Query 045737
Match_columns 1823
No_of_seqs 285 out of 452
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 95.7 0.01 3.5E-07 64.8 5.9 58 6-63 70-133 (183)
2 4hg6_A Cellulose synthase subu 54.9 2.7 9.2E-05 54.9 0.2 130 1184-1328 224-361 (802)
3 3kyj_A CHEA3, putative histidi 11.6 7.9E+02 0.027 25.5 9.1 79 783-864 21-99 (144)
4 2lch_A Protein OR38; structura 11.0 1.1E+03 0.036 23.0 9.7 81 783-866 16-96 (113)
5 3bxl_B CAM, voltage-dependent 9.1 1.6E+02 0.0055 23.1 1.9 17 15-31 5-21 (26)
6 4hkr_A Calcium release-activat 8.6 1.4E+03 0.047 25.8 9.8 35 1762-1796 108-143 (214)
7 3arc_E Cytochrome B559 subunit 8.3 2.1E+02 0.0071 27.7 2.8 28 375-403 6-33 (83)
8 4hpq_C ATG17, KLTH0D15642P; au 8.1 8.5E+02 0.029 29.8 8.8 72 14-95 323-394 (413)
9 1ich_A TNF-1, tumor necrosis f 7.9 2.6E+02 0.0088 28.6 3.5 75 990-1065 11-101 (112)
10 2z86_A Chondroitin synthase; G 7.4 1E+02 0.0036 38.3 0.6 136 1182-1328 158-323 (625)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=95.70 E-value=0.01 Score=64.84 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=50.8
Q ss_pred chhhhccccHHHHHHHHHHHHHHHHhhh-chHhhhcHHH-----HHHHHHHHHHHHHHHHHhcC
Q 045737 6 LASRVKKTDAREIQSYYQQYYEHYVRAL-DQGEQADRAQ-----LGKAYQTAGVLFEVLCAVNK 63 (1823)
Q Consensus 6 ~~~~~~~~D~~elq~fY~~y~~~~i~~l-~~~~~~~~~~-----~~k~yqta~vL~eVL~~v~~ 63 (1823)
.+++++.+|+.+.+.+++.|+|++..+| +.+++.+|+. ++|.|+||.+|+|||+.+-+
T Consensus 70 ~K~~~~~~dai~~~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~ 133 (183)
T 2lxl_A 70 LKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133 (183)
T ss_dssp HHHHHCSCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhccchhHHhhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCC
Confidence 3677888999999999999999987776 7788777666 99999999999999999854
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=54.88 E-value=2.7 Score=54.87 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=82.2
Q ss_pred CCCCCCcccceeeecccchhhccCC---CcchHHHHHhhhhhHHHHhhhcCCCCceeecccceeeccC-----ccchhhc
Q 045737 1184 EGKPENQNHAVIFTRGEALQAIDMN---QDNYLEEAFKMRNLLEEFNEDHGVRPPTILGVREHIFTGS-----VSSLAWF 1255 (1823)
Q Consensus 1184 eGKpeNQNhaiiFtRGe~lQ~IDmN---QDnYleEalKmRnlL~Ef~~~~g~~~~~IlG~RE~IFt~~-----vssLa~f 1255 (1823)
.||+.|-|+++=-++||++-++|.+ ..+++++ +++.++++. .+.+++.+-.+..++ .+.....
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~------lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~ 294 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHVPSRDFLAR------TVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRC 294 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHH------HHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTS
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHH------HHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhh
Confidence 3789999999999999999999986 4455554 445665432 345565554444432 2222222
Q ss_pred ccccchhhhhhhhhhhccccceeeecCCcccccccccccCCCccccccccccchhhhcccccccccceeeeee
Q 045737 1256 MSNQETSFVTIGQRVLARPLKVRFHYGHPDVFDRIFHITRGGMSKASRNVNLSEDIFAGFNSVLRRGNVTHHE 1328 (1823)
Q Consensus 1256 ~a~qE~sF~Tl~qR~La~Pl~vr~HYGHPDvfd~~f~~TrGGiSKAsk~i~lsEDIfaG~N~~lRgG~i~h~e 1328 (1823)
. ..+..|-...++.... .+...--|+-=++.|.....-||... -.++||..-++....+|.++.++.
T Consensus 295 ~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 295 P-PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp C-CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECC
T ss_pred h-HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEec
Confidence 2 2223344444444432 23333346656777777777788774 346899999999999999987765
No 3
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=11.60 E-value=7.9e+02 Score=25.53 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHhccccccccccCCchhhHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045737 783 IECYETFKIVLNALVVGENEKRIINIIIKEIESNISKNTFLANFRMGPLPTLCKKVVELVAILKDADPSKKDTVVLLLQD 862 (1823)
Q Consensus 783 ~e~y~s~~~il~~ll~g~~~~~ii~~i~~~i~~~i~~~~ll~~f~~~~lp~l~~~~~~L~~~L~~~~~~~~~~vv~~lq~ 862 (1823)
.|..+.+...|..+-.+..+...+..||+.+-..--.. ..+.+..+-.+..++.++++.+++........++.+|..
T Consensus 21 ~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA---~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~ 97 (144)
T 3kyj_A 21 AQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNS---RVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLF 97 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHH---HhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 44555555566666666667777888888766542222 245677778888999999999998664434455555544
Q ss_pred HH
Q 045737 863 ML 864 (1823)
Q Consensus 863 ~~ 864 (1823)
-+
T Consensus 98 ~~ 99 (144)
T 3kyj_A 98 AS 99 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 4
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=10.99 E-value=1.1e+03 Score=23.01 Aligned_cols=81 Identities=7% Similarity=0.123 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHhccccccccccCCchhhHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045737 783 IECYETFKIVLNALVVGENEKRIINIIIKEIESNISKNTFLANFRMGPLPTLCKKVVELVAILKDADPSKKDTVVLLLQD 862 (1823)
Q Consensus 783 ~e~y~s~~~il~~ll~g~~~~~ii~~i~~~i~~~i~~~~ll~~f~~~~lp~l~~~~~~L~~~L~~~~~~~~~~vv~~lq~ 862 (1823)
.|..+.+...|..+-.+..+...+..+|+.+-..--. -..+.+..+..+..++.++++.++++.......++.++..
T Consensus 16 ~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGs---a~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~ 92 (113)
T 2lch_A 16 KELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEI---TETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKK 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHH---HHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3444555555555544555666667777665443111 1245677788888999999999988765444555555544
Q ss_pred HHHH
Q 045737 863 MLEV 866 (1823)
Q Consensus 863 ~~e~ 866 (1823)
-++.
T Consensus 93 ~~d~ 96 (113)
T 2lch_A 93 KLDM 96 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 5
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=9.08 E-value=1.6e+02 Score=23.09 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 045737 15 AREIQSYYQQYYEHYVR 31 (1823)
Q Consensus 15 ~~elq~fY~~y~~~~i~ 31 (1823)
|=.|++||++++.+..+
T Consensus 5 a~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 5 AMMIMDYYKQSKVKKQR 21 (26)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 34689999999887544
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.63 E-value=1.4e+03 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHhhccccccch
Q 045737 1762 WGSVKAIARGYEYLMGLVIF-VPVGVLAWFPFVSEF 1796 (1823)
Q Consensus 1762 w~~v~~la~~~D~~~G~~l~-~pl~~ls~~Pfv~~~ 1796 (1823)
+...-++|+++-.++|.+|| +-++++.|+-|.+.-
T Consensus 108 ~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~ 143 (214)
T 4hkr_A 108 LHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLS 143 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCC
Confidence 56788999999999999998 667788899888763
No 7
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=8.29 E-value=2.1e+02 Score=27.66 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=22.4
Q ss_pred ecccchhhhchhHHHHHHHHHHHHHHHhh
Q 045737 375 MRSFWHLFRSFDRLWTFYILALQAMLIAG 403 (1823)
Q Consensus 375 ~RSw~Hl~rsF~RIWifhil~fqam~iiA 403 (1823)
.|.|.-+++|. |-|++|....-+++|-.
T Consensus 6 ERpF~dIitsi-RYWvIHsITIPslFiaG 33 (83)
T 3arc_E 6 ERPFSDIITSV-RYWVIHSITIPALFIAG 33 (83)
T ss_dssp SCCHHHHTTSH-HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhee-eeEEEEeeccchHHHhh
Confidence 37788888886 89999999888776653
No 8
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=8.13 E-value=8.5e+02 Score=29.80 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhchHhhhcHHHHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHhhhhccCCCcee
Q 045737 14 DAREIQSYYQQYYEHYVRALDQGEQADRAQLGKAYQTAGVLFEVLCAVNKTEKVEEVAPEIIAAARDVQEKKEIYSPYNI 93 (1823)
Q Consensus 14 D~~elq~fY~~y~~~~i~~l~~~~~~~~~~~~k~yqta~vL~eVL~~v~~~~~ve~~~~e~~~~~~~~~~k~~~~~~YNI 93 (1823)
.+.+|..||..|-.-|=. |=.|-.+++.-+.|+-.+++=..+=|+++.. +-.+..+..-..-+.|.|=+|
T Consensus 323 ~~~~L~~~Y~~f~~aY~~-lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e---------~d~~~Re~F~~~~G~yLP~di 392 (413)
T 4hpq_C 323 QTRNLLDFYANFERSYHN-LLKEVKRRKETAAKLSQILKSCETQLEQINT---------ADLRERQMFLLENGNYLPETI 392 (413)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcccCChhh
Confidence 467788899988666533 3334444455566666666666777776653 233445566678899999999
Q ss_pred ee
Q 045737 94 LP 95 (1823)
Q Consensus 94 lP 95 (1823)
+|
T Consensus 393 wp 394 (413)
T 4hpq_C 393 WP 394 (413)
T ss_dssp ST
T ss_pred CC
Confidence 87
No 9
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=7.89 E-value=2.6e+02 Score=28.57 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=46.9
Q ss_pred CcccHHHHHHhhCc-hhhhhHHHHhhccccccccc---------chhhHHhhhhhhhccc------cceeecccccccHH
Q 045737 990 DGVSIIYYLQKIFP-DEWNNFMERLNCKKESEVWE---------NDENILQLRHWVSLRG------QTLCRTVRGMMYYR 1053 (1823)
Q Consensus 990 d~vs~L~YL~~i~p-~EW~nF~er~~~~~~~~~~~---------~~~~~~~lr~WAS~Rg------QTL~RTV~GmM~Y~ 1053 (1823)
+.-.+|+.+-...| .+|+.|++++|... .++.. .+..-.=||.|..-.| +||..+.+-|=.-.
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse-~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~ 89 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSD-HEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLG 89 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCH-HHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCH-HHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHH
Confidence 34556666666666 89999999999654 21110 1223446899998766 67777777666666
Q ss_pred HHHHHHHhhccc
Q 045737 1054 RALKLQAFLDMA 1065 (1823)
Q Consensus 1054 ~Al~ll~~le~~ 1065 (1823)
-|-+++..++.+
T Consensus 90 ~ae~Ie~~l~~~ 101 (112)
T 1ich_A 90 CLEDIEEALCGP 101 (112)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 666666655543
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=7.43 E-value=1e+02 Score=38.29 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=77.4
Q ss_pred cCCCCCCCcccceeeecccchhhccCC---CcchHHHHHhhhhhHHHHhhhcCCCCceeecccceeeccCccchhhcccc
Q 045737 1182 LGEGKPENQNHAVIFTRGEALQAIDMN---QDNYLEEAFKMRNLLEEFNEDHGVRPPTILGVREHIFTGSVSSLAWFMSN 1258 (1823)
Q Consensus 1182 lGeGKpeNQNhaiiFtRGe~lQ~IDmN---QDnYleEalKmRnlL~Ef~~~~g~~~~~IlG~RE~IFt~~vssLa~f~a~ 1258 (1823)
.|-||+.+-|+|+=.++||++-.+|.. -.++|++++ +.+++. ....++|.+.++-.+..........
T Consensus 158 ~~~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~------~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~- 227 (625)
T 2z86_A 158 YGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYM------ELLAVD---DNVALIGPRKYIDTSKHTYLDFLSQ- 227 (625)
T ss_dssp CSCCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHH------HHHHHC---TTEEEECCEEEECCTTCCHHHHHHS-
T ss_pred CCcchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHH------HHHhcC---CceEEEEeeeeccCcccchhhcccc-
Confidence 466899999999999999999999876 445666544 455443 3467888887765554322211100
Q ss_pred cch------------hhhhh------------h---hhhhccccceeeecCCcccccccccccCCCccccccccccchhh
Q 045737 1259 QET------------SFVTI------------G---QRVLARPLKVRFHYGHPDVFDRIFHITRGGMSKASRNVNLSEDI 1311 (1823)
Q Consensus 1259 qE~------------sF~Tl------------~---qR~La~Pl~vr~HYGHPDvfd~~f~~TrGGiSKAsk~i~lsEDI 1311 (1823)
.+. ..+.. . .+....+..+....|.-=++.|..+..-||....-..- -.||.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~-g~ED~ 306 (625)
T 2z86_A 228 KSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHW-GGEDN 306 (625)
T ss_dssp TTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSC-CCHHH
T ss_pred hHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccccC-Ccchh
Confidence 000 00000 0 00011112222344444455555555567765432211 17999
Q ss_pred hcccccccccceeeeee
Q 045737 1312 FAGFNSVLRRGNVTHHE 1328 (1823)
Q Consensus 1312 faG~N~~lRgG~i~h~e 1328 (1823)
--++-...+|++|.++.
T Consensus 307 dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 307 EFGYRLYREGCYFRSVE 323 (625)
T ss_dssp HHHHHHHHTTCEEEECG
T ss_pred hhhhhHHhCCceEEEcc
Confidence 99999999999887764
Done!