Query 045739
Match_columns 189
No_of_seqs 120 out of 1272
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 1.1E-33 2.3E-38 214.8 9.6 179 1-186 78-272 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.8E-30 6.1E-35 206.4 13.7 180 1-187 251-436 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.3E-29 7.3E-34 200.3 14.0 177 1-180 196-377 (476)
4 KOG0783 Uncharacterized conser 99.9 1.8E-26 3.8E-31 193.9 7.8 176 1-187 143-327 (1267)
5 KOG1427 Uncharacterized conser 99.9 1.1E-25 2.4E-30 171.2 9.4 154 28-181 44-200 (443)
6 KOG1428 Inhibitor of type V ad 99.9 1.1E-20 2.3E-25 165.5 14.9 98 91-188 767-868 (3738)
7 KOG0783 Uncharacterized conser 99.8 3.6E-19 7.8E-24 150.4 6.1 136 52-187 136-273 (1267)
8 KOG1428 Inhibitor of type V ad 99.6 3.7E-15 8E-20 131.6 14.0 102 39-140 767-871 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 1.6E-13 3.5E-18 80.0 4.3 50 57-106 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.4 6.9E-13 1.5E-17 77.3 5.7 50 109-158 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.4 5E-13 1.1E-17 68.8 3.9 30 41-70 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.3 3.2E-12 7E-17 65.8 4.3 30 145-174 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.2 8.4E-14 1.8E-18 118.5 -6.5 143 31-173 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.5 4.3E-09 9.4E-14 90.3 -3.9 93 85-177 8-107 (850)
15 KOG0943 Predicted ubiquitin-pr 97.0 8.6E-05 1.9E-09 67.0 -1.8 129 39-171 374-506 (3015)
16 KOG3669 Uncharacterized conser 94.9 1.6 3.4E-05 37.6 13.5 70 39-115 227-299 (705)
17 KOG3669 Uncharacterized conser 93.5 1.9 4.1E-05 37.1 11.3 107 46-166 190-298 (705)
18 PF07569 Hira: TUP1-like enhan 92.2 1.3 2.8E-05 33.6 8.1 30 38-67 12-41 (219)
19 smart00706 TECPR Beta propelle 89.8 0.93 2E-05 23.4 3.8 25 39-63 8-33 (35)
20 PF07569 Hira: TUP1-like enhan 89.5 2.8 6E-05 31.8 7.7 29 90-118 12-40 (219)
21 smart00706 TECPR Beta propelle 86.7 1.6 3.5E-05 22.5 3.6 25 91-115 8-33 (35)
22 KOG0315 G-protein beta subunit 78.3 30 0.00065 27.0 9.3 64 97-171 133-198 (311)
23 PF06739 SBBP: Beta-propeller 76.3 2.9 6.4E-05 22.2 2.2 19 49-67 15-33 (38)
24 TIGR03300 assembly_YfgL outer 72.2 51 0.0011 26.7 9.9 15 153-167 362-376 (377)
25 KOG0943 Predicted ubiquitin-pr 72.2 3.5 7.7E-05 39.0 2.8 81 89-169 372-455 (3015)
26 KOG0307 Vesicle coat complex C 69.8 8.8 0.00019 35.6 4.7 33 145-177 256-291 (1049)
27 PF12341 DUF3639: Protein of u 68.9 12 0.00027 18.3 3.9 25 91-115 2-26 (27)
28 COG4257 Vgb Streptogramin lyas 67.8 36 0.00077 27.1 7.1 108 40-167 94-205 (353)
29 TIGR03548 mutarot_permut cycli 66.5 44 0.00095 26.6 7.9 18 101-119 116-133 (323)
30 KOG0649 WD40 repeat protein [G 65.6 63 0.0014 25.2 10.1 32 38-70 62-93 (325)
31 KOG1274 WD40 repeat protein [G 64.0 1.2E+02 0.0027 28.0 12.6 39 29-67 47-87 (933)
32 PF01436 NHL: NHL repeat; Int 63.8 14 0.0003 17.9 2.9 18 50-67 5-22 (28)
33 PRK05560 DNA gyrase subunit A; 63.6 1.2E+02 0.0027 27.9 11.8 122 43-171 543-671 (805)
34 PHA02790 Kelch-like protein; P 63.6 36 0.00079 28.9 7.2 15 52-66 357-371 (480)
35 PF13418 Kelch_4: Galactose ox 63.4 8.6 0.00019 21.1 2.4 16 49-64 4-19 (49)
36 PHA02713 hypothetical protein; 62.7 48 0.001 28.9 7.8 16 104-119 346-361 (557)
37 PRK14131 N-acetylneuraminic ac 61.9 38 0.00082 27.7 6.8 18 49-66 131-148 (376)
38 TIGR01063 gyrA DNA gyrase, A s 61.6 1.3E+02 0.0029 27.6 12.3 121 44-171 542-669 (800)
39 PRK14131 N-acetylneuraminic ac 61.1 75 0.0016 25.9 8.4 19 48-66 212-230 (376)
40 KOG1034 Transcriptional repres 61.1 25 0.00054 28.5 5.2 56 52-115 323-380 (385)
41 TIGR03548 mutarot_permut cycli 60.8 57 0.0012 25.9 7.6 16 104-119 166-181 (323)
42 PLN03215 ascorbic acid mannose 60.8 58 0.0013 26.9 7.5 62 40-116 161-225 (373)
43 PHA03098 kelch-like protein; P 60.0 75 0.0016 27.2 8.6 16 49-65 382-397 (534)
44 PLN02153 epithiospecifier prot 58.6 94 0.002 24.9 11.0 17 49-66 130-146 (341)
45 KOG1034 Transcriptional repres 58.3 37 0.0008 27.5 5.8 58 104-169 323-382 (385)
46 PHA02713 hypothetical protein; 57.9 35 0.00076 29.7 6.2 20 47-66 341-360 (557)
47 PLN02153 epithiospecifier prot 56.6 1E+02 0.0022 24.7 10.1 16 155-170 308-323 (341)
48 KOG0291 WD40-repeat-containing 55.6 1.6E+02 0.0036 26.8 10.7 73 91-172 146-221 (893)
49 PHA03098 kelch-like protein; P 52.9 70 0.0015 27.4 7.2 17 152-169 381-397 (534)
50 PF03785 Peptidase_C25_C: Pept 51.4 22 0.00047 22.4 2.8 35 143-177 16-51 (81)
51 KOG2106 Uncharacterized conser 49.1 1.8E+02 0.0039 25.3 9.1 27 92-118 248-275 (626)
52 KOG0316 Conserved WD40 repeat- 49.1 1.3E+02 0.0027 23.5 9.9 36 80-115 135-170 (307)
53 PF13938 DUF4213: Domain of un 48.6 26 0.00056 22.2 3.1 24 88-111 9-32 (87)
54 KOG1240 Protein kinase contain 45.7 3E+02 0.0064 26.9 11.5 77 39-120 1049-1130(1431)
55 PF02239 Cytochrom_D1: Cytochr 45.7 1.7E+02 0.0037 24.0 10.2 65 40-117 28-96 (369)
56 PRK02529 petN cytochrome b6-f 43.8 19 0.00042 18.3 1.4 14 163-176 19-32 (33)
57 KOG0316 Conserved WD40 repeat- 43.3 76 0.0017 24.7 5.2 59 47-116 238-297 (307)
58 PF08887 GAD-like: GAD-like do 42.8 25 0.00054 23.6 2.3 22 46-67 77-98 (109)
59 PF04762 IKI3: IKI3 family; I 42.2 3E+02 0.0065 25.9 10.6 37 29-65 413-455 (928)
60 PRK11138 outer membrane biogen 42.1 1.9E+02 0.0042 23.6 10.2 17 152-168 376-392 (394)
61 TIGR01062 parC_Gneg DNA topois 41.2 2.8E+02 0.0061 25.3 12.5 122 45-175 533-659 (735)
62 KOG1900 Nuclear pore complex, 41.2 2.3E+02 0.005 27.5 8.8 64 51-118 92-157 (1311)
63 KOG2055 WD40 repeat protein [G 40.8 1.3E+02 0.0027 25.7 6.5 36 153-189 390-429 (514)
64 PF07312 DUF1459: Protein of u 40.3 19 0.00042 22.5 1.4 12 163-174 57-69 (84)
65 TIGR01062 parC_Gneg DNA topois 40.1 3E+02 0.0064 25.2 11.6 102 47-165 493-600 (735)
66 PF13964 Kelch_6: Kelch motif 39.8 28 0.0006 19.1 1.9 18 49-67 4-21 (50)
67 PF11725 AvrE: Pathogenicity f 39.5 74 0.0016 31.6 5.5 96 47-162 712-815 (1774)
68 PF06204 CBM_X: Putative carbo 39.0 82 0.0018 19.0 4.0 30 143-172 25-54 (66)
69 KOG0293 WD40 repeat-containing 39.0 2.1E+02 0.0046 24.2 7.4 29 144-172 442-472 (519)
70 PF04025 DUF370: Domain of unk 38.9 76 0.0016 19.6 3.8 28 89-116 35-63 (73)
71 KOG0289 mRNA splicing factor [ 38.8 2.5E+02 0.0053 23.9 9.5 69 49-119 350-420 (506)
72 KOG4441 Proteins containing BT 38.2 88 0.0019 27.4 5.6 57 105-169 471-530 (571)
73 PF06462 Hyd_WA: Propeller; I 37.8 42 0.00091 16.9 2.2 13 50-62 2-14 (32)
74 PF07250 Glyoxal_oxid_N: Glyox 37.4 1.4E+02 0.0029 23.2 5.9 75 96-171 114-190 (243)
75 KOG4693 Uncharacterized conser 35.8 1.6E+02 0.0034 23.5 6.0 59 100-169 80-147 (392)
76 KOG2444 WD40 repeat protein [G 35.2 1.1E+02 0.0024 23.5 5.0 64 43-116 65-130 (238)
77 PF07646 Kelch_2: Kelch motif; 34.3 44 0.00096 18.2 2.2 16 50-66 5-20 (49)
78 KOG0289 mRNA splicing factor [ 33.7 3E+02 0.0065 23.4 10.4 67 101-169 350-418 (506)
79 KOG0315 G-protein beta subunit 33.3 2.4E+02 0.0052 22.2 11.2 62 47-119 135-198 (311)
80 TIGR02608 delta_60_rpt delta-6 32.7 56 0.0012 18.9 2.4 19 101-119 3-21 (55)
81 COG2706 3-carboxymuconate cycl 32.5 2.8E+02 0.0061 22.7 8.6 42 147-188 297-340 (346)
82 PLN02772 guanylate kinase 32.1 1.3E+02 0.0028 25.2 5.3 20 150-169 75-94 (398)
83 KOG2444 WD40 repeat protein [G 31.7 1.2E+02 0.0026 23.3 4.7 26 98-123 68-93 (238)
84 KOG0646 WD40 repeat protein [G 30.1 1.8E+02 0.0038 24.8 5.7 67 92-170 83-153 (476)
85 PF07494 Reg_prop: Two compone 29.6 68 0.0015 14.7 2.9 15 102-116 8-22 (24)
86 PF01344 Kelch_1: Kelch motif; 29.4 56 0.0012 17.3 2.1 15 50-64 4-18 (47)
87 PF11725 AvrE: Pathogenicity f 27.4 1.1E+02 0.0023 30.6 4.5 74 35-110 740-815 (1774)
88 KOG4441 Proteins containing BT 27.1 3.3E+02 0.0071 24.0 7.3 22 46-67 321-342 (571)
89 PF13570 PQQ_3: PQQ-like domai 26.7 1E+02 0.0022 15.8 2.9 19 46-64 19-37 (40)
90 PF13854 Kelch_5: Kelch motif 26.6 77 0.0017 16.7 2.3 17 49-66 7-23 (42)
91 PF11399 DUF3192: Protein of u 25.8 50 0.0011 21.9 1.6 24 151-174 78-101 (102)
92 PLN03215 ascorbic acid mannose 25.7 3.9E+02 0.0085 22.2 8.1 62 92-168 161-225 (373)
93 KOG0883 Cyclophilin type, U bo 25.5 61 0.0013 27.0 2.3 25 41-65 107-131 (518)
94 PRK04323 hypothetical protein; 25.3 1.2E+02 0.0025 19.7 3.2 28 89-116 39-67 (91)
95 KOG2280 Vacuolar assembly/sort 25.0 2.4E+02 0.0052 25.8 5.9 69 92-169 85-154 (829)
96 PF13186 SPASM: Iron-sulfur cl 24.6 68 0.0015 18.2 2.0 15 101-115 5-19 (64)
97 PF01403 Sema: Sema domain; I 23.7 64 0.0014 27.0 2.3 20 53-72 67-87 (433)
98 KOG2111 Uncharacterized conser 22.7 4.2E+02 0.0092 21.6 12.0 28 37-65 93-120 (346)
99 TIGR01061 parC_Gpos DNA topois 22.5 6.1E+02 0.013 23.3 11.9 75 42-117 536-616 (738)
100 TIGR03300 assembly_YfgL outer 21.4 4.4E+02 0.0095 21.2 9.4 20 152-171 320-339 (377)
101 PHA00684 hypothetical protein 21.1 71 0.0015 22.0 1.6 16 59-74 1-16 (128)
102 PF05862 IceA2: Helicobacter p 20.1 2E+02 0.0043 16.8 3.5 26 90-115 25-50 (59)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=214.75 Aligned_cols=179 Identities=28% Similarity=0.495 Sum_probs=153.5
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG 79 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 79 (189)
+.|+||+|. .||||.++... ...|+.|..+. .+|++.+||+.|+++||++|.||.||.|++||||.+...+.
T Consensus 78 k~~~wGRNe-kGQLGhgD~k~------~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~ 150 (443)
T KOG1427|consen 78 KCYTWGRNE-KGQLGHGDMKQ------RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNE 150 (443)
T ss_pred ceeecccCc-cCccCccchhh------ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccc
Confidence 479999998 99999997664 56788887775 79999999999999999999999999999999999998876
Q ss_pred cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCc--------------cccEEeccccCccE
Q 045739 80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQ--------------KVPMVIEALADEFV 145 (189)
Q Consensus 80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~--------------~~~~~~~~~~~~~i 145 (189)
...++.+......|..|+||..+++.|+..+.|.++|...|||||++..... ..|..+..+..+.|
T Consensus 151 v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqi 230 (443)
T KOG1427|consen 151 VESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQI 230 (443)
T ss_pred cccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceee
Confidence 6666666667778999999999999999999999999999999998753321 22444556777899
Q ss_pred EEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCC-CCCccc
Q 045739 146 THIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL-PVVQPC 186 (189)
Q Consensus 146 ~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~-~~~~~~ 186 (189)
++++||.+|++++.++++||.||..-+|.||+... +..+|.
T Consensus 231 v~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpR 272 (443)
T KOG1427|consen 231 VKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPR 272 (443)
T ss_pred EEEeccCcceeeecCCccEEEeccccccccccccchhhHHHH
Confidence 99999999999999999999999999999999765 344443
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.97 E-value=2.8e-30 Score=206.44 Aligned_cols=180 Identities=29% Similarity=0.505 Sum_probs=144.1
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCC---
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRV--- 77 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~--- 77 (189)
.||+||+|. .||||..........+.+..|-.+ ..|+.|+||.+|++||+++|++|+||.|.+|||+.+...
T Consensus 251 ~vy~~Gs~q-kgqlG~~~~e~~~~~~lv~~~f~i----~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~ 325 (476)
T COG5184 251 KVYGWGSNQ-KGQLGRPTSERLKLVVLVGDPFAI----RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIG 325 (476)
T ss_pred cEEEecCCc-ccccCCchhhhcccccccCChhhh----hhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccc
Confidence 489999997 999999877765444333222222 248899999999999999999999999999999988211
Q ss_pred -CCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCC--CCCccccEEeccccCccEEEEEeeCCe
Q 045739 78 -GGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSF--TQNQKVPMVIEALADEFVTHIACGGST 154 (189)
Q Consensus 78 -~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~--~~~~~~~~~~~~~~~~~i~~v~~g~~~ 154 (189)
..+.|.....+....|..++++..|.++|..+|.||+||.++.+|+|... ......|.++... ..+.+++||..|
T Consensus 326 a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~ 403 (476)
T COG5184 326 ALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHH 403 (476)
T ss_pred eeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccc--cceEEEEecCcc
Confidence 13345555566677799999999999999999999999999999999887 4444445444433 449999999999
Q ss_pred eEEEecCCCEEEecCCCCCcccCCCCCCCcccc
Q 045739 155 SAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCP 187 (189)
Q Consensus 155 ~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~p 187 (189)
+++.+++|++|.||.+++||||.++.....+.|
T Consensus 404 ~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~p 436 (476)
T COG5184 404 NIARTDDGSVYSWGWGEHGNLGNGPKEADVLVP 436 (476)
T ss_pred ceeeccCCceEEecCchhhhccCCchhhhcccc
Confidence 999999999999999999999998876544444
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.96 E-value=3.3e-29 Score=200.32 Aligned_cols=177 Identities=29% Similarity=0.474 Sum_probs=145.7
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCc
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGW 80 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 80 (189)
+||+||... .+.++.+...+........+|..+. +..|+++++|..|.++|+++|+||.||++..||||.......-
T Consensus 196 ~V~~~gt~r-~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~ 272 (476)
T COG5184 196 RVYSWGTFR-CGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK 272 (476)
T ss_pred cEEEecCcc-ccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc
Confidence 589999997 9999999776666544445555554 4589999999999999999999999999999999998777665
Q ss_pred ceeeeCCCCC-CcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCC----CccccEEeccccCccEEEEEeeCCee
Q 045739 81 KPKLLPNLVD-VRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQ----NQKVPMVIEALADEFVTHIACGGSTS 155 (189)
Q Consensus 81 ~~~~~~~~~~-~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~----~~~~~~~~~~~~~~~i~~v~~g~~~~ 155 (189)
.+.+++.+.. ..|+.|+||.+|+++|+++|+||+||.|.++|++.+... ....|.....++...|..+++|..|+
T Consensus 273 ~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 273 LVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred cccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceE
Confidence 5556664443 347999999999999999999999999999999987221 11223334455667799999999999
Q ss_pred EEEecCCCEEEecCCCCCcccCCCC
Q 045739 156 AAVTEKGKLYMWGNAKDSQLGVPGL 180 (189)
Q Consensus 156 ~~lt~~g~vy~wG~n~~gqlg~~~~ 180 (189)
++|+.+|.+|+||+++.+|||.+.+
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~ 377 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEE 377 (476)
T ss_pred EEEecCceEEEecCCccccccCccc
Confidence 9999999999999999999999874
No 4
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.8e-26 Score=193.93 Aligned_cols=176 Identities=34% Similarity=0.605 Sum_probs=148.9
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccC---CCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKAL---PVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRV 77 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~---~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~ 77 (189)
+||+||.|. +.-||++..+... .|+.+..+ +.-+.+|..+..|++++++.|+||++|.+.-|.+|.++..
T Consensus 143 dvy~wG~N~-N~tLGign~~~~~------~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 143 DVYGWGTNV-NNTLGIGNGKEPS------SPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred ceeEecccc-cccccccCCCCCC------ChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 589999996 9999999877643 35544444 2568889999999999999999999999999999999988
Q ss_pred CCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCC-ccccEEe-----ccccCccEEEEEee
Q 045739 78 GGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQN-QKVPMVI-----EALADEFVTHIACG 151 (189)
Q Consensus 78 ~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~-~~~~~~~-----~~~~~~~i~~v~~g 151 (189)
..+.|.+++.+.+.++.+|+....|+++||++|.||+||.|..+|||..+... ...|..+ +.. ..|+.|++|
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~--~~iIgvaAg 293 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGF--KQIIGVAAG 293 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcch--hhhhhhhcc
Confidence 89999999999999999999999999999999999999999999999875442 2334433 333 259999999
Q ss_pred CCeeEEEecCCCEEEecCCCCCcccCCCCCCCcccc
Q 045739 152 GSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCP 187 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~p 187 (189)
..|+++.++. .||+||.|. ||||+.+....+.+|
T Consensus 294 ~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~P 327 (1267)
T KOG0783|consen 294 KSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTP 327 (1267)
T ss_pred cceeeeeecc-eEEEecccC-ceecCCCCCceeecc
Confidence 9999999975 599999976 999998776666555
No 5
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.93 E-value=1.1e-25 Score=171.20 Aligned_cols=154 Identities=27% Similarity=0.472 Sum_probs=132.1
Q ss_pred cccCcccccCC-CCEEEEEcC--cceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEE
Q 045739 28 LSIPSKVKALP-VPVAAVSCG--GFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL 104 (189)
Q Consensus 28 ~~~p~~~~~~~-~~i~~i~~G--~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~ 104 (189)
...|..+..+. .+|..|+.| ..|+++|+-+|+.|.||.|..||||+++......|+.++.+...+|++.+||++||+
T Consensus 44 L~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl 123 (443)
T KOG1427|consen 44 LVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTL 123 (443)
T ss_pred cccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEE
Confidence 34566665553 556677666 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCCC
Q 045739 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLP 181 (189)
Q Consensus 105 ~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~ 181 (189)
+|+++|.||.||.|.+||||.++.........+......+|..|+||.++++.|+..++|..+|.-.+||||++.+.
T Consensus 124 ~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~ 200 (443)
T KOG1427|consen 124 VLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN 200 (443)
T ss_pred EEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcch
Confidence 99999999999999999999987654433233333344669999999999999999999999999999999998653
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-20 Score=165.50 Aligned_cols=98 Identities=26% Similarity=0.467 Sum_probs=89.9
Q ss_pred CcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCC
Q 045739 91 VRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 91 ~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
.++.+|+||.+|+++|.+|++||.||+|.+||||.++......|..+..+.+..|++|++|.+|++++..||+||.+|.-
T Consensus 767 vkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF 846 (3738)
T KOG1428|consen 767 VKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAF 846 (3738)
T ss_pred eeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccc
Confidence 47999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCCcccCCCC----CCCccccC
Q 045739 171 KDSQLGVPGL----PVVQPCPV 188 (189)
Q Consensus 171 ~~gqlg~~~~----~~~~~~p~ 188 (189)
..|||+-+-- ....|.||
T Consensus 847 ~KGQL~RP~~e~~~WNA~Pe~v 868 (3738)
T KOG1428|consen 847 GKGQLARPAGEKAGWNAIPEKV 868 (3738)
T ss_pred cCccccCccccccccccCCCcC
Confidence 9999987632 25666665
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.77 E-value=3.6e-19 Score=150.40 Aligned_cols=136 Identities=27% Similarity=0.440 Sum_probs=121.9
Q ss_pred EEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCC--CCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCC
Q 045739 52 MVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLV--DVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQ 129 (189)
Q Consensus 52 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~--~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~ 129 (189)
.+++..+.||+||.|...-||++.......|..+..+. +.-+.+|+.+.+|++++++.|.||+||...-|.+|+++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 35777899999999999999999988888888888665 4568889999999999999999999999999999999888
Q ss_pred CccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCCCCCcccc
Q 045739 130 NQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCP 187 (189)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~~p 187 (189)
..+.|.+++.+....|.+|++...|+++||+.|.||+||.|..+|||+-+.......|
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p 273 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDP 273 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCch
Confidence 8888999999999999999999999999999999999999999999997765444444
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.64 E-value=3.7e-15 Score=131.58 Aligned_cols=102 Identities=31% Similarity=0.600 Sum_probs=91.2
Q ss_pred CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 39 VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
.++.+|+||..|+++|.+|++||.+|+|..||||.++......|+++..+++..+++|++|.+||+++..||.||.||..
T Consensus 767 vkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF 846 (3738)
T KOG1428|consen 767 VKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAF 846 (3738)
T ss_pred eeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCc---cccEEeccc
Q 045739 119 GHGQLGHSFTQNQ---KVPMVIEAL 140 (189)
Q Consensus 119 ~~gq~g~~~~~~~---~~~~~~~~~ 140 (189)
..|||+.+.-+.. ..|.++..+
T Consensus 847 ~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 847 GKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred cCccccCccccccccccCCCcCCCC
Confidence 9999997644332 235555543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.43 E-value=1.6e-13 Score=79.99 Aligned_cols=50 Identities=42% Similarity=0.736 Sum_probs=46.8
Q ss_pred CCcEEEecCCCCCccC-CCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEE
Q 045739 57 EGQLWNWGANSNYELG-RGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106 (189)
Q Consensus 57 ~g~v~~~G~n~~gqlg-~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l 106 (189)
||+||+||.|.+|||| ..+......|++++.+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7777788999999999999999999999999986
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.40 E-value=6.9e-13 Score=77.26 Aligned_cols=50 Identities=36% Similarity=0.686 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCCCCC-CCCCCCccccEEeccccCccEEEEEeeCCeeEEE
Q 045739 109 DGKVFSWGYGGHGQLG-HSFTQNQKVPMVIEALADEFVTHIACGGSTSAAV 158 (189)
Q Consensus 109 ~g~vy~~G~~~~gq~g-~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~l 158 (189)
||+||+||.|.++||| .........|.+++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7788888999999999989999999999999986
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.39 E-value=5e-13 Score=68.84 Aligned_cols=30 Identities=37% Similarity=0.913 Sum_probs=26.0
Q ss_pred EEEEEcCcceeEEEeCCCcEEEecCCCCCc
Q 045739 41 VAAVSCGGFFTMVLTEEGQLWNWGANSNYE 70 (189)
Q Consensus 41 i~~i~~G~~h~~~lt~~g~v~~~G~n~~gq 70 (189)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.32 E-value=3.2e-12 Score=65.79 Aligned_cols=30 Identities=43% Similarity=0.924 Sum_probs=26.0
Q ss_pred EEEEEeeCCeeEEEecCCCEEEecCCCCCc
Q 045739 145 VTHIACGGSTSAAVTEKGKLYMWGNAKDSQ 174 (189)
Q Consensus 145 i~~v~~g~~~~~~lt~~g~vy~wG~n~~gq 174 (189)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.4e-14 Score=118.51 Aligned_cols=143 Identities=36% Similarity=0.611 Sum_probs=122.2
Q ss_pred CcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeC-
Q 045739 31 PSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTD- 108 (189)
Q Consensus 31 p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~- 108 (189)
|+.+..+. .++.+++||.+|.++++..|++|.||.|.+||++++.......|.+++.+.+....+|++|..|+.+++.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~ 84 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSH 84 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhc
Confidence 44443333 5899999999999999999999999999999999985444444899999999999999999998877766
Q ss_pred ------CCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEec-CCCEEEecCCCCC
Q 045739 109 ------DGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTE-KGKLYMWGNAKDS 173 (189)
Q Consensus 109 ------~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~-~g~vy~wG~n~~g 173 (189)
+|.++.+|....+|++++.......|..........+..++|+..|+.+... -++.|.+|.+..|
T Consensus 85 ~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 85 TVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 9999999999999999977777777777777777889999999999988755 5899999998887
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.3e-09 Score=90.33 Aligned_cols=93 Identities=30% Similarity=0.539 Sum_probs=79.8
Q ss_pred eCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEec----
Q 045739 85 LPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTE---- 160 (189)
Q Consensus 85 ~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~---- 160 (189)
+..+...++.++.||.+|+++++..|++++||.+.++|++.+.......|..+..+.+.+...|++|.+|+++++.
T Consensus 8 ~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~ 87 (850)
T KOG0941|consen 8 VLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVL 87 (850)
T ss_pred HHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhh
Confidence 3344446799999999999999999999999999999999874333333888888888899999999999988776
Q ss_pred ---CCCEEEecCCCCCcccC
Q 045739 161 ---KGKLYMWGNAKDSQLGV 177 (189)
Q Consensus 161 ---~g~vy~wG~n~~gqlg~ 177 (189)
.+..+.+|+...+|+|.
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h 107 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGH 107 (850)
T ss_pred cchhccccccCCcccccccc
Confidence 99999999999999998
No 15
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=8.6e-05 Score=66.99 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=88.7
Q ss_pred CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCC--CCCCCcceee-eCCCCCCcEEEEEcCCceEEEEeCCCCEEEE
Q 045739 39 VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRG--DRVGGWKPKL-LPNLVDVRIIQIANGGYHSLALTDDGKVFSW 115 (189)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~--~~~~~~~~~~-~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~ 115 (189)
.++..|.+-++..++|..+|++|.|-+...--+... ...+...|.. .-.+.+++|+.+++..-..-++|++|+|-.|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 689999999999999999999999998776544331 1222222221 2235578999999999999999999999998
Q ss_pred ecCCCCCCCCCCCCCc-cccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCC
Q 045739 116 GYGGHGQLGHSFTQNQ-KVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 116 G~~~~gq~g~~~~~~~-~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~ 171 (189)
=+- +|.+..... .....-....++.+++..|...|.++..++..||.||---
T Consensus 454 lDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 454 LDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred Hhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 433 222211111 1111111234466777888899999999999999999643
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.90 E-value=1.6 Score=37.60 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=51.2
Q ss_pred CCEEEEEcCc-ceeEEEeCCCcEE-EecCCCCCccCCCCCCCCcceeeeCCCCCC-cEEEEEcCCceEEEEeCCCCEEEE
Q 045739 39 VPVAAVSCGG-FFTMVLTEEGQLW-NWGANSNYELGRGDRVGGWKPKLLPNLVDV-RIIQIANGGYHSLALTDDGKVFSW 115 (189)
Q Consensus 39 ~~i~~i~~G~-~h~~~lt~~g~v~-~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~-~i~~v~~g~~~t~~l~~~g~vy~~ 115 (189)
..+..|++|. .-..+++.+|.|| --|-.++++.|. .+. .|+..... .++.|+.|....-+|+.+|++|.-
T Consensus 227 t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd-----sWk--dI~tP~~a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 227 TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD-----SWK--DIVTPRQALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CccceEeecCcceEEEEeeCCcEEEEecccccCCCCc-----hhh--hccCcccccceEEEEeccceEEEEecCCcEEEE
Confidence 3789999999 7888999999987 456666555543 222 22222221 289999999999999999999875
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.53 E-value=1.9 Score=37.11 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=67.8
Q ss_pred cCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC-ceEEEEeCCCCEE-EEecCCCCCC
Q 045739 46 CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG-YHSLALTDDGKVF-SWGYGGHGQL 123 (189)
Q Consensus 46 ~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~-~~t~~l~~~g~vy-~~G~~~~gq~ 123 (189)
.|..-..||..+|.+|.=- |..-.......+ ..+... ..+.+|++|. .-..+|+.||.|+ =-|-..+.+.
T Consensus 190 ~g~~~awAI~s~Gd~y~Rt----Gvs~~~P~GraW--~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRT----GVSVDRPCGRAW--KVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEec----cccCCCCCCcee--eecCCC--CccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 6777888999999998621 111111111111 111111 1588999999 5556999999975 4676666676
Q ss_pred CCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEE
Q 045739 124 GHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYM 166 (189)
Q Consensus 124 g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~ 166 (189)
|..=. +..+|. ... .++.|+.|..-..+|+++|.+|.
T Consensus 262 GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 262 GDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred Cchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEE
Confidence 65422 222222 211 18999999999999999999985
No 18
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.24 E-value=1.3 Score=33.62 Aligned_cols=30 Identities=27% Similarity=0.695 Sum_probs=26.3
Q ss_pred CCCEEEEEcCcceeEEEeCCCcEEEecCCC
Q 045739 38 PVPVAAVSCGGFFTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 38 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~ 67 (189)
+.++..+.|-..+.++||.+|.+|+|-...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 458888999999999999999999997554
No 19
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=89.76 E-value=0.93 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCEEEEEcCc-ceeEEEeCCCcEEEe
Q 045739 39 VPVAAVSCGG-FFTMVLTEEGQLWNW 63 (189)
Q Consensus 39 ~~i~~i~~G~-~h~~~lt~~g~v~~~ 63 (189)
.++++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4899999999 999999999999963
No 20
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.48 E-value=2.8 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 90 DVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 90 ~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
+.++..+.|...+.++||++|.+|+|=-.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 45788899999999999999999999443
No 21
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=86.72 E-value=1.6 Score=22.47 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=21.9
Q ss_pred CcEEEEEcCC-ceEEEEeCCCCEEEE
Q 045739 91 VRIIQIANGG-YHSLALTDDGKVFSW 115 (189)
Q Consensus 91 ~~i~~v~~g~-~~t~~l~~~g~vy~~ 115 (189)
.++++|++|. ....+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5799999999 888899999999864
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=78.34 E-value=30 Score=27.01 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=38.5
Q ss_pred EcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCC--eeEEEecCCCEEEecCCC
Q 045739 97 ANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGS--TSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 97 ~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~--~~~~lt~~g~vy~wG~n~ 171 (189)
.-...+-+.-+.+|+|++|-.... ...-.++++. +..|.+++...+ ..++.++.|..|+|-.-.
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~----------~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGEN----------SCTHELIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCC----------ccccccCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 334455556678899999955432 1111122221 245777766655 446678899999998643
No 23
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=76.32 E-value=2.9 Score=22.16 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=15.9
Q ss_pred ceeEEEeCCCcEEEecCCC
Q 045739 49 FFTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n~ 67 (189)
.+.++++.+|++|+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 4678999999999999643
No 24
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=72.19 E-value=51 Score=26.69 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=10.8
Q ss_pred CeeEEEecCCCEEEe
Q 045739 153 STSAAVTEKGKLYMW 167 (189)
Q Consensus 153 ~~~~~lt~~g~vy~w 167 (189)
++.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 456677778888875
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.16 E-value=3.5 Score=38.95 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=58.7
Q ss_pred CCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCC--CCCccccE-EeccccCccEEEEEeeCCeeEEEecCCCEE
Q 045739 89 VDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSF--TQNQKVPM-VIEALADEFVTHIACGGSTSAAVTEKGKLY 165 (189)
Q Consensus 89 ~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~--~~~~~~~~-~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy 165 (189)
...++..|.+-..-.++|..+|++|.|-..+...+-.+- ..+..-|. ..-.+.+++|+.+++..-..-++|++|.+-
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 346788888888888899999999999887655544321 12222222 223456688999999999999999999999
Q ss_pred EecC
Q 045739 166 MWGN 169 (189)
Q Consensus 166 ~wG~ 169 (189)
.|=.
T Consensus 452 sWlD 455 (3015)
T KOG0943|consen 452 SWLD 455 (3015)
T ss_pred hHHh
Confidence 8854
No 26
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.77 E-value=8.8 Score=35.57 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=23.4
Q ss_pred EEEE-EeeCCeeEEEec--CCCEEEecCCCCCcccC
Q 045739 145 VTHI-ACGGSTSAAVTE--KGKLYMWGNAKDSQLGV 177 (189)
Q Consensus 145 i~~v-~~g~~~~~~lt~--~g~vy~wG~n~~gqlg~ 177 (189)
|.++ +|..+-.++|+. |+++++|+-|+.-+|+-
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 4444 677776666664 89999999999555543
No 27
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=68.87 E-value=12 Score=18.27 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=20.8
Q ss_pred CcEEEEEcCCceEEEEeCCCCEEEE
Q 045739 91 VRIIQIANGGYHSLALTDDGKVFSW 115 (189)
Q Consensus 91 ~~i~~v~~g~~~t~~l~~~g~vy~~ 115 (189)
+.|..|++|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5789999999999999998866543
No 28
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.85 E-value=36 Score=27.10 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred CEEEEEcC---cceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 40 PVAAVSCG---GFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 40 ~i~~i~~G---~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
+++.+.-| .-|.+++..||..|.+-... .......+.....-.+++ .+..-++--+.+.+.+|+||.-|
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp-------~~~a~~nlet~vfD~~G~lWFt~ 165 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP-------LEHADANLETAVFDPWGNLWFTG 165 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc-------cccCCCcccceeeCCCccEEEee
Confidence 45555444 45888999999999876543 221111111111111111 33344556677889999999998
Q ss_pred cCC-CCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEe
Q 045739 117 YGG-HGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMW 167 (189)
Q Consensus 117 ~~~-~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~w 167 (189)
.+. +|.|.-....... .... .-+.-+.++.|-+|+||.-
T Consensus 166 q~G~yGrLdPa~~~i~v----fpaP--------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 166 QIGAYGRLDPARNVISV----FPAP--------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ccccceecCcccCceee----eccC--------CCCCCcceEECCCCcEEEE
Confidence 863 3333211111100 0111 1334566788889999965
No 29
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.53 E-value=44 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=11.9
Q ss_pred ceEEEEeCCCCEEEEecCC
Q 045739 101 YHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~G~~~ 119 (189)
.|++++ -+++||++|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 344443 467999998753
No 30
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=65.64 E-value=63 Score=25.25 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCEEEEEcCcceeEEEeCCCcEEEecCCCCCc
Q 045739 38 PVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYE 70 (189)
Q Consensus 38 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gq 70 (189)
+..|-+++.-+.|-+. --+|.||.|=+++.-.
T Consensus 62 dgpiy~~~f~d~~Lls-~gdG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLS-GGDGLVYGWEWNEEEE 93 (325)
T ss_pred CCCeeeeeeehhheee-ccCceEEEeeehhhhh
Confidence 3567777777666554 3459999999988754
No 31
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=63.98 E-value=1.2e+02 Score=27.99 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=27.2
Q ss_pred ccCcccccCCCCEEEEEcCcceeEEEeCCCcE--EEecCCC
Q 045739 29 SIPSKVKALPVPVAAVSCGGFFTMVLTEEGQL--WNWGANS 67 (189)
Q Consensus 29 ~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v--~~~G~n~ 67 (189)
..|+.+......|..|+|-..|.+.=++++.| |.+++..
T Consensus 47 e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 45665554456899999999988888888775 5555443
No 32
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=63.79 E-value=14 Score=17.87 Aligned_cols=18 Identities=6% Similarity=0.300 Sum_probs=14.1
Q ss_pred eeEEEeCCCcEEEecCCC
Q 045739 50 FTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 50 h~~~lt~~g~v~~~G~n~ 67 (189)
|.++++.+|+||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678889999999876443
No 33
>PRK05560 DNA gyrase subunit A; Validated
Probab=63.63 E-value=1.2e+02 Score=27.86 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=63.7
Q ss_pred EEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC-----ceEEEEeCCCCEEEEec
Q 045739 43 AVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG-----YHSLALTDDGKVFSWGY 117 (189)
Q Consensus 43 ~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~-----~~t~~l~~~g~vy~~G~ 117 (189)
..+....+.+++|+.|++|..=...-...+..... ......+....+++|+.+.+-. ...++++.+|.+.---.
T Consensus 543 ~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G-~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 543 FVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARG-RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred EEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCC-eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 34455667888999999998755433322211111 1111123344567777776643 35678899998764433
Q ss_pred CCCCCCCCCCCCCccccEEeccccCccEEEEEe--eCCeeEEEecCCCEEEecCCC
Q 045739 118 GGHGQLGHSFTQNQKVPMVIEALADEFVTHIAC--GGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 118 ~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~--g~~~~~~lt~~g~vy~wG~n~ 171 (189)
.++-....+ -....+++ .+..+..+.. ...+.+++|++|++|.+=..+
T Consensus 622 ~~~~~~~r~----G~~~ikLk--e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~e 671 (805)
T PRK05560 622 SEFSNIRSN----GIIAINLD--EGDELIGVRLTDGDDDILLATKNGKAIRFPESD 671 (805)
T ss_pred HHhhhcccC----CceeeccC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh
Confidence 322111000 00011111 2223443333 345688999999998765443
No 34
>PHA02790 Kelch-like protein; Provisional
Probab=63.56 E-value=36 Score=28.94 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=10.7
Q ss_pred EEEeCCCcEEEecCC
Q 045739 52 MVLTEEGQLWNWGAN 66 (189)
Q Consensus 52 ~~lt~~g~v~~~G~n 66 (189)
.+..-+|+||+.|-.
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344557899999853
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=63.36 E-value=8.6 Score=21.08 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=11.5
Q ss_pred ceeEEEeCCCcEEEec
Q 045739 49 FFTMVLTEEGQLWNWG 64 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G 64 (189)
.|+++...+++||.+|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 6888888789999999
No 36
>PHA02713 hypothetical protein; Provisional
Probab=62.65 E-value=48 Score=28.89 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.3
Q ss_pred EEEeCCCCEEEEecCC
Q 045739 104 LALTDDGKVFSWGYGG 119 (189)
Q Consensus 104 ~~l~~~g~vy~~G~~~ 119 (189)
.+..-+|+||++|-..
T Consensus 346 ~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 346 SLAVIDDTIYAIGGQN 361 (557)
T ss_pred eEEEECCEEEEECCcC
Confidence 3444578999998753
No 37
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=61.87 E-value=38 Score=27.72 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=12.9
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|+.+...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 356555467999999954
No 38
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=61.55 E-value=1.3e+02 Score=27.61 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=60.8
Q ss_pred EEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC-----CceEEEEeCCCCEEEEecC
Q 045739 44 VSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG-----GYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 44 i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g-----~~~t~~l~~~g~vy~~G~~ 118 (189)
.+...++.+++|+.|++|..=...--..+.... .......+....+++|+.+.+- ....+++|.+|.+.-.=..
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAK-GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCC-CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 445566788899999999984333222221111 1111112334456677776552 2356788899877644333
Q ss_pred CCCCCCCCCCCCccccEEeccccCccEEEEEe--eCCeeEEEecCCCEEEecCCC
Q 045739 119 GHGQLGHSFTQNQKVPMVIEALADEFVTHIAC--GGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 119 ~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~--g~~~~~~lt~~g~vy~wG~n~ 171 (189)
++-.... .-....++. .+..+..+.. ...+.+++|++|++|.+=.++
T Consensus 621 ~~~~~~r----~G~~aiklk--e~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~e 669 (800)
T TIGR01063 621 EFSNIRS----NGIIAIKLD--DGDELISVRLTSGDDEVMLGSKNGKAVRFPEED 669 (800)
T ss_pred Hhhhhcc----CCcccccCC--CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh
Confidence 2211000 000000111 1222443322 335688999999998765443
No 39
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=61.09 E-value=75 Score=25.95 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=12.5
Q ss_pred cceeEEEeCCCcEEEecCC
Q 045739 48 GFFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 48 ~~h~~~lt~~g~v~~~G~n 66 (189)
..+..++..+++||..|-.
T Consensus 212 ~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 212 TAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred CCcceEEEECCEEEEEeee
Confidence 3344445557899999953
No 40
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=61.08 E-value=25 Score=28.48 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred EEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEE--EEeCCCCEEEE
Q 045739 52 MVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL--ALTDDGKVFSW 115 (189)
Q Consensus 52 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~--~l~~~g~vy~~ 115 (189)
++....|+||+|-.... .+...++......+..|++.+......+ ++.+++.||-|
T Consensus 323 a~gnq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred hhccCCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 34567899999975432 1113345555666677888887776554 55788999888
No 41
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.79 E-value=57 Score=25.88 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=11.0
Q ss_pred EEEeCCCCEEEEecCC
Q 045739 104 LALTDDGKVFSWGYGG 119 (189)
Q Consensus 104 ~~l~~~g~vy~~G~~~ 119 (189)
.+..-+++||++|-..
T Consensus 166 ~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 166 VCVKLQNELYVFGGGS 181 (323)
T ss_pred eEEEECCEEEEEcCCC
Confidence 3344578999998643
No 42
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=60.78 E-value=58 Score=26.93 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=39.5
Q ss_pred CEEEEEcCcce---eEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 40 PVAAVSCGGFF---TMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 40 ~i~~i~~G~~h---~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
.+.++.+|..+ .+++..+|++..|-.+. | +.++ .....+.+|..-.-..++++..|+||++-
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~------------W--t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV------------L--KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe------------e--eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 45556777776 77788889998885322 2 2222 13345777766666666677777777764
No 43
>PHA03098 kelch-like protein; Provisional
Probab=59.96 E-value=75 Score=27.24 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=10.9
Q ss_pred ceeEEEeCCCcEEEecC
Q 045739 49 FFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~ 65 (189)
.|++ ..-++++|++|-
T Consensus 382 ~~~~-~~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCV-VNVNNLIYVIGG 397 (534)
T ss_pred cceE-EEECCEEEEECC
Confidence 3444 445789999985
No 44
>PLN02153 epithiospecifier protein
Probab=58.65 E-value=94 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=11.7
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|++++ .++++|++|--
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 555554 45799999953
No 45
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=58.32 E-value=37 Score=27.54 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=37.2
Q ss_pred EEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCC--eeEEEecCCCEEEecC
Q 045739 104 LALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGS--TSAAVTEKGKLYMWGN 169 (189)
Q Consensus 104 ~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~--~~~~lt~~g~vy~wG~ 169 (189)
++..+.|+||+|-.... +....++........+|++.+-..+ ..+++++++.||-|-+
T Consensus 323 a~gnq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 45567899999965432 2224455555556677887766554 4455678888998854
No 46
>PHA02713 hypothetical protein; Provisional
Probab=57.87 E-value=35 Score=29.72 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=13.3
Q ss_pred CcceeEEEeCCCcEEEecCC
Q 045739 47 GGFFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n 66 (189)
.+.+..+..-+|+||+.|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444455567899999954
No 47
>PLN02153 epithiospecifier protein
Probab=56.65 E-value=1e+02 Score=24.69 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=10.9
Q ss_pred eEEEecCCCEEEecCC
Q 045739 155 SAAVTEKGKLYMWGNA 170 (189)
Q Consensus 155 ~~~lt~~g~vy~wG~n 170 (189)
++.+..+++||+||--
T Consensus 308 ~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 308 TATVYGKNGLLMHGGK 323 (341)
T ss_pred ccccCCcceEEEEcCc
Confidence 4455556789999854
No 48
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.62 E-value=1.6e+02 Score=26.79 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred CcEEEEEcCCceEEEEe--CCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEE-EEeeCCeeEEEecCCCEEEe
Q 045739 91 VRIIQIANGGYHSLALT--DDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTH-IACGGSTSAAVTEKGKLYMW 167 (189)
Q Consensus 91 ~~i~~v~~g~~~t~~l~--~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~-v~~g~~~~~~lt~~g~vy~w 167 (189)
..|+.|.-....-++++ .|-.+..|+-...-. ..+..+....+..+.. +.+-..+.+.+.++|.+++|
T Consensus 146 ddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---------~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 146 DDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---------LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred cceeEEEeccCCceEEeccccceEEEEEeccccc---------cceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 45777777666666664 444566666553211 2223333222222222 23445677888999999999
Q ss_pred cCCCC
Q 045739 168 GNAKD 172 (189)
Q Consensus 168 G~n~~ 172 (189)
..+..
T Consensus 217 ~~~~~ 221 (893)
T KOG0291|consen 217 TCDLR 221 (893)
T ss_pred EecCC
Confidence 99843
No 49
>PHA03098 kelch-like protein; Provisional
Probab=52.92 E-value=70 Score=27.44 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=11.4
Q ss_pred CCeeEEEecCCCEEEecC
Q 045739 152 GSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~wG~ 169 (189)
..|+++. -+++||++|-
T Consensus 381 ~~~~~~~-~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVVN-VNNLIYVIGG 397 (534)
T ss_pred ccceEEE-ECCEEEEECC
Confidence 3455544 4689999986
No 50
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=51.40 E-value=22 Score=22.43 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=27.0
Q ss_pred ccEEEEEee-CCeeEEEecCCCEEEecCCCCCcccC
Q 045739 143 EFVTHIACG-GSTSAAVTEKGKLYMWGNAKDSQLGV 177 (189)
Q Consensus 143 ~~i~~v~~g-~~~~~~lt~~g~vy~wG~n~~gqlg~ 177 (189)
..-..|.|. ....++|+++|.+|+-+--+.|++-+
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati 51 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATI 51 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEE
Confidence 457789999 88899999999999999766777643
No 51
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.11 E-value=1.8e+02 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=17.2
Q ss_pred cEEEEEcCCceEE-EEeCCCCEEEEecC
Q 045739 92 RIIQIANGGYHSL-ALTDDGKVFSWGYG 118 (189)
Q Consensus 92 ~i~~v~~g~~~t~-~l~~~g~vy~~G~~ 118 (189)
-+..|+.+.+--+ -=+++|.+++|+..
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 3555555554443 34677899999774
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.08 E-value=1.3e+02 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.0
Q ss_pred cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEE
Q 045739 80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSW 115 (189)
Q Consensus 80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~ 115 (189)
+.|.++-.-...-|.+|....+-.++=+.||.+-.+
T Consensus 135 ~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTY 170 (307)
T ss_pred CCccchhhhhcCceeEEEecccEEEeeccCCcEEEE
Confidence 333333333334588888888888888889987665
No 53
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=48.61 E-value=26 Score=22.17 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.6
Q ss_pred CCCCcEEEEEcCCceEEEEeCCCC
Q 045739 88 LVDVRIIQIANGGYHSLALTDDGK 111 (189)
Q Consensus 88 ~~~~~i~~v~~g~~~t~~l~~~g~ 111 (189)
..+.+|+++..|..+|.+..++|.
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G~ 32 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDGG 32 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-E
T ss_pred CCCCEEEEEEEcCCEEEEEeCCCc
Confidence 446789999999999999999984
No 54
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=45.73 E-value=3e+02 Score=26.85 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCEEEEEcCcce-eEEEe--CCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEE-EcCCceEEEE-eCCCCEE
Q 045739 39 VPVAAVSCGGFF-TMVLT--EEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQI-ANGGYHSLAL-TDDGKVF 113 (189)
Q Consensus 39 ~~i~~i~~G~~h-~~~lt--~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v-~~g~~~t~~l-~~~g~vy 113 (189)
..+.+++..+.| +++++ +||.|=.|-.-+. .|.+ ............+.++..+ .|+..+.+++ ++||.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEG---GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhh--hcCc---ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 457789999999 77765 7899999975442 1211 2233333444455566665 3455555544 7889998
Q ss_pred EEecCCC
Q 045739 114 SWGYGGH 120 (189)
Q Consensus 114 ~~G~~~~ 120 (189)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8876653
No 55
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.65 E-value=1.7e+02 Score=24.03 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=34.8
Q ss_pred CEEEEEcCcc-ee-EEEeCCCc-EEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCc-eEEEEeCCCCEEEE
Q 045739 40 PVAAVSCGGF-FT-MVLTEEGQ-LWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGY-HSLALTDDGKVFSW 115 (189)
Q Consensus 40 ~i~~i~~G~~-h~-~~lt~~g~-v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~-~t~~l~~~g~vy~~ 115 (189)
.+..|..|.. |. ++.+.||+ +|+.+ ..|.+ ..+.......++.|..|.. +.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEc--CCCeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4777877654 65 45677776 78764 22322 3334444556778877664 55677888885444
Q ss_pred ec
Q 045739 116 GY 117 (189)
Q Consensus 116 G~ 117 (189)
+.
T Consensus 95 ~n 96 (369)
T PF02239_consen 95 AN 96 (369)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 56
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=43.78 E-value=19 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=10.8
Q ss_pred CEEEecCCCCCccc
Q 045739 163 KLYMWGNAKDSQLG 176 (189)
Q Consensus 163 ~vy~wG~n~~gqlg 176 (189)
.+.+||+|-.|.+.
T Consensus 19 slVVWGRnG~g~~~ 32 (33)
T PRK02529 19 AMVVWGRNGDGSID 32 (33)
T ss_pred EEEEEecCCccccC
Confidence 47899999887654
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.28 E-value=76 Score=24.69 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=36.7
Q ss_pred CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCC-CEEEEe
Q 045739 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDG-KVFSWG 116 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g-~vy~~G 116 (189)
...|.+-=.+||+||.|-.-+.-|+ ..++......+.+++|-..--.+++.-| .++.|-
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~-----------sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQI-----------SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred cceeEEeccCCceEEEEEeccceee-----------eeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 3456666679999999986654433 2233334445788888776655555444 466663
No 58
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=42.80 E-value=25 Score=23.55 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=18.7
Q ss_pred cCcceeEEEeCCCcEEEecCCC
Q 045739 46 CGGFFTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 46 ~G~~h~~~lt~~g~v~~~G~n~ 67 (189)
.-..|.++.|.-|.||.|+.+.
T Consensus 77 ~~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 77 PDNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred CceEEEEEEcccccEEEEEcCC
Confidence 3468999999999999999665
No 59
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.16 E-value=3e+02 Score=25.91 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=27.8
Q ss_pred ccCcccccC----CCCEEEEEcCcce--eEEEeCCCcEEEecC
Q 045739 29 SIPSKVKAL----PVPVAAVSCGGFF--TMVLTEEGQLWNWGA 65 (189)
Q Consensus 29 ~~p~~~~~~----~~~i~~i~~G~~h--~~~lt~~g~v~~~G~ 65 (189)
.+|.+|... +..|.+|++...+ .++++.+|+|..|-.
T Consensus 413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 445555333 3689999999999 799999998777653
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=42.09 E-value=1.9e+02 Score=23.63 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=12.0
Q ss_pred CCeeEEEecCCCEEEec
Q 045739 152 GSTSAAVTEKGKLYMWG 168 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~wG 168 (189)
..+.++.+++|.||++-
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 45667777788888763
No 61
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=41.22 E-value=2.8e+02 Score=25.33 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=65.6
Q ss_pred EcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCc--eEEEEeCCCCEEEEecCCCCC
Q 045739 45 SCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGY--HSLALTDDGKVFSWGYGGHGQ 122 (189)
Q Consensus 45 ~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~--~t~~l~~~g~vy~~G~~~~gq 122 (189)
+....+.+++|++|++|.+-.+.-- .|.+. ....-..+....+.+|+.+.+... +.+++++.|.++-.-..++..
T Consensus 533 ~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~a--GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~ 609 (735)
T TIGR01062 533 GKSNQKVVFIDSTGRSYALDPDNLP-SARGQ--GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIA 609 (735)
T ss_pred ecCCCEEEEEECCCeEEEEEhHhcC-cCccC--CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccc
Confidence 3445568999999999999765542 23221 111222234445677888776543 467888999777664444322
Q ss_pred CCCCCCCCccccEEeccccCccEEE--EEeeC-CeeEEEecCCCEEEecCCCCCcc
Q 045739 123 LGHSFTQNQKVPMVIEALADEFVTH--IACGG-STSAAVTEKGKLYMWGNAKDSQL 175 (189)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~~~~i~~--v~~g~-~~~~~lt~~g~vy~wG~n~~gql 175 (189)
...+... ...++. +..+.. ...+. ++.+++|++|++..+-.++.-++
T Consensus 610 ~~RaGKg----vi~Lk~--~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~ 659 (735)
T TIGR01062 610 RNKAGKA----LINLPE--NASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPEL 659 (735)
T ss_pred cCcCCeE----EEEeCC--CCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCcc
Confidence 1111000 011111 111221 12233 35778899999888776554443
No 62
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.16 E-value=2.3e+02 Score=27.54 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=35.4
Q ss_pred eEEEeCCCcEEEecCCCCCccCCCCCCC--CcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 51 TMVLTEEGQLWNWGANSNYELGRGDRVG--GWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 51 ~~~lt~~g~v~~~G~n~~gqlg~~~~~~--~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
-+.+|.|+++|.|-.+..+++..=+... ...--.+....+.=+..| .|.++|..--.|+..|-.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEE
Confidence 3568999999999887765553211111 011111222222222222 678888888888888754
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.81 E-value=1.3e+02 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=22.6
Q ss_pred CeeEEEecCCCEEEecCCCCCcccCCC----CCCCccccCC
Q 045739 153 STSAAVTEKGKLYMWGNAKDSQLGVPG----LPVVQPCPVE 189 (189)
Q Consensus 153 ~~~~~lt~~g~vy~wG~n~~gqlg~~~----~~~~~~~p~~ 189 (189)
.-+++++-+|+.++.|.+. |..-+=+ .....|+|++
T Consensus 390 gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDS-GIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred eeeeeecCCCceEEeccCc-ceEEEeccchhhccCCCCchh
Confidence 4456666788899999854 4443322 2366777774
No 64
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=40.34 E-value=19 Score=22.51 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=9.5
Q ss_pred CE-EEecCCCCCc
Q 045739 163 KL-YMWGNAKDSQ 174 (189)
Q Consensus 163 ~v-y~wG~n~~gq 174 (189)
++ |+||.|.+.+
T Consensus 57 sv~waWGSNKnk~ 69 (84)
T PF07312_consen 57 SVYWAWGSNKNKQ 69 (84)
T ss_pred ceeeeeccCCCCC
Confidence 35 9999998765
No 65
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=40.12 E-value=3e+02 Score=25.22 Aligned_cols=102 Identities=11% Similarity=0.068 Sum_probs=57.3
Q ss_pred CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEE--EcCCceEEEEeCCCCEEEEecCCCCCCC
Q 045739 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQI--ANGGYHSLALTDDGKVFSWGYGGHGQLG 124 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v--~~g~~~t~~l~~~g~vy~~G~~~~gq~g 124 (189)
-...++++|++|-|-.--...+. +..+....+..+..+ +......++++++|++|.+-.++... |
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP~-G 559 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPS-A 559 (735)
T ss_pred CcceEEEEecCCEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcCc-C
Confidence 35667788888877643322221 112222233334444 33445678889999999997766542 3
Q ss_pred CCCCCCccccE--EeccccCccEEEEEeeCC--eeEEEecCCCEE
Q 045739 125 HSFTQNQKVPM--VIEALADEFVTHIACGGS--TSAAVTEKGKLY 165 (189)
Q Consensus 125 ~~~~~~~~~~~--~~~~~~~~~i~~v~~g~~--~~~~lt~~g~vy 165 (189)
.+ ...|. .++...++.|+.+.+... +.+++|+.|..+
T Consensus 560 R~----aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGK 600 (735)
T TIGR01062 560 RG----QGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGF 600 (735)
T ss_pred cc----CCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEE
Confidence 21 11222 233345567887777643 467888888544
No 66
>PF13964 Kelch_6: Kelch motif
Probab=39.75 E-value=28 Score=19.10 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=12.0
Q ss_pred ceeEEEeCCCcEEEecCCC
Q 045739 49 FFTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n~ 67 (189)
.|++ ..-+++||++|-..
T Consensus 4 ~~s~-v~~~~~iyv~GG~~ 21 (50)
T PF13964_consen 4 GHSA-VVVGGKIYVFGGYD 21 (50)
T ss_pred cCEE-EEECCEEEEECCCC
Confidence 3444 55667999999443
No 67
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=39.49 E-value=74 Score=31.55 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=60.1
Q ss_pred CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeC--CCCCCcEEEEEcCCceEE-EEeCCCCEEE-----EecC
Q 045739 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLP--NLVDVRIIQIANGGYHSL-ALTDDGKVFS-----WGYG 118 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~--~~~~~~i~~v~~g~~~t~-~l~~~g~vy~-----~G~~ 118 (189)
+..+.++|++.|++-..= + ... |+.+. .+ ..+|+++++-..|.+ +++.+|.||. |=.+
T Consensus 712 ~~~~fvald~qg~lt~h~--k---------~g~--p~~l~~~gl-~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~ 777 (1774)
T PF11725_consen 712 NDNKFVALDDQGDLTAHQ--K---------PGR--PVPLSRPGL-SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGN 777 (1774)
T ss_pred cCCceEEeccCCcccccc--C---------CCC--CccCCCCCC-CcchhheeeccccceeEecCCCceeecCHHHhhCc
Confidence 557777788877765532 1 111 33332 23 468999999988775 7889999996 4222
Q ss_pred CCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCC
Q 045739 119 GHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKG 162 (189)
Q Consensus 119 ~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g 162 (189)
..+ ..-.....++..+...++..+....+|.+.+.-++
T Consensus 778 ~~~------~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 778 AEG------DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ccC------CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 211 01112334455556678999999988888776554
No 68
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=38.97 E-value=82 Score=18.96 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=22.1
Q ss_pred ccEEEEEeeCCeeEEEecCCCEEEecCCCC
Q 045739 143 EFVTHIACGGSTSAAVTEKGKLYMWGNAKD 172 (189)
Q Consensus 143 ~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~ 172 (189)
.+-+.+-+...++++|++.|.-|.|-.+..
T Consensus 25 ~P~~n~LsNg~y~~mvt~~G~GySw~~~~~ 54 (66)
T PF06204_consen 25 APWVNVLSNGSYGVMVTNSGSGYSWAKNSR 54 (66)
T ss_dssp S--EEEE-SSSEEEEEETTSBEEEEES-TT
T ss_pred CCEEEEeeCCcEEEEEcCCCceeecccccC
Confidence 456777777899999999999999987654
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.96 E-value=2.1e+02 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEEeeCCeeEEE--ecCCCEEEecCCCC
Q 045739 144 FVTHIACGGSTSAAV--TEKGKLYMWGNAKD 172 (189)
Q Consensus 144 ~i~~v~~g~~~~~~l--t~~g~vy~wG~n~~ 172 (189)
.|.+-..|.+-.++. ++|++||.|=+-..
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 366666777666666 57899999987553
No 70
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=38.88 E-value=76 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCC-ceEEEEeCCCCEEEEe
Q 045739 89 VDVRIIQIANGG-YHSLALTDDGKVFSWG 116 (189)
Q Consensus 89 ~~~~i~~v~~g~-~~t~~l~~~g~vy~~G 116 (189)
.+.++.++.+|. .-+++++++|+|+.-.
T Consensus 35 ~~~~lIdaT~GrktrsviitdsghviLSa 63 (73)
T PF04025_consen 35 EEGKLIDATYGRKTRSVIITDSGHVILSA 63 (73)
T ss_pred HcCcEEEeeCCCceeEEEEEcCCcEEEee
Confidence 346899999998 5667889999988653
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.80 E-value=2.5e+02 Score=23.93 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=37.8
Q ss_pred ceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEE--EEeCCCCEEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSL--ALTDDGKVFSWGYGG 119 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~--~l~~~g~vy~~G~~~ 119 (189)
.+++++..||-+|.-|.-+ +++-.=+-.........+. -..+|+.|+.+.+--. .-.+|+.|..|-...
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 5666777788888777543 3332111111111111121 2357888888775443 446788899996554
No 72
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=38.24 E-value=88 Score=27.44 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=30.0
Q ss_pred EEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccE---EEEEeeCCeeEEEecCCCEEEecC
Q 045739 105 ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFV---THIACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 105 ~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i---~~v~~g~~~~~~lt~~g~vy~wG~ 169 (189)
+..-+++||+.|-.+. +-... . ...-.+..... ..+.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~---~----VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALS---S----VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccc---e----EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455889999987753 11110 0 11111111222 223345555555556789999886
No 73
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=37.79 E-value=42 Score=16.91 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.7
Q ss_pred eeEEEeCCCcEEE
Q 045739 50 FTMVLTEEGQLWN 62 (189)
Q Consensus 50 h~~~lt~~g~v~~ 62 (189)
+..+++.+|+||.
T Consensus 2 ~VWav~~~G~v~~ 14 (32)
T PF06462_consen 2 QVWAVTSDGSVYF 14 (32)
T ss_pred eEEEEcCCCCEEE
Confidence 5678999999986
No 74
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=37.42 E-value=1.4e+02 Score=23.18 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=38.2
Q ss_pred EEcC-CceEEEEeCCCCEEEEecCCCCCCCC-CCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCC
Q 045739 96 IANG-GYHSLALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 96 v~~g-~~~t~~l~~~g~vy~~G~~~~gq~g~-~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~ 171 (189)
++.+ ++.|..+..||+|++.|-........ +.......+..+..+.. .-.......+=-+.|.-+|+||.|+.+.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~-~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ-TSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh-hhccCccccCceEEEcCCCCEEEEEcCC
Confidence 4444 46677888999999998665211110 00000111122222211 0111223344456666789999999865
No 75
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=35.81 E-value=1.6e+02 Score=23.48 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=30.6
Q ss_pred CceEEEEeCCCCEEEEecCC--CCCCCCCC-----CCCccccEEeccccCccEEEE--EeeCCeeEEEecCCCEEEecC
Q 045739 100 GYHSLALTDDGKVFSWGYGG--HGQLGHSF-----TQNQKVPMVIEALADEFVTHI--ACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 100 ~~~t~~l~~~g~vy~~G~~~--~gq~g~~~-----~~~~~~~~~~~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~wG~ 169 (189)
+-|+++.- ++++|+||-.+ .+.|..-. ......|. |... .+-+.|++++-. .+.|.+|-
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~---------v~G~vPgaRDGHsAcV~g-n~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE---------VEGFVPGARDGHSACVWG-NQMYIFGG 147 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccc---------eeeecCCccCCceeeEEC-cEEEEecC
Confidence 35665554 55999998542 44443211 11111221 2222 144567777664 57888884
No 76
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=35.23 E-value=1.1e+02 Score=23.52 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=38.2
Q ss_pred EEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCc--eEEEEeCCCCEEEEe
Q 045739 43 AVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGY--HSLALTDDGKVFSWG 116 (189)
Q Consensus 43 ~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~--~t~~l~~~g~vy~~G 116 (189)
.|.-+..-.++.+.+|.||+|=.|.+|++- ..+....+.-...|..+.. -.++-..+|+++.|-
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~----------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHS----------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHH----------HhhhcccccceeccccccccceeEEeccCCceeeec
Confidence 344445566678899999999988777642 1222223333344444555 444556777888773
No 77
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=34.28 E-value=44 Score=18.21 Aligned_cols=16 Identities=13% Similarity=0.511 Sum_probs=11.4
Q ss_pred eeEEEeCCCcEEEecCC
Q 045739 50 FTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 50 h~~~lt~~g~v~~~G~n 66 (189)
|++ ..-++++|++|--
T Consensus 5 hs~-~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 5 HSA-VVLDGKIYVFGGY 20 (49)
T ss_pred eEE-EEECCEEEEECCc
Confidence 444 4557899999944
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.70 E-value=3e+02 Score=23.43 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeC--CeeEEEecCCCEEEecC
Q 045739 101 YHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGG--STSAAVTEKGKLYMWGN 169 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~--~~~~~lt~~g~vy~wG~ 169 (189)
.+++++-.||-|+.-|..+ +++-.-+.+......+++. -..+|+.|.-+. ++.+.-.+++.|..|-.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 5566667788877776654 2332211111111122222 223566666554 44445566788999864
No 79
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=33.30 E-value=2.4e+02 Score=22.22 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=36.0
Q ss_pred CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC--ceEEEEeCCCCEEEEecCC
Q 045739 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG--YHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~--~~t~~l~~~g~vy~~G~~~ 119 (189)
...|-+.=+.+|+|++|-.... .....+++.. ...|.+++... ...+++++.|+.|+|-.-.
T Consensus 135 nQteLis~dqsg~irvWDl~~~----------~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGEN----------SCTHELIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CcceEEeecCCCcEEEEEccCC----------ccccccCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3445555567888999975432 1111222211 13455555544 4556788999999997654
No 80
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.69 E-value=56 Score=18.92 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.7
Q ss_pred ceEEEEeCCCCEEEEecCC
Q 045739 101 YHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~G~~~ 119 (189)
-+.+++..||+|++.|...
T Consensus 3 ~~~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVD 21 (55)
T ss_pred eEEEEECCCCcEEEEEEee
Confidence 3677889999999999764
No 81
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=32.46 E-value=2.8e+02 Score=22.72 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.2
Q ss_pred EEEeeCCeeEEEec-CCCEEEecC-CCCCcccCCCCCCCccccC
Q 045739 147 HIACGGSTSAAVTE-KGKLYMWGN-AKDSQLGVPGLPVVQPCPV 188 (189)
Q Consensus 147 ~v~~g~~~~~~lt~-~g~vy~wG~-n~~gqlg~~~~~~~~~~p~ 188 (189)
.+.-+.+|.++..+ ++.|-++.. ...|+|.........|.||
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv 340 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPV 340 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence 45566677766654 455667764 4578898888888888886
No 82
>PLN02772 guanylate kinase
Probab=32.12 E-value=1.3e+02 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.5
Q ss_pred eeCCeeEEEecCCCEEEecC
Q 045739 150 CGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 150 ~g~~~~~~lt~~g~vy~wG~ 169 (189)
+...|++++.++.+|++.+.
T Consensus 75 ~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 75 PCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred CCCcceEEEECCceEEEEeC
Confidence 33468888888889998875
No 83
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=31.72 E-value=1.2e+02 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.4
Q ss_pred cCCceEEEEeCCCCEEEEecCCCCCC
Q 045739 98 NGGYHSLALTDDGKVFSWGYGGHGQL 123 (189)
Q Consensus 98 ~g~~~t~~l~~~g~vy~~G~~~~gq~ 123 (189)
-.....++.+.+|.||+|=.|.++++
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~ 93 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAH 93 (238)
T ss_pred ccCceEEeecccceEEEecCCccchH
Confidence 34445567799999999988877665
No 84
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=30.11 E-value=1.8e+02 Score=24.81 Aligned_cols=67 Identities=15% Similarity=0.331 Sum_probs=34.6
Q ss_pred cEEEEEcCCceEEEE--eCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEE--ecCCCEEEe
Q 045739 92 RIIQIANGGYHSLAL--TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAV--TEKGKLYMW 167 (189)
Q Consensus 92 ~i~~v~~g~~~t~~l--~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~l--t~~g~vy~w 167 (189)
++..++....-.+++ +..|+||.|-.++- .| .......... |..+.-.++-+.++ .+||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~L---------L~v~~aHYQ~--ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSG-IL---------LNVLSAHYQS--ITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccc-cH---------HHHHHhhccc--eeEEEEeCCCcEEEecCCCccEEEE
Confidence 455555544433333 47888999966541 11 1111222322 55554444444455 457888888
Q ss_pred cCC
Q 045739 168 GNA 170 (189)
Q Consensus 168 G~n 170 (189)
=--
T Consensus 151 ~l~ 153 (476)
T KOG0646|consen 151 LLT 153 (476)
T ss_pred EEE
Confidence 643
No 85
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.61 E-value=68 Score=14.75 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=10.4
Q ss_pred eEEEEeCCCCEEEEe
Q 045739 102 HSLALTDDGKVFSWG 116 (189)
Q Consensus 102 ~t~~l~~~g~vy~~G 116 (189)
++++.+.+|.||+--
T Consensus 8 ~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGT 22 (24)
T ss_dssp EEEEE-TTSCEEEEE
T ss_pred EEEEEcCCcCEEEEe
Confidence 456778899999753
No 86
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=29.39 E-value=56 Score=17.33 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=11.2
Q ss_pred eeEEEeCCCcEEEec
Q 045739 50 FTMVLTEEGQLWNWG 64 (189)
Q Consensus 50 h~~~lt~~g~v~~~G 64 (189)
+..+..-+++||+.|
T Consensus 4 ~~~~~~~~~~iyv~G 18 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIG 18 (47)
T ss_dssp SEEEEEETTEEEEEE
T ss_pred cCEEEEECCEEEEEe
Confidence 344566678999999
No 87
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=27.36 E-value=1.1e+02 Score=30.60 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=48.1
Q ss_pred ccCCCCEEEEEcCcce-eEEEeCCCcEEEecCCCCCccCCCC-CCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCC
Q 045739 35 KALPVPVAAVSCGGFF-TMVLTEEGQLWNWGANSNYELGRGD-RVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDG 110 (189)
Q Consensus 35 ~~~~~~i~~i~~G~~h-~~~lt~~g~v~~~G~n~~gqlg~~~-~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g 110 (189)
..+..+|++|+.=..| -+|+|.+|+||..-.-..-..-.++ ....|.|..++ .+.++..+....+|...+.-++
T Consensus 740 ~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 740 PGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC--CCCchhhhhcCCCCceEEEecC
Confidence 3445789999999884 5678999999974322111111111 12345555555 7788999999998888876554
No 88
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=27.07 E-value=3.3e+02 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=14.4
Q ss_pred cCcceeEEEeCCCcEEEecCCC
Q 045739 46 CGGFFTMVLTEEGQLWNWGANS 67 (189)
Q Consensus 46 ~G~~h~~~lt~~g~v~~~G~n~ 67 (189)
..+.+..+..-+|.||+.|--+
T Consensus 321 ~~r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 321 SPRCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred cccccccEEEECCEEEEEcccc
Confidence 4444555566667999999443
No 89
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.74 E-value=1e+02 Score=15.85 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=11.9
Q ss_pred cCcceeEEEeCCCcEEEec
Q 045739 46 CGGFFTMVLTEEGQLWNWG 64 (189)
Q Consensus 46 ~G~~h~~~lt~~g~v~~~G 64 (189)
....+.++-+.+|+||+.-
T Consensus 19 v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 19 VAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp ECTSEEEEE-TTSEEEEEE
T ss_pred EECCEEEEEcCCCEEEEEe
Confidence 3345677777778888753
No 90
>PF13854 Kelch_5: Kelch motif
Probab=26.61 E-value=77 Score=16.69 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=11.7
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|++++. ++++|.+|-.
T Consensus 7 ~hs~~~~-~~~iyi~GG~ 23 (42)
T PF13854_consen 7 GHSAVVV-GNNIYIFGGY 23 (42)
T ss_pred ceEEEEE-CCEEEEEcCc
Confidence 4555554 4899999933
No 91
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=25.83 E-value=50 Score=21.87 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=17.9
Q ss_pred eCCeeEEEecCCCEEEecCCCCCc
Q 045739 151 GGSTSAAVTEKGKLYMWGNAKDSQ 174 (189)
Q Consensus 151 g~~~~~~lt~~g~vy~wG~n~~gq 174 (189)
-+..+-+|-.+++|.+||...+.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 345666777899999999876544
No 92
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=25.69 E-value=3.9e+02 Score=22.20 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=37.7
Q ss_pred cEEEEEcCCce---EEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEec
Q 045739 92 RIIQIANGGYH---SLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWG 168 (189)
Q Consensus 92 ~i~~v~~g~~~---t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG 168 (189)
.+..+.++.++ .+++..+|++..|..+. ...++ .....+.+|.--...-.|+...|++|++-
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34445666665 66777888887784221 12222 23345777766666667777677777765
No 93
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=61 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.7
Q ss_pred EEEEEcCcceeEEEeCCCcEEEecC
Q 045739 41 VAAVSCGGFFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 41 i~~i~~G~~h~~~lt~~g~v~~~G~ 65 (189)
.-++..-..|.+|+...|+||+|-.
T Consensus 107 lfk~FT~~sHIvAv~TTGNvy~~ea 131 (518)
T KOG0883|consen 107 LFKVFTRFSHIVAVRTTGNVYSWEA 131 (518)
T ss_pred eeeeecccceEEEEEecCceeeHHH
Confidence 4456667789999999999999983
No 94
>PRK04323 hypothetical protein; Provisional
Probab=25.30 E-value=1.2e+02 Score=19.68 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCC-ceEEEEeCCCCEEEEe
Q 045739 89 VDVRIIQIANGG-YHSLALTDDGKVFSWG 116 (189)
Q Consensus 89 ~~~~i~~v~~g~-~~t~~l~~~g~vy~~G 116 (189)
...++.++.+|. .-+++++++++||.-.
T Consensus 39 ~~g~lidaT~GrktrsvIItds~hV~LSa 67 (91)
T PRK04323 39 ERGMLIDATYGRKTRAVIITDSGHVILSA 67 (91)
T ss_pred HcCeEEeccCCCceeEEEEecCCeEEEee
Confidence 356899999955 6677889999998764
No 95
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.04 E-value=2.4e+02 Score=25.77 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=38.7
Q ss_pred cEEEEEcCCceEE-EEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecC
Q 045739 92 RIIQIANGGYHSL-ALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 92 ~i~~v~~g~~~t~-~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~ 169 (189)
+++.+.-...+.+ +++++|.|+++|.... +- +..+ . .......+|....--.+-.++++.+|+++.--.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge--~i----e~~s--v-g~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGE--FI----ESNS--V-GFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchh--hh----cccc--c-ccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 4555555556664 7799999999976531 10 0000 0 001111234444434477888999999987433
No 96
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=24.64 E-value=68 Score=18.17 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=13.0
Q ss_pred ceEEEEeCCCCEEEE
Q 045739 101 YHSLALTDDGKVFSW 115 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~ 115 (189)
...++|+.||.||.+
T Consensus 5 ~~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 5 WNSLYIDPDGDVYPC 19 (64)
T ss_pred CeEEEEeeCccEEeC
Confidence 456789999999998
No 97
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=23.73 E-value=64 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=14.6
Q ss_pred EEeCCCcEEEecCCC-CCccC
Q 045739 53 VLTEEGQLWNWGANS-NYELG 72 (189)
Q Consensus 53 ~lt~~g~v~~~G~n~-~gqlg 72 (189)
....+++|++||.+. .+.|.
T Consensus 67 ~~~~~~~Li~CGT~~~~p~C~ 87 (433)
T PF01403_consen 67 LVYNDNRLIVCGTNAFQPICR 87 (433)
T ss_dssp EEESSSEEEEEESTTTSCEEE
T ss_pred EecCCCEEEEcCccccccCcc
Confidence 344556899999988 66664
No 98
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.69 E-value=4.2e+02 Score=21.55 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=21.5
Q ss_pred CCCCEEEEEcCcceeEEEeCCCcEEEecC
Q 045739 37 LPVPVAAVSCGGFFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 37 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~ 65 (189)
+..+|+.|..-+.|.+++.++ ++|+|-.
T Consensus 93 f~~~I~~V~l~r~riVvvl~~-~I~VytF 120 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLEN-KIYVYTF 120 (346)
T ss_pred eccceeeEEEcCCeEEEEecC-eEEEEEc
Confidence 346899999999999998875 6555543
No 99
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.46 E-value=6.1e+02 Score=23.27 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=44.4
Q ss_pred EEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC------ceEEEEeCCCCEEEE
Q 045739 42 AAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG------YHSLALTDDGKVFSW 115 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~------~~t~~l~~~g~vy~~ 115 (189)
...+.+..+.+++|+.|++|.+=...-...+..... ......+....+.+|+.+.+-. .+.+++|++|.+.-.
T Consensus 536 v~~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~G-v~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt 614 (738)
T TIGR01061 536 QTIANTTDQILIFTSLGNIINIPVHKLADIRWKDLG-EHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRI 614 (738)
T ss_pred EEEecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCC-cChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEe
Confidence 344556667899999999998866554444332221 1111223333456677765533 246788999977654
Q ss_pred ec
Q 045739 116 GY 117 (189)
Q Consensus 116 G~ 117 (189)
-.
T Consensus 615 ~l 616 (738)
T TIGR01061 615 EL 616 (738)
T ss_pred EH
Confidence 33
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=21.40 E-value=4.4e+02 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.053 Sum_probs=13.5
Q ss_pred CCeeEEEecCCCEEEecCCC
Q 045739 152 GSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~wG~n~ 171 (189)
..+.++.+.+|.||++-..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC
Confidence 35666667788888876543
No 101
>PHA00684 hypothetical protein
Probab=21.07 E-value=71 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.8
Q ss_pred cEEEecCCCCCccCCC
Q 045739 59 QLWNWGANSNYELGRG 74 (189)
Q Consensus 59 ~v~~~G~n~~gqlg~~ 74 (189)
+||++|+|..|+-|.+
T Consensus 1 eIFVFGSNlaG~Hg~G 16 (128)
T PHA00684 1 MIFVFGSNLAGAHGAG 16 (128)
T ss_pred CeEEecCCccccccch
Confidence 5899999999886544
No 102
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=20.07 E-value=2e+02 Score=16.75 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCceEEEEeCCCCEEEE
Q 045739 90 DVRIIQIANGGYHSLALTDDGKVFSW 115 (189)
Q Consensus 90 ~~~i~~v~~g~~~t~~l~~~g~vy~~ 115 (189)
+..++.+.++..-.++.+.+|+|=-+
T Consensus 25 GsN~v~v~~~g~~VA~~ta~GkveeY 50 (59)
T PF05862_consen 25 GSNAVAVQVDGGIVAAVTANGKVEEY 50 (59)
T ss_pred CCceEEEeeCCCEEEEEecCCceeee
Confidence 45688899999999999999998444
Done!