BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045750
(792 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 177/721 (24%), Positives = 306/721 (42%), Gaps = 100/721 (13%)
Query: 3 ALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDI 62
A+V+I+ C +YQE SSK V V R ++ ++ +VV GD+
Sbjct: 113 AVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKM-------SINAEEVVVGDL 165
Query: 63 VIFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMXX 122
V + GD P D+R++++ V SSLTGES ++ D ++ L+ +NI F
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNEN---PLETRNIAFFST 222
Query: 123 XXXXXXXXXXXXXX---XXXXYTSTMFSTI-GKQKP-PDDFEKGVRRISFVLICVMLIVA 177
+T+ S + G Q P + E + I+ V + + +
Sbjct: 223 NCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFF 282
Query: 178 TIIILIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGA 237
+ ++++Y E+++F I + A P+ V L A MAR C+VK+L A
Sbjct: 283 ILSLILEY----TWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEA 338
Query: 238 IRDMGTMDILCIDKTGTLTMDRAIMVNHL---------------DSWGFPKENVL----- 277
+ +G+ +C DKTGTLT +R + V H+ F K +
Sbjct: 339 VETLGSTSTICSDKTGTLTQNR-MTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 278 RFAFLNS---YYKTDQKYPL----------DDAILAYVY--TNGYRFQASKWKKLDEIPF 322
R A L + + + P+ + A+L + + ++ K+ EIPF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 323 DFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVEHMDSGPITSFTSEE 382
+ + I + + E R ++ KGA E ++ CS + + G E
Sbjct: 458 NSTNKYQLSIHKNPNTAEPR------HLLVMKGAPERILDRCSSI--LIHGKEQPLDEEL 509
Query: 383 QKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDG-----PIESDMVFLGLITFYD 437
+ RV+G L ++ + + D P++ ++ F+GLI+ D
Sbjct: 510 KDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD-NLCFVGLISMID 568
Query: 438 PPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVST------------- 484
PP+ + A+ + G+K ++TGD A I VGI + T
Sbjct: 569 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVS 628
Query: 485 -------------GPDLELLSQESFHERVKRAT--VLARLTPTQKLRVVQSLQSVGKHVV 529
G DL+ ++ E + +K T V AR +P QKL +V+ Q G +V
Sbjct: 629 QVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IV 687
Query: 530 GFLGDGINDSLALDAANVGISVD-SGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNT 588
GDG+NDS A A++G+++ +G+ V+K AD+ILL+ + +V GVE GR+ F N
Sbjct: 688 AVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNL 747
Query: 589 MKYIKMSIIANLGGVLSLLIATMFLQTDPLTPKQLLTQNFLYS-VGQIAIPWDKMEGDYV 647
K I ++ +N+ + LI + PL +L + V I++ +++ E D +
Sbjct: 748 KKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIM 807
Query: 648 K 648
K
Sbjct: 808 K 808
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 176/721 (24%), Positives = 305/721 (42%), Gaps = 100/721 (13%)
Query: 3 ALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDI 62
A+V+I+ C +YQE SSK V V R ++ ++ +VV GD+
Sbjct: 107 AVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKM-------SINAEEVVVGDL 159
Query: 63 VIFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMXX 122
V + GD P D+R++++ V SSLTGES ++ D ++ L+ +NI F
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNEN---PLETRNIAFFST 216
Query: 123 XXXXXXXXXXXXXX---XXXXYTSTMFSTI-GKQKP-PDDFEKGVRRISFVLICVMLIVA 177
+T+ S + G Q P + E + I+ V + + +
Sbjct: 217 NCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFF 276
Query: 178 TIIILIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGA 237
+ ++++Y E+++F I + A P+ V L A MAR C+VK+L A
Sbjct: 277 ILSLILEY----TWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEA 332
Query: 238 IRDMGTMDILCIDKTGTLTMDRAIMVNHL---------------DSWGFPKENVL----- 277
+ +G+ +C KTGTLT +R + V H+ F K +
Sbjct: 333 VETLGSTSTICSXKTGTLTQNR-MTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 278 RFAFLNS---YYKTDQKYPL----------DDAILAYVY--TNGYRFQASKWKKLDEIPF 322
R A L + + + P+ + A+L + + ++ K+ EIPF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 323 DFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVEHMDSGPITSFTSEE 382
+ + I + + E R ++ KGA E ++ CS + + G E
Sbjct: 452 NSTNKYQLSIHKNPNTAEPR------HLLVMKGAPERILDRCSSI--LIHGKEQPLDEEL 503
Query: 383 QKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDG-----PIESDMVFLGLITFYD 437
+ RV+G L ++ + + D P++ ++ F+GLI+ D
Sbjct: 504 KDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD-NLCFVGLISMID 562
Query: 438 PPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVST------------- 484
PP+ + A+ + G+K ++TGD A I VGI + T
Sbjct: 563 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVS 622
Query: 485 -------------GPDLELLSQESFHERVKRAT--VLARLTPTQKLRVVQSLQSVGKHVV 529
G DL+ ++ E + +K T V AR +P QKL +V+ Q G +V
Sbjct: 623 QVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IV 681
Query: 530 GFLGDGINDSLALDAANVGISVD-SGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNT 588
GDG+NDS A A++G+++ +G+ V+K AD+ILL+ + +V GVE GR+ F N
Sbjct: 682 AVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNL 741
Query: 589 MKYIKMSIIANLGGVLSLLIATMFLQTDPLTPKQLLTQNFLYS-VGQIAIPWDKMEGDYV 647
K I ++ +N+ + LI + PL +L + V I++ +++ E D +
Sbjct: 742 KKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIM 801
Query: 648 K 648
K
Sbjct: 802 K 802
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 160/682 (23%), Positives = 286/682 (41%), Gaps = 99/682 (14%)
Query: 1 MLALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPG 60
++A+V+++ C +YQE+ S+ V V R + Q++ +V G
Sbjct: 146 LIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKF-------QINADQLVVG 198
Query: 61 DIVIFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICF- 119
D+V + GD P D+R+L ++ V SSLTGES ++ + H +PL + +NI F
Sbjct: 199 DLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPEC--THESPL-ETRNIAFF 255
Query: 120 --MXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGKQKPPDDFEKGVRRISFVLICVMLIVA 177
M +++ S + +K P E + ++ + ++
Sbjct: 256 STMCLEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPIAIE--IEHFVDIIAGLAILFG 313
Query: 178 TIIILIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGA 237
++ +++F +++ A P+ V L+ A +A CVVK+L A
Sbjct: 314 ATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEA 373
Query: 238 IRDMGTMDILCIDKTGTLTMDRAIMV-----NHLDSWGFPKEN----------------- 275
+ +G+ ++C DKTGTLT +R + NH+ S ++
Sbjct: 374 VETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCR 433
Query: 276 VLRFAFLNSYYKTDQKYPL----------DDAILAYVYTN-----GYRFQASKWKKLDEI 320
VL ++ P+ + A+L + GYR ++ K+ EI
Sbjct: 434 VLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYR---ERFPKVCEI 490
Query: 321 PFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVEHMDSGPITSFTS 380
PF+ + I E + R ++ KGA E V++ CS + + G
Sbjct: 491 PFNSTNKFQLSIHTLEDPRDPR------HVLVMKGAPERVLERCSSI--LIKGQELPLDE 542
Query: 381 EEQKRIXXXXXXXXXXXXRVIG-----VAVKRLLPQKSAQSNRNDGPIESDMVFLGLITF 435
+ ++ RV+G ++ K P + + P S + F GL++
Sbjct: 543 QWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPT-SGLSFAGLVSM 601
Query: 436 YDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL---LS 492
DPP+ + A+ + G++ ++TGD A I VGI + T D+ +
Sbjct: 602 IDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVP 661
Query: 493 QESFHERVKRATVL-------------------------ARLTPTQKLRVVQSLQSVGKH 527
+ + + RA V+ AR +P QKL +V+S Q +G
Sbjct: 662 VDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGA- 720
Query: 528 VVGFLGDGINDSLALDAANVGISVD-SGASVAKDLADIILLEKDLNVLVAGVERGRVTFG 586
+V GDG+NDS AL A++G+++ +G+ AK+ AD+ILL+ + +V GVE+GR+ F
Sbjct: 721 IVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFD 780
Query: 587 NTMKYIKMSIIANLGGVLSLLI 608
N K I ++ N+ + LI
Sbjct: 781 NLKKSIAYTLTKNIPELTPYLI 802
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 137/545 (25%), Positives = 250/545 (45%), Gaps = 57/545 (10%)
Query: 57 VVPGDIVIFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKN 116
+VPGDIV + GD+ P D RLL L V QS+LTGES K H + +
Sbjct: 148 LVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK-------HPGQEVFSGS 200
Query: 117 ICFMXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGKQKPPDDFEKGVRRISFVLICVMLIV 176
C + + +G F+K + I IC + I
Sbjct: 201 TCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGH------FQKVLTAIGNFCICSIAIG 254
Query: 177 ATIIILIDY-FTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSL 235
I I++ Y + + I + + P P +++ ++A G+ +++ + K +
Sbjct: 255 MVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 314
Query: 236 GAIRDMGTMDILCIDKTGTLTMDR-AIMVNHLDSW--GFPKENVLRFAFLNSYYKTDQKY 292
AI +M MD+LC DKTGTLT+++ ++ N ++ + G K+ VL FA + S + + +
Sbjct: 315 TAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMAS--RVENQD 372
Query: 293 PLDDAILAYVYTNGYRFQASKWKKLDEIPFDFVRRKVSVILETESITEDRSSQFSGRFVI 352
+D A++ + + + +++ +PF+ V ++ ++ S R +
Sbjct: 373 AIDAAMVGMLADP--KEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHR---------V 421
Query: 353 TKGALEEVIKVCSFVEHMDSGPITSFTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQK 412
+KGA E+++++ +++ K++ R + VA ++++P+K
Sbjct: 422 SKGAPEQILELAKA------------SNDLSKKVLSIIDKYAERGLRSLAVA-RQVVPEK 468
Query: 413 SAQSNRNDGPIESDMVFLGLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKIC 472
+ +S P E F+GL+ +DPP+ + + + R GV K++TGD L++ +
Sbjct: 469 TKESP--GAPWE----FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETG 522
Query: 473 HEVGIRTTH------VSTGPDLELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGK 526
+G+ T + T D L S E +++A A + P K +V+ LQ K
Sbjct: 523 RRLGMGTNMYPSSALLGTHKDANLASI-PVEELIEKADGFAGVFPEHKYEIVKKLQER-K 580
Query: 527 HVVGFLGDGINDSLALDAANVGISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFG 586
H+VG GDG+ND+ AL A++GI+V A+ +DI+L E L+V+++ V R F
Sbjct: 581 HIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQ 640
Query: 587 NTMKY 591
Y
Sbjct: 641 RMKNY 645
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 176/717 (24%), Positives = 294/717 (41%), Gaps = 94/717 (13%)
Query: 4 LVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDIV 63
+V+++ C +YQE SS+ V V R + ++ VV GD+V
Sbjct: 144 VVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKST-------INAEFVVAGDLV 196
Query: 64 IFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMXXX 123
+ GD P D+R++++ V SSLTGES ++ + ++ L+ +NI F
Sbjct: 197 EVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSEN---PLETRNIAFFSTN 253
Query: 124 XXXXXXXXXXXXX---XXXXYTSTMFSTIGKQKPPDDFEKGVRRISFVLICVMLIVATII 180
+T+ S + + P E + V L V+ I
Sbjct: 254 CVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFI 313
Query: 181 ILIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGAIRD 240
+ + + E+++F I + A P+ V L A MAR C+VK+L A+
Sbjct: 314 LSL--ILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVET 371
Query: 241 MGTMDILCIDKTGTLTMDRAIMVNHL---------------DSWGFPKENVL-----RFA 280
+G+ +C DKTGTLT +R + V H+ F K + R A
Sbjct: 372 LGSTSTICSDKTGTLTQNR-MTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIA 430
Query: 281 FLNS---YYKTDQKYPL----------DDAILAYVYTNGYRFQASKWK--KLDEIPFDFV 325
L + + P+ + A+L + Q + + K+ EIPF+
Sbjct: 431 ALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNST 490
Query: 326 RRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVEHMDSGPITSFTSEEQKR 385
+ I E E +E R ++ KGA E ++ CS + + +G + ++
Sbjct: 491 NKYQLSIHENEKSSESR------YLLVMKGAPERILDRCSTI--LLNGAEEPLKEDMKEA 542
Query: 386 IXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDGP----IESDMVFLGLITFYDPPKD 441
RV+G L K + D +D+ F+GL+ DPP+
Sbjct: 543 FQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRA 602
Query: 442 SAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVST----------------- 484
+ A+ + G+K ++TGD A I VGI + T
Sbjct: 603 AVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNP 662
Query: 485 ---------GPDLELLSQESFHERVKRAT--VLARLTPTQKLRVVQSLQSVGKHVVGFLG 533
G DL+ LS E + + T V AR +P QKL +V+ Q G +V G
Sbjct: 663 RDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTG 721
Query: 534 DGINDSLALDAANVGISVD-SGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYI 592
DG+NDS AL A++G+++ SG+ V+K AD+ILL+ + +V GVE GR+ F N K I
Sbjct: 722 DGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSI 781
Query: 593 KMSIIANLGGVLSLLIATMFLQTDPLTPKQLLTQNFLYS-VGQIAIPWDKMEGDYVK 648
++ +N+ + L+ + PL +L + V I++ +++ E D +K
Sbjct: 782 AYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMK 838
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 172/741 (23%), Positives = 308/741 (41%), Gaps = 79/741 (10%)
Query: 3 ALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDI 62
L+L++ + F QE+ + +L K V++ + +++ +VVPGDI
Sbjct: 149 GLLLLNAVVGFVQEFQAGSIVDELK-------KTLALKAVVLRDGTLKEIEAPEVVPGDI 201
Query: 63 VIFEPGDLFPGDVRLLTS-KHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMX 121
+ E G + P D R++T L V QS+LTGES +K + + + + +
Sbjct: 202 LQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVVIT 261
Query: 122 XXXXXXXXXXXXXXXXXXXYTSTMFSTIGKQKPPDDFEKGVRRISFVLICVMLIVATIII 181
S F+ + + I +L+ +++ I+
Sbjct: 262 ATGDNTFVGRAAALVNAASGGSGHFTEV------------LNGIGTILLILVIFTLLIVW 309
Query: 182 LIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGAIRDM 241
+ ++ S + + + F +++ P P +V T++A GA +A+ + +V+ L AI +
Sbjct: 310 VSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESL 369
Query: 242 GTMDILCIDKTGTLTMDRAIMVNHLDSWGFPKENVLRFAFLNSYYKTDQKYPLDDAILAY 301
++ILC DKTGTLT ++ + + G E+++ A L + K +D A L
Sbjct: 370 AGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKS 429
Query: 302 V-YTNGYRFQASKWKKLDEIPFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEV 360
+ Y + SK+K L PFD V +KV ++E+ R KGA V
Sbjct: 430 LKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQ---------GERITCVKGAPLFV 480
Query: 361 IKVCSFVEHMDSGPITSFTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRND 420
+K + PI + K R +GVA K R +
Sbjct: 481 LKTVE-----EDHPIPEEVDQAYKN---KVAEFATRGFRSLGVARK-----------RGE 521
Query: 421 GPIESDMVFLGLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTT 480
G E LG++ DPP+ + + G+ K+LTGD++ +A + ++G+ T
Sbjct: 522 GSWE----ILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTN 577
Query: 481 HVSTGPDLEL----LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGI 536
+ + ++ V+ A A + P K VV+ LQ G ++V GDG+
Sbjct: 578 IYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRG-YLVAMTGDGV 636
Query: 537 NDSLALDAANVGISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYI--KM 594
ND+ +L A+ GI+V+ + A+ ADI+ L L ++ ++ R F Y+ ++
Sbjct: 637 NDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRI 696
Query: 595 SIIANLGGVLSLLIATMFLQTDPLTPKQLLTQNFLYSVGQIAIPWDKMEGDYVKTPQIWS 654
++ +L L L IA + L + ++ V +AI +D Y +TP W+
Sbjct: 697 ALSIHLEIFLGLWIAIL---NRSLNIELVVFIAIFADVATLAIAYDN--APYSQTPVKWN 751
Query: 655 ENGLP----MFILFNGPVCILCDVTALFFLWFYYEAYNQMNVVFFRS---AWFVEGLLMQ 707
LP M +L +L T + Y + N V F + F++ L +
Sbjct: 752 ---LPKLWGMSVLLG---VVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQISLTE 805
Query: 708 TLIIHLIRTEKIPFIQEVASW 728
+I + R PF + SW
Sbjct: 806 NWLIFITRANG-PFWSSIPSW 825
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 319 EIPFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVE-HMDSGPITS 377
E +F R + S+ + R++ + FV KGA E VI C++V P+T
Sbjct: 482 EFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEGVIDRCNYVRVGTTRVPMTG 539
Query: 378 FTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDG---PIESDMVFLGLIT 434
E+ + R + +A + P++ + E+D+ F+G++
Sbjct: 540 PVKEKILSVIKEWGTGRDTL-RCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVG 598
Query: 435 FYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGI--RTTHVS----TGPDL 488
DPP+ ++ G++ ++TGD+ AI IC +GI V+ TG +
Sbjct: 599 MLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREF 658
Query: 489 ELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVG 548
+ L E +RA AR+ P+ K ++V+ LQS + GDG+ND+ AL A +G
Sbjct: 659 DDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIG 717
Query: 549 ISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSIIANLGGVLSLLI 608
I++ SG +VAK ++++L + + + +VA VE GR + N ++I+ I +N+G V+ + +
Sbjct: 718 IAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 777
Query: 609 ATMFLQTDPLTPKQLLTQNFL 629
+ L P QLL N +
Sbjct: 778 TAALGLPEALIPVQLLWVNLV 798
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 126/284 (44%), Gaps = 42/284 (14%)
Query: 1 MLALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPG 60
+L +++ + + +QE + A L E+ KV R + VQ ++ RD+VPG
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQ-----RIKARDIVPG 148
Query: 61 DIVIFEPGDLFPGDVRLLT--SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNIC 118
DIV GD P D+R+L+ S L V QS LTGES + K + D D KN+
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 119 FMXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGK---------------QKPPDDFEKGVR 163
F T+ + + IGK Q+ D+F + +
Sbjct: 209 F-------SGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS 261
Query: 164 RISFVLICVMLIVATIIILIDYFTSKNLSESILFG--------ISVACALTPQMFPLIVN 215
++ LIC VA +I I +F S + G +++A A P+ P ++
Sbjct: 262 KV-ISLIC----VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVIT 316
Query: 216 TSLAKGALAMARDRCVVKSLGAIRDMGTMDILCIDKTGTLTMDR 259
T LA G MA+ +V+SL ++ +G ++C KTGTLT ++
Sbjct: 317 TCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQ 360
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 319 EIPFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVE-HMDSGPITS 377
E +F R + S+ + R++ + FV KGA E VI C++V P+T
Sbjct: 483 EFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEGVIDRCNYVRVGTTRVPMTG 540
Query: 378 FTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDG---PIESDMVFLGLIT 434
E+ + R + +A + P++ + E+D+ F+G++
Sbjct: 541 PVKEKILSVIKEWGTGRDTL-RCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVG 599
Query: 435 FYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGI--RTTHVS----TGPDL 488
DPP+ ++ G++ ++TGD+ AI IC +GI V+ TG +
Sbjct: 600 MLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREF 659
Query: 489 ELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVG 548
+ L E +RA AR+ P+ K ++V+ LQS + GDG+ND+ AL A +G
Sbjct: 660 DDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIG 718
Query: 549 ISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSIIANLGGVLSLLI 608
I++ SG +VAK ++++L + + + +VA VE GR + N ++I+ I +N+G V+ + +
Sbjct: 719 IAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 778
Query: 609 ATMFLQTDPLTPKQLLTQNFL 629
+ L P QLL N +
Sbjct: 779 TAALGLPEALIPVQLLWVNLV 799
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 42/284 (14%)
Query: 1 MLALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPG 60
+L +++ + + +QE + A L E+ KV R + VQ ++ RD+VPG
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQ-----RIKARDIVPG 149
Query: 61 DIVIFEPGDLFPGDVRLLT--SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNIC 118
DIV GD P D+R+L+ S L V QS LTGES + K + D D KN+
Sbjct: 150 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 209
Query: 119 FMXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGK---------------QKPPDDFEKGVR 163
F T+ + + IGK Q+ D+F + +
Sbjct: 210 F-------SGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS 262
Query: 164 RISFVLICVMLIVATIIILIDYFTSKNLSESILFG--------ISVACALTPQMFPLIVN 215
++ LIC VA +I I +F S + G +++A A P+ P ++
Sbjct: 263 KV-ISLIC----VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVIT 317
Query: 216 TSLAKGALAMARDRCVVKSLGAIRDMGTMDILCIDKTGTLTMDR 259
T LA G MA+ +V+SL ++ +G ++C DKTGTLT ++
Sbjct: 318 TCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 319 EIPFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVE-HMDSGPITS 377
E +F R + S+ + R++ + FV KGA E VI C++V P+T
Sbjct: 482 EFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV--KGAPEGVIDRCNYVRVGTTRVPMTG 539
Query: 378 FTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDG---PIESDMVFLGLIT 434
E+ + R + +A + P++ + E+D+ F+G++
Sbjct: 540 PVKEKILSVIKEWGTGRDTL-RCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVG 598
Query: 435 FYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGI--RTTHVS----TGPDL 488
DPP+ ++ G++ ++TGD+ AI IC +GI V+ TG +
Sbjct: 599 MLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREF 658
Query: 489 ELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVG 548
+ L E +RA AR+ P+ K ++V+ LQS + GDG+ND+ AL A +G
Sbjct: 659 DDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSY-DEITAMTGDGVNDAPALKKAEIG 717
Query: 549 ISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSIIANLGGVLSLLI 608
I++ SG +VAK ++++L + + + +VA VE GR + N ++I+ I +N+G V+ + +
Sbjct: 718 IAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFL 777
Query: 609 ATMFLQTDPLTPKQLLTQNFL 629
+ L P QLL N +
Sbjct: 778 TAALGLPEALIPVQLLWVNLV 798
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 127/284 (44%), Gaps = 42/284 (14%)
Query: 1 MLALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPG 60
+L +++ + + +QE + A L E+ KV R + VQ ++ RD+VPG
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQ-----RIKARDIVPG 148
Query: 61 DIVIFEPGDLFPGDVRLLT--SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNIC 118
DIV GD P D+R+L+ S L V QS LTGES + K + D D KN+
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 119 FMXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGK---------------QKPPDDFEKGVR 163
F T+ + + IGK Q+ D+F + +
Sbjct: 209 F-------SGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS 261
Query: 164 RISFVLICVMLIVATIIILIDYFTSKNLSESILFG--------ISVACALTPQMFPLIVN 215
++ LIC VA +I I +F S + G +++A A P+ P ++
Sbjct: 262 KV-ISLIC----VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVIT 316
Query: 216 TSLAKGALAMARDRCVVKSLGAIRDMGTMDILCIDKTGTLTMDR 259
T LA G MA+ +V+SL ++ +G ++C DKTGTLT ++
Sbjct: 317 TCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 14/299 (4%)
Query: 342 RSSQFSGRFVITKGALEEVIKVCSFVE-HMDSGPITSFTSEEQKRIXXXXXXXXXXXXRV 400
+S G + KGA E VI C++V P+T E+ + R
Sbjct: 502 KSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTL-RC 560
Query: 401 IGVAVKRLLPQKSAQSNRNDG----PIESDMVFLGLITFYDPPKDSAKQALWRLAKKGVK 456
+ +A R P K + +D E+D+ F+G++ DPP+ ++ G++
Sbjct: 561 LALAT-RDTPPKREEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIR 619
Query: 457 AKLLTGDSLSLAIKICHEVGI------RTTHVSTGPDLELLSQESFHERVKRATVLARLT 510
++TGD+ AI IC +GI TG + + L E +RA AR+
Sbjct: 620 VIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVE 679
Query: 511 PTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGISVDSGASVAKDLADIILLEKD 570
PT K ++V+ LQS + GDG+ND+ AL A +GI++ SG +VAK ++++L + +
Sbjct: 680 PTHKSKIVEYLQSF-DEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDN 738
Query: 571 LNVLVAGVERGRVTFGNTMKYIKMSIIANLGGVLSLLIATMFLQTDPLTPKQLLTQNFL 629
+ +VA VE GR + N ++I+ I +N+G V+ + + + L P QLL N +
Sbjct: 739 FSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLV 797
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 42/284 (14%)
Query: 1 MLALVLISVCLRFYQEYGSSKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPG 60
+L +++ + + +QE + A L E+ KV R + VQ ++ RD+VPG
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQ-----RIKARDIVPG 148
Query: 61 DIVIFEPGDLFPGDVRLLT--SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNIC 118
DIV GD P D+R+LT S L V QS LTGES + K + D D KN+
Sbjct: 149 DIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 119 FMXXXXXXXXXXXXXXXXXXXXYTSTMFSTIGK---------------QKPPDDFEKGVR 163
F T+ + + IGK Q+ D+F + +
Sbjct: 209 F-------SGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLS 261
Query: 164 RISFVLICVMLIVATIIILIDYFTSKNLSESILFG--------ISVACALTPQMFPLIVN 215
++ LIC VA +I I +F S + G +++A A P+ P ++
Sbjct: 262 KV-ISLIC----VAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVIT 316
Query: 216 TSLAKGALAMARDRCVVKSLGAIRDMGTMDILCIDKTGTLTMDR 259
T LA G MA+ +V+SL ++ +G ++C DKTGTLT ++
Sbjct: 317 TCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 261 IMVNHLDSWGFPKENVLRFAFLNSYYKTDQKYPLDDAILAYVYTNGYRFQASKWKKLDEI 320
++ NH D G E VL A+LNS+Y+T K LD A+L R AS+W+K+DEI
Sbjct: 3 VLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEI 62
Query: 321 PFDFVRRKVSVILETESITEDRSSQFSGRFVITKGALEEVIKVCSFVEHMDSGPITSFTS 380
PFDF RR++SV++ + ++ KGAL+E++ VCS V H +G I
Sbjct: 63 PFDFERRRMSVVV---------AENTEHHQLVCKGALQEILNVCSQVRH--NGEIVPLDD 111
Query: 381 EEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDGPIESDMVFLGLITFYD 437
++I RV+ VA K LP + R D ESD++ G I F D
Sbjct: 112 IMLRKIKRVTDTLNRQGLRVVAVATK-YLPAREGDYQRAD---ESDLILEGYIAFLD 164
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 27/170 (15%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D K+SAK A+ L + G+K ++TGD+ A I E+ + DL
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------DL-- 576
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+
Sbjct: 577 --------------VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIA 620
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSIIANL 600
V SG+ VA + DI+L+ DL +VA ++ R T + I ++I N+
Sbjct: 621 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 116/298 (38%), Gaps = 38/298 (12%)
Query: 20 SKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDIVIFEPGDLFPGDVRLLT 79
++A + E ++ + +Q V++ + V +V GDIVI PG+ P D ++
Sbjct: 192 ARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVD-GVVV 250
Query: 80 SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMXXXXXXXXXXXXXXXXXXX 139
V +S ++GE K+ T + N +
Sbjct: 251 EGESYVDESMISGEPVPVLKSKGDEVFGAT----INNTGVLKIRATRVG----------- 295
Query: 140 XYTSTMFSTIGK-------QKPPDDFEKGVRRISFVLICVMLIVATIIILIDYFTSKNLS 192
T+ + I K KPP ++ ++ I +L+VA + YF +
Sbjct: 296 --GETLLAQIVKLVEDAMGSKPP--IQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA-- 349
Query: 193 ESILFG----ISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGAIRDMGTMDILC 248
+LF I+V P F L T+L G A ++K+ A+ + +
Sbjct: 350 -PLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVI 408
Query: 249 IDKTGTLTMDRAIMVNHLDSWGFPKENVLRFAFLNSYYKTDQKYPLDDAILAYVYTNG 306
DKTGTLT + + + + G +E +LR A + + ++P+ +AI+ +G
Sbjct: 409 FDKTGTLTKGKPEVTDLVPLNGDERE-LLRLA---AIAERRSEHPIAEAIVKKALEHG 462
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 27/170 (15%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D K+SAK A+ L + G+K ++TGD+ A I E+ +L+L
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL-----------NLDL 498
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+
Sbjct: 499 --------------VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIA 542
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSIIANL 600
V SG+ VA + DI+L+ DL +VA ++ R T + I ++I N+
Sbjct: 543 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 116/298 (38%), Gaps = 38/298 (12%)
Query: 20 SKAAMKLSEFVRCPIKVQRCAGRVVQSELIVQVDQRDVVPGDIVIFEPGDLFPGDVRLLT 79
++A + E ++ + +Q V++ + V +V GDIVI PG+ P D ++
Sbjct: 114 ARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVD-GVVV 172
Query: 80 SKHLVVSQSSLTGESWTAEKTADIREDHCTPLLDLKNICFMXXXXXXXXXXXXXXXXXXX 139
V +S ++GE K+ T + N +
Sbjct: 173 EGESYVDESMISGEPVPVLKSKGDEVFGAT----INNTGVLKIRATRVG----------- 217
Query: 140 XYTSTMFSTIGK-------QKPPDDFEKGVRRISFVLICVMLIVATIIILIDYFTSKNLS 192
T+ + I K KPP ++ ++ I +L+VA + YF +
Sbjct: 218 --GETLLAQIVKLVEDAMGSKPP--IQRLADKVVAYFIPTVLLVAISAFIYWYFIAH--- 270
Query: 193 ESILFG----ISVACALTPQMFPLIVNTSLAKGALAMARDRCVVKSLGAIRDMGTMDILC 248
+LF I+V P F L T+L G A ++K+ A+ + +
Sbjct: 271 APLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVI 330
Query: 249 IDKTGTLTMDRAIMVNHLDSWGFPKENVLRFAFLNSYYKTDQKYPLDDAILAYVYTNG 306
DKTGTLT + + + + G +E +LR A + + ++P+ +AI+ +G
Sbjct: 331 FDKTGTLTKGKPEVTDLVPLNGDERE-LLRLA---AIAERRSEHPIAEAIVKKALEHG 384
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 31/163 (19%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D K+SAK A+ L + G+K ++TGD+ A I E+ + DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------DL-- 204
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+
Sbjct: 205 --------------VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIA 248
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIK 593
V SG+ VA + DI+L+ DL +VA ++ R TM IK
Sbjct: 249 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSR----KTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 31/163 (19%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D K+SAK A+ L + G+K ++TGD+ A I E+ + DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL---------DL-- 204
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+
Sbjct: 205 --------------VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIA 248
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIK 593
V SG+ VA + DI+L+ DL +VA ++ R TM IK
Sbjct: 249 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSR----KTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 81/154 (52%), Gaps = 27/154 (17%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D K+SAK A+ L + G+K +TGD+ A I E+ + DL
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL---------DL-- 184
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+
Sbjct: 185 --------------VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIA 228
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVT 584
V SG+ VA + DI+L+ DL +VA ++ R T
Sbjct: 229 VGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 262
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 30/167 (17%)
Query: 430 LGLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLE 489
+ L+ DP K S + + L + G++ +LTGDS A + +GI+
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK---------- 595
Query: 490 LLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGI 549
V+A + P K R+V L+ G +V GDG+ND+ AL A++GI
Sbjct: 596 ---------------VVAEIMPEDKSRIVSELKDKGL-IVAMAGDGVNDAPALAKADIGI 639
Query: 550 SVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTMKYIKMSI 596
++ +G VA + A + LL DL G+ + R +TM I+ ++
Sbjct: 640 AMGTGTDVAIESAGVTLLHGDLR----GIAKARRLSESTMSNIRQNL 682
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 167 FVLICVMLIVATIIILIDYFTSKNLSESILFGISVACALTPQMFPLIVNTSLAKGALAMA 226
FV +++ V + I+ LS ++ +SV P L S+ G A
Sbjct: 343 FVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGA 402
Query: 227 RDRCVVKSLGAIRDMGTMDILCIDKTGTLT 256
+ ++K+ A+ M ++ L +DKTGTLT
Sbjct: 403 QSGVLIKNAEALERMEKVNTLVVDKTGTLT 432
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D + +++A+ +L G+K +LTGD+ +A + E+G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
A + P +K V+ +Q K+V +GDG+ND+ AL A+VGI+
Sbjct: 185 -------------DYFAEVLPHEKAEKVKEVQQ--KYVTAMVGDGVNDAPALAQADVGIA 229
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTF 585
+ +G VA + ADI+L+ D + A VE R T+
Sbjct: 230 IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 27/155 (17%)
Query: 431 GLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLEL 490
G+I D + +++A+ +L G+K +LTGD+ +A + E+G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 491 LSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGIS 550
A + P +K V+ +Q K+V +GDG+ND+ AL A+VGI+
Sbjct: 185 -------------DYFAEVLPHEKAEKVKEVQQ--KYVTAMVGDGVNDAPALAQADVGIA 229
Query: 551 VDSGASVAKDLADIILLEKDLNVLVAGVERGRVTF 585
+ +G VA + ADI+L+ D + A VE R T+
Sbjct: 230 IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 35/140 (25%)
Query: 440 KDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLELLSQESFHER 499
K+SAK A+ L + G+K +TGD+ A I E+ + DL
Sbjct: 24 KESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL---------DL----------- 63
Query: 500 VKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGISVDSGASVAK 559
V+A + P QK V+ LQ+ K VV F+GDGIND+ AL A++GI+V SG
Sbjct: 64 -----VIAEVLPHQKSEEVKKLQA--KEVVAFVGDGINDAPALAQADLGIAVGSG----- 111
Query: 560 DLADIILLEKDLNVLVAGVE 579
DI+L+ DL +VA ++
Sbjct: 112 ---DIVLIRDDLRDVVAAIQ 128
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 62/264 (23%), Positives = 123/264 (46%), Gaps = 34/264 (12%)
Query: 332 ILETESITEDRSSQFS-GRFVITKGALEEV-IKVCSFVEHMDSGPITS----FTSEEQKR 385
I E ++I D++ + G ++T+ + + + + VE + S PI + E+ +
Sbjct: 25 IKEIDTIIFDKTGTLTYGTPIVTQFIGDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVK 84
Query: 386 IXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDGPIESDMVFLGLITFYDPPKDSAKQ 445
I V G +++ K A++N ND + + + D P+ + K
Sbjct: 85 ILEVKDFKEISGIGVRGKISDKIIEVKKAENN-NDIAVYINGEPIASFNISDVPRPNLKD 143
Query: 446 ALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHVSTGPDLELLSQESFHERVKRATV 505
L +L +G+K +L+GD ++ E+ I QE +
Sbjct: 144 YLEKLKNEGLKIIILSGDKEDKVKELSKELNI---------------QEYY--------- 179
Query: 506 LARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLALDAANVGISVDSGASVAKDLADII 565
+ L+P K+R+++ L+ G V+ +GDG+ND+ AL A+V +++ +G ++K++ADII
Sbjct: 180 -SNLSPEDKVRIIEKLKQNGNKVL-MIGDGVNDAAALALADVSVAMGNGVDISKNVADII 237
Query: 566 LLEKDLNVLVAGVERGRVTFGNTM 589
L+ D+ L+ G+ + R N +
Sbjct: 238 LVSNDIGTLL-GLIKNRKRLSNAI 260
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 32/227 (14%)
Query: 367 VEHMDSGPITS----FTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDGP 422
VE + S PI + E+ +I V G +++ K A++N ND
Sbjct: 62 VEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVKKAENN-NDIA 120
Query: 423 IESDMVFLGLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHV 482
+ + + D P+ + K L +L +G+K +L+GD ++ E+ I
Sbjct: 121 VYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI----- 175
Query: 483 STGPDLELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLAL 542
QE + + L+P K+R+++ L+ G V+ +GDG+ND+ AL
Sbjct: 176 ----------QEYY----------SNLSPEDKVRIIEKLKQNGNKVL-MIGDGVNDAAAL 214
Query: 543 DAANVGISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTM 589
A+V +++ +G ++K++ADIIL+ D+ L+ G+ + R N +
Sbjct: 215 ALADVSVAMGNGVDISKNVADIILVSNDIGTLL-GLIKNRKRLSNAI 260
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 105/227 (46%), Gaps = 32/227 (14%)
Query: 367 VEHMDSGPITS----FTSEEQKRIXXXXXXXXXXXXRVIGVAVKRLLPQKSAQSNRNDGP 422
VE + S PI + E+ +I V G +++ K A++N ND
Sbjct: 62 VEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKISDKIIEVKKAENN-NDIA 120
Query: 423 IESDMVFLGLITFYDPPKDSAKQALWRLAKKGVKAKLLTGDSLSLAIKICHEVGIRTTHV 482
+ + + D P+ + K L +L +G+K +L+GD ++ E+ I
Sbjct: 121 VYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI----- 175
Query: 483 STGPDLELLSQESFHERVKRATVLARLTPTQKLRVVQSLQSVGKHVVGFLGDGINDSLAL 542
QE + + L+P K+R+++ L+ G V+ +GDG+ND+ AL
Sbjct: 176 ----------QEYY----------SNLSPEDKVRIIEKLKQNGNKVL-MIGDGVNDAAAL 214
Query: 543 DAANVGISVDSGASVAKDLADIILLEKDLNVLVAGVERGRVTFGNTM 589
A+V +++ +G ++K++ADIIL+ D+ L+ G+ + R N +
Sbjct: 215 ALADVSVAMGNGVDISKNVADIILVSNDIGTLL-GLIKNRKRLSNAI 260
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 51 QVDQRDVVPGDIVIFEPGDLFPGDVRLLTSKHLVVSQSSLTGESWTAEK 99
QVD V GDI+ PG FP D R++ H +V +S +TGE+ K
Sbjct: 36 QVDVELVQRGDIIKVVPGGKFPVDGRVIEG-HSMVDESLITGEAMPVAK 83
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 521 LQSVG--KHVVGFLGDGINDSLALDAANVGISVDSGASVAKDLADIILLEKDLNVLVAGV 578
L+++G + V +GDG ND + A +G+++ + K AD I L D + + +
Sbjct: 206 LENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAI 265
Query: 579 ER 580
ER
Sbjct: 266 ER 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,172,634
Number of Sequences: 62578
Number of extensions: 763831
Number of successful extensions: 2084
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 69
length of query: 792
length of database: 14,973,337
effective HSP length: 107
effective length of query: 685
effective length of database: 8,277,491
effective search space: 5670081335
effective search space used: 5670081335
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)