Query 045745
Match_columns 351
No_of_seqs 363 out of 1727
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.1E-17 3.7E-22 133.2 7.1 77 169-245 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 7.4E-17 2.5E-21 123.3 4.3 71 176-246 2-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 4.6E-15 1.6E-19 106.3 4.9 51 194-244 3-54 (55)
4 2ect_A Ring finger protein 126 99.5 7.7E-15 2.6E-19 112.6 4.6 56 193-248 12-67 (78)
5 2kiz_A E3 ubiquitin-protein li 99.5 9.7E-15 3.3E-19 109.5 5.0 53 194-246 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.5 1.5E-14 5.2E-19 109.9 5.0 54 194-247 13-66 (74)
7 2ecm_A Ring finger and CHY zin 99.4 9.2E-14 3.1E-18 99.3 4.5 50 195-244 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.4 8.6E-14 2.9E-18 108.4 3.4 51 196-246 15-77 (81)
9 3dpl_R Ring-box protein 1; ubi 99.4 1.9E-13 6.6E-18 112.2 4.5 50 195-244 36-100 (106)
10 1v87_A Deltex protein 2; ring- 99.4 2.4E-13 8.3E-18 111.5 4.7 52 195-246 24-95 (114)
11 2ea6_A Ring finger protein 4; 99.4 2.7E-13 9.1E-18 100.9 4.5 52 194-245 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 2.4E-13 8.3E-18 101.9 3.6 53 194-246 8-64 (71)
13 2xeu_A Ring finger protein 4; 99.3 4.7E-13 1.6E-17 98.1 3.5 51 196-246 3-57 (64)
14 2d8t_A Dactylidin, ring finger 99.3 6.3E-13 2.2E-17 100.4 3.8 50 194-246 13-62 (71)
15 1chc_A Equine herpes virus-1 r 99.3 1.2E-12 4.1E-17 97.5 4.3 50 195-246 4-53 (68)
16 2d8s_A Cellular modulator of i 99.3 1.2E-12 4.2E-17 102.1 4.0 52 195-247 14-72 (80)
17 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.2E-17 98.1 4.5 52 193-247 12-64 (72)
18 2ecn_A Ring finger protein 141 99.3 6E-13 2E-17 99.9 1.5 50 194-247 13-62 (70)
19 2ct2_A Tripartite motif protei 99.3 2.3E-12 7.8E-17 100.4 4.8 55 192-246 11-69 (88)
20 2ysl_A Tripartite motif-contai 99.2 5E-12 1.7E-16 95.3 4.6 51 193-246 17-70 (73)
21 2csy_A Zinc finger protein 183 99.2 4.9E-12 1.7E-16 97.7 4.7 48 194-244 13-60 (81)
22 2yur_A Retinoblastoma-binding 99.2 6E-12 2.1E-16 95.9 4.8 51 193-246 12-65 (74)
23 2ecy_A TNF receptor-associated 99.2 5.3E-12 1.8E-16 93.8 4.3 50 194-246 13-63 (66)
24 4ayc_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 107.9 3.7 50 195-247 52-101 (138)
25 4a0k_B E3 ubiquitin-protein li 99.2 1.4E-12 4.9E-17 108.8 0.3 50 195-244 47-111 (117)
26 1t1h_A Gspef-atpub14, armadill 99.2 1.1E-11 3.6E-16 94.9 4.6 51 193-246 5-56 (78)
27 3lrq_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 103.8 -0.1 50 195-247 21-72 (100)
28 2egp_A Tripartite motif-contai 99.2 7E-12 2.4E-16 95.8 2.2 51 193-246 9-66 (79)
29 2ecw_A Tripartite motif-contai 99.1 2.1E-11 7.2E-16 93.9 4.2 51 193-246 16-72 (85)
30 2ysj_A Tripartite motif-contai 99.1 2.9E-11 9.9E-16 88.8 4.7 44 193-239 17-63 (63)
31 2ecv_A Tripartite motif-contai 99.1 2.2E-11 7.6E-16 93.7 4.3 51 193-246 16-72 (85)
32 2ct0_A Non-SMC element 1 homol 99.1 2.8E-11 9.5E-16 93.1 4.4 49 196-246 15-65 (74)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 2.2E-11 7.6E-16 101.2 3.7 53 195-247 6-62 (133)
34 2ckl_A Polycomb group ring fin 99.1 1.7E-11 5.9E-16 99.8 2.7 51 193-246 12-63 (108)
35 3ztg_A E3 ubiquitin-protein li 99.1 5.1E-11 1.7E-15 93.9 4.6 49 193-244 10-61 (92)
36 2y43_A E3 ubiquitin-protein li 99.1 4E-11 1.4E-15 96.0 4.0 48 196-246 22-70 (99)
37 2ecj_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 86.0 3.5 44 193-239 12-58 (58)
38 4ap4_A E3 ubiquitin ligase RNF 99.1 5.3E-11 1.8E-15 98.9 4.3 53 195-247 71-127 (133)
39 2ckl_B Ubiquitin ligase protei 99.1 3.5E-11 1.2E-15 105.1 2.4 51 193-246 51-103 (165)
40 3fl2_A E3 ubiquitin-protein li 99.1 6.2E-11 2.1E-15 98.7 3.8 48 195-245 51-99 (124)
41 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.3E-15 86.0 4.2 51 196-246 3-56 (65)
42 1z6u_A NP95-like ring finger p 99.0 4.5E-11 1.5E-15 103.6 1.1 49 195-246 77-126 (150)
43 1jm7_A BRCA1, breast cancer ty 99.0 1.2E-10 4.1E-15 94.7 3.3 49 196-247 21-72 (112)
44 3hct_A TNF receptor-associated 99.0 1.6E-10 5.4E-15 95.6 3.7 52 193-247 15-67 (118)
45 3l11_A E3 ubiquitin-protein li 99.0 6.1E-11 2.1E-15 97.5 0.8 49 195-246 14-63 (115)
46 2kr4_A Ubiquitin conjugation f 99.0 3.9E-10 1.3E-14 88.5 4.7 52 193-247 11-62 (85)
47 1rmd_A RAG1; V(D)J recombinati 98.9 3.7E-10 1.3E-14 92.9 3.7 49 196-247 23-72 (116)
48 2kre_A Ubiquitin conjugation f 98.9 6.1E-10 2.1E-14 90.2 4.6 52 193-247 26-77 (100)
49 2y1n_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 110.9 4.2 49 196-247 332-381 (389)
50 1bor_A Transcription factor PM 98.9 3E-10 1E-14 82.0 2.0 46 195-246 5-50 (56)
51 1wgm_A Ubiquitin conjugation f 98.9 5.8E-10 2E-14 90.0 3.9 52 194-248 20-72 (98)
52 3knv_A TNF receptor-associated 98.9 1.9E-10 6.5E-15 98.6 0.3 51 192-245 27-78 (141)
53 1e4u_A Transcriptional repress 98.9 1E-09 3.4E-14 85.0 4.1 54 193-247 8-64 (78)
54 2vje_A E3 ubiquitin-protein li 98.9 8.5E-10 2.9E-14 82.0 3.4 48 195-245 7-57 (64)
55 2vje_B MDM4 protein; proto-onc 98.8 2E-09 6.9E-14 79.7 3.4 48 195-245 6-56 (63)
56 1jm7_B BARD1, BRCA1-associated 98.8 1.3E-09 4.6E-14 89.9 2.7 46 196-246 22-68 (117)
57 4ic3_A E3 ubiquitin-protein li 98.8 4.3E-10 1.5E-14 85.8 -1.4 44 196-246 24-68 (74)
58 2yu4_A E3 SUMO-protein ligase 98.7 6.9E-09 2.4E-13 82.7 3.5 51 194-247 5-65 (94)
59 3hcs_A TNF receptor-associated 98.7 6.7E-09 2.3E-13 90.8 3.7 53 192-247 14-67 (170)
60 2c2l_A CHIP, carboxy terminus 98.7 9.1E-09 3.1E-13 95.5 4.7 51 194-247 206-257 (281)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.6 1.8E-08 6.3E-13 74.1 3.6 47 195-244 5-58 (60)
62 3k1l_B Fancl; UBC, ring, RWD, 98.6 1E-08 3.5E-13 99.4 2.3 52 195-246 307-374 (381)
63 2f42_A STIP1 homology and U-bo 98.6 3.9E-08 1.3E-12 87.6 4.4 52 194-248 104-156 (179)
64 2ecg_A Baculoviral IAP repeat- 98.5 2.1E-08 7.1E-13 76.4 2.1 44 196-246 25-69 (75)
65 2ea5_A Cell growth regulator w 98.5 6.3E-08 2.1E-12 72.8 3.8 45 195-246 14-59 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 5.4E-08 1.8E-12 75.2 1.5 44 196-246 18-62 (79)
67 1wim_A KIAA0161 protein; ring 98.4 8.1E-08 2.8E-12 76.1 2.2 52 195-246 4-67 (94)
68 2bay_A PRE-mRNA splicing facto 98.4 1.2E-07 4.2E-12 69.8 2.9 48 197-247 4-52 (61)
69 3t6p_A Baculoviral IAP repeat- 98.3 2.5E-07 8.6E-12 90.3 2.9 45 195-246 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 4E-07 1.4E-11 85.5 3.1 52 194-247 179-234 (267)
71 3vk6_A E3 ubiquitin-protein li 97.9 7.4E-06 2.5E-10 65.9 3.2 49 198-248 3-52 (101)
72 3nw0_A Non-structural maintena 97.8 6.9E-06 2.4E-10 76.1 3.2 48 196-246 180-230 (238)
73 2ko5_A Ring finger protein Z; 94.6 0.01 3.5E-07 47.1 1.2 50 195-249 27-77 (99)
74 2lri_C Autoimmune regulator; Z 93.9 0.048 1.7E-06 40.4 3.7 44 195-242 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.9 0.049 1.7E-06 42.7 2.5 33 195-229 2-36 (101)
76 2kdx_A HYPA, hydrogenase/ureas 90.5 0.19 6.5E-06 41.1 3.5 33 10-45 72-105 (119)
77 2l5u_A Chromodomain-helicase-D 88.4 0.23 7.7E-06 35.9 2.2 44 194-241 9-57 (61)
78 1mm2_A MI2-beta; PHD, zinc fin 87.0 0.28 9.4E-06 35.5 2.0 45 195-243 8-57 (61)
79 1we9_A PHD finger family prote 86.9 0.16 5.4E-06 36.8 0.6 47 195-241 5-57 (64)
80 1wil_A KIAA1045 protein; ring 86.9 0.42 1.4E-05 37.1 3.0 32 194-229 13-47 (89)
81 3m62_A Ubiquitin conjugation f 85.3 0.53 1.8E-05 51.2 3.9 55 194-251 889-944 (968)
82 3o36_A Transcription intermedi 83.9 0.44 1.5E-05 41.6 2.1 46 195-244 3-53 (184)
83 3lqh_A Histone-lysine N-methyl 82.0 0.75 2.6E-05 40.6 2.9 49 197-245 3-66 (183)
84 3u5n_A E3 ubiquitin-protein li 81.7 0.5 1.7E-05 42.1 1.6 45 195-243 6-55 (207)
85 2yql_A PHD finger protein 21A; 81.1 0.29 9.8E-06 34.6 -0.2 43 194-240 7-54 (56)
86 2k16_A Transcription initiatio 81.1 0.45 1.5E-05 35.4 0.9 49 195-244 17-70 (75)
87 1f62_A Transcription factor WS 80.2 0.83 2.8E-05 31.4 2.0 43 198-241 2-49 (51)
88 1xwh_A Autoimmune regulator; P 79.7 0.35 1.2E-05 35.4 -0.1 43 195-241 7-54 (66)
89 2ysm_A Myeloid/lymphoid or mix 78.9 0.97 3.3E-05 36.1 2.3 46 195-240 6-55 (111)
90 1wg2_A Zinc finger (AN1-like) 78.6 0.93 3.2E-05 33.4 1.9 33 7-45 11-43 (64)
91 2puy_A PHD finger protein 21A; 78.0 0.61 2.1E-05 33.3 0.7 43 195-241 4-51 (60)
92 3v43_A Histone acetyltransfera 77.4 1.1 3.7E-05 36.1 2.2 44 198-241 63-111 (112)
93 3a43_A HYPD, hydrogenase nicke 76.8 1.9 6.4E-05 36.2 3.6 37 9-45 68-122 (139)
94 3h0g_L DNA-directed RNA polyme 76.7 1.6 5.5E-05 32.0 2.7 34 9-44 19-52 (63)
95 1wfp_A Zinc finger (AN1-like) 74.3 1.7 5.7E-05 32.9 2.3 35 4-44 18-52 (74)
96 1fp0_A KAP-1 corepressor; PHD 74.2 2.1 7.2E-05 33.3 3.0 45 194-242 23-72 (88)
97 2yt5_A Metal-response element- 73.3 1.6 5.5E-05 31.5 2.0 49 194-242 4-61 (66)
98 2ct7_A Ring finger protein 31; 71.3 2.7 9.3E-05 32.1 3.0 35 9-44 23-57 (86)
99 1wep_A PHF8; structural genomi 70.8 2.7 9.1E-05 31.6 2.8 46 197-243 13-64 (79)
100 2ro1_A Transcription intermedi 69.9 1.6 5.4E-05 38.5 1.5 43 196-242 2-49 (189)
101 2kgg_A Histone demethylase jar 69.7 2.2 7.5E-05 29.5 1.9 43 198-240 4-52 (52)
102 3v43_A Histone acetyltransfera 67.5 3.9 0.00013 32.7 3.3 34 195-228 4-43 (112)
103 4ayb_P DNA-directed RNA polyme 66.8 4.1 0.00014 28.0 2.7 38 10-47 2-40 (48)
104 1wev_A Riken cDNA 1110020M19; 65.8 1.3 4.5E-05 34.2 0.1 48 196-243 16-73 (88)
105 2ku3_A Bromodomain-containing 65.7 2.2 7.4E-05 31.8 1.3 48 194-241 14-65 (71)
106 1twf_L ABC10-alpha, DNA-direct 64.0 4.6 0.00016 30.1 2.8 31 9-41 26-56 (70)
107 2vpb_A Hpygo1, pygopus homolog 63.6 3.9 0.00013 29.8 2.3 34 195-228 7-42 (65)
108 1iml_A CRIP, cysteine rich int 62.0 4 0.00014 29.7 2.2 39 198-246 2-40 (76)
109 2con_A RUH-035 protein, NIN on 61.8 5.8 0.0002 30.3 3.1 32 11-46 15-46 (79)
110 2cs3_A Protein C14ORF4, MY039 61.8 3.9 0.00013 31.5 2.1 36 196-232 15-52 (93)
111 2cu8_A Cysteine-rich protein 2 61.8 5.3 0.00018 29.0 2.8 40 197-246 10-49 (76)
112 2lv9_A Histone-lysine N-methyl 61.5 3.3 0.00011 32.5 1.7 44 197-242 29-76 (98)
113 2e6r_A Jumonji/ARID domain-con 60.9 1.7 5.8E-05 33.9 -0.1 46 195-241 15-65 (92)
114 2lbm_A Transcriptional regulat 60.6 9 0.00031 32.3 4.4 45 194-242 61-117 (142)
115 2dj7_A Actin-binding LIM prote 60.2 8.3 0.00029 28.6 3.7 39 196-244 15-53 (80)
116 1wfh_A Zinc finger (AN1-like) 59.2 5 0.00017 29.4 2.2 30 9-44 13-42 (64)
117 2l43_A N-teminal domain from h 58.6 2.2 7.4E-05 33.0 0.2 49 194-242 23-75 (88)
118 2e6s_A E3 ubiquitin-protein li 58.5 2.9 9.9E-05 31.6 0.9 44 197-241 27-76 (77)
119 2xb1_A Pygopus homolog 2, B-ce 57.8 4.9 0.00017 32.0 2.1 47 197-243 4-62 (105)
120 3asl_A E3 ubiquitin-protein li 57.7 2.6 9E-05 31.1 0.5 43 198-241 20-68 (70)
121 2ri7_A Nucleosome-remodeling f 57.4 2 7E-05 36.8 -0.2 46 195-241 7-58 (174)
122 2co8_A NEDD9 interacting prote 57.1 9.7 0.00033 28.2 3.6 41 196-246 15-55 (82)
123 3ql9_A Transcriptional regulat 57.0 10 0.00035 31.4 4.1 45 193-241 54-110 (129)
124 3shb_A E3 ubiquitin-protein li 56.2 2.6 9E-05 31.9 0.3 25 217-241 47-76 (77)
125 1x64_A Alpha-actinin-2 associa 53.5 18 0.00062 27.0 4.7 41 195-246 24-64 (89)
126 2kwj_A Zinc finger protein DPF 53.4 5 0.00017 32.2 1.5 34 197-230 2-42 (114)
127 2akl_A PHNA-like protein PA012 53.0 5.4 0.00019 33.3 1.7 16 29-44 26-41 (138)
128 4gne_A Histone-lysine N-methyl 52.8 9.1 0.00031 30.7 3.0 47 194-246 13-66 (107)
129 1x4l_A Skeletal muscle LIM-pro 52.4 14 0.00048 26.3 3.8 40 197-245 6-47 (72)
130 1weu_A Inhibitor of growth fam 52.2 13 0.00043 29.0 3.6 43 196-243 36-86 (91)
131 1x63_A Skeletal muscle LIM-pro 51.3 14 0.00046 27.0 3.6 41 197-246 16-56 (82)
132 1zbd_B Rabphilin-3A; G protein 49.7 8.3 0.00028 32.1 2.4 47 195-241 54-106 (134)
133 3i2d_A E3 SUMO-protein ligase 48.8 11 0.00038 36.7 3.4 48 197-247 250-302 (371)
134 4fo9_A E3 SUMO-protein ligase 48.6 11 0.00037 36.6 3.3 48 197-247 216-268 (360)
135 1x4k_A Skeletal muscle LIM-pro 48.5 15 0.00051 26.0 3.3 41 197-246 6-46 (72)
136 1wyh_A SLIM 2, skeletal muscle 48.0 12 0.00042 26.5 2.8 41 197-246 6-46 (72)
137 1g47_A Pinch protein; LIM doma 47.8 25 0.00086 25.1 4.6 42 196-246 11-52 (77)
138 1x61_A Thyroid receptor intera 47.7 16 0.00055 25.9 3.4 39 197-244 6-44 (72)
139 2zet_C Melanophilin; complex, 47.4 11 0.00037 32.2 2.7 46 195-241 67-116 (153)
140 3ask_A E3 ubiquitin-protein li 47.0 6.3 0.00022 35.8 1.3 44 197-241 175-224 (226)
141 1x68_A FHL5 protein; four-and- 46.7 17 0.00058 26.2 3.5 41 197-245 6-47 (76)
142 1x4w_A Hypothetical protein FL 45.6 8.5 0.00029 28.4 1.6 32 10-44 14-45 (67)
143 3o70_A PHD finger protein 13; 45.3 5.3 0.00018 29.3 0.4 45 195-241 18-66 (68)
144 2cor_A Pinch protein; LIM doma 44.4 20 0.00069 26.2 3.6 40 196-246 15-54 (79)
145 1wee_A PHD finger family prote 42.9 13 0.00045 27.1 2.3 45 196-241 16-65 (72)
146 1weo_A Cellulose synthase, cat 42.7 35 0.0012 26.6 4.7 49 197-245 17-70 (93)
147 2dar_A PDZ and LIM domain prot 42.3 20 0.00068 26.8 3.3 39 196-245 25-63 (90)
148 1y02_A CARP2, FYVE-ring finger 42.0 4 0.00014 33.5 -0.8 45 197-241 20-65 (120)
149 1x62_A C-terminal LIM domain p 41.4 24 0.00084 25.6 3.6 38 196-244 15-52 (79)
150 2l3k_A Rhombotin-2, linker, LI 41.2 15 0.0005 29.4 2.6 38 198-244 10-47 (123)
151 3f6q_B LIM and senescent cell 40.3 25 0.00086 24.5 3.5 42 196-246 11-52 (72)
152 1a7i_A QCRP2 (LIM1); LIM domai 40.2 11 0.00038 27.6 1.5 40 197-246 8-47 (81)
153 1wem_A Death associated transc 39.6 6.9 0.00023 29.0 0.3 43 197-241 17-69 (76)
154 1wfl_A Zinc finger protein 216 39.4 13 0.00046 27.9 1.8 29 10-44 24-52 (74)
155 1z2q_A LM5-1; membrane protein 38.8 22 0.00075 26.8 3.0 34 196-229 21-55 (84)
156 2d8y_A Eplin protein; LIM doma 38.5 27 0.00094 26.1 3.6 41 196-246 15-55 (91)
157 1x6a_A LIMK-2, LIM domain kina 37.8 18 0.00063 26.3 2.4 38 197-245 16-53 (81)
158 2k2d_A Ring finger and CHY zin 37.6 17 0.00057 27.5 2.2 34 11-45 37-70 (79)
159 1vfy_A Phosphatidylinositol-3- 37.6 23 0.00078 26.0 2.9 32 197-228 12-44 (73)
160 2ysm_A Myeloid/lymphoid or mix 37.4 4.8 0.00017 31.9 -1.0 43 198-241 56-103 (111)
161 2a20_A Regulating synaptic mem 37.0 4 0.00014 29.5 -1.3 50 192-241 5-59 (62)
162 1v6g_A Actin binding LIM prote 36.9 28 0.00094 25.3 3.3 39 197-246 16-54 (81)
163 1joc_A EEA1, early endosomal a 36.8 21 0.00071 29.1 2.8 33 197-229 70-103 (125)
164 3t7l_A Zinc finger FYVE domain 36.5 23 0.00077 27.2 2.8 34 197-230 21-55 (90)
165 1nyp_A Pinch protein; LIM doma 36.4 24 0.00082 24.5 2.8 38 197-245 6-43 (66)
166 2yw8_A RUN and FYVE domain-con 35.9 24 0.00081 26.5 2.8 33 197-229 20-53 (82)
167 2d8z_A Four and A half LIM dom 35.9 32 0.0011 24.1 3.4 38 197-245 6-43 (70)
168 1wfk_A Zinc finger, FYVE domai 35.5 26 0.00089 26.8 3.0 35 196-230 9-44 (88)
169 1dvp_A HRS, hepatocyte growth 35.5 20 0.00068 31.8 2.7 35 195-229 160-195 (220)
170 2d8x_A Protein pinch; LIM doma 35.4 36 0.0012 23.9 3.6 39 197-246 6-44 (70)
171 3a1b_A DNA (cytosine-5)-methyl 34.6 23 0.00078 30.5 2.8 43 195-241 78-133 (159)
172 1wff_A Riken cDNA 2810002D23 p 34.5 23 0.00079 27.3 2.5 30 10-44 24-53 (85)
173 1wen_A Inhibitor of growth fam 34.3 30 0.001 25.4 3.1 43 196-243 16-66 (71)
174 2b9d_A E7 protein; zinc finger 34.0 11 0.00036 26.4 0.5 26 13-38 10-49 (52)
175 2gmg_A Hypothetical protein PF 33.3 23 0.00078 28.4 2.4 32 10-43 66-97 (105)
176 2o35_A Hypothetical protein DU 33.1 14 0.00047 29.4 1.0 12 220-231 42-53 (105)
177 2l4z_A DNA endonuclease RBBP8, 33.0 25 0.00085 28.3 2.7 38 197-244 62-99 (123)
178 3fyb_A Protein of unknown func 33.0 14 0.00047 29.4 1.0 12 220-231 41-52 (104)
179 1x4u_A Zinc finger, FYVE domai 33.0 28 0.00096 26.1 2.8 32 197-228 15-47 (84)
180 2d8v_A Zinc finger FYVE domain 32.9 9.4 0.00032 28.1 0.1 27 10-36 7-34 (67)
181 1zfo_A LAsp-1; LIM domain, zin 32.5 15 0.00051 22.5 0.9 28 197-226 4-31 (31)
182 3zyq_A Hepatocyte growth facto 32.5 23 0.00079 31.6 2.6 35 195-229 163-198 (226)
183 2vnf_A ING 4, P29ING4, inhibit 30.4 9.3 0.00032 27.1 -0.3 41 196-241 10-58 (60)
184 2cuq_A Four and A half LIM dom 30.1 42 0.0014 24.1 3.3 38 197-245 16-53 (80)
185 2cup_A Skeletal muscle LIM-pro 29.7 45 0.0015 25.1 3.6 39 197-244 6-44 (101)
186 1wd2_A Ariadne-1 protein homol 29.4 19 0.00065 25.6 1.2 36 197-232 7-47 (60)
187 2egq_A FHL1 protein; LIM domai 29.3 44 0.0015 23.8 3.3 41 197-245 16-58 (77)
188 2ehe_A Four and A half LIM dom 29.0 38 0.0013 24.6 2.9 40 197-245 16-55 (82)
189 1pft_A TFIIB, PFTFIIBN; N-term 28.8 18 0.00063 24.3 1.0 33 11-44 5-38 (50)
190 1z60_A TFIIH basal transcripti 28.5 22 0.00076 25.4 1.4 42 197-239 16-58 (59)
191 1ryq_A DNA-directed RNA polyme 28.1 27 0.00091 25.9 1.8 20 12-38 12-31 (69)
192 2cur_A Skeletal muscle LIM-pro 27.8 38 0.0013 23.6 2.7 38 197-245 6-43 (69)
193 2kwj_A Zinc finger protein DPF 27.8 9.6 0.00033 30.5 -0.7 43 198-241 60-107 (114)
194 2iyb_E Testin, TESS, TES; LIM 27.6 44 0.0015 23.2 2.9 40 197-245 3-44 (65)
195 2dlo_A Thyroid receptor-intera 27.4 46 0.0016 24.0 3.1 38 197-245 16-53 (81)
196 2jne_A Hypothetical protein YF 27.1 30 0.001 27.4 2.0 29 13-44 34-62 (101)
197 2jvm_A Uncharacterized protein 26.8 19 0.00066 27.4 0.9 18 28-45 51-68 (80)
198 1wig_A KIAA1808 protein; LIM d 26.7 41 0.0014 24.1 2.7 37 197-244 6-42 (73)
199 2ewl_A Protein E7; HPV, oncopr 26.7 10 0.00035 26.9 -0.6 25 13-37 15-53 (56)
200 3mpx_A FYVE, rhogef and PH dom 26.3 14 0.00048 35.7 0.0 48 196-243 375-430 (434)
201 2pv0_B DNA (cytosine-5)-methyl 26.0 44 0.0015 32.7 3.5 44 195-242 92-148 (386)
202 1vd4_A Transcription initiatio 25.7 23 0.00079 24.1 1.1 36 9-44 12-53 (62)
203 2eps_A POZ-, at HOOK-, and zin 25.7 67 0.0023 20.7 3.5 33 9-41 10-52 (54)
204 1b8t_A Protein (CRP1); LIM dom 25.6 46 0.0016 28.5 3.3 41 196-246 115-155 (192)
205 2jvx_A NF-kappa-B essential mo 25.3 15 0.00052 22.4 0.0 14 234-247 4-17 (28)
206 1r79_A Diacylglycerol kinase, 25.2 61 0.0021 24.7 3.5 38 192-229 34-74 (84)
207 2ida_A Hypothetical protein; z 25.1 34 0.0012 27.1 2.1 16 9-24 73-88 (102)
208 2jz8_A Uncharacterized protein 24.0 21 0.00072 27.6 0.6 18 27-44 45-62 (87)
209 2xqn_T Testin, TESS; metal-bin 23.6 56 0.0019 25.7 3.2 45 197-245 31-75 (126)
210 2m0e_A Zinc finger and BTB dom 23.2 30 0.001 18.4 1.1 12 31-42 3-14 (29)
211 2lv2_A Insulinoma-associated p 23.2 41 0.0014 25.1 2.1 34 9-42 26-68 (85)
212 2yt9_A Zinc finger-containing 23.1 54 0.0018 23.5 2.8 35 8-42 4-47 (95)
213 1x3h_A Leupaxin; paxillin fami 22.9 62 0.0021 23.1 3.1 39 197-246 16-54 (80)
214 3na7_A HP0958; flagellar bioge 22.5 16 0.00053 33.3 -0.5 30 12-41 199-233 (256)
215 2kpi_A Uncharacterized protein 21.8 54 0.0018 23.0 2.4 15 195-209 9-23 (56)
216 1vq8_Z 50S ribosomal protein L 21.6 27 0.00093 26.6 0.8 31 10-41 26-56 (83)
217 1e8j_A Rubredoxin; iron-sulfur 21.4 66 0.0023 22.2 2.7 29 10-38 2-44 (52)
218 3ga8_A HTH-type transcriptiona 21.3 39 0.0013 24.9 1.7 17 30-46 2-19 (78)
219 3axs_A Probable N(2),N(2)-dime 21.0 43 0.0015 32.5 2.3 32 10-41 243-274 (392)
220 1ard_A Yeast transcription fac 20.5 33 0.0011 18.4 0.9 12 31-42 3-14 (29)
221 2g45_A Ubiquitin carboxyl-term 20.5 32 0.0011 28.4 1.1 14 9-22 93-106 (129)
222 2kn9_A Rubredoxin; metalloprot 20.4 98 0.0033 23.5 3.7 31 8-38 24-68 (81)
223 2lce_A B-cell lymphoma 6 prote 20.4 46 0.0016 22.9 1.8 35 8-42 14-57 (74)
224 2enz_A NPKC-theta, protein kin 20.2 42 0.0015 23.7 1.6 26 10-37 22-47 (65)
225 2das_A Zinc finger MYM-type pr 20.2 93 0.0032 22.4 3.3 34 196-229 20-55 (62)
226 2enn_A NPKC-theta, protein kin 20.2 45 0.0015 24.6 1.8 27 10-38 33-59 (77)
227 2v3b_B Rubredoxin 2, rubredoxi 20.1 85 0.0029 21.9 3.1 29 10-38 2-44 (55)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=133.19 Aligned_cols=77 Identities=39% Similarity=0.877 Sum_probs=68.9
Q ss_pred CCCCCCCCHHHHhcCCceeeecCC--CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 169 RPENLPASKASIESMPSIEISSGH--VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 169 ~~~~~pas~~~i~~lp~~~~~~~~--~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
.....+++++.|+.||.+++.... ...+..|+||++.|..++.++.|||+|.||..||..||+.+.+||+||..|..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 467889999999999999987654 34567899999999999989999999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-17 Score=123.33 Aligned_cols=71 Identities=32% Similarity=0.736 Sum_probs=61.1
Q ss_pred CHHHHhcCCceeeecCC-CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 176 SKASIESMPSIEISSGH-VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 176 s~~~i~~lp~~~~~~~~-~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+.+.+++||.++++... ...+..|+||++.|..++.++.|||+|.||..||.+||+.+.+||+||+++...
T Consensus 2 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cHhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567889999887643 345678999999999988889999999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=4.6e-15 Score=106.30 Aligned_cols=51 Identities=39% Similarity=0.925 Sum_probs=46.8
Q ss_pred CCcccccccccccccCCcceeec-cCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
+++.+|+||++.|+.++.+..++ |+|.||..||.+|++.+.+||+||.+|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34578999999999988899998 9999999999999999999999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=7.7e-15 Score=112.60 Aligned_cols=56 Identities=46% Similarity=1.188 Sum_probs=49.8
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcchh
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAAA 248 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~~ 248 (351)
...+..|+||++.|...+.++.|+|+|.||..||.+||+.+.+||+||.++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 44567899999999988888889999999999999999999999999999877643
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=9.7e-15 Score=109.46 Aligned_cols=53 Identities=34% Similarity=0.979 Sum_probs=48.2
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..+..|+||++.|..++.++.++|+|.||..||..||+.+.+||+||..|...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 44578999999999888899999999999999999999999999999988764
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=109.85 Aligned_cols=54 Identities=37% Similarity=0.878 Sum_probs=48.4
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
..+..|+||++.|.....++.|+|+|.||..||..||+.+.+||+||.+|....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 445789999999998888889999999999999999999999999999886543
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=9.2e-14 Score=99.30 Aligned_cols=50 Identities=28% Similarity=0.657 Sum_probs=43.8
Q ss_pred CcccccccccccccC-CcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELG-NEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~g-~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
.+..|+||++.|..+ +.++.++|+|.||..||.+|++.+.+||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999654 35778899999999999999999999999999875
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=8.6e-14 Score=108.36 Aligned_cols=51 Identities=27% Similarity=0.685 Sum_probs=42.1
Q ss_pred cccccccccccc-----------cCCcceeec-cCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFE-----------LGNEAREMP-CKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~-----------~g~~~~~lp-C~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|+||++.|+ .++.++.++ |+|.||.+||.+||+.+++||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 456888888775 345567776 999999999999999999999999988654
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=1.9e-13 Score=112.19 Aligned_cols=50 Identities=30% Similarity=0.599 Sum_probs=42.8
Q ss_pred CcccccccccccccCC---------------cceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGN---------------EAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~---------------~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
.+..|+||++.|+..- .++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999998531 3566889999999999999999999999999864
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=2.4e-13 Score=111.53 Aligned_cols=52 Identities=25% Similarity=0.598 Sum_probs=42.3
Q ss_pred CcccccccccccccCC---------------cceeeccCceechhhHHHHh-----hcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGN---------------EAREMPCKHIYHEDCILPWL-----KMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~---------------~~~~lpC~H~FH~~CI~~WL-----~~~~sCP~CR~~l~~~ 246 (351)
.+..|+||++.|.... .++.++|+|.||..||..|| +.+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999997643 23478899999999999999 4567999999987654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=100.90 Aligned_cols=52 Identities=25% Similarity=0.664 Sum_probs=44.6
Q ss_pred CCcccccccccccccC----CcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 194 SSECHCAVCKEAFELG----NEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..+..|+||++.|... ..++.++|+|.||..||..||+.+.+||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4557899999999863 334788999999999999999999999999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.4e-13 Score=101.95 Aligned_cols=53 Identities=26% Similarity=0.719 Sum_probs=45.6
Q ss_pred CCccccccccccccc----CCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 194 SSECHCAVCKEAFEL----GNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 194 ~~~~~C~ICle~~~~----g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
.++..|+||++.|.. ++.++.++|+|.||..||.+|++.+.+||+||.++...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 345789999999975 24457889999999999999999999999999988754
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=98.12 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=44.5
Q ss_pred cccccccccccccC----CcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELG----NEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|+||++.|... +.+..++|+|.||..||.+|++.+.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999752 4457889999999999999999999999999988754
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=100.35 Aligned_cols=50 Identities=28% Similarity=0.660 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..+..|+||++.|.. ++.++|+|.||..||..|++.+.+||+||..|...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999875 68889999999999999999999999999998754
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.2e-12 Score=97.52 Aligned_cols=50 Identities=24% Similarity=0.707 Sum_probs=43.8
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
.+..|+||++.+.. .++.++|+|.||..||..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 35689999999874 358899999999999999999999999999988654
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=102.12 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=44.0
Q ss_pred CcccccccccccccCCcceeeccC-----ceechhhHHHHhhcCC--CCCCCCCCCCcch
Q 045745 195 SECHCAVCKEAFELGNEAREMPCK-----HIYHEDCILPWLKMRN--SCPVCRQELPAAA 247 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~-----H~FH~~CI~~WL~~~~--sCP~CR~~l~~~~ 247 (351)
++..|.||+++|+.++. .++||+ |.||.+||.+||+.++ +||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 45689999999987665 479997 9999999999998664 8999999987654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=98.07 Aligned_cols=52 Identities=23% Similarity=0.578 Sum_probs=44.6
Q ss_pred CCCcccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 193 VSSECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
+..+..|+||++.|.. ++.+ +|+|.||..||..||+.+.+||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456789999999985 4555 99999999999999999999999999987654
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6e-13 Score=99.89 Aligned_cols=50 Identities=28% Similarity=0.790 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
..+..|+||++.+.. +.++|+|.||..||..|++.+.+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 445789999999885 78999999999999999999999999999887553
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=100.42 Aligned_cols=55 Identities=20% Similarity=0.501 Sum_probs=46.7
Q ss_pred CCCCcccccccccccccCCc-ceeeccCceechhhHHHHhhcC---CCCCCCCCCCCcc
Q 045745 192 HVSSECHCAVCKEAFELGNE-AREMPCKHIYHEDCILPWLKMR---NSCPVCRQELPAA 246 (351)
Q Consensus 192 ~~~~~~~C~ICle~~~~g~~-~~~lpC~H~FH~~CI~~WL~~~---~sCP~CR~~l~~~ 246 (351)
.+.++..|+||++.|...+. ++.++|+|.||..||..|++.+ .+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34456789999999987664 7889999999999999999876 6899999987654
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=95.34 Aligned_cols=51 Identities=20% Similarity=0.532 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhh---cCCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK---MRNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++ .+..||+||.++...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3456789999999985 67889999999999999997 455899999988654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.9e-12 Score=97.69 Aligned_cols=48 Identities=25% Similarity=0.658 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
.....|+||++.|.. ++.++|+|.||..||..|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345789999999975 678999999999999999999999999999986
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=6e-12 Score=95.86 Aligned_cols=51 Identities=29% Similarity=0.684 Sum_probs=43.1
Q ss_pred CCCcccccccccccccCCcceeec-cCceechhhHHHHhhcC--CCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR--NSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~--~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.++ |+|.||..||..||+.+ .+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3456789999999985 67899 99999999999999865 5899999976543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.3e-12 Score=93.79 Aligned_cols=50 Identities=18% Similarity=0.565 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhh-cCCCCCCCCCCCCcc
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK-MRNSCPVCRQELPAA 246 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~-~~~sCP~CR~~l~~~ 246 (351)
.++..|+||++.+.. +..++|+|.||..||..|++ .+.+||+||.++..+
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 456789999999975 45689999999999999995 566899999988654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=4.5e-12 Score=107.90 Aligned_cols=50 Identities=32% Similarity=0.852 Sum_probs=44.3
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
.+..|+||++.|.. ++.+||+|.||..||..|+..+.+||+||.+|....
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 34579999999975 788999999999999999999999999999987653
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.21 E-value=1.4e-12 Score=108.82 Aligned_cols=50 Identities=30% Similarity=0.648 Sum_probs=0.9
Q ss_pred Cccccccccccccc-------------CC--cceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFEL-------------GN--EAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~-------------g~--~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
.+..|+||++.|+. ++ .+..++|+|.||..||.+||+.+++||+||.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45689999999975 22 2333589999999999999999999999999764
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.20 E-value=1.1e-11 Score=94.92 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=44.5
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhc-CCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM-RNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCP~CR~~l~~~ 246 (351)
+.++..|+||++.|.. ++.++|+|.||..||..||+. +.+||+||.++...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3456799999999985 678899999999999999987 77999999988654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=2.5e-12 Score=103.75 Aligned_cols=50 Identities=30% Similarity=0.650 Sum_probs=43.3
Q ss_pred CcccccccccccccCCccee-eccCceechhhHHHHhhcC-CCCCCCCCCCCcch
Q 045745 195 SECHCAVCKEAFELGNEARE-MPCKHIYHEDCILPWLKMR-NSCPVCRQELPAAA 247 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~-lpC~H~FH~~CI~~WL~~~-~sCP~CR~~l~~~~ 247 (351)
.+..|+||++.|.. ++. ++|+|.||..||..|++.+ .+||+||.++....
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 45789999999984 566 8999999999999999887 69999999986543
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=7e-12 Score=95.81 Aligned_cols=51 Identities=29% Similarity=0.583 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhc-------CCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM-------RNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~-------~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++. ..+||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3456789999999975 677899999999999999986 56899999998764
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=2.1e-11 Score=93.87 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=43.7
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhc------CCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM------RNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~------~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3456789999999975 568999999999999999987 66899999988754
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.9e-11 Score=88.83 Aligned_cols=44 Identities=23% Similarity=0.593 Sum_probs=38.0
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhh---cCCCCCCC
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK---MRNSCPVC 239 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~sCP~C 239 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++ ...+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4456789999999985 67889999999999999998 45589998
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=93.74 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=43.9
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhc------CCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM------RNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~------~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3455789999999975 677899999999999999987 77899999988754
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=2.8e-11 Score=93.13 Aligned_cols=49 Identities=20% Similarity=0.573 Sum_probs=41.8
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcC--CCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMR--NSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~--~sCP~CR~~l~~~ 246 (351)
...|+||++.|..++... .|+|.||..||.+||+.+ .+||+||.++...
T Consensus 15 i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 368999999999764333 799999999999999987 7999999987654
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2.2e-11 Score=101.18 Aligned_cols=53 Identities=23% Similarity=0.632 Sum_probs=45.8
Q ss_pred CcccccccccccccC----CcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 195 SECHCAVCKEAFELG----NEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 195 ~~~~C~ICle~~~~g----~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
++..|+||++.|+.. +.++.++|+|.||..||..||+.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999752 44588999999999999999999999999999886543
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12 E-value=1.7e-11 Score=99.78 Aligned_cols=51 Identities=24% Similarity=0.672 Sum_probs=44.4
Q ss_pred CCCcccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.+ +|+|.||..||..|++.+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4456789999999975 5666 9999999999999999999999999998764
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=5.1e-11 Score=93.93 Aligned_cols=49 Identities=31% Similarity=0.702 Sum_probs=42.2
Q ss_pred CCCcccccccccccccCCcceeec-cCceechhhHHHHhhcC--CCCCCCCCCCC
Q 045745 193 VSSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR--NSCPVCRQELP 244 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~--~sCP~CR~~l~ 244 (351)
+..+..|+||++.|.. ++.++ |+|.||..||..|+..+ .+||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4456799999999985 78899 99999999999999754 48999999873
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=4e-11 Score=95.97 Aligned_cols=48 Identities=29% Similarity=0.709 Sum_probs=42.4
Q ss_pred cccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|+||++.|.. ++.+ +|+|.||..||..|+..+.+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4689999999985 5566 8999999999999999999999999988764
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.4e-11 Score=85.96 Aligned_cols=44 Identities=32% Similarity=0.798 Sum_probs=37.1
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHh---hcCCCCCCC
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWL---KMRNSCPVC 239 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL---~~~~sCP~C 239 (351)
+..+..|+||++.|+. ++.++|+|.||..||..|+ +.+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3455789999999986 5678999999999999995 456689998
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=5.3e-11 Score=98.86 Aligned_cols=53 Identities=25% Similarity=0.701 Sum_probs=45.4
Q ss_pred Cccccccccccccc----CCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 195 SECHCAVCKEAFEL----GNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 195 ~~~~C~ICle~~~~----g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
....|+||++.|+. +..++.++|+|.||..||.+||+.+.+||+||..+....
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 45689999999975 234478899999999999999999999999999987653
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.06 E-value=3.5e-11 Score=105.09 Aligned_cols=51 Identities=29% Similarity=0.736 Sum_probs=42.9
Q ss_pred CCCcccccccccccccCCcceee-ccCceechhhHHHHhhc-CCCCCCCCCCCCcc
Q 045745 193 VSSECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKM-RNSCPVCRQELPAA 246 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~-~~sCP~CR~~l~~~ 246 (351)
+..+..|+||++.|.. ++.+ +|+|.||..||..||+. +.+||+||..+...
T Consensus 51 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 51 LHSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp CHHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 3445789999999985 4555 99999999999999987 77899999998643
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=6.2e-11 Score=98.75 Aligned_cols=48 Identities=27% Similarity=0.594 Sum_probs=42.3
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCC-CCCCCCCCCCc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN-SCPVCRQELPA 245 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCP~CR~~l~~ 245 (351)
.+..|+||++.|.. ++.++|+|.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999985 67889999999999999998555 89999999876
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.3e-10 Score=85.98 Aligned_cols=51 Identities=22% Similarity=0.461 Sum_probs=40.8
Q ss_pred ccccccccc-ccccCCcc-eeeccCceechhhHHHHhhc-CCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKE-AFELGNEA-REMPCKHIYHEDCILPWLKM-RNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle-~~~~g~~~-~~lpC~H~FH~~CI~~WL~~-~~sCP~CR~~l~~~ 246 (351)
+..|+||++ .|...... ..++|+|.||..||..|+.. ..+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 77754322 46799999999999999764 45899999988654
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=4.5e-11 Score=103.56 Aligned_cols=49 Identities=29% Similarity=0.604 Sum_probs=43.1
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCC-CCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN-SCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCP~CR~~l~~~ 246 (351)
.+..|+||++.|.. ++.++|+|.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999985 67799999999999999998765 899999998765
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.2e-10 Score=94.69 Aligned_cols=49 Identities=24% Similarity=0.733 Sum_probs=41.8
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCC---CCCCCCCCCCcch
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN---SCPVCRQELPAAA 247 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~---sCP~CR~~l~~~~ 247 (351)
...|+||++.|.. ++.++|+|.||..||..|+..+. +||+||..+....
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3589999999975 56789999999999999998654 8999999887643
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.00 E-value=1.6e-10 Score=95.65 Aligned_cols=52 Identities=27% Similarity=0.603 Sum_probs=44.7
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCC-CCCCCCCCCCcch
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN-SCPVCRQELPAAA 247 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCP~CR~~l~~~~ 247 (351)
+..+..|+||++.|.. ++.++|+|.||..||..|++... +||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4456799999999985 57789999999999999998765 9999999987653
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=6.1e-11 Score=97.46 Aligned_cols=49 Identities=29% Similarity=0.766 Sum_probs=42.7
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhc-CCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM-RNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCP~CR~~l~~~ 246 (351)
.+..|+||++.|.. ++.++|+|.||..||..|++. +.+||+||..+...
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSW 63 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHH
T ss_pred CCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCcc
Confidence 35789999999985 788899999999999999976 66899999998753
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=3.9e-10 Score=88.51 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
+..+..|+||++.|+. +++++|||.|+..||..||..+.+||+|+.++....
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 3456789999999996 789999999999999999998899999999987654
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.94 E-value=3.7e-10 Score=92.88 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=43.0
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhc-CCCCCCCCCCCCcch
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM-RNSCPVCRQELPAAA 247 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~-~~sCP~CR~~l~~~~ 247 (351)
+..|+||++.|.. ++.++|+|.||..||..|++. ..+||+||..+....
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4689999999975 677999999999999999987 679999999987654
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=6.1e-10 Score=90.17 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCCcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 193 VSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
+..+..|+||++.|+. +++++|+|.|+..||..||..+.+||+||.++....
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 3456799999999996 789999999999999999998889999999987654
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=4.7e-10 Score=110.89 Aligned_cols=49 Identities=27% Similarity=0.695 Sum_probs=43.4
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhh-cCCCCCCCCCCCCcch
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK-MRNSCPVCRQELPAAA 247 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~-~~~sCP~CR~~l~~~~ 247 (351)
...|+||++.+.. ++.+||+|.||..||..|+. .+.+||+||.++....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4689999999865 78899999999999999998 6789999999887653
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=3e-10 Score=82.04 Aligned_cols=46 Identities=22% Similarity=0.625 Sum_probs=39.8
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
++..|+||++.|.. ++.|+|+|.||..||..| ...||+||..+...
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45689999999985 688999999999999885 66899999988754
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.91 E-value=5.8e-10 Score=89.96 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCcccccccccccccCCcceeeccC-ceechhhHHHHhhcCCCCCCCCCCCCcchh
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCK-HIYHEDCILPWLKMRNSCPVCRQELPAAAA 248 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~-H~FH~~CI~~WL~~~~sCP~CR~~l~~~~~ 248 (351)
..+..|+||++.|+. +++++|+ |.|+..||..||..+.+||+||.++.....
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 456789999999996 7889999 999999999999988899999999876543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=1.9e-10 Score=98.65 Aligned_cols=51 Identities=20% Similarity=0.492 Sum_probs=43.5
Q ss_pred CCCCcccccccccccccCCcceeeccCceechhhHHHHhhcCC-CCCCCCCCCCc
Q 045745 192 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN-SCPVCRQELPA 245 (351)
Q Consensus 192 ~~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCP~CR~~l~~ 245 (351)
.+..+..|+||++.|.. ++.++|+|.||..||..|++... +||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34566899999999986 57789999999999999998665 89999998643
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1e-09 Score=85.03 Aligned_cols=54 Identities=22% Similarity=0.530 Sum_probs=42.7
Q ss_pred CCCcccccccccccccCCcceeec--cCceechhhHHHHhh-cCCCCCCCCCCCCcch
Q 045745 193 VSSECHCAVCKEAFELGNEAREMP--CKHIYHEDCILPWLK-MRNSCPVCRQELPAAA 247 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~lp--C~H~FH~~CI~~WL~-~~~sCP~CR~~l~~~~ 247 (351)
+.++..|+||++.+...+ ++.+| |+|.||..||..|++ ....||+||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 455678999999986533 44555 999999999999985 4568999999887653
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=8.5e-10 Score=81.97 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=41.0
Q ss_pred CcccccccccccccCCcceee--ccCce-echhhHHHHhhcCCCCCCCCCCCCc
Q 045745 195 SECHCAVCKEAFELGNEAREM--PCKHI-YHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l--pC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
++..|.||++.+.. +..+ ||+|. |+..|+..|++.+..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 34689999998774 4555 99999 8999999999988999999998854
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=2e-09 Score=79.69 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=40.7
Q ss_pred CcccccccccccccCCcceee--ccCce-echhhHHHHhhcCCCCCCCCCCCCc
Q 045745 195 SECHCAVCKEAFELGNEAREM--PCKHI-YHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l--pC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
.+..|.||++.+.. +..+ ||+|. |+..|+..|.+....||+||.+|..
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 34689999998764 4455 99998 9999999999888899999998854
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.3e-09 Score=89.87 Aligned_cols=46 Identities=22% Similarity=0.591 Sum_probs=40.3
Q ss_pred cccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|+||++.|.. ++.+ +|+|.||..||..|+. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 4689999999975 6777 9999999999999998 8899999988543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.77 E-value=4.3e-10 Score=85.81 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=39.0
Q ss_pred cccccccccccccCCcceeeccCce-echhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHI-YHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|.||++.+.. ++.+||+|. ||..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 4689999999875 788999999 999999999 8999999988654
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=6.9e-09 Score=82.69 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCcceeec-cCceechhhHHHHhhcC------CCCCC--CCCC-CCcch
Q 045745 194 SSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR------NSCPV--CRQE-LPAAA 247 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~------~sCP~--CR~~-l~~~~ 247 (351)
..+..|+||++.|+. +++++ |+|.|+..||..||..+ .+||+ |+.. +....
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 345789999999996 78886 99999999999999764 48999 9876 65544
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=6.7e-09 Score=90.83 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=44.8
Q ss_pred CCCCcccccccccccccCCcceeeccCceechhhHHHHhhcCC-CCCCCCCCCCcch
Q 045745 192 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRN-SCPVCRQELPAAA 247 (351)
Q Consensus 192 ~~~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~-sCP~CR~~l~~~~ 247 (351)
.+.++..|+||++.|.. ++.++|+|.||..||..||+... +||+||..|....
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 34456799999999985 57789999999999999997654 9999999987653
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=9.1e-09 Score=95.53 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcC-CCCCCCCCCCCcch
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMR-NSCPVCRQELPAAA 247 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~-~sCP~CR~~l~~~~ 247 (351)
.....|+||++.|.. ++++||+|.||..||..||..+ .+||+||.++....
T Consensus 206 ~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 356789999999986 7899999999999999999864 46999999997654
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.62 E-value=1.8e-08 Score=74.12 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=37.0
Q ss_pred CcccccccccccccCCcceeeccC--c---eechhhHHHHhhc--CCCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMPCK--H---IYHEDCILPWLKM--RNSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~--H---~FH~~CI~~WL~~--~~sCP~CR~~l~ 244 (351)
+...|.||+++. ++. .++||+ | .||..||.+||.. +.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456899999983 233 468954 5 9999999999964 568999999775
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.60 E-value=1e-08 Score=99.41 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=40.1
Q ss_pred Cccccccccccccc-CCcce----eeccCceechhhHHHHhhcC-----------CCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFEL-GNEAR----EMPCKHIYHEDCILPWLKMR-----------NSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~-g~~~~----~lpC~H~FH~~CI~~WL~~~-----------~sCP~CR~~l~~~ 246 (351)
...+|+||++.+.. ++.+. ...|+|.||..||.+||+.. .+||.||.+|...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 44689999999987 33222 23599999999999999752 4699999988643
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.55 E-value=3.9e-08 Score=87.65 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=44.6
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcC-CCCCCCCCCCCcchh
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMR-NSCPVCRQELPAAAA 248 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~-~sCP~CR~~l~~~~~ 248 (351)
..+..|+||++.|.. ++++||||.|+..||..||..+ .+||+|+.++.....
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 455789999999996 7888999999999999999864 479999999876543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.1e-08 Score=76.40 Aligned_cols=44 Identities=23% Similarity=0.577 Sum_probs=37.1
Q ss_pred cccccccccccccCCcceeeccCce-echhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHI-YHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|.||++.+.. ++.+||+|. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 3579999999875 778999999 99999965 37899999988653
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.3e-08 Score=72.78 Aligned_cols=45 Identities=27% Similarity=0.664 Sum_probs=38.4
Q ss_pred CcccccccccccccCCcceeeccCce-echhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHI-YHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
++..|.||++.+.. ++.+||+|. ||..|+.. ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 45689999998764 788999999 99999984 47999999988654
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.42 E-value=5.4e-08 Score=75.24 Aligned_cols=44 Identities=34% Similarity=0.662 Sum_probs=38.2
Q ss_pred cccccccccccccCCcceeeccCce-echhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHI-YHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
+..|.||++.+.. +..+||+|. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3589999998775 788999999 999999987 4999999988664
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=8.1e-08 Score=76.06 Aligned_cols=52 Identities=19% Similarity=0.587 Sum_probs=39.9
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhc--------CCCCCC--CCCC--CCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM--------RNSCPV--CRQE--LPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~--------~~sCP~--CR~~--l~~~ 246 (351)
...+|+||++++...+.....+|+|.||.+||..|++. ..+||. |+.. +...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 34689999999886443333479999999999999963 137999 9998 6544
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=1.2e-07 Score=69.83 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=42.9
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCCCCCcch
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQELPAAA 247 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~ 247 (351)
..|+||++.|++ ++.+ +|+|.|...||.+||+.+.+||+++.+|...+
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 579999999995 6777 89999999999999998889999999987654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.28 E-value=2.5e-07 Score=90.27 Aligned_cols=45 Identities=27% Similarity=0.684 Sum_probs=39.7
Q ss_pred CcccccccccccccCCcceeeccCce-echhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHI-YHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~-FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
.+..|+||++.+.. ++.+||+|. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 45789999999875 788999999 999999998 7899999988654
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4e-07 Score=85.46 Aligned_cols=52 Identities=23% Similarity=0.523 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCcceeeccCceechhhHHHHhhcC--CCCCC--CCCCCCcch
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMR--NSCPV--CRQELPAAA 247 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~--~sCP~--CR~~l~~~~ 247 (351)
..+..|+||++.|+. .|+.+.|+|.|++.||..|++.+ .+||+ |+..+....
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 456789999999984 34445899999999999999764 37999 999876554
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=7.4e-06 Score=65.92 Aligned_cols=49 Identities=27% Similarity=0.649 Sum_probs=39.6
Q ss_pred cccccccccccCCcceeeccCceechhhHHHHhh-cCCCCCCCCCCCCcchh
Q 045745 198 HCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK-MRNSCPVCRQELPAAAA 248 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~-~~~sCP~CR~~l~~~~~ 248 (351)
.|.+|---+.. ..+.+||+|+||.+|+..|.+ ..++||.|+.+|..-+.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47777766653 468899999999999999985 46799999999876543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.83 E-value=6.9e-06 Score=76.13 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=40.0
Q ss_pred cccccccccccccCCcceeec-cCceechhhHHHHhhcCC--CCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRN--SCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~--sCP~CR~~l~~~ 246 (351)
-..|.||++....|. ..+ |+|.||..|+..|++.+. .||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 468999999998763 333 999999999999998765 899999977655
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.57 E-value=0.01 Score=47.10 Aligned_cols=50 Identities=24% Similarity=0.558 Sum_probs=41.1
Q ss_pred CcccccccccccccCCcceeecc-CceechhhHHHHhhcCCCCCCCCCCCCcchhh
Q 045745 195 SECHCAVCKEAFELGNEAREMPC-KHIYHEDCILPWLKMRNSCPVCRQELPAAAAA 249 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC-~H~FH~~CI~~WL~~~~sCP~CR~~l~~~~~~ 249 (351)
.-.-|-.|+-+.+. .+.| .|.+|..||..-|...+.||+|+++|+..-..
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34579999988762 4445 59999999999999999999999999887543
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.91 E-value=0.048 Score=40.36 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=31.9
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcCC----CCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRN----SCPVCRQE 242 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~----sCP~CR~~ 242 (351)
....|.||.+. ..+..-. |...||..|+.+.|.... .||.|...
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34679999853 2333333 999999999999986432 69999764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.90 E-value=0.049 Score=42.72 Aligned_cols=33 Identities=18% Similarity=0.553 Sum_probs=25.5
Q ss_pred CcccccccccccccCCccee--eccCceechhhHHHH
Q 045745 195 SECHCAVCKEAFELGNEARE--MPCKHIYHEDCILPW 229 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~--lpC~H~FH~~CI~~W 229 (351)
++..|.||++.+.. .++. +.|+|.|+..||..|
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 34689999987543 2344 889999999999983
No 76
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=90.48 E-value=0.19 Score=41.07 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=27.3
Q ss_pred CceecccCCceeecCcCCCCCc-cCCCCCCCceEeec
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDT-TCPHCHGGFIEQIE 45 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~-~CP~C~~GFvEEi~ 45 (351)
..|||..|...+.+.. ... .||.|++..++-+.
T Consensus 72 ~~~~C~~CG~~~e~~~---~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 72 VELECKDCSHVFKPNA---LDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp CEEECSSSSCEECSCC---STTCCCSSSSSCCCEEEE
T ss_pred ceEEcCCCCCEEeCCC---CCCCcCccccCCCcEEec
Confidence 5799999999988754 367 89999999887664
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.35 E-value=0.23 Score=35.94 Aligned_cols=44 Identities=32% Similarity=0.727 Sum_probs=30.6
Q ss_pred CCcccccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQ 241 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~ 241 (351)
..+..|.||.+. + .+.... |...||..|+.+=|.. .-.||.|..
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345789999873 2 233333 8999999999986542 226999954
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.03 E-value=0.28 Score=35.47 Aligned_cols=45 Identities=33% Similarity=0.600 Sum_probs=31.0
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQEL 243 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~~l 243 (351)
.+..|.||.+. + .+.... |...||..|+.+-|... -.||.|....
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999863 2 233333 99999999999766432 2699997653
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.94 E-value=0.16 Score=36.83 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=33.0
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhh-----cCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLK-----MRNSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCP~CR~ 241 (351)
+...|.||...+..+...+... |..-||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4467999999886544444444 999999999875432 2346999965
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.93 E-value=0.42 Score=37.14 Aligned_cols=32 Identities=22% Similarity=0.671 Sum_probs=23.2
Q ss_pred CCcccccccccccccCCcceeec---cCceechhhHHHH
Q 045745 194 SSECHCAVCKEAFELGNEAREMP---CKHIYHEDCILPW 229 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp---C~H~FH~~CI~~W 229 (351)
..+..|.||.-- .. -..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~---~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TA---ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CS---SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-cc---cceeccccccccccHhhcccc
Confidence 456789999732 22 13455 8899999999996
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.27 E-value=0.53 Score=51.25 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCcccccccccccccCCcceeeccC-ceechhhHHHHhhcCCCCCCCCCCCCcchhhhh
Q 045745 194 SSECHCAVCKEAFELGNEAREMPCK-HIYHEDCILPWLKMRNSCPVCRQELPAAAAAAA 251 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lpC~-H~FH~~CI~~WL~~~~sCP~CR~~l~~~~~~~~ 251 (351)
.++..|+|-++.|++ ++++|-+ +.|-..+|.+||..+.+||+=|.+|......+.
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 345789999999996 8899987 689999999999999999999999987654433
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.89 E-value=0.44 Score=41.62 Aligned_cols=46 Identities=30% Similarity=0.632 Sum_probs=32.5
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~~l~ 244 (351)
.+..|.||.+. |+ +.... |...||..|+.+-|... -.||.|+....
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34679999854 33 33333 89999999998877542 26999987543
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.05 E-value=0.75 Score=40.58 Aligned_cols=49 Identities=20% Similarity=0.520 Sum_probs=35.4
Q ss_pred ccccccccccccCCc---ceeec-cCceechhhHHHH------hh-----cCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNE---AREMP-CKHIYHEDCILPW------LK-----MRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~---~~~lp-C~H~FH~~CI~~W------L~-----~~~sCP~CR~~l~~ 245 (351)
..|+||...+..++. .+... |...||..|+.-- +. ..-.||.|+..-+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999999987653 44444 9999999998532 11 14589999886554
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.71 E-value=0.5 Score=42.11 Aligned_cols=45 Identities=31% Similarity=0.633 Sum_probs=31.8
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQEL 243 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~~l 243 (351)
.+..|.||.+. | .+.... |...||..|+.+.|... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999853 2 233333 89999999999877532 2699998754
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.09 E-value=0.29 Score=34.63 Aligned_cols=43 Identities=37% Similarity=0.851 Sum_probs=29.3
Q ss_pred CCcccccccccccccCCcceeec-cCceechhhHHHHhhcCC----CCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRN----SCPVCR 240 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~----sCP~CR 240 (351)
..+..|.||.+. + .+.... |...||..|+.+=|.... .||.|.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 455789999974 2 233333 999999999997654321 487774
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.05 E-value=0.45 Score=35.45 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=33.3
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQELP 244 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~~l~ 244 (351)
....|.||..... ++..+... |...||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3457999987753 33333333 9999999999876542 336999976543
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.21 E-value=0.83 Score=31.37 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=28.5
Q ss_pred cccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQ 241 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~ 241 (351)
.|.||.+.-.. +....-. |...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899875432 2233333 9999999999865532 225999964
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=79.66 E-value=0.35 Score=35.38 Aligned_cols=43 Identities=35% Similarity=0.723 Sum_probs=30.0
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~ 241 (351)
.+..|.||.+. + .+.... |...||..|+.+=|... -.||.|..
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 45789999964 2 233333 99999999999765432 25999954
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.94 E-value=0.97 Score=36.12 Aligned_cols=46 Identities=28% Similarity=0.543 Sum_probs=29.7
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhc----CCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKM----RNSCPVCR 240 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~----~~sCP~CR 240 (351)
.+..|.||.+.=+..+.+.=-.|...||..||..++.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999886332221222238999999999988742 12466664
No 90
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.61 E-value=0.93 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCCCceecccCCceeecCcCCCCCccCCCCCCCceEeec
Q 045745 7 TTTESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQIE 45 (351)
Q Consensus 7 ~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi~ 45 (351)
+......|..|++.|.+.. +.| .|++-|--.--
T Consensus 11 ~~~~~~rC~~C~kkvgl~~-----f~C-rCg~~FC~~HR 43 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKVGVMG-----FKC-KCGSTFCGSHR 43 (64)
T ss_dssp CSCCSCSCTTTCCCCTTSC-----EEC-TTSCEECSSSC
T ss_pred CCCcCCcChhhCCcccccC-----eEe-ecCCEecccCC
Confidence 3346789999999987764 999 99999987553
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=77.99 E-value=0.61 Score=33.34 Aligned_cols=43 Identities=37% Similarity=0.834 Sum_probs=30.0
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~ 241 (351)
.+..|.||.+. + ...... |...||..|+.+=|... -.||.|..
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45689999974 2 233333 99999999999765432 25888854
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=77.43 E-value=1.1 Score=36.12 Aligned_cols=44 Identities=23% Similarity=0.537 Sum_probs=29.2
Q ss_pred cccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQ 241 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~ 241 (351)
.|.||.+.-+..+.+..-. |...||..|+.+-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886532222333333 99999999998766432 26999975
No 93
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=76.77 E-value=1.9 Score=36.23 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCceecccCCceeecCcC--------CCC----------CccCCCCCCCceEeec
Q 045745 9 TESFWCYRCLRIVSSLSQ--------FDG----------DTTCPHCHGGFIEQIE 45 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~~--------~~~----------~~~CP~C~~GFvEEi~ 45 (351)
...+||..|...+..... .+. ...||.|++.-++-+.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~ 122 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVK 122 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEec
Confidence 357999999999876530 012 4789999999887543
No 94
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=76.71 E-value=1.6 Score=31.98 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 9 TESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
.-.|-|-.|...|.+... ..+.||+|+.-.|-..
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCCCBCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEEEEEe
Confidence 357999999999998863 7899999999877654
No 95
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.28 E-value=1.7 Score=32.86 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=27.3
Q ss_pred CCCCCCCceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 4 LPTTTTESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 4 ~~~~~~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
+..+......|+.|++.|.+.. +.| .|+.-|--..
T Consensus 18 ~~~~k~~~~RC~~C~kkvgL~~-----f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 18 LDPPKSTATRCLSCNKKVGVTG-----FKC-RCGSTFCGTH 52 (74)
T ss_dssp SCCTTCCCCBCSSSCCBCTTTC-----EEC-TTSCEECTTT
T ss_pred cccCcccCccchhhcCcccccc-----eEe-ccCCEecccc
Confidence 3334456789999999998874 999 8999998654
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.18 E-value=2.1 Score=33.35 Aligned_cols=45 Identities=33% Similarity=0.713 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCcceeec-cCceechhhHHHHhhcCC----CCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRN----SCPVCRQE 242 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~----sCP~CR~~ 242 (351)
..+..|.||.+. + .+.... |.-.||..|+.+=|..-. .||.|...
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345789999964 2 233333 899999999988664322 69999764
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.26 E-value=1.6 Score=31.47 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=32.1
Q ss_pred CCcccccccccccccCC-cceeec-cCceechhhHHHHhhc-------CCCCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGN-EAREMP-CKHIYHEDCILPWLKM-------RNSCPVCRQE 242 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~-~~~~lp-C~H~FH~~CI~~WL~~-------~~sCP~CR~~ 242 (351)
.++..|.||.......+ .+.... |...||..|+.+=|.. .=.|+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34578999998653322 233333 9999999999875521 2268888553
No 98
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=71.30 E-value=2.7 Score=32.09 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=25.9
Q ss_pred CCceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 9 TESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
...+||-.|...|..... ...++||.|+--|-=.-
T Consensus 23 ~~~~wCP~C~~~~~~~~~-~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYERE-QLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CCEECCSSSCCCEECCCS-CSCEECTTTCCEECSSS
T ss_pred CCEeECcCCCchheecCC-CCceEeCCCCCcccccc
Confidence 356799999998866543 45689999998886433
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.78 E-value=2.7 Score=31.61 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=30.7
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHhh-----cCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLK-----MRNSCPVCRQEL 243 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCP~CR~~l 243 (351)
..| ||...+..+...+... |..-||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456 9988875444444444 999999999864321 234799997643
No 100
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.90 E-value=1.6 Score=38.46 Aligned_cols=43 Identities=33% Similarity=0.719 Sum_probs=29.9
Q ss_pred cccccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQE 242 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~~ 242 (351)
+..|.||.+. |+ ..... |...||..|+.+=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 33 23333 8899999999876643 2269999765
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=69.68 E-value=2.2 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=29.2
Q ss_pred cccccccccccCCcceeec--cCceechhhHHHHh----hcCCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP--CKHIYHEDCILPWL----KMRNSCPVCR 240 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp--C~H~FH~~CI~~WL----~~~~sCP~CR 240 (351)
.|.||...+..+...+.-. |..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789988886555444443 88899999986432 2445788885
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.46 E-value=3.9 Score=32.74 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=22.1
Q ss_pred Ccccccccccccc-----cCCcceee-ccCceechhhHHH
Q 045745 195 SECHCAVCKEAFE-----LGNEAREM-PCKHIYHEDCILP 228 (351)
Q Consensus 195 ~~~~C~ICle~~~-----~g~~~~~l-pC~H~FH~~CI~~ 228 (351)
....|.+|+..=. .+++.+.- .|...||..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 4467999987531 11223333 3999999999963
No 103
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=66.81 E-value=4.1 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=27.8
Q ss_pred CceecccCCceeecCcCC-CCCccCCCCCCCceEeeccC
Q 045745 10 ESFWCYRCLRIVSSLSQF-DGDTTCPHCHGGFIEQIETE 47 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~-~~~~~CP~C~~GFvEEi~~~ 47 (351)
..|-|-.|-+.+.....+ --++.||+|+=-.|..+..+
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p 40 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP 40 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecCC
Confidence 459999999999876543 45899999998888776543
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.79 E-value=1.3 Score=34.20 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=32.3
Q ss_pred cccccccccccccC-Ccceeec-cCceechhhHHHHhhc--------CCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELG-NEAREMP-CKHIYHEDCILPWLKM--------RNSCPVCRQEL 243 (351)
Q Consensus 196 ~~~C~ICle~~~~g-~~~~~lp-C~H~FH~~CI~~WL~~--------~~sCP~CR~~l 243 (351)
+..|.||...-... +.+.... |...||..|+.+=|.. .=.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 45799999864322 2333333 9999999999987642 22699996543
No 105
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=65.67 E-value=2.2 Score=31.76 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCccccccccccc-ccCCcceeec-cCceechhhHHHHhhc--CCCCCCCCC
Q 045745 194 SSECHCAVCKEAF-ELGNEAREMP-CKHIYHEDCILPWLKM--RNSCPVCRQ 241 (351)
Q Consensus 194 ~~~~~C~ICle~~-~~g~~~~~lp-C~H~FH~~CI~~WL~~--~~sCP~CR~ 241 (351)
..+..|.||.+.- ..++..+... |.-.||..|+..-+.- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3457899998764 2223333333 9999999999864321 225777743
No 106
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=63.98 E-value=4.6 Score=30.05 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=25.4
Q ss_pred CCceecccCCceeecCcCCCCCccCCCCCCCce
Q 045745 9 TESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFI 41 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFv 41 (351)
.-.|-|-.|...+.+.. .+.+.||.|+.-.|
T Consensus 26 ~v~Y~C~~CG~~~e~~~--~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSR--TDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCT--TSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCC--CCCccCCCCCceEe
Confidence 46799999999988875 36789999998444
No 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=63.63 E-value=3.9 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=25.4
Q ss_pred CcccccccccccccCCcceee--ccCceechhhHHH
Q 045745 195 SECHCAVCKEAFELGNEAREM--PCKHIYHEDCILP 228 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l--pC~H~FH~~CI~~ 228 (351)
....|.+|...+..++..+.. .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 346799999998776555555 4999999999753
No 108
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.95 E-value=4 Score=29.69 Aligned_cols=39 Identities=18% Similarity=0.554 Sum_probs=27.0
Q ss_pred cccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 198 HCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
.|+.|.+.+..++.+.. -+..||..| ..|-.|+..|...
T Consensus 2 ~C~~C~~~I~~~~~v~a--~~~~~H~~C--------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS--LGKDWHRPC--------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEE--TTEEEETTT--------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEE--CCccccCCC--------CCccccCccCCCC
Confidence 48888888775544333 378888887 4688888877654
No 109
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=61.83 E-value=5.8 Score=30.26 Aligned_cols=32 Identities=19% Similarity=0.603 Sum_probs=26.0
Q ss_pred ceecccCCceeecCcCCCCCccCCCCCCCceEeecc
Q 045745 11 SFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQIET 46 (351)
Q Consensus 11 ~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi~~ 46 (351)
-+.||.|-...... .-..||.|+..=|..+.-
T Consensus 15 iLrC~aCf~~t~~~----~k~FCp~CGn~TL~Rvsv 46 (79)
T 2con_A 15 ILRCHGCFKTTSDM----NRVFCGHCGNKTLKKVSV 46 (79)
T ss_dssp EEECSSSCCEESCS----SCCSCSSSCCSCCEEEEC
T ss_pred eeEecccceECCCc----ccccccccCcccceEEEE
Confidence 46899999987554 369999999999988854
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.83 E-value=3.9 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=28.9
Q ss_pred cccccccccccccCCcceeec--cCceechhhHHHHhhc
Q 045745 196 ECHCAVCKEAFELGNEAREMP--CKHIYHEDCILPWLKM 232 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp--C~H~FH~~CI~~WL~~ 232 (351)
...|.+|.|.+|. ..-++.| =.|.||..|-+..++.
T Consensus 15 ~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence 3579999999996 4455666 4699999999999875
No 111
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.76 E-value=5.3 Score=29.01 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=31.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+..++.+ ..-+..||.+| ..|-.|+..|...
T Consensus 10 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccCCC
Confidence 5799999998865543 34578999988 5699999888643
No 112
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.53 E-value=3.3 Score=32.53 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=29.0
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHhhc---CCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM---RNSCPVCRQE 242 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~---~~sCP~CR~~ 242 (351)
..| ||......+. .+... |...||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 8877655432 33333 9999999999764332 2379999753
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.86 E-value=1.7 Score=33.92 Aligned_cols=46 Identities=30% Similarity=0.522 Sum_probs=30.4
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~ 241 (351)
.+..|.||...-.. +.++... |...||..|+.+=|.. .=.||.|..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44679999986432 2233333 9999999999865532 225999954
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.60 E-value=9 Score=32.31 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=31.4
Q ss_pred CCcccccccccccccCCcceee-ccCceechhhHHHHhh---------c--CCCCCCCCCC
Q 045745 194 SSECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLK---------M--RNSCPVCRQE 242 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~---------~--~~sCP~CR~~ 242 (351)
..+..|.||.+-=+ +.-. .|...||..||.+=|. . .=.||+|+.+
T Consensus 61 g~~d~C~vC~~GG~----LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGN----LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSS----EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCc----EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35678999997422 3333 3999999999998763 1 1269999754
No 115
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.22 E-value=8.3 Score=28.56 Aligned_cols=39 Identities=31% Similarity=0.652 Sum_probs=30.1
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
...|+.|.+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 3579999999886654433 478999988 57999988875
No 116
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.25 E-value=5 Score=29.40 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 9 TESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
.....|..|++.|.+.. +.| .|+.-|--.-
T Consensus 13 ~~~~rC~~C~kkvgl~~-----f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTG-----FMC-RCGTTFCGSH 42 (64)
T ss_dssp SSCCCCTTTCCCCCTTC-----EEC-SSSCEECTTT
T ss_pred CcCCcChhhCCccCccC-----EEe-ecCCEecccc
Confidence 46789999999998774 999 7999998654
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.61 E-value=2.2 Score=33.04 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCccccccccccc-ccCCcceeec-cCceechhhHHHHhhc--CCCCCCCCCC
Q 045745 194 SSECHCAVCKEAF-ELGNEAREMP-CKHIYHEDCILPWLKM--RNSCPVCRQE 242 (351)
Q Consensus 194 ~~~~~C~ICle~~-~~g~~~~~lp-C~H~FH~~CI~~WL~~--~~sCP~CR~~ 242 (351)
..+..|.||.+.- ...+.++... |.-.||..|+.+-+.- .=.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 3457899999753 2222333333 8899999999864321 2268888553
No 118
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.54 E-value=2.9 Score=31.56 Aligned_cols=44 Identities=34% Similarity=0.688 Sum_probs=28.2
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHhhc-----CCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM-----RNSCPVCRQ 241 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~-----~~sCP~CR~ 241 (351)
..|.||...-.. .....-. |...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368888864222 2233333 9999999999965532 226888864
No 119
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=57.82 E-value=4.9 Score=32.01 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=33.5
Q ss_pred ccccccccccccCCcceee--ccCceechhhHHHHhh----------cCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREM--PCKHIYHEDCILPWLK----------MRNSCPVCRQEL 243 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l--pC~H~FH~~CI~~WL~----------~~~sCP~CR~~l 243 (351)
..|.||...+..+...+.. .|...||..|+.--.. ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4799999998765555555 3899999999863210 234799997643
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=57.73 E-value=2.6 Score=31.12 Aligned_cols=43 Identities=26% Similarity=0.590 Sum_probs=26.5
Q ss_pred cccccccccccCCcceeec-cCceechhhHHHHhhc-----CCCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM-----RNSCPVCRQ 241 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~-----~~sCP~CR~ 241 (351)
.|.||...-.. ..+..-. |...||..||.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677653222 2222333 8999999999965542 226999865
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.38 E-value=2 Score=36.77 Aligned_cols=46 Identities=22% Similarity=0.516 Sum_probs=31.1
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhh-----cCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLK-----MRNSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCP~CR~ 241 (351)
....| ||......+...+... |...||..|+.--.. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34578 9998765444444444 999999999953221 2347999975
No 122
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.11 E-value=9.7 Score=28.24 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=30.8
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+..++.+. .-+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 357999999987655443 3578999999 5688998887654
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=57.04 E-value=10 Score=31.44 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCCcccccccccccccCCcceee-ccCceechhhHHHHh------hc-----CCCCCCCCC
Q 045745 193 VSSECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWL------KM-----RNSCPVCRQ 241 (351)
Q Consensus 193 ~~~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL------~~-----~~sCP~CR~ 241 (351)
...+..|.||.+-= ++.-- .|...||.+||.+-| +. .=.|++|+-
T Consensus 54 Dg~~~~C~vC~dGG----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556799998641 12222 289999999999853 22 126999954
No 124
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=56.22 E-value=2.6 Score=31.85 Aligned_cols=25 Identities=36% Similarity=0.792 Sum_probs=19.0
Q ss_pred cCceechhhHHHHhhc----C-CCCCCCCC
Q 045745 217 CKHIYHEDCILPWLKM----R-NSCPVCRQ 241 (351)
Q Consensus 217 C~H~FH~~CI~~WL~~----~-~sCP~CR~ 241 (351)
|...||..|+.+-|.. . =.||.|+.
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 8899999999976642 2 36999875
No 125
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=53.52 E-value=18 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.6
Q ss_pred CcccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 195 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
....|..|.+.+.. . .+..-+..||.+| ..|-.|...|...
T Consensus 24 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCCCC
Confidence 34579999998874 2 2334678999998 5699999888653
No 126
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.38 E-value=5 Score=32.23 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred ccccccccccc----cCC--cceee-ccCceechhhHHHHh
Q 045745 197 CHCAVCKEAFE----LGN--EAREM-PCKHIYHEDCILPWL 230 (351)
Q Consensus 197 ~~C~ICle~~~----~g~--~~~~l-pC~H~FH~~CI~~WL 230 (351)
..|.||+..-. .|+ ..+.- .|...||..||..++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChh
Confidence 36999987542 122 22222 389999999998763
No 127
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=53.01 E-value=5.4 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=8.8
Q ss_pred CCccCCCCCCCceEee
Q 045745 29 GDTTCPHCHGGFIEQI 44 (351)
Q Consensus 29 ~~~~CP~C~~GFvEEi 44 (351)
.-+.||.|++.|.=|-
T Consensus 26 ~lP~CP~C~seytYeD 41 (138)
T 2akl_A 26 TLPPCPQCNSEYTYED 41 (138)
T ss_dssp CSCCCTTTCCCCCEEC
T ss_pred cCCCCCCCCCcceEec
Confidence 3455666666555543
No 128
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=52.76 E-value=9.1 Score=30.69 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCcccccccccccccCCcceeec---cCceechhhHHHHhhcC----CCCCCCCCCCCcc
Q 045745 194 SSECHCAVCKEAFELGNEAREMP---CKHIYHEDCILPWLKMR----NSCPVCRQELPAA 246 (351)
Q Consensus 194 ~~~~~C~ICle~~~~g~~~~~lp---C~H~FH~~CI~~WL~~~----~sCP~CR~~l~~~ 246 (351)
..+..|.||.+. .+++.-. |...||..|+. |... -.||.|.-.+...
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 345689999842 2333443 88999999997 5432 2588776555443
No 129
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.38 E-value=14 Score=26.26 Aligned_cols=40 Identities=25% Similarity=0.511 Sum_probs=29.6
Q ss_pred cccccccccccc--CCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFEL--GNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~--g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. ++. .+..-+..||.+| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTK-YISFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCS-CEECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcc-eEEECCcccCccc--------CEeccCCCcCCC
Confidence 579999998875 223 2334688999998 479999988853
No 130
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.24 E-value=13 Score=28.99 Aligned_cols=43 Identities=28% Similarity=0.621 Sum_probs=27.0
Q ss_pred cccccccccccccCCcceee-c--cC-ceechhhHHHHhhc----CCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREM-P--CK-HIYHEDCILPWLKM----RNSCPVCRQEL 243 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-p--C~-H~FH~~CI~~WL~~----~~sCP~CR~~l 243 (351)
...| ||..... ++ .+.. . |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3557 9988643 32 2222 2 55 689999997 432 23699997643
No 131
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.31 E-value=14 Score=27.04 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=30.9
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+..++.+ +..=+..||..| .+|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCCC
Confidence 4799999998865543 333578999988 5689999888654
No 132
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=49.71 E-value=8.3 Score=32.12 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=29.5
Q ss_pred Ccccccccccccc-cCCcceeec-cCceechhhHHHHhhcC--C--CCCCCCC
Q 045745 195 SECHCAVCKEAFE-LGNEAREMP-CKHIYHEDCILPWLKMR--N--SCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~-~g~~~~~lp-C~H~FH~~CI~~WL~~~--~--sCP~CR~ 241 (351)
.+..|.+|...|. .+..-.... |+|.+|..|-..-.... . .|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4578999999994 323233333 99999999965421111 1 3777754
No 133
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.77 E-value=11 Score=36.70 Aligned_cols=48 Identities=23% Similarity=0.574 Sum_probs=33.2
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhh---cCC--CCCCCCCCCCcch
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLK---MRN--SCPVCRQELPAAA 247 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~---~~~--sCP~CR~~l~~~~ 247 (351)
..|++-+..|+. .++...|.|.-|.+- ..||. ... .||+|...+...+
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc--cCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHH
Confidence 579988888763 577788999955542 44443 233 6999998876654
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.59 E-value=11 Score=36.58 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=32.9
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHh---hcCC--CCCCCCCCCCcch
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWL---KMRN--SCPVCRQELPAAA 247 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL---~~~~--sCP~CR~~l~~~~ 247 (351)
..|+|-+..|+. .++...|.|.=|.+ +..|| +... .||+|.+.+..++
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc--CCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 579988887764 47777899994433 33444 3333 6999999887654
No 135
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.51 E-value=15 Score=26.05 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=30.0
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+..++.+ +..-+..||..| .+|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC--------CcccccCCccCCC
Confidence 4799999998864432 233578999988 5688998887654
No 136
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.99 E-value=12 Score=26.49 Aligned_cols=41 Identities=27% Similarity=0.554 Sum_probs=30.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|..|.+.+..++. .+..-+..||..| .+|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCcc-EEEECccccCccc--------CeECCCCCcCCCC
Confidence 479999999886433 2333578999988 5688998887653
No 137
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.76 E-value=25 Score=25.11 Aligned_cols=42 Identities=29% Similarity=0.684 Sum_probs=30.6
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+..++.+ +..-+..||..| .+|-.|...|...
T Consensus 11 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI-VNSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTC-EEETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceE-EEeCccEecccc--------CeECCCCCCCCCC
Confidence 35799999998754433 223578999988 5688998887654
No 138
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.71 E-value=16 Score=25.89 Aligned_cols=39 Identities=23% Similarity=0.569 Sum_probs=28.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
..|+.|.+.+...+. .+..=+..||..| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGA-GVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSC-CEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCce-EEEECCCeEcccC--------CcccccCCcCC
Confidence 479999988775332 2334578999988 56889988884
No 139
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.37 E-value=11 Score=32.16 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=31.3
Q ss_pred CcccccccccccccCCcce-e-eccCceechhhHHHHhhcCC--CCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAR-E-MPCKHIYHEDCILPWLKMRN--SCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~-~-lpC~H~FH~~CI~~WL~~~~--sCP~CR~ 241 (351)
.+..|++|...|..-.... . ..|+|.+|..|= .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4678999999876433222 2 239999999997 3554333 4888855
No 140
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.00 E-value=6.3 Score=35.84 Aligned_cols=44 Identities=27% Similarity=0.663 Sum_probs=25.5
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHhhc-----CCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM-----RNSCPVCRQ 241 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~-----~~sCP~CR~ 241 (351)
..|.||...=.. ....... |...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888764222 2233333 9999999999965532 226999965
No 141
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.66 E-value=17 Score=26.23 Aligned_cols=41 Identities=17% Similarity=0.390 Sum_probs=29.6
Q ss_pred cccccccccccc-CCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFEL-GNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~-g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. ++...+..-+..||.+| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCC
Confidence 479999998874 12223344678999998 579999888863
No 142
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.64 E-value=8.5 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=25.2
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
....|..|++.|.+... +.+.| .|+.-|--..
T Consensus 14 ~~~rC~~C~kk~gL~~~--egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQ--ELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CTTBCSSSCCBCCHHHH--HHHCC-SSSCCCCTTT
T ss_pred cCCcchhhCCeeccccc--CceEe-cCCCEehhcc
Confidence 47899999999988741 12799 9999998644
No 143
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.26 E-value=5.3 Score=29.30 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred CcccccccccccccCCcceeec-cCceechhhHHHHhh---cCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLK---MRNSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~---~~~sCP~CR~ 241 (351)
+...| ||..... ++..+... |..-||..|+.--.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9987655 33334433 999999999864322 2336888854
No 144
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.36 E-value=20 Score=26.20 Aligned_cols=40 Identities=25% Similarity=0.515 Sum_probs=29.6
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+. +..+ ..-+..||.+| .+|-.|...|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 357999999888 3332 34578899888 5799999888643
No 145
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.87 E-value=13 Score=27.12 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=29.8
Q ss_pred cccccccccccccCCcceeec-cCceechhhHHHHh----hcCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWL----KMRNSCPVCRQ 241 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL----~~~~sCP~CR~ 241 (351)
...| ||......++..+... |..-||..|+.--. ...-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3568 7988765544344444 99999999987532 22346998854
No 146
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.74 E-value=35 Score=26.59 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=35.3
Q ss_pred ccccccccccccCC--ccee--eccCceechhhHHHHhh-cCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGN--EARE--MPCKHIYHEDCILPWLK-MRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~--~~~~--lpC~H~FH~~CI~~WL~-~~~sCP~CR~~l~~ 245 (351)
..|.||-+++.... ++.+ .-|.--.|+.|.+-=.+ .+++||.|+..+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 58999999975432 1222 23888899999987654 56789999887653
No 147
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.31 E-value=20 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=29.5
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
...|+.|.+.+. ++ .+..-+..||..| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccC--------CccCCCCCCCCC
Confidence 357999999885 33 2344689999988 579999988864
No 148
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.04 E-value=4 Score=33.49 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=29.6
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHHHhhcCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLKMRNSCPVCRQ 241 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~~~~sCP~CR~ 241 (351)
..|..|...|..-..-... .|+.+||..|..........|-.|..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 5799999998752111122 39999999998877666667888844
No 149
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.45 E-value=24 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.2
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
...|+.|.+.+.. + .+..-+..||..| .+|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCc--------CeeCCCCCCCC
Confidence 3579999998874 2 3444678999999 46999988874
No 150
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=41.25 E-value=15 Score=29.38 Aligned_cols=38 Identities=21% Similarity=0.587 Sum_probs=27.8
Q ss_pred cccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
.|+.|.+.+...+.++ ..-++.||..| ..|-.|...|.
T Consensus 10 ~C~~C~~~I~~~e~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-RVKDKVYHLEC--------FKCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCC-CCSSCCCCTTT--------CBCTTTCCBCC
T ss_pred cccCCCCeecCCceEE-EECCccccccc--------CccccCCCCCC
Confidence 6999999887644332 22478899988 56888988884
No 151
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=40.32 E-value=25 Score=24.53 Aligned_cols=42 Identities=29% Similarity=0.716 Sum_probs=30.6
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+..++.+. ..=+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 357999999988655332 235678999984 688998887654
No 152
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=40.18 E-value=11 Score=27.58 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=30.3
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+..++. +..-+..||.+| ..|-.|...|...
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSS--------EECSSSCCEECSS
T ss_pred CcCcCcCccccCcee--EEeCCccccccc--------CccCCCCCCCCCC
Confidence 579999999876553 344678999988 4588998887654
No 153
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.60 E-value=6.9 Score=28.95 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=28.3
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHh---------hcCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWL---------KMRNSCPVCRQ 241 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL---------~~~~sCP~CR~ 241 (351)
..| ||...... ...+... |..-||..|+.--. ...-.||.|+.
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 456 89887652 2333333 99999999985322 13557999964
No 154
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.39 E-value=13 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=24.1
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
....|+.|++.|-+.. +.|. |+.-|.-.-
T Consensus 24 ~~nRC~~CrKkvgL~g-----f~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTG-----FDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGGC-----EECT-TSCEECSSS
T ss_pred cCCcChhhCCcccccC-----eecC-CCCEechhc
Confidence 4568999999998874 9999 999887654
No 155
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.78 E-value=22 Score=26.80 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.2
Q ss_pred cccccccccccccCCcceee-ccCceechhhHHHH
Q 045745 196 ECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPW 229 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~W 229 (351)
...|.+|...|..-..--.. .|+++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 35799999999863221222 39999999997664
No 156
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.54 E-value=27 Score=26.05 Aligned_cols=41 Identities=17% Similarity=0.522 Sum_probs=31.0
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+...+. +..-+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 3589999999876543 345678999998 4688998877654
No 157
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.77 E-value=18 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.507 Sum_probs=27.8
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+. +.. +..-+..||.+| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEECCceecccc--------CCccCCCCccCC
Confidence 46999999888 332 233578899888 568899888853
No 158
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=37.64 E-value=17 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=24.4
Q ss_pred ceecccCCceeecCcCCCCCccCCCCCCCceEeec
Q 045745 11 SFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQIE 45 (351)
Q Consensus 11 ~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi~ 45 (351)
.-+|..|...-.+.-. .-..+||.|++.=...+.
T Consensus 37 ~I~CnDC~~~s~v~~h-~lg~kC~~C~SyNTr~~~ 70 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFH-ILGMKCKICESYNTAQAG 70 (79)
T ss_dssp EEEESSSCCEEEEECC-TTCCCCTTTSCCCEEESC
T ss_pred EEECCCCCCCccCCce-eecccCcCCCCcCeEecC
Confidence 4689999998777542 112389999997776664
No 159
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.63 E-value=23 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=22.4
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHH
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILP 228 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~ 228 (351)
..|.+|...|..-..--.. .||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999999853211122 3999999999654
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.40 E-value=4.8 Score=31.91 Aligned_cols=43 Identities=30% Similarity=0.565 Sum_probs=26.6
Q ss_pred cccccccccccCCcceeec-cCceechhhHHHHhhc----CCCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKM----RNSCPVCRQ 241 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~----~~sCP~CR~ 241 (351)
.|.||...-.. +.+.... |...||..||.+=|.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765332 1222223 8999999999875542 225887754
No 161
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.03 E-value=4 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=32.0
Q ss_pred CCCCcccccccccc-cccCCcceeeccCceechhhHHHHh-hcCC---CCCCCCC
Q 045745 192 HVSSECHCAVCKEA-FELGNEAREMPCKHIYHEDCILPWL-KMRN---SCPVCRQ 241 (351)
Q Consensus 192 ~~~~~~~C~ICle~-~~~g~~~~~lpC~H~FH~~CI~~WL-~~~~---sCP~CR~ 241 (351)
+..+...|.||+.. |.+|---.-.-|+-.||..|-..|- +.+. .|-+||+
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34456789999984 6654332223388899999988774 3333 3766653
No 162
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.94 E-value=28 Score=25.32 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=28.9
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+. ++ .+..-+..||.+| .+|-.|...|...
T Consensus 16 ~~C~~C~~~I~-~~--~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GE--VVSALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SC--CEEETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cc--eEEECCceeCccC--------CccccCCCCCCCC
Confidence 47999999887 33 2334678999988 5689999888643
No 163
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.82 E-value=21 Score=29.12 Aligned_cols=33 Identities=18% Similarity=0.542 Sum_probs=23.4
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHHH
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILPW 229 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~W 229 (351)
..|.+|...|..-..-... .||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 5799999999853221222 39999999996654
No 164
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.49 E-value=23 Score=27.16 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=24.7
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHHHh
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWL 230 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL 230 (351)
..|.+|...|..-..-... .|+++||..|...++
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4799999999753222222 399999999987764
No 165
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=36.37 E-value=24 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=28.8
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+. ++ .+..-+..||..| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 47999999887 33 2344578999988 569999988864
No 166
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=35.95 E-value=24 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.669 Sum_probs=23.6
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHHH
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILPW 229 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~W 229 (351)
..|.+|...|..-..--.. .||++|+..|....
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 5799999999853211222 39999999997654
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.91 E-value=32 Score=24.11 Aligned_cols=38 Identities=24% Similarity=0.646 Sum_probs=28.5
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. +. +..-+..||.+| .+|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCC--------CccCCCCCcCCc
Confidence 479999998874 22 344678999988 568999888853
No 168
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.47 E-value=26 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=24.4
Q ss_pred cccccccccccccCCcceee-ccCceechhhHHHHh
Q 045745 196 ECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWL 230 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL 230 (351)
...|.+|...|..-..--.. .|+++||..|....+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 35799999999853211112 399999999976643
No 169
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.47 E-value=20 Score=31.77 Aligned_cols=35 Identities=17% Similarity=0.499 Sum_probs=24.5
Q ss_pred CcccccccccccccCCcceee-ccCceechhhHHHH
Q 045745 195 SECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPW 229 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~W 229 (351)
.+..|.+|...|..-..-... .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 347899999999753222222 29999999996654
No 170
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.40 E-value=36 Score=23.86 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=28.9
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|..|.+.+.. + .+..-+..||.+| .+|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-R--VIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-C--CEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEecc-e--EEEECcccccccC--------CEeCCCCCcCCCC
Confidence 579999998873 3 2334578999988 4788998887654
No 171
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.57 E-value=23 Score=30.45 Aligned_cols=43 Identities=16% Similarity=0.430 Sum_probs=28.4
Q ss_pred CcccccccccccccCCcceeec---cCceechhhHHHHhhc----------CCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREMP---CKHIYHEDCILPWLKM----------RNSCPVCRQ 241 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~lp---C~H~FH~~CI~~WL~~----------~~sCP~CR~ 241 (351)
.+..|.||-+- .++.... |...||..||..++.. .=.|=+|.-
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34567777753 2334433 8999999999998742 115888853
No 172
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.54 E-value=23 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=24.3
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
....|+.|.+.|.+.. -+.|- |+.-|--..
T Consensus 24 ~~~rC~~C~kkvgl~~----~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 24 IMKHCFLCGKKTGLAT----SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCBCSSSCCBCSSSS----CEECT-TCCEECTTT
T ss_pred cCccchhhCCeecccC----CeEcC-CCCEecccC
Confidence 4579999999998863 49995 999998654
No 173
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=34.32 E-value=30 Score=25.38 Aligned_cols=43 Identities=28% Similarity=0.622 Sum_probs=26.6
Q ss_pred cccccccccccccCCcceeec---cC-ceechhhHHHHhhc----CCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMP---CK-HIYHEDCILPWLKM----RNSCPVCRQEL 243 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp---C~-H~FH~~CI~~WL~~----~~sCP~CR~~l 243 (351)
...| ||..... ++ .+... |. ..||..||. |.. .-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3567 8988642 32 22222 65 689999997 432 22699997643
No 174
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=33.97 E-value=11 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=19.8
Q ss_pred ecccCCceeecCcCC--------------CCCccCCCCCC
Q 045745 13 WCYRCLRIVSSLSQF--------------DGDTTCPHCHG 38 (351)
Q Consensus 13 wCh~C~r~V~~~~~~--------------~~~~~CP~C~~ 38 (351)
.|+.|++.|++.... +=+++||.|..
T Consensus 10 ~C~~C~~~lrl~V~at~~~IR~lqqLLl~~L~lvCp~Ca~ 49 (52)
T 2b9d_A 10 SCAYCEKLVRLTVLADHSAIRQLEEMLLRSLNIVCPLCTL 49 (52)
T ss_dssp ECTTTCCEEEEEEEECHHHHHHHHHHHHHTCCCCCTTTTT
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcchhc
Confidence 599999999886421 34799999964
No 175
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.25 E-value=23 Score=28.40 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=23.0
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCceEe
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQ 43 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFvEE 43 (351)
.-|-|-.|--.+.-.. ..-..||.|.+..||+
T Consensus 66 ~p~~C~~CG~~F~~~~--~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEI--NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCCCCS--SCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeecccC--CCCCCCcCCCCCccCC
Confidence 4588999987762222 2458899999998885
No 176
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=33.05 E-value=14 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.836 Sum_probs=10.7
Q ss_pred eechhhHHHHhh
Q 045745 220 IYHEDCILPWLK 231 (351)
Q Consensus 220 ~FH~~CI~~WL~ 231 (351)
-||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 177
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.01 E-value=25 Score=28.30 Aligned_cols=38 Identities=21% Similarity=0.453 Sum_probs=29.2
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
..|+.|.+.+... .++..-+..||..| ..|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~--~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADR--FLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSS--SEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCc--EEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 5799999988743 23344688999999 57999998875
No 178
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.97 E-value=14 Score=29.38 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=10.7
Q ss_pred eechhhHHHHhh
Q 045745 220 IYHEDCILPWLK 231 (351)
Q Consensus 220 ~FH~~CI~~WL~ 231 (351)
-||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 179
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.96 E-value=28 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=22.2
Q ss_pred ccccccccccccCCcceee-ccCceechhhHHH
Q 045745 197 CHCAVCKEAFELGNEAREM-PCKHIYHEDCILP 228 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~ 228 (351)
..|.+|...|..-..--.. .|+.+||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 5799999999753211112 3999999999554
No 180
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.92 E-value=9.4 Score=28.14 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=15.6
Q ss_pred CceecccCCceeecCcCC-CCCccCCCC
Q 045745 10 ESFWCYRCLRIVSSLSQF-DGDTTCPHC 36 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~-~~~~~CP~C 36 (351)
..-||..|+.--.++=.. ++|+.|..|
T Consensus 7 e~pWC~ICneDAtlrC~gCdgDLYC~rC 34 (67)
T 2d8v_A 7 GLPWCCICNEDATLRCAGCDGDLYCARC 34 (67)
T ss_dssp CCSSCTTTCSCCCEEETTTTSEEECSSH
T ss_pred CCCeeEEeCCCCeEEecCCCCceehHHH
Confidence 567999999853322211 345555555
No 181
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.54 E-value=15 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=19.4
Q ss_pred ccccccccccccCCcceeeccCceechhhH
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCI 226 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI 226 (351)
..|+.|-...-..+.+ +-=+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeE--EECCeEecccCC
Confidence 4799998877654333 335788999884
No 182
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.53 E-value=23 Score=31.65 Aligned_cols=35 Identities=17% Similarity=0.518 Sum_probs=24.7
Q ss_pred CcccccccccccccCCcceee-ccCceechhhHHHH
Q 045745 195 SECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPW 229 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~W 229 (351)
.+..|.+|...|..-..-... .|+++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 346899999999853222222 39999999997654
No 183
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.41 E-value=9.3 Score=27.14 Aligned_cols=41 Identities=29% Similarity=0.662 Sum_probs=24.5
Q ss_pred cccccccccccccCCcceeec---cC-ceechhhHHHHhhc----CCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREMP---CK-HIYHEDCILPWLKM----RNSCPVCRQ 241 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp---C~-H~FH~~CI~~WL~~----~~sCP~CR~ 241 (351)
...| ||..... + ..+... |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 9988632 2 222222 55 689999998 432 226888854
No 184
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.13 E-value=42 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.528 Sum_probs=28.6
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. + .+..=+..||..| .+|-.|...|..
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQ-G--GVTYRDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCS-C--CEESSSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecC-c--EEEECCchhhhhh--------CCcccCCCcCCC
Confidence 479999998864 2 2345678999988 468999988853
No 185
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.70 E-value=45 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.548 Sum_probs=19.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
..|+.|.+.+..+..+ +..=+..||..| .+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 6 SGCVECRKPIGADSKE-VHYKNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CBCSSSCCBCCSSSCE-EEETTEEEETTT--------CCCSSSCCCTT
T ss_pred CcCcccCCcccCCceE-EEECccChhhcC--------CcccccCCCCC
Confidence 3566666665532211 122345666655 34556655553
No 186
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.42 E-value=19 Score=25.62 Aligned_cols=36 Identities=25% Similarity=0.549 Sum_probs=25.6
Q ss_pred ccccccccccccCCcceeec-----cCceechhhHHHHhhc
Q 045745 197 CHCAVCKEAFELGNEAREMP-----CKHIYHEDCILPWLKM 232 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-----C~H~FH~~CI~~WL~~ 232 (351)
..|+-|.-.++..+-...|. |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 47999988887655333332 7788999888888644
No 187
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.33 E-value=44 Score=23.83 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=29.1
Q ss_pred cccccccccccc-C-CcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFEL-G-NEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~-g-~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. | +...+..=+..||..| .+|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCC
Confidence 479999998874 1 1123334578999988 569999888854
No 188
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.97 E-value=38 Score=24.57 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=28.3
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+..++.+ +..=+..||..| ..|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE-LFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCB-CCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEE-EEeCCccccccC--------CeecCCCCccCC
Confidence 4799999988843322 222468899888 568899888764
No 189
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.85 E-value=18 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=21.9
Q ss_pred ceecccCCc-eeecCcCCCCCccCCCCCCCceEee
Q 045745 11 SFWCYRCLR-IVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 11 ~ywCh~C~r-~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
.+-|-.|.. .+.... ..++++|+.|+--|=|++
T Consensus 5 ~~~CP~C~~~~l~~d~-~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACESAELIYDP-ERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSCCCEEEET-TTTEEEESSSCCBCCCCC
T ss_pred cEeCcCCCCcceEEcC-CCCeEECcccCCcccccc
Confidence 477999976 443322 247899999987665544
No 190
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.54 E-value=22 Score=25.44 Aligned_cols=42 Identities=21% Similarity=0.501 Sum_probs=28.6
Q ss_pred ccccccccccccCCcceeec-cCceechhhHHHHhhcCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMRNSCPVC 239 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~~sCP~C 239 (351)
..|..|...|... ..-.-+ |++.|+.+|=.---+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998631 223345 99999999944433444479988
No 191
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=28.15 E-value=27 Score=25.88 Aligned_cols=20 Identities=35% Similarity=0.791 Sum_probs=15.5
Q ss_pred eecccCCceeecCcCCCCCccCCCCCC
Q 045745 12 FWCYRCLRIVSSLSQFDGDTTCPHCHG 38 (351)
Q Consensus 12 ywCh~C~r~V~~~~~~~~~~~CP~C~~ 38 (351)
-=|-.|.+.| . +-.||.|++
T Consensus 12 ~AC~~C~~~~---~----~~~CPnC~s 31 (69)
T 1ryq_A 12 KACRHCHYIT---S----EDRCPVCGS 31 (69)
T ss_dssp EEETTTCBEE---S----SSSCTTTCC
T ss_pred hhHHhCCccc---c----CCcCCCccC
Confidence 3589999966 2 578999995
No 192
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.84 E-value=38 Score=23.64 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=28.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. +. +..-+..||.+| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTT--------TBCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ce--EEECccccccCc--------CEECCCCCCCCC
Confidence 479999998863 32 334578999988 468999888863
No 193
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.76 E-value=9.6 Score=30.52 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=27.0
Q ss_pred cccccccccccCCcceeec-cCceechhhHHHHhhcC----CCCCCCCC
Q 045745 198 HCAVCKEAFELGNEAREMP-CKHIYHEDCILPWLKMR----NSCPVCRQ 241 (351)
Q Consensus 198 ~C~ICle~~~~g~~~~~lp-C~H~FH~~CI~~WL~~~----~sCP~CR~ 241 (351)
.|.||...-..+ .+..-. |...||..|+.+=|... =.||.|..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 588887753332 222333 99999999998744321 24877744
No 194
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.60 E-value=44 Score=23.22 Aligned_cols=40 Identities=23% Similarity=0.503 Sum_probs=29.3
Q ss_pred ccccccccccccCCcceeeccCceec--hhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYH--EDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH--~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+..++. .+..-+..|| .+| .+|-.|+..|..
T Consensus 3 ~~C~~C~~~I~~~~~-~v~a~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQ-RVTYNNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSC-EEEETTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCce-EEEECCCccCCCCCC--------EECCCCCCcCCC
Confidence 369999998886433 2333578999 988 578899888854
No 195
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.42 E-value=46 Score=24.05 Aligned_cols=38 Identities=26% Similarity=0.560 Sum_probs=28.5
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|+.|.+.+.. . .+..-+..||..| .+|-.|...|..
T Consensus 16 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILD-R--ILRAMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCS-C--CEEETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CccccCCCeecc-e--eEEECCccccHHh--------cCcccCCCccCC
Confidence 579999998873 2 3334678999988 569999888763
No 196
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.09 E-value=30 Score=27.39 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=16.4
Q ss_pred ecccCCceeecCcCCCCCccCCCCCCCceEee
Q 045745 13 WCYRCLRIVSSLSQFDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 13 wCh~C~r~V~~~~~~~~~~~CP~C~~GFvEEi 44 (351)
.|-.|++.+.... +...|..|+..|..+-
T Consensus 34 ~CP~Cq~eL~~~g---~~~hC~~C~~~f~~~a 62 (101)
T 2jne_A 34 HCPQCQHVLDQDN---GHARCRSCGEFIEMKA 62 (101)
T ss_dssp BCSSSCSBEEEET---TEEEETTTCCEEEEEE
T ss_pred cCccCCCcceecC---CEEECccccchhhccc
Confidence 5666666655432 2444666666665554
No 197
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=26.82 E-value=19 Score=27.41 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.1
Q ss_pred CCCccCCCCCCCceEeec
Q 045745 28 DGDTTCPHCHGGFIEQIE 45 (351)
Q Consensus 28 ~~~~~CP~C~~GFvEEi~ 45 (351)
+....||+|+--|+.+-.
T Consensus 51 ~g~~~CpYCg~~f~l~~~ 68 (80)
T 2jvm_A 51 TGFVECGYCDRRYIHESF 68 (80)
T ss_dssp TCEEECSSSSCEEEEHHH
T ss_pred CCeEECCCCCCEEEecCC
Confidence 578999999999987643
No 198
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.70 E-value=41 Score=24.07 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=27.1
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCC
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 244 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~ 244 (351)
..|+-|.+.+.. . .+..-+..||.+| .+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~--~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R--VLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C--CBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e--eEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 469999988764 2 2334678899888 56888988876
No 199
>2ewl_A Protein E7; HPV, oncoprotein, zinc binding, virus-viral protein COMP; NMR {Human papillomavirus} SCOP: g.91.1.1 PDB: 2f8b_A
Probab=26.68 E-value=10 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=18.4
Q ss_pred ecccCCceeecCcCC--------------CCCccCCCCC
Q 045745 13 WCYRCLRIVSSLSQF--------------DGDTTCPHCH 37 (351)
Q Consensus 13 wCh~C~r~V~~~~~~--------------~~~~~CP~C~ 37 (351)
.|+.|.+.|++.... +=+++||.|.
T Consensus 15 ~C~~C~~~lRl~V~at~~~IR~lqqLLl~~L~lvCp~Ca 53 (56)
T 2ewl_A 15 VCCKCDGRIELTVESSAEDLRTLQQLFLSTLSFVCPWCA 53 (56)
T ss_dssp EBTTTCCEEEEEEECCHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred ECCCCCCeEEEEEEeCchhHHHHHHHhhCCceEECcccc
Confidence 499999999886532 3368888874
No 200
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.26 E-value=14 Score=35.67 Aligned_cols=48 Identities=25% Similarity=0.435 Sum_probs=0.0
Q ss_pred cccccccccccccCCcceee-ccCceechhhHHHHhh-------cCCCCCCCCCCC
Q 045745 196 ECHCAVCKEAFELGNEAREM-PCKHIYHEDCILPWLK-------MRNSCPVCRQEL 243 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~l-pC~H~FH~~CI~~WL~-------~~~sCP~CR~~l 243 (351)
...|.+|...|..-..-... .|+++||..|...++. ....|-.|-..|
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35799999998753221222 3999999999987652 123577775544
No 201
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.01 E-value=44 Score=32.65 Aligned_cols=44 Identities=16% Similarity=0.426 Sum_probs=28.9
Q ss_pred CcccccccccccccCCcceee---ccCceechhhHHHHhhc----------CCCCCCCCCC
Q 045745 195 SECHCAVCKEAFELGNEAREM---PCKHIYHEDCILPWLKM----------RNSCPVCRQE 242 (351)
Q Consensus 195 ~~~~C~ICle~~~~g~~~~~l---pC~H~FH~~CI~~WL~~----------~~sCP~CR~~ 242 (351)
.+..|.||-+- .++... .|...||.+||..++.. .=.|=+|.-.
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34567777653 223333 49999999999999821 2269999654
No 202
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.71 E-value=23 Score=24.11 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=25.0
Q ss_pred CCceecccCCceeecCc-----C-CCCCccCCCCCCCceEee
Q 045745 9 TESFWCYRCLRIVSSLS-----Q-FDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~-----~-~~~~~~CP~C~~GFvEEi 44 (351)
...|-|..|.+...... . .+....|+.|+..|...-
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCc
Confidence 35799999998643211 1 134689999999998754
No 203
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.67 E-value=67 Score=20.75 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCceecccCCceeecC---------cC-CCCCccCCCCCCCce
Q 045745 9 TESFWCYRCLRIVSSL---------SQ-FDGDTTCPHCHGGFI 41 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~---------~~-~~~~~~CP~C~~GFv 41 (351)
...|-|-.|.+..... .. .+....|+.|+..|-
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4679999998765321 11 145689999999884
No 204
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=25.58 E-value=46 Score=28.46 Aligned_cols=41 Identities=20% Similarity=0.493 Sum_probs=30.9
Q ss_pred cccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 196 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
...|+.|.+.+..++.+. .=+..||.+| ..|-.|...|...
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSC--------FRCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTT--------CBCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhc--------CCccccCCCCCCC
Confidence 457999999887654443 4578999988 5789999888654
No 205
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.34 E-value=15 Score=22.42 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCcch
Q 045745 234 NSCPVCRQELPAAA 247 (351)
Q Consensus 234 ~sCP~CR~~l~~~~ 247 (351)
.+||+|+..++..+
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 36999998777654
No 206
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=25.21 E-value=61 Score=24.66 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=25.6
Q ss_pred CCCCcccccccccccccCC---cceeeccCceechhhHHHH
Q 045745 192 HVSSECHCAVCKEAFELGN---EAREMPCKHIYHEDCILPW 229 (351)
Q Consensus 192 ~~~~~~~C~ICle~~~~g~---~~~~lpC~H~FH~~CI~~W 229 (351)
.+.....|.+|.+...... ..+=+=|.-.+|.+|+...
T Consensus 34 Nl~~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 34 NLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCCCCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 4444578999999865322 1122228999999998875
No 207
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=25.10 E-value=34 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=12.9
Q ss_pred CCceecccCCceeecC
Q 045745 9 TESFWCYRCLRIVSSL 24 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~ 24 (351)
....|||.|+.+|...
T Consensus 73 ~~~vwcY~cd~~V~~p 88 (102)
T 2ida_A 73 EGWGWCYVDEVMFDLS 88 (102)
T ss_dssp SCEEEETTTTEEEECT
T ss_pred CCCEEEcCCCcEEECc
Confidence 4679999999998554
No 208
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=24.03 E-value=21 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=15.0
Q ss_pred CCCCccCCCCCCCceEee
Q 045745 27 FDGDTTCPHCHGGFIEQI 44 (351)
Q Consensus 27 ~~~~~~CP~C~~GFvEEi 44 (351)
.++...||+|+--|+.+=
T Consensus 45 ~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 45 STDEKICPYCSTLYRYDP 62 (87)
T ss_dssp TCCEECCTTTCCEEECCT
T ss_pred CCCeEECCCCCCEeEcCC
Confidence 368999999999998753
No 209
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.62 E-value=56 Score=25.69 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=27.9
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPA 245 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~ 245 (351)
..|..|...|... .-..-=+..||..|..+- ....|..|...|..
T Consensus 31 F~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 5677777776531 122234667777776542 34578888887765
No 210
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.23 E-value=30 Score=18.39 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=9.2
Q ss_pred ccCCCCCCCceE
Q 045745 31 TTCPHCHGGFIE 42 (351)
Q Consensus 31 ~~CP~C~~GFvE 42 (351)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 578899888853
No 211
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.22 E-value=41 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=24.7
Q ss_pred CCceecccCCceeecCc---------CCCCCccCCCCCCCceE
Q 045745 9 TESFWCYRCLRIVSSLS---------QFDGDTTCPHCHGGFIE 42 (351)
Q Consensus 9 ~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~GFvE 42 (351)
...|-|-.|.+...... ..+..+.|+.|+..|..
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 46799999998765432 11456899999998865
No 212
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.13 E-value=54 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCceecccCCceeecCc---------CCCCCccCCCCCCCceE
Q 045745 8 TTESFWCYRCLRIVSSLS---------QFDGDTTCPHCHGGFIE 42 (351)
Q Consensus 8 ~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~GFvE 42 (351)
....|-|-.|.+...... ..+....|+.|+..|..
T Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 47 (95)
T 2yt9_A 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR 47 (95)
T ss_dssp CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC
T ss_pred CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC
Confidence 346799999998775432 11345889999988864
No 213
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=62 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=28.8
Q ss_pred ccccccccccccCCcceeeccCceechhhHHHHhhcCCCCCCCCCCCCcc
Q 045745 197 CHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPAA 246 (351)
Q Consensus 197 ~~C~ICle~~~~g~~~~~lpC~H~FH~~CI~~WL~~~~sCP~CR~~l~~~ 246 (351)
..|+.|.+.+.. +. +..-+..||.+| .+|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY--LSAMDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SC--EEETTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecc-ee--EEECCCeEecCc--------CChhhCCCCCCCC
Confidence 479999998874 22 234578899988 5699999888653
No 214
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.54 E-value=16 Score=33.32 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred eecccCCceeecCcC-----CCCCccCCCCCCCce
Q 045745 12 FWCYRCLRIVSSLSQ-----FDGDTTCPHCHGGFI 41 (351)
Q Consensus 12 ywCh~C~r~V~~~~~-----~~~~~~CP~C~~GFv 41 (351)
--|..|...|.+... .+.-+.||+|+-=.|
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 469999998865321 246799999998655
No 215
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.75 E-value=54 Score=22.98 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=10.6
Q ss_pred CcccccccccccccC
Q 045745 195 SECHCAVCKEAFELG 209 (351)
Q Consensus 195 ~~~~C~ICle~~~~g 209 (351)
+-..|++|+..++..
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 345799998877653
No 216
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.64 E-value=27 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=21.2
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCce
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFI 41 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFv 41 (351)
..|-|-.|-....-+.. .+-..|++|+.-|.
T Consensus 26 ~~y~Cp~CG~~~v~r~a-tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG-TGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEEE-TTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceeccC-CCeEECCCCCCEec
Confidence 46889999885443321 46788999987554
No 217
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.39 E-value=66 Score=22.20 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=18.5
Q ss_pred CceecccCCceeecCcC--------------CCCCccCCCCCC
Q 045745 10 ESFWCYRCLRIVSSLSQ--------------FDGDTTCPHCHG 38 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~--------------~~~~~~CP~C~~ 38 (351)
..|-|-.|-=....... -.++.+||.|+-
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGA 44 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCC
Confidence 46888888865553220 034668999985
No 218
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=21.35 E-value=39 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.964 Sum_probs=12.1
Q ss_pred CccCCCCCCC-ceEeecc
Q 045745 30 DTTCPHCHGG-FIEQIET 46 (351)
Q Consensus 30 ~~~CP~C~~G-FvEEi~~ 46 (351)
..+||.|+++ +++...+
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~ 19 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKD 19 (78)
T ss_dssp -CBCTTTSSSBEEEEEEE
T ss_pred ceECCCCCCCeeEeEEEE
Confidence 4789999987 6666543
No 219
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=20.98 E-value=43 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.625 Sum_probs=21.1
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCCCce
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHGGFI 41 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~GFv 41 (351)
--|+|+.|..+......+.....||+|++.+.
T Consensus 243 ~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 243 YIQYCFNCMNREVVTDLYKFKEKCPHCGSKFH 274 (392)
T ss_dssp EEEECTTTCCEEEECCGGGCCSBCTTTCSBCE
T ss_pred eEEECCCCCCeEeecCCCCCCCcCCCCCCccc
Confidence 45899999877543321124678999987443
No 220
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.52 E-value=33 Score=18.36 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.4
Q ss_pred ccCCCCCCCceE
Q 045745 31 TTCPHCHGGFIE 42 (351)
Q Consensus 31 ~~CP~C~~GFvE 42 (351)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 578899888864
No 221
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=20.52 E-value=32 Score=28.37 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=11.9
Q ss_pred CCceecccCCceee
Q 045745 9 TESFWCYRCLRIVS 22 (351)
Q Consensus 9 ~~~ywCh~C~r~V~ 22 (351)
....|||.|+-+|.
T Consensus 93 ~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 93 GADVYSYDEDDMVL 106 (129)
T ss_dssp BCCEEETTTTEEEE
T ss_pred CCeEEECCCCCEeE
Confidence 36899999999885
No 222
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.41 E-value=98 Score=23.48 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCceecccCCceeecCc--------------CCCCCccCCCCCC
Q 045745 8 TTESFWCYRCLRIVSSLS--------------QFDGDTTCPHCHG 38 (351)
Q Consensus 8 ~~~~ywCh~C~r~V~~~~--------------~~~~~~~CP~C~~ 38 (351)
.+..|-|-.|-=.+.... .-.++.+||.|+-
T Consensus 24 em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred CcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 356899999997776532 0135679999996
No 223
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.39 E-value=46 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCCceecccCCceeecCc---------CCCCCccCCCCCCCceE
Q 045745 8 TTESFWCYRCLRIVSSLS---------QFDGDTTCPHCHGGFIE 42 (351)
Q Consensus 8 ~~~~ywCh~C~r~V~~~~---------~~~~~~~CP~C~~GFvE 42 (351)
....|-|..|.+...... ..+....|+.|+..|..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 346789999988764321 11345789999988864
No 224
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.24 E-value=42 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=19.3
Q ss_pred CceecccCCceeecCcCCCCCccCCCCC
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCH 37 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~ 37 (351)
..-||..|...+.-... ..+.|..|.
T Consensus 22 ~pt~C~~C~~~l~Gl~~--qg~~C~~C~ 47 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLAR--QGLKCDACG 47 (65)
T ss_dssp SCCBCSSSCCBCCCSSS--CSEEESSSC
T ss_pred CCcCchhcChhheecCC--cccccCCCC
Confidence 44699999998864332 578999885
No 225
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.21 E-value=93 Score=22.40 Aligned_cols=34 Identities=24% Similarity=0.640 Sum_probs=28.1
Q ss_pred cccccccccccccCCcceeec-cCceech-hhHHHH
Q 045745 196 ECHCAVCKEAFELGNEAREMP-CKHIYHE-DCILPW 229 (351)
Q Consensus 196 ~~~C~ICle~~~~g~~~~~lp-C~H~FH~-~CI~~W 229 (351)
...|+-|..++..|+.+..-- .-|.||. .||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 358999999999999877766 8899984 688775
No 226
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.19 E-value=45 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=20.4
Q ss_pred CceecccCCceeecCcCCCCCccCCCCCC
Q 045745 10 ESFWCYRCLRIVSSLSQFDGDTTCPHCHG 38 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~~~~~~~~CP~C~~ 38 (351)
..-||..|..++.-.. ...+.|..|.-
T Consensus 33 ~pt~C~~C~~~lwGl~--kqG~~C~~C~~ 59 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLN--KQGYQCRQCNA 59 (77)
T ss_dssp SCEECSSSCCEECCTT--CCEEECSSSCC
T ss_pred CCcCccccChhhcccc--ccccCcCCCCC
Confidence 4579999999987433 25799999953
No 227
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.13 E-value=85 Score=21.87 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=20.0
Q ss_pred CceecccCCceeecCc--------------CCCCCccCCCCCC
Q 045745 10 ESFWCYRCLRIVSSLS--------------QFDGDTTCPHCHG 38 (351)
Q Consensus 10 ~~ywCh~C~r~V~~~~--------------~~~~~~~CP~C~~ 38 (351)
..|-|-.|--...... .-.++.+||.|+-
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 4688999987766532 0035679999986
Done!