Query 045736
Match_columns 207
No_of_seqs 172 out of 1403
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 08:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045736.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045736hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 40.6 7.7 0.00056 29.3 2.8 52 129-180 318-370 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 21.0 38 0.0028 25.9 3.8 51 130-180 123-173 (447)
3 d2qkwa1 a.8.8.1 (A:29-129) Avi 18.6 23 0.0017 22.7 1.5 26 145-170 26-51 (101)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 13.7 62 0.0045 24.6 3.3 37 145-181 365-402 (447)
5 d1t23a_ d.247.1.1 (A:) Chromos 11.6 30 0.0022 22.8 0.6 15 189-203 69-83 (93)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.6 1.5E+02 0.011 15.0 2.3 15 69-83 16-30 (34)
7 d1nkza_ f.3.1.1 (A:) Light-har 7.3 42 0.0031 19.6 -0.1 36 158-202 13-48 (53)
8 d1ppjj_ f.23.14.1 (J:) Subunit 5.6 34 0.0025 18.2 -1.1 7 198-204 16-22 (33)
9 d1jb0i_ f.23.17.1 (I:) Subunit 5.5 1.7E+02 0.012 15.5 1.9 13 67-79 18-30 (38)
10 d1z67a1 a.259.1.1 (A:3-131) Hy 5.2 2.6E+02 0.019 18.8 3.4 43 154-200 71-113 (129)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=40.63 E-value=7.7 Score=29.27 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=38.6
Q ss_pred hhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHH-HHhhhhHHHHHHHHHH
Q 045736 129 PSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLY-LSTLGVGSILSSFIIS 180 (207)
Q Consensus 129 ~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~-~~~~~~g~~l~~~lv~ 180 (207)
..++.|++..+..+....+..+..|++.|+.+.++. .+..++|..++..+..
T Consensus 318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G 370 (417)
T d1pv7a_ 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777888889999999999975 4566677777665544
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.00 E-value=38 Score=25.91 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=38.8
Q ss_pred hhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHH
Q 045736 130 SIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIIS 180 (207)
Q Consensus 130 ~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~ 180 (207)
-++.|+++.....+...+..+..|++-|+.+++++.....+|..++..+..
T Consensus 123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 466677777666666777777789888999999999888888777655444
No 3
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=18.60 E-value=23 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.5
Q ss_pred heeeeccccchhhhHHHHHHHHhhhh
Q 045736 145 QEFFYDHVPTEIRSLGLSLYLSTLGV 170 (207)
Q Consensus 145 ~ef~y~~aP~~mks~~~al~~~~~~~ 170 (207)
-||..+|+|+++|+--..+|.-+..-
T Consensus 26 hefissqap~slr~~ynnlyshtqrt 51 (101)
T d2qkwa1 26 HEFVSSQAPQSLRNRYNNLYSHTQRT 51 (101)
T ss_dssp HTTTSSSCCSSGGGHHHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHhhHHHHHHhh
Confidence 38999999999999988888766543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.69 E-value=62 Score=24.57 Aligned_cols=37 Identities=14% Similarity=0.028 Sum_probs=24.1
Q ss_pred heeeeccccchhhhHHHHHHHHhhhh-HHHHHHHHHHH
Q 045736 145 QEFFYDHVPTEIRSLGLSLYLSTLGV-GSILSSFIISA 181 (207)
Q Consensus 145 ~ef~y~~aP~~mks~~~al~~~~~~~-g~~l~~~lv~~ 181 (207)
..+.-+..|++.++.++++......+ |..++..+...
T Consensus 365 ~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~ 402 (447)
T d1pw4a_ 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402 (447)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445568999999999988766555 44445444433
No 5
>d1t23a_ d.247.1.1 (A:) Chromosomal protein MC1 {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=11.57 E-value=30 Score=22.75 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCc
Q 045736 189 DGRDSWFANTLNKGH 203 (207)
Q Consensus 189 ~~~~~W~~~~lN~g~ 203 (207)
.+.+.|+|+++++..
T Consensus 69 ~~~P~Wmp~~i~K~n 83 (93)
T d1t23a_ 69 KNRPAWMPEKISKPF 83 (93)
T ss_dssp SCCCSSCCSCEEECC
T ss_pred CCCcccCcchhcccc
Confidence 345689999888764
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.55 E-value=1.5e+02 Score=15.01 Aligned_cols=15 Identities=40% Similarity=0.560 Sum_probs=9.7
Q ss_pred hhhhHHHHhHHHHHH
Q 045736 69 WLIPQYALWGVFEAF 83 (207)
Q Consensus 69 ~~~~q~~i~~~~~~l 83 (207)
|++-.++++++|.++
T Consensus 16 wlafslamlfvfial 30 (34)
T d1xmeb2 16 WLAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777555443
No 7
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.28 E-value=42 Score=19.63 Aligned_cols=36 Identities=22% Similarity=0.535 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCC
Q 045736 158 SLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKG 202 (207)
Q Consensus 158 s~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~W~~~~lN~g 202 (207)
+++..+++-+.++++++... .+.... +|+++-+|.|
T Consensus 13 tVG~Pl~LgsVav~s~~VH~--avl~~T-------tW~~~~~~G~ 48 (53)
T d1nkza_ 13 AIGIPALLGSVTVIAILVHL--AILSHT-------TWFPAYWQGG 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHC-------SHHHHHHHCC
T ss_pred CcCchhHHHHHHHHHHHHHH--HHHhcC-------hhHHHHhcCC
Confidence 36777888888888876543 333332 5888766544
No 8
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.56 E-value=34 Score=18.15 Aligned_cols=7 Identities=43% Similarity=0.890 Sum_probs=3.9
Q ss_pred CCCCCcC
Q 045736 198 TLNKGHL 204 (207)
Q Consensus 198 ~lN~g~L 204 (207)
.+|+|+|
T Consensus 16 ~~NkGkl 22 (33)
T d1ppjj_ 16 HINEGKL 22 (33)
T ss_dssp HHTTTTS
T ss_pred Hhcccch
Confidence 3566654
No 9
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=5.55 E-value=1.7e+02 Score=15.51 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=7.2
Q ss_pred hhhhhhHHHHhHH
Q 045736 67 VWWLIPQYALWGV 79 (207)
Q Consensus 67 ~~~~~~q~~i~~~ 79 (207)
+-|+.|-..++++
T Consensus 18 v~wl~p~vvMglL 30 (38)
T d1jb0i_ 18 VCWLMPTVVMGLL 30 (38)
T ss_dssp HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3466666655533
No 10
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=5.23 E-value=2.6e+02 Score=18.79 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCC
Q 045736 154 TEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLN 200 (207)
Q Consensus 154 ~~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~W~~~~lN 200 (207)
+.+..++.-.-+-.-.....++..+..+|++.|+.. =+|++-|
T Consensus 71 d~l~~lA~q~Gl~~~~~~~~LA~~LP~~Vd~lTP~G----~lP~~~~ 113 (129)
T d1z67a1 71 NAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQG----EVSAQAN 113 (129)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTS----CC--CTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhHHHHhccCCCC----CCCCCcc
Confidence 334455555555556677788888999999999874 3665443
Done!