Query 045739
Match_columns 189
No_of_seqs 120 out of 1272
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 8.3E-42 2.8E-46 278.9 21.0 180 1-187 193-374 (406)
2 4d9s_A UVB-resistance protein 100.0 2.1E-41 7E-46 276.6 21.0 174 1-181 141-315 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 3.8E-41 1.3E-45 273.6 17.4 181 1-188 179-363 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 7E-41 2.4E-45 272.1 17.0 174 1-181 127-303 (389)
5 1a12_A RCC1, regulator of chro 100.0 5.8E-40 2E-44 268.5 18.5 184 1-187 184-382 (413)
6 1a12_A RCC1, regulator of chro 100.0 7.6E-39 2.6E-43 261.9 17.5 176 1-183 131-326 (413)
7 3mvd_K Regulator of chromosome 100.0 1.4E-38 4.8E-43 260.9 18.9 169 1-180 44-216 (423)
8 3of7_A Regulator of chromosome 100.0 2.9E-38 1E-42 262.5 20.0 181 1-188 224-424 (473)
9 3mvd_K Regulator of chromosome 100.0 1.2E-37 4E-42 255.4 21.2 183 1-188 199-392 (423)
10 3of7_A Regulator of chromosome 100.0 3.2E-38 1.1E-42 262.3 16.1 176 1-180 30-241 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 9.2E-33 3.2E-37 215.4 16.0 114 40-180 103-216 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3.5E-32 1.2E-36 212.2 15.4 134 1-179 43-176 (282)
13 4gbf_A Phikz131; 7-bladed beta 97.1 0.0018 6.3E-08 48.8 7.3 84 91-187 309-396 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.6 0.0051 1.7E-07 46.5 6.4 72 39-123 309-380 (400)
15 1k3i_A Galactose oxidase precu 90.7 3.4 0.00012 35.0 11.6 56 102-169 246-305 (656)
16 2zwa_A Leucine carboxyl methyl 88.7 3.8 0.00013 35.2 10.4 65 48-119 441-510 (695)
17 2zwa_A Leucine carboxyl methyl 85.5 11 0.00036 32.4 11.4 64 100-170 441-509 (695)
18 1wp5_A Topoisomerase IV; broke 80.1 19 0.00063 27.9 11.5 124 41-170 43-173 (323)
19 3uc1_A DNA gyrase subunit A; D 79.3 20 0.00068 27.7 11.8 123 41-170 46-175 (327)
20 3l6v_A GYRA, DNA gyrase subuni 76.0 27 0.00093 27.5 13.1 129 42-177 51-194 (370)
21 1k3i_A Galactose oxidase precu 75.9 35 0.0012 28.7 13.6 71 101-173 458-533 (656)
22 3ii7_A Kelch-like protein 7; p 75.6 14 0.00049 27.4 8.0 16 153-169 193-208 (306)
23 1xip_A Nucleoporin NUP159; bet 73.0 9.6 0.00033 30.4 6.6 107 48-170 39-154 (388)
24 1q7f_A NHL, brain tumor CG1071 72.2 25 0.00086 25.5 11.3 18 101-118 209-226 (286)
25 1suu_A DNA gyrase subunit A; t 72.2 30 0.001 26.4 11.1 120 42-169 52-179 (312)
26 1p22_A F-BOX/WD-repeat protein 71.4 34 0.0012 26.7 16.3 69 38-118 173-241 (435)
27 3no0_A DNA gyrase subunit A; D 71.0 30 0.001 25.9 12.5 117 40-166 117-239 (276)
28 2uvk_A YJHT; unknown function, 70.9 19 0.00065 27.4 7.8 18 152-170 110-127 (357)
29 2woz_A Kelch repeat and BTB do 70.2 16 0.00055 27.4 7.2 18 48-65 47-64 (318)
30 3ii7_A Kelch-like protein 7; p 70.0 21 0.00072 26.5 7.7 17 49-66 48-64 (306)
31 4asc_A Kelch repeat and BTB do 68.7 15 0.00053 27.5 6.8 17 49-66 141-157 (315)
32 1zi0_A DNA gyrase subunit A; b 68.0 38 0.0013 25.8 11.9 120 42-169 47-174 (307)
33 1xip_A Nucleoporin NUP159; bet 66.4 47 0.0016 26.3 12.5 101 37-167 87-187 (388)
34 2ovr_B FBW7, F-BOX/WD repeat p 65.8 46 0.0016 25.9 14.6 25 92-116 241-265 (445)
35 2ovr_B FBW7, F-BOX/WD repeat p 65.5 46 0.0016 25.9 14.5 110 39-171 280-391 (445)
36 1p22_A F-BOX/WD-repeat protein 62.0 54 0.0018 25.5 15.6 113 37-170 212-324 (435)
37 2xn4_A Kelch-like protein 2; s 61.6 37 0.0013 25.0 7.7 16 49-65 54-69 (302)
38 4aez_A CDC20, WD repeat-contai 59.7 57 0.0019 25.0 15.0 105 43-170 98-204 (401)
39 1zvt_A Topoisomerase IV subuni 57.9 54 0.0019 24.2 10.6 120 43-171 39-163 (256)
40 1zgk_A Kelch-like ECH-associat 57.0 17 0.0006 27.1 5.1 17 153-170 255-271 (308)
41 1gxr_A ESG1, transducin-like e 55.9 56 0.0019 23.7 12.3 73 44-118 7-80 (337)
42 2vpj_A Kelch-like protein 12; 55.4 33 0.0011 25.2 6.4 17 49-66 55-71 (301)
43 2vpj_A Kelch-like protein 12; 54.0 62 0.0021 23.7 9.7 17 49-66 105-121 (301)
44 1suu_A DNA gyrase subunit A; t 50.1 82 0.0028 23.9 9.9 116 49-169 9-131 (312)
45 1rwi_B Serine/threonine-protei 46.0 70 0.0024 22.6 6.8 15 102-116 153-167 (270)
46 3v7d_B Cell division control p 43.5 1.1E+02 0.0038 23.7 14.4 109 39-171 271-381 (464)
47 3no0_A DNA gyrase subunit A; D 38.2 1.2E+02 0.0042 22.5 12.9 119 38-167 67-192 (276)
48 2woz_A Kelch repeat and BTB do 38.1 26 0.00088 26.2 3.3 16 49-65 151-166 (318)
49 3uc1_A DNA gyrase subunit A; D 37.8 1.4E+02 0.0046 23.0 13.7 128 43-177 152-293 (327)
50 1wp5_A Topoisomerase IV; broke 37.1 1.2E+02 0.0042 23.1 7.1 72 95-167 45-121 (323)
51 1zvu_A Topoisomerase IV subuni 36.9 2.1E+02 0.0071 24.8 11.4 122 42-172 508-634 (716)
52 1sq9_A Antiviral protein SKI8; 30.2 1.7E+02 0.0058 21.8 14.8 125 34-171 12-157 (397)
53 1q7f_A NHL, brain tumor CG1071 30.2 1.5E+02 0.0051 21.1 7.5 13 103-115 255-267 (286)
54 3odt_A Protein DOA1; ubiquitin 29.8 1.5E+02 0.0051 21.0 14.7 66 37-116 103-171 (313)
55 3v7d_B Cell division control p 29.4 2E+02 0.0067 22.2 14.6 110 39-172 311-422 (464)
56 2dg1_A DRP35, lactonase; beta 29.3 1.7E+02 0.0057 21.4 11.0 17 50-66 48-64 (333)
57 3sfz_A APAF-1, apoptotic pepti 27.3 3.4E+02 0.012 24.3 11.6 114 38-169 1127-1247(1249)
58 3q7m_A Lipoprotein YFGL, BAMB; 26.9 2E+02 0.0069 21.5 9.7 16 152-167 359-374 (376)
59 1yfq_A Cell cycle arrest prote 25.5 1.9E+02 0.0066 20.9 13.7 121 37-171 149-282 (342)
60 1r5m_A SIR4-interacting protei 24.9 2.2E+02 0.0074 21.2 13.8 69 38-118 289-360 (425)
61 3vgz_A Uncharacterized protein 24.6 2E+02 0.007 20.9 9.8 16 49-64 91-107 (353)
62 2ftc_O L27MT, MRP-L27, mitocho 23.3 41 0.0014 19.7 1.6 20 42-61 49-68 (69)
63 1zvt_A Topoisomerase IV subuni 23.1 2.2E+02 0.0077 20.8 10.3 67 97-166 41-109 (256)
64 3mmy_A MRNA export factor; mRN 22.6 2.2E+02 0.0077 20.6 13.8 113 36-171 37-160 (368)
65 1zvu_A Topoisomerase IV subuni 22.4 3.8E+02 0.013 23.2 8.7 68 97-167 511-580 (716)
66 3odt_A Protein DOA1; ubiquitin 21.6 2.2E+02 0.0075 20.1 14.5 115 33-168 13-130 (313)
67 4gga_A P55CDC, cell division c 21.2 2.8E+02 0.0095 21.2 14.2 61 47-118 114-177 (420)
68 2z3g_A Blasticidin-S deaminase 21.2 53 0.0018 21.6 2.1 17 155-172 31-47 (130)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.3e-42 Score=278.93 Aligned_cols=180 Identities=32% Similarity=0.565 Sum_probs=162.2
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG 79 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 79 (189)
+||+||.|. +||||.++... ...|+++..+. .+|++|+||..|+++|+++|+||+||.|.+||||.++....
T Consensus 193 ~v~~wG~n~-~GqlG~g~~~~------~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 193 DLYGWGWGR-YGNLGLGDRTD------RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp CEEEEECCT-TSTTCSSSSCC------EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred CEEEeeCCC-CCCCCCCCCCC------cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence 589999996 99999986543 34677776554 68999999999999999999999999999999999998888
Q ss_pred cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEe
Q 045739 80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVT 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt 159 (189)
..|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+...+|++|+||.+|+++|+
T Consensus 266 ~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt 345 (406)
T 4d9s_A 266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 345 (406)
T ss_dssp EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEE
T ss_pred cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEe
Confidence 89999999888999999999999999999999999999999999999888888899998877789999999999999999
Q ss_pred cCCCEEEecCCCCCcccCCCCC-CCcccc
Q 045739 160 EKGKLYMWGNAKDSQLGVPGLP-VVQPCP 187 (189)
Q Consensus 160 ~~g~vy~wG~n~~gqlg~~~~~-~~~~~p 187 (189)
++|+||+||.|.+||||+++.. ...|++
T Consensus 346 ~~G~v~~wG~n~~GqLG~g~~~~~~~P~~ 374 (406)
T 4d9s_A 346 ERNNVFAWGRGTNGQLGIGESVDRNFPKI 374 (406)
T ss_dssp TTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CCCCEEEecCCCCCccCCCCCCCCcCCEE
Confidence 9999999999999999998753 334443
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.1e-41 Score=276.60 Aligned_cols=174 Identities=32% Similarity=0.616 Sum_probs=160.3
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG 79 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 79 (189)
+||+||.|. +||||.++... ...|+++..+. .+|++|+||..|+++|+++|+||+||.|.+||||.++....
T Consensus 141 ~v~~wG~n~-~GqLG~g~~~~------~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~ 213 (406)
T 4d9s_A 141 EVQSWGRNQ-NGQLGLGDTED------SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDR 213 (406)
T ss_dssp CEEEEECCT-TSTTCSSSCCC------EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCE
T ss_pred cEEEeCCCC-CccCCCCCCCC------cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCc
Confidence 589999996 99999986543 45677776554 68999999999999999999999999999999999998888
Q ss_pred cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEe
Q 045739 80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVT 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt 159 (189)
..|.++..+...+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+.+.+|++|+||.+|+++|+
T Consensus 214 ~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt 293 (406)
T 4d9s_A 214 LVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT 293 (406)
T ss_dssp EEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE
T ss_pred CccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEc
Confidence 89999998888999999999999999999999999999999999999888888999999888889999999999999999
Q ss_pred cCCCEEEecCCCCCcccCCCCC
Q 045739 160 EKGKLYMWGNAKDSQLGVPGLP 181 (189)
Q Consensus 160 ~~g~vy~wG~n~~gqlg~~~~~ 181 (189)
++|+||+||.|.+||||.+...
T Consensus 294 ~~G~v~~wG~n~~GqLG~g~~~ 315 (406)
T 4d9s_A 294 SDGKLYGWGWNKFGQVGVGNNL 315 (406)
T ss_dssp TTSCEEEEECCTTSTTCSSSSS
T ss_pred CCCeEEEeeCCCCCCCCCCCCC
Confidence 9999999999999999997653
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=273.61 Aligned_cols=181 Identities=33% Similarity=0.630 Sum_probs=162.2
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCc--ceeEEEeCCCcEEEecCCCCCccCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGG--FFTMVLTEEGQLWNWGANSNYELGRGDRV 77 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~--~h~~~lt~~g~v~~~G~n~~gqlg~~~~~ 77 (189)
+||+||.|. +||||.++... ...|+++..+. .+|++|+||. .|+++|+++|+||+||.|.+||||.+...
T Consensus 179 ~v~~wG~n~-~GqLG~~~~~~------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~ 251 (389)
T 3kci_A 179 DLYTWGKGR-YGRLGHSDSED------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD 251 (389)
T ss_dssp CEEEEECCG-GGTTCSSSCCC------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC
T ss_pred eEEEeCCCC-CCCcCCCCCcc------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC
Confidence 589999996 99999986543 45576665554 6899999995 89999999999999999999999999888
Q ss_pred CCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEE
Q 045739 78 GGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAA 157 (189)
Q Consensus 78 ~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~ 157 (189)
....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+.+.+|++|+||.+|+++
T Consensus 252 ~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~a 331 (389)
T 3kci_A 252 GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 331 (389)
T ss_dssp CEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred CccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEE
Confidence 88899999988888999999999999999999999999999999999998888889999998888899999999999999
Q ss_pred EecCCCEEEecCCCCCcccCCCCC-CCccccC
Q 045739 158 VTEKGKLYMWGNAKDSQLGVPGLP-VVQPCPV 188 (189)
Q Consensus 158 lt~~g~vy~wG~n~~gqlg~~~~~-~~~~~p~ 188 (189)
++++|+||+||.|++||||.+... ...|++|
T Consensus 332 l~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 363 (389)
T 3kci_A 332 CTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363 (389)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred ECCCCCEEEeeCCCCCcCCCCCCCCccCcEEe
Confidence 999999999999999999998764 3344443
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=272.07 Aligned_cols=174 Identities=36% Similarity=0.670 Sum_probs=159.5
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG 79 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 79 (189)
+||+||.|. +||||.++... ...|+++..+. .+|++|+||..|+++|+++|+||+||.|.+||||.++....
T Consensus 127 ~v~~wG~n~-~GqLG~g~~~~------~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 199 (389)
T 3kci_A 127 EVYSWGEAE-DGKLGHGNRSP------CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQ 199 (389)
T ss_dssp CEEEEECCG-GGTTCSSSCCC------EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred CEEEEeCCC-CCcCCCCCCcc------CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCccc
Confidence 589999996 99999986543 45677776654 58999999999999999999999999999999999999888
Q ss_pred cceeeeCCCCCCcEEEEEcCC--ceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEE
Q 045739 80 WKPKLLPNLVDVRIIQIANGG--YHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAA 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~i~~v~~g~--~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~ 157 (189)
..|.+++.+...+|++|+||. .|+++|+++|+||+||.|.++|||.+.......|.+++.+.+.+|++|+||.+|+++
T Consensus 200 ~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 200 LKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp EEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEE
T ss_pred ccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEE
Confidence 899999999999999999995 899999999999999999999999998888888999998888889999999999999
Q ss_pred EecCCCEEEecCCCCCcccCCCCC
Q 045739 158 VTEKGKLYMWGNAKDSQLGVPGLP 181 (189)
Q Consensus 158 lt~~g~vy~wG~n~~gqlg~~~~~ 181 (189)
|+++|+||+||.|.+||||.+...
T Consensus 280 lt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 280 LTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCC
T ss_pred EeCCCeEEEEeCCCCCCCCCCCCc
Confidence 999999999999999999997653
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.8e-40 Score=268.48 Aligned_cols=184 Identities=28% Similarity=0.529 Sum_probs=153.9
Q ss_pred CceEecCCCCCCcccCCCCCCCCCC-----CCcccCccccc------CCCCEEEEEcCcceeEEEeCCCcEEEecCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEA-----GGLSIPSKVKA------LPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNY 69 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~-----~~~~~p~~~~~------~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~g 69 (189)
+||+||.|. +||||.++....+.. .....|+.+.. ...+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 184 ~v~~wG~n~-~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~g 262 (413)
T 1a12_A 184 DLYTLGCGE-QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 262 (413)
T ss_dssp CEEEEECCT-TSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTS
T ss_pred CEEEeeCCC-CCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCc
Confidence 589999996 999999754322111 01234543332 235899999999999999999999999999999
Q ss_pred ccCCCCCCCCcceeeeCCCCC--CcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCC-CCCCccccEEeccccCccEE
Q 045739 70 ELGRGDRVGGWKPKLLPNLVD--VRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHS-FTQNQKVPMVIEALADEFVT 146 (189)
Q Consensus 70 qlg~~~~~~~~~~~~~~~~~~--~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~-~~~~~~~~~~~~~~~~~~i~ 146 (189)
|||.++......|..+..+.+ .+|++|+||.+|+++|+++|+||+||.|.++|||.+ .......|.+++.+. .|+
T Consensus 263 qLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~ 340 (413)
T 1a12_A 263 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVS 340 (413)
T ss_dssp TTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEE
T ss_pred CCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--cee
Confidence 999998888889999988776 679999999999999999999999999999999988 456677888888765 699
Q ss_pred EEEeeCCeeEEEecCCCEEEecCCCCCcccCCCCC-CCcccc
Q 045739 147 HIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLP-VVQPCP 187 (189)
Q Consensus 147 ~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~-~~~~~p 187 (189)
+|+||.+|+++++++|+||+||.|.+||||.++.. ...|++
T Consensus 341 ~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~ 382 (413)
T 1a12_A 341 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVE 382 (413)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEE
T ss_pred EEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeE
Confidence 99999999999999999999999999999998753 333443
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.6e-39 Score=261.86 Aligned_cols=176 Identities=26% Similarity=0.419 Sum_probs=148.7
Q ss_pred CceEecC--CCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCC
Q 045739 1 ELYTWGR--DEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVG 78 (189)
Q Consensus 1 ~v~~wG~--n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~ 78 (189)
+||+||. |. +||||.++... ....|.++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 131 ~v~~wG~~~n~-~GqlG~~~~~~-----~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~ 203 (413)
T 1a12_A 131 RVFLWGSFRDN-NGVIGLLEPMK-----KSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELF 203 (413)
T ss_dssp CEEEEECEEET-TEEEESSBBTB-----CEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGT
T ss_pred cEEEeeCCcCC-CCccCcCCccc-----cccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccc
Confidence 5899999 85 99999875432 123466663 346999999999999999999999999999999999875321
Q ss_pred -----------CcceeeeCCC-----CCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccC
Q 045739 79 -----------GWKPKLLPNL-----VDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALAD 142 (189)
Q Consensus 79 -----------~~~~~~~~~~-----~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~ 142 (189)
...|..+... ...+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+.+
T Consensus 204 ~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~ 283 (413)
T 1a12_A 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN 283 (413)
T ss_dssp SSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCC
T ss_pred ccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccC
Confidence 1355555543 446899999999999999999999999999999999998888888999987766
Q ss_pred --ccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCCCCC
Q 045739 143 --EFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVV 183 (189)
Q Consensus 143 --~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~~~ 183 (189)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus 284 ~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~ 326 (413)
T 1a12_A 284 STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE 326 (413)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC
T ss_pred CCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCcc
Confidence 67999999999999999999999999999999999854333
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-38 Score=260.86 Aligned_cols=169 Identities=30% Similarity=0.548 Sum_probs=144.1
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCC--
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVG-- 78 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~-- 78 (189)
+||+||.|. +||||.++... ....|+.+..+. +|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 44 ~v~~wG~n~-~GqLG~g~~~~-----~~~~p~~v~~l~-~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 116 (423)
T 3mvd_K 44 NVLVCGNGD-VGQLGLGEDIL-----ERKRLSPVAGIP-DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116 (423)
T ss_dssp EEEEEEECT-TSTTCSCSSCC-----EEEEEEECCSCS-SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS
T ss_pred cEEEEeCCC-CCCCCCCCCCc-----cCcCCeEccCCC-CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc
Confidence 489999995 99999985421 234566666544 799999999999999999999999999999999987654
Q ss_pred CcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEec--CCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeE
Q 045739 79 GWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGY--GGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSA 156 (189)
Q Consensus 79 ~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~--~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~ 156 (189)
...|.++.. ..+|++|+||..|+++|+++|+||+||. |.++|||.........|.++ +...+|++|+||.+|++
T Consensus 117 ~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G~~hs~ 192 (423)
T 3mvd_K 117 ESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLV 192 (423)
T ss_dssp SSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES--STTCCEEEEEECSSEEE
T ss_pred ccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecCCCeEE
Confidence 456777663 3479999999999999999999999999 99999998876666555444 55678999999999999
Q ss_pred EEecCCCEEEecCCCCCcccCCCC
Q 045739 157 AVTEKGKLYMWGNAKDSQLGVPGL 180 (189)
Q Consensus 157 ~lt~~g~vy~wG~n~~gqlg~~~~ 180 (189)
+|+++|+||+||.|.+||||.+..
T Consensus 193 alt~~G~v~~wG~n~~GqLG~~~~ 216 (423)
T 3mvd_K 193 ILTTAGKVFTVGCAEQGQLGRLSE 216 (423)
T ss_dssp EEETTSCEEEEECCTTSTTSSCCT
T ss_pred EEecCCeEEEeeCCcCCccCCCcc
Confidence 999999999999999999999764
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=262.49 Aligned_cols=181 Identities=25% Similarity=0.351 Sum_probs=147.1
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCC---
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRV--- 77 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~--- 77 (189)
+||+||.|. +||||.+...... .....|.++.. .+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 224 ~v~~wG~n~-~GqLG~~~~~~~~--~~~~~p~~~~~--~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~ 298 (473)
T 3of7_A 224 MVFAWGNGQ-QNQLGRKVMERFR--LKTLDPRPFGL--RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298 (473)
T ss_dssp CEEEEECCT-TSTTSSCCCGGGT--TTTCSCEECSC--CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTT
T ss_pred eEEEEeCCC-CCCCCCCcccccc--ccccCceecCC--cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCC
Confidence 589999996 9999998654311 12334554432 489999999999999999999999999999999988754
Q ss_pred -CCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCC--------------CccccEEeccccC
Q 045739 78 -GGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQ--------------NQKVPMVIEALAD 142 (189)
Q Consensus 78 -~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~--------------~~~~~~~~~~~~~ 142 (189)
....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|.++..+
T Consensus 299 ~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~-- 376 (473)
T 3of7_A 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV-- 376 (473)
T ss_dssp CEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS--
T ss_pred ceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC--
Confidence 2357888888888899999999999999999999999999999999976421 12344555433
Q ss_pred ccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCCC--CCccccC
Q 045739 143 EFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLP--VVQPCPV 188 (189)
Q Consensus 143 ~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~--~~~~~p~ 188 (189)
..|++|+||.+|+++|+++|+||+||.|.+||||+++.. ...|++|
T Consensus 377 ~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v 424 (473)
T 3of7_A 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRI 424 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEEC
T ss_pred CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEe
Confidence 269999999999999999999999999999999998833 3445444
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-37 Score=255.39 Aligned_cols=183 Identities=27% Similarity=0.410 Sum_probs=149.7
Q ss_pred CceEecCCCCCCcccCCCCCCCCC-----CCCcccCcccccCC-CCEEEEEcCcceeEEE-eCCCcEEEecCCCCCccCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNE-----AGGLSIPSKVKALP-VPVAAVSCGGFFTMVL-TEEGQLWNWGANSNYELGR 73 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~-----~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~l-t~~g~v~~~G~n~~gqlg~ 73 (189)
+||+||.|. +||||.++...... ......|.++.... .+|++|+||..|++++ +++|+||+||.|.++|||.
T Consensus 199 ~v~~wG~n~-~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~ 277 (423)
T 3mvd_K 199 KVFTVGCAE-QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAH 277 (423)
T ss_dssp CEEEEECCT-TSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSS
T ss_pred eEEEeeCCc-CCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCC
Confidence 589999996 99999986543221 22345666665443 6899999999999999 6999999999999999999
Q ss_pred CCCCCCc--ceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCC-ccccEEeccccCccEEEEEe
Q 045739 74 GDRVGGW--KPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQN-QKVPMVIEALADEFVTHIAC 150 (189)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~-~~~~~~~~~~~~~~i~~v~~ 150 (189)
+...... .|.++. ..+|++|+||.+|+++|+++|+||+||.|.++|||.+.... ...|.+++.+.. +|++|+|
T Consensus 278 ~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~ 353 (423)
T 3mvd_K 278 ETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGC 353 (423)
T ss_dssp CCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEE
T ss_pred CCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEc
Confidence 6554433 444443 35799999999999999999999999999999999987655 457888877765 8999999
Q ss_pred eCCeeEEEecCCCEEEecCCCCCcccCCCCC-CCccccC
Q 045739 151 GGSTSAAVTEKGKLYMWGNAKDSQLGVPGLP-VVQPCPV 188 (189)
Q Consensus 151 g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~~-~~~~~p~ 188 (189)
|.+|+++|+++|+||+||.|.+||||.++.. ...|++|
T Consensus 354 G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 392 (423)
T 3mvd_K 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392 (423)
T ss_dssp ETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEEC
T ss_pred CCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEE
Confidence 9999999999999999999999999998763 4445444
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=262.28 Aligned_cols=176 Identities=28% Similarity=0.544 Sum_probs=146.1
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccC---CCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCC
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKAL---PVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRV 77 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~---~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~ 77 (189)
+||+||.|. +||||.++.... .....|+.++.+ ..+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 30 ~v~~wG~n~-~GqLG~G~~~~~---~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~ 105 (473)
T 3of7_A 30 DIFCWGTGS-MCELGLGPLAKN---KEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSN 105 (473)
T ss_dssp EEEEEEECT-TSTTCSCSCGGG---GEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC-
T ss_pred cEEEEcCCC-CCccCCCCCccc---ccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcc
Confidence 489999995 999999975321 113344444333 3689999999999999999999999999999999988654
Q ss_pred C-----------------------CcceeeeCC--C----CCCcEEEEEcCCceEEEEeCCCCEEEEec--CCCCCCCCC
Q 045739 78 G-----------------------GWKPKLLPN--L----VDVRIIQIANGGYHSLALTDDGKVFSWGY--GGHGQLGHS 126 (189)
Q Consensus 78 ~-----------------------~~~~~~~~~--~----~~~~i~~v~~g~~~t~~l~~~g~vy~~G~--~~~gq~g~~ 126 (189)
. ...|.+++. + ...+|++|+||..|+++|+++|+||+||. +.++|||..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~ 185 (473)
T 3of7_A 106 AKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFY 185 (473)
T ss_dssp --------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESB
T ss_pred cccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCC
Confidence 4 346777764 4 36799999999999999999999999998 678999974
Q ss_pred CC--CCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCC
Q 045739 127 FT--QNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL 180 (189)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 180 (189)
.. .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 186 ~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~ 241 (473)
T 3of7_A 186 QDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVM 241 (473)
T ss_dssp TTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCC
T ss_pred CCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcc
Confidence 33 3566788888888888999999999999999999999999999999999754
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.2e-33 Score=215.43 Aligned_cols=114 Identities=28% Similarity=0.461 Sum_probs=71.2
Q ss_pred CEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCC
Q 045739 40 PVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 40 ~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~ 119 (189)
+|++|+||..|+++|+ +|+||+||.|.++||+.. .....+|++|+||..|+++|+ +|+||+||.+.
T Consensus 103 ~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~------------~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP------------AEAQSGVTALDGGVYTALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC------------GGGGSSEEEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred CeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC------------ccCCCCeEEEEcccCEEEEEE-CCEEEEecCCC
Confidence 4555555555555555 555555555555555421 111234555555555555555 45566666555
Q ss_pred CCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCC
Q 045739 120 HGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL 180 (189)
Q Consensus 120 ~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~ 180 (189)
++|++.+ .....+|++|+||.+|+++| ++|+||+||.|.+||||++.+
T Consensus 169 ~gqlg~p------------~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~ 216 (282)
T 3qhy_B 169 FGQTTVP------------AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE 216 (282)
T ss_dssp TSTTSCC------------GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG
T ss_pred CCCCCCc------------eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc
Confidence 5555421 11125699999999999999 899999999999999987643
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.5e-32 Score=212.17 Aligned_cols=134 Identities=31% Similarity=0.544 Sum_probs=112.3
Q ss_pred CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCc
Q 045739 1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGW 80 (189)
Q Consensus 1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~ 80 (189)
+||+||.|. +||||. |.... .+|++|+||..|+++|+ +|+||+||.|.+||||.
T Consensus 43 ~v~~wG~n~-~Gqlg~--------------p~~~~---~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------- 96 (282)
T 3qhy_B 43 KVLGWGANL-NGQLTM--------------PAATQ---SGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------- 96 (282)
T ss_dssp EEEEEECCS-SSTTSC--------------CGGGG---SCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-------
T ss_pred EEEEEeCCC-CCCCCC--------------CccCC---CCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-------
Confidence 489999996 999994 32222 27999999999999996 99999999999999985
Q ss_pred ceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEec
Q 045739 81 KPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTE 160 (189)
Q Consensus 81 ~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~ 160 (189)
|.++ ..+|++|+||.+|+++|+ +|+||+||.|.++|++.+. ....+|++|+||.+|+++++
T Consensus 97 -P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~- 157 (282)
T 3qhy_B 97 -PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK- 157 (282)
T ss_dssp -CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-
T ss_pred -Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-
Confidence 2222 247999999999999999 9999999999999997421 12245999999999999999
Q ss_pred CCCEEEecCCCCCcccCCC
Q 045739 161 KGKLYMWGNAKDSQLGVPG 179 (189)
Q Consensus 161 ~g~vy~wG~n~~gqlg~~~ 179 (189)
+|+||+||.|.+||||.+.
T Consensus 158 ~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp TTEEEEEECCTTSTTSCCG
T ss_pred CCEEEEecCCCCCCCCCce
Confidence 7999999999999998753
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=97.09 E-value=0.0018 Score=48.80 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=66.4
Q ss_pred CcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCC
Q 045739 91 VRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 91 ~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
..+-.|+-...|++++--+++|+.||+++.||+-..... .+...+.+|.++++-+..-..+--||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 468889999999999999999999999999998543222 4588899999999999999999999987
Q ss_pred CCCcc---cCCCC-CCCcccc
Q 045739 171 KDSQL---GVPGL-PVVQPCP 187 (189)
Q Consensus 171 ~~gql---g~~~~-~~~~~~p 187 (189)
--..| |-+.. +.+.|+|
T Consensus 376 PDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 376 PDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp TTSTTCCTTCCSBCCCCCCCC
T ss_pred CCcceeecCccceeeeccCCC
Confidence 76666 33333 3666666
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.62 E-value=0.0051 Score=46.45 Aligned_cols=72 Identities=25% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 39 VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
..|..|+.-+.|.+++--+++++.+|+++.|||-..... .+...+.+|.++|+-+..-+.+-.||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 468889999999999999999999999999998543222 3588999999999999999999999988
Q ss_pred CCCCC
Q 045739 119 GHGQL 123 (189)
Q Consensus 119 ~~gq~ 123 (189)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65444
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.69 E-value=3.4 Score=34.99 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=31.9
Q ss_pred eEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEE----EeeCCeeEEEecCCCEEEecC
Q 045739 102 HSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHI----ACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 102 ~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v----~~g~~~~~~lt~~g~vy~wG~ 169 (189)
+++++..+|+||++|-.....+ .+-.+.......+ ..-.+|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v------------~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKT------------SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCE------------EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCCce------------EEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 3466778999999996532110 0000111111111 133467877777899999996
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.67 E-value=3.8 Score=35.19 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=33.2
Q ss_pred cceeEEEeC-CCcEEEecCCCCCccCCCCCC----CCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCC
Q 045739 48 GFFTMVLTE-EGQLWNWGANSNYELGRGDRV----GGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 48 ~~h~~~lt~-~g~v~~~G~n~~gqlg~~~~~----~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~ 119 (189)
..|+++... +|+||++|-.....--..+.. .......+..+. ..-..|++++..+|+||++|-..
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG~~ 510 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGGVT 510 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECCBC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECCCC
Confidence 468887776 899999994321110000000 000111122111 12346777765689999998543
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.53 E-value=11 Score=32.44 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=33.2
Q ss_pred CceEEEEeC-CCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEE----EeeCCeeEEEecCCCEEEecCC
Q 045739 100 GYHSLALTD-DGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHI----ACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 100 ~~~t~~l~~-~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v----~~g~~~~~~lt~~g~vy~wG~n 170 (189)
..|++++.. +|+||++|-.....-.. .+. ...+ +.......+ ..-..|++++..+++||++|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~---~dv---~~yd-~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGL---SDN---WIFD-MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBC---CCC---EEEE-TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcc---ccE---EEEe-CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 367777776 88999998543211000 000 0000 111111111 1334677777668999999854
No 18
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=80.06 E-value=19 Score=27.85 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=68.7
Q ss_pred EEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC-----CceEEEEeCCCCEEEE
Q 045739 41 VAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG-----GYHSLALTDDGKVFSW 115 (189)
Q Consensus 41 i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g-----~~~t~~l~~~g~vy~~ 115 (189)
-..++.+..+.+++|+.|++|..-..+--..+.... .......++...+++|..+..- ..+.+++|++|.+.-.
T Consensus 43 ~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 43 AMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL-GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC-CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 345677888999999999999987655443333211 1111122333455677765432 2357788999988766
Q ss_pred ecCCCCCCCCCCCCCccccEEeccccCccEEE--EEeeCCeeEEEecCCCEEEecCC
Q 045739 116 GYGGHGQLGHSFTQNQKVPMVIEALADEFVTH--IACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 116 G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~--v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
-..++..... ..-..-.++. .+..++. +..+.++.+++|++|.++-+-.+
T Consensus 122 ~l~e~~~~~r---~~G~~ai~l~--e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ 173 (323)
T 1wp5_A 122 ELKHYKAQRY---SKPLTGINLK--NDDQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp EGGGGCCSCC---SSCEECSCCC--TTCCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred EHHHhhhccc---cCceEEEEeC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 5544432110 0000000111 1122333 23356788899999998865443
No 19
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.27 E-value=20 Score=27.74 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=70.0
Q ss_pred EEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC-----ceEEEEeCCCCEEEE
Q 045739 41 VAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG-----YHSLALTDDGKVFSW 115 (189)
Q Consensus 41 i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~-----~~t~~l~~~g~vy~~ 115 (189)
....+....+.+++|+.|++|..--.+.-..+... ........++...+++|..+..-. ...+++|.+|.+.-.
T Consensus 46 ~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~ 124 (327)
T 3uc1_A 46 HFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 124 (327)
T ss_dssp EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEe
Confidence 34456677788889999999987644433332211 111111234444567888876543 467888999988766
Q ss_pred ecCCCCCCCCCCCCCccccEEeccccCccEEEE--EeeCCeeEEEecCCCEEEecCC
Q 045739 116 GYGGHGQLGHSFTQNQKVPMVIEALADEFVTHI--ACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 116 G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~wG~n 170 (189)
-..+|..-.. .-.....++ ++..+..+ +.+..+.+++|++|++|-+-..
T Consensus 125 ~l~~~~~~~r----~G~~~i~lk--e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 125 KLTDFDSNRS----GGIVAVNLR--DNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp EGGGGCCCCS----SCEESCBCC--TTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred EHHHhhcccc----CceEEEEEC--CCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 5444321110 000011111 12233333 3456778899999999988766
No 20
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.01 E-value=27 Score=27.55 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=72.1
Q ss_pred EEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC-----CceEEEEeCCCCEEEEe
Q 045739 42 AAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG-----GYHSLALTDDGKVFSWG 116 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g-----~~~t~~l~~~g~vy~~G 116 (189)
..++.+..+.+++|+.|++|.+--..--..++.... ......++...+.+|+.+..- ..+.+++|++|.+.-.-
T Consensus 51 ~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G-~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~ 129 (370)
T 3l6v_A 51 LWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG-RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTP 129 (370)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC-cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeE
Confidence 455566777888999999998865544333322211 111122333456778877553 34678889999887665
Q ss_pred cCCCCCCCCCCCCCccccEEeccccCccEEE--EEeeCCeeEEEecCCCEEEe--------cCCCCCcccC
Q 045739 117 YGGHGQLGHSFTQNQKVPMVIEALADEFVTH--IACGGSTSAAVTEKGKLYMW--------GNAKDSQLGV 177 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~--v~~g~~~~~~lt~~g~vy~w--------G~n~~gqlg~ 177 (189)
..+|..... .-..-.+++. +..++. +..+....+++|++|++.-+ |++..|--++
T Consensus 130 l~e~~~~~~----~G~~ai~L~~--~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i 194 (370)
T 3l6v_A 130 LSEFAFRLA----RGKIAINLDE--GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGI 194 (370)
T ss_dssp GGGGCSCCT----TCEESSCCCT--TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred HHHhhcccC----CceEEEEeCC--CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeE
Confidence 554432110 0000111111 122332 33456788899999998765 6666665443
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=75.90 E-value=35 Score=28.75 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEE----eeCCeeE-EEecCCCEEEecCCCCC
Q 045739 101 YHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIA----CGGSTSA-AVTEKGKLYMWGNAKDS 173 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~----~g~~~~~-~lt~~g~vy~wG~n~~g 173 (189)
.|++++..+|+||++|-...+.. .............+ +...+...+. ....|++ ++..+|+||+.|-+.++
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 57777777999999986543321 00011111111111 1112222221 2345664 45578999999987654
No 22
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=75.63 E-value=14 Score=27.42 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=11.4
Q ss_pred CeeEEEecCCCEEEecC
Q 045739 153 STSAAVTEKGKLYMWGN 169 (189)
Q Consensus 153 ~~~~~lt~~g~vy~wG~ 169 (189)
.|++++. +++||+.|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 5665555 678999985
No 23
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=73.00 E-value=9.6 Score=30.35 Aligned_cols=107 Identities=8% Similarity=0.050 Sum_probs=57.3
Q ss_pred cceeEEEeCCCcEEEecCCCCCccCCCC--------CCCCcce-eeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 48 GFFTMVLTEEGQLWNWGANSNYELGRGD--------RVGGWKP-KLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 48 ~~h~~~lt~~g~v~~~G~n~~gqlg~~~--------~~~~~~~-~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
....++++....++..|.++.-.+.... ....+.+ ..++ +.. |.+|++ ....+++.+++.|..|=-.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD--VIFVCF-HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT--EEEEEE-ETTEEEEEESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC--eeEEEE-CCCEEEEEcCCcEEEEEch
Confidence 3566777777666666655432221100 0001233 2222 333 888888 6667777788888888544
Q ss_pred CCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCC
Q 045739 119 GHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 119 ~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
+..+. ....... ..+.++.+-....++++++|.|++|=-.
T Consensus 115 sl~~~-----------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 115 ELSEF-----------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp STTCE-----------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred hhhcc-----------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 33211 0111111 2345555555556777888999988443
No 24
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=72.24 E-value=25 Score=25.47 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=11.4
Q ss_pred ceEEEEeCCCCEEEEecC
Q 045739 101 YHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 101 ~~t~~l~~~g~vy~~G~~ 118 (189)
-..++++.+|++|+....
T Consensus 209 p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 209 PIGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEEECTTCCEEEEECS
T ss_pred CcEEEECCCCCEEEEeCC
Confidence 345666777777776543
No 25
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.17 E-value=30 Score=26.39 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=66.5
Q ss_pred EEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC-----CceEEEEeCCCCEEEEe
Q 045739 42 AAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG-----GYHSLALTDDGKVFSWG 116 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g-----~~~t~~l~~~g~vy~~G 116 (189)
..++.+..+.+++|+.|++|..--..--..+..... ......++...+.+|..+... ..+.++++++|.++-.-
T Consensus 52 ~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~ 130 (312)
T 1suu_A 52 ALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFE 130 (312)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEE
Confidence 345667788999999999998865433222222111 111123344456677777553 45678889999999876
Q ss_pred cCCCCCCCCCCCCCccccEE-eccccCccEEEEEe--eCCeeEEEecCCCEEEecC
Q 045739 117 YGGHGQLGHSFTQNQKVPMV-IEALADEFVTHIAC--GGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~-~~~~~~~~i~~v~~--g~~~~~~lt~~g~vy~wG~ 169 (189)
..++.... ..... +..-.+..++.+.. +..+.+++|++|.+.-+-.
T Consensus 131 l~~~~~~r-------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 131 STDFKAVK-------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp GGGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred HHHhhccC-------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence 65542211 00001 11112234444433 3567888899988775544
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=71.37 E-value=34 Score=26.66 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=42.1
Q ss_pred CCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEec
Q 045739 38 PVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGY 117 (189)
Q Consensus 38 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~ 117 (189)
...|..++......+.-..||.|..|-...... ...+. .....|..++......+.-..+|.|.+|=.
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeC
Confidence 346777777555555566777888775432110 01111 123457778777777777788999999954
Q ss_pred C
Q 045739 118 G 118 (189)
Q Consensus 118 ~ 118 (189)
.
T Consensus 241 ~ 241 (435)
T 1p22_A 241 A 241 (435)
T ss_dssp S
T ss_pred C
Confidence 3
No 27
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=70.99 E-value=30 Score=25.91 Aligned_cols=117 Identities=10% Similarity=0.050 Sum_probs=67.1
Q ss_pred CEEEEE--cCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEEE
Q 045739 40 PVAAVS--CGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFSW 115 (189)
Q Consensus 40 ~i~~i~--~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~~ 115 (189)
.+..+. .+..+.+++|++|++|.+-..+.-..|+..... ..+....+.+|+.+... ..+.++++++|.+.-.
T Consensus 117 ~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv----~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 117 EVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV----QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKI 192 (276)
T ss_dssp CEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE----EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEe
Confidence 454443 355679999999999998766555544432221 12333345667766443 3467788999998777
Q ss_pred ecCCCCCCCCCCCCCccccEEeccccCccEEEEE--eeCCeeEEEecCCCEEE
Q 045739 116 GYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIA--CGGSTSAAVTEKGKLYM 166 (189)
Q Consensus 116 G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~--~g~~~~~~lt~~g~vy~ 166 (189)
-..++.....+..-... + ..+..+..+. .+.+..+++|++|.+.-
T Consensus 193 ~~~e~~~~~R~gkGv~~----i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 193 SHEEIPKTNRGVKGTEV----S--GTKDTLVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp EGGGSCCCCTTCCCEEC----C--CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred EHHHcccCCCCCcceEE----E--cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence 65555433322111000 0 1122344332 24567888899999877
No 28
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=70.90 E-value=19 Score=27.42 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=13.1
Q ss_pred CCeeEEEecCCCEEEecCC
Q 045739 152 GSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~wG~n 170 (189)
..|++++ .+++||++|--
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 57899999953
No 29
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=70.16 E-value=16 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=12.9
Q ss_pred cceeEEEeCCCcEEEecC
Q 045739 48 GFFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 48 ~~h~~~lt~~g~v~~~G~ 65 (189)
+.+..+...+++||++|-
T Consensus 47 r~~~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 47 RNHSSIVTQQNQVYVVGG 64 (318)
T ss_dssp SSEEEEECSSSCEEEEES
T ss_pred ccceEEEEECCEEEEECC
Confidence 344455667899999995
No 30
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=70.04 E-value=21 Score=26.48 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=11.8
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|++++ -+++||++|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 455555 46799999953
No 31
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=68.68 E-value=15 Score=27.45 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=11.7
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|+++. -+++||++|-.
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 455544 66799999953
No 32
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.04 E-value=38 Score=25.80 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=66.5
Q ss_pred EEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEc-----CCceEEEEeCCCCEEEEe
Q 045739 42 AAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIAN-----GGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~-----g~~~t~~l~~~g~vy~~G 116 (189)
..++.+..+.+++|+.|++|..-..+--..+... ........++...+++|..+.. ...+.+++|++|.+.-.-
T Consensus 47 ~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 47 LLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA-RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS-CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC-CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Confidence 4466778899999999999988765543333221 1111112233345667777744 233567789999887664
Q ss_pred cCCCCCCCCCCCCCccccEE-eccccCccEEEE--EeeCCeeEEEecCCCEEEecC
Q 045739 117 YGGHGQLGHSFTQNQKVPMV-IEALADEFVTHI--ACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~-~~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~wG~ 169 (189)
..++..... .... ++.-.+..+..+ ..+....+++|++|.++-+-.
T Consensus 126 l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 126 LTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKE 174 (307)
T ss_dssp GGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred HHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEH
Confidence 443322110 0001 111112233333 234567888999999876543
No 33
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=66.38 E-value=47 Score=26.31 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 37 LPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 37 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
... |..+++ ....+++.+++.|+.|--....+.. ..+.+ ...+.++.+-....++++++|.|++|=
T Consensus 87 lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVTSF-EKPVFQLKNVNNTLVILNSVNDLSALD 152 (388)
T ss_dssp CTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEEEC-SSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred CCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------cccee-ecceeeEEecCCCEEEEECCCCEEEEE
Confidence 444 999999 7788888889999999755433211 11111 123556666555577789999999994
Q ss_pred cCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEe
Q 045739 117 YGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMW 167 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~w 167 (189)
..+. ++ . .+. ..|+.|+-...-.++...+|++..|
T Consensus 153 l~~~-~~---------~--~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 153 LRTK-ST---------K--QLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TTTC-CE---------E--EEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ccCC-cc---------c--ccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 3321 11 0 111 2366665555554444556665555
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=65.79 E-value=46 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=15.2
Q ss_pred cEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 92 RIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 92 ~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
.+..++......+.-..+|.|+.|-
T Consensus 241 ~v~~~~~~~~~l~~~~~dg~i~iwd 265 (445)
T 2ovr_B 241 AVRCVQYDGRRVVSGAYDFMVKVWD 265 (445)
T ss_dssp CEEEEEECSSCEEEEETTSCEEEEE
T ss_pred cEEEEEECCCEEEEEcCCCEEEEEE
Confidence 4555555555555556677777774
No 35
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=65.46 E-value=46 Score=25.90 Aligned_cols=110 Identities=10% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecC
Q 045739 39 VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~ 118 (189)
..|..++....+.+.-..+|.|..|-......+ ..+. .....+..++......+.-..+|.|..|-..
T Consensus 280 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI-----------HTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEETTTCCEE-----------EEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CceEEEEECCCEEEEEeCCCeEEEEECCCCCEE-----------EEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 456666665555555566677777653321100 0111 1123455565556666666788888888443
Q ss_pred CCCCCCCCCCCCccccEEecc--ccCccEEEEEeeCCeeEEEecCCCEEEecCCC
Q 045739 119 GHGQLGHSFTQNQKVPMVIEA--LADEFVTHIACGGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 119 ~~gq~g~~~~~~~~~~~~~~~--~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~ 171 (189)
.... ...+.. .....|..++....+.+.-+.+|.|..|-..+
T Consensus 348 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 348 TGQC-----------LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp TCCE-----------EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCcE-----------EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 2110 011111 12234666666666666667788888887654
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=62.04 E-value=54 Score=25.50 Aligned_cols=113 Identities=5% Similarity=0.041 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 37 LPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 37 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
....|..++......+.-..+|.|..|-...... .............|..++......+.-..||.|.+|=
T Consensus 212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEE
Confidence 3457888888777777778899999996433211 1111111222345777777667777778889999885
Q ss_pred cCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCC
Q 045739 117 YGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
......+ ..+. .....|..+.......+.-..+|.|..|=..
T Consensus 283 ~~~~~~~-----------~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 283 TSTCEFV-----------RTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp TTTCCEE-----------EEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred CCcCcEE-----------EEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4321110 0111 1112344444444555555556666666543
No 37
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=61.60 E-value=37 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=11.4
Q ss_pred ceeEEEeCCCcEEEecC
Q 045739 49 FFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~ 65 (189)
.|+++.. +++||++|-
T Consensus 54 ~~~~~~~-~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVYM-AGLVFAVGG 69 (302)
T ss_dssp SCEEEEE-TTEEEEESC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4555544 789999994
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.70 E-value=57 Score=25.01 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=56.8
Q ss_pred EEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC--ceEEEEeCCCCEEEEecCCC
Q 045739 43 AVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG--YHSLALTDDGKVFSWGYGGH 120 (189)
Q Consensus 43 ~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~--~~t~~l~~~g~vy~~G~~~~ 120 (189)
.++....+.++...+|.|+.|-...... ...........|..|+... .+.++-..+|.|..|-....
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~~-----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADSGSV-----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCE-----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeecCCCEEEEECCCeEEEeeCCCCcE-----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 3665567788889999999997543111 1111221334566665543 34455567889999854321
Q ss_pred CCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCC
Q 045739 121 GQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 121 gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n 170 (189)
..+ ..+. .....|..+....+..+.-..+|.|+.|=..
T Consensus 167 ~~~-----------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 167 TKL-----------RTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CEE-----------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred eEE-----------EEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 110 1111 1123355555555555555566667776554
No 39
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=57.90 E-value=54 Score=24.22 Aligned_cols=120 Identities=12% Similarity=0.061 Sum_probs=64.9
Q ss_pred EEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEEEecCCC
Q 045739 43 AVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFSWGYGGH 120 (189)
Q Consensus 43 ~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~~G~~~~ 120 (189)
..+.+..+.+++|+.|++|..-..+.-.. . .........++...+.+|+.+... ..+.+++|++|.+.-.-..++
T Consensus 39 ~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r--~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 39 VKGKSNQPVVFVDSTGRSYAIDPITLPSA-R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EEEETTSCEEEEETTSEEEEECGGGSCCS-S--SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 34556778999999999999875543111 1 111111113344456788888663 345677899998876655444
Q ss_pred CCCCCCCCCCccccEEeccccCccEEEE-E--eeCCeeEEEecCCCEEEecCCC
Q 045739 121 GQLGHSFTQNQKVPMVIEALADEFVTHI-A--CGGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 121 gq~g~~~~~~~~~~~~~~~~~~~~i~~v-~--~g~~~~~~lt~~g~vy~wG~n~ 171 (189)
....... ..-..++ .+..++.+ . .+.++.+++|++|.+.-+-.++
T Consensus 116 ~~~~r~G----~~~i~L~--~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 116 VARNRAG----KALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CCCSTTC----EECBCCC--TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred cccCcCc----eEEEEEC--CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 2211100 0001111 11122222 2 2567888889999877654433
No 40
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=57.02 E-value=17 Score=27.08 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=11.9
Q ss_pred CeeEEEecCCCEEEecCC
Q 045739 153 STSAAVTEKGKLYMWGNA 170 (189)
Q Consensus 153 ~~~~~lt~~g~vy~wG~n 170 (189)
.|++++. +++||++|-.
T Consensus 255 ~~~~~~~-~~~i~v~GG~ 271 (308)
T 1zgk_A 255 ALGITVH-QGRIYVLGGY 271 (308)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceEEEEE-CCEEEEEcCc
Confidence 5565554 6799999853
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=55.90 E-value=56 Score=23.75 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=37.6
Q ss_pred EEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCc-eEEEEeCCCCEEEEecC
Q 045739 44 VSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGY-HSLALTDDGKVFSWGYG 118 (189)
Q Consensus 44 i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~-~t~~l~~~g~vy~~G~~ 118 (189)
+..+.-..++++.+|++...+...................... ....|..++.... ..++...+|.|..|-..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECC
Confidence 4455667889999999998886554332211111111111111 2234555544332 22333348888888554
No 42
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=55.41 E-value=33 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=11.8
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|++++. +++||++|-.
T Consensus 55 ~~~~~~~-~~~l~v~GG~ 71 (301)
T 2vpj_A 55 YVASVSL-HDRIYVIGGY 71 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cccEEEE-CCEEEEEcCC
Confidence 4555554 5799999954
No 43
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=53.96 E-value=62 Score=23.68 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=11.7
Q ss_pred ceeEEEeCCCcEEEecCC
Q 045739 49 FFTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n 66 (189)
.|+++.. +++||++|-.
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 4555544 6899999943
No 44
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.07 E-value=82 Score=23.93 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=59.3
Q ss_pred ceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEE--EEcCCceEEEEeCCCCEEEEecCCCCCCCCC
Q 045739 49 FFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQ--IANGGYHSLALTDDGKVFSWGYGGHGQLGHS 126 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~--v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~ 126 (189)
...+.+|.+|.+---=...+.....+.. ....+....+..+.. ++.+..+.++++++|++|.+--.+....+..
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3467788998887543333321111100 011112222233333 4556678889999999998876654443321
Q ss_pred CCCCccccEEeccccCccEEEEEee-----CCeeEEEecCCCEEEecC
Q 045739 127 FTQNQKVPMVIEALADEFVTHIACG-----GSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~i~~v~~g-----~~~~~~lt~~g~vy~wG~ 169 (189)
..- ......++...++.|..+... ..+.+++|++|.++-.-.
T Consensus 85 ~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 85 SKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred CCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 100 000111222344567776654 345788899998886543
No 45
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=46.02 E-value=70 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=8.8
Q ss_pred eEEEEeCCCCEEEEe
Q 045739 102 HSLALTDDGKVFSWG 116 (189)
Q Consensus 102 ~t~~l~~~g~vy~~G 116 (189)
..++++.+|++|+..
T Consensus 153 ~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCEEECTTCCEEEEE
T ss_pred eeEEEeCCCCEEEEE
Confidence 345566666666653
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=43.55 E-value=1.1e+02 Score=23.65 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEEEe
Q 045739 39 VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFSWG 116 (189)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~~G 116 (189)
..+..++......+.-..+|.|..|-......+ ..+. .....|..++.. ....+.-..||.|+.|-
T Consensus 271 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-----------~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL-----------YILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEE-----------EEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 467777766677777788999999965331110 1111 122345555443 34555667888898884
Q ss_pred cCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCC
Q 045739 117 YGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~ 171 (189)
... +++ ...+. .....|..+.....+.+.-..+|.|..|=.++
T Consensus 339 ~~~-~~~----------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 339 LEN-GEL----------MYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTT-TEE----------EEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCC-CcE----------EEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 332 110 00111 11233555555555555556677777776554
No 47
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=38.23 E-value=1.2e+02 Score=22.52 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=68.6
Q ss_pred CCCEEEEEc---CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEc--CCceEEEEeCCCCE
Q 045739 38 PVPVAAVSC---GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIAN--GGYHSLALTDDGKV 112 (189)
Q Consensus 38 ~~~i~~i~~---G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~--g~~~t~~l~~~g~v 112 (189)
+.+|+.+.+ .....+++|++|.+.-.=...+.+- + . ....+....+..+..+.. +..+.++++++|++
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~----~-~--G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~ 139 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK----A-Q--GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRV 139 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC----S-T--TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh----c-C--CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEE
Confidence 467888876 1246888999999887654444211 0 0 111222223344555433 44568888999999
Q ss_pred EEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEee--CCeeEEEecCCCEEEe
Q 045739 113 FSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG--GSTSAAVTEKGKLYMW 167 (189)
Q Consensus 113 y~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~w 167 (189)
|-+-..+...++....-.. .++.-.++.|+.+... ..+.+++|++|...-.
T Consensus 140 ~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 140 ARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKI 192 (276)
T ss_dssp EEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEE
T ss_pred EEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEe
Confidence 9997776666543221111 1222234556666544 3467778888876543
No 48
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=38.10 E-value=26 Score=26.23 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=11.5
Q ss_pred ceeEEEeCCCcEEEecC
Q 045739 49 FFTMVLTEEGQLWNWGA 65 (189)
Q Consensus 49 ~h~~~lt~~g~v~~~G~ 65 (189)
.|+++. .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 455555 6789999994
No 49
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=37.82 E-value=1.4e+02 Score=22.95 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=71.3
Q ss_pred EEEcCcceeEEEeCCCcEEEecCC--CCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEEEecC
Q 045739 43 AVSCGGFFTMVLTEEGQLWNWGAN--SNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 43 ~i~~G~~h~~~lt~~g~v~~~G~n--~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~~G~~ 118 (189)
.+..+..+.+++|++|++|.+-.. .--..|...... ..+....+.+|+.+..- ..+.++++++|.+.-.-..
T Consensus 152 ~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 152 VLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 344577889999999999998876 444444433221 12334455677776553 3467788999987655444
Q ss_pred CCCCCCCCCCCCccccEEeccccCccEEEE--EeeCCeeEEEecCCCEEEe--------cCCCCCcccC
Q 045739 119 GHGQLGHSFTQNQKVPMVIEALADEFVTHI--ACGGSTSAAVTEKGKLYMW--------GNAKDSQLGV 177 (189)
Q Consensus 119 ~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~w--------G~n~~gqlg~ 177 (189)
++.....+..-... .++..-. ..++.+ ..+....+++|++|.+.-+ |++..|--++
T Consensus 228 e~~~~~R~~~G~~~--~~l~~~~-d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i 293 (327)
T 3uc1_A 228 EYPVQGRGGKGVLT--VMYDRRR-GRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLM 293 (327)
T ss_dssp GSCBCCTTSCCEES--SCCCTTT-CSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECT
T ss_pred HccccCcCCCcEEE--EEecCCC-CeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeE
Confidence 43322211100000 0111101 123333 2355788889999998765 6666665443
No 50
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=37.12 E-value=1.2e+02 Score=23.13 Aligned_cols=72 Identities=15% Similarity=-0.018 Sum_probs=42.4
Q ss_pred EEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeC-----CeeEEEecCCCEEEe
Q 045739 95 QIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGG-----STSAAVTEKGKLYMW 167 (189)
Q Consensus 95 ~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~-----~~~~~lt~~g~vy~w 167 (189)
.++.+..+.+++|+.|++|-+--.+....+....- .+....++...++.|..+..-. .+.+++|++|.+.-.
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 34556778889999999999877765555422111 1111112222445677665443 357788888876643
No 51
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=36.91 E-value=2.1e+02 Score=24.84 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=66.6
Q ss_pred EEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEEEecCC
Q 045739 42 AAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFSWGYGG 119 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~~G~~~ 119 (189)
...+....+.+++|+.|++|..--...-.. ..........++...+++|..+-.. ..+.++.|.+|.+.-.-..+
T Consensus 508 ~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~---~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~ 584 (716)
T 1zvu_A 508 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 584 (716)
T ss_dssp EECCCSSSCEEEEETTSEEEEECTTTSCCC---C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EEEecCCCEEEEEecCCcEEEEEeeecccc---cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH
Confidence 344556777888999999998765543221 1112222222334456788888664 34567778889887665443
Q ss_pred CCCCCCCCCCCccccEEeccccCccEEE--EE-eeCCeeEEEecCCCEEEecCCCC
Q 045739 120 HGQLGHSFTQNQKVPMVIEALADEFVTH--IA-CGGSTSAAVTEKGKLYMWGNAKD 172 (189)
Q Consensus 120 ~gq~g~~~~~~~~~~~~~~~~~~~~i~~--v~-~g~~~~~~lt~~g~vy~wG~n~~ 172 (189)
+...- ..-.....++ .+..+.. .. .+..+.+++|++|.+.-+-.++-
T Consensus 585 ~~~~~----~~g~~ai~L~--~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v 634 (716)
T 1zvu_A 585 LVARN----RAGKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 634 (716)
T ss_dssp GCCCS----TTCEECBCCC--TTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTS
T ss_pred hcccC----ccceEEEeeC--CCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHC
Confidence 32110 0000011111 1122222 22 35678888999999887766553
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=30.21 E-value=1.7e+02 Score=21.81 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred cccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcc-eeeeCCCCCCcEEEEEcCC---------ceE
Q 045739 34 VKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWK-PKLLPNLVDVRIIQIANGG---------YHS 103 (189)
Q Consensus 34 ~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~-~~~~~~~~~~~i~~v~~g~---------~~t 103 (189)
+......|..++......+.-..+|.|+.|-...... ..... ...+. .....|..++... ...
T Consensus 12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEE
Confidence 3344568888888887777778899999997543210 00011 11111 2234566665543 334
Q ss_pred EEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecccc----CccEEEEEee------CCe-eEEEecCCCEEEecCCC
Q 045739 104 LALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALA----DEFVTHIACG------GST-SAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 104 ~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~----~~~i~~v~~g------~~~-~~~lt~~g~vy~wG~n~ 171 (189)
+....+|.|++|-...... ........+.... ...|..+... ..+ .+.-+.+|.|+.|=...
T Consensus 85 ~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred EEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 4456789999985432111 0000011222221 2446666554 334 44446789999996544
No 53
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=30.20 E-value=1.5e+02 Score=21.11 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=7.5
Q ss_pred EEEEeCCCCEEEE
Q 045739 103 SLALTDDGKVFSW 115 (189)
Q Consensus 103 t~~l~~~g~vy~~ 115 (189)
.++++.+|++|+.
T Consensus 255 ~i~~~~~g~l~vs 267 (286)
T 1q7f_A 255 DVALMDDGSVVLA 267 (286)
T ss_dssp EEEEETTTEEEEE
T ss_pred eEEECCCCcEEEE
Confidence 4555566666655
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=29.82 E-value=1.5e+02 Score=21.05 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEc---CCceEEEEeCCCCEE
Q 045739 37 LPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIAN---GGYHSLALTDDGKVF 113 (189)
Q Consensus 37 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~---g~~~t~~l~~~g~vy 113 (189)
....|..++.-....+.-..+|.|..|-. ++ +..........+..+.. .....+....+|.|+
T Consensus 103 ~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 103 HQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS-----------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEET---TE-----------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc-----------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 34678888887777777788999999951 10 01111112234444443 455666678889999
Q ss_pred EEe
Q 045739 114 SWG 116 (189)
Q Consensus 114 ~~G 116 (189)
.|-
T Consensus 169 i~d 171 (313)
T 3odt_A 169 LWQ 171 (313)
T ss_dssp EEE
T ss_pred EEe
Confidence 984
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=29.43 E-value=2e+02 Score=22.23 Aligned_cols=110 Identities=6% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCEEEEEcCcc--eeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEe
Q 045739 39 VPVAAVSCGGF--FTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWG 116 (189)
Q Consensus 39 ~~i~~i~~G~~--h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G 116 (189)
..|..++.... ..+.-..+|.|+.|-.... + ....+. .....|..++....+.+.-..||.|.+|-
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWD 378 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence 34555555432 4444556777777753321 1 011111 12346777877777888888999999995
Q ss_pred cCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEecCCCC
Q 045739 117 YGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKD 172 (189)
Q Consensus 117 ~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG~n~~ 172 (189)
.....+ ...........+..+..... .++...+|.|+.|=..+.
T Consensus 379 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 379 ANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp TTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTTC
T ss_pred CCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCCC
Confidence 543211 11111111122444444333 334444788888876553
No 56
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=29.35 E-value=1.7e+02 Score=21.40 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.2
Q ss_pred eeEEEeCCCcEEEecCC
Q 045739 50 FTMVLTEEGQLWNWGAN 66 (189)
Q Consensus 50 h~~~lt~~g~v~~~G~n 66 (189)
+.++.+.+|++|..+..
T Consensus 48 ~~~~~~~~g~l~~~~~~ 64 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVF 64 (333)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred cCcEECCCCCEEEEECC
Confidence 56677788888876643
No 57
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=27.27 E-value=3.4e+02 Score=24.33 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=53.1
Q ss_pred CCCEEEEEcCcce--eEEEeCCCcEEEecCCCCCccCCCCCCCCcceeee---CCCCCCcEEEEEcCCceEEEEeCCCCE
Q 045739 38 PVPVAAVSCGGFF--TMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLL---PNLVDVRIIQIANGGYHSLALTDDGKV 112 (189)
Q Consensus 38 ~~~i~~i~~G~~h--~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~---~~~~~~~i~~v~~g~~~t~~l~~~g~v 112 (189)
...|..++...+. .+.-..||.|+.|-......+. ...+... .......|..++...+...+++.+|.|
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v 1200 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYL 1200 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSSE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCeE
Confidence 3467777665443 3334567888888644321111 0101000 011223455666555544445556888
Q ss_pred EEEecCCCCCCCCCCCCCccccEEeccccCccEEE--EEeeCCeeEEEecCCCEEEecC
Q 045739 113 FSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTH--IACGGSTSAAVTEKGKLYMWGN 169 (189)
Q Consensus 113 y~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~--v~~g~~~~~~lt~~g~vy~wG~ 169 (189)
..|-......+..- . .....|.. ++......+...++|.|+.|--
T Consensus 1201 ~vwd~~~g~~~~~~-----------~-~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTF-----------Y-TNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEBCSSSCBCCCCC-----------C-CSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEECCCCceeeee-----------e-ccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 88854332111100 0 00111222 3333345566677889998854
No 58
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=26.90 E-value=2e+02 Score=21.55 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=10.5
Q ss_pred CCeeEEEecCCCEEEe
Q 045739 152 GSTSAAVTEKGKLYMW 167 (189)
Q Consensus 152 ~~~~~~lt~~g~vy~w 167 (189)
....++.+.+|.||++
T Consensus 359 ~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 359 DGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCEEEEE
Confidence 4555666677777765
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=25.51 E-value=1.9e+02 Score=20.87 Aligned_cols=121 Identities=11% Similarity=-0.000 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC---ceEEEEeCCCCEE
Q 045739 37 LPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG---YHSLALTDDGKVF 113 (189)
Q Consensus 37 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~---~~t~~l~~~g~vy 113 (189)
....|..++......++-+.++.|+.|-....+.. ............+..++... ...++-..+|.|.
T Consensus 149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~ 219 (342)
T 1yfq_A 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence 34578888888888777788999999975441110 01111112223466666543 4455557888888
Q ss_pred EEecCCCCCCCCCCCCCccccEEecccc--------CccEEEEEeeC--CeeEEEecCCCEEEecCCC
Q 045739 114 SWGYGGHGQLGHSFTQNQKVPMVIEALA--------DEFVTHIACGG--STSAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 114 ~~G~~~~gq~g~~~~~~~~~~~~~~~~~--------~~~i~~v~~g~--~~~~~lt~~g~vy~wG~n~ 171 (189)
+|-....+.- ........+.... ...|..++... ...+.-+.+|.|+.|=..+
T Consensus 220 i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 220 VEFFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 8855432100 0000001111100 11466665433 3344456688888887654
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=24.92 E-value=2.2e+02 Score=21.25 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCCEEEEEcCcc-eeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcC--CceEEEEeCCCCEEE
Q 045739 38 PVPVAAVSCGGF-FTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANG--GYHSLALTDDGKVFS 114 (189)
Q Consensus 38 ~~~i~~i~~G~~-h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~t~~l~~~g~vy~ 114 (189)
...|..++.... ..++...+|.|+.|-..... +..........+..++.. ....++-..+|.|++
T Consensus 289 ~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 289 SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CccEEEEEECCCCEEEEEeCCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 345666665544 55555678888888643211 111111123356666554 344555577888988
Q ss_pred EecC
Q 045739 115 WGYG 118 (189)
Q Consensus 115 ~G~~ 118 (189)
|-..
T Consensus 357 ~~~~ 360 (425)
T 1r5m_A 357 YDLK 360 (425)
T ss_dssp EECH
T ss_pred EECC
Confidence 8543
No 61
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=24.64 E-value=2e+02 Score=20.86 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=9.0
Q ss_pred ceeEEEeCCCc-EEEec
Q 045739 49 FFTMVLTEEGQ-LWNWG 64 (189)
Q Consensus 49 ~h~~~lt~~g~-v~~~G 64 (189)
-+.++++.+|+ +|+..
T Consensus 91 ~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGN 107 (353)
T ss_dssp CCSEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEe
Confidence 45566666665 55443
No 62
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=23.28 E-value=41 Score=19.68 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.9
Q ss_pred EEEEcCcceeEEEeCCCcEE
Q 045739 42 AAVSCGGFFTMVLTEEGQLW 61 (189)
Q Consensus 42 ~~i~~G~~h~~~lt~~g~v~ 61 (189)
..|.+|.+|++.-..+|.|.
T Consensus 49 ~nVg~GkD~TLfAl~~G~V~ 68 (69)
T 2ftc_O 49 AHVGVGKNKCLYALEEGIVR 68 (69)
T ss_pred CCeeecCCCcEEEccceEEe
Confidence 46889999999999998874
No 63
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.08 E-value=2.2e+02 Score=20.79 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=39.0
Q ss_pred EcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEee--CCeeEEEecCCCEEE
Q 045739 97 ANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG--GSTSAAVTEKGKLYM 166 (189)
Q Consensus 97 ~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~ 166 (189)
+....+.+++|++|++|-+--.+.... .+ .-......++...++.|+.+... ..+.+++|++|.+.-
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~elp~~-r~--~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr 109 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITLPSA-RG--QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 109 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGSCCS-SS--CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCCCc-CC--CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 445667889999999999876654322 10 11111012233345667777663 345677888887653
No 64
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=22.57 E-value=2.2e+02 Score=20.60 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcCcc-----eeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEcCC--ceEEEEeC
Q 045739 36 ALPVPVAAVSCGGF-----FTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGG--YHSLALTD 108 (189)
Q Consensus 36 ~~~~~i~~i~~G~~-----h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~g~--~~t~~l~~ 108 (189)
.....|..++.... ..+.-..+|.|..|-....++. ....+. .....|..++... ...+....
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEec-cccCCEEEEEECcCCCEEEEEcC
Confidence 34468889988875 3444467899999965432211 001111 1234566665543 34555678
Q ss_pred CCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEe--eCCe--eEEEecCCCEEEecCCC
Q 045739 109 DGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIAC--GGST--SAAVTEKGKLYMWGNAK 171 (189)
Q Consensus 109 ~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~--g~~~--~~~lt~~g~vy~wG~n~ 171 (189)
+|.|.+|-.... + ...+.. ....|..+.. ..+. .+.-..+|.|+.|=...
T Consensus 107 dg~v~iwd~~~~-~-----------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 107 DKTAKMWDLSSN-Q-----------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp TSEEEEEETTTT-E-----------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred CCcEEEEEcCCC-C-----------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 888999954421 1 111111 1234666654 3332 33335578888886543
No 65
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.42 E-value=3.8e+02 Score=23.23 Aligned_cols=68 Identities=7% Similarity=0.071 Sum_probs=39.0
Q ss_pred EcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEee--CCeeEEEecCCCEEEe
Q 045739 97 ANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACG--GSTSAAVTEKGKLYMW 167 (189)
Q Consensus 97 ~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~w 167 (189)
+....+.+++|+.|++|..--.+.... .+ .-......++...++.|..+... ..+.++.|++|.+.-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~-~~--~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~ 580 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSA-RG--QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 580 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCC-C-----CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEE
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccc-cc--cCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEe
Confidence 344566678899999998876665442 11 11111111222345677777665 3456777888877643
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=21.62 E-value=2.2e+02 Score=20.12 Aligned_cols=115 Identities=8% Similarity=-0.001 Sum_probs=57.0
Q ss_pred ccccCCCCEEEEEcCc-ceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCCCCCCcEEEEEc--CCceEEEEeCC
Q 045739 33 KVKALPVPVAAVSCGG-FFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIAN--GGYHSLALTDD 109 (189)
Q Consensus 33 ~~~~~~~~i~~i~~G~-~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~i~~v~~--g~~~t~~l~~~ 109 (189)
.+......|..++.-. ...+.-..+|.|..|-..... ....+.. ....|..++. .....+.-..+
T Consensus 13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-----------LGTVVYT-GQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE-----------EEEEEEE-CSSCEEEEEEETTTTEEEEEETT
T ss_pred HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE-----------EEEEeec-CCccEEEEEECCCCCEEEEecCC
Confidence 3444456777777622 234445678999999643210 1111111 1233444433 34455555677
Q ss_pred CCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEecCCCEEEec
Q 045739 110 GKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWG 168 (189)
Q Consensus 110 g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt~~g~vy~wG 168 (189)
|.|..|-...... ... ...+. .....|..+.......+.-+.+|.|+.|=
T Consensus 81 g~i~~~~~~~~~~-------~~~-~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 81 TMINGVPLFATSG-------EDP-LYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp SCEEEEETTCCTT-------SCC--CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CeEEEEEeeecCC-------CCc-ccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 8887775433110 000 00111 11234666666566666666777777774
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=21.23 E-value=2.8e+02 Score=21.17 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=35.1
Q ss_pred CcceeEEEeCCCcEEEecCCCCCccCCCCCCCCcceeeeCC-CCCCcEEEEEcCC--ceEEEEeCCCCEEEEecC
Q 045739 47 GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPN-LVDVRIIQIANGG--YHSLALTDDGKVFSWGYG 118 (189)
Q Consensus 47 G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~-~~~~~i~~v~~g~--~~t~~l~~~g~vy~~G~~ 118 (189)
+..+.+|+--++.||.|-... |++ ...+.. .....|..|+... .+.+.-+.||.|..|-..
T Consensus 114 S~~n~lAvgld~tV~lWd~~t-g~~----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASS-GDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTT-CCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEeCCEEEEEECCC-CCE----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 345678888899999996432 111 011111 1223477776543 344445788899888544
No 68
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=21.22 E-value=53 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=13.4
Q ss_pred eEEEecCCCEEEecCCCC
Q 045739 155 SAAVTEKGKLYMWGNAKD 172 (189)
Q Consensus 155 ~~~lt~~g~vy~wG~n~~ 172 (189)
.++++++|+||. |.|-.
T Consensus 31 Aal~~~dG~i~~-G~NvE 47 (130)
T 2z3g_A 31 SAALSSDGRIFT-GVNVY 47 (130)
T ss_dssp EEEEETTSCEEE-EECCC
T ss_pred EEEEecCCeEEE-Eeccc
Confidence 355678999996 99876
Done!