BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045739
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106
GG + L+ EG++++WG + +LG G+R +P+++ +L + ++ +A GG HS +
Sbjct: 115 GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 107 TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGG--STSAAVTEKGKL 164
T G +++WG G +G+LGHS +++Q P ++EAL V IACG + + +T+ +
Sbjct: 175 TAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
Query: 165 YMWGNAKDSQLGVPG 179
+ WG+ +LG G
Sbjct: 235 WSWGDGDYGKLGRGG 249
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIA--NGGYHSL 104
GG + +T G L+ WG LG D KPKL+ L R++ IA +G +L
Sbjct: 167 GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226
Query: 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
LTDD V+SWG G +G+LG + KVPM I++L V + CG S A+T+ G +
Sbjct: 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAV 286
Query: 165 YMWGNAKDSQLG 176
Y WG +LG
Sbjct: 287 YTWGKGDYHRLG 298
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 51 TMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDG 110
T+ LT++ +W+WG +LGRG G P + +L + ++++ G S+ALT G
Sbjct: 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSG 284
Query: 111 KVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170
V++WG G + +LGH + + P ++ L + V IA G TE G++Y WG+
Sbjct: 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344
Query: 171 KDSQLG 176
+ QLG
Sbjct: 345 DEGQLG 350
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG F++ LT+ G ++ WG + LG G +P+ + L ++I IA G H +
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 331
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAA 157
T+DG+V++WG GQLG T + P ++ AL + V +ACG + + A
Sbjct: 332 CTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 82 PKLLPNLVDVRIIQIA--NGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEA 139
P LL ++ V I ++A +GG H LAL+ +G+V+SWG G+LGH P VIE+
Sbjct: 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES 155
Query: 140 LADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLG 176
L V +A GG+ SA VT G LY WG + +LG
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 58 GQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGY 117
G ++ WG N +LG + P L +R +Q+ G A+T DGK+++ GY
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 118 GGHGQLGHSFTQNQKVPMVIEALADEFVTHIA--CGGSTSAAVTEKGKLYMWGNAKDSQL 175
G G+LG T++ P ++E++ F+ +A GG A++ +G++Y WG A+D +L
Sbjct: 80 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 139
Query: 176 G 176
G
Sbjct: 140 G 140
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 98 NGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAA 157
+ G +L G ++ WG+ GQLG KVP EALA + G T A
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFA 67
Query: 158 VTEKGKLYMWG 168
VT GKLY G
Sbjct: 68 VTADGKLYATG 78
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG + +T EG++ +WG N N +LG GD P+ + +RI +A G H+ A
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 187
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
+T+DG ++ WG+G +G LG ++ VP + + E ++ +ACG + +V+ G LY
Sbjct: 188 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 247
Query: 166 MWGNAKDSQLG 176
+G +K QLG
Sbjct: 248 TYGWSKYGQLG 258
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G T +TE+G L+ WG LG GDR P+ + + ++ +A G H+++
Sbjct: 180 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
++ G ++++G+ +GQLGH ++ +P +EAL++ F++ I+ G + A+T GKLY
Sbjct: 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLY 299
Query: 166 MWGNAKDSQLGVPGLPVVQPCPVE 189
WG K Q+GV G + Q PV+
Sbjct: 300 GWGWNKFGQVGV-GNNLDQCSPVQ 322
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG T+ ++ G L+ +G + +LG GD P L L + I QI+ G H++A
Sbjct: 232 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMA 291
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
LT DGK++ WG+ GQ+G +Q P+ + D+ V ++CG + AVTE+ ++
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351
Query: 166 MWGNAKDSQLGV 177
WG + QLG+
Sbjct: 352 AWGRGTNGQLGI 363
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEG-QLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL 104
CG T+ ++ G ++++WG LG G+ + P + L +RI QIA G H L
Sbjct: 75 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 134
Query: 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
A+T +G+V SWG +GQLG T++ VP I+A + +A G +AAVTE G L
Sbjct: 135 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 194
Query: 165 YMWGNAKDSQLGV 177
Y WG + LG+
Sbjct: 195 YGWGWGRYGNLGL 207
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G ++ L + +WG + +LG GD P L L +I+ + G H++A
Sbjct: 23 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 82
Query: 106 LTDDG-KVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
+ G +V+SWG+G G+LGH + + P+ I+AL + IACG S AVT +G++
Sbjct: 83 YSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEV 142
Query: 165 YMWGNAKDSQLGV 177
WG ++ QLG+
Sbjct: 143 QSWGRNQNGQLGL 155
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%)
Query: 51 TMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDG 110
TM LT +G+L+ WG N ++G G+ + P + D +++Q++ G H+LA+T+
Sbjct: 289 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348
Query: 111 KVFSWGYGGHGQLGHSFTQNQKVPMVIEALA 141
VF+WG G +GQLG + ++ P +IEAL+
Sbjct: 349 NVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 92 RIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG 151
+++ I+ G HS+AL V SWG G GQLGH +++ P + AL + + CG
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 76
Query: 152 GSTSAAVTEKG-KLYMWG 168
+ A ++ G ++Y WG
Sbjct: 77 ADHTVAYSQSGMEVYSWG 94
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNL 88
CG T+ +TE ++ WG +N +LG G+ V PK++ L
Sbjct: 336 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG + +T EG++ +WG N N +LG GD P+ + +RI +A G H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
+T+DG ++ WG+G +G LG ++ VP + + E ++ +ACG + +V+ G LY
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 235
Query: 166 MWGNAKDSQLG 176
+G +K QLG
Sbjct: 236 TYGWSKYGQLG 246
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G T +TE+G L+ WG LG GDR P+ + + ++ +A G H+++
Sbjct: 168 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 227
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
++ G ++++G+ +GQLGH ++ +P +EAL++ F++ I+ G + A+T GKLY
Sbjct: 228 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLY 287
Query: 166 MWGNAKDSQLGVPGLPVVQPCPVE 189
WG K Q+GV G + Q PV+
Sbjct: 288 GWGWNKFGQVGV-GNNLDQCSPVQ 310
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG T+ ++ G L+ +G + +LG GD P L L + I QI+ G H++A
Sbjct: 220 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMA 279
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
LT DGK++ WG+ GQ+G +Q P+ + D+ V ++CG + AVTE+ ++
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 166 MWGNAKDSQLGV 177
WG + QLG+
Sbjct: 340 AWGRGTNGQLGI 351
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEG-QLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL 104
CG T+ ++ G ++++WG LG G+ + P + L +RI QIA G H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
A+T +G+V SWG +GQLG T++ VP I+A + +A G +AAVTE G L
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 165 YMWGNAKDSQLGV 177
Y WG + LG+
Sbjct: 183 YGWGWGRYGNLGL 195
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G ++ L + +WG + +LG GD P L L +I+ + G H++A
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 70
Query: 106 LTDDG-KVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
+ G +V+SWG+G G+LGH + + P+ I+AL + IACG S AVT +G++
Sbjct: 71 YSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEV 130
Query: 165 YMWGNAKDSQLGV 177
WG ++ QLG+
Sbjct: 131 QSWGRNQNGQLGL 143
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 47 GGF-FTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
GGF TM LT +G+L+ WG N ++G G+ + P + D +++Q++ G H+LA
Sbjct: 272 GGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 331
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALA 141
+T+ VF+WG G +GQLG + ++ P +IEAL+
Sbjct: 332 VTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 RIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG 151
+++ I+ G HS+AL V SWG G GQLGH +++ P + AL + + CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 152 GSTSAAVTEKG-KLYMWGNAKDSQLG 176
+ A ++ G ++Y WG +LG
Sbjct: 65 ADHTVAYSQSGMEVYSWGWGDFGRLG 90
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNL 88
CG T+ +TE ++ WG +N +LG G+ V PK++ L
Sbjct: 324 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG + +T EG++ +WG N N +LG GD P+ + +RI +A G H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
+T+DG ++ WG+G +G LG ++ VP + + E ++ +ACG + +V+ G LY
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALY 235
Query: 166 MWGNAKDSQLG 176
+G +K QLG
Sbjct: 236 TYGWSKYGQLG 246
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G T +TE+G L+ WG LG GDR P+ + + ++ +A G H+++
Sbjct: 168 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 227
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
++ G ++++G+ +GQLGH ++ +P +EAL++ F++ I+ G + A+T GKLY
Sbjct: 228 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLY 287
Query: 166 MWGNAKDSQLGVPGLPVVQPCPVE 189
WG K Q+GV G + Q PV+
Sbjct: 288 GWGWNKFGQVGV-GNNLDQCSPVQ 310
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG T+ ++ G L+ +G + +LG GD P L L + I QI+ G H++A
Sbjct: 220 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMA 279
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
LT DGK++ WG+ GQ+G +Q P+ + D+ V ++CG + AVTE+ ++
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 166 MWGNAKDSQLGV 177
WG + QLG+
Sbjct: 340 AWGRGTNGQLGI 351
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEG-QLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL 104
CG T+ ++ G ++++WG LG G+ + P + L +RI QIA G H L
Sbjct: 63 CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
A+T +G+V SWG +GQLG T++ VP I+A + +A G +AAVTE G L
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 165 YMWGNAKDSQLGV 177
Y WG + LG+
Sbjct: 183 YGWGWGRYGNLGL 195
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G ++ L + +WG + +LG GD P L L +I+ + G H++A
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 70
Query: 106 LTDDG-KVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
+ G +V+SWG+G G+LGH + + P+ I+AL + IACG S AVT +G++
Sbjct: 71 YSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEV 130
Query: 165 YMWGNAKDSQLGV 177
WG ++ QLG+
Sbjct: 131 QSWGRNQNGQLGL 143
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%)
Query: 51 TMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDG 110
TM LT +G+L+ WG N ++G G+ + P + D +++Q++ G H+LA+T+
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 336
Query: 111 KVFSWGYGGHGQLGHSFTQNQKVPMVIEALA 141
VF+WG G +GQLG + ++ P +IEAL+
Sbjct: 337 NVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 RIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG 151
+++ I+ G HS+AL V SWG G GQLGH +++ P + AL + + CG
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 64
Query: 152 GSTSAAVTEKG-KLYMWGNAKDSQLG 176
+ A ++ G ++Y WG +LG
Sbjct: 65 ADHTVAYSQSGMEVYSWGWGDFGRLG 90
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNL 88
CG T+ +TE ++ WG +N +LG G+ V PK++ L
Sbjct: 324 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG + +T EG++ +WG N N +LG GD P+ + +RI +A G H+ A
Sbjct: 118 CGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAA 177
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
+T+DG ++ WG+G +G LG ++ VP + + E + +ACG + +V+ G LY
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALY 237
Query: 166 MWGNAKDSQLG 176
+G +K QLG
Sbjct: 238 TYGWSKYGQLG 248
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G T +TE+G L+ WG LG GDR P+ + + + +A G H+++
Sbjct: 170 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTIS 229
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
++ G ++++G+ +GQLGH ++ +P +EAL++ F++ I+ G + A+T GKLY
Sbjct: 230 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLY 289
Query: 166 MWGNAKDSQLGVPGLPVVQPCPVE 189
WG K Q+GV G + Q PV+
Sbjct: 290 GWGWNKFGQVGV-GNNLDQCSPVQ 312
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
CG T+ ++ G L+ +G + +LG GD P L L + I QI+ G H+ A
Sbjct: 222 CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXA 281
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
LT DGK++ WG+ GQ+G +Q P+ + D+ V ++CG + AVTE+ ++
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 341
Query: 166 MWGNAKDSQLGV 177
WG + QLG+
Sbjct: 342 AWGRGTNGQLGI 353
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEG-QLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL 104
CG T+ ++ G ++++WG LG G+ + P + L +RI QIA G H L
Sbjct: 65 CGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
A+T +G+V SWG +GQLG T++ VP I+A + +A G +AAVTE G L
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDL 184
Query: 165 YMWGNAKDSQLGV 177
Y WG + LG+
Sbjct: 185 YGWGWGRYGNLGL 197
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G ++ L + +WG + +LG GD P L L +I+ + G H++A
Sbjct: 13 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 72
Query: 106 LTDDG-KVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKL 164
+ G +V+SWG+G G+LGH + + P+ I+AL + IACG S AVT +G++
Sbjct: 73 YSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEV 132
Query: 165 YMWGNAKDSQLGV 177
WG ++ QLG+
Sbjct: 133 QSWGRNQNGQLGL 145
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106
G T LT +G+L+ WG N ++G G+ + P + D +++Q++ G H+LA+
Sbjct: 275 GARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Query: 107 TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALA 141
T+ VF+WG G +GQLG + ++ P +IEAL+
Sbjct: 335 TERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 92 RIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG 151
+++ I+ G HS+AL V SWG G GQLGH +++ P + AL + + CG
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 66
Query: 152 GSTSAAVTEKG-KLYMWGNAKDSQLG 176
+ A ++ G ++Y WG +LG
Sbjct: 67 ADHTVAYSQSGXEVYSWGWGDFGRLG 92
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNL 88
CG T+ +TE ++ WG +N +LG G+ V PK++ L
Sbjct: 326 CGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDV--RIIQIANGGYHSL 104
GG +VLT+ G ++++G N LGR G + K P+L+D+ + + I+ G HS
Sbjct: 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK--PDLIDLPGKALCISAGDSHSA 140
Query: 105 ALTDDGKVFSWG--YGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKG 162
L +DG+VF+WG HG +G + N++ P I+ + IA G +T G
Sbjct: 141 CLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAG 198
Query: 163 KLYMWGNAKDSQLG 176
K++ G A+ QLG
Sbjct: 199 KVFTVGCAEQGQLG 212
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 60 LWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQ-IANGGYHSLALTDDGKVFSWGYG 118
+W G N+ +L + G + L P +++ I+ IA G +H++ LT D K G
Sbjct: 264 IWATGLNNFKQLAHETK--GKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRP 321
Query: 119 GHGQLGHSFTQNQ-KVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGV 177
+G+LG ++ + P +++ L ++ V+ + CG S AVT GKLY WG+ ++QLGV
Sbjct: 322 EYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGV 380
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 85 LPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQN--QKVPMVIEALAD 142
+P+ VD I+ GG H+L LT G ++S+G G LG +++ + P +I+
Sbjct: 74 IPDAVD-----ISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGK 128
Query: 143 EFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQ 174
I+ G S SA + E G+++ WG+ +DS
Sbjct: 129 ALC--ISAGDSHSACLLEDGRVFAWGSFRDSH 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGD-RVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
G T++LT + + G LG GD + KP ++ L + +I+ + G S A
Sbjct: 302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYA 360
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVI 137
+T DGK++SWG G + QLG ++ P+V+
Sbjct: 361 VTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLL--PNLVDVRIIQIANGGYHS 103
CG + +T +G+L++WG+ N +LG GD +P ++ N ++ + GG H+
Sbjct: 353 CGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHA 412
Query: 104 LALTDDGK 111
+ L K
Sbjct: 413 IFLVKADK 420
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDV--RIIQIANGGYHSL 104
GG T+ L++ GQ++++G N LGR V G +++P V++ +++Q++ G H+
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG--SEMVPGKVELQEKVVQVSAGDSHTA 124
Query: 105 ALTDDGKVFSWG--YGGHGQLGHSFTQNQKVPMV-IEALADEFVTHIACGGSTSAAVTEK 161
ALTDDG+VF WG +G +G + K MV ++ D V +A G +T
Sbjct: 125 ALTDDGRVFLWGSFRDNNGVIG--LLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTAD 182
Query: 162 GKLYMWGNAKDSQLG-VPGL 180
G LY G + QLG VP L
Sbjct: 183 GDLYTLGCGEQGQLGRVPEL 202
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 5/135 (3%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRI--IQIANGGYHS 103
CG +FT ++ EG ++ +G ++ ++LG + P+ L + + + + G +H+
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298
Query: 104 LALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKG 162
+ + +GK +S G +G+LG + + +P +I L V+ +ACG S AVT+ G
Sbjct: 299 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDG 356
Query: 163 KLYMWGNAKDSQLGV 177
+++ WG + QLG
Sbjct: 357 RVFAWGMGTNYQLGT 371
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 55 TEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDV--RIIQIANGGYHSLALTDDGKV 112
TE G + G +LG G+ V K P LV + ++Q GG H++ L+ G+V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKK---PALVSIPEDVVQAEAGGMHTVCLSKSGQV 80
Query: 113 FSWGYGGHGQLGH--SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170
+S+G G LG S ++ VP +E E V ++ G S +AA+T+ G++++WG+
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSF 138
Query: 171 KDSQLGVPGL 180
+D+ GV GL
Sbjct: 139 RDNN-GVIGL 147
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 23/153 (15%)
Query: 47 GGFFTMVLTEEGQLWNWGA--NSNYELGRGDRVGGWKPKLLPNLV--DVRIIQIANGGYH 102
G T LT++G+++ WG+ ++N +G + + K ++P V DV ++++A+G H
Sbjct: 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM---KKSMVPVQVQLDVPVVKVASGNDH 175
Query: 103 SLALTDDGKVFSWGYGGHGQLGH-----------SFTQNQKVPMVIEALADEFVTHIA-- 149
+ LT DG +++ G G GQLG + VP + + H+
Sbjct: 176 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235
Query: 150 ---CGGSTSAAVTEKGKLYMWGNAKDSQLGVPG 179
CG + A++ +G +Y +G + QLG PG
Sbjct: 236 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG 268
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKP-----KLLPNLVDVRIIQIANGG 100
CG +T++G+++ WG +NY+LG G W P K L N V ++ +++GG
Sbjct: 344 CGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRV---VLSVSSGG 400
Query: 101 YHSLALTDD 109
H++ L D
Sbjct: 401 QHTVLLVKD 409
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 102 HSLALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTE 160
H T+ G V + G G GQLG +K P ++ D V GG + +++
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 76
Query: 161 KGKLYMWGNAKDSQLG 176
G++Y +G + LG
Sbjct: 77 SGQVYSFGCNDEGALG 92
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDV--RIIQIANGGYHSL 104
GG T+ L++ GQ++++G N LGR V G +++P V++ +++Q++ G H+
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG--SEMVPGKVELQEKVVQVSAGDSHTA 113
Query: 105 ALTDDGKVFSWG--YGGHGQLGHSFTQNQKVPMV-IEALADEFVTHIACGGSTSAAVTEK 161
ALTDDG+VF WG +G +G + K MV ++ D V +A G +T
Sbjct: 114 ALTDDGRVFLWGSFRDNNGVIG--LLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTAD 171
Query: 162 GKLYMWGNAKDSQLG-VPGL 180
G LY G + QLG VP L
Sbjct: 172 GDLYTLGCGEQGQLGRVPEL 191
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRI--IQIANGGYHS 103
CG +FT ++ EG ++ +G ++ ++LG + P+ L + + + + G +H+
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 287
Query: 104 LALTDDGKVFSWGYGGHGQLGHSFTQNQK-VPMVIEALADEFVTHIACGGSTSAAVTEKG 162
+ + +GK +S G +G+LG +K +P +I L V+ +ACG S AVT+ G
Sbjct: 288 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDG 345
Query: 163 KLYMWGNAKDSQLG 176
+++ WG + QLG
Sbjct: 346 RVFAWGMGTNYQLG 359
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Query: 55 TEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDV--RIIQIANGGYHSLALTDDGKV 112
TE G + G +LG G+ V K P LV + ++Q GG H++ L+ G+V
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKK---PALVSIPEDVVQAEAGGMHTVCLSKSGQV 69
Query: 113 FSWGYGGHGQLGH--SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170
+S+G G LG S ++ VP +E E V ++ G S +AA+T+ G++++WG+
Sbjct: 70 YSFGCNDEGALGRDTSVEGSEMVPGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSF 127
Query: 171 KDSQLGVPGL 180
+D+ GV GL
Sbjct: 128 RDNN-GVIGL 136
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 23/153 (15%)
Query: 47 GGFFTMVLTEEGQLWNWGA--NSNYELGRGDRVGGWKPKLLPNLV--DVRIIQIANGGYH 102
G T LT++G+++ WG+ ++N +G + + K ++P V DV ++++A+G H
Sbjct: 108 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM---KKSMVPVQVQLDVPVVKVASGNDH 164
Query: 103 SLALTDDGKVFSWGYGGHGQLGH-----------SFTQNQKVPMVIEALADEFVTHIA-- 149
+ LT DG +++ G G GQLG + VP + + H+
Sbjct: 165 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 224
Query: 150 ---CGGSTSAAVTEKGKLYMWGNAKDSQLGVPG 179
CG + A++ +G +Y +G + QLG PG
Sbjct: 225 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG 257
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKP-----KLLPNLVDVRIIQIANGG 100
CG +T++G+++ WG +NY+LG G W P K L N V ++ +++GG
Sbjct: 333 CGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRV---VLSVSSGG 389
Query: 101 YHSLALTDD 109
H++ L D
Sbjct: 390 QHTVLLVKD 398
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 102 HSLALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTE 160
H T+ G V + G G GQLG +K P ++ D V GG + +++
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSK 65
Query: 161 KGKLYMWGNAKDSQLG 176
G++Y +G + LG
Sbjct: 66 SGQVYSFGCNDEGALG 81
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 52 MVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQ-IANGGYHSLALTDDG 110
+ L EEG ++ WG +LGR L P +R ++ IA+G H ALT D
Sbjct: 217 LFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDN 276
Query: 111 KVFSWGYGGHGQLGHS--------FTQNQKVPMVIEALADEFVTH-IACGGSTSAAVTEK 161
K+ SWG GQ G S T+ +++ AL D V IA G S +++
Sbjct: 277 KLVSWGLNQFGQCGVSEDVEDGALVTKPKRL-----ALPDNVVIRSIAAGEHHSLILSQD 331
Query: 162 GKLYMWGNAKDSQLGVP 178
G LY G ++G+P
Sbjct: 332 GDLYSCGRLDMFEVGIP 348
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 50 FTMVLTEEGQLWNWGANSNYE--LG-RGDRVGGWK-PKLLPNLVDVRIIQIANGGYHSLA 105
+ L G+++ WG E LG D++ K P +P I+Q+A G H L
Sbjct: 159 MSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILF 218
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMV-IEALADEFVTHIACGGSTSAAVTEKGKL 164
L ++G VF+WG G QLG + ++ + V +IA G + A+T+ KL
Sbjct: 219 LDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKL 278
Query: 165 YMWGNAKDSQLGV 177
WG + Q GV
Sbjct: 279 VSWGLNQFGQCGV 291
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 37/165 (22%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKL---------------------- 84
GG T+ L EE +W+WG N LGR + K
Sbjct: 75 GGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPA 134
Query: 85 ------LPNLVD-VRIIQIANGGYHSLALTDDGKVFSWG--YGGHGQLGHSFTQN----Q 131
P L + +++Q+A S AL +G+V++WG G LG F Q+ Q
Sbjct: 135 KIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILG--FYQDKIKIQ 192
Query: 132 KVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLG 176
K P + + + +A G + E+G ++ WGN + +QLG
Sbjct: 193 KTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG 237
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELG----------RGDRVGGWKPKLLPNLVD--VRII 94
G +++L+++G L++ G +E+G D G + LP ++ +
Sbjct: 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK 380
Query: 95 QIANGGYHSLALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIE--ALADEFVTHIACG 151
+A G +HS+A+ +G +SWG+G +G F + +VP I+ A D + + CG
Sbjct: 381 SVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCG 440
Query: 152 GSTSAA 157
G S +
Sbjct: 441 GQFSVS 446
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 52 MVLTEEGQLWNWGANSNYELGRGDRVGG----WKPKLLPNLVDVRIIQIANGGYHSLALT 107
LT++ +L +WG N + G + V KPK L +V I IA G +HSL L+
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329
Query: 108 DDGKVFSWGYGGHGQLG--------HSFT----QNQKVPMVIEALADEFVTHIACGGSTS 155
DG ++S G ++G +++ + + VP+ + +A G S
Sbjct: 330 QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHS 389
Query: 156 AAVTEKGKLYMWG 168
AV + G Y WG
Sbjct: 390 VAVAQNGIAYSWG 402
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 60 LWNWGANSNYELGRGDRVGGW---KPKLLPNLV--DVRIIQIANGGYHSLALTDDGKVFS 114
++ WG S ELG G +P+L P L + +II A GG H+LAL ++ V+S
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 115 WGYGGHGQLGHSFTQNQK 132
WG G LG T N K
Sbjct: 91 WGCNDVGALGRD-TSNAK 107
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 26/133 (19%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
GG+F + + G++ WGAN N +L +P + IA G YHSLA
Sbjct: 32 AGGYFHGLALKGGKVLGWGANLNGQL------------TMPAATQSGVDAIAAGNYHSLA 79
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
L DG+V +WG GQ + A A V IA G S A+ + GK+
Sbjct: 80 L-KDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAWASYALKD-GKVI 125
Query: 166 MWGNAKDSQLGVP 178
WG+ D Q VP
Sbjct: 126 AWGDDSDGQTTVP 138
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106
GG +T + + G + WG NY + +P + +A G +HSLAL
Sbjct: 150 GGVYTALAVKNGGVIAWG--DNY----------FGQTTVPAEAQSGVDDVAGGIFHSLAL 197
Query: 107 TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYM 166
DGKV +WG + Q VP EAL+ V+ IA G S A+ + GK+
Sbjct: 198 -KDGKVIAWGDNRYKQT--------TVPT--EALSG--VSAIASGEWYSLAL-KNGKVIA 243
Query: 167 WGNAKDSQLGV-PGLPVVQPCP 187
WG+++ + V G+ ++ P
Sbjct: 244 WGSSRTAPSSVQSGVSSIEAGP 265
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 26/133 (19%)
Query: 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLA 105
GG+F + + G++ WGAN N +L +P + IA G YHSLA
Sbjct: 30 AGGYFHGLALKGGKVLGWGANLNGQL------------TMPAATQSGVDAIAAGNYHSLA 77
Query: 106 LTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLY 165
L DG+V +WG GQ + A A V IA G S A+ + GK+
Sbjct: 78 L-KDGEVIAWGGNEDGQ------------TTVPAEARSGVDAIAAGAWASYALKD-GKVI 123
Query: 166 MWGNAKDSQLGVP 178
WG+ D Q VP
Sbjct: 124 AWGDDSDGQTTVP 136
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106
GG +T + + G + WG NY + +P + +A G +HSLAL
Sbjct: 148 GGVYTALAVKNGGVIAWG--DNY----------FGQTTVPAEAQSGVDDVAGGIFHSLAL 195
Query: 107 TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYM 166
DGKV +WG + Q VP EAL+ V+ IA G S A+ + GK+
Sbjct: 196 -KDGKVIAWGDNRYKQT--------TVPT--EALSG--VSAIASGEWYSLAL-KNGKVIA 241
Query: 167 WGNAKDSQLGV-PGLPVVQPCP 187
WG+++ + V G+ ++ P
Sbjct: 242 WGSSRTAPSSVQSGVSSIEAGP 263
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 118 GGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTS--AAVTEKGKLYMWGNAKDSQL 175
GGH G S+ +VP V+ L + I T+ A G++Y W N K+ L
Sbjct: 85 GGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENL 142
Query: 176 GVPG 179
PG
Sbjct: 143 SFPG 146
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 100 GYHSLALTDDGKVFSWGYGGHGQLGHS---FTQNQKVPMVIE 138
G + +AL D VF GGHG++GH FT + +P V E
Sbjct: 631 GKYRVALDSDALVF----GGHGRVGHDVDHFTSPEGMPGVPE 668
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 101 YHSLALTDDGKVFS-WGYGGHGQLGHS-FTQNQKVPMVIEALAD----EFVTHIACGGST 154
++S + VFS W GG+ L S F+QNQK+ + +AL+D + IA G +
Sbjct: 278 FYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTV 337
Query: 155 SAAVTEKGKLYMWGN 169
A+ G + GN
Sbjct: 338 ENAIGGSGSDLLIGN 352
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 101 YHSLALTDDGKVFS-WGYGGHGQLGHS-FTQNQKVPMVIEALAD----EFVTHIACGGST 154
++S + VFS W GG+ L S F+QNQK+ + +AL+D + IA G +
Sbjct: 269 FYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTV 328
Query: 155 SAAVTEKGKLYMWGN 169
A+ G + GN
Sbjct: 329 ENAIGGSGSDLLIGN 343
>pdb|4B0T|A Chain A, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
pdb|4B0T|B Chain B, Structure Of The Pup Ligase Pafa Of The Prokaryotic
Ubiquitin-Like Modification Pathway In Complex With Adp
Length = 493
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 62 NWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGY 117
++G + NY +GR + +L+P L+ ++I A +H L D G+ F GY
Sbjct: 126 SYGCHENYLVGRSMPLKALGKRLMPFLITRQLICGAGRIHHPNPL-DKGESFPLGY 180
>pdb|2DXA|A Chain A, Crystal Structure Of Trans Editing Enzyme Prox From E.Coli
Length = 166
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 114 SWGY--GGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGS 153
S GY GG LG Q +++P +I+A A EF T GG
Sbjct: 102 STGYLVGGISPLG----QKKRLPTIIDAPAQEFATIYVSGGK 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,507,137
Number of Sequences: 62578
Number of extensions: 223869
Number of successful extensions: 547
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 79
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)