNLTFLVSLDVAHNNFRGHLPNELG-----QLRRLRFIRFGFNKLSGS----IPT 139 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~ 139 (218)
++++.|++++|.++.. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4566666666666542 344455566666666666666533222222 224677777777776643 345
Q ss_pred hhcCCCCCCEEEccCCcccCCCCccccC-----CCCCcEEecccCcccc----cCCccCCCCCCCCEEEccCCcCcc
Q 045729 140 WIGVLSKLQTLRLYNNSFTGPIPNSLFN-----LSKLEVFNAMYNVIDG----NIPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
.+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 5566778888888888776443333321 5688888888888875 567777778888888888888765
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.33 E-value=1.5e-14 Score=121.26 Aligned_cols=112 Identities=16% Similarity=0.061 Sum_probs=55.6
Q ss_pred CCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCccccccCchhhcC-----CCCCCEEEccCCcccCC----CC
Q 045729 96 LTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGSIPTWIGV-----LSKLQTLRLYNNSFTGP----IP 162 (218)
Q Consensus 96 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~----~p 162 (218)
+++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44455555555544421 3333444455555555555544322222211 13555555555555432 23
Q ss_pred ccccCCCCCcEEecccCcccccCCccCCC-----CCCCCEEEccCCcCcc
Q 045729 163 NSLFNLSKLEVFNAMYNVIDGNIPSRIGN-----FSSPFILNLGYNNLQG 207 (218)
Q Consensus 163 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~ 207 (218)
..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 34445566777777777665433332221 4567777777776663
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=3.8e-13 Score=110.24 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCCCcccCCcCC-CCCCCCCEEEccCCcccccCCccc-----CCCCCCcEEEccCccccc----cCchhhc
Q 045729 73 QRVTALNLSDIGLGGTIPPHL-GNLTFLVSLDVAHNNFRGHLPNEL-----GQLRRLRFIRFGFNKLSG----SIPTWIG 142 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~----~~p~~~~ 142 (218)
.+++.|++++|.++......+ ..+++|++|++++|.++......+ ...++|++|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 689999999999875433222 235689999999999974333333 246789999999999874 2444557
Q ss_pred CCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCcc
Q 045729 143 VLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
..++|++|++++|.+++. ++..+...++|+.|++++|.++.. ++..+...++|++|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 789999999999998742 345567778999999999999742 33445567899999999999874
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.3e-10 Score=93.56 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=78.7
Q ss_pred CCCCcEEEccCccccccCc-hhhcCCCCCCEEEccCCcccCCCCccccCCCCCc-EEecccCcccccCCccCCCCCCCCE
Q 045729 120 LRRLRFIRFGFNKLSGSIP-TWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLE-VFNAMYNVIDGNIPSRIGNFSSPFI 197 (218)
Q Consensus 120 l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~ 197 (218)
+++|+.+++++|.++ .+| ..|..+++|+.+++.+| ++..-+..|.++.+|+ .+++.+ .++..-+..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 678999999999888 555 47888999999999988 6645566788999999 999988 676455678999999999
Q ss_pred EEccCCcCcccCCC-CCCCCCC
Q 045729 198 LNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 198 L~L~~N~l~~~~p~-~~~l~~L 218 (218)
+++++|.++.+.+. |.++++|
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCC
T ss_pred EEeCCCccCccchhhhcCCcch
Confidence 99999999988775 7777654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.5e-10 Score=91.82 Aligned_cols=73 Identities=14% Similarity=-0.010 Sum_probs=55.5
Q ss_pred CCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCC-EEEccCCcCcccCCC-CCCCCCC
Q 045729 144 LSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPF-ILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 144 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
+++|+.+++++|.++..-+..|.++.+|+.+++.+| ++..-+..|.++.+|+ .+++.+ .++.+.+. |.++++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 678999999998888444556788889999999888 6644456788899998 999988 66665544 7666543
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=1.2e-12 Score=107.26 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=101.0
Q ss_pred CcEEEEEcCCCCCcccCCcCC----C-CCCCCCEEEccCCcccccCCccc-CCCCCCcEEEccCccccccCchhh-----
Q 045729 73 QRVTALNLSDIGLGGTIPPHL----G-NLTFLVSLDVAHNNFRGHLPNEL-GQLRRLRFIRFGFNKLSGSIPTWI----- 141 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~----- 141 (218)
+.++.+++++|.++......+ . ..++|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578999999999875433222 2 23689999999999974332222 245689999999999974433333
Q ss_pred cCCCCCCEEEccCCcccC----CCCccccCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCcc
Q 045729 142 GVLSKLQTLRLYNNSFTG----PIPNSLFNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 142 ~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 207 (218)
...++|++|++++|.++. .++..+...++|++|++++|.++.. ++..+...++|++|++++|.++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 246889999999999874 2444557789999999999998742 34566777899999999999874
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=6.5e-12 Score=108.35 Aligned_cols=136 Identities=12% Similarity=0.063 Sum_probs=86.8
Q ss_pred CcEEEEEcCCCCCcccCCcCCCC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCcEEEccCcc--ccccCchh
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGN-LTFLVSLDVA----HNNFRGH-----LPNELGQLRRLRFIRFGFNK--LSGSIPTW 140 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~p~~ 140 (218)
++++.|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|+++++. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 45555666555555444433433 6667777775 4555532 22224457778888876432 44443443
Q ss_pred hc-CCCCCCEEEccCCcccC-CCCccccCCCCCcEEecccCccccc-CCccCCCCCCCCEEEccCCcCccc
Q 045729 141 IG-VLSKLQTLRLYNNSFTG-PIPNSLFNLSKLEVFNAMYNVIDGN-IPSRIGNFSSPFILNLGYNNLQGL 208 (218)
Q Consensus 141 ~~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~ 208 (218)
+. .+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 43 47888999998888874 2344456788999999999987644 333445788999999999987754
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=3.4e-11 Score=103.90 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccc----ccCchhhcCCCCCCEEEccCCcccCCCCcc--
Q 045729 95 NLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLS----GSIPTWIGVLSKLQTLRLYNNSFTGPIPNS-- 164 (218)
Q Consensus 95 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-- 164 (218)
.+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ +|..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 445555555555555432 1112233455555555555554 1222333444555555555554442 2333
Q ss_pred -------------------------ccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcCc
Q 045729 165 -------------------------LFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 165 -------------------------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+..+++|+.++++++.. +.+|..+..+++|++|++++|.++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCC
Confidence 33334444444444322 244555556667777777777654
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.98 E-value=1.1e-11 Score=96.64 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCCCCcEEEccCccccc--cCchhhcCCCCCCEEEccCCcccCCCCccccCCC--CCcEEecccCcccccCCc-------
Q 045729 119 QLRRLRFIRFGFNKLSG--SIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS--KLEVFNAMYNVIDGNIPS------- 187 (218)
Q Consensus 119 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~------- 187 (218)
++++|+.|++++|++++ .+|..+..+++|+.|++++|.+++. ..+..+. +|+.|++++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777764 3345555667777777777777632 2233233 677777777777655552
Q ss_pred cCCCCCCCCEEE
Q 045729 188 RIGNFSSPFILN 199 (218)
Q Consensus 188 ~~~~l~~L~~L~ 199 (218)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.6e-10 Score=84.36 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCCCCCCCCEEEccCC-ccccc----CCcccCCCCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC--
Q 045729 92 HLGNLTFLVSLDVAHN-NFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP-- 160 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~-- 160 (218)
.+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566777777776 66421 233444556777777777776532 223344556777777777777632
Q ss_pred --CCccccCCCCCcEEec--ccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729 161 --IPNSLFNLSKLEVFNA--MYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 161 --~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445556677788888 67777632 2334445577888888887764
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.79 E-value=6.4e-11 Score=102.11 Aligned_cols=129 Identities=9% Similarity=0.118 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCCCcccCCcCCC-CCCCCCEEEccCC-ccccc-CCcccCCCCCCcEEEccCccccccCchhhc----CCC
Q 045729 73 QRVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVAHN-NFRGH-LPNELGQLRRLRFIRFGFNKLSGSIPTWIG----VLS 145 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~ 145 (218)
++++.|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4566777777666654444443 4667777777766 34321 223333566777777777766543333232 455
Q ss_pred CCCEEEccCCc--ccCC-CCccccCCCCCcEEecccC-cccccCCccCCCCCCCCEEEccC
Q 045729 146 KLQTLRLYNNS--FTGP-IPNSLFNLSKLEVFNAMYN-VIDGNIPSRIGNFSSPFILNLGY 202 (218)
Q Consensus 146 ~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~ 202 (218)
+|++|++++|. ++.. ++.-...+++|+.|++++| .+. .+|..+..+++|++|+++.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSB
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEccccc
Confidence 67777777665 1100 1111234567777777766 233 2455555566666666443
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.72 E-value=2.2e-10 Score=98.78 Aligned_cols=131 Identities=8% Similarity=0.043 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCcccCCcCCC-CCCCCCEEEcc--C----CcccccCC------cccCCCCCCcEEEccCccccccCchh
Q 045729 74 RVTALNLSDIGLGGTIPPHLG-NLTFLVSLDVA--H----NNFRGHLP------NELGQLRRLRFIRFGFNKLSGSIPTW 140 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~p------~~~~~l~~L~~L~l~~n~l~~~~p~~ 140 (218)
+++.|++..+.+++.....+. .+++|+.|+++ + +.++ ..| ..+..+++|+.|++++ .+++..+..
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 344444444444433222222 35666666666 2 3333 111 1134456677777755 444333334
Q ss_pred hcC-CCCCCEEEccCCcccCCCCccc-cCCCCCcEEecccCcccccCCc-cCCCCCCCCEEEccCCcCc
Q 045729 141 IGV-LSKLQTLRLYNNSFTGPIPNSL-FNLSKLEVFNAMYNVIDGNIPS-RIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 141 ~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~ 206 (218)
+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 443 6777777777777654333333 4567788888888877533332 3345677888888877763
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=7.9e-09 Score=84.21 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccC--CCCCCcEEEccC--cccccc-----Cchhh-
Q 045729 72 HQRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELG--QLRRLRFIRFGF--NKLSGS-----IPTWI- 141 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~- 141 (218)
.++++.|+++++.-. .+++ + .+++|+.|++..+.++......+. .+++|+.|+++. |...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 356777777665211 2232 2 266777777776665432222222 567777777642 111111 11112
Q ss_pred -cCCCCCCEEEccCCcccCCCCccc---cCCCCCcEEecccCccccc----CCccCCCCCCCCEEEccCCcCc
Q 045729 142 -GVLSKLQTLRLYNNSFTGPIPNSL---FNLSKLEVFNAMYNVIDGN----IPSRIGNFSSPFILNLGYNNLQ 206 (218)
Q Consensus 142 -~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 206 (218)
..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 235677777777776653222222 2356777777777777642 3333345677777777777655
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=8e-07 Score=73.37 Aligned_cols=56 Identities=7% Similarity=-0.005 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccC
Q 045729 73 QRVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGF 130 (218)
Q Consensus 73 ~~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 130 (218)
.+++.+++++|.++..-...|. ..+|+.+.+..+ ++..-...|.++++|+.+++..
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 3445555554444421112222 344444444322 3312223444555555555543
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=4.4e-08 Score=76.33 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=63.5
Q ss_pred CCCCCCEEEccCCcccc--cCCcccCCCCCCcEEEccCccccccCchhhcCCC--CCCEEEccCCcccCCCCc-------
Q 045729 95 NLTFLVSLDVAHNNFRG--HLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLS--KLQTLRLYNNSFTGPIPN------- 163 (218)
Q Consensus 95 ~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~------- 163 (218)
++++|+.|++++|.+++ .+|..+..+++|+.|++++|++++. ..+..+. +|++|++++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47899999999999996 4456667899999999999999843 3344444 899999999999876663
Q ss_pred cccCCCCCcEEe
Q 045729 164 SLFNLSKLEVFN 175 (218)
Q Consensus 164 ~l~~l~~L~~L~ 175 (218)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256789999886
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=6.9e-09 Score=76.64 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=85.7
Q ss_pred CCcEEEEEcCCC-CCccc----CCcCCCCCCCCCEEEccCCccccc----CCcccCCCCCCcEEEccCcccccc----Cc
Q 045729 72 HQRVTALNLSDI-GLGGT----IPPHLGNLTFLVSLDVAHNNFRGH----LPNELGQLRRLRFIRFGFNKLSGS----IP 138 (218)
Q Consensus 72 ~~~l~~l~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p 138 (218)
.+.+++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 478999999999 88642 344566678999999999999742 233445568899999999999743 34
Q ss_pred hhhcCCCCCCEEEc--cCCcccCC----CCccccCCCCCcEEecccCccc
Q 045729 139 TWIGVLSKLQTLRL--YNNSFTGP----IPNSLFNLSKLEVFNAMYNVID 182 (218)
Q Consensus 139 ~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 182 (218)
..+...++|++|++ ++|.++.. +...+...++|+.|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 56677789999999 88998743 3344556789999999999875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=8.9e-07 Score=73.08 Aligned_cols=115 Identities=10% Similarity=-0.058 Sum_probs=73.1
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccc-----ccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729 97 TFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS-----GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171 (218)
Q Consensus 97 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 171 (218)
.+|+.+.+. +.++..-...|.++++|+.+++.+|.+. ..-+..|..+++|+.+++.. .++..-...|.++.+|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 445555552 3344233456777778888887776553 12334677777888888774 3553344567777888
Q ss_pred cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCC
Q 045729 172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRL 215 (218)
Q Consensus 172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l 215 (218)
+.+++..| ++..-+.+|.++ +|+.+++.+|.+....+. |..+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 88888554 553445677788 888999888877665544 4444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=1.8e-07 Score=76.21 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCCc---------ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhc
Q 045729 72 HQRVTALNLSDIGLG---------GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIG 142 (218)
Q Consensus 72 ~~~l~~l~l~~~~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 142 (218)
.++++.|.+...... +.+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 367888888665331 123344567899999999987421 3443 3 378999999998887643333444
Q ss_pred --CCCCCCEEEccC--CcccCC-----CCccc--cCCCCCcEEecccCcccccCCccC---CCCCCCCEEEccCCcCcc
Q 045729 143 --VLSKLQTLRLYN--NSFTGP-----IPNSL--FNLSKLEVFNAMYNVIDGNIPSRI---GNFSSPFILNLGYNNLQG 207 (218)
Q Consensus 143 --~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~ 207 (218)
.+++|++|+++. |...+. +...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 789999999864 221111 11222 247899999999998874333222 357899999999999876
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.3e-06 Score=63.59 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCC
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHN 107 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 107 (218)
.++.||++++.++..--..+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555555544332233344444444444444
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=6.7e-07 Score=65.12 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=61.9
Q ss_pred cCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcc-ccccCchhhcCC----CCCCEEEccCCc-ccCCC
Q 045729 88 TIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNK-LSGSIPTWIGVL----SKLQTLRLYNNS-FTGPI 161 (218)
Q Consensus 88 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~ 161 (218)
.+|.....-..|+.|+++++.++..--..+.++++|+.|++++|. ++...-..+..+ ++|++|++++|. ++..-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345433333578999999988875444556788899999998885 553322344443 368888888874 66332
Q ss_pred CccccCCCCCcEEecccCc
Q 045729 162 PNSLFNLSKLEVFNAMYNV 180 (218)
Q Consensus 162 p~~l~~l~~L~~L~L~~N~ 180 (218)
-..+..+++|+.|+++++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 3345667888888888774
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.53 E-value=0.00072 Score=55.28 Aligned_cols=85 Identities=8% Similarity=-0.121 Sum_probs=56.6
Q ss_pred ccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCC
Q 045729 116 ELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSP 195 (218)
Q Consensus 116 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 195 (218)
.|..+.+|+.+.+..+ ++..-...|..+++|+.+++..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556777777777654 44223346777888888888654 44233456777888888888766 553344577888888
Q ss_pred CEEEccCC
Q 045729 196 FILNLGYN 203 (218)
Q Consensus 196 ~~L~L~~N 203 (218)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88888654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.00067 Score=55.48 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=66.3
Q ss_pred CcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCC
Q 045729 90 PPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLS 169 (218)
Q Consensus 90 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 169 (218)
...|.+...|+.+.+..+... .-...|.+++.|+.+.+.. .++..-...|..+.+|+.+++..+ ++..-..+|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345666677777777655443 3344566777777777753 344122345667777777777654 4323345566777
Q ss_pred CCcEEecccCcccccCCccCCCCCCCCEEEccCCc
Q 045729 170 KLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 170 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 204 (218)
+|+.+.+..+ ++..-..+|.++.+|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 7777777543 442223466777777777777654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.0015 Score=52.89 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=67.9
Q ss_pred cCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCC
Q 045729 91 PHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSK 170 (218)
Q Consensus 91 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 170 (218)
..+.....|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...|..+++|+.+.+.++.++..-...|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34555666777776554 33233345666777777777543 33122345677788888888777666334556777788
Q ss_pred CcEEecccCcccccCCccCCCCCCCCEEEccCC
Q 045729 171 LEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 171 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 203 (218)
|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888887654 44233456777777777776543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.47 E-value=0.0011 Score=54.25 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCCcccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEcc
Q 045729 74 RVTALNLSDIGLGGTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLY 153 (218)
Q Consensus 74 ~l~~l~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 153 (218)
.++.+.+..+... .-...+.+...|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|..+++|+.+.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 3444444433221 2334567788888888863 454233456888889999988764 442334578888899999886
Q ss_pred CCcccCCCCccccCCCCCcEEecccCcccccCCccCCCCCCCCEEEccCCcC
Q 045729 154 NNSFTGPIPNSLFNLSKLEVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNL 205 (218)
Q Consensus 154 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 205 (218)
.+ ++..-..+|.++.+|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 54 553335667888899999888876431 3556667788777766543
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00034 Score=48.21 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=39.3
Q ss_pred cEEEccCcccc-ccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCCcEEecccCccc
Q 045729 124 RFIRFGFNKLS-GSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKLEVFNAMYNVID 182 (218)
Q Consensus 124 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 182 (218)
..++.+++.++ ..+|..+. +++++|+|++|.++..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 35565332 46888888888888433445667788888888888764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=0.0034 Score=51.25 Aligned_cols=120 Identities=14% Similarity=0.045 Sum_probs=79.8
Q ss_pred CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729 92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 171 (218)
.+.....++.+.+..+... .....|..+..++.+....+.+. ...+..+.+|+.+.+..+ ++..-..+|.++.+|
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence 4555666777766665443 33445666777777766655432 235677888999988765 442335567889999
Q ss_pred cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 045729 172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRLL 218 (218)
Q Consensus 172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~L 218 (218)
+.+++..+ ++..-..+|.++.+|+.+.+..| ++.+... |.++++|
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 99999754 65334568889999999999877 5554443 6665543
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.30 E-value=0.0056 Score=49.53 Aligned_cols=122 Identities=12% Similarity=0.017 Sum_probs=84.6
Q ss_pred CCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCCcccCCCCccccCCCCC
Q 045729 92 HLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNNSFTGPIPNSLFNLSKL 171 (218)
Q Consensus 92 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 171 (218)
.+.....++.+.+..+ +.......|..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +...-...+.++.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4555677777777654 33234456778889999998765 44233456778889999998654 442334567789999
Q ss_pred cEEecccCcccccCCccCCCCCCCCEEEccCCcCcccCCC-CCCCCC
Q 045729 172 EVFNAMYNVIDGNIPSRIGNFSSPFILNLGYNNLQGLLTI-FGRLRL 217 (218)
Q Consensus 172 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~l~~ 217 (218)
+.+.+.++.++..-...|.++.+|+.+.+..+ ++.+... |.++++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 99999998887444568889999999999755 5444332 555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=8e-05 Score=55.12 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCCCcEEEccCcccccc----CchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCc---ccc----c
Q 045729 120 LRRLRFIRFGFNKLSGS----IPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNV---IDG----N 184 (218)
Q Consensus 120 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~---l~~----~ 184 (218)
-+.|+.|++++|.+... +.+.+..-+.|++|+++.|.|... +.+.+..-..|+.|++++|. +.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 34455555555555421 112223334566666666655421 22233344456666665432 221 1
Q ss_pred CCccCCCCCCCCEEEccCCc
Q 045729 185 IPSRIGNFSSPFILNLGYNN 204 (218)
Q Consensus 185 ~p~~~~~l~~L~~L~L~~N~ 204 (218)
+.+.+..-+.|+.|+++.|.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCCcCeEeccCCC
Confidence 22233334556666666553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.0013 Score=45.24 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=36.0
Q ss_pred EEEcCCCCCc-ccCCcCCCCCCCCCEEEccCCcccccCCcccCCCCCCcEEEccCcccc
Q 045729 77 ALNLSDIGLG-GTIPPHLGNLTFLVSLDVAHNNFRGHLPNELGQLRRLRFIRFGFNKLS 134 (218)
Q Consensus 77 ~l~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 134 (218)
.++.++++++ ..+|..+. .++++|+|++|+++..-+..|..+++|++|++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777765 34554432 45778888888887333344667777777777777654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.64 E-value=0.00095 Score=49.33 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=61.9
Q ss_pred CCCCCCcEEEccCc-cccc----cCchhhcCCCCCCEEEccCCcccCC----CCccccCCCCCcEEecccCccccc----
Q 045729 118 GQLRRLRFIRFGFN-KLSG----SIPTWIGVLSKLQTLRLYNNSFTGP----IPNSLFNLSKLEVFNAMYNVIDGN---- 184 (218)
Q Consensus 118 ~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~---- 184 (218)
..-+.|+.|++++| .+.. .+.+.+..-+.|+.|++++|.+... +.+.+..-..|+.|+|+.|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467888888875 6642 2334556678999999999999732 334455668999999999999743
Q ss_pred CCccCCCCCCCCEEEccCC
Q 045729 185 IPSRIGNFSSPFILNLGYN 203 (218)
Q Consensus 185 ~p~~~~~l~~L~~L~L~~N 203 (218)
+-+.+..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3345566678999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.17 E-value=32 Score=21.75 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.8
Q ss_pred CCCCCCCCEEEcc
Q 045729 93 LGNLTFLVSLDVA 105 (218)
Q Consensus 93 l~~l~~L~~L~l~ 105 (218)
|.++..|+.+.+-
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.47 E-value=47 Score=20.92 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=27.8
Q ss_pred CcccCCCCCCcEEEccCccccccCchhhcCCCCCCEEEccCC
Q 045729 114 PNELGQLRRLRFIRFGFNKLSGSIPTWIGVLSKLQTLRLYNN 155 (218)
Q Consensus 114 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 155 (218)
...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+...
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 346778888888888665 33133456778888888887654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=24.45 E-value=25 Score=15.21 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=6.9
Q ss_pred CCCCccceee
Q 045729 58 YPICTWIGIS 67 (218)
Q Consensus 58 ~~~c~w~gv~ 67 (218)
+..|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3568898753
Done!