Query 045735
Match_columns 378
No_of_seqs 140 out of 1635
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.9E-34 6.2E-39 254.8 26.2 214 109-334 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 6.4E-15 1.4E-19 123.3 16.5 136 218-354 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 1.9E-14 4.1E-19 115.5 14.3 103 218-320 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.4 7.6E-11 1.6E-15 109.0 22.7 317 9-356 2-373 (373)
5 PF12937 F-box-like: F-box-lik 98.9 4.1E-10 8.9E-15 73.0 2.1 43 11-53 1-43 (47)
6 PHA02713 hypothetical protein; 98.9 2.1E-07 4.5E-12 93.0 19.6 211 108-344 298-545 (557)
7 PF00646 F-box: F-box domain; 98.8 1.7E-09 3.7E-14 70.5 1.1 45 11-55 3-47 (48)
8 smart00256 FBOX A Receptor for 98.7 5.6E-09 1.2E-13 65.5 1.4 39 14-52 1-39 (41)
9 PHA02790 Kelch-like protein; P 98.7 2.6E-06 5.7E-11 83.7 20.7 195 112-339 270-477 (480)
10 PHA03098 kelch-like protein; P 98.7 3.9E-06 8.5E-11 83.9 21.4 193 123-341 312-520 (534)
11 KOG4441 Proteins containing BT 98.6 4E-06 8.6E-11 83.7 19.6 207 108-341 327-555 (571)
12 PLN02153 epithiospecifier prot 98.6 2.6E-05 5.7E-10 73.3 23.6 203 123-341 51-293 (341)
13 PHA02713 hypothetical protein; 98.6 5.5E-06 1.2E-10 82.8 19.9 194 123-341 273-498 (557)
14 PLN02193 nitrile-specifier pro 98.5 2.3E-05 4.9E-10 76.9 21.6 238 123-377 194-467 (470)
15 TIGR03548 mutarot_permut cycli 98.4 3.5E-05 7.6E-10 71.9 20.1 151 186-341 87-288 (323)
16 KOG4441 Proteins containing BT 98.4 1.7E-05 3.6E-10 79.3 18.2 193 123-340 302-507 (571)
17 TIGR03547 muta_rot_YjhT mutatr 98.3 0.00033 7.2E-09 66.0 22.9 217 109-341 13-307 (346)
18 PRK14131 N-acetylneuraminic ac 98.1 0.00052 1.1E-08 65.5 20.8 217 109-341 34-329 (376)
19 PLN02193 nitrile-specifier pro 98.1 0.00085 1.8E-08 65.9 21.4 151 187-341 193-360 (470)
20 PHA03098 kelch-like protein; P 98.0 0.0004 8.6E-09 69.5 18.7 191 126-341 267-473 (534)
21 PLN02153 epithiospecifier prot 98.0 0.00099 2.2E-08 62.6 20.1 151 187-341 50-234 (341)
22 PHA02790 Kelch-like protein; P 97.8 0.0007 1.5E-08 66.7 16.3 137 108-276 313-454 (480)
23 PRK14131 N-acetylneuraminic ac 97.8 0.01 2.2E-07 56.6 22.5 145 187-337 189-373 (376)
24 KOG2120 SCF ubiquitin ligase, 97.7 9.8E-06 2.1E-10 71.9 1.3 41 10-50 97-137 (419)
25 TIGR03548 mutarot_permut cycli 97.7 0.0041 8.9E-08 58.0 18.4 132 123-275 89-230 (323)
26 TIGR03547 muta_rot_YjhT mutatr 97.6 0.033 7.2E-07 52.4 22.3 130 187-322 168-329 (346)
27 KOG4693 Uncharacterized conser 97.3 0.0037 8.1E-08 54.7 11.5 214 123-345 45-289 (392)
28 KOG1230 Protein containing rep 96.9 0.033 7.3E-07 51.8 14.2 155 186-343 153-351 (521)
29 KOG0281 Beta-TrCP (transducin 96.1 0.0026 5.6E-08 57.5 1.5 43 11-53 75-121 (499)
30 KOG2997 F-box protein FBX9 [Ge 96.1 0.0027 5.8E-08 56.9 1.4 45 11-55 107-156 (366)
31 KOG4693 Uncharacterized conser 96.1 0.13 2.8E-06 45.4 11.5 134 186-321 156-309 (392)
32 KOG0379 Kelch repeat-containin 95.7 0.45 9.6E-06 47.0 15.2 151 188-342 89-259 (482)
33 KOG0379 Kelch repeat-containin 94.6 1.1 2.4E-05 44.2 14.5 204 124-343 90-312 (482)
34 PF02191 OLF: Olfactomedin-lik 94.4 2.2 4.7E-05 38.1 14.5 126 208-341 64-212 (250)
35 smart00284 OLF Olfactomedin-li 93.4 3.4 7.3E-05 36.9 13.6 125 209-341 70-217 (255)
36 COG4257 Vgb Streptogramin lyas 93.1 1.1 2.4E-05 39.9 9.9 124 108-258 194-319 (353)
37 KOG0274 Cdc4 and related F-box 93.1 11 0.00023 37.9 18.9 43 11-53 108-150 (537)
38 PF13360 PQQ_2: PQQ-like domai 92.9 5.9 0.00013 34.5 15.6 188 112-339 35-237 (238)
39 KOG1230 Protein containing rep 92.2 2.4 5.2E-05 40.0 11.3 152 188-341 99-289 (521)
40 TIGR01640 F_box_assoc_1 F-box 92.2 4.9 0.00011 35.2 13.3 116 220-341 3-136 (230)
41 PF13964 Kelch_6: Kelch motif 92.2 0.38 8.2E-06 30.9 4.6 36 217-252 6-44 (50)
42 COG4257 Vgb Streptogramin lyas 90.5 13 0.00028 33.5 14.5 219 109-341 68-314 (353)
43 PF02897 Peptidase_S9_N: Proly 89.7 12 0.00026 36.0 14.5 118 220-340 285-412 (414)
44 PF13964 Kelch_6: Kelch motif 88.8 0.84 1.8E-05 29.3 4.0 20 123-143 29-48 (50)
45 PF01344 Kelch_1: Kelch motif; 88.1 1.7 3.6E-05 27.3 5.0 36 217-252 6-44 (47)
46 PF07762 DUF1618: Protein of u 87.4 4.5 9.7E-05 32.0 8.2 65 237-301 7-98 (131)
47 KOG0310 Conserved WD40 repeat- 86.7 26 0.00057 33.8 13.7 153 186-354 47-207 (487)
48 PF10282 Lactonase: Lactonase, 86.3 29 0.00064 32.5 17.7 170 153-341 144-333 (345)
49 KOG4341 F-box protein containi 86.1 0.29 6.3E-06 46.1 0.7 39 11-49 72-110 (483)
50 PF10282 Lactonase: Lactonase, 85.8 27 0.0006 32.7 14.0 116 222-341 154-286 (345)
51 PF13360 PQQ_2: PQQ-like domai 83.3 29 0.00064 30.0 14.6 135 188-339 4-147 (238)
52 PF07646 Kelch_2: Kelch motif; 81.2 5 0.00011 25.5 4.9 37 217-253 6-47 (49)
53 PF08450 SGL: SMP-30/Gluconola 81.0 38 0.00083 29.7 19.9 197 110-342 8-223 (246)
54 COG3055 Uncharacterized protei 80.7 50 0.0011 30.9 12.8 172 186-363 112-360 (381)
55 PF07893 DUF1668: Protein of u 80.7 46 0.00099 31.3 13.1 127 113-256 76-222 (342)
56 PRK11138 outer membrane biogen 77.0 64 0.0014 30.8 13.2 107 217-338 64-184 (394)
57 COG1520 FOG: WD40-like repeat 76.8 47 0.001 31.4 12.1 139 186-339 34-178 (370)
58 smart00612 Kelch Kelch domain. 76.7 3.1 6.8E-05 25.6 2.8 19 186-204 14-32 (47)
59 KOG0294 WD40 repeat-containing 74.8 48 0.001 30.4 10.5 110 217-336 47-161 (362)
60 smart00564 PQQ beta-propeller 74.8 11 0.00024 21.3 4.7 25 314-338 6-30 (33)
61 KOG2055 WD40 repeat protein [G 74.7 85 0.0018 30.4 13.0 114 218-339 264-381 (514)
62 PF13418 Kelch_4: Galactose ox 74.1 3.9 8.4E-05 25.9 2.8 19 123-142 30-48 (49)
63 KOG3545 Olfactomedin and relat 73.1 65 0.0014 28.5 10.8 126 208-341 63-211 (249)
64 PF13418 Kelch_4: Galactose ox 73.1 8.8 0.00019 24.2 4.3 35 217-251 6-44 (49)
65 cd01207 Ena-Vasp Enabled-VASP- 72.8 11 0.00025 28.9 5.4 42 123-173 10-51 (111)
66 PF05096 Glu_cyclase_2: Glutam 72.8 72 0.0016 28.7 13.6 139 184-339 65-210 (264)
67 PF01011 PQQ: PQQ enzyme repea 72.4 7.8 0.00017 23.1 3.7 27 315-341 1-27 (38)
68 PF01344 Kelch_1: Kelch motif; 72.1 3.4 7.3E-05 25.8 2.1 33 109-142 7-47 (47)
69 PF07893 DUF1668: Protein of u 71.0 93 0.002 29.2 12.5 84 188-276 200-296 (342)
70 PF07250 Glyoxal_oxid_N: Glyox 71.0 76 0.0016 28.2 11.3 166 186-360 45-226 (243)
71 COG3386 Gluconolactonase [Carb 70.9 88 0.0019 28.9 11.9 108 222-339 36-158 (307)
72 PLN02772 guanylate kinase 70.0 26 0.00057 33.4 8.3 73 217-290 29-107 (398)
73 PF06433 Me-amine-dh_H: Methyl 67.6 76 0.0016 29.7 10.5 117 217-338 188-326 (342)
74 TIGR03074 PQQ_membr_DH membran 64.7 1.4E+02 0.0031 31.4 13.1 30 217-250 189-220 (764)
75 PF08450 SGL: SMP-30/Gluconola 64.0 1E+02 0.0022 27.0 16.5 106 222-340 11-130 (246)
76 TIGR02658 TTQ_MADH_Hv methylam 62.2 1.4E+02 0.0031 28.1 12.8 116 219-339 202-338 (352)
77 PTZ00420 coronin; Provisional 59.9 2E+02 0.0044 29.1 14.8 115 222-340 178-301 (568)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.4 2E+02 0.0043 28.9 13.3 111 217-339 64-196 (527)
79 TIGR03300 assembly_YfgL outer 58.7 1.6E+02 0.0035 27.7 14.2 104 217-337 60-168 (377)
80 cd01206 Homer Homer type EVH1 58.3 21 0.00046 27.1 4.3 39 123-173 12-51 (111)
81 KOG2502 Tub family proteins [G 56.9 6.9 0.00015 36.1 1.8 39 9-47 43-89 (355)
82 PF13570 PQQ_3: PQQ-like domai 56.5 17 0.00037 21.8 3.1 25 217-245 16-40 (40)
83 TIGR03300 assembly_YfgL outer 55.4 1.8E+02 0.004 27.3 13.9 105 217-338 236-344 (377)
84 PF13415 Kelch_3: Galactose ox 49.1 19 0.0004 22.7 2.5 20 123-143 20-39 (49)
85 KOG3926 F-box proteins [Amino 49.1 15 0.00033 32.8 2.6 40 10-49 201-241 (332)
86 KOG0292 Vesicle coat complex C 45.3 1.7E+02 0.0038 31.0 9.6 71 264-335 211-283 (1202)
87 KOG0289 mRNA splicing factor [ 44.2 3.1E+02 0.0066 26.6 11.3 124 184-321 366-494 (506)
88 PF12456 hSac2: Inositol phosp 43.7 1.4E+02 0.0029 23.1 7.0 79 279-373 28-112 (115)
89 KOG0293 WD40 repeat-containing 42.9 84 0.0018 30.0 6.5 83 267-353 405-492 (519)
90 COG2706 3-carboxymuconate cycl 42.2 2.9E+02 0.0064 25.8 12.8 143 224-366 53-213 (346)
91 PRK11028 6-phosphogluconolacto 42.0 2.8E+02 0.006 25.4 12.0 93 237-333 13-111 (330)
92 KOG1963 WD40 repeat protein [G 41.6 2.2E+02 0.0048 29.7 9.7 98 237-337 433-544 (792)
93 KOG0289 mRNA splicing factor [ 40.0 3.6E+02 0.0078 26.1 11.2 116 218-341 354-471 (506)
94 KOG0295 WD40 repeat-containing 39.9 2E+02 0.0043 27.1 8.3 65 269-337 304-369 (406)
95 PRK11138 outer membrane biogen 39.1 3.4E+02 0.0075 25.7 14.8 26 217-246 251-276 (394)
96 PF13013 F-box-like_2: F-box-l 38.6 15 0.00033 28.1 0.9 29 11-39 22-50 (109)
97 KOG0649 WD40 repeat protein [G 38.3 2.4E+02 0.0051 25.2 8.1 59 281-340 81-152 (325)
98 COG3823 Glutamine cyclotransfe 37.8 1.2E+02 0.0027 26.3 6.2 87 254-344 41-132 (262)
99 PF08268 FBA_3: F-box associat 37.3 1.5E+02 0.0032 23.1 6.5 50 312-361 3-63 (129)
100 KOG0279 G protein beta subunit 35.7 1.5E+02 0.0033 26.8 6.7 93 237-336 173-266 (315)
101 COG4946 Uncharacterized protei 35.5 4.5E+02 0.0097 25.9 11.5 144 187-341 287-440 (668)
102 PF15525 DUF4652: Domain of un 34.6 2.5E+02 0.0055 23.8 7.4 60 281-341 86-157 (200)
103 KOG0315 G-protein beta subunit 32.4 3.7E+02 0.0081 24.1 12.0 93 237-334 147-247 (311)
104 KOG4547 WD40 repeat-containing 30.9 5.6E+02 0.012 25.7 14.1 113 237-354 81-195 (541)
105 PF00400 WD40: WD domain, G-be 29.1 1.2E+02 0.0026 17.3 5.8 38 293-330 1-39 (39)
106 PLN00181 protein SPA1-RELATED; 27.9 7.5E+02 0.016 26.2 21.3 96 237-335 641-741 (793)
107 KOG0649 WD40 repeat protein [G 27.9 4.4E+02 0.0096 23.6 12.0 95 237-338 137-241 (325)
108 KOG0291 WD40-repeat-containing 27.8 6.6E+02 0.014 26.4 10.3 111 217-333 250-381 (893)
109 PF09372 PRANC: PRANC domain; 27.7 31 0.00068 25.6 1.0 25 9-33 70-94 (97)
110 KOG0266 WD40 repeat-containing 27.4 5.9E+02 0.013 24.8 11.7 94 237-336 226-322 (456)
111 KOG2096 WD40 repeat protein [G 27.0 5.2E+02 0.011 24.1 11.1 113 221-341 96-226 (420)
112 KOG4152 Host cell transcriptio 26.9 6.5E+02 0.014 25.2 14.8 157 123-297 58-246 (830)
113 KOG2048 WD40 repeat protein [G 26.2 5.4E+02 0.012 26.4 9.3 110 219-338 436-554 (691)
114 TIGR03866 PQQ_ABC_repeats PQQ- 25.5 4.6E+02 0.0099 22.9 14.0 114 222-341 167-289 (300)
115 PF15408 PH_7: Pleckstrin homo 25.3 26 0.00055 25.3 0.2 23 29-51 77-99 (104)
116 KOG2106 Uncharacterized conser 25.0 3.8E+02 0.0082 26.6 7.8 59 278-342 387-446 (626)
117 cd00200 WD40 WD40 domain, foun 24.1 4.4E+02 0.0095 22.2 12.6 56 279-336 71-127 (289)
118 PF00930 DPPIV_N: Dipeptidyl p 24.1 5.9E+02 0.013 23.7 9.9 102 237-339 159-275 (353)
119 KOG0303 Actin-binding protein 24.0 6.5E+02 0.014 24.2 11.2 118 218-339 180-303 (472)
120 PF02191 OLF: Olfactomedin-lik 23.5 4.4E+02 0.0095 23.5 7.7 40 217-256 175-215 (250)
121 KOG2106 Uncharacterized conser 22.8 3.9E+02 0.0085 26.5 7.4 89 278-373 177-273 (626)
122 KOG0321 WD40 repeat-containing 22.7 4.4E+02 0.0096 26.9 8.0 53 237-290 75-131 (720)
123 PF12217 End_beta_propel: Cata 22.5 5.8E+02 0.013 23.1 8.0 60 217-276 195-257 (367)
124 KOG0647 mRNA export protein (c 22.5 6.2E+02 0.013 23.4 8.8 70 279-352 48-122 (347)
125 cd00216 PQQ_DH Dehydrogenases 22.3 7.6E+02 0.017 24.3 12.5 30 217-250 56-87 (488)
126 PF03088 Str_synth: Strictosid 22.2 92 0.002 22.8 2.6 18 323-340 36-53 (89)
127 COG3055 Uncharacterized protei 22.1 6.8E+02 0.015 23.7 8.7 93 208-303 32-135 (381)
128 KOG2321 WD40 repeat protein [G 21.4 5.5E+02 0.012 26.0 8.2 108 109-242 183-292 (703)
129 cd00260 Sialidase Sialidases o 21.3 6.5E+02 0.014 23.2 12.4 84 217-300 150-242 (351)
130 KOG0266 WD40 repeat-containing 21.2 7.8E+02 0.017 24.0 14.1 115 219-339 167-283 (456)
131 KOG0291 WD40-repeat-containing 21.1 9.8E+02 0.021 25.2 12.2 70 268-340 403-474 (893)
132 cd00837 EVH1 EVH1 (Enabled, Va 21.1 2.4E+02 0.0053 21.1 4.9 39 123-173 10-48 (104)
133 PF00958 GMP_synt_C: GMP synth 20.2 40 0.00087 25.0 0.3 23 5-27 48-70 (93)
134 KOG0300 WD40 repeat-containing 20.1 4.5E+02 0.0097 24.4 6.9 62 278-341 375-437 (481)
135 PF09574 DUF2374: Protein of 20.1 11 0.00023 22.9 -2.2 8 370-377 7-14 (42)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.9e-34 Score=254.75 Aligned_cols=214 Identities=26% Similarity=0.417 Sum_probs=162.5
Q ss_pred eecccceEEEEeCCceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCccccee
Q 045735 109 VGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSH 188 (378)
Q Consensus 109 ~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 188 (378)
++|||||||+.....+ +||||+||+++.||+++.... .......+||||+.+++||||++...... .....
T Consensus 1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSE 71 (230)
T ss_pred CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence 4799999999887777 999999999999997654211 11122689999999999999999653211 13578
Q ss_pred EEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceee-eeCCCCCCCC--Cccc
Q 045735 189 IAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQ-EIESPCTPEL--THGP 263 (378)
Q Consensus 189 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~-~i~~P~~~~~--~~~~ 263 (378)
++||++++++||.++..+ +.......+|++||++||+....... ..|++||+++|+|+ .+++|..... ....
T Consensus 72 ~~Vys~~~~~Wr~~~~~~---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSP---PHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEEEeCCCCccccccCC---CCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 999999999999998422 21111225999999999999765422 37999999999999 5999976532 1367
Q ss_pred EEEECCeEEEEEecCCCCEEEEEEEcC---CeeEEEEEEcC--CCcc---eeceEEEECCeEEEEeeC--CE-EEEEeCC
Q 045735 264 LGLYDNSLSLIALDEIKKCYQLWVLKE---RCWIKQFTIGP--FIEA---YNPLGLWKNGEIFLESSD--GQ-LLLYDPN 332 (378)
Q Consensus 264 l~~~~g~L~~~~~~~~~~~~~IW~L~~---~~W~~~~~i~~--~~~~---~~~~~~~~~g~ill~~~~--~~-~~~yd~~ 332 (378)
|++++|+||++........++||+|++ .+|+++++|+. ...+ ..|+++..+|+|++.... +. +++||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 999999999987643345699999997 67999999983 2222 347888889999998653 34 9999998
Q ss_pred CC
Q 045735 333 AQ 334 (378)
Q Consensus 333 t~ 334 (378)
|+
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=6.4e-15 Score=123.32 Aligned_cols=136 Identities=18% Similarity=0.336 Sum_probs=99.0
Q ss_pred ceEECceEEEEeeecCCc--cEEEEEECCCcee-eeeCCCCCCCC--CcccEEE-ECCeEEEEEecCCCCEEEEEEEcC-
Q 045735 218 STYWNGVCYWLAREEGEN--HVIISFDLSDEVI-QEIESPCTPEL--THGPLGL-YDNSLSLIALDEIKKCYQLWVLKE- 290 (378)
Q Consensus 218 ~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~-~~i~~P~~~~~--~~~~l~~-~~g~L~~~~~~~~~~~~~IW~L~~- 290 (378)
+|++||++||++.....+ ..|++||+++|+| +.+++|..... ....|.+ .+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999887643 2799999999999 88999988762 2266644 478999986544566799999995
Q ss_pred ----CeeEEEEEEcCCCc--ce-----eceEEEECCeEEEEee--C-----CEEEEEeCCCCeEEEEEEece-e--EEEE
Q 045735 291 ----RCWIKQFTIGPFIE--AY-----NPLGLWKNGEIFLESS--D-----GQLLLYDPNAQEMRDLGLRGL-W--FYVH 349 (378)
Q Consensus 291 ----~~W~~~~~i~~~~~--~~-----~~~~~~~~g~ill~~~--~-----~~~~~yd~~t~~~~~v~~~~~-~--~~~~ 349 (378)
.+|++.++|+.... .. ..+.+.+++++++..+ . ..+++|+ +++..+++..... . +.++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 68999999984321 11 2233445567776522 1 4588888 7788888876321 2 7788
Q ss_pred Eeeec
Q 045735 350 CFRES 354 (378)
Q Consensus 350 ~y~~s 354 (378)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 99997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=1.9e-14 Score=115.51 Aligned_cols=103 Identities=29% Similarity=0.525 Sum_probs=79.3
Q ss_pred ceEECceEEEEeeecCCc-cEEEEEECCCceeeeeCCC--CCCCCCcccEEEECCeEEEEEecCC--CCEEEEEEEcC--
Q 045735 218 STYWNGVCYWLAREEGEN-HVIISFDLSDEVIQEIESP--CTPELTHGPLGLYDNSLSLIALDEI--KKCYQLWVLKE-- 290 (378)
Q Consensus 218 ~v~~~G~lywl~~~~~~~-~~il~fD~~~e~~~~i~~P--~~~~~~~~~l~~~~g~L~~~~~~~~--~~~~~IW~L~~-- 290 (378)
++++||++||++...... ..|++||+++|+|+.|++| .........|.+++|+||++..... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 589999999999883322 6999999999999999999 2222234789999999999765322 35799999998
Q ss_pred -CeeEEEEEEcCCC-------cceeceEEEECCeEEEE
Q 045735 291 -RCWIKQFTIGPFI-------EAYNPLGLWKNGEIFLE 320 (378)
Q Consensus 291 -~~W~~~~~i~~~~-------~~~~~~~~~~~g~ill~ 320 (378)
++|++++.+-|.. ....++++.++|+|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987755432 23466777778888776
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.41 E-value=7.6e-11 Score=108.97 Aligned_cols=317 Identities=12% Similarity=0.090 Sum_probs=155.9
Q ss_pred ccCCCCcHHHHHHHHhcCCc-cccchhhccccchhhhhCCHHHHHHhhhccCCCcEEEEEeecCccCccccceeEEEccC
Q 045735 9 ESNADLPADAIIEMLLRLPV-KSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLD 87 (378)
Q Consensus 9 ~~~~~LP~Dll~eIL~rLP~-~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (378)
..|++||+|||..|..|||. .+++|||+|||+||+.+.... +..... ..+.+++..-.. . .... +.++.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~~-~~~~~~~~~~~~-~--~~~~---~~~~~ 71 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPFR-TRPLILFNPINP-S--ETLT---DDRSY 71 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCcc-cccccccCcccC-C--CCcc---ccccc
Confidence 45999999999999999977 799999999999999986421 000000 111111111000 0 0000 00000
Q ss_pred CccccCCCCCCCCCCCCCc--ceeecccceEEEEeC----CceEEEEeccccceecCCCCcCCCCCCccc--ccceeEE-
Q 045735 88 EKLIDLSTKRLDNPPIMPV--GFVGPYEGIFCLMNG----NKYISLWNLATQELRRLPKCRASLPPHTTI--HNSSAGF- 158 (378)
Q Consensus 88 ~~~~~~~~p~~~~~~~~~~--~~~~s~~GLll~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~--~~~~~~~- 158 (378)
...+. .++.. ..+.. ...++..|.|.-... +++ .+.||+++....+|+...+... +.. ....+.+
T Consensus 72 ~~~~~---~~ls~-~~~~r~~~~~~~~~~WLik~~~~~~~~~~-~Ll~PLsr~~~~~~~~~lnll~-f~v~ei~~~y~l~ 145 (373)
T PLN03215 72 ISRPG---AFLSR-AAFFRVTLSSSPSKGWLIKSDMDVNSGRF-HLLNPLSRLPLRHSSESVDLLE-FTVSEIREAYQVL 145 (373)
T ss_pred ccccc---ceeee-eEEEEeecCCCCCCCcEEEEeccccCCcc-EecCccccCccCCCCccceeee-eEEEEccceEEEE
Confidence 00000 00000 00000 012456777766542 477 9999999998887753332110 000 0000111
Q ss_pred eecCCC---CCEEEEEEEEEeecCcCCcccceeEEEEEc------CCCCcccccCCCCCCCccccCCCceEECceEEEEe
Q 045735 159 GLDIVS---NDYKLVLILTLLDTKIDFYYDFSHIAVYNL------STDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLA 229 (378)
Q Consensus 159 ~~d~~~---~~ykvv~~~~~~~~~~~~~~~~~~~~vyss------~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~ 229 (378)
+.+... -.|+-+.+......+ ......+.|+.. ..++|..++.. . ......|+.+|.+|-+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~----~--~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGD---NHRDGVLGIGRDGKINYWDGNVLKALKQM----G--YHFSDIIVHKGQTYALD 216 (373)
T ss_pred ecccccccccceeEEEEEEeecCC---CcceEEEEEeecCcEeeecCCeeeEccCC----C--ceeeEEEEECCEEEEEc
Confidence 000000 012111111111000 000112222211 14678777521 1 11237899999999986
Q ss_pred eecCCccEEEEEECCCceeeeeCCC----C--CCCCCcccEEEECCeEEEEEec--C-------------CCCEEEEEEE
Q 045735 230 REEGENHVIISFDLSDEVIQEIESP----C--TPELTHGPLGLYDNSLSLIALD--E-------------IKKCYQLWVL 288 (378)
Q Consensus 230 ~~~~~~~~il~fD~~~e~~~~i~~P----~--~~~~~~~~l~~~~g~L~~~~~~--~-------------~~~~~~IW~L 288 (378)
..+ .+.++|.+-+ .+.+..+ . ........|++..|.|.++... . ....++|+.+
T Consensus 217 ~~G----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 217 SIG----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred CCC----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 544 5777774322 2222111 1 1111226799999999986431 0 1357999999
Q ss_pred cC--CeeEEEEEEcCCCcce---eceEEE-------ECCeEEEEeeCCEEEEEeCCCCeEEEEEEe-c-ee-EEEEEeee
Q 045735 289 KE--RCWIKQFTIGPFIEAY---NPLGLW-------KNGEIFLESSDGQLLLYDPNAQEMRDLGLR-G-LW-FYVHCFRE 353 (378)
Q Consensus 289 ~~--~~W~~~~~i~~~~~~~---~~~~~~-------~~g~ill~~~~~~~~~yd~~t~~~~~v~~~-~-~~-~~~~~y~~ 353 (378)
+. .+|+++.+++-...+. ..+++. +.+.|++.. +....+||++.++...+... . .. -.+..|+|
T Consensus 292 D~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-d~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 370 (373)
T PLN03215 292 DDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-DTMPKVFKLDNGNGSSIETTISESSQSSFEMFVP 370 (373)
T ss_pred cCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-CCcceEEECCCCCccceEeecCccccchheeecc
Confidence 87 8999998876321111 111111 245566665 45688999999997666432 1 11 23445666
Q ss_pred ccc
Q 045735 354 SLL 356 (378)
Q Consensus 354 sl~ 356 (378)
|++
T Consensus 371 ~~~ 373 (373)
T PLN03215 371 SFL 373 (373)
T ss_pred ccC
Confidence 653
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=4.1e-10 Score=73.04 Aligned_cols=43 Identities=21% Similarity=0.545 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHHHHH
Q 045735 11 NADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHK 53 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~ 53 (378)
|..||+|++.+||+.||++++.++.+|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988766553
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.87 E-value=2.1e-07 Score=92.97 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=129.8
Q ss_pred eeecccceEEEEeC--------CceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecC
Q 045735 108 FVGPYEGIFCLMNG--------NKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTK 179 (378)
Q Consensus 108 ~~~s~~GLll~~~~--------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~ 179 (378)
-++..+|-|.+..+ +.+ ..+||.+++|..+|+++..+ .....+ .++ =|+.+++....
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v-~~Yd~~~n~W~~~~~m~~~R-----~~~~~~--~~~-----g~IYviGG~~~-- 362 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKV-YKINIENKIHVELPPMIKNR-----CRFSLA--VID-----DTIYAIGGQNG-- 362 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceE-EEEECCCCeEeeCCCCcchh-----hceeEE--EEC-----CEEEEECCcCC--
Confidence 34556666655543 135 89999999999999887532 111112 222 35666642111
Q ss_pred cCCcccceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCC--------------------ccEEE
Q 045735 180 IDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGE--------------------NHVII 239 (378)
Q Consensus 180 ~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--------------------~~~il 239 (378)
......+|+|++.+++|+.++. +|........+.++|.+|-+...... ...+.
T Consensus 363 ---~~~~~sve~Ydp~~~~W~~~~~----mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 363 ---TNVERTIECYTMGDDKWKMLPD----MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred ---CCCCceEEEEECCCCeEEECCC----CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 1124579999999999998874 33322222678889999998754310 13689
Q ss_pred EEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEecCC-CCEE-EEEEEcC---CeeEEEEEEcCCCcceeceEEEE
Q 045735 240 SFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALDEI-KKCY-QLWVLKE---RCWIKQFTIGPFIEAYNPLGLWK 313 (378)
Q Consensus 240 ~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~~-~~~~-~IW~L~~---~~W~~~~~i~~~~~~~~~~~~~~ 313 (378)
+||+.+++|..++ +|... ....+++.+|+|.++..... .... .+-+.+- .+|+....++... ...-+ +.-
T Consensus 436 ~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~-~~~ 511 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHT-ILH 511 (557)
T ss_pred EECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-cccee-EEE
Confidence 9999999999874 33332 22567889999998754211 1111 2334443 3799876554221 11112 223
Q ss_pred CCeEEEEee-CC--EEEEEeCCCCeEEEEEEece
Q 045735 314 NGEIFLESS-DG--QLLLYDPNAQEMRDLGLRGL 344 (378)
Q Consensus 314 ~g~ill~~~-~~--~~~~yd~~t~~~~~v~~~~~ 344 (378)
+|+|++..+ ++ .+-.||++|++|..+..+..
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788888754 22 48899999999998876433
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.78 E-value=1.7e-09 Score=70.51 Aligned_cols=45 Identities=38% Similarity=0.545 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHHHHHhh
Q 045735 11 NADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQ 55 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~ 55 (378)
+.+||+|++.+||.+||++++++++.|||.|+.+++++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999999876654
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=5.6e-09 Score=65.53 Aligned_cols=39 Identities=38% Similarity=0.686 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhcCCccccchhhccccchhhhhCCHHHHH
Q 045735 14 LPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIH 52 (378)
Q Consensus 14 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 52 (378)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.69 E-value=2.6e-06 Score=83.75 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=120.0
Q ss_pred ccceEEEEeC-------CceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcc
Q 045735 112 YEGIFCLMNG-------NKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYY 184 (378)
Q Consensus 112 ~~GLll~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~ 184 (378)
.++.+.+..+ ... ..+||.+++|..+|+++..+ .....+ ..| -++..++.. .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v-~~Ydp~~~~W~~~~~m~~~r-----~~~~~v--~~~-----~~iYviGG~--~------ 328 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNA-IAVNYISNNWIPIPPMNSPR-----LYASGV--PAN-----NKLYVVGGL--P------ 328 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeE-EEEECCCCEEEECCCCCchh-----hcceEE--EEC-----CEEEEECCc--C------
Confidence 4555555443 145 78999999999999887532 111111 222 356565421 1
Q ss_pred cceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCcccE
Q 045735 185 DFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPL 264 (378)
Q Consensus 185 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l 264 (378)
....++.|+..+++|..++. ++.......++.++|.+|-+....+....+-.||+.+++|+.++.+...... ...
T Consensus 329 ~~~sve~ydp~~n~W~~~~~----l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~ 403 (480)
T PHA02790 329 NPTSVERWFHGDAAWVNMPS----LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA 403 (480)
T ss_pred CCCceEEEECCCCeEEECCC----CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE
Confidence 12458999999999998864 3322222267889999999876542223678999999999987443322222 355
Q ss_pred EEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEEeeC------CEEEEEeCCCCeEEE
Q 045735 265 GLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSD------GQLLLYDPNAQEMRD 338 (378)
Q Consensus 265 ~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~------~~~~~yd~~t~~~~~ 338 (378)
+..+|+|.++.. ..+++-.+...|+..-.+.. +.. ..-.+.-+|+|++..+. ..+-.||+++++|+-
T Consensus 404 ~~~~~~IYv~GG-----~~e~ydp~~~~W~~~~~m~~-~r~-~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 404 LVFGRRLFLVGR-----NAEFYCESSNTWTLIDDPIY-PRD-NPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCEEEEECC-----ceEEecCCCCcEeEcCCCCC-Ccc-ccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 678999988542 23444333388997654421 211 11222337888887431 358899999999965
Q ss_pred E
Q 045735 339 L 339 (378)
Q Consensus 339 v 339 (378)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 3
No 10
>PHA03098 kelch-like protein; Provisional
Probab=98.66 E-value=3.9e-06 Score=83.88 Aligned_cols=193 Identities=10% Similarity=0.083 Sum_probs=118.3
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGF 202 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 202 (378)
.+ +.+||.|++|..+|+++..+ .....+ ..+ =++..++.... ......+++|+..+++|+..
T Consensus 312 ~v-~~yd~~~~~W~~~~~~~~~R-----~~~~~~--~~~-----~~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 312 SV-VSYDTKTKSWNKVPELIYPR-----KNPGVT--VFN-----NRIYVIGGIYN-----SISLNTVESWKPGESKWREE 373 (534)
T ss_pred cE-EEEeCCCCeeeECCCCCccc-----ccceEE--EEC-----CEEEEEeCCCC-----CEecceEEEEcCCCCceeeC
Confidence 45 89999999999999877432 111111 111 24555542110 12245789999999999987
Q ss_pred cCCCCCCCccccCCCceEECceEEEEeeecCC--c-cEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEecC
Q 045735 203 RGFKLGRDYVCGRIDSTYWNGVCYWLAREEGE--N-HVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALDE 278 (378)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~-~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~ 278 (378)
... |........+.++|.+|-+...... . ..+..||+.+++|..++ +|.... ....+..+|+|.++....
T Consensus 374 ~~l----p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 374 PPL----IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--GGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred CCc----CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--CceEEEECCEEEEECCcc
Confidence 643 3222222667889999998763221 1 47899999999999874 343322 234566789988864311
Q ss_pred CC----CEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEECCeEEEEee------CCEEEEEeCCCCeEEEEEE
Q 045735 279 IK----KCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESS------DGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 279 ~~----~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~------~~~~~~yd~~t~~~~~v~~ 341 (378)
.. ..-.+|+.+- .+|..+-.++. +....... .-+++|++..+ ...+..||+++++|+.+..
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 11 1223677765 88998643321 11111122 23778877643 2469999999999988754
No 11
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.62 E-value=4e-06 Score=83.72 Aligned_cols=207 Identities=11% Similarity=0.123 Sum_probs=133.6
Q ss_pred eeecccceEEEEeC--------CceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecC
Q 045735 108 FVGPYEGIFCLMNG--------NKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTK 179 (378)
Q Consensus 108 ~~~s~~GLll~~~~--------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~ 179 (378)
-++..+|.|....+ +.+ ..+||.+.+|..+|++...+. ....+.+ ..++.++....
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~v-e~YD~~~~~W~~~a~M~~~R~-----~~~v~~l-------~g~iYavGG~d--- 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSV-ERYDPRTNQWTPVAPMNTKRS-----DFGVAVL-------DGKLYAVGGFD--- 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceE-EEecCCCCceeccCCccCccc-----cceeEEE-------CCEEEEEeccc---
Confidence 56677777766643 245 999999999999999986421 1111212 35666664322
Q ss_pred cCCcccceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCc---cEEEEEECCCceeeee-CCCC
Q 045735 180 IDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN---HVIISFDLSDEVIQEI-ESPC 255 (378)
Q Consensus 180 ~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~il~fD~~~e~~~~i-~~P~ 255 (378)
+......+|.|+..++.|..+... +..-.....+.++|.+|-+....+.. ..+.+||+.+++|..+ +++.
T Consensus 391 --g~~~l~svE~YDp~~~~W~~va~m----~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~ 464 (571)
T KOG4441|consen 391 --GEKSLNSVECYDPVTNKWTPVAPM----LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT 464 (571)
T ss_pred --cccccccEEEecCCCCcccccCCC----CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc
Confidence 123466899999999999999743 22111227789999999998755432 5899999999999987 3444
Q ss_pred CCCCCcccEEEECCeEEEEEecCC---CCEEEEEEEcCCeeEEEEEEcCCCcceeceEE-EECCeEEEEee------CCE
Q 045735 256 TPELTHGPLGLYDNSLSLIALDEI---KKCYQLWVLKERCWIKQFTIGPFIEAYNPLGL-WKNGEIFLESS------DGQ 325 (378)
Q Consensus 256 ~~~~~~~~l~~~~g~L~~~~~~~~---~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~-~~~g~ill~~~------~~~ 325 (378)
.... ..+.+++|+|.++..... ..+++..--+...|..+..+... ....++ .-++.+++..+ -..
T Consensus 465 ~R~~--~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 465 RRSG--FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred cccc--ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCccccce
Confidence 4322 458889999999754222 22233332222889988444322 222222 23677777633 235
Q ss_pred EEEEeCCCCeEEEEEE
Q 045735 326 LLLYDPNAQEMRDLGL 341 (378)
Q Consensus 326 ~~~yd~~t~~~~~v~~ 341 (378)
+-.||+++++|+....
T Consensus 540 ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 540 VECYDPETDTWTEVTE 555 (571)
T ss_pred eEEcCCCCCceeeCCC
Confidence 8999999999998754
No 12
>PLN02153 epithiospecifier protein
Probab=98.59 E-value=2.6e-05 Score=73.31 Aligned_cols=203 Identities=10% Similarity=0.076 Sum_probs=116.0
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGF 202 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 202 (378)
.+ +++||.+++|..+|+...... ..........++ =+++.+..... ......+++|+..+++|+.+
T Consensus 51 ~~-~~yd~~~~~W~~~~~~~~~p~---~~~~~~~~~~~~-----~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 51 DL-YVFDFNTHTWSIAPANGDVPR---ISCLGVRMVAVG-----TKLYIFGGRDE-----KREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred cE-EEEECCCCEEEEcCccCCCCC---CccCceEEEEEC-----CEEEEECCCCC-----CCccCcEEEEECCCCEEEEe
Confidence 46 999999999999886542110 000011111111 24555532111 11234689999999999987
Q ss_pred cCCCC-CCCccccCCCceEECceEEEEeeecCC-------c-cEEEEEECCCceeeeeCCCC---CCCCCcccEEEECCe
Q 045735 203 RGFKL-GRDYVCGRIDSTYWNGVCYWLAREEGE-------N-HVIISFDLSDEVIQEIESPC---TPELTHGPLGLYDNS 270 (378)
Q Consensus 203 ~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~-------~-~~il~fD~~~e~~~~i~~P~---~~~~~~~~l~~~~g~ 270 (378)
..... ..|........+..+|.+|-+...... . ..+.+||+.+.+|..++.+. ... ....++..+|+
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r-~~~~~~~~~~~ 195 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR-GGAGFAVVQGK 195 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC-CcceEEEECCe
Confidence 64210 112111122567889999988664311 1 25889999999999876432 111 11356678999
Q ss_pred EEEEEecC--------C-CCEEEEEEEcC--CeeEEEEEEc--CCCcceeceEEEECCeEEEEeeC--------------
Q 045735 271 LSLIALDE--------I-KKCYQLWVLKE--RCWIKQFTIG--PFIEAYNPLGLWKNGEIFLESSD-------------- 323 (378)
Q Consensus 271 L~~~~~~~--------~-~~~~~IW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~ill~~~~-------------- 323 (378)
|.++.... . ...-+|++++- .+|+++...+ |.+...... +.-++.|++..+.
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccc
Confidence 98863210 0 01124566554 8899876543 222111112 2236777766331
Q ss_pred -CEEEEEeCCCCeEEEEEE
Q 045735 324 -GQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 324 -~~~~~yd~~t~~~~~v~~ 341 (378)
..++.||+++++|+++..
T Consensus 275 ~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccEEEEEcCccEEEeccC
Confidence 268999999999999864
No 13
>PHA02713 hypothetical protein; Provisional
Probab=98.59 E-value=5.5e-06 Score=82.84 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=118.3
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGF 202 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 202 (378)
.+ ..+||.+++|..+++++... .....+ ..+ =+|..++..... ......++.|+..++.|..+
T Consensus 273 ~v-~~yd~~~~~W~~l~~mp~~r-----~~~~~a--~l~-----~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 273 CI-LVYNINTMEYSVISTIPNHI-----INYASA--IVD-----NEIIIAGGYNFN----NPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred CE-EEEeCCCCeEEECCCCCccc-----cceEEE--EEC-----CEEEEEcCCCCC----CCccceEEEEECCCCeEeeC
Confidence 35 78999999999998887532 111111 111 255555421000 11245789999999999887
Q ss_pred cCCCCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEecCC
Q 045735 203 RGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALDEI 279 (378)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~~ 279 (378)
+. ++..-.....+.++|.+|-+.+..+.. ..+-+||+.+++|..++ +|.... ....+.++|+|.++.....
T Consensus 336 ~~----m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~--~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 336 PP----MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS--SYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CC----CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc--cccEEEECCEEEEEeCCCc
Confidence 64 332222226788999999998764321 46899999999999874 343322 2456678999998753211
Q ss_pred C-------------------CEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEECCeEEEEeeC-------CEEEEEeC
Q 045735 280 K-------------------KCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSD-------GQLLLYDP 331 (378)
Q Consensus 280 ~-------------------~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~-------~~~~~yd~ 331 (378)
. ..-.+...+- ..|+.+-.+.... ...-.+.-+|+|++..+. ..+..||+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence 0 0123444443 7898765432211 122223337888877431 23679999
Q ss_pred CC-CeEEEEEE
Q 045735 332 NA-QEMRDLGL 341 (378)
Q Consensus 332 ~t-~~~~~v~~ 341 (378)
++ ++|+.+..
T Consensus 488 ~~~~~W~~~~~ 498 (557)
T PHA02713 488 NTYNGWELITT 498 (557)
T ss_pred CCCCCeeEccc
Confidence 99 89998753
No 14
>PLN02193 nitrile-specifier protein
Probab=98.51 E-value=2.3e-05 Score=76.94 Aligned_cols=238 Identities=10% Similarity=0.056 Sum_probs=136.3
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGF 202 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 202 (378)
.+ +++||.+.+|..+|+.... +. ..........++ =++..+.-. .. ......+++|++.+++|+.+
T Consensus 194 ~v-~~yD~~~~~W~~~~~~g~~-P~--~~~~~~~~v~~~-----~~lYvfGG~--~~---~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 194 HL-YVFDLETRTWSISPATGDV-PH--LSCLGVRMVSIG-----STLYVFGGR--DA---SRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred cE-EEEECCCCEEEeCCCCCCC-CC--CcccceEEEEEC-----CEEEEECCC--CC---CCCCccEEEEECCCCEEEEc
Confidence 35 8999999999987754211 10 000111111222 134444311 10 11245689999999999988
Q ss_pred cCCCCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeCCCCCCCC--CcccEEEECCeEEEEEecC
Q 045735 203 RGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIESPCTPEL--THGPLGLYDNSLSLIALDE 278 (378)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~~P~~~~~--~~~~l~~~~g~L~~~~~~~ 278 (378)
.... ..|........+..++.+|.+....... ..+.+||+.+.+|..++.|..... ....++..+|++.++....
T Consensus 260 ~~~~-~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 260 TPVE-EGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred CcCC-CCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 6421 1121111225677899999887643211 468899999999998875432111 1245667799988864322
Q ss_pred CCCEEEEEEEcC--CeeEEEEEEc--CCCcceeceEEEECCeEEEEeeC---------------CEEEEEeCCCCeEEEE
Q 045735 279 IKKCYQLWVLKE--RCWIKQFTIG--PFIEAYNPLGLWKNGEIFLESSD---------------GQLLLYDPNAQEMRDL 339 (378)
Q Consensus 279 ~~~~~~IW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~ill~~~~---------------~~~~~yd~~t~~~~~v 339 (378)
....-++|+++- .+|.++..+. |.+...... +.-+++|++..+. ..++.||++|++|+++
T Consensus 339 g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 339 GCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 222346777765 8899876653 222122222 2336777766321 2489999999999998
Q ss_pred EEece----e-E---EE--EEe---eeccccccccccccCCCCcceEEeec
Q 045735 340 GLRGL----W-F---YV--HCF---RESLLSIKREGKLLGGFDIPWHILGV 377 (378)
Q Consensus 340 ~~~~~----~-~---~~--~~y---~~sl~~~~~~~~~~~~~~~~~~~~~~ 377 (378)
...+. + . .. ..+ ...++-++.-...+..|.=.|.+ ++
T Consensus 418 ~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~-~~ 467 (470)
T PLN02193 418 DKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY-GI 467 (470)
T ss_pred ccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE-ec
Confidence 64321 1 1 11 111 13477777766666777777865 44
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.44 E-value=3.5e-05 Score=71.90 Aligned_cols=151 Identities=12% Similarity=0.102 Sum_probs=94.5
Q ss_pred ceeEEEEEcCCCCc----ccccCCCCCCCccccCCCceEECceEEEEeeecCC-c-cEEEEEECCCceeeeeC-CCCCCC
Q 045735 186 FSHIAVYNLSTDSW----RGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGE-N-HVIISFDLSDEVIQEIE-SPCTPE 258 (378)
Q Consensus 186 ~~~~~vyss~~~~W----~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~-~~il~fD~~~e~~~~i~-~P~~~~ 258 (378)
...++.|+..++.| +..+ ++|.......++.++|.+|-+...... . ..+.+||+.+++|+.++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~----~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG----NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC----CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 45788899999998 3333 344322223678889999998764221 1 47999999999999885 564332
Q ss_pred CCcccEEEECCeEEEEEecCCCCEEEEEEEcC--CeeEEEEEEcC--CCc-ceece-EEEECCeEEEEee----------
Q 045735 259 LTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE--RCWIKQFTIGP--FIE-AYNPL-GLWKNGEIFLESS---------- 322 (378)
Q Consensus 259 ~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~--~~W~~~~~i~~--~~~-~~~~~-~~~~~g~ill~~~---------- 322 (378)
. ....+..+++|.++.........++|+.+- .+|+.+..+.. .+. ..... .+..++.|++..+
T Consensus 163 ~-~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 163 V-QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred C-cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 2 234567899999875422222345666665 78987654321 110 01111 1223567776532
Q ss_pred ----------------------------CCEEEEEeCCCCeEEEEEE
Q 045735 323 ----------------------------DGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 323 ----------------------------~~~~~~yd~~t~~~~~v~~ 341 (378)
...+..||+++++|+.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 1469999999999998863
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.42 E-value=1.7e-05 Score=79.30 Aligned_cols=193 Identities=12% Similarity=0.158 Sum_probs=124.5
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGF 202 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 202 (378)
.+ ..+||.+++|..+.+++..+ .. .+.+.-. -+|..++.... +......++.|++.+++|..+
T Consensus 302 ~v-e~yd~~~~~w~~~a~m~~~r------~~--~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 302 SV-ECYDPKTNEWSSLAPMPSPR------CR--VGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ee-EEecCCcCcEeecCCCCccc------cc--ccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceecc
Confidence 44 78999999999998888542 11 1222111 15555543210 123578999999999999997
Q ss_pred cCCCCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEec-C
Q 045735 203 RGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALD-E 278 (378)
Q Consensus 203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~-~ 278 (378)
+.. ...-..-..+.++|.+|-+...++.. ..+-.||+.+++|..+. ++.. . .....++++|+|+++... .
T Consensus 365 a~M----~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r-~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 APM----NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-R-SGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred CCc----cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-e-eeeEEEEECCEEEEEcCcCC
Confidence 642 22111117789999999999877543 57999999999999875 4442 2 225678899999997542 2
Q ss_pred CC---CEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEEee------CCEEEEEeCCCCeEEEEE
Q 045735 279 IK---KCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESS------DGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 279 ~~---~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~------~~~~~~yd~~t~~~~~v~ 340 (378)
.. ..++..--....|..+-.+...... ..+++ -++.|+.+.+ ...+-.||+++++|..+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CccccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 22 2233332222789887665433211 12222 2788888744 224888999999999985
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.29 E-value=0.00033 Score=65.97 Aligned_cols=217 Identities=13% Similarity=0.125 Sum_probs=121.2
Q ss_pred eecccceEEEEeC---CceEEEEec--cccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCc-CC
Q 045735 109 VGPYEGIFCLMNG---NKYISLWNL--ATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKI-DF 182 (378)
Q Consensus 109 ~~s~~GLll~~~~---~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~-~~ 182 (378)
.+..++-|.+..+ ..+ +++++ .+++|..+|+++... ......+ ..+ =+|..+........ ..
T Consensus 13 ~~~~~~~vyv~GG~~~~~~-~~~d~~~~~~~W~~l~~~p~~~----R~~~~~~--~~~-----~~iYv~GG~~~~~~~~~ 80 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSW-YKLDLKKPSKGWQKIADFPGGP----RNQAVAA--AID-----GKLYVFGGIGKANSEGS 80 (346)
T ss_pred EEEECCEEEEEccccCCee-EEEECCCCCCCceECCCCCCCC----cccceEE--EEC-----CEEEEEeCCCCCCCCCc
Confidence 3345555555443 355 77774 778899999876311 1111111 112 25555542110000 00
Q ss_pred cccceeEEEEEcCCCCcccccCCCCCCCccccCCCce-EECceEEEEeeecCC---------------------------
Q 045735 183 YYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDST-YWNGVCYWLAREEGE--------------------------- 234 (378)
Q Consensus 183 ~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~--------------------------- 234 (378)
......++.|+..+++|+.+.. ..|.......++ .++|.+|-+......
T Consensus 81 ~~~~~~v~~Yd~~~~~W~~~~~---~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 81 PQVFDDVYRYDPKKNSWQKLDT---RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred ceecccEEEEECCCCEEecCCC---CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 0123578999999999999863 122221111233 579999988654210
Q ss_pred ---------ccEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEecC--CCCEEEEEEEc--C--CeeEEEEE
Q 045735 235 ---------NHVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALDE--IKKCYQLWVLK--E--RCWIKQFT 298 (378)
Q Consensus 235 ---------~~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~--~~~~~~IW~L~--~--~~W~~~~~ 298 (378)
...+.+||+.+++|+.++ +|.... ....++..+|+|.++.... .....++|..+ . ..|...-.
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcC-CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 026899999999999884 443222 2245677899999874321 12334565543 2 58988765
Q ss_pred EcCCCc-----ceeceEEEECCeEEEEeeC-----------------------CEEEEEeCCCCeEEEEEE
Q 045735 299 IGPFIE-----AYNPLGLWKNGEIFLESSD-----------------------GQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 299 i~~~~~-----~~~~~~~~~~g~ill~~~~-----------------------~~~~~yd~~t~~~~~v~~ 341 (378)
++.... .....++.-+|+|++..+. ..+-.||+++++|+.+..
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 532110 0111123347888776431 135689999999988753
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.14 E-value=0.00052 Score=65.47 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=120.1
Q ss_pred eecccceEEEEeC---CceEEEEecc--ccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCC-
Q 045735 109 VGPYEGIFCLMNG---NKYISLWNLA--TQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDF- 182 (378)
Q Consensus 109 ~~s~~GLll~~~~---~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~- 182 (378)
.+..++-|.+..+ ..+ +++++. +++|..+|+++... ......+ ..+ =++..+.........+
T Consensus 34 ~~~~~~~iyv~gG~~~~~~-~~~d~~~~~~~W~~l~~~p~~~----r~~~~~v--~~~-----~~IYV~GG~~~~~~~~~ 101 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSW-YKLDLNAPSKGWTKIAAFPGGP----REQAVAA--FID-----GKLYVFGGIGKTNSEGS 101 (376)
T ss_pred EEEECCEEEEEeCCCCCeE-EEEECCCCCCCeEECCcCCCCC----cccceEE--EEC-----CEEEEEcCCCCCCCCCc
Confidence 4456666665443 245 777775 57899988765311 1111111 111 1344443211000000
Q ss_pred cccceeEEEEEcCCCCcccccCCCCCCCccccCCCceE-ECceEEEEeeecCC---------------------------
Q 045735 183 YYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTY-WNGVCYWLAREEGE--------------------------- 234 (378)
Q Consensus 183 ~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~--------------------------- 234 (378)
......+++|+..+++|+.+.. ..|.......++. .+|.+|-+......
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~---~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDT---RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCC---CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 0113568999999999999863 1222211113344 79999998764210
Q ss_pred ---------ccEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEec--CCCCEEEEEEEc--C--CeeEEEEE
Q 045735 235 ---------NHVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALD--EIKKCYQLWVLK--E--RCWIKQFT 298 (378)
Q Consensus 235 ---------~~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~--~~~~~~~IW~L~--~--~~W~~~~~ 298 (378)
...+..||+.+++|..+. +|..... ...++..+++|.++... ......++|..+ . .+|.++..
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~-~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA-GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC-cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 026899999999999874 4432221 24566779999987531 123445666543 2 78998776
Q ss_pred EcCCCc------ceeceEEEECCeEEEEeeCC-----------------------EEEEEeCCCCeEEEEEE
Q 045735 299 IGPFIE------AYNPLGLWKNGEIFLESSDG-----------------------QLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 299 i~~~~~------~~~~~~~~~~g~ill~~~~~-----------------------~~~~yd~~t~~~~~v~~ 341 (378)
++.... .....++.-+++|++..+.. .+-.||+++++|+.+..
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 329 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE 329 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc
Confidence 643210 11111233477887763311 23479999999988753
No 19
>PLN02193 nitrile-specifier protein
Probab=98.07 E-value=0.00085 Score=65.94 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCcc-ccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeCC----CCCCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDYV-CGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIES----PCTPEL 259 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~~----P~~~~~ 259 (378)
..+++|+..+++|..+.... ..|.. ......+.+++.+|-+....... ..+.+||+.+.+|+.+.. |... .
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R-~ 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR-S 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc-c
Confidence 45899999999999765311 12221 11125678899999887643211 368899999999998743 2221 1
Q ss_pred CcccEEEECCeEEEEEec-CCCCEEEEEEEcC--CeeEEEEEEcCC--CcceeceEEEECCeEEEEee-----CCEEEEE
Q 045735 260 THGPLGLYDNSLSLIALD-EIKKCYQLWVLKE--RCWIKQFTIGPF--IEAYNPLGLWKNGEIFLESS-----DGQLLLY 329 (378)
Q Consensus 260 ~~~~l~~~~g~L~~~~~~-~~~~~~~IW~L~~--~~W~~~~~i~~~--~~~~~~~~~~~~g~ill~~~-----~~~~~~y 329 (378)
....+..+++|.++.-. .....-++|+.+- .+|......... ......+.+ -++++++..+ ...+..|
T Consensus 271 -~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 271 -FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred -ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEE
Confidence 13455678998886431 1222234566554 889875432111 111122222 3677776632 2469999
Q ss_pred eCCCCeEEEEEE
Q 045735 330 DPNAQEMRDLGL 341 (378)
Q Consensus 330 d~~t~~~~~v~~ 341 (378)
|+++++|+++..
T Consensus 349 D~~t~~W~~~~~ 360 (470)
T PLN02193 349 DPVQDKWTQVET 360 (470)
T ss_pred ECCCCEEEEecc
Confidence 999999999864
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.04 E-value=0.0004 Score=69.55 Aligned_cols=191 Identities=12% Similarity=0.109 Sum_probs=113.0
Q ss_pred EEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCcccccCC
Q 045735 126 SLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGF 205 (378)
Q Consensus 126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~~ 205 (378)
.-+|+.+++|..+++.+.. ... .....+ -+++.++..... ......+..|+..+++|...+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~-----~~lyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~ 329 (534)
T PHA03098 267 ITNYSPLSEINTIIDIHYV------YCF--GSVVLN-----NVIYFIGGMNKN----NLSVNSVVSYDTKTKSWNKVPEL 329 (534)
T ss_pred eecchhhhhcccccCcccc------ccc--eEEEEC-----CEEEEECCCcCC----CCeeccEEEEeCCCCeeeECCCC
Confidence 5678889999888765431 011 111111 244444321100 11234688999999999887643
Q ss_pred CCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEec--CCC
Q 045735 206 KLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIALD--EIK 280 (378)
Q Consensus 206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~--~~~ 280 (378)
+..-.....+.++|.+|-+....... ..+..||+.+.+|+.++ +|... . ....+..+|++.++... ...
T Consensus 330 ----~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~-~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 330 ----IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-Y-NPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred ----CcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-c-cceEEEECCEEEEECCcCCCCc
Confidence 22111226788899999987654321 46889999999999874 44432 2 24456789999887431 111
Q ss_pred CEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEECCeEEEEeeC---------CEEEEEeCCCCeEEEEEE
Q 045735 281 KCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSD---------GQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 281 ~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~---------~~~~~yd~~t~~~~~v~~ 341 (378)
..=.+++.+- .+|.....++ .+ .....++.-++.|++..+. ..+..||+++++|+++..
T Consensus 404 ~~~~v~~yd~~t~~W~~~~~~p-~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGSPLP-IS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred ccceEEEEeCCCCeeeecCCCC-cc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 1223455544 7898765432 11 1122233347787776421 248999999999998853
No 21
>PLN02153 epithiospecifier protein
Probab=98.02 E-value=0.00099 Score=62.64 Aligned_cols=151 Identities=11% Similarity=0.169 Sum_probs=91.4
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCcc-ccCCCceEECceEEEEeeecCCc--cEEEEEECCCceeeeeCC------CCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDYV-CGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQEIES------PCTP 257 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~~i~~------P~~~ 257 (378)
..+++|+..++.|+...... ..|.. ......+.++|.+|-+....... ..+.+||+.+.+|..++- |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 46899999999999876421 12221 11115688899999887643321 368899999999998742 2221
Q ss_pred CCCcccEEEECCeEEEEEecCCC-------CEEEEEEEcC--CeeEEEEEEcC--CCcceeceEEEECCeEEEEee----
Q 045735 258 ELTHGPLGLYDNSLSLIALDEIK-------KCYQLWVLKE--RCWIKQFTIGP--FIEAYNPLGLWKNGEIFLESS---- 322 (378)
Q Consensus 258 ~~~~~~l~~~~g~L~~~~~~~~~-------~~~~IW~L~~--~~W~~~~~i~~--~~~~~~~~~~~~~g~ill~~~---- 322 (378)
.....+..+++|.++...... ..-+||+.+- .+|..+-.... .......+.+ -+++|++..+
T Consensus 129 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 --TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred --eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 123456778998876431111 1124666654 78997544321 1111112222 2667766421
Q ss_pred ----------CCEEEEEeCCCCeEEEEEE
Q 045735 323 ----------DGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 323 ----------~~~~~~yd~~t~~~~~v~~ 341 (378)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 2458999999999999864
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=97.85 E-value=0.0007 Score=66.70 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=89.7
Q ss_pred eeecccceEEEEeC----CceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCc
Q 045735 108 FVGPYEGIFCLMNG----NKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFY 183 (378)
Q Consensus 108 ~~~s~~GLll~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~ 183 (378)
..++.+|-|.+..+ ..+ ..++|.+++|..+|+++..+ ... .+..++ =++..++.. ..
T Consensus 313 ~~v~~~~~iYviGG~~~~~sv-e~ydp~~n~W~~~~~l~~~r-----~~~--~~~~~~-----g~IYviGG~--~~---- 373 (480)
T PHA02790 313 SGVPANNKLYVVGGLPNPTSV-ERWFHGDAAWVNMPSLLKPR-----CNP--AVASIN-----NVIYVIGGH--SE---- 373 (480)
T ss_pred eEEEECCEEEEECCcCCCCce-EEEECCCCeEEECCCCCCCC-----ccc--EEEEEC-----CEEEEecCc--CC----
Confidence 45567888766654 245 78999999999999887532 111 122222 355555421 11
Q ss_pred ccceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCceeeeeC-CCCCCCCCcc
Q 045735 184 YDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIE-SPCTPELTHG 262 (378)
Q Consensus 184 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~ 262 (378)
....++.|++++++|+..+.. +........+.++|.+|-+.. ..-.||+.+++|+.++ +|... ...
T Consensus 374 -~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~~~~~~~IYv~GG------~~e~ydp~~~~W~~~~~m~~~r--~~~ 440 (480)
T PHA02790 374 -TDTTTEYLLPNHDQWQFGPST----YYPHYKSCALVFGRRLFLVGR------NAEFYCESSNTWTLIDDPIYPR--DNP 440 (480)
T ss_pred -CCccEEEEeCCCCEEEeCCCC----CCccccceEEEECCEEEEECC------ceEEecCCCCcEeEcCCCCCCc--ccc
Confidence 134689999999999987642 222122266789999998753 3567999999999874 33222 225
Q ss_pred cEEEECCeEEEEEe
Q 045735 263 PLGLYDNSLSLIAL 276 (378)
Q Consensus 263 ~l~~~~g~L~~~~~ 276 (378)
.+++.+|+|.++..
T Consensus 441 ~~~v~~~~IYviGG 454 (480)
T PHA02790 441 ELIIVDNKLLLIGG 454 (480)
T ss_pred EEEEECCEEEEECC
Confidence 67889999998753
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.78 E-value=0.01 Score=56.62 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCc-cccCCCceEECceEEEEeeecC-----CccEEEEEECCCceeeeeC-CCCCCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDY-VCGRIDSTYWNGVCYWLAREEG-----ENHVIISFDLSDEVIQEIE-SPCTPEL 259 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~-----~~~~il~fD~~~e~~~~i~-~P~~~~~ 259 (378)
..+++|+..++.|+..+.. |. .......+.++|.+|.+..... .+.....||+.+.+|..+. +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~----p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGES----PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcC----CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 5689999999999987643 22 1112256778999999886421 1134566788899998774 4543211
Q ss_pred C------cccEEEECCeEEEEEecCCC--------------------CEEEEEEEcCCeeEEEEEEcCCCcceeceEEEE
Q 045735 260 T------HGPLGLYDNSLSLIALDEIK--------------------KCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWK 313 (378)
Q Consensus 260 ~------~~~l~~~~g~L~~~~~~~~~--------------------~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~ 313 (378)
. ....+..+|+|.++...... ...+++-.+...|+..-.++ .+. ....++.-
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp-~~r-~~~~av~~ 342 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP-QGL-AYGVSVSW 342 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC-CCc-cceEEEEe
Confidence 1 01235678998886431100 12345555557898765443 221 12223444
Q ss_pred CCeEEEEeeC-------CEEEEEeCCCCeEE
Q 045735 314 NGEIFLESSD-------GQLLLYDPNAQEMR 337 (378)
Q Consensus 314 ~g~ill~~~~-------~~~~~yd~~t~~~~ 337 (378)
+++|++..+. ..+..|+.+++++.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 7888877431 25788888877664
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=9.8e-06 Score=71.86 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=38.2
Q ss_pred cCCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHH
Q 045735 10 SNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRF 50 (378)
Q Consensus 10 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F 50 (378)
.|..||||++..||+.||.|+|+++..|||+|+++.++...
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 38999999999999999999999999999999999887654
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.71 E-value=0.0041 Score=57.98 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=76.6
Q ss_pred ceEEEEeccccce----ecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCC
Q 045735 123 KYISLWNLATQEL----RRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDS 198 (378)
Q Consensus 123 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~ 198 (378)
.+ ..+|+.+++| ..+|+++..+ ... .+..++ =++..+..... ......+++|+..++.
T Consensus 89 ~v-~~~d~~~~~w~~~~~~~~~lp~~~------~~~-~~~~~~-----~~iYv~GG~~~-----~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 89 SV-YRITLDESKEELICETIGNLPFTF------ENG-SACYKD-----GTLYVGGGNRN-----GKPSNKSYLFNLETQE 150 (323)
T ss_pred eE-EEEEEcCCceeeeeeEcCCCCcCc------cCc-eEEEEC-----CEEEEEeCcCC-----CccCceEEEEcCCCCC
Confidence 45 8899999987 6677766432 111 112222 24555532111 1124578999999999
Q ss_pred cccccCCCCCCCccccCCCceEECceEEEEeeecCCc-cEEEEEECCCceeeeeCCCC-C--CCC--CcccEEEECCeEE
Q 045735 199 WRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN-HVIISFDLSDEVIQEIESPC-T--PEL--THGPLGLYDNSLS 272 (378)
Q Consensus 199 W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~il~fD~~~e~~~~i~~P~-~--~~~--~~~~l~~~~g~L~ 272 (378)
|+.+...+.. +. .....+.++|.+|-+....... ..+.+||+.+++|..++... . ... ....++..+++|.
T Consensus 151 W~~~~~~p~~-~r--~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 151 WFELPDFPGE-PR--VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred eeECCCCCCC-CC--CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 9988643211 11 1115567899999887643221 35789999999999875321 1 100 1123444577887
Q ss_pred EEE
Q 045735 273 LIA 275 (378)
Q Consensus 273 ~~~ 275 (378)
++.
T Consensus 228 v~G 230 (323)
T TIGR03548 228 CIG 230 (323)
T ss_pred EEC
Confidence 753
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.55 E-value=0.033 Score=52.41 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=76.2
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCcc-ccCCCceEECceEEEEeeecCC--c-cEE--EEEECCCceeeee-CCCCCCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDYV-CGRIDSTYWNGVCYWLAREEGE--N-HVI--ISFDLSDEVIQEI-ESPCTPEL 259 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~~--~-~~i--l~fD~~~e~~~~i-~~P~~~~~ 259 (378)
..+++|++.+++|+.++.. |.. ......+.++|.+|-+...... . ..+ ..+|.++.+|..+ ++|.....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~----p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGEN----PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccC----CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 5799999999999998743 221 1122567789999998764321 1 123 4445577799876 34433211
Q ss_pred -----CcccEEEECCeEEEEEecCC--------------------CCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEEC
Q 045735 260 -----THGPLGLYDNSLSLIALDEI--------------------KKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKN 314 (378)
Q Consensus 260 -----~~~~l~~~~g~L~~~~~~~~--------------------~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~ 314 (378)
.....+.++|+|.++.-... ....++|..+..+|+....++. + .....++.-+
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~-~~~~~~~~~~ 321 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ-G-LAYGVSVSWN 321 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC-C-ceeeEEEEcC
Confidence 11235678999988643110 0256777776688988765532 2 1122223347
Q ss_pred CeEEEEee
Q 045735 315 GEIFLESS 322 (378)
Q Consensus 315 g~ill~~~ 322 (378)
++|++..+
T Consensus 322 ~~iyv~GG 329 (346)
T TIGR03547 322 NGVLLIGG 329 (346)
T ss_pred CEEEEEec
Confidence 78777743
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.34 E-value=0.0037 Score=54.67 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=116.8
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEE---eecCcCCcccceeEEEEEcCCCCc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTL---LDTKIDFYYDFSHIAVYNLSTDSW 199 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~---~~~~~~~~~~~~~~~vyss~~~~W 199 (378)
.+ .|.|-.+-+|..+|+.-.+.. .......+.+. .-...||.+..+ +...-......-.+.-|+.+++.|
T Consensus 45 DV-H~lNa~~~RWtk~pp~~~ka~--i~~~yp~VPyq----RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 45 DV-HVLNAENYRWTKMPPGITKAT--IESPYPAVPYQ----RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred ee-EEeeccceeEEecCccccccc--ccCCCCccchh----hcCceEEEEcceEEEEcCccCcccccceeeeeccccccc
Confidence 46 999999999999998432210 00011111110 012344444321 111000122355677899999999
Q ss_pred ccccCCCCCCCccccCCCceEECceEEEEeeecC-C---ccEEEEEECCCceeeeeCC---CCCCCCCcccEEEECCeEE
Q 045735 200 RGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEG-E---NHVIISFDLSDEVIQEIES---PCTPELTHGPLGLYDNSLS 272 (378)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~---~~~il~fD~~~e~~~~i~~---P~~~~~~~~~l~~~~g~L~ 272 (378)
+..+. ..-+|..-....++.++..+|-.....+ . ...+-+||++|.+|+.+.. |+.-.+.+ .-.+.+|.+.
T Consensus 118 ~~p~v-~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-~a~~~~~~MY 195 (392)
T KOG4693|consen 118 KKPEV-EGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH-TASVIDGMMY 195 (392)
T ss_pred cccce-eeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh-hhhhccceEE
Confidence 98763 1123333333366777878887664322 1 1468999999999999854 54433322 2223455555
Q ss_pred EEE----------ecCCCCEEEEEEEcC--CeeEEEEEEcCCCcceece-EEEECCeEEEEee--------CCEEEEEeC
Q 045735 273 LIA----------LDEIKKCYQLWVLKE--RCWIKQFTIGPFIEAYNPL-GLWKNGEIFLESS--------DGQLLLYDP 331 (378)
Q Consensus 273 ~~~----------~~~~~~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~-~~~~~g~ill~~~--------~~~~~~yd~ 331 (378)
++. ...+.-.-+|-.|+- +.|.+-..-...+.-.+.- .+.=+|++++..+ -..++.||+
T Consensus 196 iFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP 275 (392)
T KOG4693|consen 196 IFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP 275 (392)
T ss_pred EeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeeccc
Confidence 542 111222234444444 7888753322222222222 2223788876532 246999999
Q ss_pred CCCeEEEEEEecee
Q 045735 332 NAQEMRDLGLRGLW 345 (378)
Q Consensus 332 ~t~~~~~v~~~~~~ 345 (378)
+|..|+.|...|..
T Consensus 276 ~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 276 KTSMWSVISVRGKY 289 (392)
T ss_pred ccchheeeeccCCC
Confidence 99999999876544
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.94 E-value=0.033 Score=51.84 Aligned_cols=155 Identities=14% Similarity=0.229 Sum_probs=90.5
Q ss_pred ceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecC--Cc----cEEEEEECCCceeeeeCCCCC---
Q 045735 186 FSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEG--EN----HVIISFDLSDEVIQEIESPCT--- 256 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~----~~il~fD~~~e~~~~i~~P~~--- 256 (378)
...+-+|+..++.|..+... .-|..-++.+.|..-..+.-...-.+ .+ ..+.+||+++-+|+.+..+..
T Consensus 153 YkD~W~fd~~trkweql~~~--g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFG--GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhheeeeeeccchheeeccC--CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 44567889999999998742 22222222244444433333222111 11 258999999999999865431
Q ss_pred CCCCcccEEEE-CCeEEEEE----------ecCCCCEEEEEEEcC-------CeeEEEEEEcC--CCcceeceEEEECCe
Q 045735 257 PELTHGPLGLY-DNSLSLIA----------LDEIKKCYQLWVLKE-------RCWIKQFTIGP--FIEAYNPLGLWKNGE 316 (378)
Q Consensus 257 ~~~~~~~l~~~-~g~L~~~~----------~~~~~~~~~IW~L~~-------~~W~~~~~i~~--~~~~~~~~~~~~~g~ 316 (378)
++.. +.+.+. .|.+.++. .+.....-++|.|+- -.|.++..++. .+.....++++++++
T Consensus 231 pRSG-cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~k 309 (521)
T KOG1230|consen 231 PRSG-CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHK 309 (521)
T ss_pred CCCc-ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCc
Confidence 1112 344444 78887741 223456778999976 35788776653 333334456666655
Q ss_pred EEEE---ee------------CCEEEEEeCCCCeEEEEEEec
Q 045735 317 IFLE---SS------------DGQLLLYDPNAQEMRDLGLRG 343 (378)
Q Consensus 317 ill~---~~------------~~~~~~yd~~t~~~~~v~~~~ 343 (378)
-++. .+ -+.|+.||+..++|.+.++++
T Consensus 310 al~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 310 ALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred eEEecceecccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 4432 11 135899999999997765543
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.09 E-value=0.0026 Score=57.51 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCCCc----HHHHHHHHhcCCccccchhhccccchhhhhCCHHHHHH
Q 045735 11 NADLP----ADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHK 53 (378)
Q Consensus 11 ~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~ 53 (378)
+..|| +++.+.||+.|...+|..|+.|||+|+++++++-..++
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 56799 99999999999999999999999999999999876554
No 30
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.06 E-value=0.0027 Score=56.94 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHhcCC-----ccccchhhccccchhhhhCCHHHHHHhh
Q 045735 11 NADLPADAIIEMLLRLP-----VKSLIRYRSVCKSWYILTKSPRFIHKHQ 55 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~~p~F~~~~~ 55 (378)
+..||||+|.+||.++= ..+|-++.+|||.|+-...+|.|.+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 46799999999998764 4999999999999999999999877644
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.05 E-value=0.13 Score=45.37 Aligned_cols=134 Identities=14% Similarity=0.232 Sum_probs=84.9
Q ss_pred ceeEEEEEcCCCCcccccCCCCCCCccc-cCCCceEECceEEEEeeecCC--------c---cEEEEEECCCceeeeeC-
Q 045735 186 FSHIAVYNLSTDSWRGFRGFKLGRDYVC-GRIDSTYWNGVCYWLAREEGE--------N---HVIISFDLSDEVIQEIE- 252 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~--------~---~~il~fD~~~e~~~~i~- 252 (378)
...+++++..|..||.+... ..|..+ .+..++.++|.+|-...+.+. + ..|++||+.|+.|..-+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hccceeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 45678888899999998753 222222 233778888999998866531 1 47999999999997652
Q ss_pred CCCCCCCCc-ccEEEECCeEEEEEe---cCCCCEEEEEEEcC--CeeEEEEEEcCCCcc-eeceEEEECCeEEEEe
Q 045735 253 SPCTPELTH-GPLGLYDNSLSLIAL---DEIKKCYQLWVLKE--RCWIKQFTIGPFIEA-YNPLGLWKNGEIFLES 321 (378)
Q Consensus 253 ~P~~~~~~~-~~l~~~~g~L~~~~~---~~~~~~~~IW~L~~--~~W~~~~~i~~~~~~-~~~~~~~~~g~ill~~ 321 (378)
.|...+... -...+.+|++.++.. ..+...-++|..+- ..|.++..=+..+.. .+--++..++++++..
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFG 309 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEec
Confidence 222222221 345577899888642 12334557888887 789987654433333 3334455578887763
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.67 E-value=0.45 Score=46.99 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecC-C-c-cEEEEEECCCceeeeeCC----CCCCCCC
Q 045735 188 HIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEG-E-N-HVIISFDLSDEVIQEIES----PCTPELT 260 (378)
Q Consensus 188 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~-~-~~il~fD~~~e~~~~i~~----P~~~~~~ 260 (378)
.+.+++.++..|......- ..|........+.++..+|.+..... . . ..|.+||+.|.+|..+.. |... ..
T Consensus 89 dl~~~d~~~~~w~~~~~~g-~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATG-DEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-AG 166 (482)
T ss_pred eeEEeecCCcccccccccC-CCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc-cc
Confidence 5888888888998776421 23332223377888888998887663 1 1 479999999999998743 2221 11
Q ss_pred cccEEEECCeEEEEEec-C-CCCEEEEEEEcC--CeeEEEEEEcCCCc--ceeceEEEECCeEEEE-eeC------CEEE
Q 045735 261 HGPLGLYDNSLSLIALD-E-IKKCYQLWVLKE--RCWIKQFTIGPFIE--AYNPLGLWKNGEIFLE-SSD------GQLL 327 (378)
Q Consensus 261 ~~~l~~~~g~L~~~~~~-~-~~~~~~IW~L~~--~~W~~~~~i~~~~~--~~~~~~~~~~g~ill~-~~~------~~~~ 327 (378)
..+...+.+|.++... . ....-++|+++- ..|.+..+.++.+. ....+.+. ++++++. ..+ ..++
T Consensus 167 -Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 167 -HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred -ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceE
Confidence 3455667778776431 1 225788999887 77999998775542 23334444 4454444 222 2489
Q ss_pred EEeCCCCeEEEEEEe
Q 045735 328 LYDPNAQEMRDLGLR 342 (378)
Q Consensus 328 ~yd~~t~~~~~v~~~ 342 (378)
.+|+.+.+|+++...
T Consensus 245 ~ldl~~~~W~~~~~~ 259 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTG 259 (482)
T ss_pred eeecccceeeecccc
Confidence 999999999866543
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=94.63 E-value=1.1 Score=44.20 Aligned_cols=204 Identities=15% Similarity=0.088 Sum_probs=114.3
Q ss_pred eEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCCccccc
Q 045735 124 YISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFR 203 (378)
Q Consensus 124 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 203 (378)
+ +|+|-.++.|.......... .+ ......+..+ =+++.+.. ... .......+..|+..|+.|+...
T Consensus 90 l-~~~d~~~~~w~~~~~~g~~p-~~-r~g~~~~~~~-------~~l~lfGG--~~~--~~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 90 L-YVLDLESQLWTKPAATGDEP-SP-RYGHSLSAVG-------DKLYLFGG--TDK--KYRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred e-EEeecCCcccccccccCCCC-Cc-ccceeEEEEC-------CeEEEEcc--ccC--CCCChhheEeccCCCCcEEEec
Confidence 6 99999998887665443221 10 0011111111 23333321 110 0112568899999999999887
Q ss_pred CCCCCCCccccCCCceEECceEEEEeeecCC---ccEEEEEECCCceeeeeCCCCCCCC--CcccEEEECCeEEEEEec-
Q 045735 204 GFKLGRDYVCGRIDSTYWNGVCYWLAREEGE---NHVIISFDLSDEVIQEIESPCTPEL--THGPLGLYDNSLSLIALD- 277 (378)
Q Consensus 204 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~il~fD~~~e~~~~i~~P~~~~~--~~~~l~~~~g~L~~~~~~- 277 (378)
.... .|..-.....+..+-.+|-....... ...+.+||+.+.+|..+......-. .....+..+++++++...
T Consensus 156 ~~~~-~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 156 PTGD-PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD 234 (482)
T ss_pred CcCC-CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccc
Confidence 5322 12211222445555555555433321 1579999999999998865322211 124566778888886432
Q ss_pred -CCCCEEEEEEEcC--CeeEEEEEEc--CCCcceeceEEEECCeEEEEe--------eCCEEEEEeCCCCeEEEEEEec
Q 045735 278 -EIKKCYQLWVLKE--RCWIKQFTIG--PFIEAYNPLGLWKNGEIFLES--------SDGQLLLYDPNAQEMRDLGLRG 343 (378)
Q Consensus 278 -~~~~~~~IW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~ill~~--------~~~~~~~yd~~t~~~~~v~~~~ 343 (378)
.+...=++|.|+- ..|.++.... |.+....... ..+..+++.. .-..++.||.+++.|..+...+
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 3445668999987 5676444333 3333444444 3344444431 1345899999999998886544
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.41 E-value=2.2 Score=38.14 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=76.8
Q ss_pred CCCccccCCCceEECceEEEEeeecCCccEEEEEECCCceee-eeCCCCCCCCC----------cccEEEECCeEEE-EE
Q 045735 208 GRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQ-EIESPCTPELT----------HGPLGLYDNSLSL-IA 275 (378)
Q Consensus 208 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~----------~~~l~~~~g~L~~-~~ 275 (378)
.+|..+.+...|..||.+|....... .|+.||+.+++.. ...+|...... ...+.+=+.-|-+ ++
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~~~~s~---~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYa 140 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYNKYNSR---NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYA 140 (250)
T ss_pred EEeceeccCCeEEECCcEEEEecCCc---eEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEe
Confidence 34444444466888999999887543 8999999999888 77888764321 1344444555655 34
Q ss_pred ecCCCCEEEEEEEcC------CeeEEEEEEcCCCcceeceEEEECCeEEEEee-----CCEEEEEeCCCCeEEEEEE
Q 045735 276 LDEIKKCYQLWVLKE------RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESS-----DGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 276 ~~~~~~~~~IW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~-----~~~~~~yd~~t~~~~~v~~ 341 (378)
.......+.|=.|+. +.|.--+ +.......+-+ .|.++.... ..--++||..+++-+.+.+
T Consensus 141 t~~~~g~ivvskld~~tL~v~~tw~T~~---~k~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 141 TEDNNGNIVVSKLDPETLSVEQTWNTSY---PKRSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred cCCCCCcEEEEeeCcccCceEEEEEecc---CchhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 433445688888876 4565322 11212222222 456655432 2236889999888776655
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=93.41 E-value=3.4 Score=36.86 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred CCccccCCCceEECceEEEEeeecCCccEEEEEECCCceeeee-CCCCCC-CC---------CcccEEEECCeEEE-EEe
Q 045735 209 RDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEI-ESPCTP-EL---------THGPLGLYDNSLSL-IAL 276 (378)
Q Consensus 209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i-~~P~~~-~~---------~~~~l~~~~g~L~~-~~~ 276 (378)
+|..+.+...|..||.+|....... .|+-||+.+++.... .+|... +. ....|++-+.-|-+ ++.
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~~s~---~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat 146 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKFNSH---DICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYAT 146 (255)
T ss_pred CCCccccccEEEECceEEEEecCCc---cEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEec
Confidence 4544445477888999999765443 899999999988643 466431 11 11456665666666 454
Q ss_pred cCCCCEEEEEEEcC------CeeEEEEEEcCCCcceeceEEEECCeEEEEe-----eCCEEEEEeCCCCeEEEEEE
Q 045735 277 DEIKKCYQLWVLKE------RCWIKQFTIGPFIEAYNPLGLWKNGEIFLES-----SDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 277 ~~~~~~~~IW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~-----~~~~~~~yd~~t~~~~~v~~ 341 (378)
......|.|-.|+. +.|.-.+. .......+-+ .|.++... +..-.++||..|++-+.+.+
T Consensus 147 ~~~~g~ivvSkLnp~tL~ve~tW~T~~~---k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 147 EQNAGKIVISKLNPATLTIENTWITTYN---KRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred cCCCCCEEEEeeCcccceEEEEEEcCCC---cccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 44667899999987 55655221 1112222222 45555542 12347889999887666554
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.12 E-value=1.1 Score=39.94 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=79.2
Q ss_pred eeecccceEEEEeC-CceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccc
Q 045735 108 FVGPYEGIFCLMNG-NKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDF 186 (378)
Q Consensus 108 ~~~s~~GLll~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 186 (378)
+++.-+|-|-+..- .+++...||.++.-..+|++.... ...-....|+... +++.. . ..
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~-------~gsRriwsdpig~----~witt-w--------g~ 253 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALK-------AGSRRIWSDPIGR----AWITT-W--------GT 253 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCccc-------ccccccccCccCc----EEEec-c--------CC
Confidence 66677777766642 234388999999777788776421 1112334454321 23321 1 25
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCccccCCCceEECce-EEEEeeecCCccEEEEEECCCceeeeeCCCCCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGV-CYWLAREEGENHVIISFDLSDEVIQEIESPCTPE 258 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 258 (378)
-.+.-|+..+.+|++-. +|.......++++|.. .-|+..-+.. .|..||..+++|..+++|....
T Consensus 254 g~l~rfdPs~~sW~eyp-----LPgs~arpys~rVD~~grVW~sea~ag--ai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 254 GSLHRFDPSVTSWIEYP-----LPGSKARPYSMRVDRHGRVWLSEADAG--AIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred ceeeEeCcccccceeee-----CCCCCCCcceeeeccCCcEEeeccccC--ceeecCcccceEEEecCCCCCC
Confidence 66788999999999874 4443333466777643 4566443332 8999999999999999987753
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.08 E-value=11 Score=37.88 Aligned_cols=43 Identities=23% Similarity=0.460 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHHHHH
Q 045735 11 NADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHK 53 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~ 53 (378)
+..||.++...||..|+.+++++++.||+.|+.++.+.....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 6789999999999999999999999999999999998776553
No 38
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.90 E-value=5.9 Score=34.49 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=89.6
Q ss_pred ccceEEEEeCC-ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEE
Q 045735 112 YEGIFCLMNGN-KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIA 190 (378)
Q Consensus 112 ~~GLll~~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 190 (378)
.+|.++....+ .+ +.+|+.|++...--..+.. .... ... .+-+|++.. . .-.+.
T Consensus 35 ~~~~v~~~~~~~~l-~~~d~~tG~~~W~~~~~~~------~~~~--~~~-----~~~~v~v~~----~-------~~~l~ 89 (238)
T PF13360_consen 35 DGGRVYVASGDGNL-YALDAKTGKVLWRFDLPGP------ISGA--PVV-----DGGRVYVGT----S-------DGSLY 89 (238)
T ss_dssp ETTEEEEEETTSEE-EEEETTTSEEEEEEECSSC------GGSG--EEE-----ETTEEEEEE----T-------TSEEE
T ss_pred eCCEEEEEcCCCEE-EEEECCCCCEEEEeecccc------ccce--eee-----ccccccccc----c-------eeeeE
Confidence 67777777544 66 9999999986542222111 0011 111 112222221 1 12566
Q ss_pred EEEcCCC--Cccc-ccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCcee--ee-eCCCCCCCC-----
Q 045735 191 VYNLSTD--SWRG-FRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVI--QE-IESPCTPEL----- 259 (378)
Q Consensus 191 vyss~~~--~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~--~~-i~~P~~~~~----- 259 (378)
.++..++ .|+. .... +..+ ..........++.+|...... .|.++|+.+++- .. +..|.....
T Consensus 90 ~~d~~tG~~~W~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSS-PPAG-VRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EEETTTSCEEEEEEE-SS-CTCS-TB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred ecccCCcceeeeeccccc-cccc-cccccCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 6665554 5884 4321 1122 111113333356676665443 899999987654 32 233322111
Q ss_pred -CcccEEEECCeEEEEEecCCCCEEEEEEEcCC--eeEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeE
Q 045735 260 -THGPLGLYDNSLSLIALDEIKKCYQLWVLKER--CWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEM 336 (378)
Q Consensus 260 -~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~--~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~ 336 (378)
....+...+|.+++... ....+.+ -++.. .|... +. .... .....++.+++...+++++.+|++|++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~--~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP--IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC--SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec--CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 01233333565554333 3333444 33332 36221 21 1111 1122245555556688999999999987
Q ss_pred EEE
Q 045735 337 RDL 339 (378)
Q Consensus 337 ~~v 339 (378)
.+.
T Consensus 235 ~W~ 237 (238)
T PF13360_consen 235 VWQ 237 (238)
T ss_dssp EEE
T ss_pred EeE
Confidence 653
No 39
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=92.24 E-value=2.4 Score=39.97 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcccccCCCCCCCccccCCCceEE-CceEEEEeeecCC----c----cEEEEEECCCceeeeeCCCCCCC
Q 045735 188 HIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYW-NGVCYWLAREEGE----N----HVIISFDLSDEVIQEIESPCTPE 258 (378)
Q Consensus 188 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~----~----~~il~fD~~~e~~~~i~~P~~~~ 258 (378)
.+.+|+..++.|+.+.....+.|.. +. ..|.+ .|.+|........ . ..+..||+.+.+|..+.++....
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRs-sh-q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRS-SH-QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCc-cc-eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 4678999999999998643333431 22 44444 4655544433221 1 35899999999999998876544
Q ss_pred CCc-ccEEEECCeEEEEEe-cCCCC----EEEEEEEcC--CeeEEEEEEc--CCCcceeceEEEECCeEEEEee------
Q 045735 259 LTH-GPLGLYDNSLSLIAL-DEIKK----CYQLWVLKE--RCWIKQFTIG--PFIEAYNPLGLWKNGEIFLESS------ 322 (378)
Q Consensus 259 ~~~-~~l~~~~g~L~~~~~-~~~~~----~~~IW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~ill~~~------ 322 (378)
... -+++..+.+|.++.. .+... -=+||+.+= ..|.+...=+ |.+.-..-+.+.+.|.|++..+
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 322 567777888888632 11111 224566543 8999987622 3332233355555566655411
Q ss_pred ---------CCEEEEEeCCC-----CeEEEEEE
Q 045735 323 ---------DGQLLLYDPNA-----QEMRDLGL 341 (378)
Q Consensus 323 ---------~~~~~~yd~~t-----~~~~~v~~ 341 (378)
-..++..++++ -.|.++..
T Consensus 257 kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred hhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 12378888888 34555543
No 40
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.20 E-value=4.9 Score=35.19 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=68.1
Q ss_pred EECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCC---C-cccEEE--ECC--eEEEEEe---cCCCCEEEEEEE
Q 045735 220 YWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPEL---T-HGPLGL--YDN--SLSLIAL---DEIKKCYQLWVL 288 (378)
Q Consensus 220 ~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~---~-~~~l~~--~~g--~L~~~~~---~~~~~~~~IW~L 288 (378)
.+||-+ ++.... .+...|+.|.++..+|.|..... . ...++- ..+ ++..+.. ......++|..+
T Consensus 3 sCnGLl-c~~~~~----~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYGK----RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecCC----cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 468888 554432 79999999999999986653211 1 011221 011 2221211 113457888888
Q ss_pred cCCeeEEEEEEcCCCcceeceEEEECCeEEEEee-C-----CEEEEEeCCCCeEEE-EEE
Q 045735 289 KERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESS-D-----GQLLLYDPNAQEMRD-LGL 341 (378)
Q Consensus 289 ~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~-~-----~~~~~yd~~t~~~~~-v~~ 341 (378)
...+|.......+.....+. ++.-+|.++.... . ..++.||++++++++ +..
T Consensus 78 ~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 78 GSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred CCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec
Confidence 88889887632221111222 5555888766532 1 169999999999995 654
No 41
>PF13964 Kelch_6: Kelch motif
Probab=92.15 E-value=0.38 Score=30.94 Aligned_cols=36 Identities=8% Similarity=0.189 Sum_probs=29.8
Q ss_pred CceEECceEEEEeeecC-Cc--cEEEEEECCCceeeeeC
Q 045735 217 DSTYWNGVCYWLAREEG-EN--HVIISFDLSDEVIQEIE 252 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~-~~--~~il~fD~~~e~~~~i~ 252 (378)
..|.++|.+|-+..... .. ..+..||+.+.+|+.++
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 66889999999987654 22 58999999999999884
No 42
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.48 E-value=13 Score=33.48 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=114.6
Q ss_pred eecccceEEEEeC-CceEEEEeccccceecCCCCcCCCCCCcccc------c---ceeEEeecCCCCCEEEEEEEEEeec
Q 045735 109 VGPYEGIFCLMNG-NKYISLWNLATQELRRLPKCRASLPPHTTIH------N---SSAGFGLDIVSNDYKLVLILTLLDT 178 (378)
Q Consensus 109 ~~s~~GLll~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~------~---~~~~~~~d~~~~~ykvv~~~~~~~~ 178 (378)
--+-+|-|-+... ...+-=.||.|++....|...-..+.+.-.. . ...-.-+|+++..++=.-+..
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---- 143 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---- 143 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc----
Confidence 3456676666653 2222678999999998886655443221000 0 001112234333333222211
Q ss_pred CcCCcccceeEEEEEcCCCCcccccC-----CC------CCCCccccC-CCceEE--CceEEEEeeecCCccEEEEEECC
Q 045735 179 KIDFYYDFSHIAVYNLSTDSWRGFRG-----FK------LGRDYVCGR-IDSTYW--NGVCYWLAREEGENHVIISFDLS 244 (378)
Q Consensus 179 ~~~~~~~~~~~~vyss~~~~W~~~~~-----~~------~~~~~~~~~-~~~v~~--~G~lywl~~~~~~~~~il~fD~~ 244 (378)
+.....++.-||+...+-|=.-.. .. .-++.-... ..++++ ||.+|+-...++ .|.-.|..
T Consensus 144 --~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn---aiaridp~ 218 (353)
T COG4257 144 --EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN---AIARIDPF 218 (353)
T ss_pred --ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc---ceEEcccc
Confidence 113458888899998888844321 00 011111111 244444 899988765554 89999999
Q ss_pred CceeeeeCCCCCCCC-CcccEEEECCeEEEEEecCCCCEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEECCeEEEE-
Q 045735 245 DEVIQEIESPCTPEL-THGPLGLYDNSLSLIALDEIKKCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWKNGEIFLE- 320 (378)
Q Consensus 245 ~e~~~~i~~P~~~~~-~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~g~ill~- 320 (378)
+..-..++.|..... .+..-..--|++-.... ... .+...+- .+|.. +.++-..--..-+.+...|.+.+.
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittw--g~g--~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW--GTG--SLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEecc--CCc--eeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeec
Confidence 998889998887322 11111112233333211 111 1222222 44554 333311111122445556777774
Q ss_pred eeCCEEEEEeCCCCeEEEEEE
Q 045735 321 SSDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 321 ~~~~~~~~yd~~t~~~~~v~~ 341 (378)
-..+-+.-||.+|.++..+.+
T Consensus 294 a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 294 ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cccCceeecCcccceEEEecC
Confidence 345679999999999988754
No 43
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.73 E-value=12 Score=36.01 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=65.0
Q ss_pred EECceEEEEeeecCCccEEEEEECCCce---eeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEE
Q 045735 220 YWNGVCYWLAREEGENHVIISFDLSDEV---IQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQ 296 (378)
Q Consensus 220 ~~~G~lywl~~~~~~~~~il~fD~~~e~---~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~ 296 (378)
+.++.+|.++..+.....|++.|+.+-. |..+-+|......-..+...++.|.+.........+.|+-++ ..|...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~ 363 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESR 363 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEe
Confidence 4577788777643323799999998764 554333333221113445678898887664444555555555 245554
Q ss_pred EEEcCCCcceeceEEE---ECCeEEEEe----eCCEEEEEeCCCCeEEEEE
Q 045735 297 FTIGPFIEAYNPLGLW---KNGEIFLES----SDGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 297 ~~i~~~~~~~~~~~~~---~~g~ill~~----~~~~~~~yd~~t~~~~~v~ 340 (378)
..-.|.. ....++. .++.++|.. ....++.||+++++.+.+.
T Consensus 364 ~~~~p~~--g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 364 EIPLPEA--GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEESSSS--SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eecCCcc--eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 4322322 2222222 145566652 2357999999999988764
No 44
>PF13964 Kelch_6: Kelch motif
Probab=88.80 E-value=0.84 Score=29.26 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred ceEEEEeccccceecCCCCcC
Q 045735 123 KYISLWNLATQELRRLPKCRA 143 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~ 143 (378)
.+ .++||.|++|..+|+++.
T Consensus 29 ~v-~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 29 DV-ERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cE-EEEcCCCCcEEECCCCCC
Confidence 56 999999999999998874
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.14 E-value=1.7 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=30.1
Q ss_pred CceEECceEEEEeeecC-Cc--cEEEEEECCCceeeeeC
Q 045735 217 DSTYWNGVCYWLAREEG-EN--HVIISFDLSDEVIQEIE 252 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~-~~--~~il~fD~~~e~~~~i~ 252 (378)
.++.++|.+|-+..... .. ..+..||+.+.+|..++
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 67889999999987665 22 68999999999999873
No 46
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=87.45 E-value=4.5 Score=32.02 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=46.9
Q ss_pred EEEEEECCCc--eeeeeCCCCCCCCC------------cccEEEECCeEEEEEec--------CCCCEEEEEEEcC----
Q 045735 237 VIISFDLSDE--VIQEIESPCTPELT------------HGPLGLYDNSLSLIALD--------EIKKCYQLWVLKE---- 290 (378)
Q Consensus 237 ~il~fD~~~e--~~~~i~~P~~~~~~------------~~~l~~~~g~L~~~~~~--------~~~~~~~IW~L~~---- 290 (378)
.|+..|+-.+ .++.|++|...... .-.+++.+|+|-++... .....+.+|.|+.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888998765 77889998765321 03456678999886431 2456899999987
Q ss_pred -CeeEEEEEEcC
Q 045735 291 -RCWIKQFTIGP 301 (378)
Q Consensus 291 -~~W~~~~~i~~ 301 (378)
.+|.+.+.+..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 67999998874
No 47
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.68 E-value=26 Score=33.78 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=86.2
Q ss_pred ceeEEEEEcCCCCccc-ccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCce-eeee---CCCCCCCCC
Q 045735 186 FSHIAVYNLSTDSWRG-FRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV-IQEI---ESPCTPELT 260 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i---~~P~~~~~~ 260 (378)
...+.+|++.+.+=+. ... +.-.. .+-.+..||.+.......+ .|-.||..+.. .+.+ +.|-..
T Consensus 47 S~rvqly~~~~~~~~k~~sr----Fk~~v-~s~~fR~DG~LlaaGD~sG---~V~vfD~k~r~iLR~~~ah~apv~~--- 115 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSR----FKDVV-YSVDFRSDGRLLAAGDESG---HVKVFDMKSRVILRQLYAHQAPVHV--- 115 (487)
T ss_pred ccEEEEEecchhhhhhhHHh----hccce-eEEEeecCCeEEEccCCcC---cEEEeccccHHHHHHHhhccCceeE---
Confidence 5678999998865433 211 11100 1133445699887766554 78999955521 1222 222221
Q ss_pred cccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEE-CCeEEEEe-eCCEEEEEeCCCCeEEE
Q 045735 261 HGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWK-NGEIFLES-SDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 261 ~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~-~g~ill~~-~~~~~~~yd~~t~~~~~ 338 (378)
......++.+.+.+. ++....+|.+.... + +..+.-...+.+-..+.+ ++-+++.. -|+.+-.||.++.+-+-
T Consensus 116 -~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 116 -TKFSPQDNTMLVSGS--DDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred -EEecccCCeEEEecC--CCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 222334555555444 78899999998722 3 444544434445444444 45566663 47889999999986222
Q ss_pred EEE-eceeEEEEEeeec
Q 045735 339 LGL-RGLWFYVHCFRES 354 (378)
Q Consensus 339 v~~-~~~~~~~~~y~~s 354 (378)
..+ +|++.....|.||
T Consensus 191 ~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPS 207 (487)
T ss_pred EEecCCCceeeEEEcCC
Confidence 333 3554566667666
No 48
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.26 E-value=29 Score=32.48 Aligned_cols=170 Identities=12% Similarity=0.140 Sum_probs=89.8
Q ss_pred cceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCC--cccccCCCCCCCccccCCCceEE--Cc-eEEE
Q 045735 153 NSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDS--WRGFRGFKLGRDYVCGRIDSTYW--NG-VCYW 227 (378)
Q Consensus 153 ~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~--W~~~~~~~~~~~~~~~~~~~v~~--~G-~lyw 227 (378)
.....+.++|.. .|-+|.- . ....+.+|+...+. ....... ..+.. ..++.+.+ +| .+|.
T Consensus 144 ~h~H~v~~~pdg-~~v~v~d---l--------G~D~v~~~~~~~~~~~l~~~~~~--~~~~G-~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 144 PHPHQVVFSPDG-RFVYVPD---L--------GADRVYVYDIDDDTGKLTPVDSI--KVPPG-SGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp TCEEEEEE-TTS-SEEEEEE---T--------TTTEEEEEEE-TTS-TEEEEEEE--ECSTT-SSEEEEEE-TTSSEEEE
T ss_pred ccceeEEECCCC-CEEEEEe---c--------CCCEEEEEEEeCCCceEEEeecc--ccccC-CCCcEEEEcCCcCEEEE
Confidence 444566777753 3333321 1 25567888887655 4432221 12211 11222222 55 4666
Q ss_pred EeeecCCccEEEEEECC--CceeeeeC----CCCCCCCC--cccEEE-ECCeEEEEEecCCCCEEEEEEEcC--CeeEEE
Q 045735 228 LAREEGENHVIISFDLS--DEVIQEIE----SPCTPELT--HGPLGL-YDNSLSLIALDEIKKCYQLWVLKE--RCWIKQ 296 (378)
Q Consensus 228 l~~~~~~~~~il~fD~~--~e~~~~i~----~P~~~~~~--~~~l~~-~~g~L~~~~~~~~~~~~~IW~L~~--~~W~~~ 296 (378)
...... .|.+|+.. +.++..++ +|...... ...+.. -+|+...+.. .....|.++.++. +.-..+
T Consensus 209 ~~e~s~---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 209 VNELSN---TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EETTTT---EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTTTEEEE
T ss_pred ecCCCC---cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCCceEEE
Confidence 554443 67777776 66665542 44432221 123333 3676544444 3688999999965 455555
Q ss_pred EEEcCCCcceeceEEEECCeEEEEe--eCCEEEEE--eCCCCeEEEEEE
Q 045735 297 FTIGPFIEAYNPLGLWKNGEIFLES--SDGQLLLY--DPNAQEMRDLGL 341 (378)
Q Consensus 297 ~~i~~~~~~~~~~~~~~~g~ill~~--~~~~~~~y--d~~t~~~~~v~~ 341 (378)
..+.-....-+-+.+.++|+.++.. .++.+.+| |.+|++++.+..
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 5454322234556677788877763 45667766 567889988864
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.15 E-value=0.29 Score=46.13 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHH
Q 045735 11 NADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPR 49 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~ 49 (378)
.-.||.|++..||+-|..+++.|++.+|+.|+.+..|..
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 347999999999999999999999999999999986644
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.84 E-value=27 Score=32.67 Aligned_cols=116 Identities=12% Similarity=0.201 Sum_probs=70.6
Q ss_pred CceEEEEeeecCCccEEEEEECCCce--e---eeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC--CeeE
Q 045735 222 NGVCYWLAREEGENHVIISFDLSDEV--I---QEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE--RCWI 294 (378)
Q Consensus 222 ~G~lywl~~~~~~~~~il~fD~~~e~--~---~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~--~~W~ 294 (378)
+|...|....+.. .|..|++..+. + ..+.+|...+.++.. ..-+|+...+.. +....+.++.++. ..+.
T Consensus 154 dg~~v~v~dlG~D--~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~-f~pdg~~~Yv~~-e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 154 DGRFVYVPDLGAD--RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA-FSPDGKYAYVVN-ELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp TSSEEEEEETTTT--EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE-E-TTSSEEEEEE-TTTTEEEEEEEETTTTEEE
T ss_pred CCCEEEEEecCCC--EEEEEEEeCCCceEEEeeccccccCCCCcEEE-EcCCcCEEEEec-CCCCcEEEEeecccCCcee
Confidence 4666666554433 78888887655 4 335666665433211 122566554444 4688999999984 7787
Q ss_pred EEEEEcCCCc------ceeceEEEECCeEEEE--eeCCEEEEEeC--CCCeEEEEEE
Q 045735 295 KQFTIGPFIE------AYNPLGLWKNGEIFLE--SSDGQLLLYDP--NAQEMRDLGL 341 (378)
Q Consensus 295 ~~~~i~~~~~------~~~~~~~~~~g~ill~--~~~~~~~~yd~--~t~~~~~v~~ 341 (378)
...++...+. ...-+.+.++|+.++. +..+.+.+|++ ++++++.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 7777774321 1233556678887665 34567888987 5678887765
No 51
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.26 E-value=29 Score=29.99 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=73.4
Q ss_pred eEEEEEcCCC--CcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCcee-eeeCCCCCCCCCcccE
Q 045735 188 HIAVYNLSTD--SWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVI-QEIESPCTPELTHGPL 264 (378)
Q Consensus 188 ~~~vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~l 264 (378)
.+..++..++ -|+..-.. ..... ....+..+|.+|-..... .|.++|..+++. -...+|..... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~--~~~~~--~~~~~~~~~~v~~~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~---~~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP--GIGGP--VATAVPDGGRVYVASGDG----NLYALDAKTGKVLWRFDLPGPISG---AP 72 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS--SCSSE--EETEEEETTEEEEEETTS----EEEEEETTTSEEEEEEECSSCGGS---GE
T ss_pred EEEEEECCCCCEEEEEECCC--CCCCc--cceEEEeCCEEEEEcCCC----EEEEEECCCCCEEEEeeccccccc---ee
Confidence 4566776555 47763210 11100 002455788888774333 899999966543 23344444322 23
Q ss_pred EEECCeEEEEEecCCCCEEEEEEEcC----CeeEE-EEEEcCCCcceeceE-EEECCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 265 GLYDNSLSLIALDEIKKCYQLWVLKE----RCWIK-QFTIGPFIEAYNPLG-LWKNGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 265 ~~~~g~L~~~~~~~~~~~~~IW~L~~----~~W~~-~~~i~~~~~~~~~~~-~~~~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
...++.+++... .. .|+.++- ..|.. ...-+... ...+.. ...++.+++....+.++.+|+++++...
T Consensus 73 ~~~~~~v~v~~~---~~--~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 73 VVDGGRVYVGTS---DG--SLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEETTEEEEEET---TS--EEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eecccccccccc---ee--eeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 566788876553 22 6666663 56884 33322222 222222 2225556666667899999999998744
Q ss_pred E
Q 045735 339 L 339 (378)
Q Consensus 339 v 339 (378)
-
T Consensus 147 ~ 147 (238)
T PF13360_consen 147 K 147 (238)
T ss_dssp E
T ss_pred E
Confidence 3
No 52
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=81.21 E-value=5 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=28.9
Q ss_pred CceEECceEEEEeee--cC-C-c-cEEEEEECCCceeeeeCC
Q 045735 217 DSTYWNGVCYWLARE--EG-E-N-HVIISFDLSDEVIQEIES 253 (378)
Q Consensus 217 ~~v~~~G~lywl~~~--~~-~-~-~~il~fD~~~e~~~~i~~ 253 (378)
.++.++|.+|-+... .. . . ..+-.||+++.+|..++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 568889999998876 11 1 1 579999999999998754
No 53
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=80.95 E-value=38 Score=29.74 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=103.7
Q ss_pred ecccceEEEEe--CCceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccce
Q 045735 110 GPYEGIFCLMN--GNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFS 187 (378)
Q Consensus 110 ~s~~GLll~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 187 (378)
...+|-|++.+ ...+ +.++|.+++...+..+. ..++.++...+ +++... ..
T Consensus 8 d~~~g~l~~~D~~~~~i-~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g--~l~v~~------------~~ 60 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRI-YRVDPDTGEVEVIDLPG------------PNGMAFDRPDG--RLYVAD------------SG 60 (246)
T ss_dssp ETTTTEEEEEETTTTEE-EEEETTTTEEEEEESSS------------EEEEEEECTTS--EEEEEE------------TT
T ss_pred ECCCCEEEEEEcCCCEE-EEEECCCCeEEEEecCC------------CceEEEEccCC--EEEEEE------------cC
Confidence 44467777776 3466 99999998876533222 24666663222 222221 23
Q ss_pred eEEEEEcCCCCcccccCCCCCC-CccccCCCceEECceEEEEeeecCCc-----cEEEEEECCCceeeee----CCCCCC
Q 045735 188 HIAVYNLSTDSWRGFRGFKLGR-DYVCGRIDSTYWNGVCYWLAREEGEN-----HVIISFDLSDEVIQEI----ESPCTP 257 (378)
Q Consensus 188 ~~~vyss~~~~W~~~~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~~-----~~il~fD~~~e~~~~i----~~P~~~ 257 (378)
...+++..++.++.+...+..- +....+.-.+--+|.+|......... -.|..++.. ++...+ ..|..
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG- 138 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG- 138 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE-
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc-
Confidence 3466688888887765421111 11111113344478977766543210 269999999 544433 22211
Q ss_pred CCCcccEEEECCe-EEEEEecCCCCEEEEEEEcC--CeeEEEEEE-cCCCcceec--eEEEECCeEEEEe-eCCEEEEEe
Q 045735 258 ELTHGPLGLYDNS-LSLIALDEIKKCYQLWVLKE--RCWIKQFTI-GPFIEAYNP--LGLWKNGEIFLES-SDGQLLLYD 330 (378)
Q Consensus 258 ~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~L~~--~~W~~~~~i-~~~~~~~~~--~~~~~~g~ill~~-~~~~~~~yd 330 (378)
....-+|+ |.+... ....+..+-++. ..+..+..+ ........| +++..+|.|++.. ..+++..||
T Consensus 139 -----i~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 139 -----IAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp -----EEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred -----eEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 12233565 444332 444544444443 335554443 222222234 5566689988864 577999999
Q ss_pred CCCCeEEEEEEe
Q 045735 331 PNAQEMRDLGLR 342 (378)
Q Consensus 331 ~~t~~~~~v~~~ 342 (378)
++.+..+.|...
T Consensus 212 p~G~~~~~i~~p 223 (246)
T PF08450_consen 212 PDGKLLREIELP 223 (246)
T ss_dssp TTSCEEEEEE-S
T ss_pred CCccEEEEEcCC
Confidence 997777778775
No 54
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.71 E-value=50 Score=30.90 Aligned_cols=172 Identities=18% Similarity=0.244 Sum_probs=95.0
Q ss_pred ceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECc-eEEEEeeec-----------------------------C--
Q 045735 186 FSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNG-VCYWLAREE-----------------------------G-- 233 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~-----------------------------~-- 233 (378)
...+..|++.+++|...+.. .|.......++..+| .+|....-. +
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~---sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTR---SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeeEEecCCCChhheeccc---cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 45678899999999999863 343333335555555 677765321 0
Q ss_pred -Cc----cEEEEEECCCceeeeeC-CCCCCCCCcccEEEECCeEEEEEe--cCCCCEEEEEEEcC----CeeEEEEEEcC
Q 045735 234 -EN----HVIISFDLSDEVIQEIE-SPCTPELTHGPLGLYDNSLSLIAL--DEIKKCYQLWVLKE----RCWIKQFTIGP 301 (378)
Q Consensus 234 -~~----~~il~fD~~~e~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~--~~~~~~~~IW~L~~----~~W~~~~~i~~ 301 (378)
.+ ..+++||+.+++|+..- .|.-.... ...+.-+++|.++.- ...-++-.+|+.+- .+|.+.-..++
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 00 35899999999999874 56543322 233344566777632 22334555555433 78998766543
Q ss_pred CCc--ceeceEEE---ECCeEEEE-------------------------eeCCEEEEEeCCCCeEEEEEEecee--E-EE
Q 045735 302 FIE--AYNPLGLW---KNGEIFLE-------------------------SSDGQLLLYDPNAQEMRDLGLRGLW--F-YV 348 (378)
Q Consensus 302 ~~~--~~~~~~~~---~~g~ill~-------------------------~~~~~~~~yd~~t~~~~~v~~~~~~--~-~~ 348 (378)
... -+...+.. .++.+++. ....+++.+| ++.|+.++.-... + -.
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s 345 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVS 345 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEE
Confidence 221 11111111 13444332 1123577777 7888877642222 2 24
Q ss_pred EEeeecccccccccc
Q 045735 349 HCFRESLLSIKREGK 363 (378)
Q Consensus 349 ~~y~~sl~~~~~~~~ 363 (378)
..|-..++.++.+..
T Consensus 346 ~~~nn~vl~IGGE~~ 360 (381)
T COG3055 346 LSYNNKVLLIGGETS 360 (381)
T ss_pred EecCCcEEEEccccC
Confidence 466666666655443
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=80.65 E-value=46 Score=31.26 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=66.9
Q ss_pred cceEEEEe-CCceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEE
Q 045735 113 EGIFCLMN-GNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAV 191 (378)
Q Consensus 113 ~GLll~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 191 (378)
+.-|+..+ .... +|+++.|+....+|.+.... .....+..| =++..+................+|+
T Consensus 76 gskIv~~d~~~~t-~vyDt~t~av~~~P~l~~pk-----~~pisv~VG-------~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 76 GSKIVAVDQSGRT-LVYDTDTRAVATGPRLHSPK-----RCPISVSVG-------DKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred CCeEEEEcCCCCe-EEEECCCCeEeccCCCCCCC-----cceEEEEeC-------CeEEEeeccCccccccCccceeEEE
Confidence 33344443 3467 99999999999999876421 122222222 2244443221111000000014455
Q ss_pred E--E--------cCCCCcccccCCCCCCCccc------cCCCceEECceEEEEeeecCCccEEEEEECCCceeeee---C
Q 045735 192 Y--N--------LSTDSWRGFRGFKLGRDYVC------GRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEI---E 252 (378)
Q Consensus 192 y--s--------s~~~~W~~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i---~ 252 (378)
+ + ..+-+|+.+.. +++.... ..+.+|+ +|.--|+...... ..-.+||..+.+|+.. .
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~--PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~-~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPP--PPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR-WGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred eccccccccccCCCcceEEcCCC--CCccccCCcccceEEEEEEe-cCCeEEEEecCCc-eEEEEEEcCCcceeecccee
Confidence 4 3 12336777653 1233322 1124566 8988888655310 1589999999999887 5
Q ss_pred CCCC
Q 045735 253 SPCT 256 (378)
Q Consensus 253 ~P~~ 256 (378)
+|..
T Consensus 219 LPF~ 222 (342)
T PF07893_consen 219 LPFH 222 (342)
T ss_pred cCcC
Confidence 6765
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=76.99 E-value=64 Score=30.76 Aligned_cols=107 Identities=12% Similarity=0.179 Sum_probs=62.1
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCc--eeeeeCCCCCCCC--------CcccEEEECCeEEEEEecCCCCEEEEE
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDE--VIQEIESPCTPEL--------THGPLGLYDNSLSLIALDEIKKCYQLW 286 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~--------~~~~l~~~~g~L~~~~~~~~~~~~~IW 286 (378)
.++..+|.+|.....+ .+.+||..++ .|+. +++..... ....+...+|++.+... .. .+.
T Consensus 64 sPvv~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g--~l~ 133 (394)
T PRK11138 64 HPAVAYNKVYAADRAG----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KG--QVY 133 (394)
T ss_pred ccEEECCEEEEECCCC----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcC---CC--EEE
Confidence 5688899999887654 7999999754 4442 33321100 01224455677665322 22 244
Q ss_pred EEcC----CeeEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 287 VLKE----RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 287 ~L~~----~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
.++. ..|..... ......|+. .++.+++...++.++.+|.+|++..+
T Consensus 134 ald~~tG~~~W~~~~~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 134 ALNAEDGEVAWQTKVA---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEECCCCCCcccccCC---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 4443 56765421 111223433 26777777777889999999988654
No 57
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.85 E-value=47 Score=31.42 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=77.3
Q ss_pred ceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCce--eeeeCCCCCCCCCccc
Q 045735 186 FSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV--IQEIESPCTPELTHGP 263 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~ 263 (378)
.........++..|...... .-...+....+++.+|.+|...... .|.+||..+.+ |+.-... ........
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~--~~~~~~~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~-~~~~~~~~ 106 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGS--GGGGIYAGPAPADGDGTVYVGTRDG----NIFALNPDTGLVKWSYPLLG-AVAQLSGP 106 (370)
T ss_pred ceEEEcccCcceeeeeeccc--CccceEeccccEeeCCeEEEecCCC----cEEEEeCCCCcEEecccCcC-cceeccCc
Confidence 34445555567778643110 1111111112599999999985554 79999998876 6544333 11111123
Q ss_pred EEEECCeEEEEEecCCCCEEEEEEEcC----CeeEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeEEEE
Q 045735 264 LGLYDNSLSLIALDEIKKCYQLWVLKE----RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 264 l~~~~g~L~~~~~~~~~~~~~IW~L~~----~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~~~v 339 (378)
+..-+|++.+-... . .++.|+. ..|.....- . ..+..+. +..++.+++...++.++..|.+|++.++.
T Consensus 107 ~~~~~G~i~~g~~~--g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~-v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 107 ILGSDGKIYVGSWD--G---KLYALDASTGTLVWSRNVGG-S-PYYASPP-VVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred eEEeCCeEEEeccc--c---eEEEEECCCCcEEEEEecCC-C-eEEecCc-EEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 33337886653331 1 7777776 456655432 1 1111221 22366666666678899999999887554
No 58
>smart00612 Kelch Kelch domain.
Probab=76.68 E-value=3.1 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.615 Sum_probs=16.3
Q ss_pred ceeEEEEEcCCCCcccccC
Q 045735 186 FSHIAVYNLSTDSWRGFRG 204 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~ 204 (378)
...+++|+.+++.|+....
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 5678999999999998764
No 59
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.80 E-value=48 Score=30.40 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=61.8
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCce-eeeeCCCCCCCCCcccEEEECCeE---EEEEecCCCCEEEEEEEcCCe
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDEV-IQEIESPCTPELTHGPLGLYDNSL---SLIALDEIKKCYQLWVLKERC 292 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~~~~~l~~~~g~L---~~~~~~~~~~~~~IW~L~~~~ 292 (378)
.+|.++|..---...++ .|-.||+.+.. ...+--+... ..-..+.+.+ -++.. .++..+.||..+ .
T Consensus 47 tavAVs~~~~aSGssDe---tI~IYDm~k~~qlg~ll~Hags----itaL~F~~~~S~shLlS~-sdDG~i~iw~~~--~ 116 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSDE---TIHIYDMRKRKQLGILLSHAGS----ITALKFYPPLSKSHLLSG-SDDGHIIIWRVG--S 116 (362)
T ss_pred eEEEecceeEeccCCCC---cEEEEeccchhhhcceeccccc----eEEEEecCCcchhheeee-cCCCcEEEEEcC--C
Confidence 67888887444333443 79999997643 3333323111 1111222222 23332 367889999776 5
Q ss_pred eEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeE
Q 045735 293 WIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEM 336 (378)
Q Consensus 293 W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~ 336 (378)
|..+..+.....-..-+++++.|++-+. .+|..+-.+|+-+++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 9888888765433444666666666554 3445555566555543
No 60
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.76 E-value=11 Score=21.26 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=20.1
Q ss_pred CCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 314 NGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 314 ~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
+|.+++...++.++.+|.++++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 5667777778899999999988654
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=74.69 E-value=85 Score=30.36 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=65.2
Q ss_pred ceEECce-EEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCcccEE--EECCeEEEEEecCCCCEEEEEEEcCCeeE
Q 045735 218 STYWNGV-CYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLG--LYDNSLSLIALDEIKKCYQLWVLKERCWI 294 (378)
Q Consensus 218 ~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~--~~~g~L~~~~~~~~~~~~~IW~L~~~~W~ 294 (378)
..+-+|. .-+...+. .++.+||+.+.+...+..|........... .-.+...++. +....|.+=..+..+|.
T Consensus 264 ~f~p~G~~~i~~s~rr---ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~--G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRR---KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA--GNNGHIHLLHAKTKELI 338 (514)
T ss_pred eecCCCceEEEecccc---eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc--ccCceEEeehhhhhhhh
Confidence 3444666 33333333 289999999999999988776553211111 1123322221 13333333333335666
Q ss_pred EEEEEcCCCcceeceEEEECCeEEE-EeeCCEEEEEeCCCCeEEEE
Q 045735 295 KQFTIGPFIEAYNPLGLWKNGEIFL-ESSDGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 295 ~~~~i~~~~~~~~~~~~~~~g~ill-~~~~~~~~~yd~~t~~~~~v 339 (378)
.-+.|. ....-+.+.++|+.++ +.++++++.+|++++...+.
T Consensus 339 ~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 339 TSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred heeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 555553 3445566667777655 46678999999999876544
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.09 E-value=3.9 Score=25.88 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=13.9
Q ss_pred ceEEEEeccccceecCCCCc
Q 045735 123 KYISLWNLATQELRRLPKCR 142 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~ 142 (378)
.+ +++|+.|++|.++|++|
T Consensus 30 d~-~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DL-WIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -E-EEEETTTTEEEE--SS-
T ss_pred CE-EEEECCCCEEEECCCCC
Confidence 56 99999999999998776
No 63
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=73.14 E-value=65 Score=28.53 Aligned_cols=126 Identities=20% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCCccccCCCceEECceEEEEeeecCCccEEEEEECCCce-eeeeCCCCCCCC----------CcccEEEECCeEEE-EE
Q 045735 208 GRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEV-IQEIESPCTPEL----------THGPLGLYDNSLSL-IA 275 (378)
Q Consensus 208 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~----------~~~~l~~~~g~L~~-~~ 275 (378)
.+|..+.+..-|..||.+|....... .|+-||+.++. .....+|...-. ....+++-+.-|.+ ++
T Consensus 63 ~lp~~~~gTg~VVynGs~yynk~~t~---~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYa 139 (249)
T KOG3545|consen 63 RLPYSWDGTGHVVYNGSLYYNKAGTR---NIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYA 139 (249)
T ss_pred eCCCCccccceEEEcceEEeeccCCc---ceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEec
Confidence 34544544477999999999875543 79999999853 333445543211 11445554444544 55
Q ss_pred ecCCCCEEEEEEEcC------CeeEEEEEEcCCCcceeceEEEECCeEEEEe----eCCEE-EEEeCCCCeEEEEEE
Q 045735 276 LDEIKKCYQLWVLKE------RCWIKQFTIGPFIEAYNPLGLWKNGEIFLES----SDGQL-LLYDPNAQEMRDLGL 341 (378)
Q Consensus 276 ~~~~~~~~~IW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~----~~~~~-~~yd~~t~~~~~v~~ 341 (378)
..+....+.|-.|+. ..|.-... . ..... ++.-.|.++... .+..+ ++||..+++-+.+.+
T Consensus 140 t~~~~g~iv~skLdp~tl~~e~tW~T~~~--k-~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 140 TPENAGTIVLSKLDPETLEVERTWNTTLP--K-RSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred ccccCCcEEeeccCHHHhheeeeeccccC--C-CCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 555677888888876 45533221 1 11111 111245555442 22333 799999998877765
No 64
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=73.10 E-value=8.8 Score=24.16 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=21.3
Q ss_pred CceEE-CceEEEEeeecCC-c--cEEEEEECCCceeeee
Q 045735 217 DSTYW-NGVCYWLAREEGE-N--HVIISFDLSDEVIQEI 251 (378)
Q Consensus 217 ~~v~~-~G~lywl~~~~~~-~--~~il~fD~~~e~~~~i 251 (378)
.++.+ ++.+|........ . ..+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34555 5777776654432 1 4789999999999988
No 65
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=72.83 E-value=11 Score=28.85 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=29.8
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEE
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLIL 173 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 173 (378)
.+ .+.||.|+.|... .+. ......+.+.+++..+.|+|+...
T Consensus 10 ~V-m~~d~~tk~W~P~--~~~------~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SV-MVYDDSNKKWVPA--GGG------SQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred Ee-eEEcCCCCcEEcC--CCC------CCCcceEEEEEcCCCCEEEEEEee
Confidence 45 8999999986543 331 112456778888988999999864
No 66
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.82 E-value=72 Score=28.69 Aligned_cols=139 Identities=18% Similarity=0.125 Sum_probs=75.1
Q ss_pred ccceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCCc-eeeeeCCCCCCCCCcc
Q 045735 184 YDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDE-VIQEIESPCTPELTHG 262 (378)
Q Consensus 184 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e-~~~~i~~P~~~~~~~~ 262 (378)
.....+..|+..++.=.... .+|........+.+++.+|-++.... ..+.||..+- ....++.|. +. .
T Consensus 65 yG~S~l~~~d~~tg~~~~~~----~l~~~~FgEGit~~~d~l~qLTWk~~---~~f~yd~~tl~~~~~~~y~~--EG--W 133 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSV----PLPPRYFGEGITILGDKLYQLTWKEG---TGFVYDPNTLKKIGTFPYPG--EG--W 133 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEE----E-TTT--EEEEEEETTEEEEEESSSS---EEEEEETTTTEEEEEEE-SS--S----
T ss_pred CCcEEEEEEECCCCcEEEEE----ECCccccceeEEEECCEEEEEEecCC---eEEEEccccceEEEEEecCC--cc--e
Confidence 35788889999988643332 23332222255778999999999886 7999999863 334555553 22 3
Q ss_pred cEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEE-----EECCeEEEEe-eCCEEEEEeCCCCeE
Q 045735 263 PLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGL-----WKNGEIFLES-SDGQLLLYDPNAQEM 336 (378)
Q Consensus 263 ~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~-----~~~g~ill~~-~~~~~~~yd~~t~~~ 336 (378)
.|..-+.+|.+.. .+=.|+.++-.....+.+|.... -..|+.. +-+|.|+-.. ....++..|++|+++
T Consensus 134 GLt~dg~~Li~SD-----GS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 134 GLTSDGKRLIMSD-----GSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EEEECSSCEEEE------SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BE
T ss_pred EEEcCCCEEEEEC-----CccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeE
Confidence 4554444555422 23345555543344444444211 1122111 1177776542 345799999999988
Q ss_pred EEE
Q 045735 337 RDL 339 (378)
Q Consensus 337 ~~v 339 (378)
...
T Consensus 208 ~~~ 210 (264)
T PF05096_consen 208 VGW 210 (264)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 67
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.40 E-value=7.8 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.9
Q ss_pred CeEEEEeeCCEEEEEeCCCCeEEEEEE
Q 045735 315 GEIFLESSDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 315 g~ill~~~~~~~~~yd~~t~~~~~v~~ 341 (378)
|.+++...++.++.+|.+|++..+-..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeee
Confidence 456666778899999999999776543
No 68
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=72.07 E-value=3.4 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=23.0
Q ss_pred eecccceEEEEeC--------CceEEEEeccccceecCCCCc
Q 045735 109 VGPYEGIFCLMNG--------NKYISLWNLATQELRRLPKCR 142 (378)
Q Consensus 109 ~~s~~GLll~~~~--------~~~~~V~NP~T~~~~~LP~~~ 142 (378)
+.+.+|-|.+..+ ..+ .++||.|++|..+|+++
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v-~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSV-EVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEE-EEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeecccCceeeeE-EEEeCCCCEEEEcCCCC
Confidence 4455555544432 256 99999999999998764
No 69
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=71.00 E-value=93 Score=29.21 Aligned_cols=84 Identities=11% Similarity=0.203 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCc-cEEEEEECCCcee-----------eeeCCCC
Q 045735 188 HIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN-HVIISFDLSDEVI-----------QEIESPC 255 (378)
Q Consensus 188 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~il~fD~~~e~~-----------~~i~~P~ 255 (378)
....|+-++..|+..+.. .+|+. .++.|+..---|+.-..... ..|-+.|+.+..- ..+..|.
T Consensus 200 GTysfDt~~~~W~~~GdW--~LPF~---G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW--MLPFH---GQAEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeeccce--ecCcC---CccEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccccccc
Confidence 567777788899999764 45542 26666665556665443322 3789999976322 2233333
Q ss_pred CCCCCcccEEEE-CCeEEEEEe
Q 045735 256 TPELTHGPLGLY-DNSLSLIAL 276 (378)
Q Consensus 256 ~~~~~~~~l~~~-~g~L~~~~~ 276 (378)
........|+.+ +|+.|++..
T Consensus 275 ~~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 275 EWRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccCceEEECCCCCEEEEEE
Confidence 322223566655 578888654
No 70
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=70.98 E-value=76 Score=28.20 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred ceeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEECCC----ceeeeeCCCCCCCCCc
Q 045735 186 FSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSD----EVIQEIESPCTPELTH 261 (378)
Q Consensus 186 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~----e~~~~i~~P~~~~~~~ 261 (378)
.....+|+..++++|.... .-...|.. ..+.-||.+.-.....+....+..|+..+ ..|... |......+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v---~td~FCSg-g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~R 118 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV---QTDTFCSG-GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQSGR 118 (243)
T ss_pred eEEEEEEecCCCcEEeccC---CCCCcccC-cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccCCC
Confidence 4556788999998887753 12222322 44556787664333222224688888865 345433 22221111
Q ss_pred --ccEE-EECCeEEEEEecCCCCEEEEEEEcC-----CeeEEEEEEc-CCCcceec-eEEEECCeEEEEeeCCEEEEEeC
Q 045735 262 --GPLG-LYDNSLSLIALDEIKKCYQLWVLKE-----RCWIKQFTIG-PFIEAYNP-LGLWKNGEIFLESSDGQLLLYDP 331 (378)
Q Consensus 262 --~~l~-~~~g~L~~~~~~~~~~~~~IW~L~~-----~~W~~~~~i~-~~~~~~~~-~~~~~~g~ill~~~~~~~~~yd~ 331 (378)
.... .-+|++.++... .....+.|=-+. ..|....... .......| +.+-++|+||+.... +-.+||.
T Consensus 119 WYpT~~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~ 196 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDY 196 (243)
T ss_pred ccccceECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeC
Confidence 2222 337887776542 344455553221 1121111111 11223444 345579999887654 4778899
Q ss_pred CCCeE-EEEEE-eceeEEEEEeeeccccccc
Q 045735 332 NAQEM-RDLGL-RGLWFYVHCFRESLLSIKR 360 (378)
Q Consensus 332 ~t~~~-~~v~~-~~~~~~~~~y~~sl~~~~~ 360 (378)
+++++ +++.. .+. .+..+...+-+-++.
T Consensus 197 ~~n~v~~~lP~lPg~-~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 197 KTNTVVRTLPDLPGG-PRNYPASGSSVMLPL 226 (243)
T ss_pred CCCeEEeeCCCCCCC-ceecCCCcceEEecC
Confidence 99976 45432 222 666677777665555
No 71
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.91 E-value=88 Score=28.90 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=62.2
Q ss_pred CceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC-CeeEEEEEEc
Q 045735 222 NGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE-RCWIKQFTIG 300 (378)
Q Consensus 222 ~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~-~~W~~~~~i~ 300 (378)
.+.+||....+. .|+.+|..+++-+.+..|..... ..+...+|.|..... .+.++..+. ..|.......
T Consensus 36 ~~~L~w~DI~~~---~i~r~~~~~g~~~~~~~p~~~~~--~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 36 RGALLWVDILGG---RIHRLDPETGKKRVFPSPGGFSS--GALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CCEEEEEeCCCC---eEEEecCCcCceEEEECCCCccc--ceeecCCCeEEEEcc-----ccEEEeccCCceeEEecccc
Confidence 457899887776 89999999999999998887532 233344555554222 233333333 4454444433
Q ss_pred CCCcceec--eEEEECCeEEEEee------------CCEEEEEeCCCCeEEEE
Q 045735 301 PFIEAYNP--LGLWKNGEIFLESS------------DGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 301 ~~~~~~~~--~~~~~~g~ill~~~------------~~~~~~yd~~t~~~~~v 339 (378)
......++ ..+..+|.+++-.. .+.++.||+.+++.+-+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 22111222 44555677776522 23589999855554433
No 72
>PLN02772 guanylate kinase
Probab=69.98 E-value=26 Score=33.42 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=49.8
Q ss_pred CceEECceEEEEeeecCC--c-cEEEEEECCCceeeeeCC---CCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC
Q 045735 217 DSTYWNGVCYWLAREEGE--N-HVIISFDLSDEVIQEIES---PCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE 290 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~--~-~~il~fD~~~e~~~~i~~---P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~ 290 (378)
.+|.++..+|.+..+.+. - ..+.+||..+.+|..-.+ |+.+...+..++.-+++|-++..+ ....=+||.|+-
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~-~~~~~~~w~l~~ 107 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG-SAPDDSIWFLEV 107 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC-CCCccceEEEEc
Confidence 778889999988865542 1 579999999999986432 333333333444557888887542 444678999975
No 73
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=67.56 E-value=76 Score=29.68 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=66.1
Q ss_pred CceEEC--ceEEEEeeecCCccEEEEEECCCceeeee---CCCCCC---CCCc---ccEEEE---CCeEEEEEe-----c
Q 045735 217 DSTYWN--GVCYWLAREEGENHVIISFDLSDEVIQEI---ESPCTP---ELTH---GPLGLY---DNSLSLIAL-----D 277 (378)
Q Consensus 217 ~~v~~~--G~lywl~~~~~~~~~il~fD~~~e~~~~i---~~P~~~---~~~~---~~l~~~---~g~L~~~~~-----~ 277 (378)
.+++.+ |.+||.+..+ .|...|++.+.-... .+-... ..+. .++..+ .|+|.+... .
T Consensus 188 ~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp --EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred ccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 445543 6899988877 899999988754433 111111 1111 444443 678887421 1
Q ss_pred CCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCe-EEEE-e-eCCEEEEEeCCCCeEEE
Q 045735 278 EIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGE-IFLE-S-SDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 278 ~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~-ill~-~-~~~~~~~yd~~t~~~~~ 338 (378)
.+...=+||+++-..=.++.+|+... -...+++..+++ +|+. . .++.+.+||..|++..+
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 35678899999884445566665322 122456666655 4443 3 45789999999987543
No 74
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=64.73 E-value=1.4e+02 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.0
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCC--ceeee
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSD--EVIQE 250 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~--e~~~~ 250 (378)
.++.++|.+|..+..+ .|.++|..| +.|+.
T Consensus 189 TPlvvgg~lYv~t~~~----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHN----KVIALDAATGKEKWKF 220 (764)
T ss_pred CCEEECCEEEEECCCC----eEEEEECCCCcEEEEE
Confidence 7899999999987654 899999975 45654
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=64.04 E-value=1e+02 Score=27.01 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=66.3
Q ss_pred CceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCcccEEE--ECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEE
Q 045735 222 NGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGL--YDNSLSLIALDEIKKCYQLWVLKERCWIKQFTI 299 (378)
Q Consensus 222 ~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i 299 (378)
+|.+||...... .|..+|+.+++...+.+|.. ..+.. -+|+|.+... ..+.+.-++..++......
T Consensus 11 ~g~l~~~D~~~~---~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 11 DGRLYWVDIPGG---RIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TTEEEEEETTTT---EEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEcCCC---EEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeec
Confidence 699999987665 89999999999998888772 22222 3567665432 2233332222777777776
Q ss_pred cCCC-cceec--eEEEECCeEEEEeeC---------CEEEEEeCCCCeEEEEE
Q 045735 300 GPFI-EAYNP--LGLWKNGEIFLESSD---------GQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 300 ~~~~-~~~~~--~~~~~~g~ill~~~~---------~~~~~yd~~t~~~~~v~ 340 (378)
.... ...+| +.+.++|.+++.... ++++.++.. ++.+.+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 3222 23444 566678888876321 468999999 6666553
No 76
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=62.21 E-value=1.4e+02 Score=28.14 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=68.1
Q ss_pred eEECceEEEEeeecCCccEEEEEECCCc------eeeeeCCCCCC---CCCcccEEEE---CCeEEEEEecC-----CCC
Q 045735 219 TYWNGVCYWLAREEGENHVIISFDLSDE------VIQEIESPCTP---ELTHGPLGLY---DNSLSLIALDE-----IKK 281 (378)
Q Consensus 219 v~~~G~lywl~~~~~~~~~il~fD~~~e------~~~~i~~P~~~---~~~~~~l~~~---~g~L~~~~~~~-----~~~ 281 (378)
.-.+|..+|....+ .|..+|+++. .|..+..-... .....+...+ +++|++..... ...
T Consensus 202 ~~~dg~~~~vs~eG----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 202 SNKSGRLVWPTYTG----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred EcCCCcEEEEecCC----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 33379999999884 7999997543 23333221111 1111222322 45666633210 122
Q ss_pred EEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCe-EEEEe--eCCEEEEEeCCCCe-EEEE
Q 045735 282 CYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGE-IFLES--SDGQLLLYDPNAQE-MRDL 339 (378)
Q Consensus 282 ~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~-ill~~--~~~~~~~yd~~t~~-~~~v 339 (378)
.=+||+++-.++..+.+|.... ....+.+..+|+ .++.. .++.+.++|.++++ ++.+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 3489999888888888886433 233466777888 66653 34569999999975 4445
No 77
>PTZ00420 coronin; Provisional
Probab=59.89 E-value=2e+02 Score=29.15 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=59.5
Q ss_pred CceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCccc---EEE--ECCeEEEE-Eec-CCCCEEEEEEEcC-Cee
Q 045735 222 NGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGP---LGL--YDNSLSLI-ALD-EIKKCYQLWVLKE-RCW 293 (378)
Q Consensus 222 ~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~---l~~--~~g~L~~~-~~~-~~~~~~~IW~L~~-~~W 293 (378)
+|.+.-....+. .|..+|+.+++... .++.+....... +.. .++...+. ..+ ...+.+.||-+.. ..=
T Consensus 178 dG~lLat~s~D~---~IrIwD~Rsg~~i~-tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 178 KGNLLSGTCVGK---HMHIIDPRKQEIAS-SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred CCCEEEEEecCC---EEEEEECCCCcEEE-EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 566554333332 79999998765422 122221111111 111 23343333 322 1235899999886 332
Q ss_pred EEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeEEEEE
Q 045735 294 IKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 294 ~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~~~v~ 340 (378)
.....++.......|+.-..+|.+|+. .+++.+.+|++.++.+..+.
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 333333322222233333335777666 46888999999988776664
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=59.40 E-value=2e+02 Score=28.89 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=60.7
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCc--eeeee-CCCCCCCC------CcccEEEECCeEEEEEecCCCCEEEEEE
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDE--VIQEI-ESPCTPEL------THGPLGLYDNSLSLIALDEIKKCYQLWV 287 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~i-~~P~~~~~------~~~~l~~~~g~L~~~~~~~~~~~~~IW~ 287 (378)
.++..+|.+|...... .|.++|..++ .|+.- ..|..... ....+...+|++.+... +. .|..
T Consensus 64 tPvv~~g~vyv~s~~g----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--dg---~l~A 134 (527)
T TIGR03075 64 QPLVVDGVMYVTTSYS----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--DA---RLVA 134 (527)
T ss_pred CCEEECCEEEEECCCC----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--CC---EEEE
Confidence 6788899999876554 7999999764 55542 23322111 00123344666655332 11 3555
Q ss_pred EcC----CeeEEEEEEcCCC--cc-eeceEEEECCeEEEEee------CCEEEEEeCCCCeEEEE
Q 045735 288 LKE----RCWIKQFTIGPFI--EA-YNPLGLWKNGEIFLESS------DGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 288 L~~----~~W~~~~~i~~~~--~~-~~~~~~~~~g~ill~~~------~~~~~~yd~~t~~~~~v 339 (378)
|+- ..|..... ++.. .+ ..|+.. ++.|++... ++.++.||.+|++...-
T Consensus 135 LDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 135 LDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 544 45765431 1111 11 233332 566666432 46899999999986543
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=58.73 E-value=1.6e+02 Score=27.66 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=56.8
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCceee-eeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEc--C--C
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDEVIQ-EIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLK--E--R 291 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~--~--~ 291 (378)
.++..+|.+|.....+ .+.+||..+++-. ..+++.... .....-++.+.+... ... ++.++ . .
T Consensus 60 ~p~v~~~~v~v~~~~g----~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~~~~v~v~~~---~g~--l~ald~~tG~~ 127 (377)
T TIGR03300 60 QPAVAGGKVYAADADG----TVVALDAETGKRLWRVDLDERLS---GGVGADGGLVFVGTE---KGE--VIALDAEDGKE 127 (377)
T ss_pred ceEEECCEEEEECCCC----eEEEEEccCCcEeeeecCCCCcc---cceEEcCCEEEEEcC---CCE--EEEEECCCCcE
Confidence 5677889999877654 7999998765422 234444322 122333555544221 222 33333 2 4
Q ss_pred eeEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeEE
Q 045735 292 CWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMR 337 (378)
Q Consensus 292 ~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~~ 337 (378)
.|.... + ......|.. .++.+++...++.++.+|.++++..
T Consensus 128 ~W~~~~--~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 128 LWRAKL--S-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred eeeecc--C-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee
Confidence 565431 1 111122222 3567777666788999999988754
No 80
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=58.33 E-value=21 Score=27.14 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.3
Q ss_pred ceEEEEecccc-ceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEE
Q 045735 123 KYISLWNLATQ-ELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLIL 173 (378)
Q Consensus 123 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 173 (378)
++ +++||.|+ .|... .+. ...+.+-+|+..+.|+||.+.
T Consensus 12 ~V-~~yd~~tKk~WvPs--~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HV-FQIDPKTKKNWIPA--SKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EE-EEECCCCcceeEeC--CCC---------ceeEEEEecCCCcEEEEEEec
Confidence 56 99999996 77643 221 346788999999999999863
No 81
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=56.92 E-value=6.9 Score=36.14 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=33.0
Q ss_pred ccCCCCcHHHHHHHHhcCCc--------cccchhhccccchhhhhCC
Q 045735 9 ESNADLPADAIIEMLLRLPV--------KSLIRYRSVCKSWYILTKS 47 (378)
Q Consensus 9 ~~~~~LP~Dll~eIL~rLP~--------~sl~r~r~VcK~W~~li~~ 47 (378)
..|+.||.+++.+|+.|.-- ++...+..|||.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 34889999999999999843 4788999999999998654
No 82
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.54 E-value=17 Score=21.78 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.0
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCC
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSD 245 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~ 245 (378)
.+++.+|.+|-....+ .+.+||.+|
T Consensus 16 ~~~v~~g~vyv~~~dg----~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG----NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS----EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC----EEEEEeCCC
Confidence 5688899999887765 899999875
No 83
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=55.39 E-value=1.8e+02 Score=27.27 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=60.1
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCce--eeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC--Ce
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDEV--IQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE--RC 292 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~--~~ 292 (378)
.++..+|.+|.....+ .+.++|..+++ |.. +.+. .......+|++++.. ....+..+-.++ ..
T Consensus 236 ~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~-~~~~-----~~~p~~~~~~vyv~~---~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKR-DASS-----YQGPAVDDNRLYVTD---ADGVVVALDRRSGSEL 302 (377)
T ss_pred ccEEECCEEEEEEcCC----EEEEEECCCCcEEEee-ccCC-----ccCceEeCCEEEEEC---CCCeEEEEECCCCcEE
Confidence 5677789999876654 89999997653 432 2211 122334566666532 233444444433 44
Q ss_pred eEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 293 WIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 293 W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
|.... +. ......|.. .++.+++...++.++.+|.++++...
T Consensus 303 W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 303 WKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred Ecccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 65421 11 111233332 26677777778899999999887653
No 84
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=49.11 E-value=19 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=17.0
Q ss_pred ceEEEEeccccceecCCCCcC
Q 045735 123 KYISLWNLATQELRRLPKCRA 143 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~ 143 (378)
.+ +++||.|++|.+++..|.
T Consensus 20 d~-~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 20 DV-WVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CE-EEEECCCCEEEECCCCCC
Confidence 56 999999999999976654
No 85
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=49.06 E-value=15 Score=32.76 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=31.3
Q ss_pred cCCCCcHHHHHHHHhcCCc-cccchhhccccchhhhhCCHH
Q 045735 10 SNADLPADAIIEMLLRLPV-KSLIRYRSVCKSWYILTKSPR 49 (378)
Q Consensus 10 ~~~~LP~Dll~eIL~rLP~-~sl~r~r~VcK~W~~li~~p~ 49 (378)
+..+||.+++.+||.|||= .+|....-|--.-..++.++.
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 3779999999999999987 888888777655555555544
No 86
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.31 E-value=1.7e+02 Score=31.00 Aligned_cols=71 Identities=15% Similarity=0.330 Sum_probs=45.5
Q ss_pred EEEECCeEEEEEecCCCCEEEEEEEcC-CeeEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCe
Q 045735 264 LGLYDNSLSLIALDEIKKCYQLWVLKE-RCWIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQE 335 (378)
Q Consensus 264 l~~~~g~L~~~~~~~~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~ 335 (378)
-..+.+.|=++....+++.+.+|+|.+ +.|+.--. .-..+...-+-+++.-++++. .++..+-+||+..++
T Consensus 211 waAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc-rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 211 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC-RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eEEecCCcceEEecCCcceeeEEEeccccceeehhh-hcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 344555555555556889999999999 88987422 222222333344555566666 557778899988765
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.17 E-value=3.1e+02 Score=26.57 Aligned_cols=124 Identities=10% Similarity=0.178 Sum_probs=69.8
Q ss_pred ccceeEEEEEcCCCCcccccCCCCCCCccccCC-CceEECceEEEEeeecCCccEEEEEECCC-ceeeeeCCCCCCCCCc
Q 045735 184 YDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRI-DSTYWNGVCYWLAREEGENHVIISFDLSD-EVIQEIESPCTPELTH 261 (378)
Q Consensus 184 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~-~~v~~~G~lywl~~~~~~~~~il~fD~~~-e~~~~i~~P~~~~~~~ 261 (378)
.....+.||+..++. .+. .+|.. ..+ ..+.+.-.=||+....+. ..|..+|+.. +.|..++++...+...
T Consensus 366 t~d~~vkiwdlks~~--~~a----~Fpgh-t~~vk~i~FsENGY~Lat~add-~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVA----KFPGH-TGPVKAISFSENGYWLATAADD-GSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred CCCceEEEEEcCCcc--ccc----cCCCC-CCceeEEEeccCceEEEEEecC-CeEEEEEehhhcccceeecccccccee
Confidence 345566777776665 232 34442 223 667777777888865432 2599999975 6778888887643221
Q ss_pred ccEEEECCe-EEEEEecCCCCEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEECCeEEEEe
Q 045735 262 GPLGLYDNS-LSLIALDEIKKCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWKNGEIFLES 321 (378)
Q Consensus 262 ~~l~~~~g~-L~~~~~~~~~~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~ 321 (378)
..+ ...|+ |++. +..+.|...+. .+|.+............-+.+.+...++...
T Consensus 438 ~~f-D~SGt~L~~~-----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 438 LSF-DQSGTYLGIA-----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred EEE-cCCCCeEEee-----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeec
Confidence 111 11233 3332 55777877776 8899977655333222333344444444443
No 88
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=43.71 E-value=1.4e+02 Score=23.08 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCCEEEEEEEcC-CeeEEEEEEcCCCcceeceEEEECCeEEEEe-eCCEEEEEeCCCCeEEEEEEecee----EEEEEee
Q 045735 279 IKKCYQLWVLKE-RCWIKQFTIGPFIEAYNPLGLWKNGEIFLES-SDGQLLLYDPNAQEMRDLGLRGLW----FYVHCFR 352 (378)
Q Consensus 279 ~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~-~~~~~~~yd~~t~~~~~v~~~~~~----~~~~~y~ 352 (378)
+...+..|.|-+ ..|. .... ....+++.+ ..--++.||..+.++..+...+.. .....|.
T Consensus 28 ~e~~i~gW~L~~~~~~~-----~~~~---------e~E~vlLLTd~alyi~~YD~~~~kv~~~~ri~L~~I~~I~~G~~~ 93 (115)
T PF12456_consen 28 DEEFIGGWLLTEPDHWN-----KTEN---------EEERVLLLTDKALYICKYDFIMEKVSQFQRIPLNDIDKIQIGTFI 93 (115)
T ss_pred CCcEEEEEEEEecCccc-----CCCc---------ccceEEEEecCEEEEEEecCCCccEEEEEEEecccCcEEEEeccC
Confidence 566778888877 6666 1111 123444444 344588999999886655433222 5666676
Q ss_pred eccccccccccccCCCCcceE
Q 045735 353 ESLLSIKREGKLLGGFDIPWH 373 (378)
Q Consensus 353 ~sl~~~~~~~~~~~~~~~~~~ 373 (378)
.|-.++ ..+..-|+++-|.
T Consensus 94 ~s~~s~--~~~~~~g~rI~y~ 112 (115)
T PF12456_consen 94 TSTLSL--DKRKNYGFRIFYD 112 (115)
T ss_pred CCCCcC--CcccCcEEEEEEc
Confidence 666665 6666688887773
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.88 E-value=84 Score=30.02 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=47.6
Q ss_pred ECCeEEEEEecCCCCEEEEEEEcCCeeEEEEE-EcCCCcceec-eEEEE-CCeEEEE-eeCCEEEEEeCCCCeEEEEEE-
Q 045735 267 YDNSLSLIALDEIKKCYQLWVLKERCWIKQFT-IGPFIEAYNP-LGLWK-NGEIFLE-SSDGQLLLYDPNAQEMRDLGL- 341 (378)
Q Consensus 267 ~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~-i~~~~~~~~~-~~~~~-~g~ill~-~~~~~~~~yd~~t~~~~~v~~- 341 (378)
-+|++.++.. ...++.+|-+++ |..+.. .+.....+-+ .+++. +.+++.. .++++++++|.++++.-.+-.
T Consensus 405 ~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 405 KDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred CCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 3789988766 678999999986 222211 1222222222 22332 3455555 568899999999988644322
Q ss_pred eceeEEEEEeee
Q 045735 342 RGLWFYVHCFRE 353 (378)
Q Consensus 342 ~~~~~~~~~y~~ 353 (378)
+.....++.|-|
T Consensus 481 Hs~~vNcVswNP 492 (519)
T KOG0293|consen 481 HSKTVNCVSWNP 492 (519)
T ss_pred CcceeeEEecCC
Confidence 222155666644
No 90
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.21 E-value=2.9e+02 Score=25.81 Aligned_cols=143 Identities=8% Similarity=0.046 Sum_probs=0.0
Q ss_pred eEEEEeeecCCc-cEEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC-CeeEEEEEEcC
Q 045735 224 VCYWLAREEGEN-HVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE-RCWIKQFTIGP 301 (378)
Q Consensus 224 ~lywl~~~~~~~-~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~-~~W~~~~~i~~ 301 (378)
.+|-....++.. -.-..+|..+++++.+.-=...+.....+...+..-.++........+.|.-+++ ++=...-.+..
T Consensus 53 ~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~ 132 (346)
T COG2706 53 HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK 132 (346)
T ss_pred EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee
Q ss_pred CCcc----------eeceEEEECCeEEEE--eeCCEEEEEeCCCCeEEEEEEecee----EEEEEeeecccccccccccc
Q 045735 302 FIEA----------YNPLGLWKNGEIFLE--SSDGQLLLYDPNAQEMRDLGLRGLW----FYVHCFRESLLSIKREGKLL 365 (378)
Q Consensus 302 ~~~~----------~~~~~~~~~g~ill~--~~~~~~~~yd~~t~~~~~v~~~~~~----~~~~~y~~sl~~~~~~~~~~ 365 (378)
...- .+...+..++++++. -+.++++.|+++.++++........ ++-+.|-|+.--.=.++|++
T Consensus 133 h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~ 212 (346)
T COG2706 133 HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN 212 (346)
T ss_pred cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC
Q ss_pred C
Q 045735 366 G 366 (378)
Q Consensus 366 ~ 366 (378)
+
T Consensus 213 s 213 (346)
T COG2706 213 S 213 (346)
T ss_pred C
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=42.03 E-value=2.8e+02 Score=25.44 Aligned_cols=93 Identities=5% Similarity=-0.006 Sum_probs=51.0
Q ss_pred EEEEEECCC-ceeeeeCC-CCCCCCCcccEE-EECCeEEEEEecCCCCEEEEEEEcC-CeeEEEEEEcCCCcceeceEEE
Q 045735 237 VIISFDLSD-EVIQEIES-PCTPELTHGPLG-LYDNSLSLIALDEIKKCYQLWVLKE-RCWIKQFTIGPFIEAYNPLGLW 312 (378)
Q Consensus 237 ~il~fD~~~-e~~~~i~~-P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~~~~~ 312 (378)
.|-.||+.+ .+...++. +.. ... ..+. .-+|+..++.. .....+.+|.+++ ..+.....+.... -...+.+.
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~-~~~-~~l~~spd~~~lyv~~-~~~~~i~~~~~~~~g~l~~~~~~~~~~-~p~~i~~~ 88 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVP-GQV-QPMVISPDKRHLYVGV-RPEFRVLSYRIADDGALTFAAESPLPG-SPTHISTD 88 (330)
T ss_pred CEEEEEECCCCceeeeeEEecC-CCC-ccEEECCCCCEEEEEE-CCCCcEEEEEECCCCceEEeeeecCCC-CceEEEEC
Confidence 688888853 44444322 211 111 1222 23565444333 2467888998876 6676665554221 12235556
Q ss_pred ECCeEEEEe--eCCEEEEEeCCC
Q 045735 313 KNGEIFLES--SDGQLLLYDPNA 333 (378)
Q Consensus 313 ~~g~ill~~--~~~~~~~yd~~t 333 (378)
++|+.++.. .++.+.+||+++
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECC
Confidence 677766642 367899998874
No 92
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=41.57 E-value=2.2e+02 Score=29.75 Aligned_cols=98 Identities=15% Similarity=0.324 Sum_probs=56.7
Q ss_pred EEEEEECCCceee---eeCCCCCCCCCcccEEEECCe-EEEEEecCCCCEEEEEEEcC--------CeeEEEEEEcCCC-
Q 045735 237 VIISFDLSDEVIQ---EIESPCTPELTHGPLGLYDNS-LSLIALDEIKKCYQLWVLKE--------RCWIKQFTIGPFI- 303 (378)
Q Consensus 237 ~il~fD~~~e~~~---~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~IW~L~~--------~~W~~~~~i~~~~- 303 (378)
+...||....+|. .|..|.+....-..+...-.+ -|+... .+..+.||++.+ ..|..+. |....
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~--~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k 509 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS--VDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHK 509 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec--cCCeEEEEEEecccccCcCccceEEee-eecccc
Confidence 4566777777774 356665532211111111112 333232 678999999955 6798865 34211
Q ss_pred cceeceEEEECCeEEEEeeCCEEEEEeCCC-CeEE
Q 045735 304 EAYNPLGLWKNGEIFLESSDGQLLLYDPNA-QEMR 337 (378)
Q Consensus 304 ~~~~~~~~~~~g~ill~~~~~~~~~yd~~t-~~~~ 337 (378)
.-....++..||.++...-++.+..||..+ ++++
T Consensus 510 ~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 510 TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred CcccchhhcCCCcEEEEecCCEEEEecCCChhhhh
Confidence 011223455688888887778899999999 4443
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.95 E-value=3.6e+02 Score=26.14 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=66.2
Q ss_pred ceEECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCc-ccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEE
Q 045735 218 STYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTH-GPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQ 296 (378)
Q Consensus 218 ~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~-~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~ 296 (378)
.++=||.++=....++ .+-.||+.+.. ..-.+|.+..... ....+ ||---+... +...+.+|=|....=.+.
T Consensus 354 ~fHpDgLifgtgt~d~---~vkiwdlks~~-~~a~Fpght~~vk~i~FsE-NGY~Lat~a--dd~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDG---VVKIWDLKSQT-NVAKFPGHTGPVKAISFSE-NGYWLATAA--DDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred eEcCCceEEeccCCCc---eEEEEEcCCcc-ccccCCCCCCceeEEEecc-CceEEEEEe--cCCeEEEEEehhhcccce
Confidence 3445677665555543 68889998776 5557776533221 22222 443333333 455599998876221122
Q ss_pred EEEcCCCcceeceEEEECCeEEEEe-eCCEEEEEeCCCCeEEEEEE
Q 045735 297 FTIGPFIEAYNPLGLWKNGEIFLES-SDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 297 ~~i~~~~~~~~~~~~~~~g~ill~~-~~~~~~~yd~~t~~~~~v~~ 341 (378)
+.++-.. -...+.+...|..+... .+-.++.|+-+++.|.++.-
T Consensus 427 ~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 427 IQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred eeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 2222111 13345666678876664 35578888889999998853
No 94
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.94 E-value=2e+02 Score=27.10 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=44.4
Q ss_pred CeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeEE
Q 045735 269 NSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEMR 337 (378)
Q Consensus 269 g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~~ 337 (378)
|..+.... .++.|.+|-+.-. ..++++.-..+..+-+++.++|+.++. .+++.+-+||+++++-.
T Consensus 304 ~~~l~s~S--rDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 304 GQVLGSGS--RDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred ccEEEeec--ccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 34444433 6789999987653 334455444555667777778998886 56778999999998743
No 95
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=39.14 E-value=3.4e+02 Score=25.71 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=18.0
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCc
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDE 246 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e 246 (378)
.++..+|.+|.....+ .+.++|..++
T Consensus 251 sP~v~~~~vy~~~~~g----~l~ald~~tG 276 (394)
T PRK11138 251 TPVVVGGVVYALAYNG----NLVALDLRSG 276 (394)
T ss_pred CcEEECCEEEEEEcCC----eEEEEECCCC
Confidence 5667788888766543 6788887654
No 96
>PF13013 F-box-like_2: F-box-like domain
Probab=38.59 E-value=15 Score=28.11 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhcccc
Q 045735 11 NADLPADAIIEMLLRLPVKSLIRYRSVCK 39 (378)
Q Consensus 11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK 39 (378)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 66899999999999999888876666555
No 97
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.28 E-value=2.4e+02 Score=25.18 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=37.5
Q ss_pred CEEEEEEEcC--------CeeEEEEEEcC----CCcceeceEEE-ECCeEEEEeeCCEEEEEeCCCCeEEEEE
Q 045735 281 KCYQLWVLKE--------RCWIKQFTIGP----FIEAYNPLGLW-KNGEIFLESSDGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 281 ~~~~IW~L~~--------~~W~~~~~i~~----~~~~~~~~~~~-~~g~ill~~~~~~~~~yd~~t~~~~~v~ 340 (378)
..+.=|.-.+ ..|+.+--+.. .+++ ..+.+. +.+.|++..+|..++..|++++++++..
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeI-Nam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEI-NAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCcc-ceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 5666676655 34666432221 1111 223333 3677888888899999999999998764
No 98
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.76 E-value=1.2e+02 Score=26.31 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC--CeeEEEEEEcCCCcceeceEEEE-CCeEEEE-eeCCEEEEE
Q 045735 254 PCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE--RCWIKQFTIGPFIEAYNPLGLWK-NGEIFLE-SSDGQLLLY 329 (378)
Q Consensus 254 P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~~~~~-~g~ill~-~~~~~~~~y 329 (378)
|.+.......|.-.+|++...........+.+|-|.. ..|+..- ++...+.- ++.+ ++.++.. ..++..+.|
T Consensus 41 phDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l--~~~~~FgE--Git~~gd~~y~LTw~egvaf~~ 116 (262)
T COG3823 41 PHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKL--APDTVFGE--GITKLGDYFYQLTWKEGVAFKY 116 (262)
T ss_pred cCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeec--CCcccccc--ceeeccceEEEEEeccceeEEE
Confidence 4443333356777788777755445678999999986 6676643 33221111 1222 2334333 456778899
Q ss_pred eCCC-CeEEEEEEece
Q 045735 330 DPNA-QEMRDLGLRGL 344 (378)
Q Consensus 330 d~~t-~~~~~v~~~~~ 344 (378)
|.+| +.+.++.++|.
T Consensus 117 d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 117 DADTLEELGRFSYEGE 132 (262)
T ss_pred ChHHhhhhcccccCCc
Confidence 9887 45555655443
No 99
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=37.34 E-value=1.5e+02 Score=23.09 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.4
Q ss_pred EECCeEEEEee-----CCEEEEEeCCCCeEEEEEEe--cee----EEEEEeeecccccccc
Q 045735 312 WKNGEIFLESS-----DGQLLLYDPNAQEMRDLGLR--GLW----FYVHCFRESLLSIKRE 361 (378)
Q Consensus 312 ~~~g~ill~~~-----~~~~~~yd~~t~~~~~v~~~--~~~----~~~~~y~~sl~~~~~~ 361 (378)
.-||.++.... ...++.||+++.+++.+..+ ... ....-|...|.-+...
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 34777766522 46799999999999999875 111 3445666666554333
No 100
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=35.70 E-value=1.5e+02 Score=26.78 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred EEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC-CeeEEEEEEcCCCcceeceEEEECC
Q 045735 237 VIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE-RCWIKQFTIGPFIEAYNPLGLWKNG 315 (378)
Q Consensus 237 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~g 315 (378)
.+-..|+.+-+.... .|.........-+.-+|+||... ++...+-+|-|++ +. .+.++-.. ....++|.++.
T Consensus 173 tvKvWnl~~~~l~~~-~~gh~~~v~t~~vSpDGslcasG--gkdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnr 245 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTT-FIGHSGYVNTVTVSPDGSLCASG--GKDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNR 245 (315)
T ss_pred eEEEEccCCcchhhc-cccccccEEEEEECCCCCEEecC--CCCceEEEEEccCCce---eEeccCCC-eEeeEEecCCc
Confidence 566777766544331 22222222122234589999864 4788999999998 33 45444332 34455665554
Q ss_pred eEEEEeeCCEEEEEeCCCCeE
Q 045735 316 EIFLESSDGQLLLYDPNAQEM 336 (378)
Q Consensus 316 ~ill~~~~~~~~~yd~~t~~~ 336 (378)
-.+....+..+-+||++++..
T Consensus 246 ywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred eeEeeccCCceEEEeccchhh
Confidence 444444455689999998863
No 101
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=35.45 E-value=4.5e+02 Score=25.93 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=75.0
Q ss_pred eeEEEEEcCCCCcccccCC-CC----CCCcccc----CCCceEECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCC
Q 045735 187 SHIAVYNLSTDSWRGFRGF-KL----GRDYVCG----RIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTP 257 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~-~~----~~~~~~~----~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 257 (378)
-.+.+|++.+.+=+.++-. |. ..+.... ...-..++|-++-+..++ +...++...+-- |+++...
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~~~~--iqv~~~~ 360 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWDGYS--IQVGKKG 360 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCCCee--EEcCCCC
Confidence 3456777777777666531 11 1111100 013456689999888887 566666654433 3343332
Q ss_pred CCCcccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeE-EEEeeCCEEEEEeCCCCeE
Q 045735 258 ELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEI-FLESSDGQLLLYDPNAQEM 336 (378)
Q Consensus 258 ~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~i-ll~~~~~~~~~yd~~t~~~ 336 (378)
+..-.++...... ++....++..+.|.-.+. .+..++.+.-...--+.+..+|+. ++..+..++.++|+++++.
T Consensus 361 ~VrY~r~~~~~e~--~vigt~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 361 GVRYRRIQVDPEG--DVIGTNDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred ceEEEEEccCCcc--eEEeccCCceEEEEecCC---ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 2111222222222 222223455666665554 122333322212223445567774 4455667899999999999
Q ss_pred EEEEE
Q 045735 337 RDLGL 341 (378)
Q Consensus 337 ~~v~~ 341 (378)
+.+..
T Consensus 436 ~~idk 440 (668)
T COG4946 436 RLIDK 440 (668)
T ss_pred eEecc
Confidence 88864
No 102
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=34.57 E-value=2.5e+02 Score=23.84 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=34.3
Q ss_pred CEEEEEEEcC--CeeEEEEEEcCCCcceece-EEEE-CCeEEEE--------eeCCEEEEEeCCCCeEEEEEE
Q 045735 281 KCYQLWVLKE--RCWIKQFTIGPFIEAYNPL-GLWK-NGEIFLE--------SSDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 281 ~~~~IW~L~~--~~W~~~~~i~~~~~~~~~~-~~~~-~g~ill~--------~~~~~~~~yd~~t~~~~~v~~ 341 (378)
..=.||..+. ..|.. ..|++.+.-..|- ..|- +..++++ ..++.|+.||+.|++++.+..
T Consensus 86 giGkIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 3445666664 55532 3355543333442 2343 3334333 236789999999999988854
No 103
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=32.38 E-value=3.7e+02 Score=24.09 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=57.0
Q ss_pred EEEEEECCCceeeeeCCCCCCCCCcccEEE-ECCeEEEEEecCCCCEEEEEEEcC----CeeEEEEEEcCCCcceeceE-
Q 045735 237 VIISFDLSDEVIQEIESPCTPELTHGPLGL-YDNSLSLIALDEIKKCYQLWVLKE----RCWIKQFTIGPFIEAYNPLG- 310 (378)
Q Consensus 237 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~IW~L~~----~~W~~~~~i~~~~~~~~~~~- 310 (378)
.|-+.|+.+..+....+|++...- ..|.+ -+|+...... .....-+|.|-. ..=+.++.+.... ...+.
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i-~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C 221 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSI-QSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEPVHKFQAHN--GHILRC 221 (311)
T ss_pred cEEEEEccCCccccccCCCCCcce-eeEEEcCCCcEEEEec--CCccEEEEEccCCCccccceEhhheeccc--ceEEEE
Confidence 899999999999999999886433 33443 3666555443 577889999876 2222222222111 11221
Q ss_pred -EEECCeEEEE-eeCCEEEEEeCCCC
Q 045735 311 -LWKNGEIFLE-SSDGQLLLYDPNAQ 334 (378)
Q Consensus 311 -~~~~g~ill~-~~~~~~~~yd~~t~ 334 (378)
+.++++.+.. ..+..+.+||.++-
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCc
Confidence 2346666554 34667889998887
No 104
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.86 E-value=5.6e+02 Score=25.66 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=63.7
Q ss_pred EEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCe
Q 045735 237 VIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGE 316 (378)
Q Consensus 237 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ 316 (378)
.|+.+++..++....-.- +..+........+.++.++........++.|..++..=..+.... +.....+++.+||+
T Consensus 81 ~v~~ys~~~g~it~~~st-~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLST-DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCISPDGK 157 (541)
T ss_pred cEEEEEecCCeEEEEEec-CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEEcCCCC
Confidence 789999987766543211 111111222233556644333346788999988872111111111 12344566677888
Q ss_pred EEEEeeCCEEEEEeCCCCeEEEEEEecee--EEEEEeeec
Q 045735 317 IFLESSDGQLLLYDPNAQEMRDLGLRGLW--FYVHCFRES 354 (378)
Q Consensus 317 ill~~~~~~~~~yd~~t~~~~~v~~~~~~--~~~~~y~~s 354 (378)
+++... +.+-.||.+++++-+ .+.|.. .++..|+.+
T Consensus 158 ~l~~as-~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 158 ILLTAS-RQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EEEecc-ceEEEEEccCceEEE-EecCCCcceEEEEEEEe
Confidence 877653 579999999998533 334443 566777766
No 105
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=29.13 E-value=1.2e+02 Score=17.31 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEe
Q 045735 293 WIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYD 330 (378)
Q Consensus 293 W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd 330 (378)
|..+.++........-+.+.+++..++. ..++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5556666544434444556666676665 4567787776
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=27.91 E-value=7.5e+02 Score=26.18 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=51.1
Q ss_pred EEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC----CeeEEEEEEcCCCcceeceEEE
Q 045735 237 VIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE----RCWIKQFTIGPFIEAYNPLGLW 312 (378)
Q Consensus 237 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~----~~W~~~~~i~~~~~~~~~~~~~ 312 (378)
.|..+|+.+..-....+....... ..+.-.++...+... .+..+.||-+.. ..|.....+.-.......+++.
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V-~~v~f~~~~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTV-SYVRFVDSSTLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCE-EEEEEeCCCEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 788999876431111111111110 122223555444333 567899998864 2455555554333223335555
Q ss_pred ECCeEEEE-eeCCEEEEEeCCCCe
Q 045735 313 KNGEIFLE-SSDGQLLLYDPNAQE 335 (378)
Q Consensus 313 ~~g~ill~-~~~~~~~~yd~~t~~ 335 (378)
.++.++.. ..++.+.+|+..+..
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCC
Confidence 56666555 457789999987653
No 107
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.91 E-value=4.4e+02 Score=23.55 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=53.7
Q ss_pred EEEEEECCCceeeee-CCCCCCCCCcccEE-EECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCC--Cccee-----
Q 045735 237 VIISFDLSDEVIQEI-ESPCTPELTHGPLG-LYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPF--IEAYN----- 307 (378)
Q Consensus 237 ~il~fD~~~e~~~~i-~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~--~~~~~----- 307 (378)
.+...|+++++++.. +.-.+ ..+...+ +.++++. ....+.+++||-++..+=+ -.|.+. ++..+
T Consensus 137 ~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~~qil---sG~EDGtvRvWd~kt~k~v--~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQREYRGHTD--YVHSVVGRNANGQIL---SGAEDGTVRVWDTKTQKHV--SMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EEEEEEecCCEEEEEEcCCcc--eeeeeeecccCccee---ecCCCccEEEEecccccee--EEeccccChhhcCcccCc
Confidence 788999999999764 31111 1111111 2233322 2346889999998872211 223321 22222
Q ss_pred -ceEEEECCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 308 -PLGLWKNGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 308 -~~~~~~~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
+.++..+.+-+++....++-.|++...+-..
T Consensus 210 wigala~~edWlvCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 210 WIGALAVNEDWLVCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred eeEEEeccCceEEecCCCceeEEeccCCCceE
Confidence 3445556777777777789999998866443
No 108
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.79 E-value=6.6e+02 Score=26.36 Aligned_cols=111 Identities=8% Similarity=0.145 Sum_probs=61.7
Q ss_pred CceEECceEEEEeeecC-------C-ccEEEEEECCCceeeeeCCCCCCCCCc-----ccE--EE---ECCeEEEEEecC
Q 045735 217 DSTYWNGVCYWLAREEG-------E-NHVIISFDLSDEVIQEIESPCTPELTH-----GPL--GL---YDNSLSLIALDE 278 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~-------~-~~~il~fD~~~e~~~~i~~P~~~~~~~-----~~l--~~---~~g~L~~~~~~~ 278 (378)
..++.-+.-||+..... . ...+++-+++++.|....+|.-..... ..+ +. .++.|.+-+.
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~-- 327 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS-- 327 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC--
Confidence 55777888888874421 1 157999999999999999997643221 111 11 1445554332
Q ss_pred CCCEEEEEEEcCCeeEEEEEEcCCCccee--ceEEEECCeEEEE-eeCCEEEEEeCCC
Q 045735 279 IKKCYQLWVLKERCWIKQFTIGPFIEAYN--PLGLWKNGEIFLE-SSDGQLLLYDPNA 333 (378)
Q Consensus 279 ~~~~~~IW~L~~~~W~~~~~i~~~~~~~~--~~~~~~~g~ill~-~~~~~~~~yd~~t 333 (378)
+...+-||..+.++ |.+..+....+ -+...+||.++.. .+++++-+||...
T Consensus 328 klgQLlVweWqsEs----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 328 KLGQLLVWEWQSES----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ccceEEEEEeeccc----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 46789999776533 33332211211 2233345555444 3455555555554
No 109
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=27.69 E-value=31 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.7
Q ss_pred ccCCCCcHHHHHHHHhcCCccccch
Q 045735 9 ESNADLPADAIIEMLLRLPVKSLIR 33 (378)
Q Consensus 9 ~~~~~LP~Dll~eIL~rLP~~sl~r 33 (378)
+.|..||.|+-..||..|+-++|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 3399999999999999999888754
No 110
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=27.36 E-value=5.9e+02 Score=24.85 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=52.0
Q ss_pred EEEEEECCCc-ee-eeeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEEC
Q 045735 237 VIISFDLSDE-VI-QEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKN 314 (378)
Q Consensus 237 ~il~fD~~~e-~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~ 314 (378)
.|-.+|+... .. +.+. .+..........-.|.+.+... .+..+.||-++..+ .+..+.....-..-+.+..+
T Consensus 226 tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLK--GHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred eEEEeeccCCCeEEEEec--CCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCe--EEEeeeccCCceEEEEECCC
Confidence 8889999333 22 3333 2211111122233565555444 68899999988621 11222222222333445557
Q ss_pred CeEEEE-eeCCEEEEEeCCCCeE
Q 045735 315 GEIFLE-SSDGQLLLYDPNAQEM 336 (378)
Q Consensus 315 g~ill~-~~~~~~~~yd~~t~~~ 336 (378)
|.++.. ..++.+.+||..++..
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCce
Confidence 777666 4478899999999983
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=26.96 E-value=5.2e+02 Score=24.07 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=60.0
Q ss_pred ECceEEEEeeecCCccEEEEEECCCc-----eeeeeCCCCCCCCCcccEEEE-CCeEE-EEEecCCCCEEEEEEEcC---
Q 045735 221 WNGVCYWLAREEGENHVIISFDLSDE-----VIQEIESPCTPELTHGPLGLY-DNSLS-LIALDEIKKCYQLWVLKE--- 290 (378)
Q Consensus 221 ~~G~lywl~~~~~~~~~il~fD~~~e-----~~~~i~~P~~~~~~~~~l~~~-~g~L~-~~~~~~~~~~~~IW~L~~--- 290 (378)
.||.-.-.+..+. .|..||+.+- ++-.+.+|.+ ...++.+ .++-. ++.. ..+..+.++.|..
T Consensus 96 SdGK~lat~~~Dr---~Ir~w~~~DF~~~eHr~~R~nve~d----hpT~V~FapDc~s~vv~~-~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 96 SDGKKLATISGDR---SIRLWDVRDFENKEHRCIRQNVEYD----HPTRVVFAPDCKSVVVSV-KRGNKLCVYKLVKKTD 167 (420)
T ss_pred CCCceeEEEeCCc---eEEEEecchhhhhhhhHhhccccCC----CceEEEECCCcceEEEEE-ccCCEEEEEEeeeccc
Confidence 3666444444433 7888888652 2223344443 1334443 23222 2333 2566777777765
Q ss_pred -------CeeEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeEEEEEE
Q 045735 291 -------RCWIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 291 -------~~W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~~~v~~ 341 (378)
-.|...+-=...+....-+|+..++++++. ..+..++.||++.+.+..|.-
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT 226 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc
Confidence 123221100000111223677778888776 457789999999888877753
No 112
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.93 E-value=6.5e+02 Score=25.16 Aligned_cols=157 Identities=16% Similarity=0.219 Sum_probs=77.9
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccceeEEEEEcCCCC--cc
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDS--WR 200 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~--W~ 200 (378)
.+ +|+|-+|+||. +|...-+.++| -..+||.+|. =|++++..+- ......=+.|.+.... |+
T Consensus 58 EL-HvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG----trilvFGGMv------EYGkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 58 EL-HVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG----TRILVFGGMV------EYGKYSNDLYELQASRWEWK 121 (830)
T ss_pred hh-hhhccccceee-cchhcCCCCCc----hhhcceEecC----ceEEEEccEe------eeccccchHHHhhhhhhhHh
Confidence 67 99999999997 55555444433 2334555553 4566664321 1134555677776654 56
Q ss_pred cccCCC-----CCCCccccCCCceEECceEEEEeeecC-------------CccEEEEEECCCc--eeeee----CCCCC
Q 045735 201 GFRGFK-----LGRDYVCGRIDSTYWNGVCYWLAREEG-------------ENHVIISFDLSDE--VIQEI----ESPCT 256 (378)
Q Consensus 201 ~~~~~~-----~~~~~~~~~~~~v~~~G~lywl~~~~~-------------~~~~il~fD~~~e--~~~~i----~~P~~ 256 (378)
.+..-+ ++.|.. ..+-..+....|.+..-.. .+.+++-+-..+. -|... .+|..
T Consensus 122 rlkp~~p~nG~pPCPRl--GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p 199 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRL--GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199 (830)
T ss_pred hcCCCCCCCCCCCCCcc--CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence 654311 122221 1133444456666553210 0124444443443 23221 34555
Q ss_pred CCCCcccEE-EEC---CeEEEEEecCCCCEEEEEEEcC--CeeEEEE
Q 045735 257 PELTHGPLG-LYD---NSLSLIALDEIKKCYQLWVLKE--RCWIKQF 297 (378)
Q Consensus 257 ~~~~~~~l~-~~~---g~L~~~~~~~~~~~~~IW~L~~--~~W~~~~ 297 (378)
.+.+...+- +-+ -++.++......+-=++|.|+- -.|.+-.
T Consensus 200 RESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 200 RESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred cccceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 444322222 222 2344444323445568999987 7898754
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=26.21 E-value=5.4e+02 Score=26.40 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=63.9
Q ss_pred eEECceEEEEeeecCCccEEEEEECCCceeeeeC--CCCCCCCCcccEEEE--CCeEEEEEecCCCCEEEEEEEcC--Ce
Q 045735 219 TYWNGVCYWLAREEGENHVIISFDLSDEVIQEIE--SPCTPELTHGPLGLY--DNSLSLIALDEIKKCYQLWVLKE--RC 292 (378)
Q Consensus 219 v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~--~P~~~~~~~~~l~~~--~g~L~~~~~~~~~~~~~IW~L~~--~~ 292 (378)
...++..-.++..+. ..+..|+++++++..+. .|......-..++.. +.-++++. ....+.+|-|+. ..
T Consensus 436 ftid~~k~~~~s~~~--~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKNI--FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLESH 510 (691)
T ss_pred EEecCceEEEEeccc--ceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccceee
Confidence 455666555555333 27888999888887652 233222222344433 44566654 356899999987 44
Q ss_pred eEE-EEEEcCCCcceeceEEE--ECCeEEEEeeCCEEEEEeCCCCeEEE
Q 045735 293 WIK-QFTIGPFIEAYNPLGLW--KNGEIFLESSDGQLLLYDPNAQEMRD 338 (378)
Q Consensus 293 W~~-~~~i~~~~~~~~~~~~~--~~g~ill~~~~~~~~~yd~~t~~~~~ 338 (378)
|.. ...+ .....++. ..+.+++.+.+++++-||++.+++.+
T Consensus 511 ~l~~rln~-----~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 511 LLKVRLNI-----DVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred cchhccCc-----ceeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 444 1111 12222222 25778888888899999996655443
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=25.55 E-value=4.6e+02 Score=22.92 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred CceEEEEeeecCCccEEEEEECCCcee-eeeCC--CCCC-CC-CcccE-EEECCeEEEEEecCCCCEEEEEEEcCCeeEE
Q 045735 222 NGVCYWLAREEGENHVIISFDLSDEVI-QEIES--PCTP-EL-THGPL-GLYDNSLSLIALDEIKKCYQLWVLKERCWIK 295 (378)
Q Consensus 222 ~G~lywl~~~~~~~~~il~fD~~~e~~-~~i~~--P~~~-~~-~~~~l-~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~ 295 (378)
+|...+.....+. .|..||+.+.+. ..+.. |... .. ....+ ..-+|+..++... ....+.||-++ .|..
T Consensus 167 dg~~l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~--~~~~ 241 (300)
T TIGR03866 167 DGKELWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAK--TYEV 241 (300)
T ss_pred CCCEEEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECC--CCcE
Confidence 5654444432222 788999987654 33322 1111 00 01122 2335665444332 34568888654 3444
Q ss_pred EEEEcCCCcceeceEEEECCeEEEEe--eCCEEEEEeCCCCeE-EEEEE
Q 045735 296 QFTIGPFIEAYNPLGLWKNGEIFLES--SDGQLLLYDPNAQEM-RDLGL 341 (378)
Q Consensus 296 ~~~i~~~~~~~~~~~~~~~g~ill~~--~~~~~~~yd~~t~~~-~~v~~ 341 (378)
...+.... ....+.+.++|+.++.. .++.+.+||+++++. +++..
T Consensus 242 ~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 242 LDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 44332211 22335566778776653 467899999999884 55654
No 115
>PF15408 PH_7: Pleckstrin homology domain
Probab=25.27 E-value=26 Score=25.32 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=19.2
Q ss_pred cccchhhccccchhhhhCCHHHH
Q 045735 29 KSLIRYRSVCKSWYILTKSPRFI 51 (378)
Q Consensus 29 ~sl~r~r~VcK~W~~li~~p~F~ 51 (378)
+..+..+-|||.|-....+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 45566778999999999999984
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=24.95 E-value=3.8e+02 Score=26.55 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCCEEEEEEEcC-CeeEEEEEEcCCCcceeceEEEECCeEEEEeeCCEEEEEeCCCCeEEEEEEe
Q 045735 278 EIKKCYQLWVLKE-RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLR 342 (378)
Q Consensus 278 ~~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~~~~~~~yd~~t~~~~~v~~~ 342 (378)
.+...+.+|. +. -.|+++.. +|.. -.+++..|-+.+-.-.+..++.|.+|+.+-.+...
T Consensus 387 gqdk~v~lW~-~~k~~wt~~~~-d~~~----~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 387 GQDKHVRLWN-DHKLEWTKIIE-DPAE----CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred cCcceEEEcc-CCceeEEEEec-Ccee----EeeccCcceEEEeeccceEEEEecccceeEEEEec
Confidence 4677888888 44 77888653 3322 23344455333334455677777777665555443
No 117
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.13 E-value=4.4e+02 Score=22.21 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEEee-CCEEEEEeCCCCeE
Q 045735 279 IKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESS-DGQLLLYDPNAQEM 336 (378)
Q Consensus 279 ~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~~-~~~~~~yd~~t~~~ 336 (378)
....+.||-++...-.. .+........-+.+.+++.+++... ++.+..||+++++.
T Consensus 71 ~~~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 71 SDKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred CCCeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence 46789999887622111 1221111112233344566666654 78899999986553
No 118
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=24.10 E-value=5.9e+02 Score=23.72 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=54.5
Q ss_pred EEEEEECCCceeeeeCCCCCCCCCcccEE----EECCe-EEEEEecCCCCEEEEEEEcC----CeeEEEEEEcCCC-cce
Q 045735 237 VIISFDLSDEVIQEIESPCTPELTHGPLG----LYDNS-LSLIALDEIKKCYQLWVLKE----RCWIKQFTIGPFI-EAY 306 (378)
Q Consensus 237 ~il~fD~~~e~~~~i~~P~~~~~~~~~l~----~~~g~-L~~~~~~~~~~~~~IW~L~~----~~W~~~~~i~~~~-~~~ 306 (378)
.+..+|+.+++...+..|.........+. .-+++ +.+.........+.+...+- .++..... .... ...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeee
Confidence 78889999988888887732211122222 23565 66654445667777777654 33444222 1111 123
Q ss_pred eceEEE--ECCeEEEEe-e--CCEEEEEeCCCCeEEEE
Q 045735 307 NPLGLW--KNGEIFLES-S--DGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 307 ~~~~~~--~~g~ill~~-~--~~~~~~yd~~t~~~~~v 339 (378)
.+..+. .++.+++.. + -.+++.|+..++..+.+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 344444 345555543 2 23799999999886644
No 119
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=24.00 E-value=6.5e+02 Score=24.17 Aligned_cols=118 Identities=9% Similarity=0.041 Sum_probs=68.9
Q ss_pred ceEECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCccc-EEEECCeEEEEEe-cCCCCEEEEEEEcC-CeeE
Q 045735 218 STYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGP-LGLYDNSLSLIAL-DEIKKCYQLWVLKE-RCWI 294 (378)
Q Consensus 218 ~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~-l~~~~g~L~~~~~-~~~~~~~~IW~L~~-~~W~ 294 (378)
+...||.+...+..+. +|-..|..+++.-.-. +...+....+ +...+|.+.--.. ....+.+.+|--++ ++=.
T Consensus 180 sfn~dGs~l~TtckDK---kvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDK---KVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred EeccCCceeeeecccc---eeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc
Confidence 3445788888877764 8999999988765444 3332222222 2233555333222 34678899997766 2223
Q ss_pred EEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCe--EEEE
Q 045735 295 KQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQE--MRDL 339 (378)
Q Consensus 295 ~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~--~~~v 339 (378)
-...++-..++.-|+.=.+.+.|+++ .+|+.+-+|...... +..+
T Consensus 256 ~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 256 ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 34455544445555553334556666 346778888877766 5554
No 120
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=23.54 E-value=4.4e+02 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=30.8
Q ss_pred CceEECceEEEEeeecCCc-cEEEEEECCCceeeeeCCCCC
Q 045735 217 DSTYWNGVCYWLAREEGEN-HVIISFDLSDEVIQEIESPCT 256 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~-~~il~fD~~~e~~~~i~~P~~ 256 (378)
.+..+.|+||.+......+ .--.+||+.+++-..+.+|..
T Consensus 175 naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 175 NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 6788899999998776443 466899999887776666544
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=22.79 E-value=3.9e+02 Score=26.48 Aligned_cols=89 Identities=13% Similarity=0.267 Sum_probs=47.2
Q ss_pred CCCCEEEEEEEcCCeeEEEEEEcCCCc-ceec--eEEEE-CCeEEEEeeCCEEEEEeCCCCeEEE-EEEeceeEEEEEee
Q 045735 278 EIKKCYQLWVLKERCWIKQFTIGPFIE-AYNP--LGLWK-NGEIFLESSDGQLLLYDPNAQEMRD-LGLRGLWFYVHCFR 352 (378)
Q Consensus 278 ~~~~~~~IW~L~~~~W~~~~~i~~~~~-~~~~--~~~~~-~g~ill~~~~~~~~~yd~~t~~~~~-v~~~~~~~~~~~y~ 352 (378)
.....+.|| .|.+.....+... .+.. ..+++ +..+++..+.+.++.|+++++.+.+ .++-+. ... .|+
T Consensus 177 s~~h~lSVW-----dWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-~ek-k~V 249 (626)
T KOG2106|consen 177 SNPHMLSVW-----DWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-REK-KFV 249 (626)
T ss_pred CCccccchh-----hchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-ccc-eEE
Confidence 355667777 4666666554331 1222 22344 4455666667789999999987644 333211 222 444
Q ss_pred eccccccccccc---cCCCCcceE
Q 045735 353 ESLLSIKREGKL---LGGFDIPWH 373 (378)
Q Consensus 353 ~sl~~~~~~~~~---~~~~~~~~~ 373 (378)
-++.-.+.+.-- -+|..+.|-
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEe
Confidence 444433333222 267777774
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=22.67 E-value=4.4e+02 Score=26.88 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=34.6
Q ss_pred EEEEEECCCceee----eeCCCCCCCCCcccEEEECCeEEEEEecCCCCEEEEEEEcC
Q 045735 237 VIISFDLSDEVIQ----EIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKE 290 (378)
Q Consensus 237 ~il~fD~~~e~~~----~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~IW~L~~ 290 (378)
.|.-||...-.|+ .+..|..+....+.+.=..|..+++.. ..+.+++.|-++.
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa-sGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA-SGDSTIRPWDVKT 131 (720)
T ss_pred ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc-cCCceeeeeeecc
Confidence 7999999888887 123333322222334334588888765 3678999999987
No 123
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=22.53 E-value=5.8e+02 Score=23.05 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=37.6
Q ss_pred CceEECceEEEEeeecCC-c--cEEEEEECCCceeeeeCCCCCCCCCcccEEEECCeEEEEEe
Q 045735 217 DSTYWNGVCYWLAREEGE-N--HVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIAL 276 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~-~--~~il~fD~~~e~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~ 276 (378)
+--+.+|.+|..+..... . ..+..-+...+.|+.+.+|...+.......-.++-|.++..
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 445779999998865432 1 46777788889999999997766555566667888888644
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.45 E-value=6.2e+02 Score=23.37 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=41.2
Q ss_pred CCCEEEEEEEcC-CeeEEEEEEcCCCcceec-eE-EE-ECCeEEEE-eeCCEEEEEeCCCCeEEEEEEeceeEEEEEee
Q 045735 279 IKKCYQLWVLKE-RCWIKQFTIGPFIEAYNP-LG-LW-KNGEIFLE-SSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFR 352 (378)
Q Consensus 279 ~~~~~~IW~L~~-~~W~~~~~i~~~~~~~~~-~~-~~-~~g~ill~-~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~y~ 352 (378)
=+..+++|.+++ +.=.-+- ......| +. .| ++|.-++. .-++.+-.||+.+++...|..+......+-++
T Consensus 48 WD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv 122 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWV 122 (347)
T ss_pred cCCceEEEEEecCCcccchh----hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEe
Confidence 366899999987 2211111 1122333 33 23 34554454 55788999999999999998765443333333
No 125
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.30 E-value=7.6e+02 Score=24.34 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=23.4
Q ss_pred CceEECceEEEEeeecCCccEEEEEECCCc--eeee
Q 045735 217 DSTYWNGVCYWLAREEGENHVIISFDLSDE--VIQE 250 (378)
Q Consensus 217 ~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~ 250 (378)
.++..+|.+|...... .+.++|..++ .|+.
T Consensus 56 sPvv~~g~vy~~~~~g----~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 56 TPLVVDGDMYFTTSHS----ALFALDAATGKVLWRY 87 (488)
T ss_pred CCEEECCEEEEeCCCC----cEEEEECCCChhhcee
Confidence 6788999999877654 7999999764 4554
No 126
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.21 E-value=92 Score=22.83 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=14.5
Q ss_pred CCEEEEEeCCCCeEEEEE
Q 045735 323 DGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 323 ~~~~~~yd~~t~~~~~v~ 340 (378)
.++++.||++|++.+-+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 467999999999987663
No 127
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.14 E-value=6.8e+02 Score=23.71 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=57.2
Q ss_pred CCCccccCCCceEECceEEEEeeecCCccEEEEEECC--Cceeeee-CCCCCCCCCcccEEEECCeEEEEEecCC-----
Q 045735 208 GRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLS--DEVIQEI-ESPCTPELTHGPLGLYDNSLSLIALDEI----- 279 (378)
Q Consensus 208 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~--~e~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~----- 279 (378)
.+|.......+..++..+|--....+. .-..+|+. +..|+.+ .+|...+.. ..-+.++|+|.++.....
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G~--afy~ldL~~~~k~W~~~a~FpG~~rnq-a~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAGT--AFYVLDLKKPGKGWTKIADFPGGARNQ-AVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred CCCccccccccceecceEEEEeccCCc--cceehhhhcCCCCceEcccCCCccccc-chheeeCCeEEEeeccccCCCCC
Confidence 455544333667777788887765543 45566664 5689888 456554332 344567999998632111
Q ss_pred -CCEEEEEEEcC--CeeEEEEEEcCCC
Q 045735 280 -KKCYQLWVLKE--RCWIKQFTIGPFI 303 (378)
Q Consensus 280 -~~~~~IW~L~~--~~W~~~~~i~~~~ 303 (378)
...-++++.+. .+|.++.+..|.-
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~sP~g 135 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTRSPTG 135 (381)
T ss_pred ceEeeeeEEecCCCChhheeccccccc
Confidence 12345666665 7899999887643
No 128
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.35 E-value=5.5e+02 Score=25.99 Aligned_cols=108 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred eecccceEEEEeCCceEEEEeccccceecCCCCcCC--CCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCcccc
Q 045735 109 VGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRAS--LPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDF 186 (378)
Q Consensus 109 ~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 186 (378)
+..+||||++......+-.|+|-+++....=..... ..+|.+......++.|..+.-+.-| +.. .
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV------Gts-------~ 249 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV------GTS-------T 249 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe------ecc-------C
Q ss_pred eeEEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCccEEEEEE
Q 045735 187 SHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFD 242 (378)
Q Consensus 187 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD 242 (378)
-.+.+|++++.+=-.+....-.+|.. .+.|+...... .|++.|
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~-----------~l~~~~~~~q~--~v~S~D 292 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIK-----------KLDWQDTDQQN--KVVSMD 292 (703)
T ss_pred CcEEEEEcccCCceeecccCCcccee-----------eecccccCCCc--eEEecc
No 129
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=21.31 E-value=6.5e+02 Score=23.20 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=50.5
Q ss_pred CceEE-CceEEEEeeecCC--c--cEEEEEECCCceeeeeCCCCC-CCCCcccEEEE-CCeEEEEEecCCCCEEEEEEEc
Q 045735 217 DSTYW-NGVCYWLAREEGE--N--HVIISFDLSDEVIQEIESPCT-PELTHGPLGLY-DNSLSLIALDEIKKCYQLWVLK 289 (378)
Q Consensus 217 ~~v~~-~G~lywl~~~~~~--~--~~il~fD~~~e~~~~i~~P~~-~~~~~~~l~~~-~g~L~~~~~~~~~~~~~IW~L~ 289 (378)
.++.. +|.+..-...... . ..++..|=..++|+....+.. .......++++ +|+|.++..........+..-.
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~ 229 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESR 229 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEc
Confidence 45666 4887766543221 1 245555556678987655443 22234678888 8999886543224556666666
Q ss_pred C--CeeEEEEEEc
Q 045735 290 E--RCWIKQFTIG 300 (378)
Q Consensus 290 ~--~~W~~~~~i~ 300 (378)
+ .+|.......
T Consensus 230 D~G~tWs~~~~~~ 242 (351)
T cd00260 230 DMGTTWTEALGTL 242 (351)
T ss_pred CCCcCcccCcCCc
Confidence 6 8899866543
No 130
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.23 E-value=7.8e+02 Score=24.03 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=60.6
Q ss_pred eEECceEEEEeeecCCccEEEEEECCCceeeeeCCCCCCCCCcccE-EEECCeEEEEEecCCCCEEEEEEEcCCeeEEEE
Q 045735 219 TYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPL-GLYDNSLSLIALDEIKKCYQLWVLKERCWIKQF 297 (378)
Q Consensus 219 v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~l-~~~~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~ 297 (378)
+.-+|..-.-...+. .+..++..+.+...+..+......-..+ ...+|+ +++.. ..+..+.||-+.+. =..+.
T Consensus 167 fs~~g~~l~~~~~~~---~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~-s~D~tiriwd~~~~-~~~~~ 240 (456)
T KOG0266|consen 167 FSPDGRALAAASSDG---LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSG-SDDKTLRIWDLKDD-GRNLK 240 (456)
T ss_pred EcCCCCeEEEccCCC---cEEEeecccccchhhccccccccceeeeEECCCCc-EEEEe-cCCceEEEeeccCC-CeEEE
Confidence 344666633332322 5677777444422333332221111122 233566 33333 37889999999541 11223
Q ss_pred EEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeEEEE
Q 045735 298 TIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEMRDL 339 (378)
Q Consensus 298 ~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~~~v 339 (378)
++........-+++...|.+++. ..++.+.+||.++++..+.
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 33333333445566667776665 5577899999999776554
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.15 E-value=9.8e+02 Score=25.18 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=41.1
Q ss_pred CCeEEEEEecCCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEEe--eCCEEEEEeCCCCeEEEEE
Q 045735 268 DNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLES--SDGQLLLYDPNAQEMRDLG 340 (378)
Q Consensus 268 ~g~L~~~~~~~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~~--~~~~~~~yd~~t~~~~~v~ 340 (378)
.|+..+..+ -+.+++.|=|+...=-+.++. |.+--..-+++.+.|++++.. +...+++++++|+++-++-
T Consensus 403 ~g~~llssS--LDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 403 RGNVLLSSS--LDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred cCCEEEEee--cCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 444444333 356788887776222222332 222112334555679988873 4557999999999987764
No 132
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=21.08 E-value=2.4e+02 Score=21.11 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=29.0
Q ss_pred ceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEE
Q 045735 123 KYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLIL 173 (378)
Q Consensus 123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 173 (378)
++ +..+|.+++|...- . ....+.+..|+..+.|.++...
T Consensus 10 ~v-~~~~~~~~~W~~~~--~---------~~g~v~~~~d~~~~~y~i~~~~ 48 (104)
T cd00837 10 QV-YTADPSTGKWVPAS--G---------GTGAVSLVKDSTRNTYRIRGVD 48 (104)
T ss_pred EE-EEECCCCCceEECC--C---------CeEEEEEEEECCCCEEEEEEEe
Confidence 56 88999999998531 1 2456778889988899888774
No 133
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=20.22 E-value=40 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=16.8
Q ss_pred ccccccCCCCcHHHHHHHHhcCC
Q 045735 5 ILMVESNADLPADAIIEMLLRLP 27 (378)
Q Consensus 5 ~~m~~~~~~LP~Dll~eIL~rLP 27 (378)
.+|.+.+..||.|+|++|-.|+.
T Consensus 48 D~MTa~~~~~p~~~L~~is~~I~ 70 (93)
T PF00958_consen 48 DFMTADWARLPWELLEEISSRIT 70 (93)
T ss_dssp SSSSEEE-TB-HHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHHHHHHHH
Confidence 45777789999999998877764
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.12 E-value=4.5e+02 Score=24.37 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=40.7
Q ss_pred CCCCEEEEEEEcCCeeEEEEEEcCCCcceeceEEEECCeEEEE-eeCCEEEEEeCCCCeEEEEEE
Q 045735 278 EIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLE-SSDGQLLLYDPNAQEMRDLGL 341 (378)
Q Consensus 278 ~~~~~~~IW~L~~~~W~~~~~i~~~~~~~~~~~~~~~g~ill~-~~~~~~~~yd~~t~~~~~v~~ 341 (378)
.++..+.||-|.+ .-+.+.+|..... ..-+.+..++.|+-+ ++...+-.||++.+++-++..
T Consensus 375 SDDrTvKvWdLrN-MRsplATIRtdS~-~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 375 SDDRTVKVWDLRN-MRSPLATIRTDSP-ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred CCCceEEEeeecc-ccCcceeeecCCc-cceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 4678999999987 1123344443221 122455556655544 677889999999999988863
No 135
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.08 E-value=11 Score=22.91 Aligned_cols=8 Identities=50% Similarity=1.385 Sum_probs=6.1
Q ss_pred cceEEeec
Q 045735 370 IPWHILGV 377 (378)
Q Consensus 370 ~~~~~~~~ 377 (378)
..|||+|.
T Consensus 7 viWhvLGY 14 (42)
T PF09574_consen 7 VIWHVLGY 14 (42)
T ss_pred HHHHHhcc
Confidence 57999884
Done!