Query 045736
Match_columns 207
No_of_seqs 172 out of 1403
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 3.6E-36 7.8E-41 283.8 5.7 168 1-207 367-541 (571)
2 COG3104 PTR2 Dipeptide/tripept 99.2 3.1E-12 6.7E-17 118.6 2.8 132 2-180 316-451 (498)
3 PF00854 PTR2: POT family; In 99.2 1.2E-11 2.7E-16 110.4 2.4 126 1-166 241-371 (372)
4 TIGR00924 yjdL_sub1_fam amino 99.1 2.1E-10 4.5E-15 106.2 6.4 135 1-183 303-441 (475)
5 TIGR00926 2A1704 Peptide:H+ sy 99.0 2E-10 4.3E-15 110.8 4.2 62 116-179 560-621 (654)
6 KOG1237 H+/oligopeptide sympor 98.9 1.2E-09 2.7E-14 103.8 3.1 77 38-125 125-202 (571)
7 PRK10207 dipeptide/tripeptide 98.8 5.8E-09 1.3E-13 97.2 6.4 136 1-183 300-439 (489)
8 PRK09584 tppB putative tripept 98.8 7E-09 1.5E-13 96.7 5.4 132 1-182 307-441 (500)
9 PRK15462 dipeptide/tripeptide 98.6 4.5E-08 9.8E-13 91.8 5.9 136 1-183 299-438 (493)
10 PF00854 PTR2: POT family; In 98.2 1E-06 2.2E-11 78.7 2.8 81 78-176 35-116 (372)
11 TIGR00926 2A1704 Peptide:H+ sy 97.0 0.0003 6.5E-09 68.3 2.0 63 1-89 271-336 (654)
12 COG3104 PTR2 Dipeptide/tripept 91.6 0.19 4.1E-06 47.5 3.7 68 76-147 117-202 (498)
13 KOG3762 Predicted transporter 77.9 1.9 4E-05 41.7 2.8 59 120-180 458-521 (618)
14 PF03825 Nuc_H_symport: Nucleo 67.2 5.7 0.00012 36.3 3.3 49 132-180 310-359 (400)
15 TIGR02332 HpaX 4-hydroxyphenyl 53.9 16 0.00036 32.8 3.8 52 128-179 101-152 (412)
16 TIGR00806 rfc RFC reduced fola 52.3 18 0.00039 34.6 3.9 50 131-181 123-172 (511)
17 TIGR00889 2A0110 nucleoside tr 44.7 37 0.0008 30.7 4.6 53 130-182 315-368 (418)
18 KOG2927 Membrane component of 43.6 22 0.00047 32.5 2.8 44 138-184 196-239 (372)
19 cd06174 MFS The Major Facilita 42.8 24 0.00053 29.4 3.0 57 127-183 269-325 (352)
20 TIGR00880 2_A_01_02 Multidrug 41.3 40 0.00087 23.8 3.6 54 130-183 58-111 (141)
21 PRK10207 dipeptide/tripeptide 38.4 73 0.0016 29.7 5.6 42 80-125 109-151 (489)
22 PRK10489 enterobactin exporter 38.0 48 0.001 29.4 4.2 51 133-183 322-372 (417)
23 PF05978 UNC-93: Ion channel r 37.6 45 0.00097 26.6 3.5 59 126-184 92-150 (156)
24 KOG1330 Sugar transporter/spin 37.3 5.8 0.00012 37.6 -1.9 54 131-184 129-182 (493)
25 TIGR00893 2A0114 d-galactonate 35.9 40 0.00086 28.5 3.2 52 129-180 88-139 (399)
26 TIGR00900 2A0121 H+ Antiporter 35.7 61 0.0013 27.3 4.4 53 130-182 308-360 (365)
27 TIGR00711 efflux_EmrB drug res 33.8 46 0.00099 29.9 3.4 52 130-181 355-406 (485)
28 PF07690 MFS_1: Major Facilita 31.9 71 0.0015 26.8 4.1 58 126-183 88-145 (352)
29 PF14898 DUF4491: Domain of un 31.5 1.2E+02 0.0026 22.4 4.6 57 129-201 37-93 (94)
30 TIGR00887 2A0109 phosphate:H+ 30.8 62 0.0013 29.8 3.8 54 129-182 121-174 (502)
31 PF07690 MFS_1: Major Facilita 30.6 53 0.0011 27.6 3.1 46 130-175 306-351 (352)
32 PF15345 TMEM51: Transmembrane 30.3 76 0.0016 27.3 3.9 20 113-139 52-71 (233)
33 TIGR00902 2A0127 phenyl propri 30.3 57 0.0012 28.7 3.4 51 131-182 301-352 (382)
34 PRK12382 putative transporter; 29.5 56 0.0012 28.6 3.2 53 131-183 310-362 (392)
35 TIGR00903 2A0129 major facilit 29.1 83 0.0018 28.0 4.2 52 130-182 86-137 (368)
36 TIGR00894 2A0114euk Na(+)-depe 28.9 55 0.0012 29.6 3.1 57 127-183 135-191 (465)
37 PF05977 MFS_3: Transmembrane 27.5 57 0.0012 31.0 3.0 51 127-177 311-365 (524)
38 PRK05122 major facilitator sup 26.9 71 0.0015 28.0 3.4 50 131-180 310-359 (399)
39 TIGR00710 efflux_Bcr_CflA drug 25.7 65 0.0014 27.6 2.8 52 129-180 99-150 (385)
40 TIGR00900 2A0121 H+ Antiporter 25.5 1.1E+02 0.0023 25.8 4.1 51 129-179 98-148 (365)
41 PRK11646 multidrug resistance 24.7 60 0.0013 29.0 2.5 63 131-193 305-367 (400)
42 PRK12307 putative sialic acid 24.0 86 0.0019 27.6 3.4 50 130-179 113-162 (426)
43 TIGR00883 2A0106 metabolite-pr 23.7 66 0.0014 27.4 2.5 50 131-180 104-153 (394)
44 PF12133 Sars6: Open reading f 23.5 93 0.002 20.7 2.5 39 133-188 9-47 (62)
45 TIGR00895 2A0115 benzoate tran 23.4 1.2E+02 0.0026 25.8 4.1 49 131-179 346-394 (398)
46 TIGR00891 2A0112 putative sial 23.3 99 0.0021 26.6 3.6 51 130-180 107-157 (405)
47 PRK11663 regulatory protein Uh 22.9 99 0.0022 27.8 3.6 47 131-177 119-165 (434)
48 TIGR00895 2A0115 benzoate tran 22.7 46 0.00099 28.5 1.3 51 130-180 112-162 (398)
49 TIGR00924 yjdL_sub1_fam amino 22.5 1.1E+02 0.0025 28.2 4.0 42 81-125 107-149 (475)
50 PRK10504 putative transporter; 21.4 1.1E+02 0.0025 27.4 3.7 53 130-182 360-412 (471)
51 PRK10642 proline/glycine betai 21.4 1.1E+02 0.0024 28.1 3.6 49 131-179 126-174 (490)
52 TIGR00879 SP MFS transporter, 21.2 1E+02 0.0022 26.9 3.3 51 129-179 133-183 (481)
53 KOG2533 Permease of the major 21.0 1E+02 0.0022 29.2 3.4 58 131-188 142-199 (495)
54 cd06174 MFS The Major Facilita 20.1 54 0.0012 27.2 1.2 55 129-183 93-147 (352)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-36 Score=283.81 Aligned_cols=168 Identities=29% Similarity=0.417 Sum_probs=145.0
Q ss_pred CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
|||+++++|+||||+++++.. ++++|+|||+++| ++||.++++.+.+.+ ||+ ++|
T Consensus 367 mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP---~~~~~t~~~~~~t~l------qri-------------g~G 424 (571)
T KOG1237|consen 367 MDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP---FARKLTGNPFGITPL------QRI-------------GIG 424 (571)
T ss_pred cCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh---hhhhhcCCCCCCChh------hee-------------ecc
Confidence 899999669999999999964 4999999999999 999999999877766 766 888
Q ss_pred HHHHHHHHHHhc-C-ccc-ccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccc
Q 045736 78 GVFEAFAMGALE-D-GHR-PCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPT 154 (207)
Q Consensus 78 ~~~~~l~mva~g-g-~~r-~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~ 154 (207)
+++..++|++.| . ..| ..+.. ......++|++ | |+|||+++|++|+|..+|++||+|+|+|+
T Consensus 425 ~~~si~sm~~aa~vE~krl~~~~~----------~~~~~~~mSi~---W--~iPQyvLig~~Evf~~vg~lEFfY~qaP~ 489 (571)
T KOG1237|consen 425 LVLSILSMAVAGIVEAKRLKTAVS----------LLVETNPMSIL---W--QIPQYVLLGAGEVFTSVGGLEFFYSQAPE 489 (571)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhh----------ccCCCCCeeHH---H--HHHHHHHHHHHHHHHhhhhHHHhHhhCCH
Confidence 889999999888 3 222 22211 11123456665 8 99999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCCCCC-CCCCCCcCCCC
Q 045736 155 EIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFA-NTLNKGHLDIF 207 (207)
Q Consensus 155 ~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~W~~-~~lN~g~Ld~f 207 (207)
+|||+++|+|+++.++||+++++++.++++.|++ ..+|++ +|||++|||||
T Consensus 490 sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~F 541 (571)
T KOG1237|consen 490 SMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYF 541 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHH
Confidence 9999999999999999999999999999999976 347999 99999999997
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.24 E-value=3.1e-12 Score=118.59 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=102.1
Q ss_pred CCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHhH
Q 045736 2 NGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWG 78 (207)
Q Consensus 2 ~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~~ 78 (207)
||++. ||++|++.+|+++ ++++.|+++++.+| +.++...|+. .. ++++++
T Consensus 316 ~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~---l~~~~~~ps~-----------------~~------KFalGl 368 (498)
T COG3104 316 NRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTK---LGRGNKQPST-----------------PI------KFALGL 368 (498)
T ss_pred ccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhH---hhcCCCCCCc-----------------ch------HHHHHH
Confidence 56655 4999999988774 67999999999999 8776522221 11 678887
Q ss_pred HHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736 79 VFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR 157 (207)
Q Consensus 79 ~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk 157 (207)
...++..+.+. ++++.. +. ....|.+| ++|.|++++++|.|.++.++|+.++.+|++|+
T Consensus 369 ~l~g~~fl~l~~~~~~~~----------~~--------~~~~s~~~--lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~ 428 (498)
T COG3104 369 ILAGLGFLILLLAGIWFG----------GP--------SGLVSVWW--LVLSYVLQSFGELFISPVGLSMVTKLAPPALK 428 (498)
T ss_pred HHHHHHHHHHHHHHHhhc----------CC--------CCCcCHHH--HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence 78888777655 322211 10 11124457 99999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHH
Q 045736 158 SLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 158 s~~~al~~~~~~~g~~l~~~lv~ 180 (207)
|..+|+|+++.+.|+.++..+..
T Consensus 429 s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 429 SFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHHHHHhhceecc
Confidence 99999999999999999876555
No 3
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.15 E-value=1.2e-11 Score=110.41 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
||+.+++.+++|++++|++. +++++|++|++++| ++|+..+ .+.. + ++++|
T Consensus 241 ~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p---~~~~~~~----~~~~------~-------------k~~~G 294 (372)
T PF00854_consen 241 MDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYP---LLRRGIQ----PSPP------Q-------------KFGIG 294 (372)
T ss_dssp TTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCC---TTTT----------H------H-------------HHHHH
T ss_pred cccccccccccccchhhhHHHHHHHHHHHHHHHHHhH---Hhhhccc----chhh------h-------------hhhHH
Confidence 68889944999999999885 45999999999999 7772111 1111 2 66888
Q ss_pred HHHHHHHHHHhc--CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccch
Q 045736 78 GVFEAFAMGALE--DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTE 155 (207)
Q Consensus 78 ~~~~~l~mva~g--g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~ 155 (207)
.++.+++++..+ +.+|++.. ++-+..++ ....+++. +| ++|||++.+++|. +.+||+|+++|++
T Consensus 295 ~~~~~~~~~~~~~v~~~r~~~~----~~~~~~~~-~~~~~~~~---~~--~~~e~~l~~~g~~----~~~~~a~~~~p~~ 360 (372)
T PF00854_consen 295 MVFAILAMFVAAIVEIRRLCYA----QPCGKVSP-WWQVPMYI---FW--LIPEYFLSGTGES----AAYEFAPSRAPSS 360 (372)
T ss_dssp -HHHHHHHHTTTHHHH---HH--------TT--T-HHHHHHHH---HH--HHHHHTTTTHHHH----HHHHHTTTT-SSS
T ss_pred HHHHHHHHHHHHHHHhhhhhcc----cccCCCCh-hhHHHHHH---HH--HHHHHHhhHHHHH----HHHHhhHHhhhHH
Confidence 778888887766 34444321 11010000 01111111 23 5555555555555 5667999999999
Q ss_pred hhhHHHHHHHH
Q 045736 156 IRSLGLSLYLS 166 (207)
Q Consensus 156 mks~~~al~~~ 166 (207)
|||+.++++.+
T Consensus 361 m~~~~~~~~~~ 371 (372)
T PF00854_consen 361 MMGIWFALSAF 371 (372)
T ss_dssp STHHHHHHH--
T ss_pred HHHHHHHHhcc
Confidence 99999998765
No 4
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.06 E-value=2.1e-10 Score=106.24 Aligned_cols=135 Identities=9% Similarity=-0.027 Sum_probs=99.5
Q ss_pred CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
||++++ +++||++.+++++ ++++.|+++++ ++ .++|..+++. ... |+++|
T Consensus 303 ~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~-~~---~l~~~~~~~~-----------~~~-----------k~~~G 355 (475)
T TIGR00924 303 MHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMI-WT---RLGRKGKDPT-----------TPL-----------KFTLG 355 (475)
T ss_pred cccccc-ceEECHHHHHhhhHHHHHHHHHHHHHH-HH---HHHhCCCCCC-----------cHH-----------HHHHH
Confidence 688888 6999999988875 45888888864 34 3433212111 111 66888
Q ss_pred HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736 78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI 156 (207)
Q Consensus 78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m 156 (207)
.++.++.++.++ . +.. +++ + . ..|++| ++++|++++++|.+..++..++.++++|+++
T Consensus 356 ~~l~~~~~~~~~~~--~~~-----~~~----~-----~---~~s~~~--~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~ 414 (475)
T TIGR00924 356 MLFCGASFLTFAAS--IWF-----ADA----G-----G---LTSPWF--MVLIYLFQTLGELMISPLGLSWWTKIAPQRL 414 (475)
T ss_pred HHHHHHHHHHHHHH--Hhh-----cCC----C-----C---ccCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 778877776554 2 100 010 0 0 135667 8999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 157 RSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 157 ks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
|+..++++.+..++|+++++.+.....
T Consensus 415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 415 MGQMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988777553
No 5
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.01 E-value=2e-10 Score=110.79 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=56.5
Q ss_pred cceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 116 ISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 116 ~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
.+-.|++| |+|||++++++|++..++++||+|+|+|++|||+++++|+++.++|+++..++.
T Consensus 560 ~~~~~~~w--q~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~ 621 (654)
T TIGR00926 560 VNTVSILW--QIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIA 621 (654)
T ss_pred CCceeHHH--HHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467778 999999999999999999999999999999999999999999999999876543
No 6
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=98.85 E-value=1.2e-09 Score=103.83 Aligned_cols=77 Identities=32% Similarity=0.456 Sum_probs=62.6
Q ss_pred hhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHhHHHHHHHHHHhc-Ccccccchhhhhhcccccchhhhhhcc
Q 045736 38 VYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKI 116 (207)
Q Consensus 38 ~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~ 116 (207)
.....++|++|.... ....|.+++.. |..++ |.+++++++| |++|+|+.++||||||+.++++++.+.
T Consensus 125 a~~~~l~p~~~~~~~---~~~~c~~~s~~------q~~~~--~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~ 193 (571)
T KOG1237|consen 125 AMIPALLPFMCKFKP---GGNVCESPSKL------QLAVL--YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP 193 (571)
T ss_pred HHhhhcCCccccCCC---CCCcccCcchH------HHHHH--HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence 444456777761111 12367777777 88888 9999999999 999999999999999999999999999
Q ss_pred ceeeeehhc
Q 045736 117 SFFNWSWRI 125 (207)
Q Consensus 117 s~Fnw~y~~ 125 (207)
+||||||+.
T Consensus 194 ~fFnW~yf~ 202 (571)
T KOG1237|consen 194 SFFNWFYFS 202 (571)
T ss_pred cchhHHHHH
Confidence 999999977
No 7
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.82 E-value=5.8e-09 Score=97.20 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=95.6
Q ss_pred CCCCCCCCcccccccccch---hhhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQIN---LHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~---~~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
+|+++. |+++||+.+|.+ .++++.|+.++ ++| .++|...+++ .. + ++++|
T Consensus 300 ~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~-l~~---rl~~r~~~~~---~~------~-------------k~~~G 352 (489)
T PRK10207 300 VHHEIL-GFSINPVSFQALNPFWVVVASPILAG-IYT---HLGSKGKDLS---MP------M-------------KFTLG 352 (489)
T ss_pred cccccc-ceEECHHHHHhHhHHHHHHHHHHHHH-HHH---HHhhCCCCCC---cH------H-------------HHHHH
Confidence 466666 699999999766 45588999875 667 6654332221 10 1 55777
Q ss_pred HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736 78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI 156 (207)
Q Consensus 78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m 156 (207)
+++.++.++.+. .+.. +.+.+. . .+.+| ++++|++.|++|.+..+.++++.++.+|++|
T Consensus 353 ~~l~~~~~~~~~~~~~~----------~~~~~~-----~---~s~~~--~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~ 412 (489)
T PRK10207 353 MFLCSLGFLTAAAAGMW----------FADAQG-----L---TSPWF--IVLVYLFQSLGELFISALGLAMIAALVPQHL 412 (489)
T ss_pred HHHHHHHHHHHHHHHHh----------hcCCCC-----c---cCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence 666666554322 1000 000000 0 13346 7899999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 157 RSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 157 ks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
+|.+++++.++.++|+.++..+.+...
T Consensus 413 ~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 413 MGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988776553
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.78 E-value=7e-09 Score=96.69 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=94.6
Q ss_pred CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
+|+++. |+.+|++.+|.++. +++.|+.+++ ++ ..++ +.+ .. + +++++
T Consensus 307 ~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~-~~---~l~~---r~~---~~------~-------------~~~~G 356 (500)
T PRK09584 307 VEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI-YN---KMGD---RLP---MP------H-------------KFAIG 356 (500)
T ss_pred cccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH-HH---HhCc---CCC---cH------H-------------HHHHH
Confidence 466777 69999999888754 4778888763 22 2221 111 00 1 56777
Q ss_pred HHHHHHHHHHhcCcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736 78 GVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR 157 (207)
Q Consensus 78 ~~~~~l~mva~gg~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk 157 (207)
.++.++.++.++ ++.+ +.+++ ...|++| ++++|+++|++|.+..+.++++.++.+|+++|
T Consensus 357 ~~l~~l~f~~l~---------~~~~-~~~~~--------~~vs~~~--~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r 416 (500)
T PRK09584 357 MVLCSGAFLVLP---------LGAK-FANDA--------GIVSVNW--LIASYGLQSIGELMISGLGLAMVAQLVPQRLM 416 (500)
T ss_pred HHHHHHHHHHHH---------HHHH-hcCCC--------CccCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence 777777766543 1111 10000 1245567 89999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736 158 SLGLSLYLSTLGVGSILSSFIISAV 182 (207)
Q Consensus 158 s~~~al~~~~~~~g~~l~~~lv~~v 182 (207)
+.++++|.++.++|+++++.+....
T Consensus 417 g~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 417 GFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998776543
No 9
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.63 E-value=4.5e-08 Score=91.76 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=94.6
Q ss_pred CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
+||++. ||+||++++|+++ ++++.|++-.+..- ..+| ++.+ .++. |++++
T Consensus 299 vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~---l~~~--~~~~---------------s~~~------Kfa~g 351 (493)
T PRK15462 299 VNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKE---SVAG--NRTV---------------RIWG------KFALG 351 (493)
T ss_pred ccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHH---HhcC--CCCC---------------CcHH------HHHHH
Confidence 589999 7999999988875 44777776553322 2111 1111 1122 67888
Q ss_pred HHHHHHHHHHhcCcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736 78 GVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR 157 (207)
Q Consensus 78 ~~~~~l~mva~gg~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk 157 (207)
+++.++..+.+. +++.+.++.. + .|.+| ++..|++++++|.+.++.++.+.-+.||++++
T Consensus 352 ~~~~g~~f~~l~---------~~~~~~~~~~------~---~s~~w--l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~ 411 (493)
T PRK15462 352 LGLMSAGFCILT---------LSARWSAMYG------H---SSLPL--MVLGLAVMGFAELFIDPVAMSQITRIEIPGVT 411 (493)
T ss_pred HHHHHHHHHHHH---------HHHhhcCCCC------C---cCHHH--HHHHHHHHHHHHHHHChHHHHHHHHhChHHHH
Confidence 888877765443 1111111110 1 24457 78899999999999999999999999999999
Q ss_pred hHHHHHHHHhh-hhHHHHHHHHHHHhh
Q 045736 158 SLGLSLYLSTL-GVGSILSSFIISAVE 183 (207)
Q Consensus 158 s~~~al~~~~~-~~g~~l~~~lv~~v~ 183 (207)
|..|++|.+.. ++|+.+++.+.....
T Consensus 412 g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 412 GVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999854 799999987666553
No 10
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.17 E-value=1e-06 Score=78.73 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736 78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI 156 (207)
Q Consensus 78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m 156 (207)
.++.+|+++++| |+.|+|++++++|||++++ ..++.++|||||++ +.+|..-.....+.++
T Consensus 35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F~~fY~~-----in~G~~~~~~~~~~i~---------- 96 (372)
T PF00854_consen 35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFFNWFYWG-----INIGSLFSPTLVPYIQ---------- 96 (372)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHHHHHHHH-----HHHHHHHHHHCCCHHH----------
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhHHHHHHH-----HhhhhHhhcccchhhc----------
Confidence 339999999999 9999999999999999775 35677999999965 4444333333334333
Q ss_pred hhHHHHHHHHhhhhHHHHHH
Q 045736 157 RSLGLSLYLSTLGVGSILSS 176 (207)
Q Consensus 157 ks~~~al~~~~~~~g~~l~~ 176 (207)
+..+-...+...+++..++.
T Consensus 97 ~~~~~~~~f~i~~~~~~~~~ 116 (372)
T PF00854_consen 97 QNYGWFLGFGIPAIGMLLAL 116 (372)
T ss_dssp HCS-HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHH
Confidence 23444444555555555543
No 11
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.03 E-value=0.0003 Score=68.33 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736 1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW 77 (207)
Q Consensus 1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~ 77 (207)
||++++ ++++|++++|++.. ++++|++|+.++| .++|...+.+ .+ + ++++|
T Consensus 271 m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp---~l~~~~~~ls---~l------~-------------k~~iG 324 (654)
T TIGR00926 271 MDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYP---AIAKCGTRFT---SL------R-------------KMAVG 324 (654)
T ss_pred hcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHH---HHHhcCCCCC---hH------H-------------HHHHH
Confidence 788888 69999999998864 4999999999999 8877532221 11 2 66888
Q ss_pred HHHHHHHHHHhc
Q 045736 78 GVFEAFAMGALE 89 (207)
Q Consensus 78 ~~~~~l~mva~g 89 (207)
+++++++++.++
T Consensus 325 ~~la~la~~va~ 336 (654)
T TIGR00926 325 GLLAALSFFVAA 336 (654)
T ss_pred HHHHHHHHHHHH
Confidence 888988888776
No 12
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=91.62 E-value=0.19 Score=47.48 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHhc-Ccccccchhhhhhcccccchhhhhhccceeeeehhc-----------------ccchhhhhhhHH
Q 045736 76 LWGVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRI-----------------TTPPSIAVEEEA 137 (207)
Q Consensus 76 i~~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~-----------------~~p~~~l~g~~e 137 (207)
..+++.++..+++| |..|+|++.+.+|++.++|++ +...|+.+|.. .......+|+++
T Consensus 117 ~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aa 192 (498)
T COG3104 117 PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAA 192 (498)
T ss_pred ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 34558899999999 999999999999999988875 44566777854 122236667777
Q ss_pred HHhhhhhhee
Q 045736 138 AFTMVGLQEF 147 (207)
Q Consensus 138 ~f~~v~~~ef 147 (207)
+-+..|+.-|
T Consensus 193 vGm~~gl~~f 202 (498)
T COG3104 193 VGMIIGLVIF 202 (498)
T ss_pred HHHHHHHHHH
Confidence 7666666644
No 13
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=77.88 E-value=1.9 Score=41.65 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=47.0
Q ss_pred eeehhcccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHH-----HhhhhHHHHHHHHHH
Q 045736 120 NWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYL-----STLGVGSILSSFIIS 180 (207)
Q Consensus 120 nw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~-----~~~~~g~~l~~~lv~ 180 (207)
|||+ .+|-=++.|+.-.....+...+...-+|++||..++++.. +-.++|++++..++.
T Consensus 458 n~W~--vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 458 NPWM--VLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred Cchh--eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 5555 7888899999999999999999999999999999888765 345777877655443
No 14
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=67.22 E-value=5.7 Score=36.30 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred hhhhHHHHhhhhhheeeeccccchhhhHHHHHHHH-hhhhHHHHHHHHHH
Q 045736 132 AVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLS-TLGVGSILSSFIIS 180 (207)
Q Consensus 132 l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~-~~~~g~~l~~~lv~ 180 (207)
+.|+.=.+..++.+.+..+.+|+++|+.+++++.. ..++|..+++.+--
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG 359 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG 359 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46777778888999999999999999999999874 56777777665444
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=53.93 E-value=16 Score=32.75 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=40.2
Q ss_pred chhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 128 p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
...++.|+++....++...+.-+..|++.|+..++++....++|..++..+.
T Consensus 101 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888877777766666668999999999999988888777765543
No 16
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=52.30 E-value=18 Score=34.56 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISA 181 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~ 181 (207)
++.|++|.... +...+.|.-.|++-|+.+++++.....+|..++..+.+.
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999888 999999999999999999999999999999999988887
No 17
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=44.67 E-value=37 Score=30.68 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHH-HhhhhHHHHHHHHHHHh
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYL-STLGVGSILSSFIISAV 182 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~-~~~~~g~~l~~~lv~~v 182 (207)
.++.|+++.+.......+..+..|++.|+.++++.. ...++|+.++..+...+
T Consensus 315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355677777766666677777899999999999996 55677777766555433
No 18
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.63 E-value=22 Score=32.46 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=30.1
Q ss_pred HHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 045736 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEK 184 (207)
Q Consensus 138 ~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~ 184 (207)
+|..+++.--.|-.-|..|| .++|++++|.|.++..+++.++-|
T Consensus 196 ~fvl~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaIvR 239 (372)
T KOG2927|consen 196 LFVLVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAIVR 239 (372)
T ss_pred HHHHHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHHHHHH
Confidence 34455555556667788866 578888888888888776664444
No 19
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=42.77 E-value=24 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=46.2
Q ss_pred cchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 127 ~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
....++.|+++.........+..+..|++.|+..++++.....+|..++..+...+.
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777777777788888899999999999999999999998887766554
No 20
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=41.28 E-value=40 Score=23.78 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=38.9
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
.++.|++............-+..|++.|+.+++++.....+|..++..+.....
T Consensus 58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 455666655555555555566788899999999999999999888776665543
No 21
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=38.36 E-value=73 Score=29.71 Aligned_cols=42 Identities=10% Similarity=0.001 Sum_probs=29.7
Q ss_pred HHHHHHHHhc-Ccccccchhhhhhcccccchhhhhhccceeeeehhc
Q 045736 80 FEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRI 125 (207)
Q Consensus 80 ~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~ 125 (207)
+.++.+.++| |..+++..++.+|+|+++++ ++.+.|+++|+.
T Consensus 109 ~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~ 151 (489)
T PRK10207 109 FIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMS 151 (489)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHH
Confidence 3455666777 88999999999999976543 223457777743
No 22
>PRK10489 enterobactin exporter EntS; Provisional
Probab=37.98 E-value=48 Score=29.43 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=32.9
Q ss_pred hhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 133 VEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 133 ~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
.|++.....+....+..+..|++.|+.+++++......|..++..+...+.
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~ 372 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG 372 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 344333333333345567789999999999998777777777665554433
No 23
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=37.58 E-value=45 Score=26.58 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=47.9
Q ss_pred ccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 045736 126 TTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEK 184 (207)
Q Consensus 126 ~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~ 184 (207)
++|.-++.|+++.+.-.+.-.+.-..+.++-|+.-.+++......+...+.++.-.+-+
T Consensus 92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 92 LYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888999999999888887777777778888888898888888888888776665543
No 24
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=37.29 E-value=5.8 Score=37.56 Aligned_cols=54 Identities=24% Similarity=0.138 Sum_probs=44.7
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEK 184 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~ 184 (207)
-++|++|+-.....-.+--+-.|+.-||.+.+++++++.+|+.++-+.-..+.+
T Consensus 129 ~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 129 GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 567999998888888888999999999999999999999999886544344433
No 25
>TIGR00893 2A0114 d-galactonate transporter.
Probab=35.90 E-value=40 Score=28.53 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=38.9
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
-.++.|++.....+....+..+..|++.|+..++++.....+|..++..+..
T Consensus 88 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 88 LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3467777777766666666777789999999999998888888777654443
No 26
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=35.73 E-value=61 Score=27.30 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=39.1
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAV 182 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v 182 (207)
.++.|++.....+......-+..|++.|+.+.+++.....+|..++..+...+
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 308 WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556555555555556666778999999999999999988888887666544
No 27
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=33.83 E-value=46 Score=29.89 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=38.2
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISA 181 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~ 181 (207)
.++.|++..+..........++.|++.++.+++++.....+|..++..+...
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665555555555677899999999999999888888887665553
No 28
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=31.90 E-value=71 Score=26.81 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=47.4
Q ss_pred ccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 126 TTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 126 ~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
++...++.|+++.........+..+..|++-|+..+++......+|..++..+...+.
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 4555678899988888888888888899988999999999999999988776655443
No 29
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=31.49 E-value=1.2e+02 Score=22.44 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=30.1
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNK 201 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~W~~~~lN~ 201 (207)
.|++.|+.-+..+.- ++++.-+..+-..+..++-+ +..+.+.-.+- .++|+|.|=++
T Consensus 37 ~FL~~Gi~~~~~Sl~------------~~~~~~S~llgv~g~s~lWs--I~ElfeQ~kRV--~kGWFP~NPkr 93 (94)
T PF14898_consen 37 IFLLAGIACIIASLF------------VSNVIWSALLGVLGFSCLWS--IGELFEQEKRV--EKGWFPKNPKR 93 (94)
T ss_pred HHHHHHHHHHHHHHH------------HcchHHHHHHHHHHHHHHHh--HHHHHHHHHHH--HcCCCCCCCCC
Confidence 356667655543322 23444455555566666555 23444432221 24699988665
No 30
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=30.82 E-value=62 Score=29.80 Aligned_cols=54 Identities=7% Similarity=-0.034 Sum_probs=43.4
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAV 182 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v 182 (207)
--++.|++.........-+..+..|++.|+.+++++.....+|..++..+...+
T Consensus 121 ~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777889999999999999999999988887766544
No 31
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=30.59 E-value=53 Score=27.59 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=38.9
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILS 175 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~ 175 (207)
.++.|++..+.......+..+..|++.++.+.+++.....+|..++
T Consensus 306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 306 LFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 4567777777788888888999999999999999999988888765
No 32
>PF15345 TMEM51: Transmembrane protein 51
Probab=30.33 E-value=76 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=11.3
Q ss_pred hhccceeeeehhcccchhhhhhhHHHH
Q 045736 113 KLKISFFNWSWRITTPPSIAVEEEAAF 139 (207)
Q Consensus 113 ~~~~s~Fnw~y~~~~p~~~l~g~~e~f 139 (207)
..+...|+..| +|+|++-++
T Consensus 52 ~~ksKt~SVAy-------VLVG~Gv~L 71 (233)
T PF15345_consen 52 NLKSKTFSVAY-------VLVGSGVAL 71 (233)
T ss_pred cccceeEEEEE-------ehhhHHHHH
Confidence 34555666666 566654444
No 33
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=30.25 E-value=57 Score=28.70 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=37.2
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHH-HhhhhHHHHHHHHHHHh
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYL-STLGVGSILSSFIISAV 182 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~-~~~~~g~~l~~~lv~~v 182 (207)
++.|+...+..++...+..++ |++.++.+++++. ...++|..+++.+.-.+
T Consensus 301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777 9999999999985 56676666665544433
No 34
>PRK12382 putative transporter; Provisional
Probab=29.53 E-value=56 Score=28.59 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=35.1
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
++.|++............-++.|++.|+.+.+++.....+|..++..+...+-
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~ 362 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA 362 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544433333333345689999999999999888888888776665443
No 35
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=29.08 E-value=83 Score=27.99 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=35.9
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAV 182 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v 182 (207)
-++.|+++........ ...+..|++.|+.++++.....++|..++..+...+
T Consensus 86 R~l~G~g~~~~~~~~~-~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 86 QLLAALGQPFLLNAFA-PAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred HHHHHhHhHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777764332222 224568889999999999999999888876554443
No 36
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=28.89 E-value=55 Score=29.55 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=45.5
Q ss_pred cchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 127 ~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
+-.-++.|+++....+......-+..|++.|+..++++.....+|..++..+...+.
T Consensus 135 ~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 135 VFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred HHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888877777777778899999999999999988999988877665443
No 37
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=27.47 E-value=57 Score=31.02 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred cchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHh----hhhHHHHHHH
Q 045736 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLST----LGVGSILSSF 177 (207)
Q Consensus 127 ~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~----~~~g~~l~~~ 177 (207)
.+..++.|++-...............|+.+|+-+.+++... .++|+++.+.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~ 365 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGF 365 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678777777777777778889999999999988644 3455555333
No 38
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=26.93 E-value=71 Score=27.96 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=32.2
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
++.|++............-++.|++.|+.+++++.....+|..++..+..
T Consensus 310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 359 (399)
T PRK05122 310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG 359 (399)
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554433333333346789999999999998887777766554444
No 39
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=25.66 E-value=65 Score=27.64 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=36.8
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
-.++.|++..........+..+..|++.|+...++......+|..++..+..
T Consensus 99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776666666666667788888888888888777777666554444
No 40
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=25.55 E-value=1.1e+02 Score=25.79 Aligned_cols=51 Identities=22% Similarity=0.062 Sum_probs=37.4
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
..++.|++..+..++...+..+..|++-|+...+++.....+|..++..+.
T Consensus 98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 148 (365)
T TIGR00900 98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG 148 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777778888888888888877777776654443
No 41
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=24.65 E-value=60 Score=28.97 Aligned_cols=63 Identities=5% Similarity=-0.118 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCC
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDS 193 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~ 193 (207)
+++++++....+.......+.+|++.|+.+++++.....+|..++..+...+-..++..+...
T Consensus 305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~ 367 (400)
T PRK11646 305 CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPE 367 (400)
T ss_pred HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcc
No 42
>PRK12307 putative sialic acid transporter; Provisional
Probab=24.03 E-value=86 Score=27.64 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
.++.|++..........+.-+..|++-|+.+++++....++|..++..+.
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 35666666555555555555667888899999998888888888766544
No 43
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=23.65 E-value=66 Score=27.36 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=34.0
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
++.|++..........+..+..|++-|+..+++......+|..++..+..
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 153 (394)
T TIGR00883 104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153 (394)
T ss_pred HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565555444444455566678888999999888888888777665443
No 44
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=23.52 E-value=93 Score=20.70 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=28.3
Q ss_pred hhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCC
Q 045736 133 VEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGG 188 (207)
Q Consensus 133 ~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~ 188 (207)
+.++|++..+ ||+.+.|+|-+.+++.|.+- .+.++.+++
T Consensus 9 vtiae~li~i-------------m~sf~~a~~~~~i~i~s~~~----~l~~~l~k~ 47 (62)
T PF12133_consen 9 VTIAEILIII-------------MRSFRIAIWNIQIIISSIVR----QLFNPLDKK 47 (62)
T ss_pred hhHHHHHHHH-------------HHHHHHHHHhHHhHHHHHHH----HHhcccccc
Confidence 4566776553 89999999999998877644 466666644
No 45
>TIGR00895 2A0115 benzoate transport.
Probab=23.42 E-value=1.2e+02 Score=25.85 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=33.8
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
++.|++............-+..|++.|+.+.++......+|..++..+.
T Consensus 346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444445555668999999999999888888888776544
No 46
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=23.34 E-value=99 Score=26.58 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=36.7
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
.++.|+++.........+..+..|++-|+.+++++....++|..++..+..
T Consensus 107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766665555556666778888999999888888888777665444
No 47
>PRK11663 regulatory protein UhpC; Provisional
Probab=22.87 E-value=99 Score=27.78 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=32.3
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSF 177 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~ 177 (207)
++.|+++....++......+..|++-|+.+++++.....+|..++..
T Consensus 119 ~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 165 (434)
T PRK11663 119 VLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL 165 (434)
T ss_pred HHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665555555556666778888999999988777777766443
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=22.69 E-value=46 Score=28.49 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=36.4
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
.++.|++.............+..|++.|+.+++++.....+|..++..+..
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 455566555555555555666788888999999998888888887766554
No 49
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=22.46 E-value=1.1e+02 Score=28.16 Aligned_cols=42 Identities=5% Similarity=-0.046 Sum_probs=28.5
Q ss_pred HHHHHHHhc-Ccccccchhhhhhcccccchhhhhhccceeeeehhc
Q 045736 81 EAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRI 125 (207)
Q Consensus 81 ~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~ 125 (207)
.++.+.++| |..+++..++.+|+++.++++ ++.+.|+++|+.
T Consensus 107 ~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~ 149 (475)
T TIGR00924 107 YGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMS 149 (475)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHH
Confidence 344445566 778999999999999765432 244567777744
No 50
>PRK10504 putative transporter; Provisional
Probab=21.44 E-value=1.1e+02 Score=27.42 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=37.2
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAV 182 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v 182 (207)
+++.|++..+..........+..|++.++.+++++.+...+|..++..+...+
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566778999999999999988888877766655533
No 51
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=21.40 E-value=1.1e+02 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=34.7
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
++.|++......+...+..+..|++-|+...++......+|..++..+.
T Consensus 126 ~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 126 MAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766666666777778988899988888766666666555433
No 52
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=21.24 E-value=1e+02 Score=26.88 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=39.3
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv 179 (207)
..++.|++.....+....+.-+..|++-|+.+++++.....+|..++..+.
T Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 133 GRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 346677777766666666666678888899999999988889888887665
No 53
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.01 E-value=1e+02 Score=29.21 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=39.0
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCC
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGG 188 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~ 188 (207)
++.|+.|.-..++..-+.-.--.++=++..+++|....++|+.+++.+...+.+.-+.
T Consensus 142 ~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 142 FLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 6778888765555443322222233466889999999999999999888876553333
No 54
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=20.09 E-value=54 Score=27.25 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=41.0
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
-.++.|++..+.......+..+..|++.|+..+++......+|..++..+...+.
T Consensus 93 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 93 GRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred HHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666777788888999999999999999888876666544
Done!