Query 045736
Match_columns 207
No_of_seqs 172 out of 1403
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 95.0 0.029 9.9E-07 49.7 5.7 59 126-184 408-466 (524)
2 4aps_A DI-OR tripeptide H+ sym 75.5 0.72 2.5E-05 40.1 0.6 58 126-183 389-446 (491)
3 1pw4_A Glycerol-3-phosphate tr 36.2 24 0.00083 29.6 3.3 54 127-180 123-176 (451)
4 4gc0_A D-xylose-proton symport 31.6 83 0.0028 26.7 6.0 53 131-183 134-186 (491)
5 3o7q_A L-fucose-proton symport 29.3 32 0.0011 28.8 2.8 57 127-183 121-177 (438)
6 1pw4_A Glycerol-3-phosphate tr 22.5 84 0.0029 26.1 4.3 40 144-183 367-407 (451)
7 4aps_A DI-OR tripeptide H+ sym 21.8 60 0.0021 27.6 3.2 51 129-179 114-166 (491)
8 2gfp_A EMRD, multidrug resista 17.1 68 0.0023 26.2 2.4 52 129-180 94-145 (375)
9 2voy_D Sarcoplasmic/endoplasmi 14.2 1.6E+02 0.0055 15.6 2.6 18 69-86 1-18 (26)
10 2xut_A Proton/peptide symporte 11.8 79 0.0027 27.2 1.4 48 128-175 114-164 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.03 E-value=0.029 Score=49.73 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=52.5
Q ss_pred ccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 045736 126 TTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEK 184 (207)
Q Consensus 126 ~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~ 184 (207)
+++.+++.|+++.+..+....+..+.+|+++|+.+++++.....+|+.++..+...+..
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66788999999999999999999999999999999999999999999998877765543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=75.46 E-value=0.72 Score=40.14 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=49.0
Q ss_pred ccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 126 TTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 126 ~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
.+..+++.|+++.+.......+..+..|++.|+.+++++.....+|..++..+...+.
T Consensus 389 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 389 LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788898888878888888888999999999999999999999998877665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=36.24 E-value=24 Score=29.55 Aligned_cols=54 Identities=7% Similarity=-0.081 Sum_probs=41.9
Q ss_pred cchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 127 ~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
+.-.++.|++.....++...+..+..|++-|+.+++++....++|..++..+..
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888888777777778888889888999999998888887777655543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=31.61 E-value=83 Score=26.68 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=41.3
Q ss_pred hhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 131 IAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 131 ~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
++.|+++-...+...-+..+.+|++.|+...+++......|..++..+.....
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 56677776666666666777799999999999999999999888776555444
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=29.33 E-value=32 Score=28.75 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=45.7
Q ss_pred cchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVE 183 (207)
Q Consensus 127 ~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~ 183 (207)
+.-.++.|++.....++...+..+..|++-|+.+++++....++|..++..+...+.
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788888777777777778889999999999999999999999887665543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=22.51 E-value=84 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=31.1
Q ss_pred hheeeeccccchhhhHHHHHHHHhhhh-HHHHHHHHHHHhh
Q 045736 144 LQEFFYDHVPTEIRSLGLSLYLSTLGV-GSILSSFIISAVE 183 (207)
Q Consensus 144 ~~ef~y~~aP~~mks~~~al~~~~~~~-g~~l~~~lv~~v~ 183 (207)
...+..+..|++.|+.+++++.....+ |..++..+...+.
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566778999999999999988888 8888776665443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=21.80 E-value=60 Score=27.64 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=35.2
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchh--hhHHHHHHHHhhhhHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEI--RSLGLSLYLSTLGVGSILSSFII 179 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~m--ks~~~al~~~~~~~g~~l~~~lv 179 (207)
-.++.|++..........+..+..|++- |+.+.+++.....+|..++..+.
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 3466788777777777777777778766 77777777777777766654433
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=17.05 E-value=68 Score=26.15 Aligned_cols=52 Identities=15% Similarity=-0.031 Sum_probs=38.5
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
-.++.|++.....+....+..+..|++-|+..++++....++|..++..+..
T Consensus 94 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 94 ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3466777777777777677777778888898999888888888777655443
No 9
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=14.22 E-value=1.6e+02 Score=15.60 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.4
Q ss_pred hhhhHHHHhHHHHHHHHH
Q 045736 69 WLIPQYALWGVFEAFAMG 86 (207)
Q Consensus 69 ~~~~q~~i~~~~~~l~mv 86 (207)
|++-|+.+.+++.+++-+
T Consensus 1 wl~~Ry~viG~yvg~aTv 18 (26)
T 2voy_D 1 WLFFRYMAIGGYVGAATV 18 (26)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 667788888888776655
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=11.81 E-value=79 Score=27.19 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=31.5
Q ss_pred chhhhhhhHHHHhhhhhheeeeccccchhhhHHHHH---HHHhhhhHHHHH
Q 045736 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSL---YLSTLGVGSILS 175 (207)
Q Consensus 128 p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al---~~~~~~~g~~l~ 175 (207)
...++.|+++....+....+.-+..|++.|+..++. +.....+|..++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 335677888777777777777777888877655555 555555555543
Done!