Query 045751
Match_columns 492
No_of_seqs 370 out of 4241
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-42 6.6E-47 364.5 18.7 400 3-417 341-828 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-37 1.9E-41 339.5 25.9 439 3-467 374-904 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.4E-28 5.2E-33 271.5 20.1 318 139-467 69-439 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.2E-28 4.8E-33 271.8 17.2 297 160-466 139-462 (968)
5 KOG0444 Cytoskeletal regulator 99.9 8.5E-30 1.8E-34 246.6 -5.5 315 138-467 54-373 (1255)
6 KOG4194 Membrane glycoprotein 99.9 6.8E-26 1.5E-30 218.2 3.7 299 160-467 77-427 (873)
7 KOG4194 Membrane glycoprotein 99.9 2.1E-26 4.6E-31 221.7 -0.9 316 137-465 123-448 (873)
8 KOG0444 Cytoskeletal regulator 99.9 3.4E-27 7.4E-32 228.6 -8.3 311 138-467 31-350 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 4.2E-25 9.1E-30 204.0 -7.4 181 149-340 101-284 (565)
10 PLN03210 Resistant to P. syrin 99.9 4.7E-21 1E-25 214.0 14.9 289 160-467 531-836 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.4E-22 3.1E-27 187.4 -7.8 263 160-467 44-308 (565)
12 KOG0618 Serine/threonine phosp 99.8 8.6E-22 1.9E-26 199.6 -8.3 313 140-467 46-487 (1081)
13 KOG0618 Serine/threonine phosp 99.7 3E-20 6.6E-25 188.5 -4.8 315 137-464 66-508 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 6.5E-16 1.4E-20 161.5 12.7 233 190-467 223-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 6.4E-16 1.4E-20 161.5 11.4 262 141-452 203-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 2E-15 4.3E-20 158.8 9.1 243 189-467 178-426 (754)
17 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.3E-22 135.4 -5.5 148 187-339 31-181 (264)
18 KOG0617 Ras suppressor protein 99.6 5E-17 1.1E-21 134.0 -5.7 159 160-329 32-194 (264)
19 PRK15370 E3 ubiquitin-protein 99.5 1E-14 2.2E-19 153.4 8.8 223 190-445 200-428 (754)
20 KOG4237 Extracellular matrix p 99.5 6.5E-16 1.4E-20 143.4 -0.4 270 158-445 64-359 (498)
21 KOG4237 Extracellular matrix p 99.5 2.9E-16 6.2E-21 145.7 -3.3 271 190-467 68-357 (498)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-15 4.8E-20 146.4 2.3 274 166-467 3-318 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 8.5E-15 1.9E-19 142.3 3.4 259 160-443 22-318 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.4 1.2E-12 2.5E-17 140.2 8.0 201 160-373 522-731 (889)
25 KOG1909 Ran GTPase-activating 99.3 3.5E-13 7.6E-18 123.8 0.2 253 180-444 21-310 (382)
26 KOG3207 Beta-tubulin folding c 99.3 3.2E-12 6.9E-17 120.7 3.7 242 204-473 113-371 (505)
27 KOG4341 F-box protein containi 99.2 4.1E-12 8.9E-17 119.4 -0.8 290 161-476 138-446 (483)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.6E-15 100.6 5.2 129 187-339 17-148 (175)
29 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.8E-17 123.4 -4.1 171 162-371 76-246 (722)
30 COG4886 Leucine-rich repeat (L 99.0 5.9E-10 1.3E-14 111.6 7.0 194 165-397 97-291 (394)
31 KOG1909 Ran GTPase-activating 99.0 6.9E-11 1.5E-15 108.9 -0.1 238 160-418 29-308 (382)
32 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5.1E-15 103.2 1.7 202 160-419 181-410 (490)
33 PF14580 LRR_9: Leucine-rich r 98.9 5.1E-10 1.1E-14 96.6 3.7 106 160-272 18-126 (175)
34 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 109.8 -1.2 206 160-396 120-339 (505)
35 KOG2120 SCF ubiquitin ligase, 98.9 5.7E-11 1.2E-15 107.0 -5.3 182 237-443 186-374 (419)
36 KOG0532 Leucine-rich repeat (L 98.8 2.9E-10 6.3E-15 111.0 -3.1 171 145-328 81-254 (722)
37 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.7E-14 105.3 4.5 148 160-315 115-265 (394)
38 PF13855 LRR_8: Leucine rich r 98.7 9E-09 1.9E-13 73.0 3.5 59 189-247 1-60 (61)
39 KOG2120 SCF ubiquitin ligase, 98.7 3E-10 6.6E-15 102.4 -5.2 161 301-469 206-376 (419)
40 PF00931 NB-ARC: NB-ARC domain 98.7 5.7E-09 1.2E-13 99.7 1.6 68 4-72 182-283 (287)
41 KOG4341 F-box protein containi 98.7 2.6E-09 5.7E-14 100.8 -1.2 299 139-464 138-460 (483)
42 PF13855 LRR_8: Leucine rich r 98.7 8.2E-09 1.8E-13 73.2 1.5 60 212-271 1-61 (61)
43 KOG1259 Nischarin, modulator o 98.6 5.8E-09 1.3E-13 94.4 0.4 104 160-271 306-411 (490)
44 PLN03150 hypothetical protein; 98.6 7.4E-08 1.6E-12 101.4 8.0 90 191-281 420-512 (623)
45 COG5238 RNA1 Ran GTPase-activa 98.6 1.3E-08 2.8E-13 90.9 -0.0 249 186-445 27-316 (388)
46 KOG2982 Uncharacterized conser 98.5 9.7E-08 2.1E-12 86.5 3.5 87 184-270 66-157 (418)
47 PLN03150 hypothetical protein; 98.5 3.4E-07 7.3E-12 96.4 8.1 106 162-272 419-528 (623)
48 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.3E-13 99.7 -2.4 87 183-272 89-175 (414)
49 KOG0531 Protein phosphatase 1, 98.3 4.1E-08 8.9E-13 98.6 -2.3 243 186-446 69-319 (414)
50 KOG2982 Uncharacterized conser 98.3 6.1E-07 1.3E-11 81.4 3.8 83 382-465 198-288 (418)
51 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.5E-11 55.8 3.4 38 213-251 2-39 (44)
52 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6E-11 55.2 3.1 41 189-229 1-41 (44)
53 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.4E-11 91.3 2.3 108 160-272 147-263 (699)
54 KOG1859 Leucine-rich repeat pr 98.0 5.6E-07 1.2E-11 90.9 -2.5 196 160-396 83-292 (1096)
55 KOG3665 ZYG-1-like serine/thre 98.0 4.7E-06 1E-10 87.8 3.7 129 160-292 121-259 (699)
56 KOG1859 Leucine-rich repeat pr 98.0 2.9E-07 6.3E-12 92.9 -5.2 86 183-271 181-266 (1096)
57 COG5238 RNA1 Ran GTPase-activa 97.9 5.7E-06 1.2E-10 74.4 2.5 112 160-271 29-169 (388)
58 KOG4579 Leucine-rich repeat (L 97.9 5.5E-06 1.2E-10 66.7 1.8 88 183-271 47-135 (177)
59 PRK15386 type III secretion pr 97.9 1.9E-05 4E-10 76.9 5.6 158 183-369 46-210 (426)
60 KOG4579 Leucine-rich repeat (L 97.7 8.6E-06 1.9E-10 65.7 0.6 108 161-273 53-160 (177)
61 KOG1947 Leucine rich repeat pr 97.7 9.3E-06 2E-10 83.6 1.0 243 181-467 180-438 (482)
62 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.9E-09 63.0 5.1 82 189-271 42-125 (233)
63 PRK15386 type III secretion pr 97.5 0.00048 1E-08 67.3 8.8 75 301-393 48-122 (426)
64 KOG1644 U2-associated snRNP A' 97.1 0.00048 1E-08 59.6 3.5 102 160-268 41-149 (233)
65 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.6E-09 75.3 -3.0 38 436-473 380-418 (482)
66 KOG2123 Uncharacterized conser 96.7 0.00026 5.6E-09 64.2 -1.2 98 160-265 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.5E-08 59.7 2.2 84 186-271 40-128 (260)
68 PF13306 LRR_5: Leucine rich r 96.6 0.0026 5.6E-08 52.4 4.0 81 183-266 6-88 (129)
69 KOG2123 Uncharacterized conser 96.6 0.00052 1.1E-08 62.3 -0.3 84 188-274 18-103 (388)
70 PF13306 LRR_5: Leucine rich r 96.5 0.0083 1.8E-07 49.3 6.5 97 140-245 13-112 (129)
71 KOG2739 Leucine-rich acidic nu 96.1 0.0026 5.6E-08 57.5 1.8 105 359-467 43-154 (260)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0053 1.2E-07 33.0 0.9 19 191-209 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0049 1.1E-07 33.2 0.5 17 214-230 2-18 (22)
74 KOG3864 Uncharacterized conser 95.1 0.0014 3E-08 56.9 -3.8 85 360-444 102-188 (221)
75 KOG0473 Leucine-rich repeat pr 94.9 0.001 2.2E-08 58.9 -5.2 91 180-271 33-123 (326)
76 PF13504 LRR_7: Leucine rich r 94.1 0.03 6.4E-07 27.9 1.1 13 214-226 3-15 (17)
77 PF13504 LRR_7: Leucine rich r 93.7 0.042 9.2E-07 27.4 1.3 15 237-251 2-16 (17)
78 KOG3864 Uncharacterized conser 93.5 0.006 1.3E-07 53.0 -3.2 82 385-467 103-187 (221)
79 smart00369 LRR_TYP Leucine-ric 93.5 0.067 1.5E-06 30.0 2.1 20 212-231 2-21 (26)
80 smart00370 LRR Leucine-rich re 93.5 0.067 1.5E-06 30.0 2.1 20 212-231 2-21 (26)
81 KOG4308 LRR-containing protein 92.0 0.0043 9.3E-08 62.9 -7.3 109 163-272 89-217 (478)
82 KOG0473 Leucine-rich repeat pr 90.0 0.02 4.3E-07 50.9 -4.0 87 203-291 32-119 (326)
83 smart00369 LRR_TYP Leucine-ric 89.0 0.32 6.9E-06 27.2 1.8 21 235-255 1-21 (26)
84 smart00370 LRR Leucine-rich re 89.0 0.32 6.9E-06 27.2 1.8 21 235-255 1-21 (26)
85 KOG4308 LRR-containing protein 84.0 0.038 8.2E-07 56.1 -6.6 132 141-272 89-246 (478)
86 PF13516 LRR_6: Leucine Rich r 73.3 2.3 5E-05 23.0 1.3 15 235-249 1-15 (24)
87 smart00367 LRR_CC Leucine-rich 72.2 2.3 5E-05 23.7 1.2 15 432-446 2-16 (26)
88 smart00364 LRR_BAC Leucine-ric 70.4 2.9 6.4E-05 23.4 1.3 17 213-229 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 68.4 4.2 9E-05 22.8 1.6 13 213-225 3-15 (26)
90 KOG3763 mRNA export factor TAP 68.0 2.2 4.7E-05 43.3 0.7 15 432-446 270-284 (585)
91 smart00368 LRR_RI Leucine rich 48.3 15 0.00032 20.8 1.7 12 213-224 3-14 (28)
92 PF11430 EGL-1: Programmed cel 47.6 10 0.00022 19.7 0.8 13 5-17 2-14 (21)
93 KOG3763 mRNA export factor TAP 38.4 26 0.00057 35.9 2.7 61 186-246 215-280 (585)
94 PF14162 YozD: YozD-like prote 30.5 80 0.0017 20.8 3.0 30 65-94 21-52 (57)
95 PRK04841 transcriptional regul 22.5 2.2E+02 0.0048 31.9 7.0 105 3-120 204-332 (903)
96 PF05725 FNIP: FNIP Repeat; I 21.5 1.5E+02 0.0033 18.7 3.3 10 357-366 10-19 (44)
97 TIGR00864 PCC polycystin catio 21.4 61 0.0013 40.2 2.3 31 195-225 1-32 (2740)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-42 Score=364.53 Aligned_cols=400 Identities=27% Similarity=0.326 Sum_probs=279.7
Q ss_pred hHHHHHHhhcccCChhhHHHHHhhhcccch-------------------------HHHHHHHHhhhccccccccc-----
Q 045751 3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-------------------------EIVTSLLRDYECEIAGHLVN----- 52 (492)
Q Consensus 3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-------------------------~i~~~l~~sy~~~l~~~~k~----- 52 (492)
-|.+||+||++|+|||||+++||+.|+.|. .+++.+++||+. +|+++|.
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~-L~~~lK~CFLyc 419 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN-LPEELKSCFLYC 419 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh-hhHHHHHHHHhh
Confidence 489999999999999999999999999975 478999999995 7877774
Q ss_pred -----ceeecHHHHHHHHHHhCCCC--C-C--hHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhh-
Q 045751 53 -----IIVEEEEMIYQLWIAEGFIP--D-N--NEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVAL- 121 (492)
Q Consensus 53 -----~~~~~~~~Li~~wia~gf~~--~-~--~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~- 121 (492)
+|+|++++||.+|+||||+. + + +++.|++|+++||.+|+++..... +....|+|||++|++|.++++
T Consensus 420 alFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~ 497 (889)
T KOG4658|consen 420 ALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASD 497 (889)
T ss_pred ccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhcc
Confidence 46899999999999999997 3 3 899999999999999999998754 666799999999999999998
Q ss_pred ----ccCceEEccc-----CCCCCCCCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcE
Q 045751 122 ----AGEFIYSSVI-----DQESDSRKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFL 191 (492)
Q Consensus 122 ----~~~~~~~~~~-----~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 191 (492)
+++.+. ..+ ......+..+|++++.++.+..+. ... +++|+||.+.++... .......+|..++.|
T Consensus 498 ~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~-~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~L 573 (889)
T KOG4658|consen 498 FGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA-GSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLL 573 (889)
T ss_pred ccccccceEE-ECCcCccccccccchhheeEEEEeccchhhcc-CCCCCCccceEEEeecchh--hhhcCHHHHhhCcce
Confidence 666444 222 122335678999999966666665 455 889999999998620 124677889999999
Q ss_pred EEEEecCCc-CCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhccccccccccccc
Q 045751 192 RVLDLGSLV-LSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 192 ~~L~L~~~~-l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~ 269 (492)
++|||++|. +..+|.+|+.|-+||||+++++.+..+|.++ +++.+|.+|++..+ .+..+|.....+++|++|.+...
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999999876 7799999999999999999999999999999 99999999999998 45555666667999999988544
Q ss_pred c--cCCCCCccccCCcccceeecCCC-CccchhhhCCCcccc----eEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC
Q 045751 270 T--LPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLR----KLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES 342 (492)
Q Consensus 270 ~--~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 342 (492)
. .....-..+.++++|+.+.+... ...... +..++.|+ .+.+.++ .....+.++..+.+|+.|.+..
T Consensus 653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~-- 726 (889)
T KOG4658|consen 653 ALSNDKLLLKELENLEHLENLSITISSVLLLED-LLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILD-- 726 (889)
T ss_pred ccccchhhHHhhhcccchhhheeecchhHhHhh-hhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEc--
Confidence 3 11222233344666666655431 112222 33344333 2222222 3334445566666777776664
Q ss_pred CCCCc-------------------cEEEe---------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751 343 KMPRL-------------------SKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394 (492)
Q Consensus 343 ~~~~L-------------------~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 394 (492)
|... ..+.. ....+|++|+.|.+..|.....+.+....+..+..+.+..+.
T Consensus 727 -~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 727 -CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK 805 (889)
T ss_pred -CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence 1111 11100 111233667777777666555555555555555544444444
Q ss_pred cCCCcccccCCCCccccEEeecc
Q 045751 395 YLGRKLTCGSHGFPKLKVLHLKS 417 (492)
Q Consensus 395 ~~~~~~~~~~~~~~~L~~L~l~~ 417 (492)
+.+..+....++|+++..+.+..
T Consensus 806 ~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 806 LEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cccceeeecCCCCceeEecccCc
Confidence 43332233344444444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-37 Score=339.50 Aligned_cols=439 Identities=16% Similarity=0.160 Sum_probs=276.0
Q ss_pred hHHHHHHhhcccCChhhHHHHHhhhcccch-----------------HHHHHHHHhhhccccc-cccccee-------ec
Q 045751 3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-----------------EIVTSLLRDYECEIAG-HLVNIIV-------EE 57 (492)
Q Consensus 3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-----------------~i~~~l~~sy~~~l~~-~~k~~~~-------~~ 57 (492)
+++++++||++|+|+|||++++|+.|+++. +|..++++||+. ++. ..|.+|. -.
T Consensus 374 ~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~-L~~~~~k~~Fl~ia~ff~~~ 452 (1153)
T PLN03210 374 FMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDG-LNNKKDKAIFRHIACLFNGE 452 (1153)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhc-cCccchhhhhheehhhcCCC
Confidence 468999999999999999999999999864 478899999995 765 4666652 12
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhhccCce-----EEcccC
Q 045751 58 EEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAGEFI-----YSSVID 132 (492)
Q Consensus 58 ~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~~~~~~-----~~~~~~ 132 (492)
..+.|..|+|.+... ++..++.|+++||++... ..+.|||++++||+++++++... . .++.
T Consensus 453 ~~~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~-l~~~ 518 (1153)
T PLN03210 453 KVNDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREF-LVDA 518 (1153)
T ss_pred CHHHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCccee-EeCH
Confidence 223455666665443 233488999999998753 25899999999999998765310 0 1111
Q ss_pred -------CCCCCCCCeeEEEEecCCCCc--cccccc--CCCeeEEEeecCCCCC--CCchhHHHHhccC-CcEEEEEecC
Q 045751 133 -------QESDSRKMIKRLTANVNLSEL--DSLEDF--NLYLHSLLCLSSESHH--LDPLDCEKICKMF-KFLRVLDLGS 198 (492)
Q Consensus 133 -------~~~~~~~~~r~lsl~~~~~~~--~~~~~~--~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~-~~L~~L~L~~ 198 (492)
.......+++.+++....+.+ +...+| +++|+.|.+..+.... ......+..+..+ +.|+.|++.+
T Consensus 519 ~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~ 598 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK 598 (1153)
T ss_pred HHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC
Confidence 011233567777776444332 223345 7888888886553210 0001122333343 3577777777
Q ss_pred CcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccccccccccccccCCCCCc
Q 045751 199 LVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTLPAYPRN 277 (492)
Q Consensus 199 ~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~ 277 (492)
+.++.+|..+ ...+|+.|+++++.+..+|..+ ..+++|+.|++++| .++.+|. ++.+++|+.|++++|.....+|.
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 7777777665 3567777777777777777776 77777777777766 4566664 66677777777777766667777
Q ss_pred cccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC--------CCCCc
Q 045751 278 DCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES--------KMPRL 347 (492)
Q Consensus 278 ~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L 347 (492)
.++++++|+.|++++ ....++. ..++++|+.|++++| .....+|.. .++|+.|+++++. .+++|
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~Lsgc--~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGC--SRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEeCCCC--CCccccccc---cCCcCeeecCCCcccccccccccccc
Confidence 777777777777763 1222222 225667777777766 233333321 2345555555421 12233
Q ss_pred cEEEee-----------------cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751 348 SKIVLD-----------------EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL 410 (492)
Q Consensus 348 ~~L~l~-----------------~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 410 (492)
+.|.+. ...+|++|+.|++++|......|..++++++|+.|++++|..... ++.. ..+++|
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~-~~L~sL 827 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTG-INLESL 827 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCC-CCcccc
Confidence 333220 011125666666666665555666666666666666665532221 1111 134444
Q ss_pred cEEeecccC--------------------CcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 411 KVLHLKSML--------------------WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 411 ~~L~l~~~~--------------------~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+.|++++|. .++.+|..++.+++|+.|++.+|+.+..+|..+..+++|+.+++++|+
T Consensus 828 ~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 444444443 445566667788999999999999999999888899999999999997
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.4e-28 Score=271.53 Aligned_cols=318 Identities=19% Similarity=0.196 Sum_probs=175.1
Q ss_pred CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccC
Q 045751 139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLR 215 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~ 215 (492)
.+++.+.+..+.+....+..+ +++|++|++++|... ...+...+..+++|++|++++|.++ .+|. +.+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 467777777555554444444 777777777777653 1244445556677777777766655 3332 3455666
Q ss_pred EEEccCCCCc-cCchhHHhcCCCccEEecCCCcc-cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-
Q 045751 216 YLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYI-HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH- 292 (492)
Q Consensus 216 ~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l-~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~- 292 (492)
+|++++|.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.+++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 6666666655 555555 6666666666666644 34555566666666666666665555566666666666665553
Q ss_pred --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe--------
Q 045751 293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-------- 352 (492)
Q Consensus 293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-------- 352 (492)
....+.. ++.+++|++|++++| ...+.+|..++++++|+.|+++++. .+++|+.|++
T Consensus 223 ~l~~~~p~~-l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 223 NLSGEIPYE-IGGLTSLNHLDLVYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred ccCCcCChh-HhcCCCCCEEECcCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 1122333 555555666665555 3444455555555555555555411 2334444444
Q ss_pred ---ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecc------------
Q 045751 353 ---DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------------ 417 (492)
Q Consensus 353 ---~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------------ 417 (492)
++.++ ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..++.+++|+.|++++
T Consensus 300 ~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 300 IPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred CChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 23344 45555555555555445555555555555555555544322 23334444444444444
Q ss_pred ------------cCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 418 ------------MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 418 ------------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|.....+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 42222344445566666666666666665666666667777777776654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.2e-28 Score=271.84 Aligned_cols=297 Identities=22% Similarity=0.254 Sum_probs=148.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISN 237 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~ 237 (492)
.++|++|++++|... ...+..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++++
T Consensus 139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKS 213 (968)
T ss_pred cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCC
Confidence 445555555555443 123344555566666666665554 55555555666666666655555 455555 55566
Q ss_pred ccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC---CccchhhhCCCcccceEEee
Q 045751 238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP---RCCTPDILGRLPNLRKLRIH 313 (492)
Q Consensus 238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~ 313 (492)
|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|+.|++++. ...+.. +..+++|+.|+++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls 292 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLS 292 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECc
Confidence 666666555443 45555555556666666555555555555555555555555431 122223 5555555555555
Q ss_pred eccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCC
Q 045751 314 GDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELM 372 (492)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~ 372 (492)
+| .....+|..+.++++|+.|+++++. .+++|+.|.+ +++.+ ++|+.|++++|.+.
T Consensus 293 ~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 293 DN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLT 369 (968)
T ss_pred CC--eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeE
Confidence 55 3334445555555555555554411 2334444443 12233 44444555444444
Q ss_pred CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751 373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL 452 (492)
Q Consensus 373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 452 (492)
+..+..+..+++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccC-CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 444444444444444444444433322 2334455566666666653322444445555555555555555444444444
Q ss_pred cCCCCCcEEEecCC
Q 045751 453 WSVKRFKKLELWRP 466 (492)
Q Consensus 453 ~~l~~L~~L~l~~c 466 (492)
..+++|+.|++++|
T Consensus 449 ~~l~~L~~L~L~~n 462 (968)
T PLN00113 449 WDMPSLQMLSLARN 462 (968)
T ss_pred ccCCCCcEEECcCc
Confidence 44555555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.5e-30 Score=246.61 Aligned_cols=315 Identities=20% Similarity=0.238 Sum_probs=275.1
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY 216 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 216 (492)
..++.|+++.+|....+.-+.. .|.||++++..|... ..-.+..+-++..|.+|||+.|.++..|..+..-+++-.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 3577888888777776664444 999999999999886 344566677899999999999999999999999999999
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC----
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH---- 292 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~---- 292 (492)
|+|++|+|..+|..+|-++..|-+||||+|.+..+|+.+..+.+|++|+|++|.+.-.--..+..+++|..|.+++
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999999987543334445578888888875
Q ss_pred CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751 293 PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM 372 (492)
Q Consensus 293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~ 372 (492)
...+++. +..+.+|+.++++.| ....+|..+.++++|+.|++++ ..+++|.+..+.- .+|++|+++.|++
T Consensus 211 l~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~----N~iteL~~~~~~W-~~lEtLNlSrNQL- 280 (1255)
T KOG0444|consen 211 LDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG----NKITELNMTEGEW-ENLETLNLSRNQL- 280 (1255)
T ss_pred hhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc----CceeeeeccHHHH-hhhhhhccccchh-
Confidence 2344555 889999999999997 7778899999999999999984 6788888767777 8999999999997
Q ss_pred CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751 373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL 452 (492)
Q Consensus 373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 452 (492)
...|..+.+++.|+.|.+.+|.++-+.++..++.+.+|+.+..++| .++-+|.+++.|++|+.|.++.|..+ .+|+.+
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhh
Confidence 5678889999999999999999988888999999999999999997 89999999999999999999988755 799999
Q ss_pred cCCCCCcEEEecCCC
Q 045751 453 WSVKRFKKLELWRPQ 467 (492)
Q Consensus 453 ~~l~~L~~L~l~~c~ 467 (492)
.-++.|+.|++..+|
T Consensus 359 HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhcCCcceeeccCCc
Confidence 999999999999987
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=6.8e-26 Score=218.18 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=209.5
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
.+..++|++++|.+. .+...+|.++++|+.+++..|.++.+|......-||+.|+|.+|.|.++..+-...++.|+
T Consensus 77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 788899999999886 4667888999999999999999999998777777899999999999877665447888899
Q ss_pred EEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeecc
Q 045751 240 TLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDL 316 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~ 316 (492)
.|||+.|.+..+|.. +..-.++++|+|++|.++..-...+.++.+|..+.+++ ....+...|.++++|+.|++..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 999999988888743 55557888999998888766666677788888888874 455566657888888888888874
Q ss_pred CcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCC
Q 045751 317 SNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 317 ~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
....--..|..+++|+.|.+..++ .+.+++.|++ |+-++ ..|+.|++++|.+....
T Consensus 233 --irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 233 --IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIH 309 (873)
T ss_pred --eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheee
Confidence 221113456667777777665532 5556666665 44455 55555555555554444
Q ss_pred cccccCCCccCeEEEeccccCCCc-----------------------ccccCCCCccccEEeecccCCcc-eEE---Ecc
Q 045751 376 MPTLEKLPLLQVLKLKKNSYLGRK-----------------------LTCGSHGFPKLKVLHLKSMLWLE-EWT---MGT 428 (492)
Q Consensus 376 ~~~l~~l~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~-~l~---~~~ 428 (492)
+..+.-+++|+.|+|+.|+++... -...+.++.+|++|+|+.| .+. .+. ..+
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAF 388 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhh
Confidence 444444555555555554443211 1233456677888888776 443 221 235
Q ss_pred CccccccEEEEeecCCcCccc-hhccCCCCCcEEEecCCC
Q 045751 429 GAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 429 ~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 467 (492)
..+++|+.|.+.+|. ++.+| ..+..+++|++|++.+++
T Consensus 389 ~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ccchhhhheeecCce-eeecchhhhccCcccceecCCCCc
Confidence 568899999998886 55565 477888999999998886
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-26 Score=221.69 Aligned_cols=316 Identities=18% Similarity=0.159 Sum_probs=246.6
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~ 213 (492)
..+.+.++.+.+|.+..+..+.. .+.||+|+++.|.+. ++....|..-.+++.|+|++|.|+.+. ..|..+.+
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 34568888888788888776666 889999999988876 366667777788999999999988664 66788888
Q ss_pred cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751 214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH 292 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~ 292 (492)
|..|.|+.|+++.+|.-.|.++++|+.|+|..|.+... .-.|..+++|+.|.|..|.+..---..+..+.+++.+++..
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 99999999999999988888899999999998877665 34588889999999988887543333344488888888863
Q ss_pred --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecc
Q 045751 293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNT 369 (492)
Q Consensus 293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~ 369 (492)
....-..++-+++.|+.|+++.| .....-++++..+++|+.|+|+ ..+++.|+- .+..+ ..|++|.|++|
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs----~N~i~~l~~~sf~~L-~~Le~LnLs~N 351 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLS----SNRITRLDEGSFRVL-SQLEELNLSHN 351 (873)
T ss_pred chhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEecc----ccccccCChhHHHHH-HHhhhhccccc
Confidence 22223334778889999999998 5666667788888899999998 455555544 45566 88999999999
Q ss_pred cCCCCCcccccCCCccCeEEEeccccCCCc--ccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcC
Q 045751 370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRK--LTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLK 446 (492)
Q Consensus 370 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~ 446 (492)
.++......|..+.+|++|+|.+|.+.... -...+.++++|+.|.+.+| +++.+|. .+..+++|+.|++.+|+..+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCccee
Confidence 987766677889999999999988765322 1233567999999999998 8888875 47899999999999999887
Q ss_pred ccchhccCCCCCcEEEecC
Q 045751 447 RLPKQLWSVKRFKKLELWR 465 (492)
Q Consensus 447 ~lp~~l~~l~~L~~L~l~~ 465 (492)
.-|..+..+ .|++|.+..
T Consensus 431 Iq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 431 IQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecccccccc-hhhhhhhcc
Confidence 778888888 888887643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.4e-27 Score=228.64 Aligned_cols=311 Identities=19% Similarity=0.176 Sum_probs=262.6
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC--CCchhhcccccc
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS--QLPSGIENLFFL 214 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L 214 (492)
.++++.+.+.-.....++.+.. +.+|+.|.+.+|... .....++.++.||.+++..|+++ .+|..+..+..|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4577888887556667775555 999999999999876 56678889999999999999987 889999999999
Q ss_pred CEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCC
Q 045751 215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP 293 (492)
Q Consensus 215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~ 293 (492)
..|||++|++.+.|..+ ..-+++-.|+||+|+|..+|.. +-+++-|-.||||+|.+ ..+|+.+..|..|+.|.++++
T Consensus 106 t~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCC
Confidence 99999999999999999 9999999999999999999976 67899999999999998 689999999999999999863
Q ss_pred ---CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEeccc
Q 045751 294 ---RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTE 370 (492)
Q Consensus 294 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~ 370 (492)
..-+.. +..+++|+.|.+++.+ .....+|.++..+.+|..++++ +.+|..++-.+-++ ++|+.|+|++|.
T Consensus 184 PL~hfQLrQ-LPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS----~N~Lp~vPecly~l-~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 184 PLNHFQLRQ-LPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS----ENNLPIVPECLYKL-RNLRRLNLSGNK 256 (1255)
T ss_pred hhhHHHHhc-Cccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc----ccCCCcchHHHhhh-hhhheeccCcCc
Confidence 223334 5667778888888764 6778899999999999999998 56666554456677 899999999999
Q ss_pred CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcCcc
Q 045751 371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLKRL 448 (492)
Q Consensus 371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l 448 (492)
++.. -...+.+.+|++|+++.|+++. ++.....+++|+.|.+.+| .++ .+|.++|.+..|+.+...+|. +.-+
T Consensus 257 iteL-~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElV 331 (1255)
T KOG0444|consen 257 ITEL-NMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELV 331 (1255)
T ss_pred eeee-eccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccC
Confidence 8543 3356778999999999999875 4666788999999999987 444 899999999999999998774 7789
Q ss_pred chhccCCCCCcEEEecCCC
Q 045751 449 PKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 449 p~~l~~l~~L~~L~l~~c~ 467 (492)
|+++.+|+.|+.|.++.+.
T Consensus 332 PEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred chhhhhhHHHHHhcccccc
Confidence 9999999999999998764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=4.2e-25 Score=204.05 Aligned_cols=181 Identities=21% Similarity=0.162 Sum_probs=90.9
Q ss_pred CCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccC
Q 045751 149 NLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSL 227 (492)
Q Consensus 149 ~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l 227 (492)
+.....+.... ...++.++++.|... ..++.+..+-.|..|+..+|.+..+|+.+..+..|..|++.+|++.++
T Consensus 101 n~ls~lp~~i~s~~~l~~l~~s~n~~~-----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 101 NKLSELPEQIGSLISLVKLDCSSNELK-----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred chHhhccHHHhhhhhhhhhhcccccee-----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC
Confidence 34444443333 555555555555544 233444445555555555555555555555555555555555555555
Q ss_pred chhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCc
Q 045751 228 PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLP 305 (492)
Q Consensus 228 p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~ 305 (492)
|+.. -+++.|++||...|-++.+|+.++.+.+|..|++.+|++ ..+| .|+.+..|.+++++. ....+++...+++
T Consensus 176 ~~~~-i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 176 PENH-IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN 252 (565)
T ss_pred CHHH-HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence 5554 445555555555555555555555555555555555554 2333 444444444444442 2223333333555
Q ss_pred ccceEEeeeccCcchhhHHHHhhcCCCCCeEEeec
Q 045751 306 NLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN 340 (492)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 340 (492)
++..|++++| ...++|+.+.-+++|+.||++.
T Consensus 253 ~l~vLDLRdN---klke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 253 SLLVLDLRDN---KLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred cceeeecccc---ccccCchHHHHhhhhhhhcccC
Confidence 5555555554 4444555555555555555554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.7e-21 Score=214.04 Aligned_cols=289 Identities=22% Similarity=0.218 Sum_probs=204.1
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc------CC-CCchhhcccc-ccCEEEccCCCCccCchhH
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV------LS-QLPSGIENLF-FLRYLKLNIPSLKSLPSSF 231 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~------l~-~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~ 231 (492)
...++.+.+...... ........|.+|++|+.|.+..+. +. .+|..+..++ +|+.|.+.++.+..+|..+
T Consensus 531 ~~~v~~i~l~~~~~~--~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f 608 (1153)
T PLN03210 531 TKKVLGITLDIDEID--ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF 608 (1153)
T ss_pred cceeeEEEeccCccc--eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence 456666666544433 233567789999999999997653 22 5777777665 6999999999999999887
Q ss_pred HhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCcccc
Q 045751 232 LSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLPNLR 308 (492)
Q Consensus 232 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~~L~ 308 (492)
...+|+.|++++|.+..+|.++..+++|+.|++++|.....+|. ++.+++|+.|++.+ ....+.. ++.+++|+
T Consensus 609 --~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~ 684 (1153)
T PLN03210 609 --RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLE 684 (1153)
T ss_pred --CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCC
Confidence 68999999999999999999999999999999998876677774 77799999999975 2334445 89999999
Q ss_pred eEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeE
Q 045751 309 KLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVL 388 (492)
Q Consensus 309 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 388 (492)
.|++++| .....+|..+ ++++|+.|+++ .|..++.+ ...+.+|++|++++|.+. ..|..+ .+++|+.|
T Consensus 685 ~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Ls---gc~~L~~~----p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L 752 (1153)
T PLN03210 685 DLDMSRC--ENLEILPTGI-NLKSLYRLNLS---GCSRLKSF----PDISTNISWLDLDETAIE-EFPSNL-RLENLDEL 752 (1153)
T ss_pred EEeCCCC--CCcCccCCcC-CCCCCCEEeCC---CCCCcccc----ccccCCcCeeecCCCccc-cccccc-cccccccc
Confidence 9999998 5667777655 78999999999 46666543 222367888888887763 333322 45666666
Q ss_pred EEeccccC---CC---cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEE
Q 045751 389 KLKKNSYL---GR---KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLE 462 (492)
Q Consensus 389 ~l~~~~~~---~~---~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 462 (492)
.+.++... .. ..+.....+++|+.|++++|+.+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 66542210 00 001112234566666666666666666666666666666666666666666554 566666666
Q ss_pred ecCCC
Q 045751 463 LWRPQ 467 (492)
Q Consensus 463 l~~c~ 467 (492)
+++|.
T Consensus 832 Ls~c~ 836 (1153)
T PLN03210 832 LSGCS 836 (1153)
T ss_pred CCCCC
Confidence 66664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.4e-22 Score=187.41 Aligned_cols=263 Identities=21% Similarity=0.190 Sum_probs=186.3
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
...++.++++.|... .....+.++..|.+|++..|.+..+|++++.+..++.|+.++|++.++|+.+ +.+.+|.
T Consensus 44 qv~l~~lils~N~l~-----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~ 117 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLV 117 (565)
T ss_pred hcchhhhhhccCchh-----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhh
Confidence 445677778888775 5566778888899999999988888988998888999999999999999988 8899999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccC
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLS 317 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (492)
+|+.++|.+.++|++++.+..|..++..+|++ ..+|.+++++.++..+.+.+ ....++. .-+++.|++|+...|
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N-- 193 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN-- 193 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh--
Confidence 99999998888888888888888888888877 46777777766666666653 3334444 444677777776665
Q ss_pred cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751 318 NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG 397 (492)
Q Consensus 318 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 397 (492)
..+.+|..++.+ .+|..|++..|++. .. +.|+++..|++|+++.|.+..
T Consensus 194 -~L~tlP~~lg~l----------------------------~~L~~LyL~~Nki~-~l-Pef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 194 -LLETLPPELGGL----------------------------ESLELLYLRRNKIR-FL-PEFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred -hhhcCChhhcch----------------------------hhhHHHHhhhcccc-cC-CCCCccHHHHHHHhcccHHHh
Confidence 566666666555 44445555555542 22 256666666777776665543
Q ss_pred CcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 398 RKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 398 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.. ......+++|..|++.+| .++++|.++.-+.+|++|++++|. ++.+|..++++ .|+.|.+.|+|
T Consensus 243 lp-ae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 243 LP-AEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hH-HHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 21 222346677777777776 677777777777777777777665 33567777777 77777777776
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=8.6e-22 Score=199.60 Aligned_cols=313 Identities=20% Similarity=0.220 Sum_probs=181.9
Q ss_pred CeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEE
Q 045751 140 MIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLK 218 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~ 218 (492)
++.++.+.++.+...+...- .++|+.|.++.|.+. ..+....++++|++|.|.+|.+..+|.++..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 36677777555555553333 788888888888775 445677788888888888888888888888888888888
Q ss_pred ccCCCCccCchhHHhcCCCccEEecCCC-cccc-------------------hHHHhhcccccccccccccccCCC----
Q 045751 219 LNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHH-------------------TADVFWEMNKLRHLNFGLFTLPAY---- 274 (492)
Q Consensus 219 l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~-------------------lp~~~~~l~~L~~L~L~~~~~~~~---- 274 (492)
+++|.+..+|..+ ..+..++.++.++| .+.. ++..+..++. .|+|.+|.+...
T Consensus 121 lS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cchhccCCCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 8888888888776 55555555554444 1111 1111222222 234443333200
Q ss_pred -------------------------------CCc----cccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751 275 -------------------------------PRN----DCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN 318 (492)
Q Consensus 275 -------------------------------~p~----~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (492)
.|- ....-++|+.++++. ....++++++.+.+|+.+.+..|
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N--- 274 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN--- 274 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch---
Confidence 000 000022344444442 22233465888888998888887
Q ss_pred chhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe----------------------------ecC------
Q 045751 319 NQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL----------------------------DEY------ 355 (492)
Q Consensus 319 ~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l----------------------------~~~------ 355 (492)
....+|..+...++|+.|.+..++ +...|++|++ .++
T Consensus 275 ~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 275 RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 446666666666666666555422 3444555554 011
Q ss_pred --CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc-----
Q 045751 356 --QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT----- 428 (492)
Q Consensus 356 --~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----- 428 (492)
.. +.|+.|.+.+|.+++...+.+.++++|+.|+|++|++.... ...+..++.|+.|.|++| .++.+|...
T Consensus 355 e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 355 ENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGN-KLTTLPDTVANLGR 431 (1081)
T ss_pred chhh-HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhh
Confidence 12 45666677777777777777777777777777777654321 223456666777777776 555555444
Q ss_pred -----------------CccccccEEEEeecCCcC-ccchhccCCCCCcEEEecCCC
Q 045751 429 -----------------GAMPKLECLIIDPCAYLK-RLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 429 -----------------~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..++.|+.++++.|.... .+|..... ++|++|+++|+.
T Consensus 432 L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 455566666666554332 23332222 667777777765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=3e-20 Score=188.50 Aligned_cols=315 Identities=23% Similarity=0.190 Sum_probs=175.3
Q ss_pred CCCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccC
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLR 215 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 215 (492)
...+++++.+..+.+..++.... ..+|+++.+.+|... ..+..+..+++|.+|+++.|.+...|..+..+..+.
T Consensus 66 ~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-----~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~ 140 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-----SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEE 140 (1081)
T ss_pred hHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-----cCchhHHhhhcccccccchhccCCCchhHHhhhHHH
Confidence 34567888888788888886666 999999999999886 778889999999999999998876665544432222
Q ss_pred E-----------------------------------------EEccCCCCccCchhH-------H---------------
Q 045751 216 Y-----------------------------------------LKLNIPSLKSLPSSF-------L--------------- 232 (492)
Q Consensus 216 ~-----------------------------------------L~l~~~~i~~lp~~~-------~--------------- 232 (492)
. |+|++|.+..+.-.. +
T Consensus 141 ~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~ 220 (1081)
T KOG0618|consen 141 ELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPS 220 (1081)
T ss_pred HHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcc
Confidence 2 444443332100000 0
Q ss_pred -----------------hcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--C
Q 045751 233 -----------------SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--P 293 (492)
Q Consensus 233 -----------------~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~ 293 (492)
.--.+|+++|++.+++..+|..++.+.+|+.++..+|.+ ..+|..+...++|+.+.+.. .
T Consensus 221 l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred hheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhh
Confidence 001235555555555555555555555555555555555 34555555555555554442 2
Q ss_pred CccchhhhCCCcccceEEeeeccCcchhhHHHHhh-cCC-CCCeEEeec---------C-CCCCCccEEEe---------
Q 045751 294 RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLY-KLS-SLESLKLVN---------E-SKMPRLSKIVL--------- 352 (492)
Q Consensus 294 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~-~L~~L~l~~---------~-~~~~~L~~L~l--------- 352 (492)
...++. ...+++|++|++..| ....+|+.+- ... .|+.|+.+. + .....|+.|++
T Consensus 300 ~yip~~-le~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 300 EYIPPF-LEGLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhCCCc-ccccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 233333 555666666666665 2222222111 000 011111111 0 02222333322
Q ss_pred --ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC---------------------cccccCCCCcc
Q 045751 353 --DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR---------------------KLTCGSHGFPK 409 (492)
Q Consensus 353 --~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~~ 409 (492)
.+.++ ++|+.|+|++|++.......+.+++.|+.|+|+||.++.. .+| .+..++.
T Consensus 376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 23445 6666666666665434444455666666666666654311 122 4567889
Q ss_pred ccEEeecccCCcceEEEccC-ccccccEEEEeecCCcCccchhccCCCCCcEEEec
Q 045751 410 LKVLHLKSMLWLEEWTMGTG-AMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELW 464 (492)
Q Consensus 410 L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 464 (492)
|+.++++.| +++.+..... .-|+|+.|++++|..+..--..+..+.++...++.
T Consensus 454 L~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 454 LKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred ceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 999999987 7774432222 22899999999998654333344445555555544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=6.5e-16 Score=161.52 Aligned_cols=233 Identities=21% Similarity=0.108 Sum_probs=115.1
Q ss_pred cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~ 269 (492)
+|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. .++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCC
Confidence 566666666666655542 35666666666666666532 24556666666655555542 234555666666
Q ss_pred ccCCCCCccccCCcccceeecCCC-CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751 270 TLPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS 348 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 348 (492)
.+. .+|.. .++|+.|+++++ ...++. -..+|+.|++++| ....+|.. ..+|+.|++++ .+|+
T Consensus 293 ~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N---~L~~LP~l---p~~Lq~LdLS~----N~Ls 355 (788)
T PRK15387 293 QLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN---QLTSLPTL---PSGLQELSVSD----NQLA 355 (788)
T ss_pred ccc-ccccc---ccccceeECCCCccccCCC---CcccccccccccC---cccccccc---ccccceEecCC----CccC
Confidence 553 33332 244555555431 111111 1124555566655 22223321 13566666653 2233
Q ss_pred EEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc
Q 045751 349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT 428 (492)
Q Consensus 349 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 428 (492)
. +..+|++|+.|++++|.+.. .|.. ..+|+.|++++|.+... +. ..++|+.|++++| .++.+|..
T Consensus 356 ~----LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L--P~---l~s~L~~LdLS~N-~LssIP~l- 420 (788)
T PRK15387 356 S----LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL--PV---LPSELKELMVSGN-RLTSLPML- 420 (788)
T ss_pred C----CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC--CC---cccCCCEEEccCC-cCCCCCcc-
Confidence 1 22223555666666665532 2221 23456666666655431 11 1245666666665 45555432
Q ss_pred CccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 429 GAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 429 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..+|+.|++++|.. +.+|..+.++++|+.|++++|+
T Consensus 421 --~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCC
Confidence 23455566665543 3556656666666666666654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=6.4e-16 Score=161.54 Aligned_cols=262 Identities=17% Similarity=0.057 Sum_probs=186.9
Q ss_pred eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEcc
Q 045751 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLN 220 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 220 (492)
-..+.+..+....+| ..+.++|+.|.+.+|.+.. + + ...++|++|++++|.++.+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~LtsLP-~~l~~~L~~L~L~~N~Lt~----L-P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTS----L-P---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCC-cchhcCCCEEEccCCcCCC----C-C---CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 345566645555444 3446689999999998762 2 2 2358899999999999988863 4689999999
Q ss_pred CCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchh
Q 045751 221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPD 299 (492)
Q Consensus 221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~ 299 (492)
+|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+.+ +|... .+|+.|++.+ ....++.
T Consensus 271 ~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~ 339 (788)
T PRK15387 271 SNPLTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPT 339 (788)
T ss_pred CCchhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccccccc
Confidence 9999988853 35688999999999988863 5789999999998864 55433 2455555553 1111222
Q ss_pred hhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccc
Q 045751 300 ILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL 379 (492)
Q Consensus 300 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l 379 (492)
+ ..+|+.|++++| ....+|.. ..+|+.|+++. ..|.. +..+|.+|+.|++++|.+.. .|..
T Consensus 340 -l--p~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~----N~L~~----LP~l~~~L~~LdLs~N~Lt~-LP~l- 400 (788)
T PRK15387 340 -L--PSGLQELSVSDN---QLASLPTL---PSELYKLWAYN----NRLTS----LPALPSGLKELIVSGNRLTS-LPVL- 400 (788)
T ss_pred -c--ccccceEecCCC---ccCCCCCC---Ccccceehhhc----ccccc----CcccccccceEEecCCcccC-CCCc-
Confidence 1 247999999998 33345532 24677777763 33332 23344789999999999864 3322
Q ss_pred cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhc
Q 045751 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQL 452 (492)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 452 (492)
.++|+.|++++|.+... +. .+.+|+.|++++| .++.+|..++.+++|+.|++++|+.....|..+
T Consensus 401 --~s~L~~LdLS~N~LssI--P~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 --PSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred --ccCCCEEEccCCcCCCC--Cc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 36899999999988752 32 2457899999998 788999989999999999999999877665544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2e-15 Score=158.79 Aligned_cols=243 Identities=20% Similarity=0.226 Sum_probs=144.4
Q ss_pred CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGL 268 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~ 268 (492)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+ . .+|++|++++|.++.+|..+. ++|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 345667777776666665543 36777777777777777665 2 467777777776666665443 3567777777
Q ss_pred cccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751 269 FTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR 346 (492)
Q Consensus 269 ~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 346 (492)
|.+. .+|..+. ++|+.|++++ ....+.. + .++|+.|++++| ....+|..+. ++|+.|++++ .+
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~----N~ 315 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDN---SIRTLPAHLP--SGITHLNVQS----NS 315 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCC---ccccCcccch--hhHHHHHhcC----Cc
Confidence 7664 4555443 3566666653 1112222 2 246777777776 2223343322 3566666663 23
Q ss_pred ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM 426 (492)
Q Consensus 347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 426 (492)
+..++ ..+|++|+.|++++|.++. .|..+. ++|+.|++++|.+... +.. -.++|+.|++++| .++.+|.
T Consensus 316 Lt~LP---~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L--P~~--lp~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 316 LTALP---ETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL--PET--LPPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred cccCC---ccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC--Chh--hcCCcCEEECCCC-cCCCCCH
Confidence 33221 1123678888888887654 333332 6788888888876532 221 2357888888887 6666765
Q ss_pred ccCccccccEEEEeecCCcCccchhc----cCCCCCcEEEecCCC
Q 045751 427 GTGAMPKLECLIIDPCAYLKRLPKQL----WSVKRFKKLELWRPQ 467 (492)
Q Consensus 427 ~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~c~ 467 (492)
.+. ++|+.|++++|... .+|..+ ..++++..|++.++|
T Consensus 385 ~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 433 36888888887644 555433 445777888888877
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.9e-17 Score=135.43 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=93.4
Q ss_pred cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF 266 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L 266 (492)
++.+...|-|++|+++.+|+.|..+.+|+.|++.+|+|+++|.++ +.+++|++|++.-|.+..+|.+|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 445555666677777666666777777777777777777777777 7777777777777766667777777777777777
Q ss_pred cccccCC-CCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEee
Q 045751 267 GLFTLPA-YPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLV 339 (492)
Q Consensus 267 ~~~~~~~-~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 339 (492)
.+|++.. .+|..+..+++|+-+++++ ....+++ ++++++|+.|.+++| ..-.+|..++.++.|++|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcc
Confidence 7666543 4555555556666555553 2233444 666666666666665 444555555555555555444
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5e-17 Score=134.05 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=140.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
++++..|.++.|... ..++.+..+.+|++|++.+|+++.+|.+++.+++|+.|++.-|++..+|..+ +.++.|+
T Consensus 32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALE 105 (264)
T ss_pred hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhh
Confidence 778888889999886 5667788999999999999999999999999999999999999999999998 9999999
Q ss_pred EEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751 240 TLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 240 ~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
.||+++|++ ..+|..|..++.|+.|.++.|.+ ..+|..++++++|+.+.+.. ..+.+.+ ++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc
Confidence 999999966 57899999999999999999987 68999999999999999974 4566777 999999999999998
Q ss_pred cCcchhhHHHHhhc
Q 045751 316 LSNNQSLLSKSLYK 329 (492)
Q Consensus 316 ~~~~~~~~~~~l~~ 329 (492)
....+|..++.
T Consensus 184 ---rl~vlppel~~ 194 (264)
T KOG0617|consen 184 ---RLTVLPPELAN 194 (264)
T ss_pred ---eeeecChhhhh
Confidence 44455555443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1e-14 Score=153.44 Aligned_cols=223 Identities=17% Similarity=0.265 Sum_probs=109.3
Q ss_pred cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~ 269 (492)
+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 45555555555555554332 24555555555555555443 1 245555555555555554332 24555555555
Q ss_pred ccCCCCCccccCCcccceeecCCC--CccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 270 TLPAYPRNDCGSLENLNFISALHP--RCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
.+. .+|..+. ++|+.|++++. ...+.. + .++|+.|++++| ....+|..+. ++|+.|++++ ..+
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N---~Lt~LP~~l~--~sL~~L~Ls~----N~L 337 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSN---SLTALPETLP--PGLKTLEAGE----NAL 337 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCC---ccccCCcccc--ccceeccccC----Ccc
Confidence 443 3444332 24444544421 111111 1 124556666665 2222333221 4566666653 123
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG 427 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 427 (492)
..++ ..+|++|+.|++++|.+. ..|..+ .+.|+.|++++|.++.. +..+ ..+|+.|++++| .+..+|..
T Consensus 338 t~LP---~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L--P~~l--~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 338 TSLP---ASLPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL--PENL--PAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred ccCC---hhhcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC--CHhH--HHHHHHHhhccC-CcccCchh
Confidence 3221 112357777777777764 233333 25677777777766532 2211 235777777776 55555543
Q ss_pred c----CccccccEEEEeecCCc
Q 045751 428 T----GAMPKLECLIIDPCAYL 445 (492)
Q Consensus 428 ~----~~l~~L~~L~l~~c~~l 445 (492)
+ +.++++..|++.+|+..
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCcc
Confidence 2 33467777777777753
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=6.5e-16 Score=143.39 Aligned_cols=270 Identities=18% Similarity=0.121 Sum_probs=177.1
Q ss_pred ccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccC-CCCccCchhHHhcC
Q 045751 158 DFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNI-PSLKSLPSSFLSSI 235 (492)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~-~~i~~lp~~~~~~l 235 (492)
..-+....+.|..|.+. .+++..|+.+++||.|||++|.|+ --|+.|..+..|..|-+-+ |+|+++|...|++|
T Consensus 64 ~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 33667778888888886 588889999999999999999998 4478888888887776655 89999999999999
Q ss_pred CCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCc-cccCCcccceeecCCCC----cc-----------ch
Q 045751 236 SNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALHPR----CC-----------TP 298 (492)
Q Consensus 236 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~~~----~~-----------~~ 298 (492)
..|+.|.+.-|++.-++ +.+..+++|..|.+..|.+. .++. .+..+..++.+.+.... .. +.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999888887665 44888999999988888763 3343 45556666666554211 00 01
Q ss_pred hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeE--EeecCC----CCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL--KLVNES----KMPRLSKIVLDEYQFPPSLTHLSFSNTELM 372 (492)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L--~l~~~~----~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~ 372 (492)
+ ++.........+...+ ....-+..+... ++.+ .+...+ .||.- .+..+ ++|++|+|++|.++
T Consensus 219 e-tsgarc~~p~rl~~~R--i~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~-----cf~~L-~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 219 E-TSGARCVSPYRLYYKR--INQEDARKFLCS--LESLPSRLSSEDFPDSICPAK-----CFKKL-PNLRKLNLSNNKIT 287 (498)
T ss_pred h-cccceecchHHHHHHH--hcccchhhhhhh--HHhHHHhhccccCcCCcChHH-----HHhhc-ccceEeccCCCccc
Confidence 1 1222222211121111 000000000000 1111 000000 11110 35677 88899999999988
Q ss_pred CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCc
Q 045751 373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYL 445 (492)
Q Consensus 373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l 445 (492)
.....+|.++..++.|.|..|.+.... ...+.++..|+.|+|.+| .++.+ |..+..+.+|.+|++-.||..
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence 888888888888999999888765433 344677888888999888 55544 556788888888888877753
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=2.9e-16 Score=145.74 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=176.9
Q ss_pred cEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCC-CcccchHHH-hhcccccccccc
Q 045751 190 FLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPF-SYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~-~~l~~lp~~-~~~l~~L~~L~L 266 (492)
.-..++|..|.|+.+| .+|+.+++||.|||+.|.|+.|.+..|..+++|..|-+.+ |.|+.+|.. |+.+..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4567888999999887 6778899999999999999988887778998888877666 689999865 888899999988
Q ss_pred cccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCc----------chhhHHHHhhcCCCCC
Q 045751 267 GLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSN----------NQSLLSKSLYKLSSLE 334 (492)
Q Consensus 267 ~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~----------~~~~~~~~l~~l~~L~ 334 (492)
.-|++.....+.+..++++..|.+.. .......++..+..++.+.+..|... .....|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 88877655555566666666666653 12222223555666666665554200 0000111111111111
Q ss_pred eEEeecCCCCCCccEEEe--ecCCCCCCceEEEEecccCCCCCc-ccccCCCccCeEEEeccccCCCcccccCCCCcccc
Q 045751 335 SLKLVNESKMPRLSKIVL--DEYQFPPSLTHLSFSNTELMEDPM-PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLK 411 (492)
Q Consensus 335 ~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 411 (492)
...+.+ .+...++- ..... ..+.+=-.+.|......| ..|..+|+|++|++++|.++... ...+.+...++
T Consensus 228 p~rl~~----~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~ 301 (498)
T KOG4237|consen 228 PYRLYY----KRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQ 301 (498)
T ss_pred hHHHHH----HHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcchhhhh
Confidence 011100 00000000 00000 111111112333323333 45889999999999999988765 56678899999
Q ss_pred EEeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 412 VLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 412 ~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.|.|..| .++.+.. .+..+..|+.|++.+|..+..-|..+..+.+|.+|.+-++|
T Consensus 302 eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 302 ELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 9999998 7776643 47899999999999999888888889999999999998766
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.2e-15 Score=146.37 Aligned_cols=274 Identities=19% Similarity=0.140 Sum_probs=153.6
Q ss_pred EEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-------CchhHHh
Q 045751 166 LLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-------LPSSFLS 233 (492)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~ 233 (492)
|++..+... .......+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+ .
T Consensus 3 l~L~~~~l~---~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~ 78 (319)
T cd00116 3 LSLKGELLK---TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-T 78 (319)
T ss_pred cccccCccc---ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-H
Confidence 455555443 2344566777788999999999874 355666777789999998877663 22333 6
Q ss_pred cCCCccEEecCCCccc-chHHHhhcccc---cccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCC-cccc
Q 045751 234 SISNLYTLDMPFSYIH-HTADVFWEMNK---LRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRL-PNLR 308 (492)
Q Consensus 234 ~l~~L~~L~L~~~~l~-~lp~~~~~l~~---L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l-~~L~ 308 (492)
.+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+...... .....+..+ ++|+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~------------------~l~~~l~~~~~~L~ 140 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR------------------LLAKGLKDLPPALE 140 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH------------------HHHHHHHhCCCCce
Confidence 7888999999888664 34444555555 88888888875421100 111114455 6777
Q ss_pred eEEeeeccCc--chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCCc----c
Q 045751 309 KLRIHGDLSN--NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDPM----P 377 (492)
Q Consensus 309 ~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~----~ 377 (492)
.|++++|.-. ....++..+..+++|+.|+++++ .+..-.+ .+..+ ++|++|++++|.+.+... .
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANN----GIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC----CCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHH
Confidence 7777777311 12234445555566666666531 1110000 12233 466777777766543322 2
Q ss_pred cccCCCccCeEEEeccccCCCcccccCC----CCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCCcCc-
Q 045751 378 TLEKLPLLQVLKLKKNSYLGRKLTCGSH----GFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAYLKR- 447 (492)
Q Consensus 378 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~- 447 (492)
.+..+++|+.|++++|.+.+..+..... ..+.|+.|++++| .++ .+...+..+++|+.+++++|.....
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 3445667777777766665432211111 2356777777766 332 1222234456677777776665532
Q ss_pred ---cchhccCC-CCCcEEEecCCC
Q 045751 448 ---LPKQLWSV-KRFKKLELWRPQ 467 (492)
Q Consensus 448 ---lp~~l~~l-~~L~~L~l~~c~ 467 (492)
+...+... +.|+++++.+.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCC
Confidence 33333333 566666666544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=8.5e-15 Score=142.26 Aligned_cols=259 Identities=19% Similarity=0.077 Sum_probs=161.0
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-------CchhhccccccCEEEccCCCCc-cCchhH
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-------LPSGIENLFFLRYLKLNIPSLK-SLPSSF 231 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-------l~~~~~~l~~L~~L~l~~~~i~-~lp~~~ 231 (492)
.++|+.|.+.++.............+...+.++.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 67799999999987521223456677888999999999987652 3355677889999999999988 444444
Q ss_pred HhcCCC---ccEEecCCCccc-----chHHHhhcc-cccccccccccccCCCCCccccCCcccceeecCCCCccchhhhC
Q 045751 232 LSSISN---LYTLDMPFSYIH-----HTADVFWEM-NKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILG 302 (492)
Q Consensus 232 ~~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~ 302 (492)
..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+.+..+..+ ... +.
T Consensus 102 -~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----------------~~~-~~ 162 (319)
T cd00116 102 -ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL-----------------AKA-LR 162 (319)
T ss_pred -HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH-----------------HHH-HH
Confidence 55555 999999999765 334456677 899999999998763221111 111 44
Q ss_pred CCcccceEEeeeccC--cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCC
Q 045751 303 RLPNLRKLRIHGDLS--NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 303 ~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
.+++|++|++++|.- .....++..+..+++|+.|++++ + .+..... .+..+ ++|++|++++|.+.+..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---n-~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN---N-GLTDEGASALAETLASL-KSLEVLNLGDNNLTDAG 237 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC---C-ccChHHHHHHHHHhccc-CCCCEEecCCCcCchHH
Confidence 555566666666520 01122334444555666666653 1 1111100 33455 67788888777765433
Q ss_pred ccccc-----CCCccCeEEEeccccCCCc---ccccCCCCccccEEeecccCCcceE-----EEccCcc-ccccEEEEee
Q 045751 376 MPTLE-----KLPLLQVLKLKKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEW-----TMGTGAM-PKLECLIIDP 441 (492)
Q Consensus 376 ~~~l~-----~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l-~~L~~L~l~~ 441 (492)
...+. ..+.|+.|++++|.+++.. +......+++|+.+++++| .++.. ...+... +.|+.+++.+
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 32222 2467888888877775332 1223445577888888887 44322 2223344 6777777776
Q ss_pred cC
Q 045751 442 CA 443 (492)
Q Consensus 442 c~ 443 (492)
++
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 65
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-12 Score=140.17 Aligned_cols=201 Identities=21% Similarity=0.154 Sum_probs=141.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc--CCCCc-hhhccccccCEEEccCC-CCccCchhHHhcC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV--LSQLP-SGIENLFFLRYLKLNIP-SLKSLPSSFLSSI 235 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--l~~l~-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~~l 235 (492)
....|.+.+.++.... . ..-..++.|++|-+.+|. +..++ +.|..++.|++||+++| .+.++|..+ +.+
T Consensus 522 ~~~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GEL 594 (889)
T ss_pred hhheeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhh
Confidence 6788999998887752 1 222345579999999986 55555 55788999999999976 566999999 999
Q ss_pred CCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-----CCccchhhhCCCcccceE
Q 045751 236 SNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-----PRCCTPDILGRLPNLRKL 310 (492)
Q Consensus 236 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-----~~~~~~~~l~~l~~L~~L 310 (492)
.+|++|+++++.+..+|.+++++.+|.+|++..+.-...+|.....+++|+++.+.. ....+.+ +..+.+|+.+
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~l 673 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENL 673 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhh
Confidence 999999999999999999999999999999998876666666666699999998864 2334455 6777777777
Q ss_pred EeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC
Q 045751 311 RIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME 373 (492)
Q Consensus 311 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~ 373 (492)
.+.... . .+...+..++.|..+...---.....+.+...+..+ .+|+.|.+.+|.+..
T Consensus 674 s~~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 674 SITISS---V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISE 731 (889)
T ss_pred eeecch---h-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCch
Confidence 776542 1 222223333333322221000012333444356667 788888888887643
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=3.5e-13 Score=123.79 Aligned_cols=253 Identities=18% Similarity=0.203 Sum_probs=142.4
Q ss_pred hHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCC---CCc-cCchhH------HhcCCCccEEecC
Q 045751 180 DCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIP---SLK-SLPSSF------LSSISNLYTLDMP 244 (492)
Q Consensus 180 ~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~---~i~-~lp~~~------~~~l~~L~~L~L~ 244 (492)
........+..+..++|+||.+. .+.+.+.+.++|+.-++++- +.. ++|+.+ ...+++|++||||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34455566677777777777665 33445556667777766652 122 555433 1456788888888
Q ss_pred CCcc-----cchHHHhhcccccccccccccccCCCCCccccC-CcccceeecCCCCccchhhhCCCcccceEEeeecc--
Q 045751 245 FSYI-----HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL-- 316 (492)
Q Consensus 245 ~~~l-----~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-- 316 (492)
+|-+ ..+-..+.++..|++|.|.+|.+...--..++. |..|... .. .+.-+.|+++....|+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~---------kk-~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN---------KK-AASKPKLRVFICGRNRLE 170 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH---------hc-cCCCcceEEEEeeccccc
Confidence 8833 233344777888888888888763222222222 2222211 11 5566778888888775
Q ss_pred CcchhhHHHHhhcCCCCCeEEeecCC-CCCCccEEEeecCCCCCCceEEEEecccCCCCC----cccccCCCccCeEEEe
Q 045751 317 SNNQSLLSKSLYKLSSLESLKLVNES-KMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP----MPTLEKLPLLQVLKLK 391 (492)
Q Consensus 317 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~l~ 391 (492)
+.....+...+...+.|+.+.++.+. ..+...-+...+..+ ++|+.|+|.+|.++... ...+..+|+|+.|+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 33344555666666777777776522 111111111134455 77777777777764432 2344566777777777
Q ss_pred ccccCCCccc----ccCCCCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCC
Q 045751 392 KNSYLGRKLT----CGSHGFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAY 444 (492)
Q Consensus 392 ~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~ 444 (492)
+|.+...... .....+|+|+.|.+.+| .++ .+.......|.|+.|++++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7766554311 11234677777777776 333 1122244567777777777765
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.2e-12 Score=120.72 Aligned_cols=242 Identities=20% Similarity=0.191 Sum_probs=163.6
Q ss_pred CchhhccccccCEEEccCCCCccCch--hHHhcCCCccEEecCCC---cccchHHHhhcccccccccccccccCCCCCcc
Q 045751 204 LPSGIENLFFLRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFS---YIHHTADVFWEMNKLRHLNFGLFTLPAYPRND 278 (492)
Q Consensus 204 l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~---~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~ 278 (492)
+...=.++.+|+...|.++.+...+. .. ..|++++.|||+.| ++..+-....++++|+.|+++.|.+.......
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 33334567788888888888876663 55 78999999999999 44455555788999999999998763211110
Q ss_pred ccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCC
Q 045751 279 CGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFP 358 (492)
Q Consensus 279 ~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp 358 (492)
. -..+++|+.|.++.|. .....+...+..+|+|+.|.+.++. .+-.-......+
T Consensus 192 ------------------~---~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~---~~~~~~~~~~i~- 245 (505)
T KOG3207|consen 192 ------------------T---TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE---IILIKATSTKIL- 245 (505)
T ss_pred ------------------c---hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc---ccceecchhhhh-
Confidence 0 1245677888888884 3345555666677888888887531 000000022234
Q ss_pred CCceEEEEecccCCC-CCcccccCCCccCeEEEeccccCCCccccc-----CCCCccccEEeecccCCcceEEE--ccCc
Q 045751 359 PSLTHLSFSNTELME-DPMPTLEKLPLLQVLKLKKNSYLGRKLTCG-----SHGFPKLKVLHLKSMLWLEEWTM--GTGA 430 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~--~~~~ 430 (492)
..|++|+|++|.+.. ......+.+|.|+.|+++.+.+.+...+.. ...|++|++|.+..| .+.+|+. .+..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRT 324 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhc
Confidence 789999999998633 344667899999999999998876554433 467999999999998 6666654 3567
Q ss_pred cccccEEEEeecCCcCc----cchhccCCCCCcEEEecCCCHHHHHH
Q 045751 431 MPKLECLIIDPCAYLKR----LPKQLWSVKRFKKLELWRPQPELRQK 473 (492)
Q Consensus 431 l~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~c~~~~~~~ 473 (492)
+++|+.|.+..++..+. --..++.+++|..|+=..|.+..+.+
T Consensus 325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~ 371 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRD 371 (505)
T ss_pred cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhh
Confidence 88889998887766541 11245667777777666665444443
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.15 E-value=4.1e-12 Score=119.36 Aligned_cols=290 Identities=16% Similarity=0.138 Sum_probs=166.0
Q ss_pred CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc-CC--CCchhhccccccCEEEccCC-CCccC-chhHHhcC
Q 045751 161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV-LS--QLPSGIENLFFLRYLKLNIP-SLKSL-PSSFLSSI 235 (492)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~--~l~~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~~l 235 (492)
..|+.|.+.++.... ......+..++++++.|.+.+|. ++ .+-..-..+++|++|++..| .++.. -..+...+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 467777777766542 23455566778888888887776 33 22222245777888888773 44421 12222567
Q ss_pred CCccEEecCCC-cccc--hHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEe
Q 045751 236 SNLYTLDMPFS-YIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRI 312 (492)
Q Consensus 236 ~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l 312 (492)
++|++|++++| .++. +......+..++.+.+.+|.-.+ ...+...-+.+..+.++++
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------------------le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------------------LEALLKAAAYCLEILKLNL 275 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------------------HHHHHHHhccChHhhccch
Confidence 88888888887 4432 22334445555555554442110 0000000223333444444
Q ss_pred eeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-e-cCCCCCCceEEEEeccc-CCCCCccccc-CCCccCeE
Q 045751 313 HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-D-EYQFPPSLTHLSFSNTE-LMEDPMPTLE-KLPLLQVL 388 (492)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~-~~~lp~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L 388 (492)
..|..-....+...-..+..|+.|+.+ .+.++....+ . ..++ .+|+.|.++.|+ +++.....++ +++.|+.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s---~~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYS---SCTDITDEVLWALGQHC-HNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhccc---CCCCCchHHHHHHhcCC-CceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 444211122222223344555666555 3444333332 1 2245 778888888877 4444455554 78888888
Q ss_pred EEeccccCCCc-ccccCCCCccccEEeecccCCcceE-----EEccCccccccEEEEeecCCcC-ccchhccCCCCCcEE
Q 045751 389 KLKKNSYLGRK-LTCGSHGFPKLKVLHLKSMLWLEEW-----TMGTGAMPKLECLIIDPCAYLK-RLPKQLWSVKRFKKL 461 (492)
Q Consensus 389 ~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L 461 (492)
++.++...... +.....+++.|+.|.+++|..++.. ...-.++..|+.+.+++|+.+. ..-+.+..+++|+++
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 88877643322 3333457888999999988666533 3334567789999999998775 344567788899999
Q ss_pred EecCCCHHHHHHhcc
Q 045751 462 ELWRPQPELRQKLRD 476 (492)
Q Consensus 462 ~l~~c~~~~~~~~~~ 476 (492)
++.+|..-..+.+..
T Consensus 432 ~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISR 446 (483)
T ss_pred eeechhhhhhhhhHH
Confidence 999988555554443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.2e-10 Score=100.56 Aligned_cols=129 Identities=24% Similarity=0.279 Sum_probs=39.3
Q ss_pred cCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHh-hcccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVF-WEMNKLRHL 264 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l~~L~~L 264 (492)
+...++.|+|.+|.|+.+.. ++ .+.+|+.|++++|.|+.++ .+ ..+++|++|++++|.++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44456777777777665432 43 4566777777777777664 34 66777777777777776665444 356777777
Q ss_pred cccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC-cchhhHHHHhhcCCCCCeEEee
Q 045751 265 NFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS-NNQSLLSKSLYKLSSLESLKLV 339 (492)
Q Consensus 265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~L~~L~l~ 339 (492)
++++|.+.. + ..+.. ++.+++|+.|++.+|.. .....-...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~-----------l---------~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISD-----------L---------NELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---S-----------C---------CCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCC-----------h---------HHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777766531 1 11122 55666677777776631 1112223445556666666543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=4.5e-12 Score=123.38 Aligned_cols=171 Identities=21% Similarity=0.224 Sum_probs=100.0
Q ss_pred CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEE
Q 045751 162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTL 241 (492)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L 241 (492)
.....+++.|... ..+..+..|-.|..+.|+.|.+..+|..++.+..|.+|+++.|++..+|..+ +.|+ |+.|
T Consensus 76 dt~~aDlsrNR~~-----elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvl 148 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-----ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVL 148 (722)
T ss_pred chhhhhccccccc-----cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeE
Confidence 3344555555544 3445555566666667777777777777777777777777777777777776 5555 7777
Q ss_pred ecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchh
Q 045751 242 DMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQS 321 (492)
Q Consensus 242 ~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 321 (492)
-+++|+++.+|..++.+..|.+||.+.|.+ ..+|.. ++++.+|+.|.++.| ...
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq----------------------l~~l~slr~l~vrRn---~l~ 202 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ----------------------LGYLTSLRDLNVRRN---HLE 202 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhh-hhchHH----------------------hhhHHHHHHHHHhhh---hhh
Confidence 777777777777777666777777776665 234444 444444444444443 344
Q ss_pred hHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccC
Q 045751 322 LLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTEL 371 (492)
Q Consensus 322 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l 371 (492)
.+|..+..+ .|..||++ |.++..+++.+.++ ..|++|-|.+|.+
T Consensus 203 ~lp~El~~L-pLi~lDfS----cNkis~iPv~fr~m-~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFS----CNKISYLPVDFRKM-RHLQVLQLENNPL 246 (722)
T ss_pred hCCHHHhCC-ceeeeecc----cCceeecchhhhhh-hhheeeeeccCCC
Confidence 444444422 24444444 44555555555555 5555555555554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=5.9e-10 Score=111.61 Aligned_cols=194 Identities=24% Similarity=0.261 Sum_probs=126.0
Q ss_pred EEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccc-ccCEEEccCCCCccCchhHHhcCCCccEEec
Q 045751 165 SLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLF-FLRYLKLNIPSLKSLPSSFLSSISNLYTLDM 243 (492)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L 243 (492)
.+.+..+... .....+...+.+..|++.++.++.++.....+. +|+.|++++|.+..+|..+ +.+++|+.|++
T Consensus 97 ~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLR-----SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDL 170 (394)
T ss_pred eeeccccccc-----cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hcccccccccc
Confidence 4666666552 223444555889999999999998888888775 8999999999999988777 89999999999
Q ss_pred CCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhH
Q 045751 244 PFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLL 323 (492)
Q Consensus 244 ~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 323 (492)
++|.+..+|...+.+++|+.|++++|.+. .+|..+.....|. +|.+++| .....
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~----------------------~l~~~~N---~~~~~ 224 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE----------------------ELDLSNN---SIIEL 224 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh----------------------hhhhcCC---cceec
Confidence 99999999887778899999999988873 4444433333344 4444443 12222
Q ss_pred HHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751 324 SKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG 397 (492)
Q Consensus 324 ~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 397 (492)
+..+..+.++..+.+.. ..+..+.-.++.+ +++++|++++|.+..... ++.+.+++.|+++++.+..
T Consensus 225 ~~~~~~~~~l~~l~l~~----n~~~~~~~~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 225 LSSLSNLKNLSGLELSN----NKLEDLPESIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred chhhhhcccccccccCC----ceeeeccchhccc-cccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 23333333333333221 1111111134455 667777777777644333 6777777777777766554
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=6.9e-11 Score=108.90 Aligned_cols=238 Identities=20% Similarity=0.186 Sum_probs=145.3
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCch-------hhccccccCEEEccCCCCc-c-
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLPS-------GIENLFFLRYLKLNIPSLK-S- 226 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~i~-~- 226 (492)
...+..+++++|.+...........+.+.++|+..+++.--.. .+|+ .+..+++|++|+||+|-+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 7788999999998863334577888899999999999876321 4443 3446779999999999876 2
Q ss_pred ---CchhHHhcCCCccEEecCCCcccchHHH--------------hhcccccccccccccccCCCCCccccCCcccceee
Q 045751 227 ---LPSSFLSSISNLYTLDMPFSYIHHTADV--------------FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFIS 289 (492)
Q Consensus 227 ---lp~~~~~~l~~L~~L~L~~~~l~~lp~~--------------~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~ 289 (492)
+-.-+ .++..|++|.|.+|.+...... +..-++|+.+..++|.+-..
T Consensus 109 ~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~--------------- 172 (382)
T KOG1909|consen 109 IRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG--------------- 172 (382)
T ss_pred hHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------------
Confidence 22334 7899999999999976543321 22334555555555544211
Q ss_pred cCCCCccchhhhCCCcccceEEeeecc--CcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe--ecCCCCCCceEEE
Q 045751 290 ALHPRCCTPDILGRLPNLRKLRIHGDL--SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL--DEYQFPPSLTHLS 365 (492)
Q Consensus 290 ~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~ 365 (492)
........++..+.|+.+.+..|. ......+...+..+++|+.|||..+. +..--...+ .+..+ ++|+.|+
T Consensus 173 ---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~-~~L~El~ 247 (382)
T KOG1909|consen 173 ---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW-PHLRELN 247 (382)
T ss_pred ---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc-chheeec
Confidence 111222334555556666665554 12223444555566666666665311 000000000 23344 6788888
Q ss_pred EecccCCCCCcccc-----cCCCccCeEEEeccccCCCc---ccccCCCCccccEEeeccc
Q 045751 366 FSNTELMEDPMPTL-----EKLPLLQVLKLKKNSYLGRK---LTCGSHGFPKLKVLHLKSM 418 (492)
Q Consensus 366 L~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~ 418 (492)
+++|.+.......+ ...|.|+.|.+.+|.++... +.......|.|+.|.|++|
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 88888765544333 25788888888888776432 2223455788889999888
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.3e-10 Score=103.19 Aligned_cols=202 Identities=18% Similarity=0.159 Sum_probs=114.1
Q ss_pred CCCeeEEEeecCCCCCCCchh----HHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch------
Q 045751 160 NLYLHSLLCLSSESHHLDPLD----CEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS------ 229 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~------ 229 (492)
+.+|..|.+++.......+.+ .+-.+.-+++|..+.++.|.-..+-.-...=+.|+++.++++.+...|.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence 788888888876554322222 2223345677778888877644333322233567788777765543221
Q ss_pred ------------------hHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751 230 ------------------SFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL 291 (492)
Q Consensus 230 ------------------~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~ 291 (492)
.+ ..++.|+.+||++|.++.+..++.-+|+++.|++++|.+.
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------------------- 320 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSA-DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------------------- 320 (490)
T ss_pred hcCccCCCCCccCCceEEec-chHhhhhhccccccchhhhhhhhhhccceeEEecccccee-------------------
Confidence 11 2345577777777777766666666677777777766542
Q ss_pred CCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccC
Q 045751 292 HPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTEL 371 (492)
Q Consensus 292 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l 371 (492)
.+.. ++.+++|+.|++++| ....+.. |-.++ -++++|.|++|.+
T Consensus 321 ----~v~n-La~L~~L~~LDLS~N---~Ls~~~G---------------------------wh~KL-GNIKtL~La~N~i 364 (490)
T KOG1259|consen 321 ----TVQN-LAELPQLQLLDLSGN---LLAECVG---------------------------WHLKL-GNIKTLKLAQNKI 364 (490)
T ss_pred ----eehh-hhhcccceEeecccc---hhHhhhh---------------------------hHhhh-cCEeeeehhhhhH
Confidence 1222 666677777777776 2222222 22334 5566666666654
Q ss_pred CCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751 372 MEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML 419 (492)
Q Consensus 372 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 419 (492)
+....++++-+|..|++.+|++....-...++++|.|+.|.+.+|+
T Consensus 365 --E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 365 --ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 2233455566666666666665443334445556666666665553
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=5.1e-10 Score=96.63 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=40.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
+.+++.|++.++.+. .+ ..+. .+.+|++|++++|.++.++. +..+++|+.|++++|.|+.+++.+...+++|
T Consensus 18 ~~~~~~L~L~~n~I~-----~I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-----TI-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-----cc-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 556788888888875 22 2333 57788899999998887753 7778889999999999988876653468899
Q ss_pred cEEecCCCcccchH--HHhhcccccccccccccccC
Q 045751 239 YTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLP 272 (492)
Q Consensus 239 ~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~ 272 (492)
++|++++|.+..+. ..+..+++|+.|++.+|.+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999988665443 33677888888888888764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-10 Score=109.76 Aligned_cols=206 Identities=18% Similarity=0.144 Sum_probs=117.2
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC---CCchhhccccccCEEEccCCCCccCchh-HHhcC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS---QLPSGIENLFFLRYLKLNIPSLKSLPSS-FLSSI 235 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~~l 235 (492)
.++||.+.+.++.... -........|++++.|||+.|-+. .+-.-...+++|+.|+++.|++....++ .-..+
T Consensus 120 ~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 7788888888877652 011146677888888888888765 2334456788888888888877633222 11357
Q ss_pred CCccEEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEee
Q 045751 236 SNLYTLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIH 313 (492)
Q Consensus 236 ~~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~ 313 (492)
++|+.|.++.|.+ ..+-.....+|+|+.|++..|... +.. ... ...+..|+.|+++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~-------------------~~~-~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIK-------------------ATS-TKILQTLQELDLS 254 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--cee-------------------cch-hhhhhHHhhcccc
Confidence 7888888888855 344444566778888888777421 000 001 3445678888888
Q ss_pred eccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-------ecCCCCCCceEEEEecccCCCC-CcccccCCCcc
Q 045751 314 GDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-------DEYQFPPSLTHLSFSNTELMED-PMPTLEKLPLL 385 (492)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-------~~~~lp~~L~~L~L~~~~l~~~-~~~~l~~l~~L 385 (492)
+|. .........++.++.|+.|+++. ..+.++.. ....+ ++|++|++..|.+.++ ....+..+++|
T Consensus 255 ~N~-li~~~~~~~~~~l~~L~~Lnls~----tgi~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 255 NNN-LIDFDQGYKVGTLPGLNQLNLSS----TGIASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred CCc-ccccccccccccccchhhhhccc----cCcchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchh
Confidence 873 11111123455566666666653 12222211 11234 5566666666655332 22334445555
Q ss_pred CeEEEeccccC
Q 045751 386 QVLKLKKNSYL 396 (492)
Q Consensus 386 ~~L~l~~~~~~ 396 (492)
+.|.+..|.+.
T Consensus 329 k~l~~~~n~ln 339 (505)
T KOG3207|consen 329 KHLRITLNYLN 339 (505)
T ss_pred hhhhccccccc
Confidence 55555544443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.7e-11 Score=107.00 Aligned_cols=182 Identities=22% Similarity=0.205 Sum_probs=89.1
Q ss_pred CccEEecCCCcc--cchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeee
Q 045751 237 NLYTLDMPFSYI--HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHG 314 (492)
Q Consensus 237 ~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 314 (492)
.||+|||+...+ ..+...++++.+|+.|.+.++.+...+... +++-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~----------------------iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT----------------------IAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH----------------------Hhccccceeecccc
Confidence 478888888755 344555777888888877777764444333 33344444444444
Q ss_pred ccCcchhhHHHHhhcCCCCCeEEeec-CCCCCCccEEEeecCCCCCCceEEEEeccc--CCCCCcccc-cCCCccCeEEE
Q 045751 315 DLSNNQSLLSKSLYKLSSLESLKLVN-ESKMPRLSKIVLDEYQFPPSLTHLSFSNTE--LMEDPMPTL-EKLPLLQVLKL 390 (492)
Q Consensus 315 ~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~l 390 (492)
|.......+.-.+.+|+.|.+|+++| +..-+..+. .+....++|+.|+|+++. +.......+ ..+|+|..|+|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 42222222233344444445555444 110000000 111112555666666554 111222222 35666666666
Q ss_pred eccccCCCcccccCCCCccccEEeecccCCcc-eEEEccCccccccEEEEeecC
Q 045751 391 KKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-EWTMGTGAMPKLECLIIDPCA 443 (492)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~ 443 (492)
++|..........+..|+.|++|.++.|..+. +--..+...|+|..|++.+|-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 65543332333334556666666666665443 112235566666666666653
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.9e-10 Score=111.03 Aligned_cols=171 Identities=22% Similarity=0.185 Sum_probs=133.8
Q ss_pred EEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCC
Q 045751 145 TANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPS 223 (492)
Q Consensus 145 sl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~ 223 (492)
.+.-+...+++.+.- +..|.++.+..|.+. ..+..+.++..|.+|+|+.|.+..+|..++.|+ |+.|-+++|+
T Consensus 81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 81 DLSRNRFSELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hccccccccCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 333244445554444 889999999999886 678889999999999999999999999888775 9999999999
Q ss_pred CccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhh
Q 045751 224 LKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDIL 301 (492)
Q Consensus 224 i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l 301 (492)
++.+|..+ +.+..|..||.+.|.+..+|..++.+.+|+.|++..|++ ..+|..++.| .|..|+++. ...++.. |
T Consensus 155 l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El~~L-pLi~lDfScNkis~iPv~-f 230 (722)
T KOG0532|consen 155 LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSL-PLIRLDFSCNKISYLPVD-F 230 (722)
T ss_pred cccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCC-ceeeeecccCceeecchh-h
Confidence 99999999 999999999999999999999999999999999999987 4667666643 355566652 3334444 6
Q ss_pred CCCcccceEEeeeccCcchhhHHHHhh
Q 045751 302 GRLPNLRKLRIHGDLSNNQSLLSKSLY 328 (492)
Q Consensus 302 ~~l~~L~~L~l~~~~~~~~~~~~~~l~ 328 (492)
.+|+.|++|-+.+| ....-|+.+.
T Consensus 231 r~m~~Lq~l~LenN---PLqSPPAqIC 254 (722)
T KOG0532|consen 231 RKMRHLQVLQLENN---PLQSPPAQIC 254 (722)
T ss_pred hhhhhheeeeeccC---CCCCChHHHH
Confidence 77777777777665 4444555544
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=4.5e-09 Score=105.27 Aligned_cols=148 Identities=25% Similarity=0.289 Sum_probs=112.5
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCC-cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFK-FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.+.+..|.+.++.+. ..+.....++ +|+.|++++|.+..+|..++.+++|+.|++++|.+.++|... +.+++|
T Consensus 115 ~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNL 188 (394)
T ss_pred ccceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhh
Confidence 578999999999886 3445555664 999999999999999888999999999999999999999887 799999
Q ss_pred cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC-cc-chhhhCCCcccceEEeeec
Q 045751 239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR-CC-TPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~-~~-~~~~l~~l~~L~~L~l~~~ 315 (492)
+.|++++|.+..+|..+.....|+.+.+++|.. ...+..+.++.++..+.+.+.. .. +.. ++.+++++.|++++|
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccch-hccccccceeccccc
Confidence 999999999999999777778899999999853 2444455555555555443211 11 222 555555666666555
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=9e-09 Score=72.99 Aligned_cols=59 Identities=32% Similarity=0.423 Sum_probs=40.4
Q ss_pred CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc
Q 045751 189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY 247 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~ 247 (492)
++|++|++++|.++.+| ..|..+++|++|++++|.+..+++..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45667777777776665 455667777777777777776666666777777777777664
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3e-10 Score=102.42 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=123.7
Q ss_pred hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe--ecCCCCCCceEEEEecccCCCCCccc
Q 045751 301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL--DEYQFPPSLTHLSFSNTELMEDPMPT 378 (492)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~ 378 (492)
+..|.+|+.|.+.++ ...+.+...+++-.+|+.|+++ .|..+..-.+ .+.+| ..|.+|+|+.|.+..+....
T Consensus 206 Ls~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnls---m~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLS---MCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccc---cccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhH
Confidence 788999999999998 6778888899999999999999 4666665443 56788 99999999999876554433
Q ss_pred c-c-CCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcce-EEEccCccccccEEEEeecCCcCccch---
Q 045751 379 L-E-KLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLEE-WTMGTGAMPKLECLIIDPCAYLKRLPK--- 450 (492)
Q Consensus 379 l-~-~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~lp~--- 450 (492)
+ . --++|..|+++|+. +....+......+|+|..|+|++|..++. ....+..++.|+.|.++.|..+. |.
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~ 357 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLL 357 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHee
Confidence 2 2 34789999999874 22222223346799999999999987773 33456789999999999998553 43
Q ss_pred hccCCCCCcEEEecCCCHH
Q 045751 451 QLWSVKRFKKLELWRPQPE 469 (492)
Q Consensus 451 ~l~~l~~L~~L~l~~c~~~ 469 (492)
.+...|+|.+|++.||-.+
T Consensus 358 ~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeccCcceEEEEeccccCc
Confidence 3578899999999998644
No 40
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.68 E-value=5.7e-09 Score=99.72 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=57.3
Q ss_pred HHHHHHhhcccCChhhHHHHHhhhcccch------------------------HHHHHHHHhhhcccccccccce-----
Q 045751 4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI------------------------EIVTSLLRDYECEIAGHLVNII----- 54 (492)
Q Consensus 4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~------------------------~i~~~l~~sy~~~l~~~~k~~~----- 54 (492)
+.++++|+++|+|+|||++++|+.|+.+. .++.++..||+. +|++.|+||
T Consensus 182 ~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~-L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 182 EDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDS-LPDELRRCFLYLSI 260 (287)
T ss_dssp CTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHS-SHTCCHHHHHHGGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhc-CCccHHHHHhhCcC
Confidence 56899999999999999999999996532 478889999995 888888775
Q ss_pred -----eecHHHHHHHHHHhCCCC
Q 045751 55 -----VEEEEMIYQLWIAEGFIP 72 (492)
Q Consensus 55 -----~~~~~~Li~~wia~gf~~ 72 (492)
.|+++.++++|+++||+.
T Consensus 261 f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-HHTC
T ss_pred CCCCceECHHHHHHHHHHCCCCc
Confidence 689999999999999986
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=2.6e-09 Score=100.80 Aligned_cols=299 Identities=16% Similarity=0.102 Sum_probs=188.0
Q ss_pred CCeeEEEEecCCC-Cccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc-CC-CCch-hhccc
Q 045751 139 KMIKRLTANVNLS-ELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV-LS-QLPS-GIENL 211 (492)
Q Consensus 139 ~~~r~lsl~~~~~-~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-l~-~l~~-~~~~l 211 (492)
..++.+++.+... .......+ +|+++.|.+.++... ++......-..++.|+.|++..|. ++ .... -...+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 4567788773222 12222233 999999999988754 344556666889999999999965 65 2223 34578
Q ss_pred cccCEEEccCCC-Cc--cCchhHHhcCCCccEEecCCCc---ccchHHHhhcccccccccccccccCCCCCccccCCccc
Q 045751 212 FFLRYLKLNIPS-LK--SLPSSFLSSISNLYTLDMPFSY---IHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL 285 (492)
Q Consensus 212 ~~L~~L~l~~~~-i~--~lp~~~~~~l~~L~~L~L~~~~---l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 285 (492)
++|.||+++++. |. .+..-. .++..++.+.+++|. +..+-..-..+.-+..+++.+|...
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l------------- 281 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL------------- 281 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc-------------
Confidence 999999999873 44 333333 778889999888882 2222222233444555555555321
Q ss_pred ceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecC-CCCCCceE
Q 045751 286 NFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEY-QFPPSLTH 363 (492)
Q Consensus 286 ~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~ 363 (492)
+......+-..+..|+.|+.+++.+.....+.+--.++.+|+.|.+. +|.++..-.+ .++ ++ +.|+.
T Consensus 282 -------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~---~c~~fsd~~ft~l~rn~-~~Le~ 350 (483)
T KOG4341|consen 282 -------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS---GCQQFSDRGFTMLGRNC-PHLER 350 (483)
T ss_pred -------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc---ccchhhhhhhhhhhcCC-hhhhh
Confidence 11111121455677888888887532222233334566888888887 4665443332 222 45 78899
Q ss_pred EEEecccCCC-C-CcccccCCCccCeEEEeccccC-CCc---ccccCCCCccccEEeecccCCcceE-EEccCccccccE
Q 045751 364 LSFSNTELME-D-PMPTLEKLPLLQVLKLKKNSYL-GRK---LTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLEC 436 (492)
Q Consensus 364 L~L~~~~l~~-~-~~~~l~~l~~L~~L~l~~~~~~-~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~ 436 (492)
+++..|...- . ....-.+++.|+.|.+++|... ++. +.....+...|+.+.+++|+.+++- -..+..+++|+.
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 9998887422 2 2223358999999999988643 331 1222356778999999999888733 234678899999
Q ss_pred EEEeecCCcCc--cchhccCCCCCcEEEec
Q 045751 437 LIIDPCAYLKR--LPKQLWSVKRFKKLELW 464 (492)
Q Consensus 437 L~l~~c~~l~~--lp~~l~~l~~L~~L~l~ 464 (492)
+++.+|..... +...-.++|+++.....
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 99999987763 33344677887776554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=8.2e-09 Score=73.18 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=54.6
Q ss_pred cccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccccccc
Q 045751 212 FFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 212 ~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~ 271 (492)
++|++|++++|.+..+|...|.++++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999998888999999999999999988875 589999999999999864
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=5.8e-09 Score=94.35 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
.|.+|.|+++.|.+. .. ..++.+++|..|||++|.++.+...-.++-|.+.|.++.|.|+.+. .+ +++.+|.
T Consensus 306 ~Pkir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL-~KLYSLv 377 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GL-RKLYSLV 377 (490)
T ss_pred ccceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hh-Hhhhhhe
Confidence 445555555544443 11 1244444555555555544443333334444445555555444442 23 4555555
Q ss_pred EEecCCCcccchH--HHhhccccccccccccccc
Q 045751 240 TLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 240 ~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~ 271 (492)
.||+++|++..+. .+|+++|.|+++.|.+|.+
T Consensus 378 nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 378 NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 5555555554443 2355555555555555544
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=7.4e-08 Score=101.37 Aligned_cols=90 Identities=24% Similarity=0.375 Sum_probs=66.7
Q ss_pred EEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhccccccccccc
Q 045751 191 LRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFG 267 (492)
Q Consensus 191 L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~ 267 (492)
++.|+|++|.++ .+|..++.+++|+.|+|++|.+. .+|..+ +.+++|+.|+|++|.+. .+|..++++++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 677777777776 67777777777777777777776 677766 77777777777777664 567777777777777777
Q ss_pred ccccCCCCCccccC
Q 045751 268 LFTLPAYPRNDCGS 281 (492)
Q Consensus 268 ~~~~~~~~p~~~~~ 281 (492)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 77777777766554
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=1.3e-08 Score=90.93 Aligned_cols=249 Identities=17% Similarity=0.147 Sum_probs=134.7
Q ss_pred ccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCc----cCchhH------HhcCCCccEEecCCCcc--
Q 045751 186 KMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLK----SLPSSF------LSSISNLYTLDMPFSYI-- 248 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~----~lp~~~------~~~l~~L~~L~L~~~~l-- 248 (492)
..+..+..++|+||.|. .+...|.+-.+|+.-+++.-... ++++.+ .-+|++|+..+||+|.+
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34556666666666554 23344444555665555542111 333322 14667777777777733
Q ss_pred ---cchHHHhhcccccccccccccccCCCCCccccC-CcccceeecCCCCccchhhhCCCcccceEEeeecc-C-cchhh
Q 045751 249 ---HHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL-S-NNQSL 322 (492)
Q Consensus 249 ---~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-~~~~~ 322 (492)
..+-+.|++-+.|.||.+++|.+....-..+++ +..|-.. .. .+.-+.|+...+..|+ . .....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n---------KK-aa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN---------KK-AADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH---------hh-hccCCCceEEEeccchhccCcHHH
Confidence 122244666677777777777652211122222 1111111 11 4455667777666664 1 12222
Q ss_pred HHHHhhcCCCCCeEEeecCC-CCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcc----cccCCCccCeEEEeccccC
Q 045751 323 LSKSLYKLSSLESLKLVNES-KMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMP----TLEKLPLLQVLKLKKNSYL 396 (492)
Q Consensus 323 ~~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~ 396 (492)
....+.+-.+|+.+.+..+. .+..+..|-. .+..+ .+|+.|+|..|.++..... .+..++.|+.|.+..|-++
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 22334444566777666532 1111111111 23345 8899999999987654433 3457888999999888776
Q ss_pred CCcccc-----cCCCCccccEEeecccCCcce-EE------EccCccccccEEEEeecCCc
Q 045751 397 GRKLTC-----GSHGFPKLKVLHLKSMLWLEE-WT------MGTGAMPKLECLIIDPCAYL 445 (492)
Q Consensus 397 ~~~~~~-----~~~~~~~L~~L~l~~~~~l~~-l~------~~~~~l~~L~~L~l~~c~~l 445 (492)
...... .-..+|+|..|...+|..-.. +. ..-+++|-|..|.+++|...
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 554221 123578888888888743222 21 12368899999999988754
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=9.7e-08 Score=86.50 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=45.4
Q ss_pred HhccCCcEEEEEecCCcCC---CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCC--cccchHHHhhcc
Q 045751 184 ICKMFKFLRVLDLGSLVLS---QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFS--YIHHTADVFWEM 258 (492)
Q Consensus 184 ~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~--~l~~lp~~~~~l 258 (492)
+-..+.+++.|||.+|.|+ .+..-+.++++|++|+++.|.+...-...-..+.+|++|-|.++ .++.....+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3345555666666666555 22233345666666666665544111111013456666666665 334444556666
Q ss_pred cccccccccccc
Q 045751 259 NKLRHLNFGLFT 270 (492)
Q Consensus 259 ~~L~~L~L~~~~ 270 (492)
|.++.|+++.|.
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 677777666664
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3.4e-07 Score=96.44 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=90.7
Q ss_pred CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCCcc
Q 045751 162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLY 239 (492)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~ 239 (492)
.++.|++.++... ...+..+.++++|+.|+|++|.+. .+|..++.+++|++|++++|.+. .+|..+ +++++|+
T Consensus 419 ~v~~L~L~~n~L~----g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLR----GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLR 493 (623)
T ss_pred EEEEEECCCCCcc----ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCC
Confidence 4888999988775 255677899999999999999998 89999999999999999999999 889888 9999999
Q ss_pred EEecCCCcc-cchHHHhhcc-cccccccccccccC
Q 045751 240 TLDMPFSYI-HHTADVFWEM-NKLRHLNFGLFTLP 272 (492)
Q Consensus 240 ~L~L~~~~l-~~lp~~~~~l-~~L~~L~L~~~~~~ 272 (492)
+|++++|.+ ..+|..++.+ .++..+++.+|...
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 999999977 4788877764 46777888877543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=2.9e-08 Score=99.74 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=55.0
Q ss_pred HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751 183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262 (492)
Q Consensus 183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~ 262 (492)
..+..+++|..|++.+|.|..+...+..+++|++|++++|.|+.+.. + ..++.|+.|++++|.+..+.. +..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhh
Confidence 33556666777777777666555545666677777777777766643 2 466667777777776665543 45566666
Q ss_pred cccccccccC
Q 045751 263 HLNFGLFTLP 272 (492)
Q Consensus 263 ~L~L~~~~~~ 272 (492)
.+++++|.+.
T Consensus 166 ~l~l~~n~i~ 175 (414)
T KOG0531|consen 166 LLDLSYNRIV 175 (414)
T ss_pred cccCCcchhh
Confidence 6666666553
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=4.1e-08 Score=98.64 Aligned_cols=243 Identities=23% Similarity=0.269 Sum_probs=134.9
Q ss_pred ccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccc
Q 045751 186 KMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLN 265 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 265 (492)
..+..++.+.+..+.+...-..++.+++|+.|++.+|.|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhhe
Confidence 4556666777888887775566788999999999999999887756 889999999999999988865 78888899999
Q ss_pred ccccccCCCCCccccCCcccceeecCCCCccchhh--hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCC
Q 045751 266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDI--LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESK 343 (492)
Q Consensus 266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 343 (492)
+++|.+.. ..++..+..|+.+++++.....-+. +..+.+++.+.+.+|...... .+..+..+..+++..
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~--- 217 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLD--- 217 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhccc---
Confidence 99998742 2223335555555555322222221 244555555666555210000 011111111111110
Q ss_pred CCCccEEEeecCCCCCC--ceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCc
Q 045751 344 MPRLSKIVLDEYQFPPS--LTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWL 421 (492)
Q Consensus 344 ~~~L~~L~l~~~~lp~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 421 (492)
..+..+. .+..+ .. |+.+++.++.+.. .+..+..++.+..|++..+.+.... .....+.+..+....+...
T Consensus 218 -n~i~~~~-~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 218 -NKISKLE-GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred -ccceecc-Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc---cccccchHHHhccCcchhc
Confidence 1111100 11111 22 6666776666522 2244556666666766666554322 1233444444444444222
Q ss_pred ce---EE-EccCccccccEEEEeecCCcC
Q 045751 422 EE---WT-MGTGAMPKLECLIIDPCAYLK 446 (492)
Q Consensus 422 ~~---l~-~~~~~l~~L~~L~l~~c~~l~ 446 (492)
.. .. ......+.++...+.+++.-.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chhhhhccccccccccccccccccCcccc
Confidence 11 11 114456666666666665443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=6.1e-07 Score=81.44 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=44.9
Q ss_pred CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE--ccCccccccEEEEeecCCcCccch------hcc
Q 045751 382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM--GTGAMPKLECLIIDPCAYLKRLPK------QLW 453 (492)
Q Consensus 382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp~------~l~ 453 (492)
+|++..+.+..|.+....-......+|.+-.|.|+.+ ++.+|.. .+..+|.|..|.+.++|....+.. .++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 4566666666555444333333445555656666654 5554432 345666666666666665543322 246
Q ss_pred CCCCCcEEEecC
Q 045751 454 SVKRFKKLELWR 465 (492)
Q Consensus 454 ~l~~L~~L~l~~ 465 (492)
++++++.|+-+.
T Consensus 277 RL~~v~vLNGsk 288 (418)
T KOG2982|consen 277 RLTKVQVLNGSK 288 (418)
T ss_pred eccceEEecCcc
Confidence 666666665543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.1e-06 Score=55.82 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=17.9
Q ss_pred ccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch
Q 045751 213 FLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT 251 (492)
Q Consensus 213 ~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l 251 (492)
+|++|++++|+|+++|+.+ ++|++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence 4455555555555554444 5555555555555544443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.8e-06 Score=55.21 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=30.9
Q ss_pred CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch
Q 045751 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS 229 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~ 229 (492)
++|++|++++|.|+.+|+.+++|++|++|++++|.|++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888888888778888888888888888876653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=1.6e-06 Score=91.34 Aligned_cols=108 Identities=23% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccC--chhHHhcCCC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSL--PSSFLSSISN 237 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~l--p~~~~~~l~~ 237 (492)
+|.|++|.+.+-... .+.....+.++++|+.||+++++++.+ ..++.|++|+.|.+++-.+..- -..+ -+|++
T Consensus 147 LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK 221 (699)
T ss_pred CcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence 677777777765543 223455666777777777777776655 5566777777777766555521 1233 46777
Q ss_pred ccEEecCCCcccchH---HH----hhcccccccccccccccC
Q 045751 238 LYTLDMPFSYIHHTA---DV----FWEMNKLRHLNFGLFTLP 272 (492)
Q Consensus 238 L~~L~L~~~~l~~lp---~~----~~~l~~L~~L~L~~~~~~ 272 (492)
|++||+|......-+ .. -..+|+|+.||.|++.+.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777777666222111 10 123555666655555443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=5.6e-07 Score=90.93 Aligned_cols=196 Identities=24% Similarity=0.216 Sum_probs=96.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccc-ccCEEEccCCCCc-----------cC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLF-FLRYLKLNIPSLK-----------SL 227 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~i~-----------~l 227 (492)
.+++..|.+-.....+ ..-+-.+..++.||+|.|.+|.+...- .+..+. .|+.|-- .+.+. ++
T Consensus 83 lqkt~~lkl~~~pa~~---pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARD---PTEPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLIC-HNSLDALRHVFASCGGDI 157 (1096)
T ss_pred HhhheeeeecccCCCC---CCCCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhh-hccHHHHHHHHHHhcccc
Confidence 5666666665554431 111455677899999999999875311 111111 1222211 11111 11
Q ss_pred chhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCccc
Q 045751 228 PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNL 307 (492)
Q Consensus 228 p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L 307 (492)
..+. .+..|.+-+.++|.+..+..++.-++.|++|+|++|++.. ... +..++.|
T Consensus 158 ~ns~--~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-----------------------v~~-Lr~l~~L 211 (1096)
T KOG1859|consen 158 SNSP--VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-----------------------VDN-LRRLPKL 211 (1096)
T ss_pred ccch--hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-----------------------hHH-HHhcccc
Confidence 1110 1234555566666665555556666666666666665421 111 4455555
Q ss_pred ceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC-CCcccccCCCcc
Q 045751 308 RKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME-DPMPTLEKLPLL 385 (492)
Q Consensus 308 ~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~-~~~~~l~~l~~L 385 (492)
++|+++.| ....+|.. -..+ +|..|.+++ ..|++|. .+.++ .+|+.|++++|-+.+ .....++.|..|
T Consensus 212 khLDlsyN---~L~~vp~l~~~gc-~L~~L~lrn----N~l~tL~-gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 212 KHLDLSYN---CLRHVPQLSMVGC-KLQLLNLRN----NALTTLR-GIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred cccccccc---hhccccccchhhh-hheeeeecc----cHHHhhh-hHHhh-hhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 55555554 11222211 0111 144444432 1122211 45556 777777777777644 233455667778
Q ss_pred CeEEEeccccC
Q 045751 386 QVLKLKKNSYL 396 (492)
Q Consensus 386 ~~L~l~~~~~~ 396 (492)
+.|.|.||.+-
T Consensus 282 ~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 282 IVLWLEGNPLC 292 (1096)
T ss_pred HHHhhcCCccc
Confidence 88888877653
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=4.7e-06 Score=87.79 Aligned_cols=129 Identities=22% Similarity=0.202 Sum_probs=98.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISN 237 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~ 237 (492)
-.+|+.|++.+.... +..++...-..+|.|+.|.+.+-.+. .+..-..++++|+.||+++++++.+ .++ ++|++
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 678888888886554 45577777788999999999998765 3344456889999999999999988 778 99999
Q ss_pred ccEEecCCCcccchH--HHhhcccccccccccccccCCCC--Ccc---cc-CCcccceeecCC
Q 045751 238 LYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYP--RND---CG-SLENLNFISALH 292 (492)
Q Consensus 238 L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~--p~~---~~-~l~~L~~l~~~~ 292 (492)
|+.|.+++=.+..-. ..+.+|++|+.||+|........ ... .+ .|++|+.|++++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999999887554432 34889999999999976543211 111 11 189999999985
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=2.9e-07 Score=92.92 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751 183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262 (492)
Q Consensus 183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~ 262 (492)
..+.-+++|+.|+|+.|+++... .+..|++|++||+++|.+..+|.---..+. |+.|.+++|.++.+-. +.++.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-ie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-IENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-HHhhhhhh
Confidence 34444555555566655555433 455555566666666555555432101222 5556666655555532 55566666
Q ss_pred ccccccccc
Q 045751 263 HLNFGLFTL 271 (492)
Q Consensus 263 ~L~L~~~~~ 271 (492)
.||+++|-+
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 666655544
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=5.7e-06 Score=74.35 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=79.0
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCc-------hhhccccccCEEEccCCCCc-cC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLP-------SGIENLFFLRYLKLNIPSLK-SL 227 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~l~~L~~L~l~~~~i~-~l 227 (492)
...+..+++++|.+...........+.+-++|++.+++.--.. .++ +.+-+|++|+..+|++|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 7788899999998864344567788888999999998865322 233 44567899999999999887 55
Q ss_pred chhH---HhcCCCccEEecCCCcccchHHH-h-------------hccccccccccccccc
Q 045751 228 PSSF---LSSISNLYTLDMPFSYIHHTADV-F-------------WEMNKLRHLNFGLFTL 271 (492)
Q Consensus 228 p~~~---~~~l~~L~~L~L~~~~l~~lp~~-~-------------~~l~~L~~L~L~~~~~ 271 (492)
|+.+ .++-..|++|.+++|.++.+..+ | .+-|.|+......|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 5432 26778999999999966544321 2 2345666666666654
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=5.5e-06 Score=66.74 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=57.3
Q ss_pred HHhccCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccc
Q 045751 183 KICKMFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL 261 (492)
Q Consensus 183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L 261 (492)
..+.+..+|...+|++|.++.+|+.|. +.+.++.|++++|.|.++|.++ ..++.|+.|+++.|.+...|.-+..+.+|
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhH
Confidence 344555666666777777776666553 3346667777777777777765 77777777777777666666666666666
Q ss_pred cccccccccc
Q 045751 262 RHLNFGLFTL 271 (492)
Q Consensus 262 ~~L~L~~~~~ 271 (492)
-.|+..+|..
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 6666655543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=1.9e-05 Score=76.95 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=91.8
Q ss_pred HHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCC-CCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccc
Q 045751 183 KICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIP-SLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNK 260 (492)
Q Consensus 183 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~ 260 (492)
.-+..+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+ ..+|+.|++++| .+..+|..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------ 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------ 113 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------
Confidence 345667999999999999988883 2 237999999874 566888655 368999999999 77777754
Q ss_pred ccccccccccc--CCCCCccccCCcccceeecCCCC-ccchhhhC--CCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751 261 LRHLNFGLFTL--PAYPRNDCGSLENLNFISALHPR-CCTPDILG--RLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES 335 (492)
Q Consensus 261 L~~L~L~~~~~--~~~~p~~~~~l~~L~~l~~~~~~-~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 335 (492)
|+.|++..+.. .+.+|.+ |+.|.+.+.. ..... +. -.++|+.|++.+|. ...+|..+. .+|+.
T Consensus 114 Le~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~ 181 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQAR-IDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQS 181 (426)
T ss_pred cceEEeCCCCCcccccCcch------Hhheeccccccccccc-cccccCCcccEEEecCCC---cccCccccc--ccCcE
Confidence 55565654432 2345554 3344432100 00000 11 12478888888773 112232222 46666
Q ss_pred EEeecCCCCCCccEEEeecCCCCCCceEEEEecc
Q 045751 336 LKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNT 369 (492)
Q Consensus 336 L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~ 369 (492)
|.++. .....+.+....+|+++ .|++.+|
T Consensus 182 L~ls~----n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 182 ITLHI----EQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred EEecc----cccccccCccccccccc-Eechhhh
Confidence 76652 11222222344555556 6666554
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=8.6e-06 Score=65.67 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccE
Q 045751 161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYT 240 (492)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~ 240 (492)
.+|.+.++++|... +++..+-.+++.+..|++++|.++.+|..+..++.|+.|+++.|.+...|.-+ ..+.+|-.
T Consensus 53 ~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDM 127 (177)
T ss_pred ceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHH
Confidence 45556667777665 35566667788888899999999889988888999999999999999888888 55888888
Q ss_pred EecCCCcccchHHHhhcccccccccccccccCC
Q 045751 241 LDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA 273 (492)
Q Consensus 241 L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~ 273 (492)
||..++....+|-.+..-...-..++.++.+.+
T Consensus 128 Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 128 LDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred hcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 998888777777553322222223444444433
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.73 E-value=9.3e-06 Score=83.56 Aligned_cols=243 Identities=21% Similarity=0.178 Sum_probs=128.5
Q ss_pred HHHHhccCCcEEEEEecCCc-CCC--CchhhccccccCEEEccCC--CCccCc---hhHHhcCCCccEEecCCCc-ccch
Q 045751 181 CEKICKMFKFLRVLDLGSLV-LSQ--LPSGIENLFFLRYLKLNIP--SLKSLP---SSFLSSISNLYTLDMPFSY-IHHT 251 (492)
Q Consensus 181 ~~~~~~~~~~L~~L~L~~~~-l~~--l~~~~~~l~~L~~L~l~~~--~i~~lp---~~~~~~l~~L~~L~L~~~~-l~~l 251 (492)
.......++.|+.|.+.++. ++. +-.....+++|+.|+++++ .+...+ ..+...+++|+.|+++++. ++..
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 33444456777777777764 433 3344556777777777652 111111 1122456777777777774 4322
Q ss_pred H-HHh-hcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhc
Q 045751 252 A-DVF-WEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYK 329 (492)
Q Consensus 252 p-~~~-~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 329 (492)
- ..+ ..+++|+.|.+.+|.- + +...+......+++|++|++++|.......+.....+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~------------------l--t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSN------------------L--TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCc------------------c--chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 1 112 2256666666554431 0 1122233256778899999988853323345555556
Q ss_pred CCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCC---CCcccccCCCccCeEEEeccccCCCcccccCCC
Q 045751 330 LSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELME---DPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHG 406 (492)
Q Consensus 330 l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 406 (492)
+++|+.|.+. ....+ +.++.+.+.++.... ........+++++.+.+..+............+
T Consensus 320 c~~l~~l~~~-------------~~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~g 385 (482)
T KOG1947|consen 320 CPNLRELKLL-------------SLNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRG 385 (482)
T ss_pred Ccchhhhhhh-------------hcCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcC
Confidence 6766666554 22224 556666666554321 222244578888888888776333322223334
Q ss_pred CccccEEeecccCCcceEEEccCccccccEEEEeecCCcCcc-chhccC-CCCCcEEEecCCC
Q 045751 407 FPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRL-PKQLWS-VKRFKKLELWRPQ 467 (492)
Q Consensus 407 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~-l~~L~~L~l~~c~ 467 (492)
++.|. . .+.........++.|++..|...+.- -..... +.+++.+++.+|+
T Consensus 386 c~~l~-~---------~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 386 CPNLT-E---------SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred Ccccc-h---------HHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 44441 1 11111223333788888888765421 111111 6677778888876
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00013 Score=62.96 Aligned_cols=82 Identities=22% Similarity=0.174 Sum_probs=60.8
Q ss_pred CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH--Hhhcccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLNF 266 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L 266 (492)
.+...+||++|.+..++. +..++.|.+|.+++|+|+.+.+.+-..+++|..|.+.+|++.++.+ .+..+|+|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455677888887765543 5668888999999999998877773457789999999987766543 2667788888877
Q ss_pred ccccc
Q 045751 267 GLFTL 271 (492)
Q Consensus 267 ~~~~~ 271 (492)
-+|..
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 76654
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00048 Score=67.30 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=48.2
Q ss_pred hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccccc
Q 045751 301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE 380 (492)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~ 380 (492)
+..+.+++.|++++| ....+|. -..+|+.|.++ .|.+|+.+. +.+|++|++|++++|......|
T Consensus 48 ~~~~~~l~~L~Is~c---~L~sLP~---LP~sLtsL~Ls---nc~nLtsLP---~~LP~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC---DIESLPV---LPNELTEITIE---NCNNLTTLP---GSIPEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHhcCCCEEEeCCC---CCcccCC---CCCCCcEEEcc---CCCCcccCC---chhhhhhhheEccCcccccccc----
Confidence 556788999999988 4555551 22469999998 577776543 2355788888888884222232
Q ss_pred CCCccCeEEEecc
Q 045751 381 KLPLLQVLKLKKN 393 (492)
Q Consensus 381 ~l~~L~~L~l~~~ 393 (492)
++|+.|++.++
T Consensus 112 --~sLe~L~L~~n 122 (426)
T PRK15386 112 --ESVRSLEIKGS 122 (426)
T ss_pred --cccceEEeCCC
Confidence 24556666543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.00048 Score=59.60 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhc-cccccCEEEccCCCCccCch--hHHhcCC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIE-NLFFLRYLKLNIPSLKSLPS--SFLSSIS 236 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l~~~~i~~lp~--~~~~~l~ 236 (492)
..+...+++.+|.+. -...|..++.|.+|.+++|.|+.+.+.+. .+++|..|.+.+|.|.++.+ -+ ..++
T Consensus 41 ~d~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCP 113 (233)
T ss_pred ccccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCC
Confidence 567778888888764 34567788888888888888887766564 45578888888888774432 22 4788
Q ss_pred CccEEecCCCcccchHHH----hhcccccccccccc
Q 045751 237 NLYTLDMPFSYIHHTADV----FWEMNKLRHLNFGL 268 (492)
Q Consensus 237 ~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~L~~ 268 (492)
+|++|.+-+|.+..-... +..+++|+.||+..
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888888888866555432 56677777777654
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.81 E-value=0.00012 Score=75.32 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=21.0
Q ss_pred EEEEeecCCc-CccchhccCCCCCcEEEecCCCHHHHHH
Q 045751 436 CLIIDPCAYL-KRLPKQLWSVKRFKKLELWRPQPELRQK 473 (492)
Q Consensus 436 ~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~~~~~~ 473 (492)
.+.+.+|+.+ ..+........+++.|++..|.......
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 4555566655 3332223334448999999987444333
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00026 Score=64.18 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCch--hHHhcCCC
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPS--SFLSSISN 237 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~~l~~ 237 (492)
..+++.|.+.++.+. ......+|+.|++|.|+=|.|+.+.. +..|++|+.|.|+.|.|..+.+ .+ .++++
T Consensus 18 l~~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YL-knlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYL-KNLPS 89 (388)
T ss_pred HHHhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHH-hcCch
Confidence 445667777787775 23566789999999999998887654 6778899999999998886653 33 68888
Q ss_pred ccEEecCCC-c-ccchH----HHhhccccccccc
Q 045751 238 LYTLDMPFS-Y-IHHTA----DVFWEMNKLRHLN 265 (492)
Q Consensus 238 L~~L~L~~~-~-l~~lp----~~~~~l~~L~~L~ 265 (492)
|+.|.|..| . ...-+ .-+.-+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888887 2 22222 1256677777774
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.60 E-value=0.0011 Score=59.71 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=50.7
Q ss_pred ccCCcEEEEEecCCcCCCCchhhccccccCEEEccCC--CCc-cCchhHHhcCCCccEEecCCCcccchH--HHhhcccc
Q 045751 186 KMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIP--SLK-SLPSSFLSSISNLYTLDMPFSYIHHTA--DVFWEMNK 260 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~ 260 (492)
..+..|..|++.+..++.+- .+-.|++|++|.++.| ++. .++..+ .++++|++|++++|+++.+- ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcc
Confidence 34445555555555544221 1334677888888877 554 555555 66788888888888554321 12556667
Q ss_pred ccccccccccc
Q 045751 261 LRHLNFGLFTL 271 (492)
Q Consensus 261 L~~L~L~~~~~ 271 (492)
|..|++.+|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 77777777754
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.57 E-value=0.0026 Score=52.39 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=33.1
Q ss_pred HHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccc
Q 045751 183 KICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNK 260 (492)
Q Consensus 183 ~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~ 260 (492)
..|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +..++...|.++++|+.+.+.+ .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555555555553 233333 33455555666655543 5555555555555566666544 33333322 334555
Q ss_pred cccccc
Q 045751 261 LRHLNF 266 (492)
Q Consensus 261 L~~L~L 266 (492)
|+.+++
T Consensus 83 l~~i~~ 88 (129)
T PF13306_consen 83 LKNIDI 88 (129)
T ss_dssp ECEEEE
T ss_pred cccccc
Confidence 555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00052 Score=62.26 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH--Hhhccccccccc
Q 045751 188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLN 265 (492)
Q Consensus 188 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~ 265 (492)
+.+.+.|+.-||.++.+. -..+|+.|+.|.|+-|+|+.+.+- ..|++|+.|.|+.|.|..+.. .+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445666777777766442 234677888888888888877542 678888888888887766643 366777777777
Q ss_pred ccccccCCC
Q 045751 266 FGLFTLPAY 274 (492)
Q Consensus 266 L~~~~~~~~ 274 (492)
|..|...+.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 766654443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.48 E-value=0.0083 Score=49.32 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=34.7
Q ss_pred CeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCE
Q 045751 140 MIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRY 216 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~ 216 (492)
+++.+.+. +....+....+ +++|+.+.+..+.. .+....|.+++.++.+.+.+ .+..++ ..+..+++|+.
T Consensus 13 ~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~~~-----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFP-NTIKKIGENAFSNCTSLKSINFPNNLT-----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEET-ST--EE-TTTTTT-TT-SEEEESSTTS-----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCEEEEC-CCeeEeChhhccccccccccccccccc-----ccceeeeecccccccccccc-cccccccccccccccccc
Confidence 34444444 33444443444 44555555544311 13334455554555555543 222222 23344555555
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCC
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPF 245 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~ 245 (492)
+.+..+ +..++...|.++ +|+.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555432 444444444444 555554443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0026 Score=57.48 Aligned_cols=105 Identities=25% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCceEEEEecccCCCCCcccccCCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcceEE--EccCccccc
Q 045751 359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT--MGTGAMPKL 434 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L 434 (492)
..|+.|++.++.++ ....+..+|+|+.|.++.|. ..+ .+......+|+|++|.+++| .++.+. ..+..+++|
T Consensus 43 ~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 45566666665542 23355678899999999883 333 23444556699999999998 444321 135677788
Q ss_pred cEEEEeecCCcCcc---chhccCCCCCcEEEecCCC
Q 045751 435 ECLIIDPCAYLKRL---PKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 435 ~~L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~c~ 467 (492)
..|++.+|..+.-- -..+.-+++|+.|+-..+.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 88899888765410 1134567888888766543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0053 Score=33.05 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=9.2
Q ss_pred EEEEEecCCcCCCCchhhc
Q 045751 191 LRVLDLGSLVLSQLPSGIE 209 (492)
Q Consensus 191 L~~L~L~~~~l~~l~~~~~ 209 (492)
|++||+++|.++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555544444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0049 Score=33.21 Aligned_cols=17 Identities=53% Similarity=0.749 Sum_probs=7.4
Q ss_pred cCEEEccCCCCccCchh
Q 045751 214 LRYLKLNIPSLKSLPSS 230 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~ 230 (492)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0014 Score=56.85 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=49.5
Q ss_pred CceEEEEecccCCCCCcccccCCCccCeEEEeccccCC-CcccccCCCCccccEEeecccCCcceEE-EccCccccccEE
Q 045751 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG-RKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMPKLECL 437 (492)
Q Consensus 360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L 437 (492)
.++.++-+++.+......-+.+++.++.|.+.+|...+ ..+....+..++|+.|+|++|+.+++-- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666666666655666666677777777776654332 2233333456677777777776666321 234566666666
Q ss_pred EEeecCC
Q 045751 438 IIDPCAY 444 (492)
Q Consensus 438 ~l~~c~~ 444 (492)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 6665443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.89 E-value=0.001 Score=58.85 Aligned_cols=91 Identities=18% Similarity=0.031 Sum_probs=65.0
Q ss_pred hHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccc
Q 045751 180 DCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMN 259 (492)
Q Consensus 180 ~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~ 259 (492)
++...+..++...+||++.|.+..+...++.++.|..|+++.+.+..+|.+. +....+.++++..|+....|.+++..+
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccC
Confidence 3345556677777777777776666666666777777777777777777776 777777777777777777777777777
Q ss_pred cccccccccccc
Q 045751 260 KLRHLNFGLFTL 271 (492)
Q Consensus 260 ~L~~L~L~~~~~ 271 (492)
.++++++..+.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 777777766653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.07 E-value=0.03 Score=27.94 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=4.3
Q ss_pred cCEEEccCCCCcc
Q 045751 214 LRYLKLNIPSLKS 226 (492)
Q Consensus 214 L~~L~l~~~~i~~ 226 (492)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.68 E-value=0.042 Score=27.39 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=5.8
Q ss_pred CccEEecCCCcccch
Q 045751 237 NLYTLDMPFSYIHHT 251 (492)
Q Consensus 237 ~L~~L~L~~~~l~~l 251 (492)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555544444
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.006 Score=53.00 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=61.0
Q ss_pred cCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE--ccCccccccEEEEeecCCcCcc-chhccCCCCCcEE
Q 045751 385 LQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM--GTGAMPKLECLIIDPCAYLKRL-PKQLWSVKRFKKL 461 (492)
Q Consensus 385 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 461 (492)
++.++-+++.+..+.+ .-+..+++++.|.+.+|..+..+.- --+-.|+|+.|+|++|+.+++- -.++..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4556666555554442 2256788999999999988886532 2346799999999999988743 3577889999999
Q ss_pred EecCCC
Q 045751 462 ELWRPQ 467 (492)
Q Consensus 462 ~l~~c~ 467 (492)
.+.+.+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 999876
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.53 E-value=0.067 Score=30.00 Aligned_cols=20 Identities=40% Similarity=0.358 Sum_probs=12.4
Q ss_pred cccCEEEccCCCCccCchhH
Q 045751 212 FFLRYLKLNIPSLKSLPSSF 231 (492)
Q Consensus 212 ~~L~~L~l~~~~i~~lp~~~ 231 (492)
++|++|++++|.|+.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666555
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.53 E-value=0.067 Score=30.00 Aligned_cols=20 Identities=40% Similarity=0.358 Sum_probs=12.4
Q ss_pred cccCEEEccCCCCccCchhH
Q 045751 212 FFLRYLKLNIPSLKSLPSSF 231 (492)
Q Consensus 212 ~~L~~L~l~~~~i~~lp~~~ 231 (492)
++|++|++++|.|+.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666555
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.95 E-value=0.0043 Score=62.89 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=58.0
Q ss_pred eeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhccc-cccCEEEccCCCCc-----cCchhH
Q 045751 163 LHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIENL-FFLRYLKLNIPSLK-----SLPSSF 231 (492)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~l-~~L~~L~l~~~~i~-----~lp~~~ 231 (492)
+..+.+.+|.............+.....|..|++++|.+.. +-..+... ..|++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 44444445544432334556666677777777777776651 11222222 34566666666555 233444
Q ss_pred HhcCCCccEEecCCCccc-----chHHHhh----cccccccccccccccC
Q 045751 232 LSSISNLYTLDMPFSYIH-----HTADVFW----EMNKLRHLNFGLFTLP 272 (492)
Q Consensus 232 ~~~l~~L~~L~L~~~~l~-----~lp~~~~----~l~~L~~L~L~~~~~~ 272 (492)
.....++.+|++.|.+. .++..+. ...++++|++++|.++
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 44666777777777331 1222233 3556777777776653
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.01 E-value=0.02 Score=50.91 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=71.0
Q ss_pred CCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccC
Q 045751 203 QLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS 281 (492)
Q Consensus 203 ~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~ 281 (492)
.+| ..+.....-+.||++.+++..+-..+ +.++.|+.||++.+.+..+|..+++...++++++..|.. ...|.+.+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH-SQQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch-hhCCccccc
Confidence 444 44666778889999999988888777 889999999999999999999999999999999887765 577777777
Q ss_pred CcccceeecC
Q 045751 282 LENLNFISAL 291 (492)
Q Consensus 282 l~~L~~l~~~ 291 (492)
++.++.++..
T Consensus 110 ~~~~k~~e~k 119 (326)
T KOG0473|consen 110 EPHPKKNEQK 119 (326)
T ss_pred cCCcchhhhc
Confidence 7766666554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.05 E-value=0.32 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=16.7
Q ss_pred CCCccEEecCCCcccchHHHh
Q 045751 235 ISNLYTLDMPFSYIHHTADVF 255 (492)
Q Consensus 235 l~~L~~L~L~~~~l~~lp~~~ 255 (492)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888899888888888654
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.05 E-value=0.32 Score=27.17 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=16.7
Q ss_pred CCCccEEecCCCcccchHHHh
Q 045751 235 ISNLYTLDMPFSYIHHTADVF 255 (492)
Q Consensus 235 l~~L~~L~L~~~~l~~lp~~~ 255 (492)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888899888888888654
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.99 E-value=0.038 Score=56.14 Aligned_cols=132 Identities=20% Similarity=0.130 Sum_probs=83.8
Q ss_pred eeEEEEecCCCCcccccc----c--CCCeeEEEeecCCCCCCCchhHHHHhccC-CcEEEEEecCCcCC-----CCchhh
Q 045751 141 IKRLTANVNLSELDSLED----F--NLYLHSLLCLSSESHHLDPLDCEKICKMF-KFLRVLDLGSLVLS-----QLPSGI 208 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~----~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~-----~l~~~~ 208 (492)
..++++.++.+....... + .+.|..|++.+|.+.+.........+... ..+++|++..|.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 455555544444433222 2 77888888888887743344555555554 66788888888765 345666
Q ss_pred ccccccCEEEccCCCCc-----cCchhH---HhcCCCccEEecCCCcccc-----hHHHhhcccc-cccccccccccC
Q 045751 209 ENLFFLRYLKLNIPSLK-----SLPSSF---LSSISNLYTLDMPFSYIHH-----TADVFWEMNK-LRHLNFGLFTLP 272 (492)
Q Consensus 209 ~~l~~L~~L~l~~~~i~-----~lp~~~---~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~-L~~L~L~~~~~~ 272 (492)
....+++.++++.|.+. .++..+ |....++++|.+++|.++. +...+...+. +..|++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 67778888888888764 222333 1247788999999886542 2233555555 677888877764
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.34 E-value=2.3 Score=23.04 Aligned_cols=15 Identities=40% Similarity=0.377 Sum_probs=8.2
Q ss_pred CCCccEEecCCCccc
Q 045751 235 ISNLYTLDMPFSYIH 249 (492)
Q Consensus 235 l~~L~~L~L~~~~l~ 249 (492)
+++|++|++++|.++
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 356777777777654
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.20 E-value=2.3 Score=23.66 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=7.6
Q ss_pred ccccEEEEeecCCcC
Q 045751 432 PKLECLIIDPCAYLK 446 (492)
Q Consensus 432 ~~L~~L~l~~c~~l~ 446 (492)
++|+.|++++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.37 E-value=2.9 Score=23.38 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=8.5
Q ss_pred ccCEEEccCCCCccCch
Q 045751 213 FLRYLKLNIPSLKSLPS 229 (492)
Q Consensus 213 ~L~~L~l~~~~i~~lp~ 229 (492)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.36 E-value=4.2 Score=22.81 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=6.3
Q ss_pred ccCEEEccCCCCc
Q 045751 213 FLRYLKLNIPSLK 225 (492)
Q Consensus 213 ~L~~L~l~~~~i~ 225 (492)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555554444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.02 E-value=2.2 Score=43.27 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=8.1
Q ss_pred ccccEEEEeecCCcC
Q 045751 432 PKLECLIIDPCAYLK 446 (492)
Q Consensus 432 ~~L~~L~l~~c~~l~ 446 (492)
..|++|.+.+||..+
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 345555555555544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.28 E-value=15 Score=20.83 Aligned_cols=12 Identities=42% Similarity=0.362 Sum_probs=5.4
Q ss_pred ccCEEEccCCCC
Q 045751 213 FLRYLKLNIPSL 224 (492)
Q Consensus 213 ~L~~L~l~~~~i 224 (492)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 92
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=47.57 E-value=10 Score=19.68 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=10.4
Q ss_pred HHHHHhhcccCCh
Q 045751 5 RLRRLLSGEEVTL 17 (492)
Q Consensus 5 ~~~~~i~~~~~Gl 17 (492)
.||.|+|.+|...
T Consensus 2 ~IG~kla~MCDdF 14 (21)
T PF11430_consen 2 EIGTKLAAMCDDF 14 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6899999998653
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.44 E-value=26 Score=35.86 Aligned_cols=61 Identities=20% Similarity=-0.017 Sum_probs=26.9
Q ss_pred ccCCcEEEEEecCCcCCCC---chhhccccccCEEEccCC--CCccCchhHHhcCCCccEEecCCC
Q 045751 186 KMFKFLRVLDLGSLVLSQL---PSGIENLFFLRYLKLNIP--SLKSLPSSFLSSISNLYTLDMPFS 246 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~l~~~--~i~~lp~~~~~~l~~L~~L~L~~~ 246 (492)
.+.+.+..+.|++|.+..+ ..--..-++|..|+|++| .+...++.---+...|++|-+.+|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGN 280 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCC
Confidence 3455555555555554322 121233455666666665 332211110012334555666665
No 94
>PF14162 YozD: YozD-like protein
Probab=30.47 E-value=80 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHhCCCC-CC-hHHHHHHHHHHHHHhcceee
Q 045751 65 WIAEGFIP-DN-NEGTAEKYLEHLINRGFVEA 94 (492)
Q Consensus 65 wia~gf~~-~~-~~~~~~~~~~~L~~~~li~~ 94 (492)
.+.-||++ .. .+++|.-.|+-|+.+|++..
T Consensus 21 L~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 21 LVKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34557776 33 77777777888888887753
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.49 E-value=2.2e+02 Score=31.89 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred hHHHHHHhhcccCChhhHHHHHhhhcccchH----------------HHHHHHHh-hhcccccccccce-------eecH
Q 045751 3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEIE----------------IVTSLLRD-YECEIAGHLVNII-------VEEE 58 (492)
Q Consensus 3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~~----------------i~~~l~~s-y~~~l~~~~k~~~-------~~~~ 58 (492)
++.-..+|.+.+.|.|+++..++..++.... +..-+... ++ .+|+..++.+ .|+
T Consensus 204 ~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~-~l~~~~~~~l~~~a~~~~~~- 281 (903)
T PRK04841 204 EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLD-NVDLETRHFLLRCSVLRSMN- 281 (903)
T ss_pred CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhcccccCC-
Confidence 3455678999999999999999877654321 11111111 22 1233322211 111
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHh
Q 045751 59 EMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVA 120 (492)
Q Consensus 59 ~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~ 120 (492)
.++ +.... ..+.+...+++|...+++...... .+ ..|+.|+++++...+..
T Consensus 282 ~~l-----~~~l~---~~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 DAL-----IVRVT---GEENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHH-----HHHHc---CCCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 011 11010 112246789999999987543211 22 35888999999988764
No 96
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.50 E-value=1.5e+02 Score=18.71 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=6.3
Q ss_pred CCCCceEEEE
Q 045751 357 FPPSLTHLSF 366 (492)
Q Consensus 357 lp~~L~~L~L 366 (492)
+|+++++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 4566666666
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.37 E-value=61 Score=40.17 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=17.3
Q ss_pred EecCCcCCCCc-hhhccccccCEEEccCCCCc
Q 045751 195 DLGSLVLSQLP-SGIENLFFLRYLKLNIPSLK 225 (492)
Q Consensus 195 ~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~ 225 (492)
||++|.|+.+| ..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35566666555 34455666666666665443
Done!