Query 045752
Match_columns 258
No_of_seqs 118 out of 1105
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.9E-83 4.1E-88 586.3 20.7 248 1-253 71-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.7E-79 3.7E-84 558.6 21.3 247 1-252 48-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 8.1E-60 1.8E-64 425.3 19.8 201 1-251 53-258 (289)
4 PF00141 peroxidase: Peroxidas 100.0 4.1E-59 8.9E-64 411.6 9.3 199 1-217 32-230 (230)
5 PLN02879 L-ascorbate peroxidas 100.0 1.9E-56 4.1E-61 397.2 17.8 188 1-238 56-248 (251)
6 PLN02364 L-ascorbate peroxidas 100.0 8.8E-56 1.9E-60 393.5 17.8 188 1-238 55-248 (250)
7 cd00691 ascorbate_peroxidase A 100.0 1.8E-55 3.9E-60 392.6 18.2 183 13-239 61-252 (253)
8 cd00692 ligninase Ligninase an 100.0 2.5E-54 5.4E-59 396.0 20.0 203 1-255 65-289 (328)
9 cd00649 catalase_peroxidase_1 100.0 1.2E-53 2.5E-58 397.7 19.2 225 1-243 92-401 (409)
10 TIGR00198 cat_per_HPI catalase 100.0 1.2E-50 2.6E-55 398.8 19.8 225 1-243 102-408 (716)
11 cd00314 plant_peroxidase_like 100.0 1.4E-50 3E-55 362.0 17.5 192 1-234 41-255 (255)
12 PRK15061 catalase/hydroperoxid 100.0 2.4E-48 5.2E-53 380.8 19.3 225 1-243 104-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 9.9E-42 2.2E-46 303.0 13.8 189 1-234 64-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 6.3E-37 1.4E-41 275.4 15.7 192 1-236 52-296 (297)
15 PRK15061 catalase/hydroperoxid 100.0 1.2E-31 2.7E-36 263.4 16.3 192 1-237 477-722 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 1E-31 2.2E-36 265.2 15.2 189 1-237 470-710 (716)
17 COG0376 KatG Catalase (peroxid 100.0 1.9E-31 4.1E-36 251.9 15.8 211 12-237 126-417 (730)
18 COG0376 KatG Catalase (peroxid 99.4 1.6E-12 3.4E-17 124.3 10.4 183 5-236 492-725 (730)
19 PTZ00411 transaldolase-like pr 85.2 10 0.00022 35.6 10.5 75 45-119 161-251 (333)
20 PRK12309 transaldolase/EF-hand 79.8 24 0.00052 33.9 11.0 64 45-108 155-224 (391)
21 TIGR00874 talAB transaldolase. 71.0 50 0.0011 30.8 10.3 65 45-109 149-219 (317)
22 PRK12346 transaldolase A; Prov 59.2 9.3 0.0002 35.6 3.2 64 45-108 150-219 (316)
23 PF11895 DUF3415: Domain of un 57.9 9.4 0.0002 28.4 2.4 30 220-253 2-31 (80)
24 cd00957 Transaldolase_TalAB Tr 51.6 17 0.00036 33.9 3.5 67 45-111 149-221 (313)
25 PRK05269 transaldolase B; Prov 38.0 32 0.0007 32.0 3.2 65 45-109 151-221 (318)
26 PF06163 DUF977: Bacterial pro 33.2 65 0.0014 26.1 3.7 58 178-253 44-103 (127)
27 cd00439 Transaldolase Transald 32.8 38 0.00081 30.4 2.7 78 25-109 127-210 (252)
28 PRK01362 putative translaldola 31.1 27 0.00059 30.6 1.4 42 62-112 121-162 (214)
29 TIGR00875 fsa_talC_mipB fructo 29.7 27 0.00059 30.6 1.2 41 62-111 121-161 (213)
30 PLN00017 photosystem I reactio 25.0 36 0.00079 25.6 0.9 20 214-233 38-57 (90)
31 PF00043 GST_C: Glutathione S- 23.4 1.4E+02 0.0031 21.1 4.0 24 41-64 51-74 (95)
32 PF11020 DUF2610: Domain of un 21.2 1.5E+02 0.0032 22.1 3.5 30 29-58 50-79 (82)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.9e-83 Score=586.35 Aligned_cols=248 Identities=51% Similarity=0.835 Sum_probs=234.5
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN 80 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~ 80 (258)
||||||||++...|+++++|. +++||++|+.||+.+|++||++|||||||+||||+||+++|||.|+|++||+|+.+|.
T Consensus 71 GCDaSvLl~~~~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~ 149 (324)
T PLN03030 71 GCDASILIDGSNTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSL 149 (324)
T ss_pred CCceEEeeCCCcccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCC
Confidence 899999999767899999998 8899999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCC-CCCCCCCHHHHHHHHhhcC-
Q 045752 81 QTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTG-APDATMDTSLVSELQSLCA- 158 (258)
Q Consensus 81 ~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~-~~dp~~d~~~~~~L~~~c~- 158 (258)
...+.+||.|+.++++|+..|+++||+.+|||+||||||||++||.+|.+|||||.|++ .+||+||+.|+.+|++.||
T Consensus 150 ~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~ 229 (324)
T PLN03030 150 ASDASNLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ 229 (324)
T ss_pred cccccCCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC
Confidence 65554899999999999999999999999999999999999999999999999999875 5799999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhCh----HHHHHHHHHHHHHhhc
Q 045752 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNS----NLFFANFVNSMIKMGN 234 (258)
Q Consensus 159 ~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~----~~F~~~Fa~A~~Km~~ 234 (258)
.++++..+++|+.||.+|||+||+++++++|+|+||++|++|+ +|+++|++||.|+ ++|+++|++||+||++
T Consensus 230 ~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~----~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~ 305 (324)
T PLN03030 230 NGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA----STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSN 305 (324)
T ss_pred CCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc----cHHHHHHHHhcccccchhhhHHHHHHHHHHHcc
Confidence 3433446789999999999999999999999999999999999 9999999999875 5999999999999999
Q ss_pred CCCCCCCCCcccccccccc
Q 045752 235 VSPLTGTNGEIRKNCRAVN 253 (258)
Q Consensus 235 lgv~tg~~GeiR~~C~~~n 253 (258)
|+|+||.+|||||+|+++|
T Consensus 306 i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 306 IGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCCCCCCCCceeccccccC
Confidence 9999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.7e-79 Score=558.63 Aligned_cols=247 Identities=55% Similarity=0.939 Sum_probs=234.8
Q ss_pred CCCceeecCC---CcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCC
Q 045752 1 GCDASVLLDG---SDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGL 77 (258)
Q Consensus 1 GcDaSill~~---~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~ 77 (258)
||||||||++ ..+|+++++|. +++||++|+.||+++|++||++|||||||+||+|+||+++|||.|+|++||+|+.
T Consensus 48 GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~ 126 (298)
T cd00693 48 GCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGR 126 (298)
T ss_pred CcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCc
Confidence 8999999985 56899999999 6799999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhc
Q 045752 78 VANQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLC 157 (258)
Q Consensus 78 ~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c 157 (258)
.+.+..+.+||.|+.+++++++.|+++||+++|||+|+||||||++||..|.+|+|+|+|++.+||+||+.|+..|++.|
T Consensus 127 ~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~C 206 (298)
T cd00693 127 VSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKC 206 (298)
T ss_pred ccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCC
Confidence 77654333799999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred C-CCCCCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCC
Q 045752 158 A-NGDGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVS 236 (258)
Q Consensus 158 ~-~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lg 236 (258)
| .+++...++||..||.+|||+||++++.++|+|.||++|+.|+ +|+++|++||+||++|+++|++||+||+++|
T Consensus 207 p~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~----~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~ 282 (298)
T cd00693 207 PAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGLLTSDQALLSDP----RTRAIVNRYAANQDAFFRDFAAAMVKMGNIG 282 (298)
T ss_pred CCCCCCCccccCCCCCCCccccHHHHHHHhcccCccCCHHhccCc----cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcC
Confidence 9 4445567899999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCCccccccccc
Q 045752 237 PLTGTNGEIRKNCRAV 252 (258)
Q Consensus 237 v~tg~~GeiR~~C~~~ 252 (258)
|+||.+|||||+|+++
T Consensus 283 v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 283 VLTGSQGEIRKNCRVV 298 (298)
T ss_pred CccCCCCccCCccccC
Confidence 9999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=8.1e-60 Score=425.33 Aligned_cols=201 Identities=27% Similarity=0.440 Sum_probs=184.0
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN 80 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~ 80 (258)
||||||++. +|+++++|.++.++|++|+.||.++ + +|||||||+||||+||+.+|||.|+|++||+|+.++.
T Consensus 53 GcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~----~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~ 124 (289)
T PLN02608 53 GPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP 124 (289)
T ss_pred CCCeeeecc---cccCCccccchHHHHHHHHHHHHHc----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC
Confidence 899999997 7999999995557999999999987 3 7999999999999999999999999999999999885
Q ss_pred ccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCC
Q 045752 81 QTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCAN 159 (258)
Q Consensus 81 ~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~~ 159 (258)
++ +||.|+.+++++++.|+++||+.+|||+|+||||||++||. |+ +|.|.
T Consensus 125 ---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~----r~-g~~g~--------------------- 175 (289)
T PLN02608 125 ---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPE----RS-GFDGP--------------------- 175 (289)
T ss_pred ---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccccc----CC-CCCCC---------------------
Confidence 34 79999999999999999999999999999999999999995 55 44321
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHhhc--cCc--cccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC
Q 045752 160 GDGNNTTPLDRNSIDLFDNHYFQNLINN--KGL--LSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235 (258)
Q Consensus 160 ~~~~~~~~~d~~tp~~fDn~Yy~~l~~~--~gl--l~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~l 235 (258)
.+ .||.+|||+||++++++ +|+ |+||++|+.|+ +|+++|+.||.||++|+++|++||+||++|
T Consensus 176 --------~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~----~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~l 242 (289)
T PLN02608 176 --------WT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDP----EFRPYVELYAKDEDAFFRDYAESHKKLSEL 242 (289)
T ss_pred --------CC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcCh----hHHHHHHHHhhCHHHHHHHHHHHHHHHHcC
Confidence 01 58999999999999998 787 79999999999 999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccc
Q 045752 236 SPLTGTNGEIRKNCRA 251 (258)
Q Consensus 236 gv~tg~~GeiR~~C~~ 251 (258)
||+||.+||+.+..+-
T Consensus 243 gvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 243 GFTPPSSAFKKKSTST 258 (289)
T ss_pred CCCCCCCCcccccCcc
Confidence 9999999999886653
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.1e-59 Score=411.55 Aligned_cols=199 Identities=53% Similarity=0.889 Sum_probs=177.6
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN 80 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~ 80 (258)
|||||||+. ..|+++++|.++.+++++|+.||++++++||++|||||||+||+++||+++|||.|+|++||+|+.++.
T Consensus 32 GcDgSil~~--~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~ 109 (230)
T PF00141_consen 32 GCDGSILLF--SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSS 109 (230)
T ss_dssp SSSSGGGGS--TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGG
T ss_pred ccccceecc--ccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccccccc
Confidence 899999994 599999999955559999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCC
Q 045752 81 QTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANG 160 (258)
Q Consensus 81 ~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~~~ 160 (258)
...+.+||.|..++++|++.|++|||+++|||||+||||||++||.+|. ||| + .+||+||+.|+.. .|+.+
T Consensus 110 ~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C~~~ 180 (230)
T PF00141_consen 110 PSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLY-F----PPDPTMDPGYAGQ---NCNSG 180 (230)
T ss_dssp HHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTS-C----SSGTTSTHHHHHH---SSSTS
T ss_pred ccccccccccccccchhhhhhhccccchhhhcceecccccccceecccc-ccc-c----cccccccccccee---ccCCC
Confidence 6432259999999999999999999999999999999999999999999 999 5 4699999999988 89533
Q ss_pred CCCCCCCCCCCCCCccchHHHHHHhhccCccccchhhccCCccchhHHHHHHHHhhC
Q 045752 161 DGNNTTPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTESLVESYSSN 217 (258)
Q Consensus 161 ~~~~~~~~d~~tp~~fDn~Yy~~l~~~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d 217 (258)
+...+++| ||.+|||+||+++++++++|.||++|+.|+ +|+++|++||+|
T Consensus 181 -~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~----~t~~~V~~yA~d 230 (230)
T PF00141_consen 181 -GDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP----ETRPIVERYAQD 230 (230)
T ss_dssp -GCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST----THHHHHHHHHHT
T ss_pred -cccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH----HHHHHHHHHhcC
Confidence 23377888 999999999999999999999999999999 999999999976
No 5
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.9e-56 Score=397.23 Aligned_cols=188 Identities=29% Similarity=0.484 Sum_probs=172.4
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN 80 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~ 80 (258)
||||||++. .|+++++|.|+..++++|++||+++ ++|||||||+||+++||+.+|||.|+|++||+|+..+.
T Consensus 56 G~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~ 127 (251)
T PLN02879 56 GPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP 127 (251)
T ss_pred CCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC
Confidence 899999986 7999999997666999999999997 37999999999999999999999999999999999875
Q ss_pred ccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCC
Q 045752 81 QTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCAN 159 (258)
Q Consensus 81 ~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~~ 159 (258)
++ +||.|+.++++|++.|++|||+++|||||+||||||++||. | ++|.|.
T Consensus 128 ---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~----r-~g~~g~--------------------- 178 (251)
T PLN02879 128 ---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKE----R-SGFEGA--------------------- 178 (251)
T ss_pred ---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccc----c-ccCCCC---------------------
Confidence 34 79999999999999999999999999999999999999995 4 344331
Q ss_pred CCCCCCCCCCCCCCCccchHHHHHHhhc--cCc--cccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC
Q 045752 160 GDGNNTTPLDRNSIDLFDNHYFQNLINN--KGL--LSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNV 235 (258)
Q Consensus 160 ~~~~~~~~~d~~tp~~fDn~Yy~~l~~~--~gl--l~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~l 235 (258)
.| .||.+|||+||++++.+ +|+ |+||++|+.|| +|+++|++||.||++|+++|++||+||++|
T Consensus 179 --------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~----~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~l 245 (251)
T PLN02879 179 --------WT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDP----LFLPFVEKYAADEDAFFEDYTEAHLKLSEL 245 (251)
T ss_pred --------CC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCC----cHHHHHHHHhhCHHHHHHHHHHHHHHHHcc
Confidence 12 58999999999999998 787 67999999999 999999999999999999999999999999
Q ss_pred CCC
Q 045752 236 SPL 238 (258)
Q Consensus 236 gv~ 238 (258)
|+-
T Consensus 246 g~~ 248 (251)
T PLN02879 246 GFA 248 (251)
T ss_pred CCC
Confidence 984
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8.8e-56 Score=393.49 Aligned_cols=188 Identities=31% Similarity=0.513 Sum_probs=171.1
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCccc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN 80 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~ 80 (258)
||||||.++ +|+++++|.++.++|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.++.
T Consensus 55 G~dgSi~~~---~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~ 126 (250)
T PLN02364 55 GPFGTMRFD---AEQAHGANSGIHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP 126 (250)
T ss_pred CCCcccccc---ccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc
Confidence 899999776 7999999996669999999999997 37999999999999999999999999999999999886
Q ss_pred ccCCC-CCCCCCCCHHHHHHHHHH-cCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcC
Q 045752 81 QTGAN-ALPSPFEGLNILTAKFAA-VGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA 158 (258)
Q Consensus 81 ~~~~~-~lP~p~~~~~~l~~~F~~-~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~ 158 (258)
+ + .||.|..++++|++.|++ |||+.+|||+|+||||||++|| .|+ +|.|.
T Consensus 127 ~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~-------------------- 178 (250)
T PLN02364 127 P---EGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA-------------------- 178 (250)
T ss_pred c---cCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccC----CCC-CCCCC--------------------
Confidence 3 4 799999999999999996 6999999999999999999999 354 44331
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHhhc--cCccc--cchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc
Q 045752 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINN--KGLLS--SDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN 234 (258)
Q Consensus 159 ~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~--~gll~--sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~ 234 (258)
.+ .||.+|||+||++++.+ +|+|. ||++|+.|+ +|+.+|+.||.|++.|+++|++||+||++
T Consensus 179 ---------~~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~----~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~ 244 (250)
T PLN02364 179 ---------WT-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDP----VFRPLVEKYAADEDAFFADYAEAHMKLSE 244 (250)
T ss_pred ---------CC-CCCCccchHHHHHHhcCCcCCCccccchHHHccCc----hHHHHHHHHhhCHHHHHHHHHHHHHHHHc
Confidence 11 58999999999999998 88865 999999999 99999999999999999999999999999
Q ss_pred CCCC
Q 045752 235 VSPL 238 (258)
Q Consensus 235 lgv~ 238 (258)
||+-
T Consensus 245 lg~~ 248 (250)
T PLN02364 245 LGFA 248 (250)
T ss_pred cCCC
Confidence 9973
No 7
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.8e-55 Score=392.64 Aligned_cols=183 Identities=25% Similarity=0.383 Sum_probs=168.4
Q ss_pred ccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcccccCCC-CCCCCC
Q 045752 13 SEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPF 91 (258)
Q Consensus 13 ~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~ 91 (258)
+|+++++|.++.++|++|++||+++ | +|||||||+||||+||+.+|||.|+|++||+|+.++....++ +||.|+
T Consensus 61 ~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~ 135 (253)
T cd00691 61 PELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDAS 135 (253)
T ss_pred hhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCC
Confidence 7999999996669999999999986 4 799999999999999999999999999999999999876666 899999
Q ss_pred CCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCC
Q 045752 92 EGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRN 171 (258)
Q Consensus 92 ~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~~~~~~~~~~~d~~ 171 (258)
.++++++..|+++||+.+|||+|+||||||++||.. ++|.|. +..
T Consensus 136 ~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~-----~~~~g~------------------------------~~~ 180 (253)
T cd00691 136 KGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKER-----SGYDGP------------------------------WTK 180 (253)
T ss_pred CCHHHHHHHHHhcCCCHHHHHHhcccceeecccccC-----CCCCCC------------------------------CCC
Confidence 999999999999999999999999999999999953 234331 115
Q ss_pred CCCccchHHHHHHhhccC--------ccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCC
Q 045752 172 SIDLFDNHYFQNLINNKG--------LLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLT 239 (258)
Q Consensus 172 tp~~fDn~Yy~~l~~~~g--------ll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~t 239 (258)
||.+|||+||++++.+++ +|.||++|+.|+ +|+++|+.||+|+++|+++|++||+||+++||..
T Consensus 181 tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~----~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 181 NPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDP----KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred CCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCc----cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999 999999999999 9999999999999999999999999999999863
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-54 Score=396.01 Aligned_cols=203 Identities=26% Similarity=0.418 Sum_probs=180.6
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh-CCCCceecCCCCCCCcc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLS-GGPTWKVLLGRRDGLVA 79 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~-GGP~~~v~~GR~D~~~s 79 (258)
|||||||++ .+.|+++++|.| ++ ++|+.||..++++| |||||||+|||++||+.+ |||.|+|++||+|+..+
T Consensus 65 GcDgSill~-~~~E~~~~~N~g-L~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s 137 (328)
T cd00692 65 GADGSIVLF-DDIETAFHANIG-LD--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQP 137 (328)
T ss_pred CcCceeecC-CcccccCCCCCC-HH--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCC
Confidence 899999998 347999999984 45 89999999999987 999999999999999965 99999999999999988
Q ss_pred cccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhcccccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcC
Q 045752 80 NQTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLSGAHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA 158 (258)
Q Consensus 80 ~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGaHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~ 158 (258)
. ++ .||.|+.++++|++.|++|||+.+|||+|+||||||++|. .||+++
T Consensus 138 ~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~---------------~Dps~~------------ 187 (328)
T cd00692 138 A---PDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDF---------------VDPSIA------------ 187 (328)
T ss_pred C---cccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCC---------------CCCCCC------------
Confidence 6 34 7999999999999999999999999999999999999982 255543
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHh-hccC-------------------ccccchhhccCCccchhHHHHHHHHhhCh
Q 045752 159 NGDGNNTTPLDRNSIDLFDNHYFQNLI-NNKG-------------------LLSSDQILYSSDEAKSTTESLVESYSSNS 218 (258)
Q Consensus 159 ~~~~~~~~~~d~~tp~~fDn~Yy~~l~-~~~g-------------------ll~sD~~L~~d~~~~~~t~~~V~~yA~d~ 218 (258)
.+++| .||.+|||+||++++ .+.+ +|+||++|+.|+ +|+.+|++||.||
T Consensus 188 ------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~----~T~~~v~~fa~dq 256 (328)
T cd00692 188 ------GTPFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP----RTACEWQSFVNNQ 256 (328)
T ss_pred ------CCCCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCC----cHHHHHHHHhcCH
Confidence 24677 699999999999987 4554 499999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccccc
Q 045752 219 NLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVNSL 255 (258)
Q Consensus 219 ~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n~~ 255 (258)
++|+++|++||+||++|||. ...+.+|+.|+..
T Consensus 257 ~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~ 289 (328)
T cd00692 257 AKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPP 289 (328)
T ss_pred HHHHHHHHHHHHHHHcCCCC----cchhccCcccCCC
Confidence 99999999999999999986 2367799999853
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.2e-53 Score=397.67 Aligned_cols=225 Identities=21% Similarity=0.295 Sum_probs=201.4
Q ss_pred CCC-ceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcc
Q 045752 1 GCD-ASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVA 79 (258)
Q Consensus 1 GcD-aSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s 79 (258)
|++ |+|++. +|++++.|.|+.+++.+|++||+++. ..||+||+|+||+.+|||.+|||.|+|.+||.|...+
T Consensus 92 G~ngg~iRf~---pe~~~~~N~gL~~a~~~L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~ 164 (409)
T cd00649 92 GAGTGQQRFA---PLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEP 164 (409)
T ss_pred CCCCCccccc---cccCcHhhhhHHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCC
Confidence 676 899997 79999999988899999999999973 4699999999999999999999999999999999754
Q ss_pred cc--------------------------------------cCCCCCCCCCCCHHHHHHHHHHcCCCccchhhh-cccccc
Q 045752 80 NQ--------------------------------------TGANALPSPFEGLNILTAKFAAVGLNIKDLVSL-SGAHTI 120 (258)
Q Consensus 80 ~~--------------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaL-sGaHti 120 (258)
.. ..+.+||+|..++.+|++.|.+|||+++||||| +|||||
T Consensus 165 ~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTi 244 (409)
T cd00649 165 DEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTF 244 (409)
T ss_pred ccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcce
Confidence 31 112279999999999999999999999999999 599999
Q ss_pred cccccccccccccCCCCCCCCCCCCCHHHHHHHH--hhcCC--CCCCCCCCCC---CCCCCccchHHHHHHhh-------
Q 045752 121 GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQ--SLCAN--GDGNNTTPLD---RNSIDLFDNHYFQNLIN------- 186 (258)
Q Consensus 121 G~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~--~~c~~--~~~~~~~~~d---~~tp~~fDn~Yy~~l~~------- 186 (258)
|++||..|..||. +||.+++.|++.|+ ..||. ++++..+.+| ..||.+|||+||++|++
T Consensus 245 GkaHc~~~~~rlg-------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~ 317 (409)
T cd00649 245 GKTHGAGPASHVG-------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTK 317 (409)
T ss_pred eecCcccccccCC-------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceecc
Confidence 9999999999982 59999999999996 89993 3334456788 47999999999999998
Q ss_pred -----------------------------ccCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHh--hcC
Q 045752 187 -----------------------------NKGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKM--GNV 235 (258)
Q Consensus 187 -----------------------------~~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km--~~l 235 (258)
+.+||+||++|+.|| +++++|++||+|+++||++|++||.|| ..+
T Consensus 318 ~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp----~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdm 393 (409)
T cd00649 318 SPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDP----EYEKISRRFLENPDEFADAFAKAWFKLTHRDM 393 (409)
T ss_pred CCCCcccccccCccccccCCCccccccccCcccchhhHhhhcCc----cHHHHHHHHhcCHHHHHHHHHHHHHHHccccC
Confidence 458999999999999 999999999999999999999999999 689
Q ss_pred CCCCCCCC
Q 045752 236 SPLTGTNG 243 (258)
Q Consensus 236 gv~tg~~G 243 (258)
|+++...|
T Consensus 394 gp~~~~~g 401 (409)
T cd00649 394 GPKSRYLG 401 (409)
T ss_pred CchhhhcC
Confidence 99987666
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.2e-50 Score=398.82 Aligned_cols=225 Identities=21% Similarity=0.271 Sum_probs=198.4
Q ss_pred CC-CceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcc
Q 045752 1 GC-DASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVA 79 (258)
Q Consensus 1 Gc-DaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s 79 (258)
|| .|+|++. +|++++.|.++.+++.+|++||++ ||+.|||||||+|||++||+.+|||.|+|.+||+|+..+
T Consensus 102 Ga~gg~iRf~---P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~ 174 (716)
T TIGR00198 102 GAATGNQRFA---PLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEP 174 (716)
T ss_pred CCCCCceecc---cccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCc
Confidence 66 5899998 799999999888999999999997 677899999999999999999999999999999999432
Q ss_pred c-------------------------------------ccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhc-cccccc
Q 045752 80 N-------------------------------------QTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLS-GAHTIG 121 (258)
Q Consensus 80 ~-------------------------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG 121 (258)
. +..+.++|.|..++.+|++.|.+|||+++|||||+ ||||||
T Consensus 175 ~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiG 254 (716)
T TIGR00198 175 DKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVG 254 (716)
T ss_pred ccccccccccchhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceecc
Confidence 1 11122699999999999999999999999999996 999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcC--CC--CCCCCCCCC---CCCCCccchHHHHHHhhc-------
Q 045752 122 FAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA--NG--DGNNTTPLD---RNSIDLFDNHYFQNLINN------- 187 (258)
Q Consensus 122 ~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~--~~--~~~~~~~~d---~~tp~~fDn~Yy~~l~~~------- 187 (258)
++||.+|..|| | +||++++.|++.|++.|| .+ .++..+.+| ..||.+|||+||++|+++
T Consensus 255 kaHc~s~~~rl----g---~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s 327 (716)
T TIGR00198 255 KCHGAGPAELI----G---PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKS 327 (716)
T ss_pred ccCCCcccccC----C---CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeec
Confidence 99999999997 2 799999999999999998 22 233356787 469999999999999975
Q ss_pred ---------------------------cCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhh--cCCCC
Q 045752 188 ---------------------------KGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMG--NVSPL 238 (258)
Q Consensus 188 ---------------------------~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~--~lgv~ 238 (258)
.++|.||++|..|| +++++|++||+|++.|+++|++||.||+ ++|++
T Consensus 328 ~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp----~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~ 403 (716)
T TIGR00198 328 PAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDP----EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPK 403 (716)
T ss_pred CCCCceeeecccccccccccccccccccCccchhHHhccCc----cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCch
Confidence 68899999999999 9999999999999999999999999999 57766
Q ss_pred CCCCC
Q 045752 239 TGTNG 243 (258)
Q Consensus 239 tg~~G 243 (258)
....|
T Consensus 404 ~~y~g 408 (716)
T TIGR00198 404 SRYIG 408 (716)
T ss_pred hhhcC
Confidence 54443
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.4e-50 Score=362.02 Aligned_cols=192 Identities=35% Similarity=0.509 Sum_probs=176.0
Q ss_pred CCCceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh--CCCCceecCCCCCCCc
Q 045752 1 GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLS--GGPTWKVLLGRRDGLV 78 (258)
Q Consensus 1 GcDaSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~--GGP~~~v~~GR~D~~~ 78 (258)
||||||+++ +|+++|+|.++.+++++|+.||.+++. |++|||||||+||+++||+.+ |||.|+|++||+|+..
T Consensus 41 g~dgsi~~~---~e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~ 115 (255)
T cd00314 41 GADGSIRFE---PELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATE 115 (255)
T ss_pred CCCceEecc---ccccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCch
Confidence 899999998 599999999778999999999999988 889999999999999999999 9999999999999996
Q ss_pred cc--ccCCC-CCCCCCCCHHHHHHHHHHcCCCccchhhhc-ccccc-cccccccccccccCCCCCCCCCCCCCHHHHHHH
Q 045752 79 AN--QTGAN-ALPSPFEGLNILTAKFAAVGLNIKDLVSLS-GAHTI-GFAKCAFFSNRLSNFSGTGAPDATMDTSLVSEL 153 (258)
Q Consensus 79 s~--~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHti-G~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L 153 (258)
+. ...+. .+|.+..++.++++.|+++||+++|||||+ |+||+ |++||..+..|+.
T Consensus 116 ~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~~-------------------- 175 (255)
T cd00314 116 PDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEGS-------------------- 175 (255)
T ss_pred hhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCcccC--------------------
Confidence 63 22344 788888899999999999999999999999 99999 9999998876641
Q ss_pred HhhcCCCCCCCCCCCCCCCCCccchHHHHHHhhcc----------------CccccchhhccCCccchhHHHHHHHHhhC
Q 045752 154 QSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNK----------------GLLSSDQILYSSDEAKSTTESLVESYSSN 217 (258)
Q Consensus 154 ~~~c~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~----------------gll~sD~~L~~d~~~~~~t~~~V~~yA~d 217 (258)
.++..||.+|||+||++++.++ ++|.||++|+.|+ +|+.+|++||.|
T Consensus 176 -------------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~----~t~~~v~~ya~~ 238 (255)
T cd00314 176 -------------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDS----ETRALVERYASD 238 (255)
T ss_pred -------------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCH----hHHHHHHHHHhC
Confidence 1234799999999999999988 8999999999999 999999999999
Q ss_pred hHHHHHHHHHHHHHhhc
Q 045752 218 SNLFFANFVNSMIKMGN 234 (258)
Q Consensus 218 ~~~F~~~Fa~A~~Km~~ 234 (258)
+++|+++|++||.||++
T Consensus 239 ~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 239 QEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999985
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.4e-48 Score=380.76 Aligned_cols=225 Identities=22% Similarity=0.292 Sum_probs=198.1
Q ss_pred CCC-ceeecCCCcccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcc
Q 045752 1 GCD-ASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVA 79 (258)
Q Consensus 1 GcD-aSill~~~~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s 79 (258)
||+ |+|++. +|++++.|.++.+++.+|++||+++. ..||+||+|+||+.+|||.+|||.|+|.+||.|...+
T Consensus 104 Gangg~iRf~---pe~~w~~N~gL~ka~~~L~pik~ky~----~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~ 176 (726)
T PRK15061 104 GAGGGQQRFA---PLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEP 176 (726)
T ss_pred CCCCCcccCc---ccccchhhhhHHHHHHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCC
Confidence 675 899997 79999999988899999999999973 4699999999999999999999999999999998654
Q ss_pred cc---------------------------------------cCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhc-cccc
Q 045752 80 NQ---------------------------------------TGANALPSPFEGLNILTAKFAAVGLNIKDLVSLS-GAHT 119 (258)
Q Consensus 80 ~~---------------------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHt 119 (258)
.. ..++++|+|..++.+|++.|.+|||+++|||||+ ||||
T Consensus 177 ~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT 256 (726)
T PRK15061 177 EEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHT 256 (726)
T ss_pred ccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCce
Confidence 32 1112589999999999999999999999999995 9999
Q ss_pred ccccccccccccccCCCCCCCCCCCCCHHHHHHHH--hhcCC--CCCCCCCCCC---CCCCCccchHHHHHHhhc-----
Q 045752 120 IGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQ--SLCAN--GDGNNTTPLD---RNSIDLFDNHYFQNLINN----- 187 (258)
Q Consensus 120 iG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~--~~c~~--~~~~~~~~~d---~~tp~~fDn~Yy~~l~~~----- 187 (258)
||++||..|..|| .+||.+++.|++.|. +.||. ++++..+.+| ..||.+|||+||++|+.+
T Consensus 257 ~GkaHca~~~~rl-------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~ 329 (726)
T PRK15061 257 FGKTHGAGDASHV-------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELT 329 (726)
T ss_pred eeeCCCcCccccc-------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceec
Confidence 9999999999997 269999999999985 89993 3445566788 469999999999999985
Q ss_pred -------------------------------cCccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc--
Q 045752 188 -------------------------------KGLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGN-- 234 (258)
Q Consensus 188 -------------------------------~gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~-- 234 (258)
.+||+||++|+.|| +++++|++||+|+++|+++|++||.||++
T Consensus 330 ~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP----~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrd 405 (726)
T PRK15061 330 KSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDP----EYEKISRRFLENPEEFADAFARAWFKLTHRD 405 (726)
T ss_pred cCCCccccccccCccccccCCcccccccccCcccccccHHhhcCC----cHHHHHHHHhcCHHHHHHHHHHHHHHHcccC
Confidence 58999999999999 99999999999999999999999999955
Q ss_pred CCCCCCCCC
Q 045752 235 VSPLTGTNG 243 (258)
Q Consensus 235 lgv~tg~~G 243 (258)
+|+++...|
T Consensus 406 mgp~~ry~g 414 (726)
T PRK15061 406 MGPKSRYLG 414 (726)
T ss_pred CCchhhhcC
Confidence 777665444
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=9.9e-42 Score=302.98 Aligned_cols=189 Identities=23% Similarity=0.331 Sum_probs=150.3
Q ss_pred CCCceeecCCCccccc-ccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcc
Q 045752 1 GCDASVLLDGSDSEKF-AAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVA 79 (258)
Q Consensus 1 GcDaSill~~~~~E~~-~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s 79 (258)
||||||+++...+|+. .+.|. ++++|+.|+. ..||||||||||+++||+.||||.|+|++||+|+..+
T Consensus 64 GcDgSIlle~~~~En~G~~~n~-~l~~~~~i~~----------~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s 132 (264)
T cd08201 64 GLDASIQYELDRPENIGSGFNT-TLNFFVNFYS----------PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEA 132 (264)
T ss_pred CCCcceeecCCChhhccCchhh-ccccceeecc----------CccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccc
Confidence 8999999974444554 23332 4555554432 1699999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhcc-cccccccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcC
Q 045752 80 NQTGANALPSPFEGLNILTAKFAAVGLNIKDLVSLSG-AHTIGFAKCAFFSNRLSNFSGTGAPDATMDTSLVSELQSLCA 158 (258)
Q Consensus 80 ~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsG-aHtiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~c~ 158 (258)
.+. +||.|+.++++|++.|++|||+.+|||+|+| |||||++||..|.+++-. | +
T Consensus 133 ~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~--g------~-------------- 187 (264)
T cd08201 133 GQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPP--G------S-------------- 187 (264)
T ss_pred ccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCC--c------c--------------
Confidence 643 6999999999999999999999999999995 999999999988877421 0 0
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHhhcc--C--------ccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHH
Q 045752 159 NGDGNNTTPLDRNSIDLFDNHYFQNLINNK--G--------LLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNS 228 (258)
Q Consensus 159 ~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~--g--------ll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A 228 (258)
..+...++| .||.+|||+||.+++.+. + .+.||..++..+ +|++ ++..| +++.|.+.++..
T Consensus 188 --~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d-~n~t----~~~l~-~~~~f~~~c~~~ 258 (264)
T cd08201 188 --VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSD-GNVT----MNELA-SPDTFQKTCADI 258 (264)
T ss_pred --ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecC-ccHH----HHHhc-ChHHHHHHHHHH
Confidence 001134566 699999999999999864 2 357999999876 3434 45556 799999999999
Q ss_pred HHHhhc
Q 045752 229 MIKMGN 234 (258)
Q Consensus 229 ~~Km~~ 234 (258)
++||++
T Consensus 259 ~~~mi~ 264 (264)
T cd08201 259 LQRMID 264 (264)
T ss_pred HHHHhC
Confidence 999985
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=6.3e-37 Score=275.40 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=157.3
Q ss_pred CCCce-eecCCCcccccccCCCC--chhhHHHHHHHHHHHHhc-CC-CCccHHHHHHHHHHHHHHHhCC-----CCceec
Q 045752 1 GCDAS-VLLDGSDSEKFAAPNRN--SARGFEVIDAIKTAVEGQ-CS-GVVSCADILAIAARDSVLLSGG-----PTWKVL 70 (258)
Q Consensus 1 GcDaS-ill~~~~~E~~~~~N~~--~~~g~~~i~~iK~~l~~~-~p-~~VS~ADiialAa~~Av~~~GG-----P~~~v~ 70 (258)
||+|+ |.|. +|++++.|.+ +.+.+.++++||+++... .+ ..||+||+|+||+.+|||.+|| |.|+|.
T Consensus 52 GaNGariRl~---pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~ 128 (297)
T cd08200 52 GANGARIRLA---PQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFT 128 (297)
T ss_pred CCCcccccCc---cccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccC
Confidence 78899 8887 7999999998 778999999999998532 12 2599999999999999999999 999999
Q ss_pred CCCCCCCcccccCC--C-CCCCCCC------------CHHHHHHHHHHcCCCccchhhhcccc-cccccccccccccccC
Q 045752 71 LGRRDGLVANQTGA--N-ALPSPFE------------GLNILTAKFAAVGLNIKDLVSLSGAH-TIGFAKCAFFSNRLSN 134 (258)
Q Consensus 71 ~GR~D~~~s~~~~~--~-~lP~p~~------------~~~~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~rl~~ 134 (258)
+||.|...+..... . .+|.++. ..+.|++.|.+|||+++|||||+||| ++|+.|..+
T Consensus 129 pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s------- 201 (297)
T cd08200 129 PGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS------- 201 (297)
T ss_pred CCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC-------
Confidence 99999987532111 1 2353322 34789999999999999999999997 699887431
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHhhcc--------------------C-----
Q 045752 135 FSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNK--------------------G----- 189 (258)
Q Consensus 135 f~g~~~~dp~~d~~~~~~L~~~c~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~--------------------g----- 189 (258)
+.|. + + .+|.+|||.||++|++.. |
T Consensus 202 ~~G~------------------------w--T----~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~ 251 (297)
T cd08200 202 KHGV------------------------F--T----DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWT 251 (297)
T ss_pred CCCC------------------------C--c----CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeec
Confidence 1121 1 1 589999999999999520 1
Q ss_pred ccccchhhccCCccchhHHHHHHHHhhC--hHHHHHHHHHHHHHhhcCC
Q 045752 190 LLSSDQILYSSDEAKSTTESLVESYSSN--SNLFFANFVNSMIKMGNVS 236 (258)
Q Consensus 190 ll~sD~~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~A~~Km~~lg 236 (258)
++.+|++|..|+ +.|++|+.||+| ++.||+||++||.||+++.
T Consensus 252 ~t~~Dl~l~sd~----~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 252 ATRVDLVFGSNS----ELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred cChhhhhhccCH----HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 267899999999 999999999998 9999999999999999975
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.97 E-value=1.2e-31 Score=263.36 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=157.3
Q ss_pred CCCce-eecCCCcccccccCCC--CchhhHHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHh---CC--CCceec
Q 045752 1 GCDAS-VLLDGSDSEKFAAPNR--NSARGFEVIDAIKTAVEGQC--SGVVSCADILAIAARDSVLLS---GG--PTWKVL 70 (258)
Q Consensus 1 GcDaS-ill~~~~~E~~~~~N~--~~~~g~~~i~~iK~~l~~~~--p~~VS~ADiialAa~~Av~~~---GG--P~~~v~ 70 (258)
|++|+ |+|. +|++++.|. ++.+.+.+|++||+++.... ...||+||+|+||+.+|||.+ || |.|+|.
T Consensus 477 GaNGarIRl~---Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~ 553 (726)
T PRK15061 477 GANGARIRLA---PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFT 553 (726)
T ss_pred CCCccceecc---cccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcC
Confidence 78898 9997 799999999 77889999999999996432 135999999999999999998 68 999999
Q ss_pred CCCCCCCcccccCCC----CCCCCC------------CCHHHHHHHHHHcCCCccchhhhcccc-ccccccccccccccc
Q 045752 71 LGRRDGLVANQTGAN----ALPSPF------------EGLNILTAKFAAVGLNIKDLVSLSGAH-TIGFAKCAFFSNRLS 133 (258)
Q Consensus 71 ~GR~D~~~s~~~~~~----~lP~p~------------~~~~~l~~~F~~~Gl~~~e~VaLsGaH-tiG~~hc~~f~~rl~ 133 (258)
+||.|+..... +++ .+|..+ ...+.|++.|.+|||+++|||||+||| ++|+.|..++
T Consensus 554 pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~----- 627 (726)
T PRK15061 554 PGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK----- 627 (726)
T ss_pred CCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCC-----
Confidence 99999987532 221 346533 123789999999999999999999997 7888873311
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHhhcc--------------------C---c
Q 045752 134 NFSGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNK--------------------G---L 190 (258)
Q Consensus 134 ~f~g~~~~dp~~d~~~~~~L~~~c~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~--------------------g---l 190 (258)
.|. ++ .+|.+|||.||++|++.. | +
T Consensus 628 --~G~--------------------------~T----~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~ 675 (726)
T PRK15061 628 --HGV--------------------------FT----DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKW 675 (726)
T ss_pred --CCC--------------------------Cc----CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceee
Confidence 110 11 489999999999999521 1 2
Q ss_pred --cccchhhccCCccchhHHHHHHHHhhC--hHHHHHHHHHHHHHhhcCCC
Q 045752 191 --LSSDQILYSSDEAKSTTESLVESYSSN--SNLFFANFVNSMIKMGNVSP 237 (258)
Q Consensus 191 --l~sD~~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~A~~Km~~lgv 237 (258)
+.+|.+|..|+ +.|++|+.||+| +++||+||++||.|+++++-
T Consensus 676 ~~t~~Dlvfgsds----~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 676 TATRVDLVFGSNS----QLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred ccChhheecccCH----HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 47899999999 999999999999 99999999999999999984
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=1e-31 Score=265.17 Aligned_cols=189 Identities=22% Similarity=0.330 Sum_probs=154.6
Q ss_pred CCCce-eecCCCcccccccCC--CCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh---CCC--CceecCC
Q 045752 1 GCDAS-VLLDGSDSEKFAAPN--RNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLS---GGP--TWKVLLG 72 (258)
Q Consensus 1 GcDaS-ill~~~~~E~~~~~N--~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~---GGP--~~~v~~G 72 (258)
|++|+ |+|. +|++++.| .++.+.+.+|++||+++.. ..||+||+|+||+.+|||.+ ||| .|+|.+|
T Consensus 470 GaNGariRl~---pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pG 543 (716)
T TIGR00198 470 GANGARIRLE---PQKNWPVNEPTRLAKVLAVLEKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPG 543 (716)
T ss_pred CCCcceeecc---hhcCcccCCHHHHHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCC
Confidence 78998 9997 89999999 7788999999999999852 26999999999999999999 898 5799999
Q ss_pred CCCCCcccccCCC-CC---CCC------------CCCHHHHHHHHHHcCCCccchhhhccc-ccccccccccccccccCC
Q 045752 73 RRDGLVANQTGAN-AL---PSP------------FEGLNILTAKFAAVGLNIKDLVSLSGA-HTIGFAKCAFFSNRLSNF 135 (258)
Q Consensus 73 R~D~~~s~~~~~~-~l---P~p------------~~~~~~l~~~F~~~Gl~~~e~VaLsGa-HtiG~~hc~~f~~rl~~f 135 (258)
|.|+..... +++ .+ |.+ ......|++.|.+|||+++|||||+|| |++|+.|..+ +
T Consensus 544 R~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~ 615 (716)
T TIGR00198 544 RVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------K 615 (716)
T ss_pred CCccccCCC-CccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------C
Confidence 999986642 222 11 211 123466889999999999999999998 5999998532 1
Q ss_pred CCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHhhcc-----------------------Ccc-
Q 045752 136 SGTGAPDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNK-----------------------GLL- 191 (258)
Q Consensus 136 ~g~~~~dp~~d~~~~~~L~~~c~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~-----------------------gll- 191 (258)
.|. +. .+|.+|||.||++|++.. .++
T Consensus 616 ~G~-----------------------------~T-~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~ 665 (716)
T TIGR00198 616 HGV-----------------------------FT-DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTA 665 (716)
T ss_pred CCC-----------------------------Cc-CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeecc
Confidence 121 11 489999999999999721 122
Q ss_pred -ccchhhccCCccchhHHHHHHHHhhCh--HHHHHHHHHHHHHhhcCCC
Q 045752 192 -SSDQILYSSDEAKSTTESLVESYSSNS--NLFFANFVNSMIKMGNVSP 237 (258)
Q Consensus 192 -~sD~~L~~d~~~~~~t~~~V~~yA~d~--~~F~~~Fa~A~~Km~~lgv 237 (258)
.+|.+|..|+ +.|++|+.||+|+ +.||+||++||.||++++-
T Consensus 666 t~~Dl~~~sd~----~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 666 TRVDLVFGSNS----ILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred ChhheeeccCH----HHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 6799999999 9999999999997 8999999999999999985
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=251.92 Aligned_cols=211 Identities=21% Similarity=0.275 Sum_probs=177.8
Q ss_pred cccccccCCCCchhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhCCCCceecCCCCCCCcccc----------
Q 045752 12 DSEKFAAPNRNSARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQ---------- 81 (258)
Q Consensus 12 ~~E~~~~~N~~~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~---------- 81 (258)
.++.++|.|.++.+++.+|++||+++ +..||+||+|+|++.+|++.+|++.|.|..||.|...+..
T Consensus 126 aPlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~w 201 (730)
T COG0376 126 APLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTW 201 (730)
T ss_pred ccccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccc
Confidence 37999999999999999999999997 4579999999999999999999999999999999988765
Q ss_pred ----------------------------cCCCCCCCCCCCHHHHHHHHHHcCCCccchhhhc-ccccccccccccccccc
Q 045752 82 ----------------------------TGANALPSPFEGLNILTAKFAAVGLNIKDLVSLS-GAHTIGFAKCAFFSNRL 132 (258)
Q Consensus 82 ----------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GaHtiG~~hc~~f~~rl 132 (258)
..+++.|+|..+..++++.|++|+|+++|+|||+ ||||+|++|...-...+
T Consensus 202 l~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v 281 (730)
T COG0376 202 LGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV 281 (730)
T ss_pred cccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc
Confidence 2233689999999999999999999999999998 79999999976533222
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHh--hcC--CCCCCCCCCCC---CCCCCccchHHHHHHhhcc-----------------
Q 045752 133 SNFSGTGAPDATMDTSLVSELQS--LCA--NGDGNNTTPLD---RNSIDLFDNHYFQNLINNK----------------- 188 (258)
Q Consensus 133 ~~f~g~~~~dp~~d~~~~~~L~~--~c~--~~~~~~~~~~d---~~tp~~fDn~Yy~~l~~~~----------------- 188 (258)
+++|.-.+--.+.|.+ .|. .+.++....+. ..||++|||+||.+|+...
T Consensus 282 -------g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~ 354 (730)
T COG0376 282 -------GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKS 354 (730)
T ss_pred -------CCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccC
Confidence 3577777777777754 444 23344444443 2489999999999999641
Q ss_pred ------------------CccccchhhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC
Q 045752 189 ------------------GLLSSDQILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSP 237 (258)
Q Consensus 189 ------------------gll~sD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv 237 (258)
.||.+|.+|..|| ..+.+.++|.+|++.|.+.|++||.||.+-+.
T Consensus 355 ~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP----~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 355 AAAETIPDAHDPSKKHGPMMLTTDLALRFDP----EYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred ccccCCCCCCCcccccCceeeccchhhhcCh----HHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 4899999999999 99999999999999999999999999997553
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.6e-12 Score=124.28 Aligned_cols=183 Identities=22% Similarity=0.331 Sum_probs=130.8
Q ss_pred eeecCCCcccccccCCCC--chhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh---CCCC--ceecCCCCCCC
Q 045752 5 SVLLDGSDSEKFAAPNRN--SARGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSVLLS---GGPT--WKVLLGRRDGL 77 (258)
Q Consensus 5 Sill~~~~~E~~~~~N~~--~~~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av~~~---GGP~--~~v~~GR~D~~ 77 (258)
=|.|. +.++++.|.. +.+.+.+++.|++.+.+ .||.||+|+|++..|||.+ .|-. ++|.+||.|+.
T Consensus 492 RirLa---PqkdWevN~P~~l~kvl~~le~iq~~fnk----kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~ 564 (730)
T COG0376 492 RIRLA---PQKDWEVNQPAELAKVLAVLEKIQKEFNK----KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDAS 564 (730)
T ss_pred eEeec---ccccCCCCCHHHHHHHHHHHHHHHHHhcC----ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccc
Confidence 46676 7899999974 44788999999999873 6999999999999999876 5544 56789999997
Q ss_pred cccccCCC--CC--CCC-----------CCCH-HHHHHHHHHcCCCccchhhhccccc-ccccccccccccccCCCCCCC
Q 045752 78 VANQTGAN--AL--PSP-----------FEGL-NILTAKFAAVGLNIKDLVSLSGAHT-IGFAKCAFFSNRLSNFSGTGA 140 (258)
Q Consensus 78 ~s~~~~~~--~l--P~p-----------~~~~-~~l~~~F~~~Gl~~~e~VaLsGaHt-iG~~hc~~f~~rl~~f~g~~~ 140 (258)
..... ++ .+ |-. .-+. .-|++.-...+|+..||++|+||-- +|. |+.|+
T Consensus 565 qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~-----------n~g~s-- 630 (730)
T COG0376 565 QEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS-- 630 (730)
T ss_pred hhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeecc-----------CCCCC--
Confidence 65322 21 11 211 1123 3456777789999999999998742 332 22221
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHhhcc--------------------Cc-----cccch
Q 045752 141 PDATMDTSLVSELQSLCANGDGNNTTPLDRNSIDLFDNHYFQNLINNK--------------------GL-----LSSDQ 195 (258)
Q Consensus 141 ~dp~~d~~~~~~L~~~c~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~--------------------gl-----l~sD~ 195 (258)
.-.+.. ..|.++.|.||.||+... |- -..|.
T Consensus 631 ----------------------~~GVfT--~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDL 686 (730)
T COG0376 631 ----------------------KHGVFT--DRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDL 686 (730)
T ss_pred ----------------------ccceec--cCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeE
Confidence 112322 368888999999998631 11 13555
Q ss_pred hhccCCccchhHHHHHHHHhhC--hHHHHHHHHHHHHHhhcCC
Q 045752 196 ILYSSDEAKSTTESLVESYSSN--SNLFFANFVNSMIKMGNVS 236 (258)
Q Consensus 196 ~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~A~~Km~~lg 236 (258)
.+-.++ ..|.+.+-||.+ ++.|.+||+.||.|..++.
T Consensus 687 vfGsns----~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 687 VFGSNS----ELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred EecCcH----HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 554555 999999999985 8999999999999998876
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=85.21 E-value=10 Score=35.61 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCCC-CCC---CCHHHHHHHHHHcCCCc----------
Q 045752 45 VSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANALP-SPF---EGLNILTAKFAAVGLNI---------- 108 (258)
Q Consensus 45 VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~lP-~p~---~~~~~l~~~F~~~Gl~~---------- 108 (258)
|.|-=.+.+....|+ ..+|..+|..++||.+-+.-.+......+ ... .++.++.++|++.|+..
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 443333344433333 33588889999999865432211111122 111 34677888898888754
Q ss_pred cchhhhccccc
Q 045752 109 KDLVSLSGAHT 119 (258)
Q Consensus 109 ~e~VaLsGaHt 119 (258)
+|+..|.|+|.
T Consensus 241 ~qi~~laG~D~ 251 (333)
T PTZ00411 241 GEILELAGCDK 251 (333)
T ss_pred HHHHHHHCCCE
Confidence 45555555553
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=79.77 E-value=24 Score=33.88 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCCCCCC----CCHHHHHHHHHHcCCCc
Q 045752 45 VSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANALPSPF----EGLNILTAKFAAVGLNI 108 (258)
Q Consensus 45 VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~ 108 (258)
|.|-=.+.+....|+ ..+|..+|..++||.|-+.-.......+|... ..+.++.++|++.|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 444444444444443 33588899999999877432211111244332 24677888888888754
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=70.96 E-value=50 Score=30.84 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCCC----CCCCCHHHHHHHHHHcCCCcc
Q 045752 45 VSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANALP----SPFEGLNILTAKFAAVGLNIK 109 (258)
Q Consensus 45 VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 109 (258)
|+|-=.+.+....|+ ..+|..+|..++||.+-+.-........+ ++-..+.++.++|++.|+..+
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 333333344333333 34588899999999876422111000111 122457788889998888643
No 22
>PRK12346 transaldolase A; Provisional
Probab=59.20 E-value=9.3 Score=35.61 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCCCC-C---CCCHHHHHHHHHHcCCCc
Q 045752 45 VSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANALPS-P---FEGLNILTAKFAAVGLNI 108 (258)
Q Consensus 45 VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~-p---~~~~~~l~~~F~~~Gl~~ 108 (258)
|+|-=.+.+....|+ ..+|..+|..++||.|-+.-.......++. . -..+.++.++|++.|+..
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T 219 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYET 219 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCc
Confidence 555444455444444 345889999999998864322110001211 1 234678888898888753
No 23
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=57.89 E-value=9.4 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 045752 220 LFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVN 253 (258)
Q Consensus 220 ~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n 253 (258)
.....|..||.||+.||-. ...-| +||.|-
T Consensus 2 ~m~~~F~~am~KlavLG~d--~~~Li--DCSdVI 31 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD--RSDLI--DCSDVI 31 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS---GGGSE--E-GGGS
T ss_pred hHHHHHHHHHHHHHHhcCC--hhhcc--cchhhc
Confidence 3567899999999999952 22233 677653
No 24
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=51.60 E-value=17 Score=33.90 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHH--HhCCCCceecCCCCCCCcccccCCCCCCC----CCCCHHHHHHHHHHcCCCccch
Q 045752 45 VSCADILAIAARDSVL--LSGGPTWKVLLGRRDGLVANQTGANALPS----PFEGLNILTAKFAAVGLNIKDL 111 (258)
Q Consensus 45 VS~ADiialAa~~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~e~ 111 (258)
|+|-=.+.+....|+. .+|..++..++||.|-..-........+. +-..+.++.++|++.|+..+-|
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm 221 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM 221 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE
Confidence 4444444444444443 34888899999998764221100001111 1234778888999989875433
No 25
>PRK05269 transaldolase B; Provisional
Probab=38.00 E-value=32 Score=32.02 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCC-C---CCCCCHHHHHHHHHHcCCCcc
Q 045752 45 VSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANAL-P---SPFEGLNILTAKFAAVGLNIK 109 (258)
Q Consensus 45 VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~l-P---~p~~~~~~l~~~F~~~Gl~~~ 109 (258)
|+|-=.+.+....|+ ..+|..++..++||.|...-........ + ++-..+.++..+|++.|+..+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 444333344333333 3458889999999998642211000001 1 122357788889999998755
No 26
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.22 E-value=65 Score=26.09 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=36.1
Q ss_pred hHHHHHHhhccCccccch-hhccCCccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCC-CCCcccccccccc
Q 045752 178 NHYFQNLINNKGLLSSDQ-ILYSSDEAKSTTESLVESYSSNSNLFFANFVNSMIKMGNVSPLTG-TNGEIRKNCRAVN 253 (258)
Q Consensus 178 n~Yy~~l~~~~gll~sD~-~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg-~~GeiR~~C~~~n 253 (258)
..|++++.+...+..+-. -|+.+. .. +.||-.|-+||..-+.... ++||||+.-+.-|
T Consensus 44 k~~lreLVa~G~l~~~G~~GvF~se----qA--------------~~dw~~~~~~~~~~~~~~~~pdg~~rry~~~~n 103 (127)
T PF06163_consen 44 KRYLRELVARGDLYRHGRSGVFPSE----QA--------------RKDWDKARKKLVDPDLIWKLPDGEIRRYDRRQN 103 (127)
T ss_pred HHHHHHHHHcCCeEeCCCccccccH----HH--------------HHHHHHhHHhhccchhhhhCCCccccccccccc
Confidence 467777776554444444 444444 11 4567777788866555444 8999999766555
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=32.79 E-value=38 Score=30.42 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH--HHhCCCCceecCCCCCCCcccccCCCCC-CCCCC---CHHHHH
Q 045752 25 RGFEVIDAIKTAVEGQCSGVVSCADILAIAARDSV--LLSGGPTWKVLLGRRDGLVANQTGANAL-PSPFE---GLNILT 98 (258)
Q Consensus 25 ~g~~~i~~iK~~l~~~~p~~VS~ADiialAa~~Av--~~~GGP~~~v~~GR~D~~~s~~~~~~~l-P~p~~---~~~~l~ 98 (258)
.|+..+..++++ .|++-=.+.+....|+ ..+|..++.+++||.|...-.......+ |.... .+.++.
T Consensus 127 ~Gl~A~~~L~~~-------GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~ 199 (252)
T cd00439 127 EGIPAIKDLIAA-------GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAY 199 (252)
T ss_pred HHHHHHHHHHHC-------CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHH
Confidence 455555544432 2443333344444443 3358888999999998765422111111 11112 244666
Q ss_pred HHHHHcCCCcc
Q 045752 99 AKFAAVGLNIK 109 (258)
Q Consensus 99 ~~F~~~Gl~~~ 109 (258)
..|+..|...+
T Consensus 200 ~~~~~~~~~tk 210 (252)
T cd00439 200 KLYKQKFKKQR 210 (252)
T ss_pred HHHHHhCCCCe
Confidence 77777776544
No 28
>PRK01362 putative translaldolase; Provisional
Probab=31.11 E-value=27 Score=30.61 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=28.3
Q ss_pred hCCCCceecCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHHcCCCccchh
Q 045752 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDLV 112 (258)
Q Consensus 62 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~V 112 (258)
+|.-++..++||.|-..- ++..-+.++.+.++..|++.+=|+
T Consensus 121 aGa~yispyvgRi~d~g~---------dg~~~i~~~~~~~~~~~~~tkila 162 (214)
T PRK01362 121 AGATYVSPFVGRLDDIGT---------DGMELIEDIREIYDNYGFDTEIIA 162 (214)
T ss_pred cCCcEEEeecchHhhcCC---------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 466778999999876421 123446788888888887655443
No 29
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=29.72 E-value=27 Score=30.59 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=28.4
Q ss_pred hCCCCceecCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHHcCCCccch
Q 045752 62 SGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNIKDL 111 (258)
Q Consensus 62 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~ 111 (258)
+|.-++..++||.|-..- ++..-+.++.+.++..|++.+=|
T Consensus 121 aGa~yispyvgRi~d~g~---------dg~~~v~~~~~~~~~~~~~tkIl 161 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG---------DGMKLIEEVKTIFENHAPDTEVI 161 (213)
T ss_pred cCCCEEEeecchHHHcCC---------CHHHHHHHHHHHHHHcCCCCEEE
Confidence 476778999999876421 12234678888888888877633
No 30
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=24.96 E-value=36 Score=25.57 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=15.6
Q ss_pred HhhChHHHHHHHHHHHHHhh
Q 045752 214 YSSNSNLFFANFVNSMIKMG 233 (258)
Q Consensus 214 yA~d~~~F~~~Fa~A~~Km~ 233 (258)
|-..|+.||+.|+..+.|=.
T Consensus 38 Y~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 38 YNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CChHHHHHHHHHhhhhhHHH
Confidence 55568999999998887643
No 31
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=23.44 E-value=1.4e+02 Score=21.11 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=16.5
Q ss_pred CCCCccHHHHHHHHHHHHHHHhCC
Q 045752 41 CSGVVSCADILAIAARDSVLLSGG 64 (258)
Q Consensus 41 ~p~~VS~ADiialAa~~Av~~~GG 64 (258)
++..+|.||+..+....-+...+.
T Consensus 51 ~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 51 VGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp SBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred eccCCchhHHHHHHHHHHHHHhCC
Confidence 356799999998887766655433
No 32
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=21.17 E-value=1.5e+02 Score=22.13 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 045752 29 VIDAIKTAVEGQCSGVVSCADILAIAARDS 58 (258)
Q Consensus 29 ~i~~iK~~l~~~~p~~VS~ADiialAa~~A 58 (258)
+.+.+.+.++..-.+.||.+|+.++|--.|
T Consensus 50 V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 50 VMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 444444444434457899999999986544
Done!