Query 045751
Match_columns 492
No_of_seqs 370 out of 4241
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.8E-32 2.3E-36 291.2 13.6 322 160-491 317-765 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-30 1.7E-34 270.1 18.3 325 137-467 30-532 (606)
3 3v47_A TOLL-like receptor 5B a 100.0 1.1E-29 3.6E-34 258.0 18.6 323 137-467 28-406 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 4.3E-29 1.5E-33 255.1 19.5 312 143-467 15-331 (477)
5 2z63_A TOLL-like receptor 4, v 100.0 3.9E-29 1.3E-33 261.2 18.0 323 138-467 27-529 (570)
6 3rgz_A Protein brassinosteroid 100.0 2.4E-29 8.2E-34 271.4 16.1 318 138-467 199-549 (768)
7 4eco_A Uncharacterized protein 100.0 2.4E-29 8.3E-34 265.4 14.9 316 139-464 81-544 (636)
8 4ecn_A Leucine-rich repeat pro 100.0 9E-29 3.1E-33 266.1 18.7 155 181-341 440-629 (876)
9 4eco_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 260.1 17.2 315 137-467 204-598 (636)
10 3o6n_A APL1; leucine-rich repe 100.0 1.6E-28 5.5E-33 244.2 17.1 302 139-467 45-350 (390)
11 3t6q_A CD180 antigen; protein- 100.0 2.7E-28 9.2E-33 256.8 19.4 247 214-465 256-532 (606)
12 3t6q_A CD180 antigen; protein- 100.0 6.3E-28 2.2E-32 254.0 20.1 108 359-467 400-511 (606)
13 3oja_B Anopheles plasmodium-re 100.0 4.1E-28 1.4E-32 254.5 16.7 289 160-467 50-356 (597)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-28 2.9E-32 250.0 18.6 321 138-467 25-508 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-27 1.2E-31 243.7 21.3 310 138-467 20-479 (520)
16 4fmz_A Internalin; leucine ric 100.0 3.3E-27 1.1E-31 230.9 19.9 299 138-467 43-344 (347)
17 4ecn_A Leucine-rich repeat pro 100.0 2E-27 7E-32 255.6 19.9 311 137-467 489-838 (876)
18 1o6v_A Internalin A; bacterial 99.9 1.4E-26 4.9E-31 235.6 23.0 302 139-467 46-386 (466)
19 3v47_A TOLL-like receptor 5B a 99.9 5.1E-27 1.7E-31 238.3 19.1 312 144-467 15-382 (455)
20 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-27 8.3E-32 244.8 17.0 312 142-467 3-455 (520)
21 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-27 7.5E-32 249.8 16.5 317 137-467 54-556 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-27 1.1E-31 246.1 17.4 312 137-467 50-508 (562)
23 4fmz_A Internalin; leucine ric 99.9 6.6E-27 2.3E-31 228.8 18.5 279 160-467 43-322 (347)
24 1o6v_A Internalin A; bacterial 99.9 1.2E-26 4.2E-31 236.1 19.4 282 160-467 45-364 (466)
25 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-26 8E-31 250.5 22.5 317 137-467 22-437 (844)
26 1ziw_A TOLL-like receptor 3; i 99.9 8.8E-27 3E-31 248.6 18.6 321 138-466 24-440 (680)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-26 5.5E-31 246.5 18.8 316 144-467 9-364 (680)
28 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-26 8.1E-31 239.0 17.8 308 149-467 15-421 (549)
29 2z63_A TOLL-like receptor 4, v 99.9 1.3E-26 4.6E-31 242.0 16.0 137 151-292 19-158 (570)
30 2id5_A Lingo-1, leucine rich r 99.9 6.8E-27 2.3E-31 238.8 13.2 297 137-446 30-334 (477)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-26 7.8E-31 239.7 16.5 315 141-467 33-484 (562)
32 3o6n_A APL1; leucine-rich repe 99.9 8.6E-26 2.9E-30 224.5 18.4 284 160-467 44-329 (390)
33 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.6E-31 223.3 13.3 233 187-466 79-311 (328)
34 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-25 3.6E-30 238.0 18.6 323 137-467 50-578 (635)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-25 5.2E-30 244.1 19.3 188 144-340 9-213 (844)
36 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-25 1.4E-29 223.4 18.9 293 138-467 41-350 (457)
37 3oja_B Anopheles plasmodium-re 99.9 3.5E-25 1.2E-29 232.2 18.2 271 187-467 49-335 (597)
38 1ogq_A PGIP-2, polygalacturona 99.9 5.2E-26 1.8E-30 218.9 8.7 248 161-467 50-302 (313)
39 1xku_A Decorin; proteoglycan, 99.9 4.7E-25 1.6E-29 214.0 13.3 284 140-466 32-329 (330)
40 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-25 1.2E-29 215.1 10.6 265 160-467 53-331 (332)
41 1xku_A Decorin; proteoglycan, 99.9 3.1E-24 1.1E-28 208.2 17.2 264 191-468 33-305 (330)
42 3bz5_A Internalin-J, INLJ; leu 99.9 3.6E-24 1.2E-28 216.6 17.9 270 160-467 41-329 (457)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-25 5.5E-30 215.5 7.1 139 139-282 50-197 (313)
44 2ft3_A Biglycan; proteoglycan, 99.9 4.3E-24 1.5E-28 207.5 14.4 262 191-467 35-305 (332)
45 1jl5_A Outer protein YOPM; leu 99.9 2E-23 6.9E-28 210.9 17.9 288 138-467 90-407 (454)
46 4fcg_A Uncharacterized protein 99.9 2.3E-24 7.9E-29 208.7 10.2 222 160-442 80-311 (328)
47 4g8a_A TOLL-like receptor 4; l 99.9 6.4E-23 2.2E-27 216.7 17.7 302 136-446 73-581 (635)
48 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-25 8E-30 226.4 -1.3 326 139-467 3-409 (461)
49 2z80_A TOLL-like receptor 2, v 99.9 8.9E-23 3E-27 199.9 14.3 253 159-446 50-315 (353)
50 2z80_A TOLL-like receptor 2, v 99.9 3.9E-23 1.3E-27 202.5 11.0 270 160-467 30-312 (353)
51 2z66_A Variable lymphocyte rec 99.9 9.7E-23 3.3E-27 195.5 12.0 226 189-444 28-260 (306)
52 3ogk_B Coronatine-insensitive 99.9 6.1E-23 2.1E-27 215.3 10.8 322 139-467 112-524 (592)
53 3zyi_A Leucine-rich repeat-con 99.9 3.2E-22 1.1E-26 202.6 15.1 223 190-467 76-301 (452)
54 1z7x_W Ribonuclease inhibitor; 99.9 6.8E-24 2.3E-28 215.6 2.6 301 160-467 2-381 (461)
55 2z66_A Variable lymphocyte rec 99.9 7.1E-23 2.4E-27 196.4 8.8 241 143-419 11-259 (306)
56 1jl5_A Outer protein YOPM; leu 99.9 6.9E-22 2.3E-26 199.6 16.0 288 138-467 110-427 (454)
57 3zyj_A Leucine-rich repeat-con 99.9 6.6E-22 2.3E-26 199.6 15.6 222 190-467 65-290 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-22 4.5E-27 192.5 9.3 247 189-466 32-284 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-23 8E-28 200.8 3.2 244 179-465 24-271 (317)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-21 4.3E-26 198.3 14.3 242 141-395 56-302 (452)
61 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-21 1.9E-25 199.1 17.9 261 140-450 41-302 (622)
62 3zyj_A Leucine-rich repeat-con 99.9 2.9E-21 9.7E-26 194.9 14.5 242 141-395 45-291 (440)
63 1wwl_A Monocyte differentiatio 99.8 8.8E-23 3E-27 196.3 0.2 222 191-467 65-307 (312)
64 3ogk_B Coronatine-insensitive 99.8 1.6E-21 5.5E-26 204.5 8.3 304 160-466 163-548 (592)
65 3o53_A Protein LRIM1, AGAP0063 99.8 5.7E-21 1.9E-25 184.1 11.3 237 189-467 10-248 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.8 8.7E-21 3E-25 197.6 13.5 256 160-467 39-295 (622)
67 2p1m_B Transport inhibitor res 99.8 6.7E-21 2.3E-25 199.8 11.4 322 139-468 105-518 (594)
68 3oja_A Leucine-rich immune mol 99.8 7.7E-21 2.6E-25 193.8 10.5 235 187-464 32-270 (487)
69 1wwl_A Monocyte differentiatio 99.8 1.2E-21 4E-26 188.4 3.9 227 162-445 64-309 (312)
70 3oja_A Leucine-rich immune mol 99.8 2.8E-21 9.6E-26 197.1 6.6 236 160-440 33-270 (487)
71 1ozn_A Reticulon 4 receptor; N 99.8 4.9E-20 1.7E-24 174.8 13.3 220 192-467 14-236 (285)
72 2z62_A TOLL-like receptor 4, v 99.8 1.6E-19 5.5E-24 170.3 11.3 84 359-445 149-237 (276)
73 1p9a_G Platelet glycoprotein I 99.8 2.9E-19 1E-23 169.6 11.6 90 185-278 6-95 (290)
74 2ast_B S-phase kinase-associat 99.8 5.9E-20 2E-24 178.4 6.8 255 162-454 48-315 (336)
75 1h6u_A Internalin H; cell adhe 99.8 9.6E-19 3.3E-23 167.6 14.1 188 188-418 40-227 (308)
76 3rfs_A Internalin B, repeat mo 99.8 2.6E-19 8.9E-24 168.5 9.6 91 359-457 157-247 (272)
77 2z62_A TOLL-like receptor 4, v 99.8 9.7E-19 3.3E-23 164.9 12.3 205 160-396 27-237 (276)
78 2p1m_B Transport inhibitor res 99.8 3E-20 1E-24 194.8 1.0 110 354-466 428-541 (594)
79 2o6q_A Variable lymphocyte rec 99.8 2E-18 7E-23 162.2 13.4 79 191-271 18-97 (270)
80 3rfs_A Internalin B, repeat mo 99.8 4.1E-19 1.4E-23 167.1 7.4 149 160-315 40-191 (272)
81 2o6q_A Variable lymphocyte rec 99.8 2E-18 6.9E-23 162.2 11.8 105 162-273 17-123 (270)
82 2ca6_A RAN GTPase-activating p 99.8 4.3E-20 1.5E-24 183.0 -0.0 110 354-465 212-339 (386)
83 2xwt_C Thyrotropin receptor; s 99.8 1.7E-18 5.9E-23 159.6 10.6 208 201-467 23-237 (239)
84 2ca6_A RAN GTPase-activating p 99.8 1.5E-19 5.1E-24 179.1 3.2 228 160-418 31-313 (386)
85 1h6u_A Internalin H; cell adhe 99.8 5.4E-18 1.8E-22 162.4 13.5 206 196-446 26-231 (308)
86 4ay9_X Follicle-stimulating ho 99.8 2.6E-18 9E-23 167.8 11.4 53 194-248 14-66 (350)
87 1p9a_G Platelet glycoprotein I 99.7 4.2E-18 1.4E-22 161.6 12.0 199 208-467 6-206 (290)
88 2ast_B S-phase kinase-associat 99.7 7E-19 2.4E-23 170.8 6.3 246 140-422 48-306 (336)
89 2xwt_C Thyrotropin receptor; s 99.7 1.4E-18 4.7E-23 160.3 7.7 82 190-271 32-117 (239)
90 3goz_A Leucine-rich repeat-con 99.7 1.9E-18 6.6E-23 169.5 7.4 92 181-272 14-122 (362)
91 3goz_A Leucine-rich repeat-con 99.7 4.7E-19 1.6E-23 173.9 2.9 248 193-444 2-296 (362)
92 4glp_A Monocyte differentiatio 99.7 4.2E-18 1.4E-22 163.4 9.0 228 160-445 63-307 (310)
93 4glp_A Monocyte differentiatio 99.7 8.1E-17 2.8E-21 154.4 11.9 224 139-418 64-304 (310)
94 4ay9_X Follicle-stimulating ho 99.7 2.8E-17 9.5E-22 160.4 6.8 217 189-441 30-255 (350)
95 3m19_A Variable lymphocyte rec 99.7 2.7E-16 9.1E-21 146.0 11.5 81 190-272 15-96 (251)
96 1h6t_A Internalin B; cell adhe 99.6 9.7E-16 3.3E-20 145.4 13.1 167 187-418 44-210 (291)
97 3m19_A Variable lymphocyte rec 99.6 6.3E-16 2.2E-20 143.4 11.4 170 141-315 16-189 (251)
98 1h6t_A Internalin B; cell adhe 99.6 5.6E-16 1.9E-20 147.0 10.4 122 160-315 45-166 (291)
99 3cvr_A Invasion plasmid antige 99.6 3.7E-16 1.3E-20 160.8 7.1 187 190-455 60-253 (571)
100 1m9s_A Internalin B; cell inva 99.6 1.7E-15 5.8E-20 157.6 11.6 60 353-418 148-207 (605)
101 1m9s_A Internalin B; cell inva 99.6 1E-15 3.5E-20 159.2 9.8 171 160-374 42-212 (605)
102 4ezg_A Putative uncharacterize 99.6 2.4E-15 8.2E-20 134.0 9.9 153 209-395 41-193 (197)
103 2o6s_A Variable lymphocyte rec 99.6 7.7E-16 2.6E-20 138.5 6.0 176 143-330 11-188 (208)
104 2o6s_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 136.8 7.6 160 189-383 28-189 (208)
105 3cvr_A Invasion plasmid antige 99.6 7.7E-15 2.6E-19 151.0 10.4 175 213-467 60-241 (571)
106 1xeu_A Internalin C; cellular 99.6 3.1E-15 1.1E-19 139.6 6.7 78 190-271 20-97 (263)
107 1dce_A Protein (RAB geranylger 99.5 9.5E-17 3.3E-21 165.9 -4.6 206 233-463 346-567 (567)
108 4ezg_A Putative uncharacterize 99.5 2.2E-14 7.4E-19 127.8 11.3 127 185-315 62-191 (197)
109 3e6j_A Variable lymphocyte rec 99.5 2E-14 6.9E-19 131.2 10.0 126 143-273 23-149 (229)
110 4b8c_D Glucose-repressible alc 99.5 3.4E-15 1.2E-19 159.1 5.3 152 138-291 172-324 (727)
111 2v9t_B SLIT homolog 2 protein 99.5 2.1E-14 7.1E-19 130.2 8.6 151 192-396 14-165 (220)
112 2v9t_B SLIT homolog 2 protein 99.5 2.7E-14 9.4E-19 129.5 9.4 140 144-288 16-157 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 3.4E-14 1.2E-18 128.8 9.0 134 143-280 15-150 (220)
114 1dce_A Protein (RAB geranylger 99.5 3E-16 1E-20 162.2 -6.2 203 209-439 346-567 (567)
115 3e6j_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 127.9 9.9 78 193-272 23-101 (229)
116 2xot_A Amphoterin-induced prot 99.5 1.5E-14 5.2E-19 141.6 5.5 175 193-396 22-202 (361)
117 3sb4_A Hypothetical leucine ri 99.5 1.5E-13 5.1E-18 132.8 12.4 280 160-463 24-328 (329)
118 2a5y_B CED-4; apoptosis; HET: 99.5 4.8E-15 1.6E-19 153.1 0.8 113 3-124 315-472 (549)
119 2v70_A SLIT-2, SLIT homolog 2 99.5 7.8E-14 2.7E-18 126.5 8.4 101 190-290 33-136 (220)
120 1xeu_A Internalin C; cellular 99.5 1.2E-13 4.1E-18 128.8 9.1 82 185-271 37-118 (263)
121 2je0_A Acidic leucine-rich nuc 99.4 7.8E-14 2.7E-18 118.2 5.7 108 160-272 16-126 (149)
122 2je0_A Acidic leucine-rich nuc 99.4 1.4E-13 4.7E-18 116.6 6.8 129 186-339 14-148 (149)
123 2xot_A Amphoterin-induced prot 99.4 1.9E-13 6.4E-18 133.8 8.6 169 142-316 21-200 (361)
124 2ell_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 115.2 8.8 126 138-271 23-159 (168)
125 2ell_A Acidic leucine-rich nuc 99.4 6.2E-13 2.1E-17 115.0 7.9 82 188-271 23-107 (168)
126 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.5E-18 118.2 5.3 131 160-315 18-150 (176)
127 4b8c_D Glucose-repressible alc 99.4 2.9E-14 9.8E-19 152.0 -1.5 159 160-328 172-337 (727)
128 1ds9_A Outer arm dynein; leuci 99.3 1.2E-13 4.2E-18 123.0 0.4 130 182-337 41-180 (198)
129 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.5E-17 112.9 7.3 127 137-271 17-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.3 6.5E-12 2.2E-16 111.2 9.7 84 189-272 31-115 (193)
131 1w8a_A SLIT protein; signaling 99.3 3.6E-12 1.2E-16 112.8 8.0 122 192-315 11-136 (192)
132 2wfh_A SLIT homolog 2 protein 99.3 3.2E-12 1.1E-16 113.2 7.5 107 160-271 30-138 (193)
133 1w8a_A SLIT protein; signaling 99.3 2.1E-12 7.1E-17 114.4 5.7 125 143-272 12-139 (192)
134 2o6r_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 111.1 7.1 127 143-274 11-139 (177)
135 4fdw_A Leucine rich hypothetic 99.3 6.4E-11 2.2E-15 117.0 14.7 261 160-467 112-381 (401)
136 4fdw_A Leucine rich hypothetic 99.2 6.5E-11 2.2E-15 116.9 14.0 259 138-441 112-379 (401)
137 1ds9_A Outer arm dynein; leuci 99.2 1.7E-13 5.9E-18 122.0 -4.4 105 185-315 14-125 (198)
138 2o6r_A Variable lymphocyte rec 99.2 2.8E-11 9.5E-16 105.5 9.4 84 189-272 28-113 (177)
139 3sb4_A Hypothetical leucine ri 99.2 5.4E-12 1.8E-16 121.8 3.2 280 140-439 26-328 (329)
140 2r9u_A Variable lymphocyte rec 99.1 3.2E-11 1.1E-15 104.8 5.3 83 189-271 33-117 (174)
141 3g39_A Variable lymphocyte rec 99.1 4.4E-11 1.5E-15 103.5 5.3 83 189-271 30-114 (170)
142 4fs7_A Uncharacterized protein 99.1 9.4E-10 3.2E-14 108.8 15.0 283 157-465 65-375 (394)
143 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 99.5 7.3 97 191-289 11-108 (170)
144 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 99.6 7.4 97 192-290 15-112 (174)
145 3sfz_A APAF-1, apoptotic pepti 99.0 4E-10 1.4E-14 128.0 7.9 109 4-123 307-452 (1249)
146 3un9_A NLR family member X1; l 99.0 2.5E-10 8.5E-15 111.7 4.6 138 160-315 71-221 (372)
147 4fs7_A Uncharacterized protein 98.8 2.5E-08 8.7E-13 98.4 13.6 268 180-465 62-352 (394)
148 2ifg_A High affinity nerve gro 98.8 2.5E-09 8.4E-14 103.8 5.2 87 185-271 27-115 (347)
149 3un9_A NLR family member X1; l 98.8 1.6E-09 5.5E-14 105.9 3.5 167 139-329 72-261 (372)
150 2ifg_A High affinity nerve gro 98.7 1.2E-08 4.2E-13 98.8 7.6 98 193-292 12-112 (347)
151 1vt4_I APAF-1 related killer D 98.7 9.3E-09 3.2E-13 109.6 6.2 97 5-116 317-436 (1221)
152 4gt6_A Cell surface protein; l 98.6 5.4E-07 1.9E-11 88.8 16.2 291 156-468 56-369 (394)
153 1z6t_A APAF-1, apoptotic prote 98.5 1E-07 3.6E-12 99.3 7.5 105 4-119 307-448 (591)
154 4gt6_A Cell surface protein; l 98.5 6.4E-07 2.2E-11 88.3 12.7 305 139-466 64-388 (394)
155 1io0_A Tropomodulin; LRR prote 98.5 7.7E-08 2.6E-12 84.1 4.9 111 160-271 35-163 (185)
156 2ra8_A Uncharacterized protein 98.5 3.6E-08 1.2E-12 95.6 2.2 138 323-467 164-318 (362)
157 2ra8_A Uncharacterized protein 98.4 2.1E-07 7.3E-12 90.1 6.7 79 186-267 136-227 (362)
158 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.9E-12 81.2 2.9 86 360-446 62-153 (176)
159 1io0_A Tropomodulin; LRR prote 98.4 2.2E-07 7.6E-12 81.2 4.5 118 180-316 27-162 (185)
160 4h09_A Hypothetical leucine ri 98.3 7.2E-06 2.5E-10 80.2 13.6 95 139-244 46-143 (379)
161 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.2E-11 74.8 4.8 84 383-467 61-150 (176)
162 4h09_A Hypothetical leucine ri 98.1 3.1E-05 1.1E-09 75.7 12.6 277 160-463 45-340 (379)
163 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.8E-10 73.4 6.7 78 186-265 167-257 (267)
164 3rw6_A Nuclear RNA export fact 97.9 1.7E-06 5.8E-11 79.6 0.1 66 209-276 167-237 (267)
165 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00049 1.7E-08 59.7 4.8 109 160-269 40-167 (197)
166 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.7E-08 51.2 5.7 54 193-248 12-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0059 2E-07 52.9 6.1 89 180-269 32-136 (197)
168 3rfe_A Platelet glycoprotein I 95.4 0.0093 3.2E-07 48.1 3.2 55 215-272 11-68 (130)
169 2qen_A Walker-type ATPase; unk 38.4 45 0.0015 30.7 5.9 26 3-28 224-249 (350)
170 2lz0_A Uncharacterized protein 31.2 42 0.0014 24.8 3.5 36 208-244 16-51 (100)
171 2vda_B Maltoporin; sugar trans 30.4 30 0.001 18.1 1.7 19 12-30 6-24 (28)
172 1hqc_A RUVB; extended AAA-ATPa 27.3 14 0.00047 34.0 0.2 30 65-94 289-324 (324)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.8e-32 Score=291.25 Aligned_cols=322 Identities=16% Similarity=0.121 Sum_probs=187.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccc-ccCEEEccCCCCc-cCchhHHhc--
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLF-FLRYLKLNIPSLK-SLPSSFLSS-- 234 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~-~L~~L~l~~~~i~-~lp~~~~~~-- 234 (492)
+++|++|++++|... ...+...+.++++|++|++++|.++ .+|..+..++ +|++|++++|.+. .+|..+ ..
T Consensus 317 l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~ 392 (768)
T 3rgz_A 317 CSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNP 392 (768)
T ss_dssp CTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCST
T ss_pred CCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhcc
Confidence 445555555544432 1123334555556666666655554 5555554444 4555555544444 333333 22
Q ss_pred CCCccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCcccceE
Q 045751 235 ISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLPNLRKL 310 (492)
Q Consensus 235 l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~~L~~L 310 (492)
+++|++|++++|.+. .+|..++++++|+.|++++|.+.+.+|..++.+++|+.+++++ ....+.. +..+++|+.|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEE
Confidence 445555555555443 4555666677777777777766666666666666777766653 2223333 6666666667
Q ss_pred EeeeccCcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecc
Q 045751 311 RIHGDLSNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNT 369 (492)
Q Consensus 311 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~ 369 (492)
++++| ...+.+|..+..+++|+.|+++++. .+++|+.|++ .+..+ ++|++|++++|
T Consensus 472 ~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N 548 (768)
T 3rgz_A 472 ILDFN--DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTN 548 (768)
T ss_dssp ECCSS--CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSS
T ss_pred EecCC--cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCC
Confidence 66666 3444556666666666666666522 3455666655 35566 67777777777
Q ss_pred cCCCCCccc----------------------------------------------------------------------c
Q 045751 370 ELMEDPMPT----------------------------------------------------------------------L 379 (492)
Q Consensus 370 ~l~~~~~~~----------------------------------------------------------------------l 379 (492)
.+.+..|.. +
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 665443322 2
Q ss_pred cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCc
Q 045751 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFK 459 (492)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 459 (492)
+.+++|+.|++++|.+++.. +..++.+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+.++++|+
T Consensus 629 ~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hccccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 33566777777777777654 55677778888888888744447777788888888888888877777888888888888
Q ss_pred EEEecCCC---------------------------HHHHHHhcccCCCceeeeecCCCC
Q 045751 460 KLELWRPQ---------------------------PELRQKLRDFKDKEQYNIQLYPYG 491 (492)
Q Consensus 460 ~L~l~~c~---------------------------~~~~~~~~~~~~~~~~~i~~ip~~ 491 (492)
+|++++|+ .-+ ..|....+++|++++|+|..
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-------------
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCcccc
Confidence 88887752 001 25666789999999999864
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.9e-30 Score=270.08 Aligned_cols=325 Identities=19% Similarity=0.118 Sum_probs=201.1
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~ 213 (492)
.+..++++.+..+.+..++...+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.+ |..|+.+++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 34567777777666666665555 677777777777654 24455667777777777777777644 566777777
Q ss_pred cCEEEccCCCCccCchhHHhcCCCccEEecCCCccc--chHHHhhcccccccccccccccCCCCCccccCCc--------
Q 045751 214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIH--HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLE-------- 283 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~-------- 283 (492)
|++|++++|.+..++...|+++++|++|++++|.+. .+|..++++++|++|++++|.+.+..|..++.++
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 777777777776555332367777777777777664 3566666777777777766665543333222111
Q ss_pred -------------------ccceeecCCC---------------------------------------------------
Q 045751 284 -------------------NLNFISALHP--------------------------------------------------- 293 (492)
Q Consensus 284 -------------------~L~~l~~~~~--------------------------------------------------- 293 (492)
+|+.+++++.
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 1222221110
Q ss_pred -----------------------------------------------------Cccchh--------------------h
Q 045751 294 -----------------------------------------------------RCCTPD--------------------I 300 (492)
Q Consensus 294 -----------------------------------------------------~~~~~~--------------------~ 300 (492)
...++. .
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECC
T ss_pred eeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchh
Confidence 000011 0
Q ss_pred hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe------------ecCCCCC
Q 045751 301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL------------DEYQFPP 359 (492)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l------------~~~~lp~ 359 (492)
+..+++|+.|++++|.-......+..+..+++|+.|+++++. .+++|+.|++ .+..+ +
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-E 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-T
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-c
Confidence 223334444444444101111125666777777777777632 4567777766 23456 7
Q ss_pred CceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEE
Q 045751 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLI 438 (492)
Q Consensus 360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~ 438 (492)
+|++|++++|.+.+..+..++++++|+.|++++|.+.+...+..++.+++|+.|++++| .++.+ |..++.+++|+.|+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEE
Confidence 78888888887766677777788888888888777765444556677788888888887 55544 34567778888888
Q ss_pred EeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 439 IDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 439 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+++|......|..+.++++|++|++++|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 88877666667777777778888777775
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.1e-29 Score=258.03 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=257.4
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~ 213 (492)
.+.+++++.+..+.+....+..+ +++|++|++++|... ....+..|.++++|++|++++|.++.+ |..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 45789999999888887766666 899999999998764 234567789999999999999999844 788999999
Q ss_pred cCEEEccCCCCcc-Cchh-HHhcCCCccEEecCCCcccch-HHH-hhcccccccccccccccCCCCCccccCC--cccce
Q 045751 214 LRYLKLNIPSLKS-LPSS-FLSSISNLYTLDMPFSYIHHT-ADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSL--ENLNF 287 (492)
Q Consensus 214 L~~L~l~~~~i~~-lp~~-~~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~~ 287 (492)
|++|++++|.+.. +|.. .|+++++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+..+ .+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999999984 4433 238999999999999988777 544 7899999999999999988888888775 67888
Q ss_pred eecCCC--Cccchh--------hhCCCcccceEEeeeccCcchhhHHHHhhcC---CCCCeEEeecCC------------
Q 045751 288 ISALHP--RCCTPD--------ILGRLPNLRKLRIHGDLSNNQSLLSKSLYKL---SSLESLKLVNES------------ 342 (492)
Q Consensus 288 l~~~~~--~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~------------ 342 (492)
+++++. ...... .+..+++|+.|++++| ...+..+..+... ++|+.|+++++.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 888741 111110 0335688999999999 5666777666554 778888877421
Q ss_pred ----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCccc
Q 045751 343 ----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT 401 (492)
Q Consensus 343 ----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 401 (492)
.+++|+.|++ +++.+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~ 340 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-S 340 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-G
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-h
Confidence 1257777777 46778 89999999999998888888999999999999999886533 5
Q ss_pred ccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 402 CGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 402 ~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..++.+++|+.|++++| .++.+ |..+..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus 341 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 56788999999999998 66766 5678999999999999998665444467899999999999865
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=255.11 Aligned_cols=312 Identities=21% Similarity=0.187 Sum_probs=252.9
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccC
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNI 221 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~ 221 (492)
.+.........++ ..+.++++.|++++|.+. ...+..|.++++|++|+|++|.++.+ |..|..+++|++|++++
T Consensus 15 ~v~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFVAVP-EGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCSSCC-SCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCcCC-CCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4444433444444 334779999999999886 35567889999999999999999855 78899999999999999
Q ss_pred CCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccch
Q 045751 222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTP 298 (492)
Q Consensus 222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~ 298 (492)
|.+..+|...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|..+..+++|+.|++++ ....+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999999988779999999999999988766 45689999999999999999888888899999999999974 344555
Q ss_pred hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccc
Q 045751 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT 378 (492)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~ 378 (492)
..+..+++|+.|++++| ......+..+..+++|+.|++++ ++.+..+.-..... .+|++|++++|.+.......
T Consensus 170 ~~l~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~---~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLEISH---WPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp HHHTTCTTCCEEEEESC--CCCEECTTCSCSCTTCCEEEEEC---CTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHH
T ss_pred hHhcccCCCcEEeCCCC--cCcEeChhhcccCcccceeeCCC---CccccccCcccccC-ccccEEECcCCcccccCHHH
Confidence 55899999999999998 34444556788899999999994 55555554333344 68999999999987666677
Q ss_pred ccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCC
Q 045751 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKR 457 (492)
Q Consensus 379 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 457 (492)
+.++++|+.|++++|.+.+.. ...+..+++|+.|++++| .+..+ +..+..+++|+.|++++|......+..+..+++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred hcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 899999999999999887533 445788999999999998 66655 556889999999999999766544456789999
Q ss_pred CcEEEecCCC
Q 045751 458 FKKLELWRPQ 467 (492)
Q Consensus 458 L~~L~l~~c~ 467 (492)
|++|++++++
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 9999999876
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=261.22 Aligned_cols=323 Identities=19% Similarity=0.128 Sum_probs=202.7
Q ss_pred CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhcccccc
Q 045751 138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFL 214 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L 214 (492)
+..++++.+..+.+..+....+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.++ ..|+.+++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 4456677776555655555455 677777777766554 234455666666666666666666443 556666666
Q ss_pred CEEEccCCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccC-----------
Q 045751 215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGS----------- 281 (492)
Q Consensus 215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~----------- 281 (492)
++|++++|.+..++...|+++++|++|++++|.+.. +|..++++++|++|++++|.+.+..|..++.
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 666666666665554222666666666666665543 4555666666666666666554332222222
Q ss_pred --------------------------------------------------------------------------------
Q 045751 282 -------------------------------------------------------------------------------- 281 (492)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (492)
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence
Q ss_pred ------------------CcccceeecCC--CCccchhhh----------------------------------------
Q 045751 282 ------------------LENLNFISALH--PRCCTPDIL---------------------------------------- 301 (492)
Q Consensus 282 ------------------l~~L~~l~~~~--~~~~~~~~l---------------------------------------- 301 (492)
+++|+.+++++ ....+.. +
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccCCccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 22223332221 0000000 1
Q ss_pred --CCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEEe------------ecCCCC
Q 045751 302 --GRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIVL------------DEYQFP 358 (492)
Q Consensus 302 --~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l------------~~~~lp 358 (492)
..+++|+.|++++|........+..+..+++|+.|+++++. .+++|+.|++ .+..+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l- 420 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 420 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-
T ss_pred ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-
Confidence 22334444444444111111124556667777777776532 5667777776 24466
Q ss_pred CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEccCccccccEE
Q 045751 359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECL 437 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L 437 (492)
++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..++..+..+++|+.|++++| .++.+ |..++.+++|+.|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEE
Confidence 788888888888777777788888999999999888764445667788999999999998 56655 6678899999999
Q ss_pred EEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 438 IIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 438 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
++++|......|..+.++++|++|++++|+
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999998666556678899999999999865
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.4e-29 Score=271.35 Aligned_cols=318 Identities=17% Similarity=0.145 Sum_probs=180.3
Q ss_pred CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccccc
Q 045751 138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLFFL 214 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L 214 (492)
..+++++.+..+......+. + +++|++|++++|... ...+..+.++++|++|++++|.++ .+|.. .+++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence 45566666665554443333 3 666666666666654 244556666666666666666554 22221 34444
Q ss_pred CEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhcccccccccccccccCCCCCcc-ccCCcccceeecC
Q 045751 215 RYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRND-CGSLENLNFISAL 291 (492)
Q Consensus 215 ~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~l~~~ 291 (492)
++|++++|.+. .+|..++..+++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++.+++|+.++++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 44444444444 444433111244444444444332 33333444444444444444443334433 3344444444443
Q ss_pred CC---CccchhhhCCCc-ccceEEeeeccCcchhhHHHHhhc--CCCCCeEEeecCC----------CCCCccEEEe---
Q 045751 292 HP---RCCTPDILGRLP-NLRKLRIHGDLSNNQSLLSKSLYK--LSSLESLKLVNES----------KMPRLSKIVL--- 352 (492)
Q Consensus 292 ~~---~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~----------~~~~L~~L~l--- 352 (492)
+. ...+.. +..++ +|+.|++++| ...+.++..+.. +++|+.|+++++. .+++|+.|++
T Consensus 352 ~n~l~~~~p~~-l~~l~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 352 FNEFSGELPES-LTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp SSEEEECCCTT-HHHHTTTCSEEECCSS--EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred CCccCccccHH-HHhhhcCCcEEEccCC--CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 21 111122 22222 3333333333 122222222222 3333333333210 2333333333
Q ss_pred --------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE
Q 045751 353 --------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW 424 (492)
Q Consensus 353 --------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 424 (492)
.++.+ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|.....+
T Consensus 429 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 429 YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcC
Confidence 45667 78888888888888788888888888888888888887654 556778889999999988544477
Q ss_pred EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 425 TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 425 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8888889999999999998887888889999999999998874
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.4e-29 Score=265.37 Aligned_cols=316 Identities=14% Similarity=0.116 Sum_probs=221.6
Q ss_pred CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCC-----C-----------------------------------
Q 045751 139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHH-----L----------------------------------- 176 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~-----~----------------------------------- 176 (492)
.+++.|.+..+......+..+ +++|++|++++|.... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 678999998777765555666 9999999999884300 0
Q ss_pred ---------------------------------CchhHHHHhccCCcEEEEEecCCcCCC------------------Cc
Q 045751 177 ---------------------------------DPLDCEKICKMFKFLRVLDLGSLVLSQ------------------LP 205 (492)
Q Consensus 177 ---------------------------------~~~~~~~~~~~~~~L~~L~L~~~~l~~------------------l~ 205 (492)
.....+..+.++++|++|+|++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 000144568899999999999999997 99
Q ss_pred hhhc--cccccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCc-cc--chHHHhhcc------cccccccccccccCC
Q 045751 206 SGIE--NLFFLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSY-IH--HTADVFWEM------NKLRHLNFGLFTLPA 273 (492)
Q Consensus 206 ~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~~~~ 273 (492)
..++ ++++|++|++++|.+. .+|..+ +++++|++|++++|. +. .+|..++.+ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 9998 9999999999999877 888888 999999999999997 86 489888887 99999999999997
Q ss_pred CCCc--cccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCC-CCeEEeecCC------
Q 045751 274 YPRN--DCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSS-LESLKLVNES------ 342 (492)
Q Consensus 274 ~~p~--~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~------ 342 (492)
.+|. .++++++|+.+++++ ....++. ++.+++|+.|++++| ....+|..+..+++ |+.|+++++.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~L~~N---~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYN---QITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCC-CEEEEEESEEECCSS---EEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhh-hCCCCCCCEEECCCC---ccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 8898 899999999999985 2213335 888899999999988 23377778888888 9999988732
Q ss_pred -----CCCCccEEEe-----------ecC-------CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCc
Q 045751 343 -----KMPRLSKIVL-----------DEY-------QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRK 399 (492)
Q Consensus 343 -----~~~~L~~L~l-----------~~~-------~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 399 (492)
.+++|+.|++ .+. .+ ++|++|++++|.+.......+..+++|+.|++++|.++...
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 1235666766 122 34 47777777777765433333445666666666666655211
Q ss_pred ccccCC-------CCccccEEeecccCCcceEEEccC--ccccccEEEEeecCCcCccchhccCCCCCcEEEec
Q 045751 400 LTCGSH-------GFPKLKVLHLKSMLWLEEWTMGTG--AMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELW 464 (492)
Q Consensus 400 ~~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 464 (492)
...+. .+++|+.|++++| .++.+|..+. .+++|+.|++++|.... +|..+.++++|++|+++
T Consensus 474 -~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 474 -KNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp -SSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred -HHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 11111 1125555555555 4445554444 55555555555555443 55555555555555553
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=9e-29 Score=266.06 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=131.1
Q ss_pred HHHHhccCCcEEEEEecCCcCCC------------------Cchhhc--cccccCEEEccCCCCc-cCchhHHhcCCCcc
Q 045751 181 CEKICKMFKFLRVLDLGSLVLSQ------------------LPSGIE--NLFFLRYLKLNIPSLK-SLPSSFLSSISNLY 239 (492)
Q Consensus 181 ~~~~~~~~~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~ 239 (492)
.+..+.++++|++|+|++|.++. +|..++ .+++|++|++++|.+. .+|..+ +++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 45678899999999999999987 898887 9999999999999876 888887 9999999
Q ss_pred EEecCCCc-cc--chHHHhhccc-------ccccccccccccCCCCCc--cccCCcccceeecCC-CCccchhhhCCCcc
Q 045751 240 TLDMPFSY-IH--HTADVFWEMN-------KLRHLNFGLFTLPAYPRN--DCGSLENLNFISALH-PRCCTPDILGRLPN 306 (492)
Q Consensus 240 ~L~L~~~~-l~--~lp~~~~~l~-------~L~~L~L~~~~~~~~~p~--~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~ 306 (492)
+|++++|. +. .+|..+++++ +|++|++++|.+. .+|. .++++++|+.|++++ ....++. ++.+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~-~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCC-CCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchh-hcCCCc
Confidence 99999997 76 4898888887 9999999999987 8888 899999999999984 2224445 888999
Q ss_pred cceEEeeeccCcchhhHHHHhhcCCC-CCeEEeecC
Q 045751 307 LRKLRIHGDLSNNQSLLSKSLYKLSS-LESLKLVNE 341 (492)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~ 341 (492)
|+.|++++| ... .+|..+..+++ |+.|+++++
T Consensus 597 L~~L~Ls~N--~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 597 LTDLKLDYN--QIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ESEEECCSS--CCS-CCCTTSCEECTTCCEEECCSS
T ss_pred ceEEECcCC--ccc-cchHHHhhccccCCEEECcCC
Confidence 999999988 333 77777888888 888888873
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.2e-28 Score=260.11 Aligned_cols=315 Identities=16% Similarity=0.168 Sum_probs=221.2
Q ss_pred CCCCeeEEEEecCCCCc------------------cccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEE
Q 045751 137 SRKMIKRLTANVNLSEL------------------DSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLD 195 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~------------------~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 195 (492)
...+++.+.+..+.... ++.... +++|++|++++|.... ..+..+.++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence 34567777777666655 332211 6778888887776541 3446677777777777
Q ss_pred ecCCc-CC--CCchhhccc------cccCEEEccCCCCccCch--hHHhcCCCccEEecCCCccc-chHHHhhccccccc
Q 045751 196 LGSLV-LS--QLPSGIENL------FFLRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFSYIH-HTADVFWEMNKLRH 263 (492)
Q Consensus 196 L~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 263 (492)
+++|. ++ .+|..++.+ ++|++|++++|.++.+|. .+ +++++|++|++++|.+. .+| .++.+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 77776 66 367766665 777777777777777776 55 77777777777777776 777 6777777777
Q ss_pred ccccccccCCCCCccccCCcc-cceeecCC--CCccchhhhCCCc--ccceEEeeeccCcchhhHHHHhh-------cCC
Q 045751 264 LNFGLFTLPAYPRNDCGSLEN-LNFISALH--PRCCTPDILGRLP--NLRKLRIHGDLSNNQSLLSKSLY-------KLS 331 (492)
Q Consensus 264 L~L~~~~~~~~~p~~~~~l~~-L~~l~~~~--~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~l~-------~l~ 331 (492)
|++++|.+. .+|..+..+++ |+.|++++ ....+.. +..++ +|+.|++++| ...+..|..+. .++
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCC
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCC--cCCCcchhhhcccccccccCC
Confidence 777777765 66777777777 77777763 2222222 44433 6777777776 45555555555 556
Q ss_pred CCCeEEeecCC----------CCCCccEEEe---ecCCCC--------------CCceEEEEecccCCCCCccccc--CC
Q 045751 332 SLESLKLVNES----------KMPRLSKIVL---DEYQFP--------------PSLTHLSFSNTELMEDPMPTLE--KL 382 (492)
Q Consensus 332 ~L~~L~l~~~~----------~~~~L~~L~l---~~~~lp--------------~~L~~L~L~~~~l~~~~~~~l~--~l 382 (492)
+|+.|+++++. .+++|+.|++ .+..+| ++|++|++++|.+. ..+..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 67777776522 3556666665 111111 28999999999986 5666676 89
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecc------cCCcceEEEccCccccccEEEEeecCCcCccchhccCCC
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVK 456 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 456 (492)
++|+.|++++|.+++ ++..+..+++|+.|++++ |.....+|..++.+++|+.|++++|.. +.+|..+. +
T Consensus 513 ~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 587 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P 587 (636)
T ss_dssp TTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred CCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence 999999999999886 466677899999999954 434557788889999999999999987 78888765 7
Q ss_pred CCcEEEecCCC
Q 045751 457 RFKKLELWRPQ 467 (492)
Q Consensus 457 ~L~~L~l~~c~ 467 (492)
+|+.|++++|+
T Consensus 588 ~L~~L~Ls~N~ 598 (636)
T 4eco_A 588 NISVLDIKDNP 598 (636)
T ss_dssp TCCEEECCSCT
T ss_pred cCCEEECcCCC
Confidence 99999999986
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.6e-28 Score=244.20 Aligned_cols=302 Identities=20% Similarity=0.161 Sum_probs=201.8
Q ss_pred CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751 139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR 215 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~ 215 (492)
..++++.+..+.+..++...+ +++|++|+++++.+. ...+..|..+++|++|++++|.++.++ ..++.+++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 456666666554555554444 666666666666654 233445666666666666666666443 4456666666
Q ss_pred EEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCCCC
Q 045751 216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR 294 (492)
Q Consensus 216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~ 294 (492)
+|++++|.+..+|..+|+++++|++|++++|.+..++ ..+..+++|++|++++|.+.+. .++.+++|+.+++++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n- 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN- 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS-
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc-
Confidence 6666666666666665566666666666666665553 3366666666666666665432 2334556666666431
Q ss_pred ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751 295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED 374 (492)
Q Consensus 295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~ 374 (492)
.+.. +...++|+.|++++|. ...++. ...++|+.|+++++ .+.... ++..+ ++|++|++++|.+.+.
T Consensus 197 -~l~~-~~~~~~L~~L~l~~n~---l~~~~~--~~~~~L~~L~l~~n----~l~~~~-~l~~l-~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 197 -LLST-LAIPIAVEELDASHNS---INVVRG--PVNVELTILKLQHN----NLTDTA-WLLNY-PGLVEVDLSYNELEKI 263 (390)
T ss_dssp -CCSE-EECCSSCSEEECCSSC---CCEEEC--CCCSSCCEEECCSS----CCCCCG-GGGGC-TTCSEEECCSSCCCEE
T ss_pred -cccc-cCCCCcceEEECCCCe---eeeccc--cccccccEEECCCC----CCcccH-HHcCC-CCccEEECCCCcCCCc
Confidence 2222 3444566666666662 111121 12356666666642 122111 57778 8999999999999877
Q ss_pred CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751 375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS 454 (492)
Q Consensus 375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 454 (492)
.+..+.++++|+.|++++|.+.+ ++.....+++|+.|++++| .++.+|..+..+++|+.|++++|+.. .+| +..
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~ 337 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LST 337 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCT
T ss_pred ChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chh
Confidence 78889999999999999998865 3445678999999999998 77788888889999999999999855 454 678
Q ss_pred CCCCcEEEecCCC
Q 045751 455 VKRFKKLELWRPQ 467 (492)
Q Consensus 455 l~~L~~L~l~~c~ 467 (492)
+++|++|++++++
T Consensus 338 ~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 338 HHTLKNLTLSHND 350 (390)
T ss_dssp TCCCSEEECCSSC
T ss_pred hccCCEEEcCCCC
Confidence 9999999999987
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.7e-28 Score=256.79 Aligned_cols=247 Identities=19% Similarity=0.182 Sum_probs=119.3
Q ss_pred cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC
Q 045751 214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP 293 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~ 293 (492)
|+.|++++|.+..++...|+++++|++|++++|.+..+|..+..+++|++|++++|.+.+..|..+..+++|+.+++++.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 33344444444444443335555555555555555555555555555555555555554444444555555555555431
Q ss_pred ---CccchhhhCCCcccceEEeeeccCcchhhH--HHHhhcCCCCCeEEeecCC----------CCCCccEEEe------
Q 045751 294 ---RCCTPDILGRLPNLRKLRIHGDLSNNQSLL--SKSLYKLSSLESLKLVNES----------KMPRLSKIVL------ 352 (492)
Q Consensus 294 ---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l------ 352 (492)
...+...++.+++|++|++++|. ..... +..+..+++|+.|+++++. .+++|+.|++
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CcccccchhhhhccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 11222224445555555555542 11111 3344455555555554421 3344444444
Q ss_pred ------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCccc--ccCCCCccccEEeecccCCcceE
Q 045751 353 ------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLT--CGSHGFPKLKVLHLKSMLWLEEW 424 (492)
Q Consensus 353 ------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~l 424 (492)
.+..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+..++ ..+..+++|+.|++++| .++.+
T Consensus 414 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 491 (606)
T 3t6q_A 414 VKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI 491 (606)
T ss_dssp CCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEE
T ss_pred CcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCcc
Confidence 13445 5666666666665555555556666666666666655432211 22445555556666555 33333
Q ss_pred -EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecC
Q 045751 425 -TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWR 465 (492)
Q Consensus 425 -~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 465 (492)
|..++.+++|+.|++++|......|..+.++++| .|++++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 3345555555555555555444444444444444 444433
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=6.3e-28 Score=253.97 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=56.4
Q ss_pred CCceEEEEecccCCCCCcc-cccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc-eEE--EccCccccc
Q 045751 359 PSLTHLSFSNTELMEDPMP-TLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-EWT--MGTGAMPKL 434 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~--~~~~~l~~L 434 (492)
++|++|++++|.+.+..+. .+.++++|+.|++++|.+.+.. +..++.+++|+.|++++|.... .++ ..+..+++|
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 3444444444443332222 2444455555555544443322 2334556666666666652222 121 235566777
Q ss_pred cEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 435 ECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 435 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+.|++++|......|..+..+++|++|++++|.
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 777777776555556667777777777777764
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.1e-28 Score=254.47 Aligned_cols=289 Identities=19% Similarity=0.200 Sum_probs=173.6
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.++++.+++.++... .+++..+.++++|++|+|++|.++.++ ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 344555555544433 233344445555555555555554332 344555555555555555554444433555555
Q ss_pred cEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751 239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS 317 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (492)
++|++++|.+..+|.. ++++++|++|++++|.+.+..|..++.+++|+.|++++..-.... ++.+++|+.|++++|.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~- 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL- 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc-
Confidence 5555555555444443 244555555555555554444444555555555555431111111 3344445555554441
Q ss_pred cchhhHHHHhhcCCCCCeEEeecCC-------CCCCccEEEe---------ecCCCCCCceEEEEecccCCCCCcccccC
Q 045751 318 NNQSLLSKSLYKLSSLESLKLVNES-------KMPRLSKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEK 381 (492)
Q Consensus 318 ~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~ 381 (492)
.. .+...++|+.|+++++. ..++|+.|++ ++..+ ++|++|++++|.+.+..+..+++
T Consensus 204 -l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 204 -LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTT
T ss_pred -cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhcC
Confidence 11 11223344444444311 2233444443 56778 89999999999998888888999
Q ss_pred CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEE
Q 045751 382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKL 461 (492)
Q Consensus 382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 461 (492)
+++|+.|++++|.+++ ++.....+++|+.|+|++| .+..+|..++.+++|+.|++++|... .+| +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEE
Confidence 9999999999998876 3555677999999999998 67788888889999999999999865 344 6788999999
Q ss_pred EecCCC
Q 045751 462 ELWRPQ 467 (492)
Q Consensus 462 ~l~~c~ 467 (492)
++++|+
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 999987
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=8.3e-28 Score=250.00 Aligned_cols=321 Identities=20% Similarity=0.157 Sum_probs=229.4
Q ss_pred CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccccc
Q 045751 138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFL 214 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L 214 (492)
...++++.+..+.+....+..+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.++. .++.+++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4689999999888877776666 899999999999876 3556778999999999999999997665 48999999
Q ss_pred CEEEccCCCCcc--CchhHHhcCCCccEEecCCCc-ccchH-HHhhcccccccccccccccCCCCCccccCCcccceeec
Q 045751 215 RYLKLNIPSLKS--LPSSFLSSISNLYTLDMPFSY-IHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISA 290 (492)
Q Consensus 215 ~~L~l~~~~i~~--lp~~~~~~l~~L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~ 290 (492)
++|++++|.+.. .|..+ +++++|++|++++|. ++.+| ..+..+++|++|++++|.+.+..|..++.+++|+.+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999999999984 45666 999999999999996 67776 46899999999999999998888888877776666665
Q ss_pred CC--CCccchhhhCCCcccceEEeeeccC-------------------------c-------------------------
Q 045751 291 LH--PRCCTPDILGRLPNLRKLRIHGDLS-------------------------N------------------------- 318 (492)
Q Consensus 291 ~~--~~~~~~~~l~~l~~L~~L~l~~~~~-------------------------~------------------------- 318 (492)
+. ....+...+..+++|+.|++++|.- .
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 42 1111111112233333333333310 0
Q ss_pred -------------------------------------------------------------chhhHHHHh-hcCCCCCeE
Q 045751 319 -------------------------------------------------------------NQSLLSKSL-YKLSSLESL 336 (492)
Q Consensus 319 -------------------------------------------------------------~~~~~~~~l-~~l~~L~~L 336 (492)
....+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 011123333 356677777
Q ss_pred EeecCC-------------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEE
Q 045751 337 KLVNES-------------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKL 390 (492)
Q Consensus 337 ~l~~~~-------------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l 390 (492)
+++++. .+++|+.|++ .+..+ ++|++|++++|.+. ..|..++.+++|+.|++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 776522 3456677766 14566 77788888887765 45556666777777777
Q ss_pred eccccCCCcc----------------cccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751 391 KKNSYLGRKL----------------TCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS 454 (492)
Q Consensus 391 ~~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 454 (492)
++|.+..... ......+++|+.|++++| .++.+|. ...+++|+.|++++|...+..|..+..
T Consensus 418 s~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 418 SSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp TTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred CCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 7766542110 001136788888888888 6777775 567899999999999877666667899
Q ss_pred CCCCcEEEecCCC
Q 045751 455 VKRFKKLELWRPQ 467 (492)
Q Consensus 455 l~~L~~L~l~~c~ 467 (492)
+++|+.|++++|+
T Consensus 496 l~~L~~L~l~~N~ 508 (549)
T 2z81_A 496 LTSLQKIWLHTNP 508 (549)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEEecCCC
Confidence 9999999999876
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=243.69 Aligned_cols=310 Identities=16% Similarity=0.120 Sum_probs=217.1
Q ss_pred CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccC
Q 045751 138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLR 215 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 215 (492)
+.+++++.+..+.+...++..+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 3789999999888888776666 899999999999886 35577899999999999999999988876 799999
Q ss_pred EEEccCCCCcc--CchhHHhcCCCccEEecCCCcccchHHHhhccccc--cccccccccc--CCCCCccccC--------
Q 045751 216 YLKLNIPSLKS--LPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL--RHLNFGLFTL--PAYPRNDCGS-------- 281 (492)
Q Consensus 216 ~L~l~~~~i~~--lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~L~~~~~--~~~~p~~~~~-------- 281 (492)
+|++++|.+.. +|..+ +++++|++|++++|.+.. ..+..+++| +.|++++|.+ .+..|..+..
T Consensus 94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 99999999985 56777 999999999999998765 346777777 8888888877 5555555444
Q ss_pred ------------------CcccceeecCCC--------------------------------------------------
Q 045751 282 ------------------LENLNFISALHP-------------------------------------------------- 293 (492)
Q Consensus 282 ------------------l~~L~~l~~~~~-------------------------------------------------- 293 (492)
+++|+.+++++.
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 223333322210
Q ss_pred ----------Cccchhhh-----CCCcccceEEeeeccCcchhhHH-HH---h----------------------hcCCC
Q 045751 294 ----------RCCTPDIL-----GRLPNLRKLRIHGDLSNNQSLLS-KS---L----------------------YKLSS 332 (492)
Q Consensus 294 ----------~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~-~~---l----------------------~~l~~ 332 (492)
+..+.. + +.+++|+.+++++|. . .+| .. + ..+++
T Consensus 251 ~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~--~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDV--F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp EEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECC--C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred EEEeecccccCccccc-hhhcccccCceeEeccccccc--e--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 111222 2 344444444444431 1 111 11 1 34556
Q ss_pred CCeEEeecCC----------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCcc-cccCCCccCeE
Q 045751 333 LESLKLVNES----------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPMP-TLEKLPLLQVL 388 (492)
Q Consensus 333 L~~L~l~~~~----------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L 388 (492)
|+.|+++++. .+++|+.|++ .+..+ ++|++|++++|.+.+..+. .+..+++|+.|
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 6666665521 3445555555 24556 6777777777776553443 35667777777
Q ss_pred EEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh-ccCCCCCcEEEecCCC
Q 045751 389 KLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ-LWSVKRFKKLELWRPQ 467 (492)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 467 (492)
++++|.+++.. +..+ .++|+.|++++| .++.+|..+..+++|+.|++++|... .+|.. +..+++|++|++++++
T Consensus 405 ~Ls~N~l~~~~-~~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 405 NMSSNILTDTI-FRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ECCSSCCCGGG-GGSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCCCCcch-hhhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 77777765433 1111 168999999988 77788887889999999999999755 68876 8899999999999876
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.3e-27 Score=230.89 Aligned_cols=299 Identities=16% Similarity=0.156 Sum_probs=234.5
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY 216 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 216 (492)
..+++++.+..+.+..++ ... +++|++|++++|.+.. ... +.++++|++|++++|.++.++ .+..+++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~----~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD----ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc----chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 457889999866666654 222 8999999999998762 222 889999999999999988876 5889999999
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCCC-cccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CC
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PR 294 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~ 294 (492)
|++++|.+..++. + ..+++|++|++++| .+..++. +..+++|++|++++|.+....+ +..+++|+.+++++ ..
T Consensus 115 L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh-h-ccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 9999999998887 5 89999999999999 4455544 8899999999999998754433 77799999999985 33
Q ss_pred ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751 295 CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED 374 (492)
Q Consensus 295 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~ 374 (492)
...+. +..+++|+.|++++|. .....+ +..+++|+.|+++++ .+..+. .+..+ ++|++|++++|.+...
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~--l~~~~~--~~~~~~L~~L~l~~n----~l~~~~-~~~~l-~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQ--ITDITP--VANMTRLNSLKIGNN----KITDLS-PLANL-SQLTWLEIGTNQISDI 258 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSC--CCCCGG--GGGCTTCCEEECCSS----CCCCCG-GGTTC-TTCCEEECCSSCCCCC
T ss_pred ccccc-ccCCCccceeecccCC--CCCCch--hhcCCcCCEEEccCC----ccCCCc-chhcC-CCCCEEECCCCccCCC
Confidence 34455 7888999999999983 322222 788899999999852 233222 36677 8999999999998653
Q ss_pred CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccC
Q 045751 375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWS 454 (492)
Q Consensus 375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 454 (492)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|......+..++.+++|+.|++++|+.....| +..
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred --hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 5688999999999999988764 236788999999999994333445567889999999999998665444 788
Q ss_pred CCCCcEEEecCCC
Q 045751 455 VKRFKKLELWRPQ 467 (492)
Q Consensus 455 l~~L~~L~l~~c~ 467 (492)
+++|++|++++|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 9999999999987
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2e-27 Score=255.57 Aligned_cols=311 Identities=14% Similarity=0.159 Sum_probs=248.7
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCC-CCCCCchhHHHHhc-------cCCcEEEEEecCCcCCCCch
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSE-SHHLDPLDCEKICK-------MFKFLRVLDLGSLVLSQLPS 206 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~-~~~~~~~~~~~~~~-------~~~~L~~L~L~~~~l~~l~~ 206 (492)
...+++.|.+..+......+..+ +++|++|++++|. +. ....+..+. .+++|++|++++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 35689999999776555555666 9999999999997 54 112444444 45599999999999999998
Q ss_pred --hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccc-cccccccccccCCCCCccccCCc
Q 045751 207 --GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNK-LRHLNFGLFTLPAYPRNDCGSLE 283 (492)
Q Consensus 207 --~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~-L~~L~L~~~~~~~~~p~~~~~l~ 283 (492)
.++.+++|++|++++|.+..+| .+ +++++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..+.
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 9999999999999999999999 66 9999999999999999999998999999 999999999987 8888887754
Q ss_pred --ccceeecCCC--Cccchh---hhC--CCcccceEEeeeccCcchhhHHHHh-hcCCCCCeEEeecCCCCCCccEEEee
Q 045751 284 --NLNFISALHP--RCCTPD---ILG--RLPNLRKLRIHGDLSNNQSLLSKSL-YKLSSLESLKLVNESKMPRLSKIVLD 353 (492)
Q Consensus 284 --~L~~l~~~~~--~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~L~~L~l~ 353 (492)
+|+.|++++. ...++. .+. .+++|+.|++++| ... .+|..+ ..+++|+.|++++ ..+..++-.
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N--~L~-~lp~~~~~~l~~L~~L~Ls~----N~L~~ip~~ 715 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN--EIQ-KFPTELFATGSPISTIILSN----NLMTSIPEN 715 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS--CCC-SCCHHHHHTTCCCSEEECCS----CCCSCCCTT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC--cCC-ccCHHHHccCCCCCEEECCC----CcCCccChH
Confidence 4999999842 112222 022 3458999999998 333 566554 5889999999985 234433221
Q ss_pred c--------CCCCCCceEEEEecccCCCCCccccc--CCCccCeEEEeccccCCCcccccCCCCccccEEeecc------
Q 045751 354 E--------YQFPPSLTHLSFSNTELMEDPMPTLE--KLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKS------ 417 (492)
Q Consensus 354 ~--------~~lp~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------ 417 (492)
+ .++ ++|++|+|++|.+. ..+..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|+|++
T Consensus 716 ~~~~~~~~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 716 SLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp SSSCTTSCCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred Hhcccccccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCccc
Confidence 1 223 48999999999986 6677776 99999999999999987 466678999999999987
Q ss_pred cCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 418 MLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 418 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|+|++|+
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 433457788899999999999999987 78998765 699999999997
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.4e-26 Score=235.60 Aligned_cols=302 Identities=17% Similarity=0.173 Sum_probs=183.6
Q ss_pred CCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEE
Q 045751 139 KMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYL 217 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 217 (492)
.+++++.+..+.+..++ ... +++|++|++++|.+.. ..+ +.++++|++|++++|.++.++. ++.+++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 56888888766665554 222 8889999998888762 222 7888899999999888887776 8888899999
Q ss_pred EccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCcc
Q 045751 218 KLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCC 296 (492)
Q Consensus 218 ~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~ 296 (492)
++++|.+..++. + .++++|++|++++|.+..++. +..+++|++|++++ .+.+ .+ .+.++++|+.+++++ ....
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCC
Confidence 998888888776 5 888889999888887777664 55565555555542 2211 11 144455555555542 1112
Q ss_pred chhhhCCCcccceEEeeeccCcchhhHH--------------------HHhhcCCCCCeEEeecCC--------CCCCcc
Q 045751 297 TPDILGRLPNLRKLRIHGDLSNNQSLLS--------------------KSLYKLSSLESLKLVNES--------KMPRLS 348 (492)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~--------~~~~L~ 348 (492)
++. +..+++|+.|++++|. .....+ ..+..+++|+.|+++++. .+++|+
T Consensus 192 ~~~-l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 268 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred Chh-hccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCC
Confidence 222 4444444444444441 111111 234455555555555421 344555
Q ss_pred EEEe---------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751 349 KIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML 419 (492)
Q Consensus 349 ~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 419 (492)
.|++ .+..+ ++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+... +..+++|+.|++++|
T Consensus 269 ~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n- 341 (466)
T 1o6v_A 269 ELKLGANQISNISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN- 341 (466)
T ss_dssp EEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-
T ss_pred EEECCCCccCccccccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-
Confidence 5554 23344 556666666665543222 5566666666666666654331 456667777777766
Q ss_pred CcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 420 WLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 420 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.++.++ .+..+++|+.|++++|......| +..+++|+.|++++|+
T Consensus 342 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 342 KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 445442 46667777777777776554433 6677777777777764
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=5.1e-27 Score=238.26 Aligned_cols=312 Identities=14% Similarity=0.100 Sum_probs=247.2
Q ss_pred EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CC-chhhccccccCEEEccC
Q 045751 144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QL-PSGIENLFFLRYLKLNI 221 (492)
Q Consensus 144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l-~~~~~~l~~L~~L~l~~ 221 (492)
+.........++. +.++|++|++++|.+. ...+..|.++++|++|++++|.+. .+ +..+..+++|++|++++
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3333334444442 4689999999999886 355678999999999999999986 55 56789999999999999
Q ss_pred CCCccC-chhHHhcCCCccEEecCCCcccc-hHHH--hhcccccccccccccccCCCCCcc-ccCCcccceeecCCC--C
Q 045751 222 PSLKSL-PSSFLSSISNLYTLDMPFSYIHH-TADV--FWEMNKLRHLNFGLFTLPAYPRND-CGSLENLNFISALHP--R 294 (492)
Q Consensus 222 ~~i~~l-p~~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~l~~~~~--~ 294 (492)
|.+..+ |..+ +++++|++|++++|.+.. +|.. +..+++|++|++++|.+.+..|.. +..+++|+.+++++. .
T Consensus 89 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999966 5555 999999999999998875 4554 889999999999999998887876 788999999999852 2
Q ss_pred ccchhhhCCC--cccceEEeeeccCcchh--------hHHHHhhcCCCCCeEEeecCC-------------CCCCccEEE
Q 045751 295 CCTPDILGRL--PNLRKLRIHGDLSNNQS--------LLSKSLYKLSSLESLKLVNES-------------KMPRLSKIV 351 (492)
Q Consensus 295 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~ 351 (492)
...+..+..+ .+|+.|++++|. ... .....+..+++|+.|+++++. ..++++.|.
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccChhhhhccccccccccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 2222225444 688899999884 211 112234466899999999742 237788887
Q ss_pred eec---------------------C--CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCc
Q 045751 352 LDE---------------------Y--QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP 408 (492)
Q Consensus 352 l~~---------------------~--~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 408 (492)
+.- . .. ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..++
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 323 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLT 323 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCT
T ss_pred eccccccccccchhhhccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcc
Confidence 610 0 12 58999999999998888888999999999999999987543 55678899
Q ss_pred cccEEeecccCCcceE-EEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 409 KLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 409 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+|+.|++++| .++.+ +..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 324 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 9999999998 66766 4568899999999999998766668889999999999999986
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=244.81 Aligned_cols=312 Identities=17% Similarity=0.135 Sum_probs=211.7
Q ss_pred eEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEcc
Q 045751 142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLN 220 (492)
Q Consensus 142 r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~ 220 (492)
+++.+..+.+..++ ..+.++|+.|++++|.+. ...+..|.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip-~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP-KDLSQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCC-CSCCTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccc-ccccccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 56777766666655 333699999999999986 35667899999999999999999965 7889999999999999
Q ss_pred CCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccCCccc--ceeecCCC---
Q 045751 221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENL--NFISALHP--- 293 (492)
Q Consensus 221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L--~~l~~~~~--- 293 (492)
+|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..+..+++| +.+++++.
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 9999999875 79999999999998875 56889999999999999998865 345556666 88877631
Q ss_pred --Cccchh-------------------------hhCCCcccceEEeeecc----C-cchhhHHHHhhcCC----------
Q 045751 294 --RCCTPD-------------------------ILGRLPNLRKLRIHGDL----S-NNQSLLSKSLYKLS---------- 331 (492)
Q Consensus 294 --~~~~~~-------------------------~l~~l~~L~~L~l~~~~----~-~~~~~~~~~l~~l~---------- 331 (492)
...+.. .+..+++|+.|++++|. . ...+.++ .++.++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 111111 12235566666666551 0 0111111 333333
Q ss_pred -----------------CCCeEEeec----CC---C--------C--------------------------CCccEEEe-
Q 045751 332 -----------------SLESLKLVN----ES---K--------M--------------------------PRLSKIVL- 352 (492)
Q Consensus 332 -----------------~L~~L~l~~----~~---~--------~--------------------------~~L~~L~l- 352 (492)
+|+.|++++ +. . + .+++.|.+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence 444454443 11 0 1 12344433
Q ss_pred -------e-cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC-cccccCCCCccccEEeecccCCcce
Q 045751 353 -------D-EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR-KLTCGSHGFPKLKVLHLKSMLWLEE 423 (492)
Q Consensus 353 -------~-~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~ 423 (492)
. ...+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+. .++..++.+++|+.|++++| .+..
T Consensus 311 ~n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~ 388 (520)
T 2z7x_B 311 GTRMVHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSY 388 (520)
T ss_dssp SSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBC
T ss_pred CCccccccchhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCc
Confidence 0 1566 7889999999988877788888889999999988887752 12344677888888888887 4443
Q ss_pred -EEEc-cCccccccEEEEeecCCcC---------------------ccchhccCCCCCcEEEecCCC
Q 045751 424 -WTMG-TGAMPKLECLIIDPCAYLK---------------------RLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 424 -l~~~-~~~l~~L~~L~l~~c~~l~---------------------~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+|.. +..+++|+.|++++|.... .+|..+..+++|++|++++|.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 5543 4445555555555554333 455555556666666666654
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.2e-27 Score=249.82 Aligned_cols=317 Identities=15% Similarity=0.108 Sum_probs=224.9
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~ 213 (492)
...+++++.+..+.+..+.+..+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.++ ..++.+++
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 44567777777666666665555 777777777777765 244566777777777777777776554 55777777
Q ss_pred cCEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchH-HHhhccc-------------------------------
Q 045751 214 LRYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMN------------------------------- 259 (492)
Q Consensus 214 L~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~------------------------------- 259 (492)
|++|++++|.+. .+|..+ +++++|++|++++|.+..++ ..++.++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 777777777776 456666 77777777777777554432 1122221
Q ss_pred --------------------------------------------------------------------------------
Q 045751 260 -------------------------------------------------------------------------------- 259 (492)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (492)
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence
Q ss_pred -------------------ccccccccccccCCCCCc--------------------cccCCcccceeecCCCC--c---
Q 045751 260 -------------------KLRHLNFGLFTLPAYPRN--------------------DCGSLENLNFISALHPR--C--- 295 (492)
Q Consensus 260 -------------------~L~~L~L~~~~~~~~~p~--------------------~~~~l~~L~~l~~~~~~--~--- 295 (492)
+|+.|++++|.+ +.+|. .++.+++|+.+++++.. .
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred EEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence 223333333332 22221 12234556666665311 1
Q ss_pred cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC-----------CCCCccEEEe-----------e
Q 045751 296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-----------KMPRLSKIVL-----------D 353 (492)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l-----------~ 353 (492)
.+.. +..+++|+.|++++| ....+|..+..+++|+.|+++++. .+++|+.|++ .
T Consensus 368 ~~~~-~~~~~~L~~L~L~~n---~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 368 CSYS-DLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp CCHH-HHCCSCCCEEECCSC---SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred hhhh-hccCCcccEeECCCC---ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 1344 888999999999998 334456778889999999998721 5678888888 4
Q ss_pred cCCCCCCceEEEEecccCCCC-CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce-EEEccCcc
Q 045751 354 EYQFPPSLTHLSFSNTELMED-PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE-WTMGTGAM 431 (492)
Q Consensus 354 ~~~lp~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l 431 (492)
+..+ ++|++|++++|.+.+. .+..++++++|+.|++++|.+++.. +..+..+++|+.|++++| .++. .|..++.+
T Consensus 444 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 520 (606)
T 3vq2_A 444 FLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQL 520 (606)
T ss_dssp TTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCSCEEGGGTTTC
T ss_pred hcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCC-cCCCcCHHHccCC
Confidence 6678 8999999999998763 6778899999999999999887643 556789999999999999 5554 47779999
Q ss_pred ccccEEEEeecCCcCccchhccCCC-CCcEEEecCCC
Q 045751 432 PKLECLIIDPCAYLKRLPKQLWSVK-RFKKLELWRPQ 467 (492)
Q Consensus 432 ~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 467 (492)
++|+.|++++|... .+|..+..++ +|++|+++++|
T Consensus 521 ~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 521 YSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred CcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 99999999999854 7898888887 69999999865
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.3e-27 Score=246.06 Aligned_cols=312 Identities=17% Similarity=0.129 Sum_probs=214.3
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFL 214 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L 214 (492)
.+..++++.+..+.+..+++..+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.+|.. .+++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 34678899998788888776677 889999999998876 35567788899999999999998888876 78899
Q ss_pred CEEEccCCCCccCc--hhHHhcCCCccEEecCCCcccchHHHhhccccc--cccccccccc--CCCCCccccCC------
Q 045751 215 RYLKLNIPSLKSLP--SSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL--RHLNFGLFTL--PAYPRNDCGSL------ 282 (492)
Q Consensus 215 ~~L~l~~~~i~~lp--~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L--~~L~L~~~~~--~~~~p~~~~~l------ 282 (492)
++|++++|.+..+| ..+ +++++|++|++++|.+... .+..+++| +.|++++|.+ .+..|..+..+
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp SEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CEEECCCCCccccCchHhh-cccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 99999999988655 555 8999999999999877652 35555555 8888888776 55555444332
Q ss_pred --------------------cccceeecCCCCc-------cchhhhC---------------------------CCcccc
Q 045751 283 --------------------ENLNFISALHPRC-------CTPDILG---------------------------RLPNLR 308 (492)
Q Consensus 283 --------------------~~L~~l~~~~~~~-------~~~~~l~---------------------------~l~~L~ 308 (492)
++|+.+++++... .+.. +. ..++|+
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 2333333221100 0000 00 011333
Q ss_pred eEEeeeccCcchhhHH-------------------------------HHh----------------------hcCCCCCe
Q 045751 309 KLRIHGDLSNNQSLLS-------------------------------KSL----------------------YKLSSLES 335 (492)
Q Consensus 309 ~L~l~~~~~~~~~~~~-------------------------------~~l----------------------~~l~~L~~ 335 (492)
+|++++|. ..+.+| ..+ ..+++|+.
T Consensus 280 ~L~l~~n~--l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 280 YLNIYNLT--ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEE--ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred EEEEeccE--eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 33333331 111111 011 34556666
Q ss_pred EEeecCC----------CCCCccEEEe-------------ecCCCCCCceEEEEecccCCCCCc-ccccCCCccCeEEEe
Q 045751 336 LKLVNES----------KMPRLSKIVL-------------DEYQFPPSLTHLSFSNTELMEDPM-PTLEKLPLLQVLKLK 391 (492)
Q Consensus 336 L~l~~~~----------~~~~L~~L~l-------------~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~l~ 391 (492)
|+++++. .+++|+.|++ .+..+ ++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 6665421 3445555555 25567 788888888888876344 357788888888888
Q ss_pred ccccCCCcccccCCCC-ccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh-ccCCCCCcEEEecCCC
Q 045751 392 KNSYLGRKLTCGSHGF-PKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ-LWSVKRFKKLELWRPQ 467 (492)
Q Consensus 392 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 467 (492)
+|.+++.. ...+ ++|+.|++++| .++.+|..+..+++|+.|++++|... .+|.. +..+++|+.|++++++
T Consensus 437 ~n~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 437 SNMLTGSV----FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCGGG----GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCcch----hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 88876533 2233 69999999998 78889988889999999999999855 78876 8999999999999976
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.6e-27 Score=228.76 Aligned_cols=279 Identities=16% Similarity=0.189 Sum_probs=233.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|++|++.++.... . ..+..+++|++|++++|.++.++. +..+++|++|++++|.+..+| .+ .++++|+
T Consensus 43 l~~L~~L~l~~~~i~~----~--~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----I--QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCS
T ss_pred cccccEEEEeCCcccc----c--hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCC
Confidence 8999999999998862 2 248889999999999999998887 899999999999999999886 45 8999999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSN 318 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (492)
+|++++|.+..++. +..+++|++|++++|.....++ .+..+++|+.+++++ ....... +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-- 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-- 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--
Confidence 99999999988887 8999999999999997655544 488899999999985 3334444 8899999999999983
Q ss_pred chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751 319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398 (492)
Q Consensus 319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 398 (492)
. ..++. +..+++|+.|+++++ .+..+. .+..+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 189 l-~~~~~-~~~l~~L~~L~l~~n----~l~~~~-~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 189 I-EDISP-LASLTSLHYFTAYVN----QITDIT-PVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp C-CCCGG-GGGCTTCCEEECCSS----CCCCCG-GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred c-ccccc-ccCCCccceeecccC----CCCCCc-hhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 2 22332 788999999999852 222221 25677 899999999999865443 88999999999999988763
Q ss_pred cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 399 KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..+..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 259 ---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 34678999999999998 677664 47899999999999998877778889999999999999997
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.2e-26 Score=236.10 Aligned_cols=282 Identities=19% Similarity=0.183 Sum_probs=201.7
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
++++++|.+.++.... . ..+..+++|++|++++|.++.++. ++.+++|++|++++|.+..+++ + +++++|+
T Consensus 45 l~~l~~L~l~~~~i~~----l--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred hccccEEecCCCCCcc----C--cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCC
Confidence 6899999999988762 2 237889999999999999998887 9999999999999999998887 5 9999999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN 319 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 319 (492)
+|++++|.+..++. +.++++|++|++++|.+.+ ++ .++.+++|+.+++.+....... ++.+++|+.|++++|. .
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~--l 189 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK--V 189 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC--C
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc--C
Confidence 99999999988876 9999999999999998864 33 4888999999999764455566 8999999999999984 2
Q ss_pred hhhHHHHhhcCCCCCeEEeecCC--------CCCCccEEEe---------ecCCCCCCceEEEEecccCCCCCcccccCC
Q 045751 320 QSLLSKSLYKLSSLESLKLVNES--------KMPRLSKIVL---------DEYQFPPSLTHLSFSNTELMEDPMPTLEKL 382 (492)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l 382 (492)
..+ ..+..+++|+.|+++++. .+++|+.|++ .+..+ ++|++|++++|.+.+..+ +..+
T Consensus 190 -~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 190 -SDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp -CCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTC
T ss_pred -CCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchh--hhcC
Confidence 222 247889999999998732 4567777776 34455 666777776666544332 5555
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecccC---------------------CcceEEEccCccccccEEEEee
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML---------------------WLEEWTMGTGAMPKLECLIIDP 441 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~l~~l~~~~~~l~~L~~L~l~~ 441 (492)
++|+.|++++|.+.+... +..+++|+.|++++|. .+..++. +..+++|+.|++++
T Consensus 265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 340 (466)
T ss_dssp TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence 666666666555544221 3344444444444441 2332222 44555555555555
Q ss_pred cCCcCccchhccCCCCCcEEEecCCC
Q 045751 442 CAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 442 c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|... .+ ..+.++++|+.|++++|+
T Consensus 341 n~l~-~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 341 NKVS-DV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SCCC-CC-GGGTTCTTCCEEECCSSC
T ss_pred CccC-Cc-hhhccCCCCCEEeCCCCc
Confidence 5433 22 245566666666666664
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=250.53 Aligned_cols=317 Identities=22% Similarity=0.221 Sum_probs=207.3
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~~ 213 (492)
.+..+++|.+..+.+..+.+..+ +++|++|++++|... ..+.+..|.++++|++|+|++|.++. .|..|+.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 56789999999888888877777 999999999998543 23456789999999999999999984 4788999999
Q ss_pred cCEEEccCCCCcc-Cchh-HHhcCCCccEEecCCCcccchH--HHhhcccccccccccccccCCCCCccccCC--cccce
Q 045751 214 LRYLKLNIPSLKS-LPSS-FLSSISNLYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYPRNDCGSL--ENLNF 287 (492)
Q Consensus 214 L~~L~l~~~~i~~-lp~~-~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~~ 287 (492)
|++|++++|.+.. +|.. .|+++++|++|++++|.+..++ ..++++++|++|++++|.+.+..|..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999999984 5554 2389999999999999886653 568999999999999999988888887776 77888
Q ss_pred eecCC---CCccchhhhCCCcc------cceEEeeeccCcchhhHHHHhh------------------------------
Q 045751 288 ISALH---PRCCTPDILGRLPN------LRKLRIHGDLSNNQSLLSKSLY------------------------------ 328 (492)
Q Consensus 288 l~~~~---~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~l~------------------------------ 328 (492)
++++. ....+.. ++.+.+ |+.|++++|. .....+..+.
T Consensus 179 L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 179 FSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred EECCCCccccccccc-hhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 88764 1222222 444443 8888888772 2222222221
Q ss_pred ------c--CCCCCeEEeecCC----------CCCCccEEEe-----------ecCCCCCCceEEEEecccCCCCCcccc
Q 045751 329 ------K--LSSLESLKLVNES----------KMPRLSKIVL-----------DEYQFPPSLTHLSFSNTELMEDPMPTL 379 (492)
Q Consensus 329 ------~--l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~l 379 (492)
. .++|+.|+++++. .+++|+.|++ .+..+ ++|++|++++|.+.+..+..+
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSC
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHh
Confidence 1 1455666655421 2344444444 23344 555555555555544445555
Q ss_pred cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccch---------
Q 045751 380 EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPK--------- 450 (492)
Q Consensus 380 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------- 450 (492)
.++++|+.|++++|.+.... +..+..+++|+.|++++| .++.++ .+++|+.|++++|... .+|.
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGNKLV-TLPKINLTANLIH 407 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESCCCC-CCCCCCTTCCEEE
T ss_pred cCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCCCcc-cccccccccceee
Confidence 55555555555555543322 223445555555555555 333222 2444555555444322 2221
Q ss_pred -------------hccCCCCCcEEEecCCC
Q 045751 451 -------------QLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 451 -------------~l~~l~~L~~L~l~~c~ 467 (492)
.+.++++|+.|++++|.
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCc
Confidence 23467788888887765
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8.8e-27 Score=248.56 Aligned_cols=321 Identities=18% Similarity=0.122 Sum_probs=181.0
Q ss_pred CCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccccc
Q 045751 138 RKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFL 214 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L 214 (492)
+.+++++.+..+.+..++...+ +++|++|++++|.+. ...+..|.++++|++|++++|.++.+|. .|+.+++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 4567777777666666665555 777777777777664 2444566677777777777777776664 46677777
Q ss_pred CEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCcccc--CCcccceeecC
Q 045751 215 RYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCG--SLENLNFISAL 291 (492)
Q Consensus 215 ~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~--~l~~L~~l~~~ 291 (492)
++|++++|.+..+++..|+++++|++|++++|.+... |..++++++|++|++++|.+.+..+..+. .+++|+.++++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 7777777777766544336667777777766655443 23355566666666666555443333222 23444444443
Q ss_pred CC--C---------------------------------------------------ccchhhhCCCcc--cceEEeeecc
Q 045751 292 HP--R---------------------------------------------------CCTPDILGRLPN--LRKLRIHGDL 316 (492)
Q Consensus 292 ~~--~---------------------------------------------------~~~~~~l~~l~~--L~~L~l~~~~ 316 (492)
+. . ...+..+..++. |+.|++++|
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n- 258 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN- 258 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-
Confidence 20 0 011111333332 666666666
Q ss_pred CcchhhHHHHhhcCCCCCeEEeecCC----------CCCCccEEEe--------------------ecCCCCCCceEEEE
Q 045751 317 SNNQSLLSKSLYKLSSLESLKLVNES----------KMPRLSKIVL--------------------DEYQFPPSLTHLSF 366 (492)
Q Consensus 317 ~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l--------------------~~~~lp~~L~~L~L 366 (492)
......+..++.+++|+.|+++++. .+++|+.|++ .+..+ ++|++|++
T Consensus 259 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l 336 (680)
T 1ziw_A 259 -NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNM 336 (680)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEEC
T ss_pred -CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEEC
Confidence 3333344556677777777776522 4556666655 23456 77888888
Q ss_pred ecccCCCCCcccccCCCccCeEEEeccccCCCccccc-CC--CCccccEEeecccCCcceE-EEccCccccccEEEEeec
Q 045751 367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCG-SH--GFPKLKVLHLKSMLWLEEW-TMGTGAMPKLECLIIDPC 442 (492)
Q Consensus 367 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~--~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c 442 (492)
++|.+.+..+..+.++++|+.|++++|.+....++.. +. ..++|+.|++++| .+..+ +..+..+++|+.|++++|
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCC
Confidence 8888877777777788888888887765432221110 00 1134555555554 23322 233445555555555555
Q ss_pred CCcCccc-hhccCCCCCcEEEecCC
Q 045751 443 AYLKRLP-KQLWSVKRFKKLELWRP 466 (492)
Q Consensus 443 ~~l~~lp-~~l~~l~~L~~L~l~~c 466 (492)
.....+| ..+..+++|++|++++|
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSC
T ss_pred cCccccCcccccCcccccEEecCCC
Confidence 5443333 34444555555555444
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.6e-26 Score=246.54 Aligned_cols=316 Identities=18% Similarity=0.138 Sum_probs=244.0
Q ss_pred EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCC
Q 045751 144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIP 222 (492)
Q Consensus 144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~ 222 (492)
+.........++ ..+.+++++|++++|.+. ...+..|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 9 ~~cs~~~L~~ip-~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 9 ADCSHLKLTQVP-DDLPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EECCSSCCSSCC-SCSCTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCCCCccccc-cccCCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 444434455554 333689999999999886 35566799999999999999999855 678899999999999999
Q ss_pred CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchh
Q 045751 223 SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPD 299 (492)
Q Consensus 223 ~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~ 299 (492)
.+..+|...|+++++|++|++++|.+..+| ..++++++|++|++++|.+.+..|..++++++|+.+++++ .....+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 999999865599999999999999998887 4689999999999999999888888899999999999985 2233333
Q ss_pred hhC--CCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC-------------CCCCccEEEe-----------e
Q 045751 300 ILG--RLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES-------------KMPRLSKIVL-----------D 353 (492)
Q Consensus 300 ~l~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~l-----------~ 353 (492)
.++ .+++|+.|++++| ...+..+..+..+++|+.|++.+.. ..++|+.|++ +
T Consensus 164 ~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHGGGTTCEESEEECTTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HhhccccccccEEECCCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 243 5689999999998 4555556667777777777776421 2356677766 3
Q ss_pred cCCCC-CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc-----eEEE-
Q 045751 354 EYQFP-PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE-----EWTM- 426 (492)
Q Consensus 354 ~~~lp-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~- 426 (492)
+..++ ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+.++++|+.|++++|..-. .+|.
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCccEEeccchhhhccccccccccc
Confidence 33441 24999999999887777778889999999999988876543 5557788899999998753211 2332
Q ss_pred ---ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 427 ---GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 427 ---~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 56788899999999888776666678888888888888764
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.4e-26 Score=239.04 Aligned_cols=308 Identities=19% Similarity=0.160 Sum_probs=231.0
Q ss_pred CCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccC
Q 045751 149 NLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSL 227 (492)
Q Consensus 149 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~l 227 (492)
+....++ ..+.++|++|++++|.+. ...+..|.++++|++|++++|.++.++ ..++.+++|++|++++|.+..+
T Consensus 15 ~~l~~ip-~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 15 RSFTSIP-SGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SCCSSCC-SCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred Ccccccc-ccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 3444444 233689999999999876 345567899999999999999999554 7899999999999999999988
Q ss_pred chhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCC-ccccCCcccceeecCC--CCccchhhhC
Q 045751 228 PSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLNFISALH--PRCCTPDILG 302 (492)
Q Consensus 228 p~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~l~~~~--~~~~~~~~l~ 302 (492)
++..|+++++|++|++++|.+.. .|..++++++|++|++++|...+.+| ..+..+++|+.+++++ .....+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 88755999999999999998874 45679999999999999998656665 5788899999999974 2222333389
Q ss_pred CCcccceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCC-------------CCCCccEEEe---------------e
Q 045751 303 RLPNLRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNES-------------KMPRLSKIVL---------------D 353 (492)
Q Consensus 303 ~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~-------------~~~~L~~L~l---------------~ 353 (492)
.+++|+.|+++.|. ...++.. +..+++|+.|+++++. .+++|+.|.+ .
T Consensus 170 ~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 170 SIRDIHHLTLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TCSEEEEEEEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred ccccCceEecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 99999999999983 3444544 4568999999998622 2344555544 0
Q ss_pred cCCC----------------------------------------------------------CCCceEEEEecccCCCCC
Q 045751 354 EYQF----------------------------------------------------------PPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 354 ~~~l----------------------------------------------------------p~~L~~L~L~~~~l~~~~ 375 (492)
+..+ .++|++|++++|.+. ..
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 0111 034555666666553 33
Q ss_pred cccc-cCCCccCeEEEeccccCCCcc--cccCCCCccccEEeecccCCcceEE---EccCccccccEEEEeecCCcCccc
Q 045751 376 MPTL-EKLPLLQVLKLKKNSYLGRKL--TCGSHGFPKLKVLHLKSMLWLEEWT---MGTGAMPKLECLIIDPCAYLKRLP 449 (492)
Q Consensus 376 ~~~l-~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp 449 (492)
|..+ .++++|+.|++++|.+.+..+ ...++.+++|+.|++++| .++.++ ..+..+++|+.|++++|... .+|
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 3333 468889999999888775432 223577889999999988 666554 23778899999999988644 788
Q ss_pred hhccCCCCCcEEEecCCC
Q 045751 450 KQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 450 ~~l~~l~~L~~L~l~~c~ 467 (492)
..+..+++|++|++++|.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SCCCCCTTCCEEECTTSC
T ss_pred hhhcccccccEEECCCCC
Confidence 888888889999988876
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=241.97 Aligned_cols=137 Identities=17% Similarity=0.097 Sum_probs=117.7
Q ss_pred CCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCch
Q 045751 151 SELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPS 229 (492)
Q Consensus 151 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~ 229 (492)
...++ ..+.+++++|++++|.+. ...+..|.++++|++|++++|.++.++ ..|+.+++|++|++++|.+..+++
T Consensus 19 l~~ip-~~l~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 19 FYKIP-DNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCC-SSSCSSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccC-CCccccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 34444 233678999999999886 355568899999999999999999664 678999999999999999998876
Q ss_pred hHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCC-CCCccccCCcccceeecCC
Q 045751 230 SFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPA-YPRNDCGSLENLNFISALH 292 (492)
Q Consensus 230 ~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~l~~~~ 292 (492)
..|+++++|++|++++|.+..+|. .++++++|++|++++|.+.+ .+|..++++++|+.+++++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 555999999999999999988875 48999999999999999876 5799999999999999874
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.8e-27 Score=238.81 Aligned_cols=297 Identities=19% Similarity=0.127 Sum_probs=246.4
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~ 213 (492)
.+..++.|.+..+.+..+....+ +++|++|++++|.+. ...+..|.++++|++|+|++|.++.+|. .+..+++
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 45689999999888888877777 999999999999876 3556789999999999999999998875 5789999
Q ss_pred cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751 214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH 292 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~ 292 (492)
|++|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+++.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 999999999999776555599999999999999887764 4689999999999999998766666788899999999974
Q ss_pred --CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecc
Q 045751 293 --PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNT 369 (492)
Q Consensus 293 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~ 369 (492)
........+..+++|+.|++++| .....++.......+|+.|++++ .+++.+.. .+..+ ++|++|++++|
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n 258 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHW--PYLDTMTPNCLYGLNLTSLSITH----CNLTAVPYLAVRHL-VYLRFLNLSYN 258 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECC--TTCCEECTTTTTTCCCSEEEEES----SCCCSCCHHHHTTC-TTCCEEECCSS
T ss_pred CcCcEeChhhcccCcccceeeCCCC--ccccccCcccccCccccEEECcC----CcccccCHHHhcCc-cccCeeECCCC
Confidence 23333434889999999999998 45666666666667999999984 34444332 46778 89999999999
Q ss_pred cCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcC
Q 045751 370 ELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLK 446 (492)
Q Consensus 370 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~ 446 (492)
.+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.++. .+..+++|+.|++++|+...
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCccC
Confidence 998777778899999999999999887643 556788999999999998 7777765 46889999999999998654
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.3e-26 Score=239.72 Aligned_cols=315 Identities=16% Similarity=0.102 Sum_probs=217.4
Q ss_pred eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEc
Q 045751 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKL 219 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l 219 (492)
.+++.+..+....++ ..+.+++++|++++|.+. ...+..|.++++|++|++++|.++.+ |..|+.+++|++|++
T Consensus 33 ~~~l~ls~~~L~~ip-~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTHVP-KDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCSCC-TTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCccCC-CCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 478888867777665 334699999999999986 35567899999999999999999965 678999999999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchH--HHhhcccccccccccccccCCCCCccccCCcccceeecCCC----
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP---- 293 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~---- 293 (492)
++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.+.....+.++ +|+.+++++.
T Consensus 108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHI 183 (562)
T ss_dssp TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCC
T ss_pred CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccc
Confidence 99999999975 7999999999999988764 689999999999999998876333333333 3388877631
Q ss_pred -Cccchh-------------------------hhCCCcccceEEeeeccC--cchhhHHHHhhcC---------------
Q 045751 294 -RCCTPD-------------------------ILGRLPNLRKLRIHGDLS--NNQSLLSKSLYKL--------------- 330 (492)
Q Consensus 294 -~~~~~~-------------------------~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l--------------- 330 (492)
...+.. .+..+++|+.|++++|.. .........+..+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 111111 133566788888887620 0111112223333
Q ss_pred ------------CCCCeEEeecC----C---CC-----CC-----------------------------ccEEEe-----
Q 045751 331 ------------SSLESLKLVNE----S---KM-----PR-----------------------------LSKIVL----- 352 (492)
Q Consensus 331 ------------~~L~~L~l~~~----~---~~-----~~-----------------------------L~~L~l----- 352 (492)
++|++|+++++ . .. .+ ++.|++
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 35666666541 1 11 23 333333
Q ss_pred ---ec-CCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCc-ccccCCCCccccEEeecccCCcce-EEE
Q 045751 353 ---DE-YQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRK-LTCGSHGFPKLKVLHLKSMLWLEE-WTM 426 (492)
Q Consensus 353 ---~~-~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~-l~~ 426 (492)
.+ ..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. .+..+..+++|+.|++++| .++. +|.
T Consensus 344 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 421 (562)
T 3a79_B 344 IHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD 421 (562)
T ss_dssp CCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS
T ss_pred ccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh
Confidence 01 566 88999999999988877888889999999999988877532 2445678888888888887 4443 543
Q ss_pred c-cCccc----------------------cccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 427 G-TGAMP----------------------KLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 427 ~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
. +..++ +|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 2 33444 55555555553 23555555566667777766664
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.6e-26 Score=224.49 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=238.7
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.++++.|++.++... ..+...+.++++|++|++++|.++.++ ..++.+++|++|++++|.+..+++..|+++++|
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 799999999999876 466677899999999999999999665 588999999999999999998877755999999
Q ss_pred cEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751 239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS 317 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (492)
++|++++|.+..+|.. +.++++|++|++++|.+.+..|..+..+++|+.|++++..-.... ++.+++|+.|++++|.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~- 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL- 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc-
Confidence 9999999999999877 589999999999999998777888889999999999853222223 6778999999999883
Q ss_pred cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCC
Q 045751 318 NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLG 397 (492)
Q Consensus 318 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 397 (492)
.. .+...++|+.|++++ ..+..+. ...+ ++|++|++++|.+.+. ..++.+++|+.|++++|.+.+
T Consensus 198 -l~-----~~~~~~~L~~L~l~~----n~l~~~~--~~~~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 198 -LS-----TLAIPIAVEELDASH----NSINVVR--GPVN-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp -CS-----EEECCSSCSEEECCS----SCCCEEE--CCCC-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred -cc-----ccCCCCcceEEECCC----Ceeeecc--cccc-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 21 123456889999874 4455442 2334 8999999999998654 578999999999999998876
Q ss_pred CcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 398 RKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 398 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.. +..+..+++|+.|++++| .++.++.....+++|+.|++++|.. ..+|..+..+++|++|++++|+
T Consensus 263 ~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 263 IM-YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EE-SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred cC-hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc
Confidence 43 556788999999999998 7888988888999999999999974 4788888899999999999987
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=223.26 Aligned_cols=233 Identities=22% Similarity=0.221 Sum_probs=195.9
Q ss_pred cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF 266 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L 266 (492)
..+++++|++++|.++.+|..++.+++|++|++++|.+..+|..+ +++++|++|++++|.+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 458899999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751 267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR 346 (492)
Q Consensus 267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 346 (492)
++|...+.+|..++... .... ++.+++|+.|++++|. .. .+|..+
T Consensus 158 ~~n~~~~~~p~~~~~~~------------~~~~-~~~l~~L~~L~L~~n~--l~-~lp~~l------------------- 202 (328)
T 4fcg_A 158 RACPELTELPEPLASTD------------ASGE-HQGLVNLQSLRLEWTG--IR-SLPASI------------------- 202 (328)
T ss_dssp EEETTCCCCCSCSEEEC-------------CCC-EEESTTCCEEEEEEEC--CC-CCCGGG-------------------
T ss_pred CCCCCccccChhHhhcc------------chhh-hccCCCCCEEECcCCC--cC-cchHhh-------------------
Confidence 99988888887654311 1112 6678889999999882 22 344333
Q ss_pred ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM 426 (492)
Q Consensus 347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 426 (492)
+.+ ++|++|++++|.+.+ .+..++++++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|.
T Consensus 203 --------~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 203 --------ANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp --------GGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred --------cCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence 344 777888888888754 5557889999999999988887654 66678899999999999988888888
Q ss_pred ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCC
Q 045751 427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRP 466 (492)
Q Consensus 427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 466 (492)
.++.+++|+.|++++|+.++.+|..+.++++|+.+++...
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8999999999999999999999999999999999988754
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.1e-25 Score=238.05 Aligned_cols=323 Identities=16% Similarity=0.101 Sum_probs=229.4
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~ 213 (492)
.+..+++|.+..+.+..+++..| +++|++|++++|.+. .+.+.+|.++++|++|+|++|.++.+| ..|.++++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 56789999999888988887787 999999999999876 356678999999999999999999877 56899999
Q ss_pred cCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc--hHHHhhcccccccccccccccCCCCCccccCC---------
Q 045751 214 LRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH--TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSL--------- 282 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l--------- 282 (492)
|++|++++|.++.+|+..|+++++|++|++++|.+.. +|..++.+++|++|++++|.+.+..|..+..+
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 9999999999999988766999999999999997764 56778999999999999987755322221110
Q ss_pred -------------------------------------------cc-----------------------------------
Q 045751 283 -------------------------------------------EN----------------------------------- 284 (492)
Q Consensus 283 -------------------------------------------~~----------------------------------- 284 (492)
..
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 00
Q ss_pred --------------------------------------------cceeecCCC----------------------Cccch
Q 045751 285 --------------------------------------------LNFISALHP----------------------RCCTP 298 (492)
Q Consensus 285 --------------------------------------------L~~l~~~~~----------------------~~~~~ 298 (492)
++.+++.+. .....
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 000100000 00000
Q ss_pred hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC---------CCCCccEEE------------------
Q 045751 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES---------KMPRLSKIV------------------ 351 (492)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~------------------ 351 (492)
. ...+++|+.|+++.|........+.....+.+|+.+++.... .+++|+.+.
T Consensus 366 ~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 S-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp C-CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred c-cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 0 123445556666555322222333444455556665554311 233333333
Q ss_pred -------e-----------ecCCCCCCceEEEEecccCC-CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccE
Q 045751 352 -------L-----------DEYQFPPSLTHLSFSNTELM-EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKV 412 (492)
Q Consensus 352 -------l-----------~~~~lp~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 412 (492)
+ .+..+ +.|+.|++++|.+. ...+..+..+++|+.|++++|.+++.. +..+.++++|+.
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~-~~~f~~l~~L~~ 522 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQV 522 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC-hHHHcCCCCCCE
Confidence 3 23345 67888888877632 335567788999999999999887543 556788999999
Q ss_pred EeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCC-CCCcEEEecCCC
Q 045751 413 LHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSV-KRFKKLELWRPQ 467 (492)
Q Consensus 413 L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 467 (492)
|+|++| .++.++. .+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999998 6776654 57889999999999998877777788887 689999998754
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=244.13 Aligned_cols=188 Identities=19% Similarity=0.147 Sum_probs=146.5
Q ss_pred EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcC-CCC-chhhccccccCEEEccC
Q 045751 144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVL-SQL-PSGIENLFFLRYLKLNI 221 (492)
Q Consensus 144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l-~~l-~~~~~~l~~L~~L~l~~ 221 (492)
+.........++. ..+++++|++++|.+. ...+..|.++++|++|+|++|.. ..+ |..|+++++|++|++++
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 3344345556653 6789999999999886 35567889999999999999964 455 68899999999999999
Q ss_pred CCCccC-chhHHhcCCCccEEecCCCcccc-hHHH--hhcccccccccccccccCCCCC-ccccCCcccceeecCCC--C
Q 045751 222 PSLKSL-PSSFLSSISNLYTLDMPFSYIHH-TADV--FWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLNFISALHP--R 294 (492)
Q Consensus 222 ~~i~~l-p~~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~l~~~~~--~ 294 (492)
|.+..+ |..+ +++++|++|++++|.+.. +|.. ++++++|++|++++|.+.+..| ..++++++|+.|++++. .
T Consensus 83 N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999966 5555 999999999999998865 4554 8899999999999999877655 57899999999999852 2
Q ss_pred ccchhhhCCC--cccceEEeeeccCcchhhHHHHhhcCCC------CCeEEeec
Q 045751 295 CCTPDILGRL--PNLRKLRIHGDLSNNQSLLSKSLYKLSS------LESLKLVN 340 (492)
Q Consensus 295 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~------L~~L~l~~ 340 (492)
...+..++.+ ++|+.|+++.| ......+..++.+++ |+.|++++
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred eeCHHHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCC
Confidence 2222226555 78999999998 444445544555444 99999986
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.2e-25 Score=223.38 Aligned_cols=293 Identities=20% Similarity=0.126 Sum_probs=213.7
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY 216 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 216 (492)
..+++++.+..+.+...+ ... +++|++|++++|.+.. . .+..+++|++|++++|.++.++ ++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 467888888877666654 222 8889999998888762 2 2788888999999988888765 788888999
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-Cc
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RC 295 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~ 295 (492)
|++++|.++.+| + +.+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .++.+++|+.+++++. ..
T Consensus 111 L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999888888876 5 88888999999888887774 788888889988888655555 4667888888888742 11
Q ss_pred cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCC
Q 045751 296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
.+ . ++.+++|+.|++++|. ... + .++.+++|+.|++++ .+++.+ .+..+ ++|++|++++|.+.+..
T Consensus 184 ~l-~-l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~----N~l~~i--p~~~l-~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 184 EL-D-VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSS----NKLTEI--DVTPL-TQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC-C-CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCS----SCCSCC--CCTTC-TTCSEEECCSSCCSCCC
T ss_pred ee-c-cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcC----Cccccc--Ccccc-CCCCEEEeeCCcCCCcC
Confidence 22 2 6778888888888883 222 2 377788888888874 344443 36677 89999999999987654
Q ss_pred cccccCCC-------ccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc--------cCccccccEEEEe
Q 045751 376 MPTLEKLP-------LLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG--------TGAMPKLECLIID 440 (492)
Q Consensus 376 ~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--------~~~l~~L~~L~l~ 440 (492)
+..+.++. +|+.|++++|...+.. ..+.+++|+.|++++|..+..+|.. +..+++|+.|+++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~---~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF---QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE---ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCcc---cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 43333332 3444444444443322 2467899999999999877776642 4567888999998
Q ss_pred ecCCcCccchhccCCCCCcEEEecCCC
Q 045751 441 PCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 441 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+|.... ++ +.++++|+.|+++++.
T Consensus 327 ~N~l~~-l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 327 NTELTE-LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred CCcccc-cc--cccCCcCcEEECCCCC
Confidence 887554 53 8889999999998876
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-25 Score=232.18 Aligned_cols=271 Identities=15% Similarity=0.144 Sum_probs=226.3
Q ss_pred cCCcEEEEEecCCcCCCCchh-hccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHL 264 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L 264 (492)
.++++++|+++++.++.+|.. +..+++|++|++++|.+..+++..|+.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988855 68899999999999999988775559999999999999999888654 7999999999
Q ss_pred cccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC
Q 045751 265 NFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES 342 (492)
Q Consensus 265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 342 (492)
++++|.+.+..+..++.+++|+.|++++ ....++..++.+++|+.|++++|. ... + .+..+++|+.|+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccCc
Confidence 9999998754444468899999999985 334445448999999999999983 222 2 36678999999998743
Q ss_pred -----CCCCccEEEe-------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751 343 -----KMPRLSKIVL-------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL 410 (492)
Q Consensus 343 -----~~~~L~~L~l-------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 410 (492)
.+++|+.|++ ..+..|++|+.|++++|.+.+ +..++.+++|+.|++++|.+.+.. +..++.+++|
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 280 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRL 280 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSC
T ss_pred cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHHhcCccCC
Confidence 5667888887 112233789999999999865 467899999999999999987653 5667899999
Q ss_pred cEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 411 KVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 411 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+.|++++| .++.+|.....+++|+.|++++|... .+|..+..+++|+.|++++|.
T Consensus 281 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 281 ERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 99999998 78889988889999999999999865 788888999999999999987
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.2e-26 Score=218.89 Aligned_cols=248 Identities=17% Similarity=0.182 Sum_probs=154.5
Q ss_pred CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecC-CcCC-CCchhhccccccCEEEccCCCCc-cCchhHHhcCCC
Q 045751 161 LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGS-LVLS-QLPSGIENLFFLRYLKLNIPSLK-SLPSSFLSSISN 237 (492)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~ 237 (492)
.+++.|+++++.+.. ....+..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..+ .++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 567777777776641 002345667777777777774 6655 66777777777777777777777 666666 77777
Q ss_pred ccEEecCCCccc-chHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCc-ccceEEeeec
Q 045751 238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLP-NLRKLRIHGD 315 (492)
Q Consensus 238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 315 (492)
|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|.. +..++ +|+.|++++|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----------------------l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----------------------YGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG----------------------GGCCCTTCCEEECCSS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH----------------------HhhhhhcCcEEECcCC
Confidence 777777777665 56666777777777777777765555544 44444 5666666665
Q ss_pred cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEecccc
Q 045751 316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSY 395 (492)
Q Consensus 316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 395 (492)
...+..|..+..+ . |++|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus 185 --~l~~~~~~~~~~l----------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 185 --RLTGKIPPTFANL----------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp --EEEEECCGGGGGC----------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred --eeeccCChHHhCC----------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 2333333333332 2 55555555555555556666666666666666666
Q ss_pred CCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 396 LGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 396 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+.. ..+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|.. ..+++|+.+++.+++
T Consensus 234 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCBG--GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eeec--CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5432 12455666777777666322255556666677777777766665556654 566666666666665
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=4.7e-25 Score=214.02 Aligned_cols=284 Identities=18% Similarity=0.137 Sum_probs=169.4
Q ss_pred CeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEE
Q 045751 140 MIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLK 218 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~ 218 (492)
+.+.+.+.......++ ..+.+.++.|++++|.+. ......|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccC-ccCCCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3455555433333333 223566777777777665 23344566777777777777776644 56667777777777
Q ss_pred ccCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCC--CCCccccCCcccceeecCCCCc
Q 045751 219 LNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPA--YPRNDCGSLENLNFISALHPRC 295 (492)
Q Consensus 219 l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~l~~~~~~~ 295 (492)
+++|.+..+|..+ . ++|++|++++|.+..++. .+.++++|+.|++++|.+.. ..+..
T Consensus 107 Ls~n~l~~l~~~~-~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------- 166 (330)
T 1xku_A 107 LSKNQLKELPEKM-P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----------------- 166 (330)
T ss_dssp CCSSCCSBCCSSC-C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----------------
T ss_pred CCCCcCCccChhh-c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-----------------
Confidence 7777777776655 2 567777777776655543 36667777777777666532 22333
Q ss_pred cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCC
Q 045751 296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMED 374 (492)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~ 374 (492)
+..+++|+.|++++|. ...+|..+. ++|+.|++++ ..++.+.. .+..+ ++|++|++++|.+.+.
T Consensus 167 -----~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 167 -----FQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDG----NKITKVDAASLKGL-NNLAKLGLSFNSISAV 231 (330)
T ss_dssp -----GGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTT----SCCCEECTGGGTTC-TTCCEEECCSSCCCEE
T ss_pred -----ccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCcee
Confidence 4455555555555552 112222221 4555555552 22333221 45566 7777777777777665
Q ss_pred CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cC------ccccccEEEEeecCCcC-
Q 045751 375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TG------AMPKLECLIIDPCAYLK- 446 (492)
Q Consensus 375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~- 446 (492)
.+..+..+++|+.|++++|.+.. ++..+..+++|++|++++| .++.++.. +. ..+.|+.|++.+|+...
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred ChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc
Confidence 55667777788888887777662 3445667777888888777 55555432 21 24677888888887643
Q ss_pred -ccchhccCCCCCcEEEecCC
Q 045751 447 -RLPKQLWSVKRFKKLELWRP 466 (492)
Q Consensus 447 -~lp~~l~~l~~L~~L~l~~c 466 (492)
..|..+..+++|+.++++++
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC---
T ss_pred ccCccccccccceeEEEeccc
Confidence 34567777888888888775
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.5e-25 Score=215.10 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=156.3
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.+++++|++++|.+. ...+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..+ . ++|
T Consensus 53 ~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-P--SSL 125 (332)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-C--TTC
T ss_pred CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-c--ccC
Confidence 445555555555543 12333455555555555555555533 444555555555555555555555544 2 455
Q ss_pred cEEecCCCcccchHHH-hhcccccccccccccccCC--CCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPA--YPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
++|++++|.+..+|.. +..+++|++|++++|.+.. ..|.. +..+ +|+.|++++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA----------------------FDGL-KLNYLRISEA 182 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS----------------------SCSC-CCSCCBCCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc----------------------ccCC-ccCEEECcCC
Confidence 5555555555544432 4555555555555554421 22222 4444 5666666665
Q ss_pred cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751 316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394 (492)
Q Consensus 316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 394 (492)
. ...+|..+. ++|+.|+++++ .++.+.. .+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 183 ~---l~~l~~~~~--~~L~~L~l~~n----~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 183 K---LTGIPKDLP--ETLNELHLDHN----KIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp B---CSSCCSSSC--SSCSCCBCCSS----CCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred C---CCccCcccc--CCCCEEECCCC----cCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 2 222332222 45666666531 2222211 45566 788888898888877777778889999999999888
Q ss_pred cCCCcccccCCCCccccEEeecccCCcceEEEc-cC------ccccccEEEEeecCCc--CccchhccCCCCCcEEEecC
Q 045751 395 YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TG------AMPKLECLIIDPCAYL--KRLPKQLWSVKRFKKLELWR 465 (492)
Q Consensus 395 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~ 465 (492)
+. .++..+..+++|+.|++++| .++.++.. +. ..++|+.|++.+|+.. ...|..+..+++|+.+++++
T Consensus 253 l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 253 LS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred Ce--ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 76 34555778889999999987 56665432 22 2577899999999866 34566788899999999988
Q ss_pred CC
Q 045751 466 PQ 467 (492)
Q Consensus 466 c~ 467 (492)
+.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 75
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.1e-24 Score=208.22 Aligned_cols=264 Identities=16% Similarity=0.174 Sum_probs=168.4
Q ss_pred EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 269 (492)
+++++++++.++.+|..+. ++|++|++++|.++.++...|+++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 3444444444444443322 3444444444444444432224444444444444444333 333444444444444444
Q ss_pred ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
.+. .+|..+. ++|+.+++++ .....+..+..+++|+.|++++|........+..+..+++|+.|++++ ..+
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~----n~l 183 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNI 183 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS----SCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC----Ccc
Confidence 432 2333322 3444444442 222333347889999999999984222335567788999999999985 233
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG 427 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 427 (492)
..+. .... ++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+|..
T Consensus 184 ~~l~--~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~ 258 (330)
T 1xku_A 184 TTIP--QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVKVPGG 258 (330)
T ss_dssp CSCC--SSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred ccCC--cccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCC-cCccCChh
Confidence 3221 1223 79999999999998877888999999999999999887543 335678999999999998 78889988
Q ss_pred cCccccccEEEEeecCCcCccchhcc------CCCCCcEEEecCCCH
Q 045751 428 TGAMPKLECLIIDPCAYLKRLPKQLW------SVKRFKKLELWRPQP 468 (492)
Q Consensus 428 ~~~l~~L~~L~l~~c~~l~~lp~~l~------~l~~L~~L~l~~c~~ 468 (492)
+..+++|+.|++++|+....-+..+. ..++|+.|+++++|-
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 99999999999999986543333332 347899999999983
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.6e-24 Score=216.57 Aligned_cols=270 Identities=19% Similarity=0.098 Sum_probs=219.1
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|++|+++++.+.. . + .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| + +++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence 8999999999998862 2 2 6889999999999999999886 889999999999999999886 5 8999999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCcc-chhhhCCCcccceEEeeeccCc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCC-TPDILGRLPNLRKLRIHGDLSN 318 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 318 (492)
+|++++|.+..+| ++.+++|++|++++|.+.+ ++ ++.+++|+.+++++.... ... ++.+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC--
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc--
Confidence 9999999998886 8999999999999999876 33 778999999999853111 114 7889999999999983
Q ss_pred chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751 319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398 (492)
Q Consensus 319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 398 (492)
...++ +..+++|+.|++++ .+++.+ .++.+ ++|++|++++|.+.+ .+ ++.+++|+.|++++|.+.+.
T Consensus 182 -l~~l~--l~~l~~L~~L~l~~----N~l~~~--~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 -ITELD--VSQNKLLNRLNCDT----NNITKL--DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CCCCC--CTTCTTCCEEECCS----SCCSCC--CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred -cceec--cccCCCCCEEECcC----CcCCee--ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 22344 78899999999984 344444 47788 999999999999976 33 88999999999999998875
Q ss_pred cccccCCCCccc----------cEEeecccCCcceEEEccCccccccEEEEeecCCcCccchh--------ccCCCCCcE
Q 045751 399 KLTCGSHGFPKL----------KVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQ--------LWSVKRFKK 460 (492)
Q Consensus 399 ~~~~~~~~~~~L----------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~ 460 (492)
. .+.+++| +.|++++|..+..+| .+.+++|+.|++++|+.++.+|.. +.++++|++
T Consensus 249 ~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 249 D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred C----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 3 3445544 556666666566666 578899999999999988777642 455677888
Q ss_pred EEecCCC
Q 045751 461 LELWRPQ 467 (492)
Q Consensus 461 L~l~~c~ 467 (492)
|+++++.
T Consensus 323 L~L~~N~ 329 (457)
T 3bz5_A 323 LYLNNTE 329 (457)
T ss_dssp EECTTCC
T ss_pred EECCCCc
Confidence 8877765
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.6e-25 Score=215.46 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=119.4
Q ss_pred CCeeEEEEecCCCCc--cccccc--CCCeeEEEeec-CCCCCCCchhHHHHhccCCcEEEEEecCCcCC-CCchhhcccc
Q 045751 139 KMIKRLTANVNLSEL--DSLEDF--NLYLHSLLCLS-SESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-QLPSGIENLF 212 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~--~~~~~~--~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~ 212 (492)
.+++++.+..+.+.. ..+..+ +++|++|++++ +... ...+..+.++++|++|++++|.++ .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 689999999777765 444555 99999999995 6654 245667899999999999999998 8899999999
Q ss_pred ccCEEEccCCCCc-cCchhHHhcCCCccEEecCCCccc-chHHHhhccc-ccccccccccccCCCCCccccCC
Q 045751 213 FLRYLKLNIPSLK-SLPSSFLSSISNLYTLDMPFSYIH-HTADVFWEMN-KLRHLNFGLFTLPAYPRNDCGSL 282 (492)
Q Consensus 213 ~L~~L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l 282 (492)
+|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..++.++ +|++|++++|.+.+.+|..+..+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 9999999999999 788888 99999999999999887 8898999998 99999999999876666655443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.3e-24 Score=207.45 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=166.5
Q ss_pred EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 269 (492)
+++++++++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4444444444444443332 3444444444444444332224444444444444444433 333444444444444444
Q ss_pred ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
.+. .+|..+. ++|+.+++++ ....++..++.+++|+.|++++|........+..+..+ +|+.|++++ ..+
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~----n~l 184 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE----AKL 184 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS----SBC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC----CCC
Confidence 442 3333332 3444444442 12233333788889999999988422223455666666 899999984 223
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG 427 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 427 (492)
..++ . .++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+|..
T Consensus 185 ~~l~--~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 185 TGIP--K-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp SSCC--S-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred CccC--c-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC-cCeecChh
Confidence 3221 1 12278999999999998888888999999999999999987643 445678999999999998 78899988
Q ss_pred cCccccccEEEEeecCCcCccchhccC------CCCCcEEEecCCC
Q 045751 428 TGAMPKLECLIIDPCAYLKRLPKQLWS------VKRFKKLELWRPQ 467 (492)
Q Consensus 428 ~~~l~~L~~L~l~~c~~l~~lp~~l~~------l~~L~~L~l~~c~ 467 (492)
+..+++|+.|++++|.....-+..+.. .++|+.|++.++|
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 999999999999999865433333433 4789999999998
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2e-23 Score=210.88 Aligned_cols=288 Identities=21% Similarity=0.201 Sum_probs=176.9
Q ss_pred CCCeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccC-CcEEEEEecCCcCCCCchhhccccccCE
Q 045751 138 RKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMF-KFLRVLDLGSLVLSQLPSGIENLFFLRY 216 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 216 (492)
+.+++++.+.++....++ ...++|++|++++|.... +... ++|++|++++|.++.+| .++.+++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~---------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC---------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred cCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc---------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 456777777766555543 125677777777776651 1111 57777777777777776 4777777777
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCc
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRC 295 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~ 295 (492)
|++++|.++.+|... .+|++|++++|.+..+| .++++++|++|++++|.+.+ +|... .+|+.+++++ ...
T Consensus 158 L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred EECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence 777777777776432 47777777777777776 47777777777777777653 44332 4666676663 222
Q ss_pred cchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC------CCCCccEEEe------ecCCCCCCceE
Q 045751 296 CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES------KMPRLSKIVL------DEYQFPPSLTH 363 (492)
Q Consensus 296 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~ 363 (492)
.++. ++.+++|+.|++++|. . ..+|. ..++|+.|+++++. .+++|+.|++ .+..+|++|++
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~--l-~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNL--L-KTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSC--C-SSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred cccc-cCCCCCCCEEECCCCc--C-Ccccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCE
Confidence 3344 6677777777777762 2 22222 23567777776522 3345666655 23344467777
Q ss_pred EEEecccCCCCCcccccCC-CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeec
Q 045751 364 LSFSNTELMEDPMPTLEKL-PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC 442 (492)
Q Consensus 364 L~L~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 442 (492)
|++++|.+.+ +..+ ++|+.|++++|.+++. + ..+++|+.|++++| .++.+|. .+++|+.|++++|
T Consensus 302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l--p---~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL--P---ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCc-----ccCCcCcCCEEECCCCccccc--c---ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 7777777643 2233 4788888888777652 2 23578888888887 6666665 4678888888888
Q ss_pred CCcC--ccchhccCC-------------CCCcEEEecCCC
Q 045751 443 AYLK--RLPKQLWSV-------------KRFKKLELWRPQ 467 (492)
Q Consensus 443 ~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 467 (492)
.... .+|..+.++ ++|+.|++++++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 7766 677777666 778888888775
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.3e-24 Score=208.65 Aligned_cols=222 Identities=19% Similarity=0.223 Sum_probs=174.7
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
.++++.|+++++.+. ..+..+.++++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+ +++++|+
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCC
T ss_pred ccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCC
Confidence 577888888888775 3345567799999999999999999999999999999999999999999988 9999999
Q ss_pred EEecCCC-cccchHHHhhc---------ccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccce
Q 045751 240 TLDMPFS-YIHHTADVFWE---------MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRK 309 (492)
Q Consensus 240 ~L~L~~~-~l~~lp~~~~~---------l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~ 309 (492)
+|++++| .+..+|..+.. +++|++|++++|.+. .+|. . ++.+++|++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~---------------------~-l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA---------------------S-IANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG---------------------G-GGGCTTCCE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH---------------------h-hcCCCCCCE
Confidence 9999997 55777766654 888888888888764 3333 2 677788888
Q ss_pred EEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEE
Q 045751 310 LRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLK 389 (492)
Q Consensus 310 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 389 (492)
|++++|. . ..+|..+. .+ ++|++|++++|.+.+..+..++++++|+.|+
T Consensus 211 L~L~~N~--l-~~l~~~l~---------------------------~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 211 LKIRNSP--L-SALGPAIH---------------------------HL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EEEESSC--C-CCCCGGGG---------------------------GC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred EEccCCC--C-CcCchhhc---------------------------cC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 8888872 2 22333333 34 6677777777777777777888888888888
Q ss_pred EeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeec
Q 045751 390 LKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPC 442 (492)
Q Consensus 390 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 442 (492)
+++|.+.+.. +..+..+++|+.|++++|..++.+|..++.+++|+.+.+..+
T Consensus 260 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 260 LKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 8888776644 555778888999999988888888888888999888887754
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=6.4e-23 Score=216.69 Aligned_cols=302 Identities=18% Similarity=0.160 Sum_probs=212.0
Q ss_pred CCCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhcccc
Q 045751 136 DSRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLF 212 (492)
Q Consensus 136 ~~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~ 212 (492)
....++++|.+..+.+..+++.++ +++|++|++++|.+. ..++..|.++++|++|++++|.++.+|. .|++++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 356789999999888888887777 899999999999886 3666789999999999999999998774 589999
Q ss_pred ccCEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchH-HHhhcccccc---------------------------
Q 045751 213 FLRYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLR--------------------------- 262 (492)
Q Consensus 213 ~L~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~--------------------------- 262 (492)
+|++|++++|.+. .+|..+ +.+++|++|++++|.+..++ ..+..+.+++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchhh-ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 9999999999998 456666 89999999999999775543 2232222211
Q ss_pred --------------------------------------------------------------------------------
Q 045751 263 -------------------------------------------------------------------------------- 262 (492)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (492)
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence
Q ss_pred ------------------------cccccccccCCCC-------------------CccccCCcccceeecCCCC-----
Q 045751 263 ------------------------HLNFGLFTLPAYP-------------------RNDCGSLENLNFISALHPR----- 294 (492)
Q Consensus 263 ------------------------~L~L~~~~~~~~~-------------------p~~~~~l~~L~~l~~~~~~----- 294 (492)
.|++.+|.+.... +.....+++|+.++++...
T Consensus 308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 1111111110000 0011125667777665311
Q ss_pred ccchhhhCCCcccceEEeeeccC---------------------cchhh-HHHHhhcCCCCCeEEeecCC----------
Q 045751 295 CCTPDILGRLPNLRKLRIHGDLS---------------------NNQSL-LSKSLYKLSSLESLKLVNES---------- 342 (492)
Q Consensus 295 ~~~~~~l~~l~~L~~L~l~~~~~---------------------~~~~~-~~~~l~~l~~L~~L~l~~~~---------- 342 (492)
..... ...+.+|+.+++..+.. ..... .+..+..+++++.++++.+.
T Consensus 388 ~~~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 388 CCSQS-DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp ECCHH-HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccc-hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 11112 33444444444443310 11111 11334566677777766522
Q ss_pred CCCCccEEEe------------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc
Q 045751 343 KMPRLSKIVL------------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL 410 (492)
Q Consensus 343 ~~~~L~~L~l------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 410 (492)
.++.++.|++ .+..+ ++|++|+|++|.+.+..+..++++++|+.|+|++|.+++.. +..+..+++|
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L 544 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSL 544 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTC
T ss_pred cchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCC
Confidence 5667888877 45677 89999999999998888889999999999999999987654 5557889999
Q ss_pred cEEeecccCCcceE-EEccCcc-ccccEEEEeecCCcC
Q 045751 411 KVLHLKSMLWLEEW-TMGTGAM-PKLECLIIDPCAYLK 446 (492)
Q Consensus 411 ~~L~l~~~~~l~~l-~~~~~~l-~~L~~L~l~~c~~l~ 446 (492)
+.|++++| .++.+ |..+..+ ++|+.|++++|+...
T Consensus 545 ~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 545 QVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999998 56655 4557777 689999999998765
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=2.3e-25 Score=226.39 Aligned_cols=326 Identities=16% Similarity=0.090 Sum_probs=192.9
Q ss_pred CCeeEEEEecCCCCcccccc-c--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhh-cccc-
Q 045751 139 KMIKRLTANVNLSELDSLED-F--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGI-ENLF- 212 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~-~~l~- 212 (492)
.+++++.+.++.+....... + +++|++|++++|.+........+..+..+++|++|++++|.++. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35677777755555544443 3 77788888877776411111345566777778888887777652 22222 2344
Q ss_pred ---ccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcccch-HHHhh-----cccccccccccccccCCCC---
Q 045751 213 ---FLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYIHHT-ADVFW-----EMNKLRHLNFGLFTLPAYP--- 275 (492)
Q Consensus 213 ---~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~-----~l~~L~~L~L~~~~~~~~~--- 275 (492)
+|++|++++|.+. .++..+ ..+++|++|++++|.+... +..+. ..++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 5777888777776 345555 7777788888777765432 12222 2446777777777665532
Q ss_pred -CccccCCcccceeecCCCCc---cchh---hh-CCCcccceEEeeeccC--cchhhHHHHhhcCCCCCeEEeecCC---
Q 045751 276 -RNDCGSLENLNFISALHPRC---CTPD---IL-GRLPNLRKLRIHGDLS--NNQSLLSKSLYKLSSLESLKLVNES--- 342 (492)
Q Consensus 276 -p~~~~~l~~L~~l~~~~~~~---~~~~---~l-~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~--- 342 (492)
+..+..+++|+.+++++..- .+.. .+ ...++|++|++++|.- .....++..+..+++|+.|+++++.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 44444567777777764211 0111 01 1245777777777631 1112356666677777777777522
Q ss_pred ------------CCCCccEEEe---------------ecCCCCCCceEEEEecccCCCCCccccc-----CCCccCeEEE
Q 045751 343 ------------KMPRLSKIVL---------------DEYQFPPSLTHLSFSNTELMEDPMPTLE-----KLPLLQVLKL 390 (492)
Q Consensus 343 ------------~~~~L~~L~l---------------~~~~lp~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~l 390 (492)
.+++|+.|++ .+..+ ++|++|++++|.+.+..+..+. ..++|+.|++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 2556666666 22236 6777888877776443333332 2357777777
Q ss_pred eccccCCCc---ccccCCCCccccEEeecccCCcceE-EEccC-----ccccccEEEEeecCCcC----ccchhccCCCC
Q 045751 391 KKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEW-TMGTG-----AMPKLECLIIDPCAYLK----RLPKQLWSVKR 457 (492)
Q Consensus 391 ~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~-----~l~~L~~L~l~~c~~l~----~lp~~l~~l~~ 457 (492)
++|.+++.. ++..+..+++|+.|++++| .++.. +..+. ..++|+.|++++|.... .+|..+..+++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 777766542 2223345677888888877 44422 11111 25678888888886553 56777777788
Q ss_pred CcEEEecCCC
Q 045751 458 FKKLELWRPQ 467 (492)
Q Consensus 458 L~~L~l~~c~ 467 (492)
|++|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 8888888776
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=8.9e-23 Score=199.89 Aligned_cols=253 Identities=18% Similarity=0.162 Sum_probs=133.3
Q ss_pred cCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCC
Q 045751 159 FNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISN 237 (492)
Q Consensus 159 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~ 237 (492)
+.++|++|++++|.+. ......+.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|...|+++++
T Consensus 50 ~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 50 LTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 3567777777777665 23444667777777777777777744 355777777777777777777777664477777
Q ss_pred ccEEecCCCcccchHH--Hhhcccccccccccccc-cCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEe
Q 045751 238 LYTLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFT-LPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRI 312 (492)
Q Consensus 238 L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~-~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l 312 (492)
|++|++++|.+..+|. .+..+++|++|++++|. +....|..+..+++|+.+++++ .....+..++.+++|++|++
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 7777777777766665 46677777777777763 3323333444444444444432 11111112444444444444
Q ss_pred eeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccc---cCCCccCeEE
Q 045751 313 HGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL---EKLPLLQVLK 389 (492)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~ 389 (492)
++| . ...++..+ +..+ ++|++|++++|.+.+..+..+ ...+.++.++
T Consensus 206 ~~n--~-l~~~~~~~--------------------------~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 206 HMK--Q-HILLLEIF--------------------------VDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp ECS--C-STTHHHHH--------------------------HHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCC--c-cccchhhh--------------------------hhhc-ccccEEECCCCccccccccccccccccchhhccc
Confidence 444 1 12222211 1112 455555555555544332222 2344455555
Q ss_pred EeccccCCCc---ccccCCCCccccEEeecccCCcceEEEc-cCccccccEEEEeecCCcC
Q 045751 390 LKKNSYLGRK---LTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPKLECLIIDPCAYLK 446 (492)
Q Consensus 390 l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~ 446 (492)
+.++.+.+.. ++..+..+++|+.|++++| .++.+|.. ++.+++|+.|++++|+...
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 5554443321 1222334455555555554 44444443 2455555555555554433
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-23 Score=202.45 Aligned_cols=270 Identities=13% Similarity=0.091 Sum_probs=185.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
|+.....+++++.... ++ ..+ .++|++|++++|.++.+|. .+..+++|++|++++|.+..++...|.++++|
T Consensus 30 C~~~~~c~~~~~~l~~----iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS----IP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp ECTTSEEECCSTTCSS----CC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCeEeeCCCCCccc----cc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 5555556666666551 22 222 2589999999999987764 78899999999999999997765544899999
Q ss_pred cEEecCCCcccchHHH-hhcccccccccccccccCCCCCc--cccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRN--DCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
++|++++|.++.+|.. ++++++|++|++++|.+. .+|. .+..+++|+.+++ ++|
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l----------------------~~n 159 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV----------------------GNM 159 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEE----------------------EES
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEEC----------------------CCC
Confidence 9999999988888766 888999999999998875 3333 3444555555544 444
Q ss_pred cCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccc
Q 045751 316 LSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS 394 (492)
Q Consensus 316 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 394 (492)
. ......+..+..+++|+.|++++ ..+....- .+..+ ++|++|++++|.+.......+..+++|+.|++++|.
T Consensus 160 ~-~~~~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 160 D-TFTKIQRKDFAGLTFLEELEIDA----SDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp S-SCCEECTTTTTTCCEEEEEEEEE----TTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred c-cccccCHHHccCCCCCCEEECCC----CCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 1 01111123344444444444442 11211110 45566 899999999999744333345578999999999998
Q ss_pred cCCCcccc--cCCCCccccEEeecccCCcc-----eEEEccCccccccEEEEeecCCcCccchhc-cCCCCCcEEEecCC
Q 045751 395 YLGRKLTC--GSHGFPKLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIIDPCAYLKRLPKQL-WSVKRFKKLELWRP 466 (492)
Q Consensus 395 ~~~~~~~~--~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c 466 (492)
+.+..... .....+.++.+++.++ .+. .+|..+..+++|+.|++++|... .+|..+ .++++|++|++++|
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 87643211 1234667888888877 333 45666789999999999999755 788774 89999999999998
Q ss_pred C
Q 045751 467 Q 467 (492)
Q Consensus 467 ~ 467 (492)
+
T Consensus 312 ~ 312 (353)
T 2z80_A 312 P 312 (353)
T ss_dssp C
T ss_pred C
Confidence 6
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=9.7e-23 Score=195.51 Aligned_cols=226 Identities=23% Similarity=0.256 Sum_probs=99.2
Q ss_pred CcEEEEEecCCcCCCCchh-hccccccCEEEccCCCCccC---chhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPSG-IENLFFLRYLKLNIPSLKSL---PSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL 264 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~i~~l---p~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 264 (492)
++|++|++++|.++.+|.. +..+++|++|++++|.+..+ |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 3455555555555544432 34555555555555555432 3333 44555555555555554444444455555555
Q ss_pred cccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCC
Q 045751 265 NFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKM 344 (492)
Q Consensus 265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 344 (492)
++++|.+.+..+ ... +..+++|+.|++++| ......+..+..+++|+.|++++
T Consensus 107 ~l~~n~l~~~~~--------------------~~~-~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~---- 159 (306)
T 2z66_A 107 DFQHSNLKQMSE--------------------FSV-FLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG---- 159 (306)
T ss_dssp ECTTSEEESSTT--------------------TTT-TTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT----
T ss_pred ECCCCccccccc--------------------chh-hhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC----
Confidence 555544422111 012 555666666666665 23223333344444444444432
Q ss_pred CCccE--EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc
Q 045751 345 PRLSK--IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE 422 (492)
Q Consensus 345 ~~L~~--L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 422 (492)
..+.. +.-.+..+ ++|++|++++|.+.+..+..+.++++|+.|++++|.+++.. ...+..+++|+.|++++|....
T Consensus 160 n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 160 NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred CccccccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence 01110 10123334 45555555555544444444445555555555555443322 1223344445555554442211
Q ss_pred eEEEccCccc-cccEEEEeecCC
Q 045751 423 EWTMGTGAMP-KLECLIIDPCAY 444 (492)
Q Consensus 423 ~l~~~~~~l~-~L~~L~l~~c~~ 444 (492)
..+..+..++ +|+.|++++|+.
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCHHHHHhhhccCCEEEccCCCe
Confidence 2223333442 444444444443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=6.1e-23 Score=215.27 Aligned_cols=322 Identities=11% Similarity=0.035 Sum_probs=211.0
Q ss_pred CCeeEEEEecCCCCccccccc---CCC-eeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhc
Q 045751 139 KMIKRLTANVNLSELDSLEDF---NLY-LHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIE 209 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~ 209 (492)
..++++.+..+.........+ ++. |++|++.++... +.........++++|++|+|++|.++. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 568888888554443332333 344 999999887632 123444556688999999999998652 344556
Q ss_pred cccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccC------------
Q 045751 210 NLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLP------------ 272 (492)
Q Consensus 210 ~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~------------ 272 (492)
.+++|++|+++++.+. .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.+...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 7889999999998886 334334 7899999999999988888888889999999988743221
Q ss_pred --------------CCCCccccCCcccceeecCCCC---ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751 273 --------------AYPRNDCGSLENLNFISALHPR---CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES 335 (492)
Q Consensus 273 --------------~~~p~~~~~l~~L~~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 335 (492)
..+|..+..+++|+.|++++.. ..+...+..+++|++|+++++ .....++.....+++|+.
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCE
Confidence 1233334446667777766422 112222467777777777744 344445555567778888
Q ss_pred EEeec-----------CC-----------CCCCccEEEe-----------ecC-CCCCCceEEEEec----ccCCCC---
Q 045751 336 LKLVN-----------ES-----------KMPRLSKIVL-----------DEY-QFPPSLTHLSFSN----TELMED--- 374 (492)
Q Consensus 336 L~l~~-----------~~-----------~~~~L~~L~l-----------~~~-~lp~~L~~L~L~~----~~l~~~--- 374 (492)
|+++. +. .+++|+.|.+ .+. .+ ++|++|++++ +.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHH
Confidence 88872 11 4777887777 222 26 7788888863 334332
Q ss_pred --CcccccCCCccCeEEEeccc--cCCCcccccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcC-c
Q 045751 375 --PMPTLEKLPLLQVLKLKKNS--YLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLK-R 447 (492)
Q Consensus 375 --~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~-~ 447 (492)
.+..+.++++|+.|+++.|. +++..+......+++|+.|++++| .++ .++..+..+++|+.|++++|+... .
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 11224567888888886433 444333333345788888888887 444 334445778899999999998433 2
Q ss_pred cchhccCCCCCcEEEecCCC
Q 045751 448 LPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 448 lp~~l~~l~~L~~L~l~~c~ 467 (492)
++.....+++|++|++++|.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhcCccCeeECcCCc
Confidence 45556678899999999987
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.2e-22 Score=202.59 Aligned_cols=223 Identities=17% Similarity=0.191 Sum_probs=110.4
Q ss_pred cEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccc
Q 045751 190 FLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFG 267 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~ 267 (492)
++++|+|++|.++.+ |..|..+++|++|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 445555555554422 34445555555555555555544433334555555555555544444432 4444555555554
Q ss_pred ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
+|.+.. .+...+..+++|+.|++++| .....++..
T Consensus 156 ~N~l~~----------------------~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~--------------------- 190 (452)
T 3zyi_A 156 NNPIES----------------------IPSYAFNRVPSLMRLDLGEL--KKLEYISEG--------------------- 190 (452)
T ss_dssp SCCCCE----------------------ECTTTTTTCTTCCEEECCCC--TTCCEECTT---------------------
T ss_pred CCCcce----------------------eCHhHHhcCCcccEEeCCCC--CCccccChh---------------------
Confidence 444321 11112555666666666654 122222110
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EE
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TM 426 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~ 426 (492)
.+..+ ++|++|++++|.+.+. +.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.+ +.
T Consensus 191 -----~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~ 260 (452)
T 3zyi_A 191 -----AFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNS-QVSLIERN 260 (452)
T ss_dssp -----TTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTS-CCCEECTT
T ss_pred -----hccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCC-cCceECHH
Confidence 23344 5555666666555332 23555666666666666554432 334555666666666665 44433 23
Q ss_pred ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 35566666666666665443233344556666666666544
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=6.8e-24 Score=215.58 Aligned_cols=301 Identities=15% Similarity=0.055 Sum_probs=219.1
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-CchhHHh
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-LPSSFLS 233 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~ 233 (492)
.++|++|+++++... .......+..+++|++|++++|.++ .++..+..+++|++|++++|.+.. .+..++.
T Consensus 2 ~~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 367999999999875 3344556889999999999999988 457778889999999999999984 3445545
Q ss_pred cCC----CccEEecCCCccc-----chHHHhhcccccccccccccccCCCCCccccC-----CcccceeecCCCCc----
Q 045751 234 SIS----NLYTLDMPFSYIH-----HTADVFWEMNKLRHLNFGLFTLPAYPRNDCGS-----LENLNFISALHPRC---- 295 (492)
Q Consensus 234 ~l~----~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~-----l~~L~~l~~~~~~~---- 295 (492)
.++ +|++|++++|.+. .+|..+..+++|++|++++|.+....+..+.. .++|+.|++++..-
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 566 7999999999776 56888999999999999999876544433322 56799999985211
Q ss_pred --cchhhhCCCcccceEEeeeccCcchhhHHHHhh-----cCCCCCeEEeecCC--------------CCCCccEEEe--
Q 045751 296 --CTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLY-----KLSSLESLKLVNES--------------KMPRLSKIVL-- 352 (492)
Q Consensus 296 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~--------------~~~~L~~L~l-- 352 (492)
.++..+..+++|++|++++| ......+..+. ..++|+.|+++++. .+++|+.|++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNN--DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS--BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhCCCCCEEECcCC--CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 12333777899999999998 34443333333 36799999999732 4678888887
Q ss_pred --------------ecCCCCCCceEEEEecccCCCC----CcccccCCCccCeEEEeccccCCCcccc----cCCCCccc
Q 045751 353 --------------DEYQFPPSLTHLSFSNTELMED----PMPTLEKLPLLQVLKLKKNSYLGRKLTC----GSHGFPKL 410 (492)
Q Consensus 353 --------------~~~~lp~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~L 410 (492)
....+ ++|++|++++|.++.. .+..+.++++|+.|++++|.+.+..... .....++|
T Consensus 237 n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred CcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 11246 7889999998887554 3445667889999999888775432111 11234689
Q ss_pred cEEeecccCCcce-----EEEccCccccccEEEEeecCCcCccch----hccC-CCCCcEEEecCCC
Q 045751 411 KVLHLKSMLWLEE-----WTMGTGAMPKLECLIIDPCAYLKRLPK----QLWS-VKRFKKLELWRPQ 467 (492)
Q Consensus 411 ~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~c~ 467 (492)
+.|++++|. ++. ++..+..+++|+.|++++|......+. .+.. .++|++|++++|.
T Consensus 316 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred eeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 999999884 442 344566778999999999865543233 2322 6799999999986
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=7.1e-23 Score=196.45 Aligned_cols=241 Identities=21% Similarity=0.190 Sum_probs=179.2
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC---chhhccccccCEEEc
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL---PSGIENLFFLRYLKL 219 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~l 219 (492)
.+....+....++ ..+.+++++|+++++.+. ..+...|.++++|++|++++|.++.+ +..+..+++|++|++
T Consensus 11 ~l~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKGLTSVP-TGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSCCSSCC-SCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCCcccCC-CCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4444434444444 334689999999999876 35556789999999999999998844 677788999999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchHH--HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccc
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCT 297 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~ 297 (492)
++|.+..+|..+ ..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..|..+..+++|
T Consensus 86 s~n~i~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 152 (306)
T 2z66_A 86 SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------ 152 (306)
T ss_dssp CSCSEEEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC------------
T ss_pred CCCccccChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC------------
Confidence 999999999887 999999999999998888864 68899999999999998765555554444444
Q ss_pred hhhhCCCcccceEEeeeccCcchh-hHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751 298 PDILGRLPNLRKLRIHGDLSNNQS-LLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 298 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
++|++++| ...+ ..|..+..+++|+.|++++ ..++.+.. .+..+ ++|++|++++|.+.+..
T Consensus 153 ----------~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 153 ----------EVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQ----CQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp ----------CEEECTTC--EEGGGEECSCCTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECTTSCCSBCC
T ss_pred ----------CEEECCCC--ccccccchhHHhhCcCCCEEECCC----CCcCCcCHHHhcCC-CCCCEEECCCCccCccC
Confidence 44444444 2222 2344445555555555542 22332211 45667 89999999999987777
Q ss_pred cccccCCCccCeEEEeccccCCCcccccCCCCc-cccEEeecccC
Q 045751 376 MPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFP-KLKVLHLKSML 419 (492)
Q Consensus 376 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 419 (492)
+..+..+++|+.|++++|.+.+.. +..+..++ +|+.|++++|+
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCC
T ss_pred hhhccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCC
Confidence 778899999999999999987654 44566774 99999999984
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=6.9e-22 Score=199.65 Aligned_cols=288 Identities=20% Similarity=0.190 Sum_probs=195.6
Q ss_pred CCCeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEE
Q 045751 138 RKMIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYL 217 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 217 (492)
..+++++.+..+.+..++ ...++|++|++++|.... . + .+.++++|++|++++|.++.+|..+ .+|++|
T Consensus 110 ~~~L~~L~l~~n~l~~l~--~~~~~L~~L~L~~n~l~~----l-p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEK----L-P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI 178 (454)
T ss_dssp CTTCCEEECCSSCCSCCC--SCCTTCCEEECCSSCCSS----C-C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred cCCCcEEECCCCccCccc--CCCCCCCEEECcCCCCCC----C-c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence 468899999866555433 124799999999998862 2 2 4899999999999999998887654 489999
Q ss_pred EccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-Ccc
Q 045751 218 KLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RCC 296 (492)
Q Consensus 218 ~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~~ 296 (492)
++++|.+..+| .+ +++++|++|++++|.+..+|.. .++|++|++++|.+. .+| .++.+++|+.+++++. ...
T Consensus 179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 99999999988 46 8999999999999988877653 358999999999886 677 4888999999999752 222
Q ss_pred chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCC------CCCCccEEEe------ecCCCCCCceEE
Q 045751 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNES------KMPRLSKIVL------DEYQFPPSLTHL 364 (492)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L 364 (492)
++. .+++|+.|++++|. . ..+|. ..++|+.|+++++. .+++|+.|++ .+..+|++|++|
T Consensus 252 l~~---~~~~L~~L~l~~N~--l-~~l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L 322 (454)
T 1jl5_A 252 LPD---LPPSLEALNVRDNY--L-TDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322 (454)
T ss_dssp CCS---CCTTCCEEECCSSC--C-SCCCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE
T ss_pred ccc---cccccCEEECCCCc--c-cccCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE
Confidence 222 24789999999883 2 22332 24788999998732 3467888877 344565699999
Q ss_pred EEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcc--eEEEccCcc-----------
Q 045751 365 SFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAM----------- 431 (492)
Q Consensus 365 ~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l----------- 431 (492)
++++|.+.+ .+. .+++|+.|++++|.++.. +. .+++|++|++++|.... .+|..++.+
T Consensus 323 ~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~~l--p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 323 NVSNNKLIE-LPA---LPPRLERLIASFNHLAEV--PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred ECCCCcccc-ccc---cCCcCCEEECCCCccccc--cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 999999865 333 268999999999988742 33 57899999999984433 466667766
Q ss_pred --ccccEEEEeecCCcC--ccchhccCCCCCcEEEecCCC
Q 045751 432 --PKLECLIIDPCAYLK--RLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 432 --~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 467 (492)
++|+.|++++|+..+ .+|. +++.|.+.+|.
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp ----------------------------------------
T ss_pred ccCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 899999999998765 5664 45556666653
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=199.59 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=100.7
Q ss_pred cEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFG 267 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~ 267 (492)
++++|+|++|.++.++ ..+..+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 4444455544444322 344444445555555444444443333444445555554444444433 24444444444444
Q ss_pred ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH-HHhhcCCCCCeEEeecCCCCCC
Q 045751 268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS-KSLYKLSSLESLKLVNESKMPR 346 (492)
Q Consensus 268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 346 (492)
+|.+. ..+...+..+++|+.|++++| .....++ ..+..+++
T Consensus 145 ~N~i~----------------------~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~-------------- 186 (440)
T 3zyj_A 145 NNPIE----------------------SIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSN-------------- 186 (440)
T ss_dssp SCCCC----------------------EECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCSS--------------
T ss_pred CCccc----------------------ccCHHHhhhCcccCEeCCCCC--CCcceeCcchhhcccc--------------
Confidence 44432 112222556666677776664 1222222 23444444
Q ss_pred ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-
Q 045751 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT- 425 (492)
Q Consensus 347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~- 425 (492)
|++|++++|.+... +.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++| .++.++
T Consensus 187 --------------L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~ 248 (440)
T 3zyj_A 187 --------------LRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQS-QIQVIER 248 (440)
T ss_dssp --------------CCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred --------------cCeecCCCCcCccc--cccCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCC-ceeEECh
Confidence 44455544444321 13445555555555555444321 333444555555555554 333332
Q ss_pred EccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 426 MGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 426 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..+..+++|+.|++++|......+..+..+++|+.|+++++|
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 234455555555555554333222334455555555555543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.3e-22 Score=192.55 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=138.5
Q ss_pred CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc-ccch-HHHhhccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY-IHHT-ADVFWEMNKLRHLN 265 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~ 265 (492)
++|++|++++|.++.++ ..+..+++|++|++++|.+..++...|..+++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666666666444 345666666666666666665433222666666666666664 5555 34455666666666
Q ss_pred ccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCC
Q 045751 266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMP 345 (492)
Q Consensus 266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 345 (492)
+++|.+.+..|.. +..+++|++|++++| ......+..+..+++|+.|++++ .
T Consensus 112 l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~----n 163 (285)
T 1ozn_A 112 LDRCGLQELGPGL----------------------FRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG----N 163 (285)
T ss_dssp CTTSCCCCCCTTT----------------------TTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS----S
T ss_pred CCCCcCCEECHhH----------------------hhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCC----C
Confidence 6666554433333 445555555555555 22222223345555555555552 2
Q ss_pred CccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE
Q 045751 346 RLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW 424 (492)
Q Consensus 346 ~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 424 (492)
.++.+.- .+..+ ++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..+++|+.|++++|+-....
T Consensus 164 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 164 RISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSG
T ss_pred cccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCCC
Confidence 3333322 35556 77777888777776666777777888888888877776532 333567778888888877322111
Q ss_pred EEccCccccccEEEEeecCCcCccchhccC--CCCCcEEEecCC
Q 045751 425 TMGTGAMPKLECLIIDPCAYLKRLPKQLWS--VKRFKKLELWRP 466 (492)
Q Consensus 425 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c 466 (492)
+ .......++.+....+......|..+.. +..++..++.||
T Consensus 242 ~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 242 R-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp G-GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred C-cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 1 0111233445555555555556655533 455666666666
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.3e-23 Score=200.81 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=143.4
Q ss_pred hhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhc
Q 045751 179 LDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE 257 (492)
Q Consensus 179 ~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~ 257 (492)
......+..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+++ + ..+++|++|++++|.+..+| .
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~----~ 97 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELL----V 97 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEE----E
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCcccccc----C
Confidence 355667778889999999999988654 678899999999999999986665 5 89999999999999887766 3
Q ss_pred ccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCe
Q 045751 258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLES 335 (492)
Q Consensus 258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 335 (492)
.++|++|++++|.+.+..+.. +++|+.+++++ .....+..++.+++|+.|++++| ......+..+.
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~------- 165 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELA------- 165 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--CCCEEEGGGGG-------
T ss_pred CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--CCCcccHHHHh-------
Confidence 488999999988875433322 34455555542 11122212444555555555555 22222222221
Q ss_pred EEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEee
Q 045751 336 LKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHL 415 (492)
Q Consensus 336 L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 415 (492)
..+ ++|++|++++|.+... .....+++|+.|++++|.+.+. +..+..+++|+.|++
T Consensus 166 -------------------~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 166 -------------------ASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISL 221 (317)
T ss_dssp -------------------GGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEEC
T ss_pred -------------------hcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc--hhhhcccCcccEEEC
Confidence 233 4455555555544322 1222355555555555554431 222445555555555
Q ss_pred cccCCcceEEEccCccccccEEEEeecCCc-CccchhccCCCCCcEEEecC
Q 045751 416 KSMLWLEEWTMGTGAMPKLECLIIDPCAYL-KRLPKQLWSVKRFKKLELWR 465 (492)
Q Consensus 416 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~ 465 (492)
++| .++.+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+
T Consensus 222 ~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 222 RNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 555 44455555555555555555555544 34444555555555555543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-21 Score=198.25 Aligned_cols=242 Identities=21% Similarity=0.226 Sum_probs=174.5
Q ss_pred eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL 219 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l 219 (492)
.+.+.........++ ..+.+++++|++++|.+. ...+..|.++++|++|+|++|.++.++ ..+..+++|++|++
T Consensus 56 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSSCC-SCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCccC-CCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 345555534444444 344789999999999886 355678899999999999999998554 78899999999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCc-cccCCcccceeecCC-CCcc
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALH-PRCC 296 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~-~~~~ 296 (492)
++|.+..+|...|..+++|++|++++|.+..+|. .+.++++|+.|++++|...+.++. .+..+++|+.|++++ ....
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999999998866999999999999999988875 588999999999998765555554 456677788877764 3333
Q ss_pred chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
++. +..+++|+.|++++| ......+..+..+++|+.|++++ ..+..+.. .+..+ ++|+.|+|++|.+....
T Consensus 211 ~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 211 MPN-LTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMN----SQVSLIERNAFDGL-ASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CCC-CTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred ccc-ccccccccEEECcCC--cCcccCcccccCccCCCEEEeCC----CcCceECHHHhcCC-CCCCEEECCCCcCCccC
Confidence 445 677777777777777 34444456666676777776653 23333221 34555 66666666666665555
Q ss_pred cccccCCCccCeEEEecccc
Q 045751 376 MPTLEKLPLLQVLKLKKNSY 395 (492)
Q Consensus 376 ~~~l~~l~~L~~L~l~~~~~ 395 (492)
+..+..+++|+.|++++|.+
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 55566666666666666654
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=5.5e-21 Score=199.14 Aligned_cols=261 Identities=16% Similarity=0.031 Sum_probs=156.5
Q ss_pred CeeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEc
Q 045751 140 MIKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKL 219 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l 219 (492)
.++.+.+..+.+..++ ..+.++|++|++++|.+.. ++. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp-~~l~~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLP-DCLPAHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCC-SCCCTTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccC-hhhCCCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 4678888866666554 3336899999999998762 221 57889999999999988887 6788999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccch
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTP 298 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~ 298 (492)
++|.+..+|. .+++|+.|++++|.+..+|.. +++|++|++++|.+.+ +|.. +.+|+.|++++ ....++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCCCc
Confidence 9999998885 578899999999988888763 4889999999988753 4432 34555555543 111111
Q ss_pred hhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccc
Q 045751 299 DILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPT 378 (492)
Q Consensus 299 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~ 378 (492)
..+++|+.|++++|. ...+|. ..++|+.|++++ ..+.. +...+++|++|++++|.+.+ .+
T Consensus 178 ---~~~~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~----N~l~~----l~~~~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQ---LASLPT---LPSELYKLWAYN----NRLTS----LPALPSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp ---CCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCS----SCCSS----CCCCCTTCCEEECCSSCCSC-CC--
T ss_pred ---ccCCCCcEEECCCCC---CCCCCC---ccchhhEEECcC----Ccccc----cCCCCCCCCEEEccCCccCc-CC--
Confidence 234566666666662 111221 124455555542 11221 11111455555555555433 11
Q ss_pred ccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccch
Q 045751 379 LEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPK 450 (492)
Q Consensus 379 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 450 (492)
..+++|+.|++++|.++.. +. .+++|+.|++++| .++.+|..+..+++|+.|++++|+.....|.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~l--p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -CCCCcCcEEECCCCCCCcC--Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3345555555555554421 11 3455555555555 4445555555555555555555554443333
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=194.95 Aligned_cols=242 Identities=18% Similarity=0.223 Sum_probs=186.4
Q ss_pred eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL 219 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l 219 (492)
.+.+.........++ ..+.++++.|++++|.+. ......|.++++|++|+|++|.++.++ ..|..+++|++|++
T Consensus 45 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVP-DGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCC-SCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCC-CCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 345555534444444 344788999999999876 355577899999999999999998554 77889999999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCc-cccCCcccceeecCC-CCcc
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRN-DCGSLENLNFISALH-PRCC 296 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~l~~~~-~~~~ 296 (492)
++|.++.+|...|..+++|++|++++|.+..+|. .+..+++|++|++++|...+.++. .+..+++|+.|++++ ....
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 9999998888766899999999999998888875 588899999999998665555554 567788888888874 3344
Q ss_pred chhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCC
Q 045751 297 TPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDP 375 (492)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~ 375 (492)
++. +..+++|+.|++++| ......+..+..+++|+.|++++ ..++.+.. .+..+ ++|++|+|++|.++...
T Consensus 200 ~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 200 IPN-LTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQ----SQIQVIERNAFDNL-QSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CCC-CTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTT----CCCCEECTTSSTTC-TTCCEEECTTSCCCCCC
T ss_pred ccc-cCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCC----CceeEEChhhhcCC-CCCCEEECCCCCCCccC
Confidence 455 788888999999888 45555567788888888888874 34444432 46677 88888888888887777
Q ss_pred cccccCCCccCeEEEecccc
Q 045751 376 MPTLEKLPLLQVLKLKKNSY 395 (492)
Q Consensus 376 ~~~l~~l~~L~~L~l~~~~~ 395 (492)
+..+..+++|+.|++++|.+
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 77778888888888887764
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=8.8e-23 Score=196.29 Aligned_cols=222 Identities=20% Similarity=0.187 Sum_probs=113.5
Q ss_pred EEEEEecCCcCC--CCchhhc-------cccccCEEEccCCCCc-cCchhHH-hcCCCccEEecCCCcccchHHHhhcc-
Q 045751 191 LRVLDLGSLVLS--QLPSGIE-------NLFFLRYLKLNIPSLK-SLPSSFL-SSISNLYTLDMPFSYIHHTADVFWEM- 258 (492)
Q Consensus 191 L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~i~-~lp~~~~-~~l~~L~~L~L~~~~l~~lp~~~~~l- 258 (492)
|++|++++|.++ .+|..+. .+++|++|++++|.+. .+|..+| ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 555566666553 3444443 4566666666666665 4555432 55666666666666555555545554
Q ss_pred ----cccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhh--HHHHhhcCCC
Q 045751 259 ----NKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSL--LSKSLYKLSS 332 (492)
Q Consensus 259 ----~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~ 332 (492)
++|++|++++|.+.+..|.. ++.+++|+.|++++| ...+. .+..+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N--~l~~~~~~~~~~----- 195 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQ----------------------VRVFPALSTLDLSDN--PELGERGLISAL----- 195 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTT----------------------CCCCSSCCEEECCSC--TTCHHHHHHHHS-----
T ss_pred HhhcCCCcEEEeeCCCCccchHHH----------------------hccCCCCCEEECCCC--CcCcchHHHHHH-----
Confidence 56666666666554333333 445555555555555 22221 22222
Q ss_pred CCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC--Cc-ccccCCCccCeEEEeccccCCCcccccCCCCcc
Q 045751 333 LESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED--PM-PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPK 409 (492)
Q Consensus 333 L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 409 (492)
.+..+ ++|++|++++|.+... .+ ..+.++++|+.|++++|.+.+......+..+++
T Consensus 196 --------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 196 --------------------CPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp --------------------CTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred --------------------HhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 11233 4455555555554321 11 122345566666666555554331122344556
Q ss_pred ccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 410 LKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 410 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|+.|++++| .++.+|..+. ++|+.|++++|... .+|. +..+++|++|++++++
T Consensus 255 L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred CCEEECCCC-ccChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence 666666665 4455554443 56666666666533 3344 5566666666666654
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.6e-21 Score=204.46 Aligned_cols=304 Identities=15% Similarity=0.069 Sum_probs=187.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCccCchhHHhc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS 234 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~ 234 (492)
+++|++|++++|.............+..+++|++|++++|.++ .++..+..+++|++|++++|.+..+|..+ .+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~-~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-KA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH-HH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH-hh
Confidence 4555555555554321111123334444455555555554443 22223334445555555554444444333 44
Q ss_pred CC---------------------------CccEEecCCCcccchHHHhhcccccccccccccccCCCCC-ccccCCcccc
Q 045751 235 IS---------------------------NLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPR-NDCGSLENLN 286 (492)
Q Consensus 235 l~---------------------------~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~ 286 (492)
++ +|+.|+++++....+|..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 44 4444444444445567667788889999988887544333 3345678888
Q ss_pred eeecCC--CCccchhhhCCCcccceEEeee----------ccCcchhhHHHHhhcCCCCCeEEeecCC-----------C
Q 045751 287 FISALH--PRCCTPDILGRLPNLRKLRIHG----------DLSNNQSLLSKSLYKLSSLESLKLVNES-----------K 343 (492)
Q Consensus 287 ~l~~~~--~~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----------~ 343 (492)
.|++.+ ....++.....+++|++|++++ |.......+......+++|++|+++.+. .
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 887763 1112233245678888888884 3212233445555668888888885422 3
Q ss_pred CCCccEEEee--------------------cCCCCCCceEEEEeccc--CCCCCccccc-CCCccCeEEEeccccCCCcc
Q 045751 344 MPRLSKIVLD--------------------EYQFPPSLTHLSFSNTE--LMEDPMPTLE-KLPLLQVLKLKKNSYLGRKL 400 (492)
Q Consensus 344 ~~~L~~L~l~--------------------~~~lp~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~ 400 (492)
+++|+.|.+. +..+ ++|++|+++.|. +++..+..++ .+++|+.|++++|.+++..+
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 7788888772 3347 899999998765 5444444454 58999999999999877665
Q ss_pred cccCCCCccccEEeecccCCcc--eEEEccCccccccEEEEeecCCcCc-cchhccCCCCCcEEEecCC
Q 045751 401 TCGSHGFPKLKVLHLKSMLWLE--EWTMGTGAMPKLECLIIDPCAYLKR-LPKQLWSVKRFKKLELWRP 466 (492)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 466 (492)
+....++++|+.|++++|+ ++ .++.....+++|+.|++++|..... +......++.+....+...
T Consensus 481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 5556789999999999996 54 2344456799999999999996543 2223356788887777665
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=5.7e-21 Score=184.07 Aligned_cols=237 Identities=16% Similarity=0.116 Sum_probs=173.8
Q ss_pred CcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFG 267 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~ 267 (492)
..++.++++.+.+...+ ..+..+++|++|++++|.+..+++..|.++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34667777777766444 444667899999999999998876555999999999999998877665 8899999999999
Q ss_pred ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
+|.+.+ ++ ..++|+.+++++..-.-.. ...+++|+.|++++|. .....+.
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~--l~~~~~~---------------------- 138 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDL---------------------- 138 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSC--CCSGGGB----------------------
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCC--CCCccch----------------------
Confidence 998642 11 2345555555421100001 1223444444444441 1111000
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccc-cCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTL-EKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM 426 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 426 (492)
.+..+ ++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++. .....+++|+.|++++| .++.++.
T Consensus 139 -----~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N-~l~~l~~ 208 (317)
T 3o53_A 139 -----DEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSN-KLAFMGP 208 (317)
T ss_dssp -----CTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSS-CCCEECG
T ss_pred -----hhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCC-cCCcchh
Confidence 34556 889999999999877666666 4799999999999998754 22345899999999998 8888888
Q ss_pred ccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 427 GTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 427 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+..+++|+.|++++|... .+|..+..+++|+.|++++|+
T Consensus 209 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 8999999999999999754 789899999999999999987
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=8.7e-21 Score=197.62 Aligned_cols=256 Identities=20% Similarity=0.069 Sum_probs=183.4
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
..++++|+++++.+.. + +..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|+
T Consensus 39 ~~~l~~L~ls~n~L~~----l-p~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESGLTT----L-PDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSCCSC----C-CSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCC
T ss_pred CCCCcEEEecCCCcCc----c-ChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCC
Confidence 3468888888887762 2 22222 688888888888888877 46788888888888888875 578888
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCC-CccchhhhCCCcccceEEeeeccCc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP-RCCTPDILGRLPNLRKLRIHGDLSN 318 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (492)
+|++++|.+..+|. .+++|+.|++++|.+.. +|.. +++|+.|++++. ...++ ..+.+|+.|++++|.
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~-- 172 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQ-- 172 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC--
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC---CccCCCCEEECCCCC--
Confidence 88888888888776 56788888888888753 5554 477888888642 11121 234678888888872
Q ss_pred chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751 319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398 (492)
Q Consensus 319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 398 (492)
...+| ..+++|+.|++++ ..++. +...+++|+.|++++|.+.. .+. .+++|+.|++++|.+++.
T Consensus 173 -l~~l~---~~~~~L~~L~Ls~----N~l~~----l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 173 -LTSLP---MLPSGLQELSVSD----NQLAS----LPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp -CSCCC---CCCTTCCEEECCS----SCCSC----CCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC
T ss_pred -CCCCc---ccCCCCcEEECCC----CCCCC----CCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC
Confidence 23344 4567888888874 23332 22223788888888888753 222 347888888888877652
Q ss_pred cccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 399 KLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
+ ..+++|+.|++++| .++.+|. .+++|+.|++++|... .+|..+.++++|+.|++++|+
T Consensus 237 --p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 237 --P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred --C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 2 56688888888887 6777765 6788888888888654 788888888888888888886
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=6.7e-21 Score=199.78 Aligned_cols=322 Identities=16% Similarity=0.139 Sum_probs=216.4
Q ss_pred CCeeEEEEecCCCCccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-----Cchhhcc
Q 045751 139 KMIKRLTANVNLSELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-----LPSGIEN 210 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~ 210 (492)
.+++++.+..+.........+ +++|++|++.++... +.......+.++++|++|++++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 478888888655444333333 799999999988432 122355666789999999999998662 3333346
Q ss_pred ccccCEEEccCCC--Cc--cCchhHHhcCCCccEEecCCC-cccchHHHhhccccccccccccccc--------------
Q 045751 211 LFFLRYLKLNIPS--LK--SLPSSFLSSISNLYTLDMPFS-YIHHTADVFWEMNKLRHLNFGLFTL-------------- 271 (492)
Q Consensus 211 l~~L~~L~l~~~~--i~--~lp~~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~~~~-------------- 271 (492)
+++|++|+++++. +. .++.-+ .++++|++|++++| .+..+|..+..+++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 7799999999886 33 233333 67899999999998 6777888888889999987654421
Q ss_pred ------------C----CCCCccccCCcccceeecCCCC---ccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCC
Q 045751 272 ------------P----AYPRNDCGSLENLNFISALHPR---CCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSS 332 (492)
Q Consensus 272 ------------~----~~~p~~~~~l~~L~~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 332 (492)
. ..+|..+..+++|+.|++++.. ..+...+..+++|++|++++| .....++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCC
Confidence 0 1122222246788888887532 112233568899999999987 344455555567899
Q ss_pred CCeEEeec---------CC-----------CCCCccEEEe-----------ec-CCCCCCceEEEEe--c----ccCCCC
Q 045751 333 LESLKLVN---------ES-----------KMPRLSKIVL-----------DE-YQFPPSLTHLSFS--N----TELMED 374 (492)
Q Consensus 333 L~~L~l~~---------~~-----------~~~~L~~L~l-----------~~-~~lp~~L~~L~L~--~----~~l~~~ 374 (492)
|+.|++.. +. .+++|+.|.+ .+ ..+ ++|++|+++ + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCC
Confidence 99999832 11 3788888866 12 247 889999998 3 334322
Q ss_pred Cc-----ccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce--EEEccCccccccEEEEeecCCcCc
Q 045751 375 PM-----PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE--WTMGTGAMPKLECLIIDPCAYLKR 447 (492)
Q Consensus 375 ~~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~ 447 (492)
.. ..+..+++|+.|++++ .+++..+......+++|+.|++++|. ++. +......+++|+.|++++|+....
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 11 1256788999999975 55544333222348899999999984 432 221225689999999999997432
Q ss_pred -cchhccCCCCCcEEEecCCCH
Q 045751 448 -LPKQLWSVKRFKKLELWRPQP 468 (492)
Q Consensus 448 -lp~~l~~l~~L~~L~l~~c~~ 468 (492)
++..+..+++|++|++++|+.
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhCCCCCEEeeeCCCC
Confidence 233456789999999999983
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.7e-21 Score=193.79 Aligned_cols=235 Identities=15% Similarity=0.092 Sum_probs=166.8
Q ss_pred cCCcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLN 265 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 265 (492)
.+++|++|+|++|.++.+ |..++.+++|++|++++|.+..+++ + +.+++|++|++++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 344899999999999865 4688999999999999999986665 5 899999999999998887763 38899999
Q ss_pred ccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCC
Q 045751 266 FGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMP 345 (492)
Q Consensus 266 L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 345 (492)
+++|.+.+..+. .+++|+.|++++| ......|..++.+++|+.|++++ .
T Consensus 106 L~~N~l~~~~~~-------------------------~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~----N 154 (487)
T 3oja_A 106 AANNNISRVSCS-------------------------RGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL----N 154 (487)
T ss_dssp CCSSCCCCEEEC-------------------------CCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT----S
T ss_pred CcCCcCCCCCcc-------------------------ccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC----C
Confidence 999987543322 2345555666655 23333344445555555555542 2
Q ss_pred CccEEEe-ecC-CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce
Q 045751 346 RLSKIVL-DEY-QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE 423 (492)
Q Consensus 346 ~L~~L~l-~~~-~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 423 (492)
.+..... .+. .+ ++|++|+|++|.+.+. .....+++|+.|++++|.+++. +..+..+++|+.|++++| .++.
T Consensus 155 ~l~~~~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~ 228 (487)
T 3oja_A 155 EIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVL 228 (487)
T ss_dssp CCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCE
T ss_pred CCCCcChHHHhhhC-CcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcc
Confidence 2332221 222 45 7777888888876543 2344688888888888887653 344677888888888887 6777
Q ss_pred EEEccCccccccEEEEeecCCc-CccchhccCCCCCcEEEec
Q 045751 424 WTMGTGAMPKLECLIIDPCAYL-KRLPKQLWSVKRFKKLELW 464 (492)
Q Consensus 424 l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 464 (492)
+|..++.+++|+.|++++|+.. ..+|..+..+++|+.+++.
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8877888888888888888866 3566777778888777765
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=188.41 Aligned_cols=227 Identities=16% Similarity=0.114 Sum_probs=161.8
Q ss_pred CeeEEEeecCCCCCCCchhHHHH-------hccCCcEEEEEecCCcCC-CCchhh--ccccccCEEEccCCCCccCchhH
Q 045751 162 YLHSLLCLSSESHHLDPLDCEKI-------CKMFKFLRVLDLGSLVLS-QLPSGI--ENLFFLRYLKLNIPSLKSLPSSF 231 (492)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~-------~~~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~l~~~~i~~lp~~~ 231 (492)
.|+.|+++++.+.. . ..+.. +.++++|++|++++|.++ .+|..+ +.+++|++|++++|.+..+|..+
T Consensus 64 ~L~~L~L~~n~l~~--~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 140 (312)
T 1wwl_A 64 IIKSLSLKRLTVRA--A-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140 (312)
T ss_dssp HHHHCCCCEEEEEE--E-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred HHhhcccccccccC--C-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence 37788887776631 1 11122 237899999999999998 788776 89999999999999999888776
Q ss_pred HhcC-----CCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchh-hhCCC
Q 045751 232 LSSI-----SNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPD-ILGRL 304 (492)
Q Consensus 232 ~~~l-----~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~-~l~~l 304 (492)
+.+ ++|++|++++|.+..++ ..++.+++|++|++++|.+.+..+ .+.. .++.+
T Consensus 141 -~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l 200 (312)
T 1wwl_A 141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------------------LISALCPLKF 200 (312)
T ss_dssp -HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-------------------HHHHSCTTSC
T ss_pred -HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-------------------HHHHHHhccC
Confidence 777 99999999999998887 679999999999999998643211 1111 03778
Q ss_pred cccceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCc-ccccCC
Q 045751 305 PNLRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPM-PTLEKL 382 (492)
Q Consensus 305 ~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~-~~l~~l 382 (492)
++|++|++++|.-.....++.. +..+ ++|++|++++|.+.+..+ ..+..+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAAR----------------------------VQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTT----------------------------CCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcC----------------------------CCCCEEECCCCcCCcccchhhhhhc
Confidence 8899999998832111233332 2333 556666666666655443 345567
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCc
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYL 445 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 445 (492)
++|+.|++++|.++. ++..+. ++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus 253 ~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccCh--hhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 788888888887762 233222 78888888887 6676665 778888888888888754
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.8e-21 Score=197.06 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=179.3
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|++|++++|.+. ...+..|.++++|++|+|++|.++..++ ++.+++|++|++++|.+..+| ..++|+
T Consensus 33 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred CCCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 459999999999886 3556789999999999999999986555 899999999999999999776 348999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN 319 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 319 (492)
+|++++|.+..++. ..+++|+.|++++|.+.+..|..++.+++|+.|++ ++| ..
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L----------------------s~N--~l 156 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL----------------------KLN--EI 156 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC----------------------TTS--CC
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC----------------------CCC--CC
Confidence 99999999888764 35789999999999987766665555555555554 444 22
Q ss_pred hhhHHHHhh-cCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751 320 QSLLSKSLY-KLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398 (492)
Q Consensus 320 ~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 398 (492)
....|..+. .+++|+.|++++ ..+..+. ....+ ++|++|++++|.+++.. +.++.+++|+.|++++|.+++
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~----N~l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~- 228 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQY----NFIYDVK-GQVVF-AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL- 228 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTT----SCCCEEE-CCCCC-TTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-
T ss_pred CCcChHHHhhhCCcccEEecCC----Ccccccc-ccccC-CCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-
Confidence 222333333 455555555552 2233332 23346 89999999999986644 458899999999999999875
Q ss_pred cccccCCCCccccEEeecccCCc-ceEEEccCccccccEEEEe
Q 045751 399 KLTCGSHGFPKLKVLHLKSMLWL-EEWTMGTGAMPKLECLIID 440 (492)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~ 440 (492)
++..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 229 -lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4566788999999999999544 2566678889999998886
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=4.9e-20 Score=174.76 Aligned_cols=220 Identities=17% Similarity=0.110 Sum_probs=157.6
Q ss_pred EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccc
Q 045751 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFT 270 (492)
Q Consensus 192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~ 270 (492)
++++.+++.++.+|..+ .++|++|++++|.+..++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67888888888888654 46899999999999988766558899999999999988777 5668888889999888886
Q ss_pred -cCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccE
Q 045751 271 -LPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSK 349 (492)
Q Consensus 271 -~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~ 349 (492)
+....|.. +..+++|++|++++| ......+.
T Consensus 92 ~l~~~~~~~----------------------~~~l~~L~~L~l~~n--~l~~~~~~------------------------ 123 (285)
T 1ozn_A 92 QLRSVDPAT----------------------FHGLGRLHTLHLDRC--GLQELGPG------------------------ 123 (285)
T ss_dssp TCCCCCTTT----------------------TTTCTTCCEEECTTS--CCCCCCTT------------------------
T ss_pred CccccCHHH----------------------hcCCcCCCEEECCCC--cCCEECHh------------------------
Confidence 43221222 667777888888877 22222222
Q ss_pred EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE-EEcc
Q 045751 350 IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW-TMGT 428 (492)
Q Consensus 350 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~ 428 (492)
.+..+ ++|++|++++|.+....+..++++++|+.|++++|.+++.. ...+..+++|+.|++++| .++.+ +..+
T Consensus 124 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 197 (285)
T 1ozn_A 124 ---LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQN-RVAHVHPHAF 197 (285)
T ss_dssp ---TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred ---HhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCC-cccccCHhHc
Confidence 23344 67777777777776655566777888888888877765422 334667788888888887 45554 5567
Q ss_pred CccccccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 429 GAMPKLECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 429 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
..+++|+.|++++|......+..+..+++|++|++++++
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 778888888888887665444567888888888888765
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.6e-19 Score=170.31 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=43.5
Q ss_pred CCceEEEEecccCCCCCcccccCCCccC----eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cCcccc
Q 045751 359 PSLTHLSFSNTELMEDPMPTLEKLPLLQ----VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPK 433 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~ 433 (492)
++|++|++++|.+.+..+..+..+++|+ .|++++|.+.+. +.......+|+.|++++| .++.++.. +..+++
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTS 225 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCS
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc--CccccCCCcccEEECCCC-ceeecCHhHhccccc
Confidence 5555555556655544444444444444 566666655432 122222335666666665 45554433 355666
Q ss_pred ccEEEEeecCCc
Q 045751 434 LECLIIDPCAYL 445 (492)
Q Consensus 434 L~~L~l~~c~~l 445 (492)
|+.|++++|+..
T Consensus 226 L~~L~l~~N~~~ 237 (276)
T 2z62_A 226 LQKIWLHTNPWD 237 (276)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEEccCCccc
Confidence 666666666544
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.9e-19 Score=169.56 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=66.7
Q ss_pred hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751 185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL 264 (492)
Q Consensus 185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 264 (492)
+.++++++.++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++|.+..++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4567778888888888887776654 5788888888888866655458888888888888877777653 677888888
Q ss_pred cccccccCCCCCcc
Q 045751 265 NFGLFTLPAYPRND 278 (492)
Q Consensus 265 ~L~~~~~~~~~p~~ 278 (492)
++++|.+. .+|..
T Consensus 83 ~Ls~N~l~-~l~~~ 95 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLL 95 (290)
T ss_dssp ECCSSCCS-SCCCC
T ss_pred ECCCCcCC-cCchh
Confidence 88887763 34433
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=5.9e-20 Score=178.45 Aligned_cols=255 Identities=16% Similarity=0.171 Sum_probs=156.6
Q ss_pred CeeEEEeecCCCCCCCchhHHHHhccC--CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCc-c-CchhHHhcCCC
Q 045751 162 YLHSLLCLSSESHHLDPLDCEKICKMF--KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLK-S-LPSSFLSSISN 237 (492)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~-~-lp~~~~~~l~~ 237 (492)
.+++++++++... +..+..+ +++++|++++|.++..+..+..+++|++|++++|.+. . +|..+ ..+++
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCC
Confidence 3666777666543 2444444 6677777777776655544566777777777777766 2 55555 77777
Q ss_pred ccEEecCCCccc-chHHHhhccccccccccccc-ccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 238 LYTLDMPFSYIH-HTADVFWEMNKLRHLNFGLF-TLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 238 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~-~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
|++|++++|.+. ..|..++.+++|++|++++| .+.+. .++..+..+++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCC
Confidence 777777777654 45556677777777777766 33211 12222556677777777776
Q ss_pred cCcchhhHHHHhhcCC-CCCeEEeecCCCCC-CccE--EEeecCCCCCCceEEEEeccc-CCCCCcccccCCCccCeEEE
Q 045751 316 LSNNQSLLSKSLYKLS-SLESLKLVNESKMP-RLSK--IVLDEYQFPPSLTHLSFSNTE-LMEDPMPTLEKLPLLQVLKL 390 (492)
Q Consensus 316 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~-~L~~--L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l 390 (492)
.......++..+..++ +|+.|++++ +. .+.. +.-.+..+ ++|++|++++|. +++..+..++++++|+.|++
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 2122223566666777 777777763 21 1211 11033456 788888888887 66666777888899999999
Q ss_pred eccc-cCCCcccccCCCCccccEEeecccCCcceEEEccCcc-ccccEEEEeecCCcCccchhccC
Q 045751 391 KKNS-YLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAM-PKLECLIIDPCAYLKRLPKQLWS 454 (492)
Q Consensus 391 ~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~ 454 (492)
++|. +.... ...+..+++|+.|++++| +..- .+..+ .+|+.|++++|...+..|..+.+
T Consensus 255 ~~~~~~~~~~-~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 255 SRCYDIIPET-LLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCTTCCGGG-GGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCHHH-HHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCcccc
Confidence 8884 33222 223567889999999887 2210 12233 34667778877777666665543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=9.6e-19 Score=167.61 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=89.4
Q ss_pred CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccc
Q 045751 188 FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFG 267 (492)
Q Consensus 188 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~ 267 (492)
+++|++|++++|.++.++ .+..+++|++|++++|.+..++. + ..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 344555555555555444 34555555555555555555544 3 55555555555555554444 25555555555555
Q ss_pred ccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCc
Q 045751 268 LFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRL 347 (492)
Q Consensus 268 ~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L 347 (492)
+|.+.+ + +. +..+++|+.|++++|. .. .++. +..+++|+.|++++ ..+
T Consensus 116 ~n~l~~-~----------------------~~-l~~l~~L~~L~l~~n~--l~-~~~~-l~~l~~L~~L~l~~----n~l 163 (308)
T 1h6u_A 116 STQITD-V----------------------TP-LAGLSNLQVLYLDLNQ--IT-NISP-LAGLTNLQYLSIGN----AQV 163 (308)
T ss_dssp TSCCCC-C----------------------GG-GTTCTTCCEEECCSSC--CC-CCGG-GGGCTTCCEEECCS----SCC
T ss_pred CCCCCC-c----------------------hh-hcCCCCCCEEECCCCc--cC-cCcc-ccCCCCccEEEccC----CcC
Confidence 554321 1 11 3344444444444441 11 1111 22333333333321 011
Q ss_pred cEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751 348 SKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM 418 (492)
Q Consensus 348 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (492)
+.+. .+..+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|
T Consensus 164 ~~~~-~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 164 SDLT-PLANL-SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCG-GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE
T ss_pred CCCh-hhcCC-CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC
Confidence 1110 13344 666666666666643322 566666666666666665432 2456666666666665
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.6e-19 Score=168.48 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEE
Q 045751 359 PSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLI 438 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 438 (492)
++|++|++++|.+.+..+..++++++|+.|++++|.+.+.. +..+..+++|+.|++++|+. .+.+|+|+.|+
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~ 228 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLS 228 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB-------CCCTTTTHHHH
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCc-------cccCcHHHHHH
Confidence 45555555555554444444555666666666665555422 23345566666666666521 23455666666
Q ss_pred EeecCCcCccchhccCCCC
Q 045751 439 IDPCAYLKRLPKQLWSVKR 457 (492)
Q Consensus 439 l~~c~~l~~lp~~l~~l~~ 457 (492)
+..|.....+|..++.++.
T Consensus 229 ~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 229 EWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHTGGGBBCTTSCBCG
T ss_pred HHHHhCCCcccCcccccCC
Confidence 6666655566665554443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=9.7e-19 Score=164.95 Aligned_cols=205 Identities=20% Similarity=0.189 Sum_probs=100.7
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.++|++|++++|.+. ......|.++++|++|++++|.++.++ ..+..+++|++|++++|.+..++...|.++++|
T Consensus 27 ~~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp CTTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 345555665555543 122334555555555555555555333 345555555555555555554443333555555
Q ss_pred cEEecCCCcccchHH-HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccC
Q 045751 239 YTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLS 317 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 317 (492)
++|++++|.+..++. .++.+++|++|++++|.+.+. ..+.. ++.+++|+.|++++|.
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~l~~~-~~~l~~L~~L~Ls~N~- 160 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------------------KLPEY-FSNLTNLEHLDLSSNK- 160 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------------CCCGG-GGGCTTCCEEECCSSC-
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------------------cCchh-hccCCCCCEEECCCCC-
Confidence 555555555544443 255555555555555544321 11222 6666667777777662
Q ss_pred cchhhHHHHhhcCCCCC----eEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEecc
Q 045751 318 NNQSLLSKSLYKLSSLE----SLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKN 393 (492)
Q Consensus 318 ~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 393 (492)
.....+..+..+++|+ .|++++ ..+..+....... .+|++|++++|.+.+..+..+.++++|+.|++++|
T Consensus 161 -l~~~~~~~~~~l~~L~~l~l~L~ls~----n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 161 -IQSIYCTDLRVLHQMPLLNLSLDLSL----NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp -CCEECGGGGHHHHTCTTCCEEEECCS----SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred -CCcCCHHHhhhhhhccccceeeecCC----CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 2222222333333333 444442 2222221112222 35666666666655444444555666666666655
Q ss_pred ccC
Q 045751 394 SYL 396 (492)
Q Consensus 394 ~~~ 396 (492)
.+.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 543
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=3e-20 Score=194.79 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=78.5
Q ss_pred cCCCCCCceEEEEecccCCCCCcccccC-CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcce--EEEccCc
Q 045751 354 EYQFPPSLTHLSFSNTELMEDPMPTLEK-LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEE--WTMGTGA 430 (492)
Q Consensus 354 ~~~lp~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~ 430 (492)
+..+ ++|++|++++ .+++..+..++. +++|+.|++++|.+++..+.....++++|+.|++++|+. +. +......
T Consensus 428 ~~~~-~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~ 504 (594)
T 2p1m_B 428 VEHC-KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASK 504 (594)
T ss_dssp HHHC-TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGG
T ss_pred HhhC-CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHh
Confidence 4467 7999999977 555555555654 899999999999887655444346689999999999965 42 2234567
Q ss_pred cccccEEEEeecCCcCccchhc-cCCCCCcEEEecCC
Q 045751 431 MPKLECLIIDPCAYLKRLPKQL-WSVKRFKKLELWRP 466 (492)
Q Consensus 431 l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c 466 (492)
+++|+.|++++|+....-...+ ..+++|+...+.+.
T Consensus 505 l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 505 LETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 8999999999998743222223 55678876666544
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2e-18 Score=162.17 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=39.5
Q ss_pred EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccc
Q 045751 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLF 269 (492)
Q Consensus 191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 269 (492)
.+.++++++.++.+|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3445555555555554332 3455555555555555443335555555555555555554433 244555555555555
Q ss_pred cc
Q 045751 270 TL 271 (492)
Q Consensus 270 ~~ 271 (492)
.+
T Consensus 96 ~l 97 (270)
T 2o6q_A 96 KL 97 (270)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=4.1e-19 Score=167.12 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=89.1
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|+.|.+.++.+.. ...+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++...|+++++|+
T Consensus 40 l~~L~~L~l~~~~i~~------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCC------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccc------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5666666666665541 123566677777777777666543 466667777777777777766655446677777
Q ss_pred EEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751 240 TLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
+|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++ ....++..++.+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 777777766665543 56667777777777666543333344455555555542 12222222456666666666666
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2e-18 Score=162.19 Aligned_cols=105 Identities=27% Similarity=0.225 Sum_probs=68.6
Q ss_pred CeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccE
Q 045751 162 YLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYT 240 (492)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~ 240 (492)
..++++++++.... + +..+ .++++.|++++|.++.++ ..+..+++|++|++++|.+..+|..+|.++++|++
T Consensus 17 ~~~~l~~~~~~l~~----i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA----I-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSS----C-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCc----c-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 45566666655541 1 1111 245777777777777555 35677777777777777777777766677777777
Q ss_pred EecCCCcccchHHH-hhcccccccccccccccCC
Q 045751 241 LDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPA 273 (492)
Q Consensus 241 L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~ 273 (492)
|++++|.+..+|.. +..+++|++|++++|.+.+
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 77777777666543 5667777777777776643
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=4.3e-20 Score=183.03 Aligned_cols=110 Identities=16% Similarity=0.060 Sum_probs=76.0
Q ss_pred cCCCCCCceEEEEecccCC----CCCcccccCCCccCeEEEeccccCCCcc---cccC--CCCccccEEeecccCCcce-
Q 045751 354 EYQFPPSLTHLSFSNTELM----EDPMPTLEKLPLLQVLKLKKNSYLGRKL---TCGS--HGFPKLKVLHLKSMLWLEE- 423 (492)
Q Consensus 354 ~~~lp~~L~~L~L~~~~l~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~l~~- 423 (492)
+..+ ++|++|+|++|.++ ...+..+..+++|+.|++++|.+.+... +..+ +.+++|+.|++++| .++.
T Consensus 212 l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~ 289 (386)
T 2ca6_A 212 LAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELD 289 (386)
T ss_dssp GGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred hhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence 3445 78888888888875 3455677889999999999998875421 2222 44899999999998 5554
Q ss_pred ----EEEcc-CccccccEEEEeecCCcCccc--hhc-cCCCCCcEEEecC
Q 045751 424 ----WTMGT-GAMPKLECLIIDPCAYLKRLP--KQL-WSVKRFKKLELWR 465 (492)
Q Consensus 424 ----l~~~~-~~l~~L~~L~l~~c~~l~~lp--~~l-~~l~~L~~L~l~~ 465 (492)
+|..+ .++++|+.|++++|+.....+ ..+ ..+++++.+++..
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 66655 568999999999998776443 222 3345555555544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.7e-18 Score=159.59 Aligned_cols=208 Identities=21% Similarity=0.295 Sum_probs=143.0
Q ss_pred CCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc-ccchHH-Hhhcccccccccccc-cccCCCCCc
Q 045751 201 LSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY-IHHTAD-VFWEMNKLRHLNFGL-FTLPAYPRN 277 (492)
Q Consensus 201 l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~-l~~lp~-~~~~l~~L~~L~L~~-~~~~~~~p~ 277 (492)
++.+|. +. .+|++|++++|.++.+|...|.++++|++|++++|. ++.++. .+..+++|++|++++ |.+.. +|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~- 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-ID- 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-EC-
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cC-
Confidence 566666 33 378888888888887777555788888888888885 777765 467788888888877 65532 11
Q ss_pred cccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCC
Q 045751 278 DCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQF 357 (492)
Q Consensus 278 ~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~l 357 (492)
+..+..+++|+.|++++|. . ..+|. +..+ ..+
T Consensus 98 --------------------~~~f~~l~~L~~L~l~~n~--l-~~lp~-~~~l------------------------~~L 129 (239)
T 2xwt_C 98 --------------------PDALKELPLLKFLGIFNTG--L-KMFPD-LTKV------------------------YST 129 (239)
T ss_dssp --------------------TTSEECCTTCCEEEEEEEC--C-CSCCC-CTTC------------------------CBC
T ss_pred --------------------HHHhCCCCCCCEEeCCCCC--C-ccccc-cccc------------------------ccc
Confidence 1116677778888888872 1 11221 1111 112
Q ss_pred CCCceEEEEecc-cCCCCCcccccCCCccC-eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCcc-cc
Q 045751 358 PPSLTHLSFSNT-ELMEDPMPTLEKLPLLQ-VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAM-PK 433 (492)
Q Consensus 358 p~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~ 433 (492)
+.|++|++++| .+....+..+.++++|+ .|++++|.+.. .....+.. ++|+.|++++|+.++.++. .+..+ ++
T Consensus 130 -~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 130 -DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp -CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred -ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 33458888888 77666666788899999 99999888763 21222333 7899999999866887764 47788 99
Q ss_pred ccEEEEeecCCcCccchhccCCCCCcEEEecCCC
Q 045751 434 LECLIIDPCAYLKRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 434 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
|+.|++++|... .+|.. .+++|+.|++.++.
T Consensus 207 L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 999999998754 56654 68899999998875
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.5e-19 Score=179.13 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=135.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC----CCchhh-------ccccccCEEEccCCCCcc--
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS----QLPSGI-------ENLFFLRYLKLNIPSLKS-- 226 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~----~l~~~~-------~~l~~L~~L~l~~~~i~~-- 226 (492)
+++|++|++++|.+...........+.++++|++|+|++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 7889999999887752111123445778999999999987544 345444 678899999999998885
Q ss_pred ---CchhHHhcCCCccEEecCCCcccc-----hHHHhhcc---------cccccccccccccC-CCCC---ccccCCccc
Q 045751 227 ---LPSSFLSSISNLYTLDMPFSYIHH-----TADVFWEM---------NKLRHLNFGLFTLP-AYPR---NDCGSLENL 285 (492)
Q Consensus 227 ---lp~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l---------~~L~~L~L~~~~~~-~~~p---~~~~~l~~L 285 (492)
+|..+ ..+++|++|++++|.++. ++..+..+ ++|++|++++|.+. ..+| ..+..+++|
T Consensus 111 ~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 66666 889999999999997753 33445555 88999999888875 2233 233345555
Q ss_pred ceeecCCCCc-------cchhhhCCCcccceEEeeeccCcch----hhHHHHhhcCCCCCeEEeecCCCCCCccEEEeec
Q 045751 286 NFISALHPRC-------CTPDILGRLPNLRKLRIHGDLSNNQ----SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDE 354 (492)
Q Consensus 286 ~~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~ 354 (492)
+.|++++..- ..+..+..+++|+.|++++| ... ..++..+..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~~~------------------------ 243 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSW------------------------ 243 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGGGC------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHHccC------------------------
Confidence 5555543111 11212445555555555555 221 3344444444
Q ss_pred CCCCCCceEEEEecccCCCC----Ccccc--cCCCccCeEEEeccccCCCc---ccccC-CCCccccEEeeccc
Q 045751 355 YQFPPSLTHLSFSNTELMED----PMPTL--EKLPLLQVLKLKKNSYLGRK---LTCGS-HGFPKLKVLHLKSM 418 (492)
Q Consensus 355 ~~lp~~L~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~l~~~~~~~~~---~~~~~-~~~~~L~~L~l~~~ 418 (492)
++|++|+|++|.+.+. .+..+ +.+++|+.|++++|.+++.. ++..+ ..+++|++|++++|
T Consensus 244 ----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 244 ----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp ----TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ----CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 4555555555554332 12233 23566666666666554421 12222 34566666666665
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=5.4e-18 Score=162.40 Aligned_cols=206 Identities=17% Similarity=0.179 Sum_probs=160.6
Q ss_pred ecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCC
Q 045751 196 LGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYP 275 (492)
Q Consensus 196 L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~ 275 (492)
+..+.++... ....+++|++|+++++.+..+| .+ ..+++|++|++++|.+..++. +..+++|++|++++|.+.+
T Consensus 26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-- 99 (308)
T 1h6u_A 26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-- 99 (308)
T ss_dssp TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC--
T ss_pred hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC--
Confidence 3344444322 2456889999999999999887 46 899999999999999988887 9999999999999987642
Q ss_pred CccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecC
Q 045751 276 RNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEY 355 (492)
Q Consensus 276 p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~ 355 (492)
++. +..+++|+.|++++|. . ..++ .+..+++|+.|+++++ .+..+. .+.
T Consensus 100 ---------------------~~~-~~~l~~L~~L~l~~n~--l-~~~~-~l~~l~~L~~L~l~~n----~l~~~~-~l~ 148 (308)
T 1h6u_A 100 ---------------------VSA-IAGLQSIKTLDLTSTQ--I-TDVT-PLAGLSNLQVLYLDLN----QITNIS-PLA 148 (308)
T ss_dssp ---------------------CGG-GTTCTTCCEEECTTSC--C-CCCG-GGTTCTTCCEEECCSS----CCCCCG-GGG
T ss_pred ---------------------chh-hcCCCCCCEEECCCCC--C-CCch-hhcCCCCCCEEECCCC----ccCcCc-ccc
Confidence 122 7788899999999983 2 2233 3888999999999852 333222 366
Q ss_pred CCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCcccccc
Q 045751 356 QFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLE 435 (492)
Q Consensus 356 ~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 435 (492)
.+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+... +..+++|+.|++++| .++.++ .+..+++|+
T Consensus 149 ~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 149 GL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNN-QISDVS-PLANTSNLF 220 (308)
T ss_dssp GC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCC
T ss_pred CC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCC-ccCccc-cccCCCCCC
Confidence 77 899999999999865333 8899999999999998876432 678899999999998 677666 378999999
Q ss_pred EEEEeecCCcC
Q 045751 436 CLIIDPCAYLK 446 (492)
Q Consensus 436 ~L~l~~c~~l~ 446 (492)
.|++++|+...
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999998653
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.6e-18 Score=167.75 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=25.2
Q ss_pred EEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcc
Q 045751 194 LDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248 (492)
Q Consensus 194 L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l 248 (492)
++.+++.++.+|..+ .+++++|++++|+|+.+|+..|.++++|++|+|++|.+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 344444444444433 13455555555555555544335555555555555543
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=4.2e-18 Score=161.60 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=121.7
Q ss_pred hccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccc
Q 045751 208 IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLN 286 (492)
Q Consensus 208 ~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 286 (492)
++++++++.++++++.++.+|..+ .++++.|++++|.+..++ ..+..+++|++|++++|.+.+ ++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC---------
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC---------
Confidence 567889999999999999999877 378999999999887774 568899999999999987642 111
Q ss_pred eeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEE
Q 045751 287 FISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSF 366 (492)
Q Consensus 287 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L 366 (492)
.+.+++|+.|++++|. ...+|..+. .+ ++|++|++
T Consensus 73 --------------~~~l~~L~~L~Ls~N~---l~~l~~~~~---------------------------~l-~~L~~L~l 107 (290)
T 1p9a_G 73 --------------DGTLPVLGTLDLSHNQ---LQSLPLLGQ---------------------------TL-PALTVLDV 107 (290)
T ss_dssp --------------CSCCTTCCEEECCSSC---CSSCCCCTT---------------------------TC-TTCCEEEC
T ss_pred --------------CCCCCcCCEEECCCCc---CCcCchhhc---------------------------cC-CCCCEEEC
Confidence 2456667777777762 222222223 33 45555555
Q ss_pred ecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEc-cCccccccEEEEeecCCc
Q 045751 367 SNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMG-TGAMPKLECLIIDPCAYL 445 (492)
Q Consensus 367 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l 445 (492)
++|.++...+..+.++++|+.|++++|.+.... +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|...
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 555554444445555555555555555554321 222345555555555555 44444433 344555555555555432
Q ss_pred CccchhccCCCCCcEEEecCCC
Q 045751 446 KRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 446 ~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+|..+..+++|+.++++++|
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCC
T ss_pred -ccChhhcccccCCeEEeCCCC
Confidence 455555555555555555443
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=7e-19 Score=170.85 Aligned_cols=246 Identities=17% Similarity=0.159 Sum_probs=169.4
Q ss_pred CeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCC-C-CchhhccccccCE
Q 045751 140 MIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-Q-LPSGIENLFFLRY 216 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~-l~~~~~~l~~L~~ 216 (492)
..+++.+..+.........+ .++++.|++.++.+.. . ...+.++++|++|++++|.++ . ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~----~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ----P-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS----C-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccc----c-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 46677776443331111111 4899999999988762 1 222567999999999999988 3 8888999999999
Q ss_pred EEccCCCCc-cCchhHHhcCCCccEEecCCC-ccc--chHHHhhccccccccccccc-ccCCCCCccccCCcccceeecC
Q 045751 217 LKLNIPSLK-SLPSSFLSSISNLYTLDMPFS-YIH--HTADVFWEMNKLRHLNFGLF-TLPAYPRNDCGSLENLNFISAL 291 (492)
Q Consensus 217 L~l~~~~i~-~lp~~~~~~l~~L~~L~L~~~-~l~--~lp~~~~~l~~L~~L~L~~~-~~~~~~p~~~~~l~~L~~l~~~ 291 (492)
|++++|.+. ..+..+ +.+++|++|++++| .++ .++..+..+++|++|++++| .+.+.
T Consensus 123 L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~----------------- 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----------------- 184 (336)
T ss_dssp EECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----------------
T ss_pred EeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----------------
Confidence 999999988 667777 89999999999999 676 47888999999999999999 65321
Q ss_pred CCCccchhhhCCCc-ccceEEeeecc-CcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEec
Q 045751 292 HPRCCTPDILGRLP-NLRKLRIHGDL-SNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSN 368 (492)
Q Consensus 292 ~~~~~~~~~l~~l~-~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~ 368 (492)
.++..+..++ +|++|++++|. ......++..+..+++|+.|++++ +..+..-.+ .+..+ ++|++|++++
T Consensus 185 ----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~l-~~L~~L~l~~ 256 (336)
T 2ast_B 185 ----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFQL-NYLQHLSLSR 256 (336)
T ss_dssp ----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGGGGGGC-TTCCEEECTT
T ss_pred ----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHHHHhCC-CCCCEeeCCC
Confidence 1112256667 77777777763 122256677777788888888874 322221111 45667 8888888888
Q ss_pred cc-CCCCCcccccCCCccCeEEEeccccCCCcccccCCCC-ccccEEeecccCCcc
Q 045751 369 TE-LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGF-PKLKVLHLKSMLWLE 422 (492)
Q Consensus 369 ~~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~ 422 (492)
|. +.......++++++|+.|++++| +....+. .+ .+++.|++++| .++
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~----~l~~~l~~L~l~~n-~l~ 306 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ----LLKEALPHLQINCS-HFT 306 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH----HHHHHSTTSEESCC-CSC
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH----HHHhhCcceEEecc-cCc
Confidence 85 33333345778888999998877 4433221 22 23555567766 444
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.4e-18 Score=160.27 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred cEEEEEecCCcCCCCch-hhccccccCEEEccCCC-CccCchhHHhcCCCccEEecCC-CcccchHH-Hhhccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPS-LKSLPSSFLSSISNLYTLDMPF-SYIHHTAD-VFWEMNKLRHLN 265 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~-i~~lp~~~~~~l~~L~~L~L~~-~~l~~lp~-~~~~l~~L~~L~ 265 (492)
+|++|++++|.++.+|. .+..+++|++|++++|. ++.++...|.++++|++|++++ |.++.+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554432 44555555555555554 5555443335555555555555 45544442 244555555555
Q ss_pred cccccc
Q 045751 266 FGLFTL 271 (492)
Q Consensus 266 L~~~~~ 271 (492)
+++|.+
T Consensus 112 l~~n~l 117 (239)
T 2xwt_C 112 IFNTGL 117 (239)
T ss_dssp EEEECC
T ss_pred CCCCCC
Confidence 555544
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.9e-18 Score=169.53 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHhccCCcEEEEEecCCcCCCCc-----hhhcccc-ccCEEEccCCCCccCchhHHhcC-----CCccEEecCCCccc
Q 045751 181 CEKICKMFKFLRVLDLGSLVLSQLP-----SGIENLF-FLRYLKLNIPSLKSLPSSFLSSI-----SNLYTLDMPFSYIH 249 (492)
Q Consensus 181 ~~~~~~~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~l~~~~i~~lp~~~~~~l-----~~L~~L~L~~~~l~ 249 (492)
.+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+.......|..+ ++|++|++++|.++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3344444444555555555555332 3444455 55555555555553322111332 55555555555443
Q ss_pred chH-HH----hhcc-cccccccccccccC
Q 045751 250 HTA-DV----FWEM-NKLRHLNFGLFTLP 272 (492)
Q Consensus 250 ~lp-~~----~~~l-~~L~~L~L~~~~~~ 272 (492)
..+ .. +..+ ++|++|++++|.+.
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 322 21 2222 45555555555543
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=4.7e-19 Score=173.94 Aligned_cols=248 Identities=13% Similarity=0.088 Sum_probs=140.4
Q ss_pred EEEecCCcCC-CCchhhccccccCEEEccCCCCccCch----hHHhcCC-CccEEecCCCcccch-HHHhhcc-----cc
Q 045751 193 VLDLGSLVLS-QLPSGIENLFFLRYLKLNIPSLKSLPS----SFLSSIS-NLYTLDMPFSYIHHT-ADVFWEM-----NK 260 (492)
Q Consensus 193 ~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~i~~lp~----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~~ 260 (492)
+++++.|.++ .+|..+...++|++|++++|.+...+. ..|..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888888 455655666679999999999997775 4448888 999999999988665 4556665 89
Q ss_pred cccccccccccCCCCCccccC----C-cccceeecCCCC--ccc----hhhhCC-CcccceEEeeecc--CcchhhHHHH
Q 045751 261 LRHLNFGLFTLPAYPRNDCGS----L-ENLNFISALHPR--CCT----PDILGR-LPNLRKLRIHGDL--SNNQSLLSKS 326 (492)
Q Consensus 261 L~~L~L~~~~~~~~~p~~~~~----l-~~L~~l~~~~~~--~~~----~~~l~~-l~~L~~L~l~~~~--~~~~~~~~~~ 326 (492)
|++|++++|.+.+..+..+.. + ++|+.|++++.. ... ...+.. .++|++|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987665554433 3 667777666311 111 111333 2467777776663 1112344555
Q ss_pred hhcCC-CCCeEEeecCCCCCCccEEEe-----ecCCCCCCceEEEEecccCCCCCcc----cccC-CCccCeEEEecccc
Q 045751 327 LYKLS-SLESLKLVNESKMPRLSKIVL-----DEYQFPPSLTHLSFSNTELMEDPMP----TLEK-LPLLQVLKLKKNSY 395 (492)
Q Consensus 327 l~~l~-~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~~----~l~~-l~~L~~L~l~~~~~ 395 (492)
+...+ +|+.|+++++ .+..... .+..+|++|++|++++|.+.+.... .+.. .++|+.|++++|.+
T Consensus 162 l~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 162 LAAIPANVNSLNLRGN----NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HhcCCccccEeeecCC----CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 55554 5666666531 1211110 1223323566666666655443222 2222 23566666665555
Q ss_pred CCCcc---cccCCCCccccEEeecccC--C-----cceEEEccCccccccEEEEeecCC
Q 045751 396 LGRKL---TCGSHGFPKLKVLHLKSML--W-----LEEWTMGTGAMPKLECLIIDPCAY 444 (492)
Q Consensus 396 ~~~~~---~~~~~~~~~L~~L~l~~~~--~-----l~~l~~~~~~l~~L~~L~l~~c~~ 444 (492)
.+... ...+..+++|+.|++++|. . +..++..+..+++|+.|++++|+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 54321 2223455556666665552 0 112222344555555555555553
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=163.42 Aligned_cols=228 Identities=16% Similarity=0.104 Sum_probs=130.9
Q ss_pred CCCeeEEEeecCCCCCCCchhHHH--HhccCCcEEEEEecCCcCC-CCchhh--ccccccCEEEccCCCCcc-Cc----h
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEK--ICKMFKFLRVLDLGSLVLS-QLPSGI--ENLFFLRYLKLNIPSLKS-LP----S 229 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~l~~~~i~~-lp----~ 229 (492)
...++.+.+.+.... ...... .+..+++|++|++++|.++ ..|..+ ..+++|++|++++|.+.. .+ .
T Consensus 63 ~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 445667777666553 111111 1223456888888888776 555555 777888888888887773 22 2
Q ss_pred hHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCC--CCccccCCcccceeecCCCCccchhhhCCCcc
Q 045751 230 SFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAY--PRNDCGSLENLNFISALHPRCCTPDILGRLPN 306 (492)
Q Consensus 230 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~ 306 (492)
.+ ..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+. ++. ...++.+++
T Consensus 140 ~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------~~~~~~l~~ 198 (310)
T 4glp_A 140 QQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA--------------------ALCPHKFPA 198 (310)
T ss_dssp HT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT--------------------TSCTTSSCC
T ss_pred Hh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH--------------------HHhhhcCCC
Confidence 22 45777777777777766554 3466777777777777764321 110 000356677
Q ss_pred cceEEeeeccCcchhhHHHH-hhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccCC---
Q 045751 307 LRKLRIHGDLSNNQSLLSKS-LYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKL--- 382 (492)
Q Consensus 307 L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l--- 382 (492)
|++|++++|.-......+.. ++.+ ++|++|++++|.+.+..|..++.+
T Consensus 199 L~~L~Ls~N~l~~l~~~~~~l~~~l----------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 199 IQNLALRNTGMETPTGVCAALAAAG----------------------------VQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCSCBCCSSCCCCHHHHHHHHHHHT----------------------------CCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCCchHHHHHHHHhcC----------------------------CCCCEEECCCCCCCccchhhHHhccCc
Confidence 88888887731111222222 2333 455555566666655545555444
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccccEEEEeecCCc
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKLECLIIDPCAYL 445 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 445 (492)
++|+.|++++|.++.. +... +++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus 251 ~~L~~L~Ls~N~l~~l--p~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQV--PKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSC--CSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCch--hhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCCC
Confidence 5777777777766521 2222 366777777766 5555543 456666666666666543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=8.1e-17 Score=154.43 Aligned_cols=224 Identities=14% Similarity=0.060 Sum_probs=141.7
Q ss_pred CCeeEEEEecCCCCcccc----ccc-CCCeeEEEeecCCCCCCCchhHHHHh--ccCCcEEEEEecCCcCCC-Cc----h
Q 045751 139 KMIKRLTANVNLSELDSL----EDF-NLYLHSLLCLSSESHHLDPLDCEKIC--KMFKFLRVLDLGSLVLSQ-LP----S 206 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~l~~-l~----~ 206 (492)
.+++++.+.......... ... .++|+.|++++|.... ..+..+ .++++|++|++++|.++. .+ .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 357778877433322111 112 6779999999988752 333344 788999999999998873 22 3
Q ss_pred hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc---hHHH--hhcccccccccccccccCCCCCccccC
Q 045751 207 GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH---TADV--FWEMNKLRHLNFGLFTLPAYPRNDCGS 281 (492)
Q Consensus 207 ~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~---lp~~--~~~l~~L~~L~L~~~~~~~~~p~~~~~ 281 (492)
.+..+++|++|++++|.+..++...|+.+++|++|++++|.+.. ++.. +..+++|++|++++|.+.. ++.
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~---- 214 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG---- 214 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH----
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH----
Confidence 44578899999999999987776555899999999999997643 4332 3678899999999987631 111
Q ss_pred CcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCc
Q 045751 282 LENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSL 361 (492)
Q Consensus 282 l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L 361 (492)
.....++.+++|++|++++| ......|..+..+ ..+ ++|
T Consensus 215 --------------~~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~------------------------~~~-~~L 253 (310)
T 4glp_A 215 --------------VCAALAAAGVQPHSLDLSHN--SLRATVNPSAPRC------------------------MWS-SAL 253 (310)
T ss_dssp --------------HHHHHHHHTCCCSSEECTTS--CCCCCCCSCCSSC------------------------CCC-TTC
T ss_pred --------------HHHHHHhcCCCCCEEECCCC--CCCccchhhHHhc------------------------cCc-CcC
Confidence 11111456777888888887 2222223222222 112 466
Q ss_pred eEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751 362 THLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM 418 (492)
Q Consensus 362 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (492)
++|++++|.+. ..|..+. ++|+.|++++|.+++.. . ...+++|+.|++++|
T Consensus 254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C-TTSCCCCSCEECSST
T ss_pred CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h-hhhCCCccEEECcCC
Confidence 66666666664 3344332 66777777777666431 1 456677777777776
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.8e-17 Score=160.45 Aligned_cols=217 Identities=12% Similarity=0.076 Sum_probs=133.8
Q ss_pred CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCc-cCchhHHhcCCCccE-EecCCCcccchH-HHhhcccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLK-SLPSSFLSSISNLYT-LDMPFSYIHHTA-DVFWEMNKLRHL 264 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~-~lp~~~~~~l~~L~~-L~L~~~~l~~lp-~~~~~l~~L~~L 264 (492)
+++++|+|++|.|+.+|. .|.++++|++|++++|.+. .+|...|.++++++. +.+++|++..++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 567888888888887774 5788888888888888875 577666677877665 455556777774 447778888888
Q ss_pred cccccccCCCCCccccCCcccceeecCC---CCccchhhhCCCc-ccceEEeeeccCcchhhHHHHhhcCCCCCeEEeec
Q 045751 265 NFGLFTLPAYPRNDCGSLENLNFISALH---PRCCTPDILGRLP-NLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVN 340 (492)
Q Consensus 265 ~L~~~~~~~~~p~~~~~l~~L~~l~~~~---~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 340 (492)
++++|.+....+..+....++..+++.+ ........+..+. .++.|++++|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N------------------------- 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------------------------- 164 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-------------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-------------------------
Confidence 8888877543333333333333333321 1111111122222 3444444444
Q ss_pred CCCCCCccEEEeecCCCCCCceEEEEec-ccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccC
Q 045751 341 ESKMPRLSKIVLDEYQFPPSLTHLSFSN-TELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSML 419 (492)
Q Consensus 341 ~~~~~~L~~L~l~~~~lp~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 419 (492)
+++.+.-..... .+|++|.+.+ |.+.......|.++++|+.|++++|.++... .+.+.+|+.|.+.++.
T Consensus 165 -----~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 -----GIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTY 234 (350)
T ss_dssp -----CCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCT
T ss_pred -----cccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----hhhhccchHhhhccCC
Confidence 222221122223 5677777765 4444444456788888888888888776432 2457778888877777
Q ss_pred CcceEEEccCccccccEEEEee
Q 045751 420 WLEEWTMGTGAMPKLECLIIDP 441 (492)
Q Consensus 420 ~l~~l~~~~~~l~~L~~L~l~~ 441 (492)
.++.+|. +..+++|+.+++.+
T Consensus 235 ~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCC-TTTCCSCCEEECSC
T ss_pred CcCcCCC-chhCcChhhCcCCC
Confidence 7887774 77788888888764
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.7e-16 Score=145.97 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=55.3
Q ss_pred cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGL 268 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~ 268 (492)
..++++++++.++.+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+..++.. +..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45567777777777776554 4677777777777766654447777777777777776665433 66777777777777
Q ss_pred cccC
Q 045751 269 FTLP 272 (492)
Q Consensus 269 ~~~~ 272 (492)
|.+.
T Consensus 93 n~l~ 96 (251)
T 3m19_A 93 NQLA 96 (251)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 7664
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=9.7e-16 Score=145.35 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=104.3
Q ss_pred cCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccc
Q 045751 187 MFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNF 266 (492)
Q Consensus 187 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L 266 (492)
.+++|++|++++|.++.++. +..+++|++|++++|.+..++. + .++++|++|++++|.+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 45566666666666665543 5666666666666666666655 4 666666666666666666554 666666666666
Q ss_pred cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751 267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR 346 (492)
Q Consensus 267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 346 (492)
++|.+.+ ++. +..+++|+.|++++|. ...
T Consensus 120 ~~n~i~~-----------------------~~~-l~~l~~L~~L~l~~n~--l~~------------------------- 148 (291)
T 1h6t_A 120 EHNGISD-----------------------ING-LVHLPQLESLYLGNNK--ITD------------------------- 148 (291)
T ss_dssp TTSCCCC-----------------------CGG-GGGCTTCCEEECCSSC--CCC-------------------------
T ss_pred CCCcCCC-----------------------Chh-hcCCCCCCEEEccCCc--CCc-------------------------
Confidence 6665421 112 5556666666666651 110
Q ss_pred ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM 418 (492)
Q Consensus 347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (492)
+. .+..+ ++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|
T Consensus 149 ~~----~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 149 IT----VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CG----GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEEEEEE
T ss_pred ch----hhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--h-hhccCCCCCEEECcCC
Confidence 00 34455 778888888888755433 77788888888888777653 2 2567778888888877
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=6.3e-16 Score=143.43 Aligned_cols=170 Identities=19% Similarity=0.178 Sum_probs=120.7
Q ss_pred eeEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751 141 IKRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL 219 (492)
Q Consensus 141 ~r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l 219 (492)
.+++.+..+....++ ..+.++++.|++++|.+.. ..+..|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 16 ~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCCccccC-CCCCCCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345566544444444 3336788888888888762 44556788888888888888888554 45788888888888
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCC--CCcc
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCC 296 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~ 296 (492)
++|.+..+|...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++ ....
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888888877668888888888888888877765 57788888888888887655444566666666666653 2233
Q ss_pred chhhhCCCcccceEEeeec
Q 045751 297 TPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 297 ~~~~l~~l~~L~~L~l~~~ 315 (492)
++..+..+++|+.|++++|
T Consensus 171 ~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHHhCCCCCCEEEeeCC
Confidence 3333566666666666666
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=5.6e-16 Score=147.01 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=104.7
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|+.|+++++.+.. . ..+..+++|++|++++|.++.++. +..+++|++|++++|.+..+|. + ..+++|+
T Consensus 45 l~~L~~L~l~~~~i~~----~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCC
T ss_pred cCcccEEEccCCCccc----C--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCC
Confidence 8899999999998862 2 347889999999999999998877 9999999999999999999876 5 8999999
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
+|++++|.+..++ .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-----------------------~~-l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-----------------------TV-LSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-----------------------GG-GGGCTTCSEEECCSS
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-----------------------hh-hccCCCCCEEEccCC
Confidence 9999999998885 589999999999999987431 12 667777888888777
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3.7e-16 Score=160.82 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=118.3
Q ss_pred cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~ 269 (492)
+|++|++++|.++.+|..+. ++|++|++++|.++.+| . .+++|++|++++|.++.+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 67777777777777776553 67777777777777777 2 46777777777777777766 444 7777777777
Q ss_pred ccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccE
Q 045751 270 TLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSK 349 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~ 349 (492)
.+.+ +|. .+++|+.|++++|. .. .+|.
T Consensus 131 ~l~~-lp~-------------------------~l~~L~~L~Ls~N~--l~-~lp~------------------------ 157 (571)
T 3cvr_A 131 QLTM-LPE-------------------------LPALLEYINADNNQ--LT-MLPE------------------------ 157 (571)
T ss_dssp CCSC-CCC-------------------------CCTTCCEEECCSSC--CS-CCCC------------------------
T ss_pred cCCC-CCC-------------------------cCccccEEeCCCCc--cC-cCCC------------------------
Confidence 6543 222 23456666666651 11 1110
Q ss_pred EEeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccc-------cEEeecccCCcc
Q 045751 350 IVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKL-------KVLHLKSMLWLE 422 (492)
Q Consensus 350 L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~ 422 (492)
.+ ++|++|++++|.+.+ .+. +. ++|+.|++++|.++.. +. +.. +| +.|++++| .++
T Consensus 158 ------~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l--p~-~~~--~L~~~~~~L~~L~Ls~N-~l~ 220 (571)
T 3cvr_A 158 ------LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL--PA-VPV--RNHHSEETEIFFRCREN-RIT 220 (571)
T ss_dssp ------CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC--CC-CC----------CCEEEECCSS-CCC
T ss_pred ------cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch--hh-HHH--hhhcccccceEEecCCC-cce
Confidence 12 567777777777654 333 44 7777777777776632 22 222 55 88888877 667
Q ss_pred eEEEccCccccccEEEEeecCCcCccchhccCC
Q 045751 423 EWTMGTGAMPKLECLIIDPCAYLKRLPKQLWSV 455 (492)
Q Consensus 423 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 455 (492)
.+|..+..+++|+.|++++|+..+.+|..+..+
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 777777778888888888887766666655443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1.7e-15 Score=157.57 Aligned_cols=60 Identities=28% Similarity=0.248 Sum_probs=47.4
Q ss_pred ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeeccc
Q 045751 353 DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSM 418 (492)
Q Consensus 353 ~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 418 (492)
.+..+ ++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|
T Consensus 148 ~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 148 VLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSE
T ss_pred hhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCC
Confidence 45566 888999999998865544 88889999999998888753 24677889999999887
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=1e-15 Score=159.24 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=101.0
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|+.|++.++.+.. . ..+..+++|+.|+|++|.++.++. +..+++|++|+|++|.+..+| .+ ..+++|+
T Consensus 42 L~~L~~L~l~~n~i~~----l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~ 112 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLK 112 (605)
T ss_dssp HTTCCCCBCTTCCCCC----C--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCC
T ss_pred CCCCCEEECcCCCCCC----C--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCC
Confidence 6677777777766651 1 246667777777777777776655 667777777777777777665 34 6777777
Q ss_pred EEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcc
Q 045751 240 TLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNN 319 (492)
Q Consensus 240 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 319 (492)
.|+|++|.+..++. +..+++|+.|+|++|.+.+. +. +..+++|+.|++++| ..
T Consensus 113 ~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-----------------------~~-l~~l~~L~~L~Ls~N--~l 165 (605)
T 1m9s_A 113 SLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-----------------------TV-LSRLTKLDTLSLEDN--QI 165 (605)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC-----------------------GG-GGSCTTCSEEECCSS--CC
T ss_pred EEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc-----------------------hh-hcccCCCCEEECcCC--cC
Confidence 77777776666643 66777777777777765321 22 555666666666665 22
Q ss_pred hhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCC
Q 045751 320 QSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMED 374 (492)
Q Consensus 320 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~ 374 (492)
....| +..+++|+.|+|++ ..+..+. .+..+ ++|+.|+|++|.+.+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~----N~i~~l~-~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSK----NHISDLR-ALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCS----SCCCBCG-GGTTC-TTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcC----CCCCCCh-HHccC-CCCCEEEccCCcCcCC
Confidence 22222 45555555555542 1222211 34445 5566666666555443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=2.4e-15 Score=134.04 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=78.3
Q ss_pred ccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCccccee
Q 045751 209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFI 288 (492)
Q Consensus 209 ~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l 288 (492)
..+++|++|++++|.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~---------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN---------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC----------
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh----------
Confidence 44556666666666666655 34 66666666666666555554 3566666666666666554333322
Q ss_pred ecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEec
Q 045751 289 SALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSN 368 (492)
Q Consensus 289 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~ 368 (492)
++.+++|+.|++++| ......+..+..+++|+.|++++ +..+..+. .+..+ ++|++|++++
T Consensus 108 ------------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~---n~~i~~~~-~l~~l-~~L~~L~l~~ 168 (197)
T 4ezg_A 108 ------------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSY---NGAITDIM-PLKTL-PELKSLNIQF 168 (197)
T ss_dssp ------------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCS---CTBCCCCG-GGGGC-SSCCEEECTT
T ss_pred ------------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccC---CCCccccH-hhcCC-CCCCEEECCC
Confidence 444555555555555 33334445555554444444442 11111111 23344 5555555555
Q ss_pred ccCCCCCcccccCCCccCeEEEecccc
Q 045751 369 TELMEDPMPTLEKLPLLQVLKLKKNSY 395 (492)
Q Consensus 369 ~~l~~~~~~~l~~l~~L~~L~l~~~~~ 395 (492)
|.+.+.. .+..+++|+.|++++|.+
T Consensus 169 n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 169 DGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp BCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred CCCcChH--HhccCCCCCEEEeeCccc
Confidence 5553321 455556666666665554
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=7.7e-16 Score=138.54 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=126.0
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccC
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNI 221 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~ 221 (492)
.+....+....++ ....++|+.|+++++.+. ......|.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCccCCC-CCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3344433344443 233678899999988875 2455567888999999999998887764 467889999999999
Q ss_pred CCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhh
Q 045751 222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDI 300 (492)
Q Consensus 222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 300 (492)
|.+..+|...|.++++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+..+++|+.+++++.. -
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~- 160 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----W- 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC----B-
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC----e-
Confidence 999988877668899999999999988887765 6788999999999988865555456667777777776431 1
Q ss_pred hCCCcccceEEeeeccCcchhhHHHHhhcC
Q 045751 301 LGRLPNLRKLRIHGDLSNNQSLLSKSLYKL 330 (492)
Q Consensus 301 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 330 (492)
.+.+++|+.|+++.| ...+.+|..++.+
T Consensus 161 ~~~~~~l~~L~~~~n--~~~g~ip~~~~~l 188 (208)
T 2o6s_A 161 DCTCPGIRYLSEWIN--KHSGVVRNSAGSV 188 (208)
T ss_dssp CCCTTTTHHHHHHHH--HCTTTBBCTTSSB
T ss_pred ecCCCCHHHHHHHHH--hCCceeeccCccc
Confidence 345566777777666 4555555544433
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-15 Score=136.76 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=85.8
Q ss_pred CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L 266 (492)
++|++|++++|.++.++. .+..+++|++|++++|.+..+|...|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 456666666666665443 345666666666666666666655446666666666666666555543 456666666666
Q ss_pred cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCC
Q 045751 267 GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPR 346 (492)
Q Consensus 267 ~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 346 (492)
++|.+.+..+ ..+..+++|+.|++++| ......+..+..+++|+.|+++++.
T Consensus 108 ~~N~l~~~~~----------------------~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~---- 159 (208)
T 2o6s_A 108 NTNQLQSLPD----------------------GVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNP---- 159 (208)
T ss_dssp CSSCCCCCCT----------------------TTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred CCCcCcccCH----------------------hHhccCCcCCEEECCCC--ccceeCHHHhccCCCccEEEecCCC----
Confidence 6665532222 22556666777777766 2222222224444444444444210
Q ss_pred ccEEEeecCCCCCCceEEEEecccCCCCCcccccCCC
Q 045751 347 LSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLP 383 (492)
Q Consensus 347 L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~ 383 (492)
+...+ ++|+.|+++.|.+++..|..++.++
T Consensus 160 ------~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 ------WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 22233 4555555555555555555444433
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=7.7e-15 Score=151.04 Aligned_cols=175 Identities=16% Similarity=0.100 Sum_probs=135.9
Q ss_pred ccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC
Q 045751 213 FLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH 292 (492)
Q Consensus 213 ~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~ 292 (492)
+|+.|++++|.+..+|..+ .++|++|++++|.++.+| ..+++|++|++++|.+.+ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l------------- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-L------------- 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-C-------------
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-h-------------
Confidence 8999999999999998876 378999999999888888 567899999999988754 443 2
Q ss_pred CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCC
Q 045751 293 PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELM 372 (492)
Q Consensus 293 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~ 372 (492)
.. +|+.|++++|. ... +|. .+ ++|+.|++++|.++
T Consensus 119 ---------~~--~L~~L~Ls~N~--l~~-lp~------------------------------~l-~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 119 ---------PA--SLKHLDVDNNQ--LTM-LPE------------------------------LP-ALLEYINADNNQLT 153 (571)
T ss_dssp ---------CT--TCCEEECCSSC--CSC-CCC------------------------------CC-TTCCEEECCSSCCS
T ss_pred ---------hc--CCCEEECCCCc--CCC-CCC------------------------------cC-ccccEEeCCCCccC
Confidence 11 67788888872 111 111 13 78899999999986
Q ss_pred CCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEccCccccc-------cEEEEeecCCc
Q 045751 373 EDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGTGAMPKL-------ECLIIDPCAYL 445 (492)
Q Consensus 373 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L-------~~L~l~~c~~l 445 (492)
+ .+. .+++|+.|++++|.+++. +. +. ++|+.|++++| .++.+|. +.. +| +.|++++|...
T Consensus 154 ~-lp~---~l~~L~~L~Ls~N~L~~l--p~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 154 M-LPE---LPTSLEVLSVRNNQLTFL--PE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSCC--CC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCC
T ss_pred c-CCC---cCCCcCEEECCCCCCCCc--ch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcce
Confidence 5 333 678999999999998773 33 33 89999999998 7888887 543 77 99999999755
Q ss_pred CccchhccCCCCCcEEEecCCC
Q 045751 446 KRLPKQLWSVKRFKKLELWRPQ 467 (492)
Q Consensus 446 ~~lp~~l~~l~~L~~L~l~~c~ 467 (492)
.+|..+..+++|+.|++++|+
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSS
T ss_pred -ecCHHHhcCCCCCEEEeeCCc
Confidence 799988889999999999997
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=3.1e-15 Score=139.61 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred cEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccccccccccc
Q 045751 190 FLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~ 269 (492)
++..++++++.++.++ .+..+++|++|++++|.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 3444455555555444 3455555666666666555555 33 555666666666665555554 555556666666555
Q ss_pred cc
Q 045751 270 TL 271 (492)
Q Consensus 270 ~~ 271 (492)
.+
T Consensus 96 ~l 97 (263)
T 1xeu_A 96 RL 97 (263)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=9.5e-17 Score=165.95 Aligned_cols=206 Identities=16% Similarity=0.131 Sum_probs=123.8
Q ss_pred hcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEE-
Q 045751 233 SSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLR- 311 (492)
Q Consensus 233 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~- 311 (492)
..+++|+.|++++|.++.+|..++++++|+.|++++|.....+|..+ ..++ ....++..++.+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~~~---~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM------RALD---PLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HHHC---TGGGHHHHHHHHHHHHHHCG
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH------Hhcc---cccCCHHHHHHHHhcccCcc
Confidence 45666777777777777777777777777777765543111111000 0000 0111222244444444444
Q ss_pred eeeccC----------cchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCcccccC
Q 045751 312 IHGDLS----------NNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEK 381 (492)
Q Consensus 312 l~~~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~ 381 (492)
++.+.- .....++. ..|+.|++++ ..++.++ .++.+ ++|+.|++++|.+. ..|..+++
T Consensus 417 l~~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~----n~l~~lp-~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 417 MRAAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAH----KDLTVLC-HLEQL-LLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTT----SCCSSCC-CGGGG-TTCCEEECCSSCCC-CCCGGGGG
T ss_pred hhhcccchhhhhhhhcccccccCc-----cCceEEEecC----CCCCCCc-Ccccc-ccCcEeecCccccc-ccchhhhc
Confidence 222200 01111221 2477788774 2344333 36667 78888888888876 66778888
Q ss_pred CCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceE--EEccCccccccEEEEeecCCcCccch---hccCCC
Q 045751 382 LPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEW--TMGTGAMPKLECLIIDPCAYLKRLPK---QLWSVK 456 (492)
Q Consensus 382 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~---~l~~l~ 456 (492)
+++|+.|++++|.+++ ++ .++.+++|+.|++++| .++.+ |..++.+++|+.|++++|+.....|. .+..++
T Consensus 485 l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 LRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp CTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred CCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 8888888888888876 24 5778888888888887 66666 67788888888888888875543221 234477
Q ss_pred CCcEEEe
Q 045751 457 RFKKLEL 463 (492)
Q Consensus 457 ~L~~L~l 463 (492)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8887753
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.2e-14 Score=127.80 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=55.0
Q ss_pred hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCcc-CchhHHhcCCCccEEecCCCcccc-hHHHhhcccccc
Q 045751 185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKS-LPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR 262 (492)
Q Consensus 185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~ 262 (492)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..+ +.+++|++|++++|.+.. .|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 444444444444444433332 34444444444444444442 33333 444444444444444432 333444444444
Q ss_pred cccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeec
Q 045751 263 HLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 263 ~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
+|++++|...+.+| .+..+++|+.+++++ ....++. +..+++|+.|++++|
T Consensus 140 ~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT-GGGCSSCCEEEECBC
T ss_pred EEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH-hccCCCCCEEEeeCc
Confidence 44444444112222 222233333333321 1111122 566666777777666
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=2e-14 Score=131.24 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=99.1
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccC
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNI 221 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~ 221 (492)
.+....+....++ ..+.++|+.|++++|.+. ...+..|.++++|++|+|++|.++.+| ..+..+++|++|++++
T Consensus 23 ~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCRSKRHASVP-AGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEECTTSCCSSCC-SCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeEccCCCcCccC-CCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3444434444444 233688899999988876 244567888899999999999988777 4468888999999999
Q ss_pred CCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCC
Q 045751 222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPA 273 (492)
Q Consensus 222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~ 273 (492)
|.++.+|...|..+++|++|++++|.+..+|..+..+++|++|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 9999888776688999999999999888888888888999999998888753
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=3.4e-15 Score=159.11 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=86.2
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCE
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRY 216 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 216 (492)
..+++++++..+.+...+...+ ...|+.+.+.............+..+..++.|++|+|++|.+..+|..+..+++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 3457777776455554432222 333333333322111000125567788889999999999998888888888899999
Q ss_pred EEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751 217 LKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL 291 (492)
Q Consensus 217 L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~ 291 (492)
|+|++|.|+.+|..+ +++++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+++
T Consensus 252 L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 252 LYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred EEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 999999999888887 8999999999999988888888889999999999988874 666665555555555554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=2.1e-14 Score=130.24 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=91.4
Q ss_pred EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccc
Q 045751 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFT 270 (492)
Q Consensus 192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~ 270 (492)
+.++++++.++.+|..+. ++|+.|++++|.|..++...|..+++|+.|++++|.+..+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777776554 5777778877777777665447777777777777777666 5557777777777777776
Q ss_pred cCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEE
Q 045751 271 LPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKI 350 (492)
Q Consensus 271 ~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L 350 (492)
+. .+|. ..+..+++|+.|++++|. .....+.
T Consensus 92 l~-~l~~---------------------~~f~~l~~L~~L~L~~N~--l~~~~~~------------------------- 122 (220)
T 2v9t_B 92 IT-ELPK---------------------SLFEGLFSLQLLLLNANK--INCLRVD------------------------- 122 (220)
T ss_dssp CC-CCCT---------------------TTTTTCTTCCEEECCSSC--CCCCCTT-------------------------
T ss_pred CC-ccCH---------------------hHccCCCCCCEEECCCCC--CCEeCHH-------------------------
Confidence 53 2221 114455566666666651 1111111
Q ss_pred EeecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccC
Q 045751 351 VLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYL 396 (492)
Q Consensus 351 ~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 396 (492)
.+..+ ++|++|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 123 --~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 123 --AFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp --TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --HcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 23333 55666666666665555555666666666666666543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=2.7e-14 Score=129.46 Aligned_cols=140 Identities=17% Similarity=0.169 Sum_probs=95.8
Q ss_pred EEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEccCC
Q 045751 144 LTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIP 222 (492)
Q Consensus 144 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~ 222 (492)
+....+....++ ..+.++++.|++++|.+. ...+..|..+++|++|+|++|.++.+ |..|..+++|++|++++|
T Consensus 16 v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 16 VDCRGKGLTEIP-TNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EECTTSCCSSCC-SSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEcCCCCcCcCC-CccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 344433344443 223567888888888775 24455677888888888888888744 677888888888888888
Q ss_pred CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCccccee
Q 045751 223 SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFI 288 (492)
Q Consensus 223 ~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l 288 (492)
.++.+|..+|..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 888888777678888888888888777663 457778888888888887754433333333333333
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=128.80 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=78.9
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccC
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNI 221 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~ 221 (492)
.+.+..+....++ ..+.+.++.|++++|.+.. ......|.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 15 ~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555544444443 2234555667777666541 011234566677777777777666444 3566667777777777
Q ss_pred CCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCcccc
Q 045751 222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDCG 280 (492)
Q Consensus 222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~ 280 (492)
|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.+.+..|..+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 777766665446677777777777766555 34466666677777766666544444433
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=3e-16 Score=162.20 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=136.2
Q ss_pred ccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCc--------------ccchHHHhhccccccccc-ccccccCC
Q 045751 209 ENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSY--------------IHHTADVFWEMNKLRHLN-FGLFTLPA 273 (492)
Q Consensus 209 ~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~--------------l~~lp~~~~~l~~L~~L~-L~~~~~~~ 273 (492)
..+++|+.|++++|.++.+|..+ +++++|+.|++++|. ....|..++++++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56788899999999999999998 999999999987763 234456677888888887 555432
Q ss_pred CCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEee
Q 045751 274 YPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVLD 353 (492)
Q Consensus 274 ~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~ 353 (492)
.+|..+.+.+ ..+.. +. ...|+.|++++| ....+|. ++.+++|+.|++++ ..++.++-.
T Consensus 423 ---------~~L~~l~l~~--n~i~~-l~-~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~----N~l~~lp~~ 481 (567)
T 1dce_A 423 ---------DDLRSKFLLE--NSVLK-ME-YADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSH----NRLRALPPA 481 (567)
T ss_dssp ---------HHHHHHHHHH--HHHHH-HH-HTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCS----SCCCCCCGG
T ss_pred ---------chhhhhhhhc--ccccc-cC-ccCceEEEecCC---CCCCCcC-ccccccCcEeecCc----ccccccchh
Confidence 1222222210 00111 11 124677777776 2233454 77777788888774 344444335
Q ss_pred cCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEEcc----C
Q 045751 354 EYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTMGT----G 429 (492)
Q Consensus 354 ~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~ 429 (492)
++.+ ++|++|+|++|.+++ .| .++++++|+.|++++|.+++...+..++.+++|+.|++++| .++.+|... .
T Consensus 482 ~~~l-~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 482 LAAL-RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAE 557 (567)
T ss_dssp GGGC-TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHH
T ss_pred hhcC-CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHH
Confidence 6777 888888888888865 44 78888999999999888876532556778889999999988 566555433 2
Q ss_pred ccccccEEEE
Q 045751 430 AMPKLECLII 439 (492)
Q Consensus 430 ~l~~L~~L~l 439 (492)
.+|+|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 4788888753
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=6.4e-14 Score=127.88 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=47.4
Q ss_pred EEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccccc
Q 045751 193 VLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 193 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~ 271 (492)
.++.+++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 45566666666665443 5666666666666655443336666666666666666666533 45666666666666655
Q ss_pred C
Q 045751 272 P 272 (492)
Q Consensus 272 ~ 272 (492)
.
T Consensus 101 ~ 101 (229)
T 3e6j_A 101 T 101 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.5e-14 Score=141.58 Aligned_cols=175 Identities=21% Similarity=0.304 Sum_probs=84.0
Q ss_pred EEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHh-cCCCccEEecCCCcccchHH-Hhhcccccccccccccc
Q 045751 193 VLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLS-SISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFT 270 (492)
Q Consensus 193 ~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~-~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~ 270 (492)
+++++++.++.+|..+. ..++.|++++|.++.++...|. ++++|++|+|++|.+..++. .+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555555555554332 2355555555555555544434 55555555555555555542 35555555555555555
Q ss_pred cCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCcc
Q 045751 271 LPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLS 348 (492)
Q Consensus 271 ~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~ 348 (492)
+....+..+..+++|+.|++++ .....+..+..+++|+.|++++|. ...+|..+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~------------------- 157 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ---ISRFPVELIK------------------- 157 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCSCCGGGTC-------------------
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc---CCeeCHHHhc-------------------
Confidence 4332222233333333333321 111112225566666666666662 1112211100
Q ss_pred EEEeecCCCCCCceEEEEecccCCCCCcccccCCCc--cCeEEEeccccC
Q 045751 349 KIVLDEYQFPPSLTHLSFSNTELMEDPMPTLEKLPL--LQVLKLKKNSYL 396 (492)
Q Consensus 349 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~l~~~~~~ 396 (492)
.+..+ ++|+.|+|++|.+....+..+..++. ++.|++.+|.+.
T Consensus 158 ----~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 ----DGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --------C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ----CcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 01234 66777777777766555555666665 366777766543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=1.5e-13 Score=132.76 Aligned_cols=280 Identities=13% Similarity=0.028 Sum_probs=162.5
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhcc-CCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhc----
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKM-FKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS---- 234 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~---- 234 (492)
.++++.|.+.++-.. .....+.. +++|++|||++|.+......-+.++.++.+.+..+ .+|...|.+
T Consensus 24 ~~~l~~L~l~g~i~~-----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECH-----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEeccccH-----HHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 567788888765322 22233444 78889999988887611111112222344444443 455555566
Q ss_pred ----CCCccEEecCCCcccchHHH-hhcccccccccccccccCCCCCccccCCcccceeecCCC------CccchhhhCC
Q 045751 235 ----ISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHP------RCCTPDILGR 303 (492)
Q Consensus 235 ----l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~------~~~~~~~l~~ 303 (492)
+++|+.+++.. .++.++.. |..+++|+.+++++|.+....+..+..+.++..+..... .......+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777766 56666543 666777777777766655444444555555554443320 0011111334
Q ss_pred Ccccc-eEEeeeccCcchhhHHHHh----hcCCCCCeEEeecCCCCCCccEEEe-ec-CCCCCCceEEEEecccCCCCCc
Q 045751 304 LPNLR-KLRIHGDLSNNQSLLSKSL----YKLSSLESLKLVNESKMPRLSKIVL-DE-YQFPPSLTHLSFSNTELMEDPM 376 (492)
Q Consensus 304 l~~L~-~L~l~~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~L~~L~l-~~-~~lp~~L~~L~L~~~~l~~~~~ 376 (492)
+..|+ .+.+... ..++..+ ....++..+.+.+ . +..-.. .+ ..+ ++|++|++.+|.+.....
T Consensus 175 ~~~L~~~i~~~~~-----~~l~~~~~~~~~~~~~~~~l~~~~---~--l~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 175 GEPLETTIQVGAM-----GKLEDEIMKAGLQPRDINFLTIEG---K--LDNADFKLIRDYM-PNLVSLDISKTNATTIPD 243 (329)
T ss_dssp SCCCEEEEEECTT-----CCHHHHHHHTTCCGGGCSEEEEEE---C--CCHHHHHHHHHHC-TTCCEEECTTBCCCEECT
T ss_pred ccccceeEEecCC-----CcHHHHHhhcccCccccceEEEee---e--ecHHHHHHHHHhc-CCCeEEECCCCCcceecH
Confidence 45555 3444332 1222222 1234455555542 0 000000 01 125 788888888888766667
Q ss_pred ccccCCCccCeEEEeccccCCCcccccCCCCcccc-EEeecccCCcceEE-EccCccccccEEEEeecCCcCccchhccC
Q 045751 377 PTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLK-VLHLKSMLWLEEWT-MGTGAMPKLECLIIDPCAYLKRLPKQLWS 454 (492)
Q Consensus 377 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~ 454 (492)
..|.++++|+.+++.+| +.. .....+.++++|+ .+.+.+ .++.++ ..+..+++|+.+++.++....--+..+.+
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred hhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 78889999999999876 432 2355578888998 999987 677775 45888999999998877644333347889
Q ss_pred CCCCcEEEe
Q 045751 455 VKRFKKLEL 463 (492)
Q Consensus 455 l~~L~~L~l 463 (492)
+++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999998863
No 118
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.47 E-value=4.8e-15 Score=153.12 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=87.7
Q ss_pred hHHHHHHhhcccCChhhHHHHHhhhcccch-----------------HHHHHHHHhhhcccccccccce-----------
Q 045751 3 SERLRRLLSGEEVTLPDAAKQLAQNLHTEI-----------------EIVTSLLRDYECEIAGHLVNII----------- 54 (492)
Q Consensus 3 ~~~~~~~i~~~~~GlPLa~~~lg~~L~~~~-----------------~i~~~l~~sy~~~l~~~~k~~~----------- 54 (492)
.+.++++|+++|+|+|||++++|+.|+.+. ++.+++.+||+ .+|.++|.||
T Consensus 315 ~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~-~L~~~lk~~f~~Ls~~er~l~ 393 (549)
T 2a5y_B 315 EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYK-SLAMALQRCVEVLSDEDRSAL 393 (549)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSS-SHHHHHHHHHHTSCHHHHHHT
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccc-cccHHHHHHHhccchhhhhHh
Confidence 357899999999999999999999998763 23345577888 4787777664
Q ss_pred ----------eecHHHHHHHHHHh--CCCC--C-C--hHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHH
Q 045751 55 ----------VEEEEMIYQLWIAE--GFIP--D-N--NEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALI 117 (492)
Q Consensus 55 ----------~~~~~~Li~~wia~--gf~~--~-~--~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~ 117 (492)
.|+ +.+|+|+ ||+. . + .+++++ |+++|+++||++....+ ....|+|||++|++|+
T Consensus 394 ~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~ 465 (549)
T 2a5y_B 394 AFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLK 465 (549)
T ss_dssp TGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHH
T ss_pred hheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHH
Confidence 334 8999999 9997 3 3 788888 99999999999987643 3357999999999999
Q ss_pred HHhhccC
Q 045751 118 QVALAGE 124 (492)
Q Consensus 118 ~~~~~~~ 124 (492)
+++.+++
T Consensus 466 ~~~~~~~ 472 (549)
T 2a5y_B 466 HVVDAQT 472 (549)
T ss_dssp TTSCTHH
T ss_pred HHHHHHH
Confidence 8776554
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=126.46 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=56.4
Q ss_pred cEEEEEecCCcCCCCc--hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751 190 FLRVLDLGSLVLSQLP--SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 190 ~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L 266 (492)
.+++|++++|.++.++ ..+..+++|++|++++|.++.++...|.++++|++|++++|.+..++.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3456666666666442 2355666666666666666655553336666666666666666555433 556666666666
Q ss_pred cccccCCCCCccccCCcccceeec
Q 045751 267 GLFTLPAYPRNDCGSLENLNFISA 290 (492)
Q Consensus 267 ~~~~~~~~~p~~~~~l~~L~~l~~ 290 (492)
++|.+.+..|..+..+++|+.|++
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEEC
Confidence 666655444444444444444443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=1.2e-13 Score=128.83 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=42.7
Q ss_pred hccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccc
Q 045751 185 CKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHL 264 (492)
Q Consensus 185 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 264 (492)
+..+++|++|++++|.++.++ .++.+++|++|++++|.+..++. + ..+++|++|++++|.++.+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCc-ccc-CcccEE
Confidence 344455555555555555444 34555555555555555555554 3 555555555555555555443 222 555555
Q ss_pred ccccccc
Q 045751 265 NFGLFTL 271 (492)
Q Consensus 265 ~L~~~~~ 271 (492)
++++|.+
T Consensus 112 ~L~~N~l 118 (263)
T 1xeu_A 112 FLDNNEL 118 (263)
T ss_dssp ECCSSCC
T ss_pred EccCCcc
Confidence 5555544
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=7.8e-14 Score=118.17 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCcc-CchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKS-LPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~~l~~L 238 (492)
.++++.|++++|.+.. ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ ..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 3556666666665430 12233456666666666666666655 556666666666666666665 44443 566666
Q ss_pred cEEecCCCcccchH--HHhhcccccccccccccccC
Q 045751 239 YTLDMPFSYIHHTA--DVFWEMNKLRHLNFGLFTLP 272 (492)
Q Consensus 239 ~~L~L~~~~l~~lp--~~~~~l~~L~~L~L~~~~~~ 272 (492)
++|++++|.++.+| ..++.+++|++|++++|.+.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 66666666666554 44666666666666666654
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.4e-13 Score=116.61 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=103.9
Q ss_pred ccCCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc-hHHHhhcccccc
Q 045751 186 KMFKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLR 262 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~ 262 (492)
...++|+.|++++|.++ .+|..++.+++|++|++++|.+..+ ..+ +.+++|++|++++|.+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 44578999999999998 8898889999999999999999988 555 899999999999999887 888888899999
Q ss_pred cccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH---HHhhcCCCCCeEEee
Q 045751 263 HLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS---KSLYKLSSLESLKLV 339 (492)
Q Consensus 263 ~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~ 339 (492)
+|++++|.+.+. | .+.. ++.+++|+.|++++| ......+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~-~-------------------~~~~-~~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDL-S-------------------TIEP-LKKLENLKSLDLFNC--EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSH-H-------------------HHGG-GGGCTTCCEEECTTC--GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCCh-H-------------------HHHH-HhhCCCCCEEeCcCC--cccchHHHHHHHHHHCCCcccccCC
Confidence 999999987431 1 1122 677788888888887 2333222 467888888888765
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=1.9e-13 Score=133.82 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=123.3
Q ss_pred eEEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCCCc-hhhccccccCEEEc
Q 045751 142 KRLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKL 219 (492)
Q Consensus 142 r~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l 219 (492)
+.+.+..+....++ ..+.+.++.|++++|.+. ......+. ++++|++|+|++|.++.++ ..|..+++|++|++
T Consensus 21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 34555544455544 334667889999998876 34455566 8899999999999988665 56888999999999
Q ss_pred cCCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccCCCCCccc----cCCcccceeecCC--
Q 045751 220 NIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLPAYPRNDC----GSLENLNFISALH-- 292 (492)
Q Consensus 220 ~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~~----~~l~~L~~l~~~~-- 292 (492)
++|.+..++...|..+++|++|+|++|.+..+ |..+..+++|++|+|++|.+.. +|..+ ..+++|+.|++++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence 99999988877668999999999999988777 4568889999999999998854 44443 4577888888764
Q ss_pred CCccchhhhCCCcc--cceEEeeecc
Q 045751 293 PRCCTPDILGRLPN--LRKLRIHGDL 316 (492)
Q Consensus 293 ~~~~~~~~l~~l~~--L~~L~l~~~~ 316 (492)
....+...+..++. ++.|++.+|.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCccCHHHhhhccHhhcceEEecCCC
Confidence 22333333566665 3678887763
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=5.9e-13 Score=115.19 Aligned_cols=126 Identities=18% Similarity=0.044 Sum_probs=95.0
Q ss_pred CCCeeEEEEecCCCC--ccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCC-Cchhhcccc
Q 045751 138 RKMIKRLTANVNLSE--LDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQ-LPSGIENLF 212 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~--~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~ 212 (492)
+.+++++.+..+.+. .++ ..+ +++|+.|++++|.+.. . ..+..+++|++|++++|.++. +|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 457888888766655 343 333 7888888888887752 2 667788888888888888875 677677788
Q ss_pred ccCEEEccCCCCccCc--hhHHhcCCCccEEecCCCcccchHH----Hhhccccccccccccccc
Q 045751 213 FLRYLKLNIPSLKSLP--SSFLSSISNLYTLDMPFSYIHHTAD----VFWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 213 ~L~~L~l~~~~i~~lp--~~~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~L~~~~~ 271 (492)
+|++|++++|.+..+| ..+ ..+++|++|++++|.+..+|. .+..+++|++|++++|..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 8888888888888776 455 788888888888887777765 577888888888888765
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=6.2e-13 Score=115.02 Aligned_cols=82 Identities=21% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCcEEEEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccc-hHHHhhcccccccc
Q 045751 188 FKFLRVLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHH-TADVFWEMNKLRHL 264 (492)
Q Consensus 188 ~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L 264 (492)
.++|++|++++|.++ .+|..+..+++|++|++++|.+..+ ..+ ..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555555554 5555555555555555555555544 333 555555555555555544 44444455555555
Q ss_pred ccccccc
Q 045751 265 NFGLFTL 271 (492)
Q Consensus 265 ~L~~~~~ 271 (492)
++++|.+
T Consensus 101 ~Ls~N~l 107 (168)
T 2ell_A 101 NLSGNKL 107 (168)
T ss_dssp ECBSSSC
T ss_pred eccCCcc
Confidence 5555554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=2.8e-13 Score=118.24 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCcc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLY 239 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~ 239 (492)
+++|+.|++++|.+.. . +......++|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+|..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~----i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV----I-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS----C-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch----h-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 6677777777776651 1 22223334778888888777765 5577777888888888887777766667778888
Q ss_pred EEecCCCcccchHH--HhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 240 TLDMPFSYIHHTAD--VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 240 ~L~L~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
+|++++|.++.+|. .+..+++|++|++++|.+. .+|.. ....+..+++|+.|+++.|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~------------------~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHY------------------RLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTH------------------HHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhH------------------HHHHHHHCCccceeCCCcC
Confidence 88888887777775 5777777888877777653 22221 0011566777778877777
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.9e-14 Score=151.97 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=96.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEE-----ecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLD-----LGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSS 234 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~-----L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~ 234 (492)
.++++.|.+.++... ..+..+.....|+.+. +..+.+...+..+..+.+|+.|+|++|.+..+|..+ .+
T Consensus 172 ~~~~~~l~L~~n~~~-----~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKD-----EANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GG
T ss_pred CCccceEEeeCCCCC-----cchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cC
Confidence 567888888877765 2222222233333333 333444455677889999999999999999999999 79
Q ss_pred CCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEe
Q 045751 235 ISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRI 312 (492)
Q Consensus 235 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l 312 (492)
+++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++.+++|+.|++++ ....+.. ++.+++|+.|++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeC
Confidence 99999999999999999999999999999999999987 7888888888888888874 3344445 788888888888
Q ss_pred eeccCcchhhHHHHhh
Q 045751 313 HGDLSNNQSLLSKSLY 328 (492)
Q Consensus 313 ~~~~~~~~~~~~~~l~ 328 (492)
++| ...+..|..+.
T Consensus 324 ~~N--~l~~~~p~~~~ 337 (727)
T 4b8c_D 324 EGN--PLEKQFLKILT 337 (727)
T ss_dssp TTS--CCCSHHHHHHH
T ss_pred CCC--ccCCCChHHHh
Confidence 887 45556666554
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.2e-13 Score=123.02 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred HHHhccCCcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhccccc
Q 045751 182 EKICKMFKFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKL 261 (492)
Q Consensus 182 ~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L 261 (492)
+..+.++++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+ ..+++|++|++++|.+..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 447778888888888888888877 7888888888888888888888766 77888888888888888877 58888888
Q ss_pred ccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHH----------HHhhcCC
Q 045751 262 RHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLS----------KSLYKLS 331 (492)
Q Consensus 262 ~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~ 331 (492)
++|++++|.+... + .+.. +..+++|+.|++++| ......| ..+..++
T Consensus 118 ~~L~l~~N~i~~~-~-------------------~~~~-l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 118 RVLYMSNNKITNW-G-------------------EIDK-LAALDKLEDLLLAGN--PLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp SEEEESEEECCCH-H-------------------HHHH-HTTTTTCSEEEECSC--HHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CEEECCCCcCCch-h-------------------HHHH-HhcCCCCCEEEecCC--ccccccccccchHHHHHHHHHhCC
Confidence 8888888876321 0 1123 777888888888887 3333332 2366677
Q ss_pred CCCeEE
Q 045751 332 SLESLK 337 (492)
Q Consensus 332 ~L~~L~ 337 (492)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 776665
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.9e-12 Score=112.90 Aligned_cols=127 Identities=15% Similarity=0.092 Sum_probs=109.0
Q ss_pred CCCCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhh-ccccc
Q 045751 137 SRKMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGI-ENLFF 213 (492)
Q Consensus 137 ~~~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~ 213 (492)
...+++.+.+..+.+..++ ... .++|+.|++++|.+.. . ..+..+++|++|++++|.++.+|..+ ..+++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~----~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK----L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE----E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc----c--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3568899999977777663 222 5699999999999862 2 67899999999999999999887554 89999
Q ss_pred cCEEEccCCCCccCch--hHHhcCCCccEEecCCCcccchHHH----hhccccccccccccccc
Q 045751 214 LRYLKLNIPSLKSLPS--SFLSSISNLYTLDMPFSYIHHTADV----FWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 214 L~~L~l~~~~i~~lp~--~~~~~l~~L~~L~L~~~~l~~lp~~----~~~l~~L~~L~L~~~~~ 271 (492)
|++|++++|.+..+|. .+ ..+++|++|++++|.+..+|.. +..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999999987 66 8999999999999999888875 89999999999998865
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=6.5e-12 Score=111.20 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=47.3
Q ss_pred CcEEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFG 267 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~ 267 (492)
++|++|++++|.++.+|..+..+++|++|++++|.|+.++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 34555666666555555555555566666666665555554444555666666666655555543 35555555555555
Q ss_pred ccccC
Q 045751 268 LFTLP 272 (492)
Q Consensus 268 ~~~~~ 272 (492)
+|.+.
T Consensus 111 ~N~l~ 115 (193)
T 2wfh_A 111 GNDIS 115 (193)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 55543
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=3.6e-12 Score=112.77 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=55.2
Q ss_pred EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchh-HHhcCCCccEEecCCCcccch-HHHhhccccccccccccc
Q 045751 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSS-FLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~ 269 (492)
++++++++.++.+|..+.. +|++|++++|.+..++.. +|+.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3445555555555543322 455555555555544432 125555555555555555444 334555555555555555
Q ss_pred ccCCCCCccccCCcccceeecCC--CCccchhhhCCCcccceEEeeec
Q 045751 270 TLPAYPRNDCGSLENLNFISALH--PRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
.+.+..|..+..+++|+.|++++ .....+..+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 54433333333333333333332 11111111444555555555554
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=113.17 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=54.5
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
.++|++|++++|.+. ..+..|.++++|++|+|++|.++.++ ..|..+++|++|++++|.+..++...|..+++|
T Consensus 30 ~~~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 445555555555543 12234555555555555555555433 335555555555555555555544433555555
Q ss_pred cEEecCCCcccchHHH-hhccccccccccccccc
Q 045751 239 YTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~ 271 (492)
++|++++|.+..+|.. +..+++|+.|++++|.+
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555555555555432 44455555555555543
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=2.1e-12 Score=114.36 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=62.0
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHH-HHhccCCcEEEEEecCCcCCCC-chhhccccccCEEEcc
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCE-KICKMFKFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLN 220 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~ 220 (492)
.+.+..+....++ ..+.+++++|++++|.+.. ..+ ..|..+++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 12 ~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTGRGLKEIP-RDIPLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTTSCCSSCC-SCCCTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3444433343333 2223355555555555431 111 1245555555555555555533 4455555555555555
Q ss_pred CCCCccCchhHHhcCCCccEEecCCCcccch-HHHhhcccccccccccccccC
Q 045751 221 IPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADVFWEMNKLRHLNFGLFTLP 272 (492)
Q Consensus 221 ~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~ 272 (492)
+|.++.++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555544444335555555555555555443 334555555555555555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.8e-12 Score=111.09 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=88.0
Q ss_pred EEEEecCCCCcccccccCCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccCEEEccC
Q 045751 143 RLTANVNLSELDSLEDFNLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNI 221 (492)
Q Consensus 143 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~ 221 (492)
.+.+..+....++ ..+.++|++|++++|.+. ......+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 11 ~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCNSKGLTSVP-TGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEECCSSCCSSCC-TTCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCCccCC-CCCCCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4444434444443 223567888888877765 2444556777888888888888776664 357778888888888
Q ss_pred CCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccCCC
Q 045751 222 PSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLPAY 274 (492)
Q Consensus 222 ~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~~~ 274 (492)
|.++.+|...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 888877776557788888888888877777655 46677888888887776543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=6.4e-11 Score=117.00 Aligned_cols=261 Identities=11% Similarity=0.068 Sum_probs=158.5
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
+..++++.+..+... +...+|.++ +|+.+.+..+ ++.++ .+|..+ +|+.+.+.. .+..++...|.+|.+|
T Consensus 112 ~~~l~~i~ip~~i~~-----I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVKS-----IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCCE-----ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccCE-----ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 456666666554322 445566664 5777777665 55444 344443 577777765 6667776666777777
Q ss_pred cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCc
Q 045751 239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSN 318 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 318 (492)
+.++++.|.+..++.......+|+.+.+..+ +...-... +.++++|+.+.+..+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~a----------------------F~~~~~L~~l~l~~~--- 236 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQA----------------------FLKTSQLKTIEIPEN--- 236 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTT----------------------TTTCTTCCCEECCTT---
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhH----------------------hhCCCCCCEEecCCC---
Confidence 7777777777777655444566766665432 21111122 445555555555432
Q ss_pred chhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCC-----CCCcccccCCCccCeEEEec
Q 045751 319 NQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELM-----EDPMPTLEKLPLLQVLKLKK 392 (492)
Q Consensus 319 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~l~~ 392 (492)
....-..++.+ .+|+.+.+. .+++.+.- .+.+| ++|+.+.+.++.+. ......|.++++|+.+.+.
T Consensus 237 l~~I~~~aF~~-~~L~~i~lp-----~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 237 VSTIGQEAFRE-SGITTVKLP-----NGVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp CCEECTTTTTT-CCCSEEEEE-----TTCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred ccCcccccccc-CCccEEEeC-----CCccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 11111122333 456666654 23333322 56677 78888888877653 2344577899999999998
Q ss_pred cccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccchhccCCC-CCcEEEecCCC
Q 045751 393 NSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLPKQLWSVK-RFKKLELWRPQ 467 (492)
Q Consensus 393 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 467 (492)
+.+... -...+.++++|+.+.|.. +++.+.. .+..+ +|+.+.+.++......+..+..++ +++.|.+-...
T Consensus 309 ~~i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 ESIRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTCCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CceEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 444332 245577889999999976 4666653 47788 999999998865443344566664 78888886644
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=6.5e-11 Score=116.95 Aligned_cols=259 Identities=11% Similarity=0.070 Sum_probs=154.7
Q ss_pred CCCeeEEEEecCCCCccccccc-CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751 138 RKMIKRLTANVNLSELDSLEDF-NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR 215 (492)
Q Consensus 138 ~~~~r~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~ 215 (492)
...+..+.+. +....+...+| ..+|+++.+..+-. .+...+|.++ .|+.+.+.+ .++.++ .+|..|.+|+
T Consensus 112 ~~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEGLK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECC-TTCCEECTTTTTTCCCSEEECCTTCC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEEC-CccCEehHhhcccCCccEEEeCCCcc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 3566777777 77777777777 55899999877632 2555677775 699999986 566555 6788999999
Q ss_pred EEEccCCCCccCchhHHhcCCCccEEecCCCcccchHH-HhhcccccccccccccccCCCCCccccCCcccceeecCC-C
Q 045751 216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-P 293 (492)
Q Consensus 216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~ 293 (492)
.+++..+.+..++...|. +.+|+.+.+..+ +..++. .|.++++|+.+++..+ +...-...+.. .+|+.+.+.+ .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i 259 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGV 259 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTC
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCc
Confidence 999999999999998866 689999999855 666654 4888999999988754 21111222222 4555555543 2
Q ss_pred CccchhhhCCCcccceEEeeeccCc--ch-hhHHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEeccc
Q 045751 294 RCCTPDILGRLPNLRKLRIHGDLSN--NQ-SLLSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTE 370 (492)
Q Consensus 294 ~~~~~~~l~~l~~L~~L~l~~~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~ 370 (492)
......++.+|++|+.+.+.++... .. ..-...+. .| ++|+.+.+.. .
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------------------------~c-~~L~~l~l~~-~ 310 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------------------------GC-PKLARFEIPE-S 310 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------------------------TC-TTCCEECCCT-T
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------------------------CC-ccCCeEEeCC-c
Confidence 2222333566666666666554100 00 01122333 44 4455554442 2
Q ss_pred CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCccc-cccEEEEee
Q 045751 371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMP-KLECLIIDP 441 (492)
Q Consensus 371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~-~L~~L~l~~ 441 (492)
+.......|.++++|+.+.+..+ ++.. -...+.++ +|+.+.+.++ .+..++ ..+..++ +++.|.+-.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 23333345556666666666432 2211 12334555 6666666665 333332 2234443 455666554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=1.7e-13 Score=122.03 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=73.4
Q ss_pred hccCCcEEEEEecCCcC-------CCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhc
Q 045751 185 CKMFKFLRVLDLGSLVL-------SQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWE 257 (492)
Q Consensus 185 ~~~~~~L~~L~L~~~~l-------~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~ 257 (492)
+.....++.++++++.+ +.+|..++.+++|++|++++|.+..+| .+ .++++|++|++++|.+..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhc
Confidence 44444544444444443 344457788888888888888888777 55 7888888888888877777777777
Q ss_pred ccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeec
Q 045751 258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGD 315 (492)
Q Consensus 258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 315 (492)
+++|++|++++|.+.+ ++. +..+++|+.|++++|
T Consensus 92 ~~~L~~L~L~~N~l~~-----------------------l~~-~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-----------------------LSG-IEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHHCSEEEEEEEECCC-----------------------HHH-HHHHHHSSEEEESEE
T ss_pred CCcCCEEECcCCcCCc-----------------------CCc-cccCCCCCEEECCCC
Confidence 7888888888877532 122 666777888888887
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=2.8e-11 Score=105.53 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=51.2
Q ss_pred CcEEEEEecCCcCCCCch-hhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751 189 KFLRVLDLGSLVLSQLPS-GIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L 266 (492)
++|++|++++|.++.+|. .+..+++|++|++++|.+..+|...|..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666665543 345666666666666666666655446666666666666666555543 455666666666
Q ss_pred cccccC
Q 045751 267 GLFTLP 272 (492)
Q Consensus 267 ~~~~~~ 272 (492)
++|.+.
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 666553
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=5.4e-12 Score=121.78 Aligned_cols=280 Identities=12% Similarity=-0.009 Sum_probs=172.3
Q ss_pred CeeEEEEecCCCCccccccc---CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCchhhcc------
Q 045751 140 MIKRLTANVNLSELDSLEDF---NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPSGIEN------ 210 (492)
Q Consensus 140 ~~r~lsl~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~------ 210 (492)
++++|.+. +.+.......+ +++|++|++++|.+.. .......++.++.+.+..+.+. +..|..
T Consensus 26 ~l~~L~l~-g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~-----~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 26 SITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKM-----YSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HCSEEEEE-EEECHHHHHHHHHSCTTCCEEEEEEEEECC-----EEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred ceeEEEEe-ccccHHHHHHHHHhhccCeEEecCcceeEE-----ecCccccccccccccccccccC--HHHhcccccccc
Confidence 46777776 32222111222 5789999999887651 0001112222444555554332 134555
Q ss_pred --ccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccc----cCCCCCccccCCc
Q 045751 211 --LFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFT----LPAYPRNDCGSLE 283 (492)
Q Consensus 211 --l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~----~~~~~p~~~~~l~ 283 (492)
|++|+.+.+.. .++.+++..|.+|++|+.+++++|.+..++.. |..+.++..+...... ....-...+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888887 78888887778888888888888877666543 5566666666544321 1111112233344
Q ss_pred ccc-eeecCCCCccchhh---hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCC
Q 045751 284 NLN-FISALHPRCCTPDI---LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFP 358 (492)
Q Consensus 284 ~L~-~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp 358 (492)
.|+ .+.+.......... .....++..+.+.+. ............+++|+.++++. .+++.+.- .+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~----n~i~~I~~~aF~~~- 249 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISK----TNATTIPDFTFAQK- 249 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTT----BCCCEECTTTTTTC-
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCC----CCcceecHhhhhCC-
Confidence 554 33333222222211 123567778888776 22233333333489999999973 34665543 57788
Q ss_pred CCceEEEEecccCCCCCcccccCCCccC-eEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccE
Q 045751 359 PSLTHLSFSNTELMEDPMPTLEKLPLLQ-VLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLEC 436 (492)
Q Consensus 359 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~ 436 (492)
.+|++|++.++ +.......|.++++|+ .+.+.+ .++.. -...+.++++|+.+++.++ .++.++. .+..+++|+.
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhh
Confidence 89999999987 6566677889999999 999985 44432 2456889999999999876 7888865 5888999998
Q ss_pred EEE
Q 045751 437 LII 439 (492)
Q Consensus 437 L~l 439 (492)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 863
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=3.2e-11 Score=104.78 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=45.1
Q ss_pred CcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751 189 KFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L 266 (492)
++|++|+|++|.++.+ |..+..+++|++|++++|.+..+|..+|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4555555555555543 34455555555555555555555555445555555555555555555543 555555555555
Q ss_pred ccccc
Q 045751 267 GLFTL 271 (492)
Q Consensus 267 ~~~~~ 271 (492)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 55544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=4.4e-11 Score=103.48 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=44.9
Q ss_pred CcEEEEEecCCcCCCC-chhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccc
Q 045751 189 KFLRVLDLGSLVLSQL-PSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNF 266 (492)
Q Consensus 189 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L 266 (492)
++|++|+|++|.++.+ |..+..+++|++|++++|.++.+|...|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4455555555555544 34455555555555555555555555445555555555555555555442 455555555555
Q ss_pred ccccc
Q 045751 267 GLFTL 271 (492)
Q Consensus 267 ~~~~~ 271 (492)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 55544
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=9.4e-10 Score=108.78 Aligned_cols=283 Identities=14% Similarity=0.102 Sum_probs=136.5
Q ss_pred ccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCC-----------
Q 045751 157 EDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIP----------- 222 (492)
Q Consensus 157 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~----------- 222 (492)
.+| |.+|+++.+..+-. .+...+|.+|++|+.+++.++ ++.++ ..+..+.+|+.+.+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~i~-----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~ 138 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVR-----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG 138 (394)
T ss_dssp TTTTTCTTEEEEECCTTCC-----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred HHhhCCCCceEEEeCCCcc-----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence 445 66777777654321 244556677777777777543 33333 34455555555444321
Q ss_pred ----------CCccCchhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecC
Q 045751 223 ----------SLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISAL 291 (492)
Q Consensus 223 ----------~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~ 291 (492)
.+..+....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+++..+ +...-...+.++..|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 122233344566667777766554 22333 23556666666665443 111112223335555555444
Q ss_pred CCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEeccc
Q 045751 292 HPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTE 370 (492)
Q Consensus 292 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~ 370 (492)
..............+|+.+.+... ....-...+..+..|+.+.+.. ++..+.- .+..+ ..++.+......
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~-----~~~~i~~~~F~~~-~~l~~~~~~~~~ 287 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQN-----NKLRIGGSLFYNC-SGLKKVIYGSVI 287 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECC-----TTCEECSCTTTTC-TTCCEEEECSSE
T ss_pred CCceEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCC-----Ccceeeccccccc-cccceeccCcee
Confidence 321111111333345555555432 1111112344555555555542 1111111 33344 555555554433
Q ss_pred CCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc
Q 045751 371 LMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP 449 (492)
Q Consensus 371 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp 449 (492)
+ ....+..+.+|+.+.+..+ +... -...+.++.+|+.+.+.+ .++.+.. .+..+++|+.+.+..+ ++.++
T Consensus 288 i---~~~~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~ 358 (394)
T 4fs7_A 288 V---PEKTFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIG 358 (394)
T ss_dssp E---CTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEEC
T ss_pred e---ccccccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEeh
Confidence 2 1224456667777766532 2211 123355666777777754 3555532 3566677777766543 33443
Q ss_pred -hhccCCCCCcEEEecC
Q 045751 450 -KQLWSVKRFKKLELWR 465 (492)
Q Consensus 450 -~~l~~l~~L~~L~l~~ 465 (492)
..+.+|++|+.+++..
T Consensus 359 ~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTBTTCTTCCEEEEEG
T ss_pred HHHhhCCCCCCEEEECC
Confidence 3566777777777654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=1.9e-10 Score=99.48 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=76.5
Q ss_pred EEEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhccccccccccccc
Q 045751 191 LRVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLF 269 (492)
Q Consensus 191 L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~ 269 (492)
.++++++++.++.+|..+. ++|++|++++|.|+.+++..|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4689999999999997664 7899999999999988666559999999999999999988865 589999999999999
Q ss_pred ccCCCCCccccCCcccceee
Q 045751 270 TLPAYPRNDCGSLENLNFIS 289 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~ 289 (492)
.+.+..+..+..+++|+.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEE
T ss_pred ccCEeCHHHhcCCCCCCEEE
Confidence 88543333333333333333
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.1e-10 Score=99.56 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=77.2
Q ss_pred EEEEecCCcCCCCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccc
Q 045751 192 RVLDLGSLVLSQLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFT 270 (492)
Q Consensus 192 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~ 270 (492)
+.++++++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 689999999999998765 7999999999999988665559999999999999999999876 5889999999999998
Q ss_pred cCCCCCccccCCcccceeec
Q 045751 271 LPAYPRNDCGSLENLNFISA 290 (492)
Q Consensus 271 ~~~~~p~~~~~l~~L~~l~~ 290 (492)
+.+..+..+..+++|+.+++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEEC
T ss_pred cceeCHHHhccccCCCEEEe
Confidence 85433322333444444433
No 145
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.99 E-value=4e-10 Score=128.02 Aligned_cols=109 Identities=10% Similarity=0.090 Sum_probs=90.9
Q ss_pred HHHHHHhhcccCChhhHHHHHhhhcccch---------------------------HHHHHHHHhhhcccccccccc---
Q 045751 4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI---------------------------EIVTSLLRDYECEIAGHLVNI--- 53 (492)
Q Consensus 4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~---------------------------~i~~~l~~sy~~~l~~~~k~~--- 53 (492)
+.++++|+++|+|+|||++++|+.|+.+. .+..++.+||+ .|+++.|+|
T Consensus 307 ~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~-~L~~~~~~~~~~ 385 (1249)
T 3sfz_A 307 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE-MLREDIKDYYTD 385 (1249)
T ss_dssp CTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHH-TSCTTTHHHHHH
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 45799999999999999999999998632 47889999999 488887766
Q ss_pred -------eeecHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHHhhcc
Q 045751 54 -------IVEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQVALAG 123 (492)
Q Consensus 54 -------~~~~~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~~~~~ 123 (492)
+.|+++.++.+|.++ ++.++.++++|+++||++... +|....|+|||++|++++..+.++
T Consensus 386 l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 386 LSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred hCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 368999999999654 466899999999999999765 444467999999999999886544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=2.5e-10 Score=111.65 Aligned_cols=138 Identities=16% Similarity=0.045 Sum_probs=81.8
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhc-cCCcEEEEEecCCcCCC--CchhhccccccCEEEccCCCCccCchhHH----
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICK-MFKFLRVLDLGSLVLSQ--LPSGIENLFFLRYLKLNIPSLKSLPSSFL---- 232 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~i~~lp~~~~---- 232 (492)
.+.|++|++++|.+...........+. ..++|++|+|++|.++. .......+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567778888777765111112233333 23688888888887762 22222345678888888888763322221
Q ss_pred -hcCCCccEEecCCCcccc-----hHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCCccchhhhCCCcc
Q 045751 233 -SSISNLYTLDMPFSYIHH-----TADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPN 306 (492)
Q Consensus 233 -~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~ 306 (492)
...++|++|+|++|.++. ++..+..+++|++|+|++|.+..... ..+...+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------------------~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------------------ELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------------------HHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------------------HHHHHHHhcCCC
Confidence 235778888888886643 44556677778888888776532100 011222556667
Q ss_pred cceEEeeec
Q 045751 307 LRKLRIHGD 315 (492)
Q Consensus 307 L~~L~l~~~ 315 (492)
|+.|++++|
T Consensus 213 L~~L~Ls~N 221 (372)
T 3un9_A 213 LQELNVAYN 221 (372)
T ss_dssp CCEEECCSS
T ss_pred cCeEECCCC
Confidence 777777777
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=2.5e-08 Score=98.44 Aligned_cols=268 Identities=10% Similarity=0.070 Sum_probs=166.9
Q ss_pred hHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchH-HHhhc
Q 045751 180 DCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTA-DVFWE 257 (492)
Q Consensus 180 ~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~ 257 (492)
+...+|.+|++|+.+.+..+ ++.++ .+|.+|.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..+. ..+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 44578899999999999754 66665 56889999999999754 77888888889999998877654 22222 12333
Q ss_pred ccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeE
Q 045751 258 MNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESL 336 (492)
Q Consensus 258 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 336 (492)
+..+......... ..-...+..+++|+.+.+.. ........+..+.+|+.+.+..+ ....-...+.++..|+.+
T Consensus 139 ~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~---~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN---LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT---CCEECTTTTTTCTTCCBC
T ss_pred ccccccccCcccc--ccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC---ceEeCchhhcccccccee
Confidence 3222222111111 11122344466666666653 22222333566666766666543 111112345555666655
Q ss_pred Eeec-----CC---CCCCccEEEe----------ecCCCCCCceEEEEecccCCCCCcccccCCCccCeEEEeccccCCC
Q 045751 337 KLVN-----ES---KMPRLSKIVL----------DEYQFPPSLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGR 398 (492)
Q Consensus 337 ~l~~-----~~---~~~~L~~L~l----------~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 398 (492)
.+.. ++ .+..|+.+.+ .+..+ ..|+.+.+..+.. ......+..++.++.+......+.
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~-~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGC-TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTC-SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--
T ss_pred ecCCCceEeehhhcccCCCceEEECCCceeccccccccc-ccceeEEcCCCcc-eeeccccccccccceeccCceeec--
Confidence 5543 11 3445555554 34566 7888888876642 334456778888888887654332
Q ss_pred cccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhccCCCCCcEEEecC
Q 045751 399 KLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKKLELWR 465 (492)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 465 (492)
...+..+.+|+.+.+.+ .++.+.. .+..+++|+.+++... ++.++ ..+.+|.+|+.+.+..
T Consensus 290 --~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp --TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred --ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 23467789999999976 4666654 4788999999999643 55554 4688999999998854
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=2.5e-09 Score=103.80 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=40.8
Q ss_pred hccCCcEEEEEecC-CcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccc
Q 045751 185 CKMFKFLRVLDLGS-LVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLR 262 (492)
Q Consensus 185 ~~~~~~L~~L~L~~-~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~ 262 (492)
+..+++|++|+|++ |.++.+| ..|+.+++|++|+|++|.|..+++..|.++++|+.|+|++|.+..+|..+.....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 44444555555543 4444333 334455555555555555554444333455555555555555444443322222255
Q ss_pred ccccccccc
Q 045751 263 HLNFGLFTL 271 (492)
Q Consensus 263 ~L~L~~~~~ 271 (492)
.|+|.+|.+
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 555554443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=105.90 Aligned_cols=167 Identities=14% Similarity=0.053 Sum_probs=115.7
Q ss_pred CCeeEEEEecCCCCccccccc-------CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCC-chh---
Q 045751 139 KMIKRLTANVNLSELDSLEDF-------NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQL-PSG--- 207 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l-~~~--- 207 (492)
..++.+.+..+.+.......+ .++|++|++++|.+. ..........+++|+.|+|++|.++.. ...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 467888888666655443332 269999999999875 233344445667899999999998722 222
Q ss_pred -h-ccccccCEEEccCCCCcc-----CchhHHhcCCCccEEecCCCcccc-----hHHHhhcccccccccccccccCCCC
Q 045751 208 -I-ENLFFLRYLKLNIPSLKS-----LPSSFLSSISNLYTLDMPFSYIHH-----TADVFWEMNKLRHLNFGLFTLPAYP 275 (492)
Q Consensus 208 -~-~~l~~L~~L~l~~~~i~~-----lp~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~~ 275 (492)
+ ...++|++|++++|.++. ++..+ ..+++|++|+|++|.++. ++..+...++|+.|+|++|.+....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 3 246789999999999974 44555 789999999999997754 4566788889999999999864211
Q ss_pred CccccCCcccceeecCCCCccchhhhCCCcccceEEeeeccCcchhhHHHHhhc
Q 045751 276 RNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDLSNNQSLLSKSLYK 329 (492)
Q Consensus 276 p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 329 (492)
.. .+...+...++|++|++++| .....-...+..
T Consensus 228 ~~------------------~l~~~L~~~~~L~~L~Ls~N--~i~~~g~~~L~~ 261 (372)
T 3un9_A 228 AL------------------ALARAAREHPSLELLHLYFN--ELSSEGRQVLRD 261 (372)
T ss_dssp HH------------------HHHHHHHHCSSCCEEECTTS--SCCHHHHHHHHH
T ss_pred HH------------------HHHHHHHhCCCCCEEeccCC--CCCHHHHHHHHH
Confidence 11 11222556677888888888 344444444444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.2e-08 Score=98.81 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=80.8
Q ss_pred EEEecCC-cCCCCchhhccccccCEEEccC-CCCccCchhHHhcCCCccEEecCCCcccchHH-Hhhccccccccccccc
Q 045751 193 VLDLGSL-VLSQLPSGIENLFFLRYLKLNI-PSLKSLPSSFLSSISNLYTLDMPFSYIHHTAD-VFWEMNKLRHLNFGLF 269 (492)
Q Consensus 193 ~L~L~~~-~l~~l~~~~~~l~~L~~L~l~~-~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~ 269 (492)
.++.+++ .++.+|. +..+++|++|+|++ |.+..+|+..|+++++|+.|+|++|.+..+|. .|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 99999987666999999999999999988865 5899999999999999
Q ss_pred ccCCCCCccccCCcccceeecCC
Q 045751 270 TLPAYPRNDCGSLENLNFISALH 292 (492)
Q Consensus 270 ~~~~~~p~~~~~l~~L~~l~~~~ 292 (492)
.+.+..+..+..+. |+.|++.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCS
T ss_pred ccceeCHHHcccCC-ceEEEeeC
Confidence 98643333333343 77777653
No 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.72 E-value=9.3e-09 Score=109.64 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=78.9
Q ss_pred HHHHHhhcccCChhhHHHHHhhhcccc------------hHHHHHHHHhhhccccccc-ccce----------eecHHHH
Q 045751 5 RLRRLLSGEEVTLPDAAKQLAQNLHTE------------IEIVTSLLRDYECEIAGHL-VNII----------VEEEEMI 61 (492)
Q Consensus 5 ~~~~~i~~~~~GlPLa~~~lg~~L~~~------------~~i~~~l~~sy~~~l~~~~-k~~~----------~~~~~~L 61 (492)
.++++| |+|+|||++++|+.|+++ ..+..++.+||+. ||++. |+|| .|+++.+
T Consensus 317 eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~-Lp~eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 317 DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHH-SCTTHHHHHHHHTTSSCTTSCEEHHHH
T ss_pred HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHh-CCHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 344444 999999999999999987 2577889999995 88888 8764 5888999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHH
Q 045751 62 YQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPAL 116 (492)
Q Consensus 62 i~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~ 116 (492)
+.+|+++|. +.++.++++|+++||++... ....|+|||++++++
T Consensus 393 a~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 393 SLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 999998862 45889999999999999841 124799999999865
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.64 E-value=5.4e-07 Score=88.82 Aligned_cols=291 Identities=10% Similarity=0.036 Sum_probs=173.0
Q ss_pred cccc--C-CCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCc---CCCCc-hhhccccccCEEEccCCCCccCc
Q 045751 156 LEDF--N-LYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLV---LSQLP-SGIENLFFLRYLKLNIPSLKSLP 228 (492)
Q Consensus 156 ~~~~--~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---l~~l~-~~~~~l~~L~~L~l~~~~i~~lp 228 (492)
..+| + ..|+++.+..+.. .+...+|.+|++|+.+.+..+. ++.+. .+|..+.+|+.+.+.. .+..++
T Consensus 56 ~~aF~~~~~~L~sI~iP~svt-----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~ 129 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDTVT-----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEID 129 (394)
T ss_dssp TTTTTTCCSCCCEEEECTTCC-----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEEC
T ss_pred HhhccCCCCcCEEEEECCCee-----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceeh
Confidence 3455 4 3589998876533 2566789999999999998763 55554 5677888888887754 467777
Q ss_pred hhHHhcCCCccEEecCCCcccchH-HHhhcccccccccccccccCCCCCccccCCcccceeecCC-CCccchhhhCCCcc
Q 045751 229 SSFLSSISNLYTLDMPFSYIHHTA-DVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALH-PRCCTPDILGRLPN 306 (492)
Q Consensus 229 ~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~-~~~~~~~~l~~l~~ 306 (492)
...|..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+- ..+.........|+.+.+.. ....-..++..+.+
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTT
T ss_pred hhhhhhhcccccccccce-eeeecccceeccccccccccccee--eEeccccccccceeEEEECCcccccccchhhhccc
Confidence 777789999999998765 33333 336777888888765431 12222211234566666653 11122222556666
Q ss_pred cceEEeeeccCcchhhHH-----------HHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCC
Q 045751 307 LRKLRIHGDLSNNQSLLS-----------KSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMED 374 (492)
Q Consensus 307 L~~L~l~~~~~~~~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~ 374 (492)
+................. ........+..+.+. ..++.+.- .+..+ ..|+.+.+..... ..
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-----~~v~~i~~~aF~~c-~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-----NGVARIETHAFDSC-AYLASVKMPDSVV-SI 279 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-----TTEEEECTTTTTTC-SSCCEEECCTTCC-EE
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcC-----CcceEcccceeeec-ccccEEecccccc-ee
Confidence 666554432100000000 000011112222221 12221111 45566 7788887765432 23
Q ss_pred CcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhc
Q 045751 375 PMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQL 452 (492)
Q Consensus 375 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l 452 (492)
....+.++++|+.+.+. +.+... ....+.++.+|+.+.|.. .++.+.. .+..+.+|+.+.|-.+ ++.++ ..+
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF 353 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITEL-PESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAF 353 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGG
T ss_pred cCcccccccccccccCC-Cccccc-CceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHh
Confidence 34467788889988886 333321 234567888999999875 4666643 4788899999998643 45554 468
Q ss_pred cCCCCCcEEEecCCCH
Q 045751 453 WSVKRFKKLELWRPQP 468 (492)
Q Consensus 453 ~~l~~L~~L~l~~c~~ 468 (492)
.+|++|+.+++.+...
T Consensus 354 ~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCTTCCEEEESSCHH
T ss_pred hCCCCCCEEEECCcee
Confidence 8999999999988753
No 153
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.52 E-value=1e-07 Score=99.30 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=84.5
Q ss_pred HHHHHHhhcccCChhhHHHHHhhhcccch---------------------------HHHHHHHHhhhcccccccccce--
Q 045751 4 ERLRRLLSGEEVTLPDAAKQLAQNLHTEI---------------------------EIVTSLLRDYECEIAGHLVNII-- 54 (492)
Q Consensus 4 ~~~~~~i~~~~~GlPLa~~~lg~~L~~~~---------------------------~i~~~l~~sy~~~l~~~~k~~~-- 54 (492)
+..+++|+++|+|+|||++.+|+.++.+. .+...+..||+. +|++.|+||
T Consensus 307 ~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~-L~~~~~~~l~~ 385 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM-LREDIKDYYTD 385 (591)
T ss_dssp CTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHT-SCTTTHHHHHH
T ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 45789999999999999999999997643 456788999994 888877653
Q ss_pred --------eecHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhcceeeeeccCCCccceEEeChhHHHHHHHH
Q 045751 55 --------VEEEEMIYQLWIAEGFIPDNNEGTAEKYLEHLINRGFVEAKKIKVGSRINTCSIPNRWWPALIQV 119 (492)
Q Consensus 55 --------~~~~~~Li~~wia~gf~~~~~~~~~~~~~~~L~~~~li~~~~~~~~g~~~~~~mhd~~~~l~~~~ 119 (492)
.|+.+.++.+|.++ .+.+..++++|+++++++... +|....|+||++++++++..
T Consensus 386 la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 386 LSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp GGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHH
T ss_pred ccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhh
Confidence 57888899989543 245788999999999999654 33335799999999999876
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.52 E-value=6.4e-07 Score=88.32 Aligned_cols=305 Identities=10% Similarity=0.066 Sum_probs=184.9
Q ss_pred CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccC
Q 045751 139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLR 215 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~ 215 (492)
..++.+.+. +....+...+| |.+|+++.+..+.... -..+...+|..+..|+.+.+..+ ++.++ ..+..+.+|+
T Consensus 64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 358899998 77888888888 9999999998653110 02355678899999998877654 44444 5678899999
Q ss_pred EEEccCCCCccCchhHHhcCCCccEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC-
Q 045751 216 YLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR- 294 (492)
Q Consensus 216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~- 294 (492)
.+.+.. .+..++...|..+.+|+.+.+..+ +..+........+|+.+.+..+.. ......+..+..+.........
T Consensus 141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSS
T ss_pred cccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceeccccccc
Confidence 999964 466777777899999999999775 444443333345688776654321 1222334445556555443100
Q ss_pred ccchhh--------------hCCCcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCC
Q 045751 295 CCTPDI--------------LGRLPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPP 359 (492)
Q Consensus 295 ~~~~~~--------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~ 359 (492)
...... ......+..+.+... ....-..++..+.+|+.+.+.. .+..+.- .+.++ .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c-~ 288 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNC-P 288 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTC-T
T ss_pred ccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEeccc-----ccceecCcccccc-c
Confidence 000000 111122333333221 1112234577788888888752 2222211 45567 7
Q ss_pred CceEEEEecccCCCCCcccccCCCccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCccccccEEE
Q 045751 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGAMPKLECLI 438 (492)
Q Consensus 360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~ 438 (492)
+|+.+.+... +.......|.++.+|+.+.+..+ ++.. -...+.++.+|+.+.+.. .++.+. ..+..+++|+.++
T Consensus 289 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 289 ALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred ccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence 8888887532 33444557888999999999743 3221 144577889999999975 456554 3478899999999
Q ss_pred EeecCCcCccchhccCCCCCcEEEecCC
Q 045751 439 IDPCAYLKRLPKQLWSVKRFKKLELWRP 466 (492)
Q Consensus 439 l~~c~~l~~lp~~l~~l~~L~~L~l~~c 466 (492)
+.++... ...+..+.+|+.+.+...
T Consensus 364 ~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 364 YSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ESSCHHH---HHTCBCCCCC--------
T ss_pred ECCceee---hhhhhccCCCCEEEeCCC
Confidence 9875422 245667788888877543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=7.7e-08 Score=84.12 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=75.1
Q ss_pred CCCeeEEEeecC-CCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cc
Q 045751 160 NLYLHSLLCLSS-ESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LP 228 (492)
Q Consensus 160 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp 228 (492)
.+.|++|++++| .+...........+...+.|++|+|++|.++ .+...+...++|++|++++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 677888888877 6542112245566677788888888888776 234555666778888888888773 44
Q ss_pred hhHHhcCCCccEEec--CCCcccc-----hHHHhhccccccccccccccc
Q 045751 229 SSFLSSISNLYTLDM--PFSYIHH-----TADVFWEMNKLRHLNFGLFTL 271 (492)
Q Consensus 229 ~~~~~~l~~L~~L~L--~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~ 271 (492)
..+ ...++|++|+| ++|.++. +...+...++|++|++++|.+
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 445 66777888888 6675543 445566667788888877765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=3.6e-08 Score=95.58 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=72.6
Q ss_pred HHHHhhcCCCCCeEEeecCCCCCCccEEEeecCCCCCCceEEEEecccCCCCCccccc--CCCccCeEEEec--cccCCC
Q 045751 323 LSKSLYKLSSLESLKLVNESKMPRLSKIVLDEYQFPPSLTHLSFSNTELMEDPMPTLE--KLPLLQVLKLKK--NSYLGR 398 (492)
Q Consensus 323 ~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~l~~--~~~~~~ 398 (492)
+...+..+++|+.|++++ +..++ +. .+ .. ++|++|+|..|.+.......+. .+|+|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g---~~~l~-l~-~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKG---TNNLS-IG-KK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEEC---CBTCB-CC-SC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeC---CCCce-ec-cc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 445555666777777663 11111 00 11 24 6777777777766444433443 677777777753 111111
Q ss_pred c-c-----cccCCCCccccEEeecccCCcceEEE---ccCccccccEEEEeecCCcC----ccchhccCCCCCcEEEecC
Q 045751 399 K-L-----TCGSHGFPKLKVLHLKSMLWLEEWTM---GTGAMPKLECLIIDPCAYLK----RLPKQLWSVKRFKKLELWR 465 (492)
Q Consensus 399 ~-~-----~~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~ 465 (492)
. + ......||+|+.|.+.+|......+. ....+|+|+.|+++.|.... .++..+.++++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 0 0 11123577777777777633211111 12356777777777665433 2344445667777777777
Q ss_pred CC
Q 045751 466 PQ 467 (492)
Q Consensus 466 c~ 467 (492)
|.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 64
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=2.1e-07 Score=90.14 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=42.9
Q ss_pred ccCCcEEEEEecCCcCC----------CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcccch-HHH
Q 045751 186 KMFKFLRVLDLGSLVLS----------QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYIHHT-ADV 254 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~----------~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l~~l-p~~ 254 (492)
.++++|+.|.+...... .+...+..+++|+.|+++++.-..++. + .+++|++|++..|.+..- ...
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K--PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C--BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c--cCCCCcEEEEecCCCChHHHHH
Confidence 34556666666443211 244445566777777776653223443 3 367777777776654321 122
Q ss_pred hh--ccccccccccc
Q 045751 255 FW--EMNKLRHLNFG 267 (492)
Q Consensus 255 ~~--~l~~L~~L~L~ 267 (492)
+. .+++|++|+|+
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 32 56777777764
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=1.1e-07 Score=81.17 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=45.9
Q ss_pred CceEEEEecccCCCCCcccccCCCccCeEEEeccc-cCCCcccccCCC----CccccEEeecccCCcceEE-EccCcccc
Q 045751 360 SLTHLSFSNTELMEDPMPTLEKLPLLQVLKLKKNS-YLGRKLTCGSHG----FPKLKVLHLKSMLWLEEWT-MGTGAMPK 433 (492)
Q Consensus 360 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~-~~~~~l~~ 433 (492)
.|++|++++|.+++.....+.++++|+.|+|++|. +++..+.. +.. .++|+.|+|++|+.++.-- ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56667777666665555556666666666666664 44333221 111 2356666666665555210 11344556
Q ss_pred ccEEEEeecCCcC
Q 045751 434 LECLIIDPCAYLK 446 (492)
Q Consensus 434 L~~L~l~~c~~l~ 446 (492)
|+.|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 6666666665544
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=2.2e-07 Score=81.16 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=85.8
Q ss_pred hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCcc-----CchhHHhcCCCccEEecCCCcc
Q 045751 180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LPSSFLSSISNLYTLDMPFSYI 248 (492)
Q Consensus 180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~~l~~L~~L~L~~~~l 248 (492)
.....+...+.|++|+|++| .++ .+...+...++|++|+|++|.|.. +...+ ...++|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC
Confidence 56678888999999999999 876 345667778899999999999873 44445 6778899999999977
Q ss_pred cc-----hHHHhhcccccccccc--cccccCCCCCccccCCcccceeecCCCCccchhhhCCCcccceEEeeecc
Q 045751 249 HH-----TADVFWEMNKLRHLNF--GLFTLPAYPRNDCGSLENLNFISALHPRCCTPDILGRLPNLRKLRIHGDL 316 (492)
Q Consensus 249 ~~-----lp~~~~~l~~L~~L~L--~~~~~~~~~p~~~~~l~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 316 (492)
+. +...+...++|++|++ ++|.+..... ..+...+...++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence 54 4566777788888888 6676532111 1122225666778888888873
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=7.2e-06 Score=80.21 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=48.8
Q ss_pred CCeeEEEEecCCCCccccccc--CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCch-hhccccccC
Q 045751 139 KMIKRLTANVNLSELDSLEDF--NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLPS-GIENLFFLR 215 (492)
Q Consensus 139 ~~~r~lsl~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~ 215 (492)
.+++.+.+. +.+..+...+| |.+|+++.+..+.. .+...+|.++ .|..+.+..+ ++.++. +|.. .+|+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~-----~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT-----SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC-----EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce-----EechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 456677776 66666666666 67777777754422 2444556665 3555555432 333332 2332 3566
Q ss_pred EEEccCCCCccCchhHHhcCCCccEEecC
Q 045751 216 YLKLNIPSLKSLPSSFLSSISNLYTLDMP 244 (492)
Q Consensus 216 ~L~l~~~~i~~lp~~~~~~l~~L~~L~L~ 244 (492)
.+.+..+ +..+....|.++ +|+...+.
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred cccCCCc-cccccccccccc-eeeeeecc
Confidence 6666543 334444443443 34444443
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.2e-06 Score=74.76 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=66.1
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEE-EccCc----cccccEEEEeecCCcCc-cchhccCCC
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWT-MGTGA----MPKLECLIIDPCAYLKR-LPKQLWSVK 456 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~-lp~~l~~l~ 456 (492)
..|+.|++++|.+++..+.. +..+++|+.|+|++|..++..- ..+.. .++|+.|+|++|+.++. --..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 47999999999988777544 5789999999999998887431 11333 46899999999987763 223567899
Q ss_pred CCcEEEecCCC
Q 045751 457 RFKKLELWRPQ 467 (492)
Q Consensus 457 ~L~~L~l~~c~ 467 (492)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999998
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=3.1e-05 Score=75.68 Aligned_cols=277 Identities=9% Similarity=0.045 Sum_probs=134.6
Q ss_pred CCCeeEEEeecCCCCCCCchhHHHHhccCCcEEEEEecCCcCCCCc-hhhccccccCEEEccCCCCccCchhHHhcCCCc
Q 045751 160 NLYLHSLLCLSSESHHLDPLDCEKICKMFKFLRVLDLGSLVLSQLP-SGIENLFFLRYLKLNIPSLKSLPSSFLSSISNL 238 (492)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L 238 (492)
..+|+++.+...-. .+...+|.+|.+|+.+.|..+ ++.++ .+|..+ +|+.+.+.. .+..++...|..+ +|
T Consensus 45 ~~~i~~v~ip~~vt-----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 45 RDRISEVRVNSGIT-----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGCSEEEECTTEE-----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred ccCCEEEEeCCCcc-----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence 56788888765432 255677888888888888654 55554 445555 577776653 4667777765554 78
Q ss_pred cEEecCCCcccchHHHhhcccccccccccccccCCCCCccccCCcccceeecCCCC---------------ccchhhhCC
Q 045751 239 YTLDMPFSYIHHTADVFWEMNKLRHLNFGLFTLPAYPRNDCGSLENLNFISALHPR---------------CCTPDILGR 303 (492)
Q Consensus 239 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~l~~~~~~---------------~~~~~~l~~ 303 (492)
+.+.+..+ +..+........+|+...+..+ +...-...+..+..+....+.... ..... +..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES-YPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE-CCT
T ss_pred ccccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc-ccc
Confidence 88888665 2233222222223444433221 111111222234444444433100 00001 222
Q ss_pred CcccceEEeeeccCcchhhHHHHhhcCCCCCeEEeecCCCCCCccEEEe-ecCCCCCCceEEEEecccCCCCCcccccCC
Q 045751 304 LPNLRKLRIHGDLSNNQSLLSKSLYKLSSLESLKLVNESKMPRLSKIVL-DEYQFPPSLTHLSFSNTELMEDPMPTLEKL 382 (492)
Q Consensus 304 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~l~~l 382 (492)
...+..+.+... ........+..+.+|+.+.+.. +++.+.- .+..+ ..|+.+.+..+ +.......+.++
T Consensus 193 ~~~~~~~~~~~~---~~~i~~~~f~~~~~l~~i~~~~-----~~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 193 AKTGTEFTIPST---VKTVTAYGFSYGKNLKKITITS-----GVTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCSSCSEEECCT-----TCCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccccccc---eeEEeecccccccccceeeecc-----ceeEEccccccCC-ccceEEEcCCC-ccEeCcccccee
Confidence 223333332221 1111122334445555555532 1221111 23345 56666666543 222333455566
Q ss_pred CccCeEEEeccccCCCcccccCCCCccccEEeecccCCcceEEE-ccCccccccEEEEeecCCcCccc-hhccCCCCCcE
Q 045751 383 PLLQVLKLKKNSYLGRKLTCGSHGFPKLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIDPCAYLKRLP-KQLWSVKRFKK 460 (492)
Q Consensus 383 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~ 460 (492)
.+|+.+.+..+ +... ....+.++++|+.+.+.++ .++.++. .+..+++|+.+.+..+ ++.++ ..+.+|.+|+.
T Consensus 263 ~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 263 TALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCC
T ss_pred ehhcccccccc-ceec-ccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCE
Confidence 66666666522 2211 1233556667777777653 4555542 3566677777766432 34443 34666677776
Q ss_pred EEe
Q 045751 461 LEL 463 (492)
Q Consensus 461 L~l 463 (492)
+.+
T Consensus 338 i~i 340 (379)
T 4h09_A 338 ISY 340 (379)
T ss_dssp CCC
T ss_pred EEE
Confidence 665
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.4e-05 Score=73.43 Aligned_cols=78 Identities=23% Similarity=0.139 Sum_probs=47.4
Q ss_pred ccCCcEEEEEecCCcCCCCc---hhhccccccCEEEccCCCCccCchhHHhcCC--CccEEecCCCcccc-hH-------
Q 045751 186 KMFKFLRVLDLGSLVLSQLP---SGIENLFFLRYLKLNIPSLKSLPSSFLSSIS--NLYTLDMPFSYIHH-TA------- 252 (492)
Q Consensus 186 ~~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~--~L~~L~L~~~~l~~-lp------- 252 (492)
.++++|+.|+|++|.++.++ ..+..+++|++|+|++|.|..+. .+ ..+. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45677777777777766433 45566777777777777777552 23 4444 67777777775532 21
Q ss_pred HHhhccccccccc
Q 045751 253 DVFWEMNKLRHLN 265 (492)
Q Consensus 253 ~~~~~l~~L~~L~ 265 (492)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2255666666663
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=1.7e-06 Score=79.59 Aligned_cols=66 Identities=24% Similarity=0.139 Sum_probs=53.7
Q ss_pred ccccccCEEEccCCCCccCc---hhHHhcCCCccEEecCCCcccchHHHhhccc--ccccccccccccCCCCC
Q 045751 209 ENLFFLRYLKLNIPSLKSLP---SSFLSSISNLYTLDMPFSYIHHTADVFWEMN--KLRHLNFGLFTLPAYPR 276 (492)
Q Consensus 209 ~~l~~L~~L~l~~~~i~~lp---~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~L~~~~~~~~~p 276 (492)
..+++|+.|+|++|.|..++ ..+ ..+++|+.|+|++|.+..+. .+..+. +|+.|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 46889999999999998655 444 89999999999999887773 355555 89999999998876655
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.06 E-value=0.00049 Score=59.73 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred CCCeeEEEeecC-CCCCCCchhHHHHhccCCcEEEEEecCCcCC-----CCchhhccccccCEEEccCCCCcc-----Cc
Q 045751 160 NLYLHSLLCLSS-ESHHLDPLDCEKICKMFKFLRVLDLGSLVLS-----QLPSGIENLFFLRYLKLNIPSLKS-----LP 228 (492)
Q Consensus 160 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp 228 (492)
.+.|+.|+++++ .+.......+...+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.|.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 455666666653 4331112234555566666666666666655 333444455566666666666651 22
Q ss_pred hhHHhcCCCccEEecCCC---ccc-----chHHHhhccccccccccccc
Q 045751 229 SSFLSSISNLYTLDMPFS---YIH-----HTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 229 ~~~~~~l~~L~~L~L~~~---~l~-----~lp~~~~~l~~L~~L~L~~~ 269 (492)
..+ ..-+.|++|+|+++ .++ .+...+..-+.|+.|+++.+
T Consensus 120 ~aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 222 33445666666543 222 23333445555666655444
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0028 Score=51.19 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=46.3
Q ss_pred EEEecCCcCC--CCchhhccccccCEEEccCCCCccCchhHHhcCCCccEEecCCCcc
Q 045751 193 VLDLGSLVLS--QLPSGIENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMPFSYI 248 (492)
Q Consensus 193 ~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~~~~l 248 (492)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|..+|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6788888888 8886543 4799999999999999999889999999999999843
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.30 E-value=0.0059 Score=52.91 Aligned_cols=89 Identities=9% Similarity=0.068 Sum_probs=65.6
Q ss_pred hHHHHhccCCcEEEEEecCC-cCC-----CCchhhccccccCEEEccCCCCc-----cCchhHHhcCCCccEEecCCCcc
Q 045751 180 DCEKICKMFKFLRVLDLGSL-VLS-----QLPSGIENLFFLRYLKLNIPSLK-----SLPSSFLSSISNLYTLDMPFSYI 248 (492)
Q Consensus 180 ~~~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~~l~~L~~L~L~~~~l 248 (492)
.+...+.+-+.|+.|+|+++ .+. .+-+.+..-+.|+.|+|++|.|. .+...+ ..-+.|++|+|++|.+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC
Confidence 55667778889999999986 665 34566677788999999999987 344444 6678899999999976
Q ss_pred c-----chHHHhhccccccccccccc
Q 045751 249 H-----HTADVFWEMNKLRHLNFGLF 269 (492)
Q Consensus 249 ~-----~lp~~~~~l~~L~~L~L~~~ 269 (492)
+ .+-..+..-+.|++|+|++|
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4 33444566667888888754
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.38 E-value=0.0093 Score=48.09 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=46.1
Q ss_pred CEEEccCCCCc--cCchhHHhcCCCccEEecCCCcccchHHH-hhcccccccccccccccC
Q 045751 215 RYLKLNIPSLK--SLPSSFLSSISNLYTLDMPFSYIHHTADV-FWEMNKLRHLNFGLFTLP 272 (492)
Q Consensus 215 ~~L~l~~~~i~--~lp~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~~~ 272 (492)
..++.++++++ .+|..+ -.+|++|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888889998 999755 45799999999999999865 678999999999988653
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=38.36 E-value=45 Score=30.66 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=22.4
Q ss_pred hHHHHHHhhcccCChhhHHHHHhhhc
Q 045751 3 SERLRRLLSGEEVTLPDAAKQLAQNL 28 (492)
Q Consensus 3 ~~~~~~~i~~~~~GlPLa~~~lg~~L 28 (492)
++...++|.+.++|.|+++..++..+
T Consensus 224 ~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 224 PENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46678899999999999999998764
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.22 E-value=42 Score=24.85 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=14.7
Q ss_pred hccccccCEEEccCCCCccCchhHHhcCCCccEEecC
Q 045751 208 IENLFFLRYLKLNIPSLKSLPSSFLSSISNLYTLDMP 244 (492)
Q Consensus 208 ~~~l~~L~~L~l~~~~i~~lp~~~~~~l~~L~~L~L~ 244 (492)
|..|..|+.+.+.. .++.+....|.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 34444444444432 2333333333444444444443
No 171
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=30.44 E-value=30 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.2
Q ss_pred cccCChhhHHHHHhhhccc
Q 045751 12 GEEVTLPDAAKQLAQNLHT 30 (492)
Q Consensus 12 ~~~~GlPLa~~~lg~~L~~ 30 (492)
++.+-+|||..+.++.+..
T Consensus 6 rkrrklplavav~agv~~a 24 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCCCTHHHHHHHHTTCC
T ss_pred eccccCchHHHHHHHHhHh
Confidence 4567899999999987653
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=27.31 E-value=14 Score=34.05 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHhCCCC---CC--hHHHHHHHHH-HHHHhcceee
Q 045751 65 WIAEGFIP---DN--NEGTAEKYLE-HLINRGFVEA 94 (492)
Q Consensus 65 wia~gf~~---~~--~~~~~~~~~~-~L~~~~li~~ 94 (492)
-+..||+. .| ..+.|..||+ ++++|++||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34568886 34 8889999998 8999999885
Done!