BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045735
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NX2|A Chain A, Crystal Structure Of Protein Ypsa From Bacillus Subtilis,
Pfam Duf1273
Length = 181
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 307 NPLGLWKNGEIFLESSDGQLLLYDPNAQ 334
+PL + + F++ SDG LLLYDP +
Sbjct: 116 SPLQFKQKNQFFIDKSDGLLLLYDPEKE 143
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 76 NLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCL-MNGNKYISLWNLATQE 134
N++M+ TF + ++ R ++ GF+ Y G+FC+ +N + + ++ +
Sbjct: 85 NMDMANLTFLNEASILHNLRSRYES------GFIYTYSGLFCIAINPYRRLPIYTQGLVD 138
Query: 135 LRRLPKCRASLPPH 148
R K RA +PPH
Sbjct: 139 KYR-GKRRAEMPPH 151
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 197 DSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV 247
D W FR F+ YV ID ++WN +R+E + ++ F + + V
Sbjct: 202 DEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGV 252
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 197 DSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV 247
D W FR F+ YV ID ++WN +R+E + ++ F + + V
Sbjct: 203 DEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGV 253
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 197 DSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV 247
D W FR F+ YV ID ++WN +R+E + ++ F + + V
Sbjct: 202 DEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGV 252
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDF 182
K +SL N +Q L+ + H T+H S + F L+I ++ V L L DT +
Sbjct: 156 KALSLRNYQSQSLKSIRDIH-----HLTLHLSESAFLLEIFADILSSVRYLELRDTNLA- 209
Query: 183 YYDFSHIAVYNLSTDSWR-GFRG 204
+ FS + V +S+ + FRG
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRG 232
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDF 182
K +SL N +Q L+ + H T+H S + F L+I ++ V L L DT +
Sbjct: 182 KALSLRNYQSQSLKSIRDIH-----HLTLHLSESAFLLEIFADILSSVRYLELRDTNLA- 235
Query: 183 YYDFSHIAVYNLSTDSWR-GFRG 204
+ FS + V +S+ + FRG
Sbjct: 236 RFQFSPLPVDEVSSPMKKLAFRG 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,175,678
Number of Sequences: 62578
Number of extensions: 530715
Number of successful extensions: 1037
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 8
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)