Query 045737
Match_columns 1823
No_of_seqs 285 out of 452
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 08:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045737.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045737hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g8qa_ a.135.1.1 (A:) CD81 ex 11.6 1.1E+02 0.0077 27.9 4.6 18 14-31 7-24 (90)
2 d1twfi1 g.41.3.1 (I:1-49) RBP9 11.0 27 0.002 28.9 0.2 9 242-250 2-10 (49)
3 d1xhba2 c.68.1.17 (A:95-422) P 8.7 61 0.0045 34.0 2.0 33 1185-1217 94-129 (328)
4 d1i5na_ a.24.10.3 (A:) Chemota 8.0 5.1E+02 0.037 23.3 8.3 73 786-861 17-89 (128)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 7.5 1.1E+02 0.008 27.3 2.8 26 376-402 6-31 (82)
6 d1r0va1 c.52.2.1 (A:62-139) Di 7.0 2.3E+02 0.017 23.9 4.5 35 1119-1160 39-73 (78)
7 d1wlna1 b.26.1.2 (A:8-114) Afa 7.0 1.1E+02 0.0082 27.9 2.8 42 1169-1211 21-73 (107)
8 d1tqga_ a.24.10.3 (A:) Chemota 6.2 6.9E+02 0.051 21.6 8.0 63 784-849 16-78 (105)
9 d2yrka1 g.37.1.4 (A:8-55) Zinc 6.2 29 0.0021 28.5 -1.6 12 1236-1247 18-29 (48)
10 d1brta_ c.69.1.12 (A:) Bromope 5.8 5.8E+02 0.042 23.9 7.8 45 1170-1239 52-96 (277)
No 1
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=1.1e+02 Score=27.89 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHh
Q 045737 14 DAREIQSYYQQYYEHYVR 31 (1823)
Q Consensus 14 D~~elq~fY~~y~~~~i~ 31 (1823)
=++|+|+||.+=|++|++
T Consensus 7 V~~ev~~FY~~~Y~~y~~ 24 (90)
T d1g8qa_ 7 IAKDVKQFYDQALQQAVV 24 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 368999999998888875
No 2
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.96 E-value=27 Score=28.91 Aligned_cols=9 Identities=33% Similarity=0.969 Sum_probs=5.5
Q ss_pred cccccchhh
Q 045737 242 ANIRFMPEC 250 (1823)
Q Consensus 242 aNLRFMPEC 250 (1823)
+.+||.|||
T Consensus 2 s~~rFC~eC 10 (49)
T d1twfi1 2 TTFRFCRDC 10 (49)
T ss_dssp CCCCBCSSS
T ss_pred CceecChhc
Confidence 356666666
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.65 E-value=61 Score=33.98 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCCCcccceeeecccchhhccCC---CcchHHHHH
Q 045737 1185 GKPENQNHAVIFTRGEALQAIDMN---QDNYLEEAF 1217 (1823)
Q Consensus 1185 GKpeNQNhaiiFtRGe~lQ~IDmN---QDnYleEal 1217 (1823)
|.+...|.|+=-++||+|=.+|.. ..++||+.+
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHH
Confidence 555667777777888888777766 666666554
No 4
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.99 E-value=5.1e+02 Score=23.31 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHhccccccccccCCchhhHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 045737 786 YETFKIVLNALVVGENEKRIINIIIKEIESNISKNTFLANFRMGPLPTLCKKVVELVAILKDADPSKKDTVVLLLQ 861 (1823)
Q Consensus 786 y~s~~~il~~ll~g~~~~~ii~~i~~~i~~~i~~~~ll~~f~~~~lp~l~~~~~~L~~~L~~~~~~~~~~vv~~lq 861 (1823)
.+.+...|..+-.+..+...+..+++.+-..--.- ..+.+..+-.+..++.++++.++++.......++.++.
T Consensus 17 l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a---~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~ 89 (128)
T d1i5na_ 17 LADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGA---GTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFL 89 (128)
T ss_dssp HHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHH---hhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 34444555555555556667788887765542222 24467788889999999999998865443344444443
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.48 E-value=1.1e+02 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=21.4
Q ss_pred cccchhhhchhHHHHHHHHHHHHHHHh
Q 045737 376 RSFWHLFRSFDRLWTFYILALQAMLIA 402 (1823)
Q Consensus 376 RSw~Hl~rsF~RIWifhil~fqam~ii 402 (1823)
|.|.-+++|. |-|++|....-+++|.
T Consensus 6 RpF~dIitsi-RYWvIHsiTIPslFia 31 (82)
T d2axte1 6 RPFSDIITSV-RYWVIHSITIPALFIA 31 (82)
T ss_dssp SCHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred ccHHhhhhee-eEEEEEeecccHHHHh
Confidence 7788888886 8999999988877664
No 6
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.05 E-value=2.3e+02 Score=23.94 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=27.6
Q ss_pred CCcchhhHHHHHHhCCCcEEEEeeccccccCCccceEEEEee
Q 045737 1119 GDRRATDILNLMVNNPSLRVAYIDEVEEREGGKVQKVYYSVL 1160 (1823)
Q Consensus 1119 ~~~~a~di~~Lm~~~p~LrVAYide~~~~~~~~~~~~yyS~L 1160 (1823)
+.-+.++|..--+++..||.|-+|| | .+.+||.|-
T Consensus 39 ktirmeeiaekarnfdelrlavvde-e------seityfrvy 73 (78)
T d1r0va1 39 KTIRMEEIAEKARNFDELRLAVVDE-E------SEITYFRVY 73 (78)
T ss_dssp SCBCHHHHHHHTTTCSSCEEEEECT-T------CCEEEEEEE
T ss_pred ceeeHHHHHHHhcCchheeeeeecc-c------ceEEEEEEe
Confidence 3446789999999999999999998 2 256787663
No 7
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.04 E-value=1.1e+02 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=28.8
Q ss_pred cceeEeecCCCcccCCCCC-CC----------cccceeeecccchhhccCCCcc
Q 045737 1169 QEIYRIKLPGAVKLGEGKP-EN----------QNHAVIFTRGEALQAIDMNQDN 1211 (1823)
Q Consensus 1169 ~~~yrikLpG~pilGeGKp-eN----------QNhaiiFtRGe~lQ~IDmNQDn 1211 (1823)
..+|+++ +|...+|-|++ +| ..||.|-..++.+.+.|.+..|
T Consensus 21 ~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 21 PKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp CCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred cEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 3556555 45555555432 22 4699999999999999998776
No 8
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.24 E-value=6.9e+02 Score=21.59 Aligned_cols=63 Identities=11% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHhccccccccccCCchhhHHHHHHHHHHhhcCC
Q 045737 784 ECYETFKIVLNALVVGENEKRIINIIIKEIESNISKNTFLANFRMGPLPTLCKKVVELVAILKDAD 849 (1823)
Q Consensus 784 e~y~s~~~il~~ll~g~~~~~ii~~i~~~i~~~i~~~~ll~~f~~~~lp~l~~~~~~L~~~L~~~~ 849 (1823)
|..+.+...|..+-.+..+...+..+++.+-..--.- ..+.+..+-.+..++.++++.+++..
T Consensus 16 e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a---~~~gl~~i~~lah~lE~~l~~~~~~~ 78 (105)
T d1tqga_ 16 EYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMA---GTMGFSSMAKLCHTLENILDKARNSE 78 (105)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCch---hhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455555555555556666777777655432211 23466777888889999999998855
No 9
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=29 Score=28.55 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=8.7
Q ss_pred eeecccceeecc
Q 045737 1236 TILGVREHIFTG 1247 (1823)
Q Consensus 1236 ~IlG~RE~IFt~ 1247 (1823)
+=+-+|+||||.
T Consensus 18 ~~~SvrdHiFsk 29 (48)
T d2yrka1 18 ARLSIRDHIFSK 29 (48)
T ss_dssp SSSCHHHHHTSH
T ss_pred eecchHhhhhhH
Confidence 445678999983
No 10
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=5.84 E-value=5.8e+02 Score=23.86 Aligned_cols=45 Identities=13% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceeEeecCCCcccCCCCCCCcccceeeecccchhhccCCCcchHHHHHhhhhhHHHHhhhcCCCCceeec
Q 045737 1170 EIYRIKLPGAVKLGEGKPENQNHAVIFTRGEALQAIDMNQDNYLEEAFKMRNLLEEFNEDHGVRPPTILG 1239 (1823)
Q Consensus 1170 ~~yrikLpG~pilGeGKpeNQNhaiiFtRGe~lQ~IDmNQDnYleEalKmRnlL~Ef~~~~g~~~~~IlG 1239 (1823)
.+|.+-+||. |+++... -+.+.+.+-++ +..++++. |..+++++|
T Consensus 52 ~vi~~D~~G~-----G~S~~~~-------------~~~~~~~~~~d---l~~~l~~l----~~~~~~lvG 96 (277)
T d1brta_ 52 RVITYDRRGF-----GQSSQPT-------------TGYDYDTFAAD---LNTVLETL----DLQDAVLVG 96 (277)
T ss_dssp EEEEECCTTS-----TTSCCCS-------------SCCSHHHHHHH---HHHHHHHH----TCCSEEEEE
T ss_pred EEEEEeCCCC-----Ccccccc-------------cccchhhhhhh---hhhhhhcc----Ccccccccc
Confidence 6777788864 5554221 12334444333 33444443 677899999
Done!