BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045732
         (697 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 105/297 (35%), Gaps = 79/297 (26%)

Query: 254 NLIYVSREKSKSCPSHFKAGALNAMLRVSATMTNAPIILTLDCDTSSNDPQTPLRVLCYV 313
            ++Y +RE+++    H KAG ++A L          +++  D D   +       V  +V
Sbjct: 213 GVVYSTRERNE----HAKAGNMSAALE----RLKGELVVVFDADHVPSRDFLARTVGYFV 264

Query: 314 SNPVTRSNLSFVQFPQRF-------RGLSSNDIYAAEFRRLFFVNLLGFDGLKGATYVGT 366
            +P    +L  VQ P  F       R L+  D    E    +     G D   GA + G+
Sbjct: 265 EDP----DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGS 320

Query: 367 GTFFCRRALFGSPSNLISPEIPELHPNYAVDEPIQSPSILSLAHHVASCNYENRTNWGSK 426
                RRAL                     DE                            
Sbjct: 321 AAVLRRRAL---------------------DE---------------------------A 332

Query: 427 MGFRYGSLTEDYYTGYRLHCEGWRSIYCTPDRPAFYGDAPITLFDFINQYKRWAIGGLQM 486
            GF   ++TED  T   +H  GW+S+Y   DR    G  P T   FI Q  RWA G +QM
Sbjct: 333 GGFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQM 390

Query: 487 AFARYSPFTVGTKTIGLMGLAYG--HYAIWPIWCIP--TLVYALIPQLALLKGVSIF 539
              +   F  G      +G+A    +      W  P   +++ + P + L  G+ IF
Sbjct: 391 LLLKNPLFRRG------LGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIF 441


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,281,902
Number of Sequences: 62578
Number of extensions: 919887
Number of successful extensions: 2140
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2136
Number of HSP's gapped (non-prelim): 4
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)