BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045731
         (444 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
           Wolinella Succinogenes
 pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
 pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
           Wolinella Succinogenes
          Length = 239

 Score = 37.4 bits (85), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 191 FLVSGRPSLDFRRQSNSKWGSMFRILP--ESQNMTMLSVDSQSWSNDLAIPYPTYFHPSK 248
            +++GRPSL  R  +      +  +LP    + +  LSVD+ +W N ++    ++ H  K
Sbjct: 67  MMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQK 126

Query: 249 QTEVSEWQERM 259
           + ++S+ +ER+
Sbjct: 127 EHDISKLEERI 137


>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
 pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
          Length = 241

 Score = 37.0 bits (84), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 191 FLVSGRPSLDFRRQSNSKWGSMFRILP--ESQNMTMLSVDSQSWSNDLAIPYPTYFHPSK 248
            +++GRPSL  R  +      +  +LP    + +  LSVD+ +W N ++    ++ H  K
Sbjct: 67  MMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQK 126

Query: 249 QTEVSEWQERM 259
           + ++S+ +ER+
Sbjct: 127 EHDISKLEERI 137


>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
           Venom
 pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
           Venom
          Length = 497

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 43  VNSKQVNACLGRYIYIHDLPKQFNEDVLENCQLITRKIDKYDTCMYTLNSG-FGPRIENS 101
           V   +V    G+ +Y   L K   E    NC  +  K D Y T  Y L  G   P   + 
Sbjct: 157 VKPSEVGKSAGQ-LYEESLQKAVEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPGAVDM 215

Query: 102 NGILSNSTSWFITDHFFLEVIFHNRMKNYE 131
            G L N  S +     F+E + H+ +  YE
Sbjct: 216 IGDLLNEDSGYYVS--FIESLKHDDIFAYE 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,863,508
Number of Sequences: 62578
Number of extensions: 593059
Number of successful extensions: 1250
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 8
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)