BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045752
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 339 bits (870), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 168/254 (66%), Positives = 203/254 (79%), Gaps = 3/254 (1%)
Query: 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVL 60
GCDAS+LLDG+DSEK A PN NSARGFEVID IK AVE C GVVSCADIL +AARDSV+
Sbjct: 48 GCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVV 107
Query: 61 LSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
LSGGP W+V LGR+DGLVANQ AN LPSPFE L+ + AKF AV LNI D+V+LSGAHT
Sbjct: 108 LSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTF 167
Query: 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDLFDNH 179
G AKCA FSNRL NF+G G PDAT++TSL+S LQ++C G+ N T PLDR++ D FDN+
Sbjct: 168 GQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNN 227
Query: 180 YFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239
YF+NL+ KGLLSSDQIL+SSD A +TT+ LVE+YS + +LFF +F +MI+MGN+S
Sbjct: 228 YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--N 285
Query: 240 GTNGEIRKNCRAVN 253
G +GE+R NCR +N
Sbjct: 286 GASGEVRTNCRVIN 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 290 bits (741), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/258 (58%), Positives = 191/258 (74%), Gaps = 7/258 (2%)
Query: 1 GCDASVLLDGS---DSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + SEK A PN NSARGF V+D IKTA+E C GVVSC+D+LA+A+
Sbjct: 49 GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSG 116
SV L+GGP+W VLLGRRD L AN GAN ++PSP E L+ +T KF+AVGLN DLV+LSG
Sbjct: 109 SVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSG 168
Query: 117 AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDL 175
AHT G A+C F+NRL NFSGTG PD T++++L+S LQ LC NG + T LD ++ D
Sbjct: 169 AHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDA 228
Query: 176 FDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235
FDN+YF NL +N GLL SDQ L+S+ S+T ++V S++SN LFF F SMI MGN+
Sbjct: 229 FDNNYFANLQSNDGLLQSDQELFST--TGSSTIAIVTSFASNQTLFFQAFAQSMINMGNI 286
Query: 236 SPLTGTNGEIRKNCRAVN 253
SPLTG+NGEIR +C+ VN
Sbjct: 287 SPLTGSNGEIRLDCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/258 (59%), Positives = 190/258 (73%), Gaps = 7/258 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD S S EK A PN NSARGF V+D IKTA+E C GVVSC D+LA+A++
Sbjct: 50 GCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQA 109
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSG 116
SV LSGGP+W V LGRRD L ANQ GAN ++PSP +GL+ +T+KF+AVGLN DLV+LSG
Sbjct: 110 SVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSG 169
Query: 117 AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCAN-GDGNNTTPLDRNSIDL 175
AHT G A C FSNRL NFSG G PD T++T+L+S LQ LC G G+ +T LD ++ D
Sbjct: 170 AHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDA 229
Query: 176 FDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235
FDN+YF NL +N GLL SDQ L+S+ S T ++V S++SN LFF F SMI MGN+
Sbjct: 230 FDNNYFTNLQSNNGLLQSDQELFST--TGSATIAIVTSFASNQTLFFQAFAQSMINMGNI 287
Query: 236 SPLTGTNGEIRKNCRAVN 253
SPLTG++GEIR +C+ N
Sbjct: 288 SPLTGSSGEIRLDCKKTN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 170/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + +D +
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 168/260 (64%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 238 bits (606), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 168/260 (64%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 236 bits (602), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/258 (51%), Positives = 171/258 (66%), Gaps = 16/258 (6%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDASVLLD + + EK A PN NS RGFEVID IK+ VE C GVVSCADILA+AARD
Sbjct: 48 GCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARD 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNIKDLVSLSG 116
SV+ GG +W VLLGRRD A+ + AN+ LP+PF L+ L + F+ G K+LV+LSG
Sbjct: 108 SVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSG 167
Query: 117 AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCAN-GDGNNTTPLDRNSIDL 175
AHTIG A+C F R+ N ++ +D + LQ+ C + G N +P D + +
Sbjct: 168 AHTIGQAQCTAFRTRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNK 220
Query: 176 FDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235
FDN Y+ NL N KGLL SDQ L++ +T+S V +YS+N+ F +F N+MIKMGN+
Sbjct: 221 FDNAYYINLRNKKGLLHSDQQLFNG----VSTDSQVTAYSNNAATFNTDFGNAMIKMGNL 276
Query: 236 SPLTGTNGEIRKNCRAVN 253
SPLTGT+G+IR NCR N
Sbjct: 277 SPLTGTSGQIRTNCRKTN 294
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 169/260 (65%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G H+ G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 168/260 (64%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+L
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY 167
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C F +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 227
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 228 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 286
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 287 ITPLTGTQGQIRLNCRVVNS 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/258 (54%), Positives = 171/258 (66%), Gaps = 7/258 (2%)
Query: 1 GCDASVLLDGSD---SEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCD SVLL+ +D SE+ A PN NS RG +V++ IKTAVE C VSCADILAIAA
Sbjct: 48 GCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEI 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNIKDLVSLSG 116
+ +L GGP W V LGRRD L AN+T AN LP+PF L L A FA GLN DLV+LSG
Sbjct: 108 ASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSG 167
Query: 117 AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSIDL 175
HT G A+C+ F NRL NFS TG PD T++T+ + L++ C N G+N T LD ++ D
Sbjct: 168 GHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQ 227
Query: 176 FDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235
FDN Y+ NL+ GLL SDQ L+S+ A T +V S+SSN N FF+NF SMIKMGN+
Sbjct: 228 FDNRYYSNLLQLNGLLQSDQELFSTPGAD--TIPIVNSFSSNQNTFFSNFRVSMIKMGNI 285
Query: 236 SPLTGTNGEIRKNCRAVN 253
LTG GEIR C VN
Sbjct: 286 GVLTGDEGEIRLQCNFVN 303
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/260 (51%), Positives = 168/260 (64%), Gaps = 7/260 (2%)
Query: 1 GCDASVLLDGSDS---EKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDAS+LLD + S EK A N NSARGF VID +K AVE C VSCAD+L IAA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNI-KDLVSLS 115
SV L+GGP+W+V LGRRD L A ANA LP+PF L L F VGLN DLV+LS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 116 GAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA-NGDGNNTTPLDRNSID 174
G HT G +C +RL NFS TG PD T++T+ + L+ LC NG+ + D +
Sbjct: 169 GGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPT 228
Query: 175 LFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234
+FDN Y+ NL KGL+ SDQ L+SS A T LV S+++++ FF FV +M +MGN
Sbjct: 229 IFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIP-LVRSFANSTQTFFNAFVEAMDRMGN 287
Query: 235 VSPLTGTNGEIRKNCRAVNS 254
++PLTGT G+IR NCR VNS
Sbjct: 288 ITPLTGTQGQIRLNCRVVNS 307
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 153/262 (58%), Gaps = 13/262 (4%)
Query: 1 GCDASVLLDGS---DSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARD 57
GCDASVLLD + +EK A PN S RGFEVI A K+AVE C VSCADILA AARD
Sbjct: 48 GCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD 107
Query: 58 SVLLSGGPTWKVLLGRRDGLVANQTGANA-LPSPFEGLNILTAKFAAVGLNIKDLVSLSG 116
S L+G T++V GRRDG V+ + ANA +PSP L FA L ++V+LSG
Sbjct: 108 SANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSG 167
Query: 117 AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTP----LDRNS 172
AH+IG A C+ F+NRL NF+ D T+ S + L++ C + TP LD +
Sbjct: 168 AHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCP-ANSTRFTPITVSLDIIT 226
Query: 173 IDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM 232
+ DN Y+ + GLL+SDQ L + ++ + V++ + N + + F +M+KM
Sbjct: 227 PSVLDNMYYTGVQLTLGLLTSDQALVT----EANLSAAVKANAMNLTAWASKFAQAMVKM 282
Query: 233 GNVSPLTGTNGEIRKNCRAVNS 254
G + LTGT GEIR NC VNS
Sbjct: 283 GQIEVLTGTQGEIRTNCSVVNS 304
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 154/262 (58%), Gaps = 20/262 (7%)
Query: 1 GCDASVLLDGSDS---EKFAAPN---RNSARGFEVIDAIKTAVEGQCSG-VVSCADILAI 53
GCDASVLLDGS + E+ A PN R SA F+ ++ I+ +E +C G VVSC+DILA+
Sbjct: 55 GCDASVLLDGSATGPGEQQAPPNLTLRPSA--FKAVNDIRDRLERECRGAVVSCSDILAL 112
Query: 54 AARDSVLLSGGPTWKVLLGRRD--GLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDL 111
AARDSV++SGGP ++V LGRRD + Q + LP P + L A +GL+ DL
Sbjct: 113 AARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDL 172
Query: 112 VSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRN 171
V++SG HTIG A C+ F +RL PD T+ + +S L+ C + T LD
Sbjct: 173 VTISGGHTIGLAHCSSFEDRL-----FPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR 227
Query: 172 SIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIK 231
+ ++FDN Y+ +L+N +GL SDQ L+++ + T +VE ++ + FF F S+ K
Sbjct: 228 TPNVFDNKYYIDLVNREGLFVSDQDLFTN----AITRPIVERFAQSQQDFFEQFGVSIGK 283
Query: 232 MGNVSPLTGTNGEIRKNCRAVN 253
MG + T GE+R+NC N
Sbjct: 284 MGQMRVRTSDQGEVRRNCSVRN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
+VS AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL+ +D+V+LSG HTIG A S F G
Sbjct: 147 AMGLSDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 176
Query: 163 NNTTPLDRNSIDLFDNHYFQNLINNK--GLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ + GLL SD+ L + S LVE Y+++
Sbjct: 177 ----PWTSNPL-IFDNSYFTELLTGEKDGLLQLPSDKALLTD----SVFRPLVEKYAADE 227
Query: 219 NLFFANFVNSMIKMGNV 235
++FFA++ + +K+ +
Sbjct: 228 DVFFADYAEAHLKLSEL 244
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 41/211 (19%)
Query: 37 VEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANAL------PSP 90
++ + SGV + AD+ +A+ ++ +GGP + GR D Q PSP
Sbjct: 80 IKDKYSGV-TYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSP 138
Query: 91 FEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDA--TMDTS 148
+ L + F +GLN K++V+LSGAHT+G ++ + SG G P+ T D
Sbjct: 139 AQHLRDV---FYRMGLNDKEIVALSGAHTLGRSR--------PDRSGWGKPETKYTKDGP 187
Query: 149 LVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKG----LLSSDQILYSSDEAK 204
QS A FDN YF+++ + +L +D L+
Sbjct: 188 GAPGGQSWTAQ-------------WLKFDNSYFKDIKERRDEDLLVLPTDAALFED---- 230
Query: 205 STTESLVESYSSNSNLFFANFVNSMIKMGNV 235
+ + E Y+++ FF ++ + K+ N+
Sbjct: 231 PSFKVYAEKYAADPEAFFKDYAEAHAKLSNL 261
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 176
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 177 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 227
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 176
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 177 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 227
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 176
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 177 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 227
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKEASGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 146
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 147 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 176
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 177 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 227
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 228 DAFFADYAEAHQKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 46/197 (23%)
Query: 44 VVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFA- 102
++S AD +A +V ++GGP GR D G LP +G + L F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGR--LPDATKGSDHLRDVFGK 158
Query: 103 AVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDG 162
A+GL +D+V+LSG HTIG A S F G
Sbjct: 159 AMGLTDQDIVALSGGHTIGAA-----HKERSGFEG------------------------- 188
Query: 163 NNTTPLDRNSIDLFDNHYFQNLI--NNKGLLS--SDQILYSSDEAKSTTESLVESYSSNS 218
P N + +FDN YF L+ +GLL SD+ L S LV+ Y+++
Sbjct: 189 ----PWTSNPL-IFDNSYFTELLSGEKEGLLQLPSDKALLSD----PVFRPLVDKYAADE 239
Query: 219 NLFFANFVNSMIKMGNV 235
+ FFA++ + K+ +
Sbjct: 240 DAFFADYAEAHQKLSEL 256
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 45 VSCADILAIAARDSVLLSGGPTWKVLLGR---RDGLVANQTGANALPSPFEGLNILTAKF 101
+S AD+ +AA ++ GGPT GR +DG V G LP + + + F
Sbjct: 85 ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGR--LPDGSKTQSHVREVF 142
Query: 102 AAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDAT-MDTSLVSEL--QSLCA 158
+G N ++ V+L GAHT G F S + G D D S ++L +
Sbjct: 143 RRLGFNDQETVALIGAHTCGECHIEF-----SGYHGPWTHDKNGFDNSFFTQLLDEDWVL 197
Query: 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNS 218
N +DR + L +L SD L + VE Y+ ++
Sbjct: 198 NPKVEQMQLMDRATTKLM-------------MLPSDVCLL----LDPSYRKYVELYAKDN 240
Query: 219 NLFFANFVNSMIKM 232
+ F +F N+ K+
Sbjct: 241 DRFNKDFANAFKKL 254
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 45 VSCADILAIAARDSVLLSGGPTWKVLLGR---RDGLVANQTGANALPSPFEGLNILTAKF 101
+S AD+ +AA ++ GGPT GR +DG V G LP + + + F
Sbjct: 86 ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGR--LPDGSKTQSHVREVF 143
Query: 102 AAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDAT-MDTSLVSEL--QSLCA 158
+G N ++ V+L GAHT G F S + G D D S ++L +
Sbjct: 144 RRLGFNDQETVALIGAHTCGECHIEF-----SGYHGPWTHDKNGFDNSFFTQLLDEDWVL 198
Query: 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNS 218
N +DR + L +L SD L + VE Y+ ++
Sbjct: 199 NPKVEQMQLMDRATTKLM-------------MLPSDVCLL----LDPSYRKYVELYAKDN 241
Query: 219 NLFFANFVNSMIKM 232
+ F +F N+ K+
Sbjct: 242 DRFNKDFANAFKKL 255
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 45 VSCADILAIAARDSVLLSGGPTWKVLLGR---RDGLVANQTGANALPSPFEGLNILTAKF 101
+S AD+ +AA ++ GGPT GR +DG V G LP + + + F
Sbjct: 86 ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGR--LPDGSKTQSHVREVF 143
Query: 102 AAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDAT-MDTSLVSEL--QSLCA 158
+G N ++ V+L GAHT G F S + G D D S ++L +
Sbjct: 144 RRLGFNDQETVALIGAHTCGETHIEF-----SGYHGPWTHDKNGFDNSFFTQLLDEDWVL 198
Query: 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNS 218
N +DR + L +L SD L + VE Y+ ++
Sbjct: 199 NPKVEQMQLMDRATTKLM-------------MLPSDVCLL----LDPSYRKYVELYAKDN 241
Query: 219 NLFFANFVNSMIKM 232
+ F +F N+ K+
Sbjct: 242 DRFNKDFANAFKKL 255
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 55/222 (24%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAHT+G L N G DAT
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG-------KTHLKNSGYEGPWDAT- 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKS 205
NN +FDN ++ NL+N L + ++KS
Sbjct: 195 -----------------NN----------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKS 227
Query: 206 ---------------TTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 228 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 41/215 (19%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAP---- 141
LP + + + F + +N +++V+LSGAHT+G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLG-------KTHLKN-SGYEGPWTAN 194
Query: 142 ----DATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQIL 197
D + +L++E L N D NN D S Y Q L + L+ + L
Sbjct: 195 NNVFDNSFYLNLLNEDWKLEKN-DANNEQ-WDSKS------GYLQ-LPTDYSLIQDPKYL 245
Query: 198 YSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 -----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++VSL +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDN 178
A S + F T G D+ ++T L L A+ G +PL + I L +
Sbjct: 173 AADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSD 231
Query: 179 HY----------FQNLINNK 188
H +Q+++NN+
Sbjct: 232 HLLARDPQTACEWQSMVNNQ 251
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 41/215 (19%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAP---- 141
LP + + + F + +N +++V+L GAHT+G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG-------KTHLKN-SGYEGPWTAN 194
Query: 142 ----DATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQIL 197
D + +L++E L N D NN D S Y Q L + L+ + L
Sbjct: 195 NNVFDNSFYLNLLNEDWKLEKN-DANNEQ-WDSKS------GYLQ-LPTDYSLIQDPKYL 245
Query: 198 YSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 -----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAP---- 141
LP + + + F + +N +++V+L GAHT+G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG-------KTHLKN-SGYEGPWTAN 194
Query: 142 ----DATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQIL 197
D + +L++E L N D NN ++ + Y +LI + L
Sbjct: 195 PNVFDNSFYLNLLNEDWKLEKN-DANNEQWDSKSGYMMLPTDY--SLIQDPKYL------ 245
Query: 198 YSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 -----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 41/215 (19%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAP---- 141
LP + + + F + +N +++V+L GAHT+G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG-------KTHLKN-SGYEGPWTAN 194
Query: 142 ----DATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQIL 197
D + +L++E L N D NN ++ + Y +LI + L
Sbjct: 195 NNVFDNSFYLNLLNEDWKLEKN-DANNEQWDSKSGYMMLPTDY--SLIQDPKYL------ 245
Query: 198 YSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 -----------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 63 GGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGF 122
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAA 173
Query: 123 AKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNH 179
A S + F T G D+ ++T L L A+ G +PL + I L +H
Sbjct: 174 ADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSDH 232
Query: 180 Y----------FQNLINNK 188
+Q+++NN+
Sbjct: 233 LLARDPQTACEWQSMVNNQ 251
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDN 178
A S + F T G D+ ++T L L A+ G +PL + I L +
Sbjct: 173 AAAKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSD 231
Query: 179 HY----------FQNLINNK 188
H +Q+++NN+
Sbjct: 232 HLLARDPQTACEWQSMVNNQ 251
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDN 178
A S + F T G D+ ++T L L A+ G +PL + I L +
Sbjct: 173 AADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSD 231
Query: 179 HY----------FQNLINNK 188
H +Q+++NN+
Sbjct: 232 HLLARDPQTACEWQSMVNNQ 251
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 63 GGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGF 122
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAA 173
Query: 123 AKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNH 179
A S + F T G D+ ++T L L A+ G +PL + I L +H
Sbjct: 174 ADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSDH 232
Query: 180 Y----------FQNLINNK 188
+Q+ +NN+
Sbjct: 233 LLARDPQTACEWQSFVNNQ 251
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 63 GGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGF 122
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAA 173
Query: 123 AKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFD 177
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 174 ADGVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQS 230
Query: 178 NHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 231 DHLLARDPQTACEWQSMVNNQ 251
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 16 FAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCAD 49
F AP+RN RGF I T C G ++C D
Sbjct: 83 FCAPDRNHERGFSYICRDGTTRRWMCHGFLACKD 116
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLF 176
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 173 AADKVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQ 229
Query: 177 DNHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 230 SDHLLARDPQTACEWQSMVNNQ 251
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L N L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLF 176
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 173 AADKVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQ 229
Query: 177 DNHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 230 SDHLLARDPQTACEWQSMVNNQ 251
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 63 GGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGF 122
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPD--HLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAA 173
Query: 123 AKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFD 177
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 174 ADKVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQS 230
Query: 178 NHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 231 DHLLARDPQTACEWQSMVNNQ 251
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLF 176
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 173 AADGVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQ 229
Query: 177 DNHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 230 SDHLLARDPQTACEWQSMVNNQ 251
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 16 FAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCAD 49
F AP+RN RGF I T C G ++C D
Sbjct: 98 FCAPDRNHERGFSYICRDGTTRRWMCHGFLACKD 131
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 63 GGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGF 122
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPD--HLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAA 173
Query: 123 AKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFD 177
A S + F T P+ ++T L L A+ G +PL + I L
Sbjct: 174 ADKVDPSIPGTPFDST--PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQS 230
Query: 178 NHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 231 DHLLARDPQTACEWQSMVNNQ 251
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G + S + G GA +
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGANNVFT 194
Query: 146 DT---SLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDE 202
+ +L++E L N D NN ++ + Y +LI + L
Sbjct: 195 NEFYLNLLNEDWKLEKN-DANNEQWDSKSGYMMLPTDY--SLIQDPKYL----------- 240
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 241 ------SIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L N L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G + S + G GA +
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGANNVFT 200
Query: 146 DT---SLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDE 202
+ +L++E L N D NN ++ + Y +LI + L
Sbjct: 201 NEFYLNLLNEDWKLEKN-DANNEQWDSKSGYMMLPTDY--SLIQDPKYL----------- 246
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 247 ------SIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + +L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G + S + G GA +
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KNSGYEGGGANNVFT 195
Query: 146 DT---SLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDE 202
+ +L++E L N D NN ++ + Y +LI + L
Sbjct: 196 NEFYLNLLNEDWKLEKN-DANNEQWDSKSGYMMLPTDY--SLIQDPKYL----------- 241
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 242 ------SIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNCFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P PF+ ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGTGAPDA-----TMDTSLVSELQSLCANGDGNNTTPLDRNSIDLF 176
A S + F T P ++T L L A+ G +PL + I L
Sbjct: 173 AADKVDPSIPGTPFDST--PQVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQ 229
Query: 177 DNHY----------FQNLINNK 188
+H +Q+++NN+
Sbjct: 230 SDHLLARDPQTACEWQSMVNNQ 251
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPQGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 193
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 194 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 244
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 245 ------SIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPQGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 55/222 (24%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWG-- 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKS 205
CAN ++F N ++ NL+N L + ++KS
Sbjct: 195 -----------CAN--------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS 229
Query: 206 ---------------TTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 230 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALG-------KTHLKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 178
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 87 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 141
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 142 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 177
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 86 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 140
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 141 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 192
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 193 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 243
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 244 ------SIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 81 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 135
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 136 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 171
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 140 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 175
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 180
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 77/210 (36%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEA-- 203
+ +E N D L++N + N + S I+ +D +
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDAN-----------NEQWDSKSGYIMLPTDYSLI 241
Query: 204 -KSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 242 QDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPGGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 145 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 180
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + + F + +N +++V+L GAH +G
Sbjct: 143 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 178
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 197
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 198 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 248
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 249 ------SIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 55/222 (24%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGP---- 187
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKS 205
G NN +F N Y+ NL+N L + ++KS
Sbjct: 188 -------------WGAANN----------VFTNEYYLNLLNEDWKLEKNDANNEQWDSKS 224
Query: 206 ---------------TTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 225 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPYGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTI 120
+GGP + L GR + ++ + +P P + + + A+ A +G + ++V L +H+I
Sbjct: 122 AGGPRLQFLAGRSN--ISQPSPDGLVPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTELKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 90 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 144
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 145 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPFGAA 196
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 197 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 247
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 248 ------SIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 191
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 192 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 242
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 243 ------SIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 55/222 (24%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGP---- 193
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKS 205
G NN +F N ++ NL+N L + ++KS
Sbjct: 194 -------------WGAANN----------VFTNEFYLNLLNEDWKLEKNDANNEQWDSKS 230
Query: 206 -----TTE----------SLVESYSSNSNLFFANFVNSMIKM 232
TE S+V+ Y+++ + FF +F + K+
Sbjct: 231 GYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 31/210 (14%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATM 145
LP + + F + +N +++V+L GAH +G L N SG P
Sbjct: 143 RLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALG-------KTHLKN-SGYEGPWGAA 194
Query: 146 DTSLVSELQSLCANGDGNNTTPLDRNSI--DLFDNHY-FQNLINNKGLLSSDQILYSSDE 202
+ +E N D L++N + +D+ + L + L+ + L
Sbjct: 195 NNVFTNEFYLNLLNEDWK----LEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL----- 245
Query: 203 AKSTTESLVESYSSNSNLFFANFVNSMIKM 232
S+V+ Y+++ + FF +F + K+
Sbjct: 246 ------SIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 85 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 139
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + F + +N +++V+L GAH +G
Sbjct: 140 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 175
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 91 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 145
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + F + +N +++V+L GAH +G
Sbjct: 146 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 181
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 26 GFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN 85
GF+ ++ I +S D+ ++ +V GP GR D
Sbjct: 88 GFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 142
Query: 86 ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
LP + + F + +N +++V+L GAH +G
Sbjct: 143 RLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG 178
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIG 121
GG LGR D + A+ + +P P + ++ + A+ G + ++V L +H+I
Sbjct: 115 PGGVRIPFFLGRPDAVAASPD--HLVPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIA 172
Query: 122 FAKCAFFSNRLSNFSGT-GAPDAT--MDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDN 178
A S + F T G D+ ++T L L A+ G +PL + I L +
Sbjct: 173 AADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPL-QGEIRLQSD 231
Query: 179 HY----------FQNLINNK 188
H +Q+++NN+
Sbjct: 232 HLLARDPQTACEWQSMVNNQ 251
>pdb|1SXR|A Chain A, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
pdb|1SXR|B Chain B, Drosophila Peptidoglycan Recognition Protein (Pgrp)-Sa
Length = 183
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 33 IKTAVEGQCSGVVSCADILA--IAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSP 90
I V G+CSG++ CA+IL A + L ++ L+G DG+V TG +
Sbjct: 40 IHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDISYNFLIG-NDGIVYEGTGWGLRGAH 98
Query: 91 FEGLNILTAKFAAVGLNIKDLVS 113
G N + A +G + L S
Sbjct: 99 TYGYNAIGTGIAFIGNFVDKLPS 121
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 203 AKSTTESLVESYSSNSNLFFANFVNS 228
A TTESL E Y+S L A+F NS
Sbjct: 632 AMPTTESLAEVYASADQLAIASFYNS 657
>pdb|1S2J|A Chain A, Crystal Structure Of The Drosophila Pattern-Recognition
Receptor Pgrp-Sa
pdb|1S2J|B Chain B, Crystal Structure Of The Drosophila Pattern-Recognition
Receptor Pgrp-Sa
Length = 209
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 32 AIKTAVEGQCSGVVSCADIL 51
I V G+CSG++ CA+IL
Sbjct: 65 VIHHTVTGECSGLLKCAEIL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,322,582
Number of Sequences: 62578
Number of extensions: 291882
Number of successful extensions: 885
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 129
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)