Your job contains 1 sequence.
>045757
MILHRSSSMFHFYKLSSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRG
FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS
GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE
QVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVR
GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL
QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL
PINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF
GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT
DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR
AAKLGQPV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045757
(548 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202730 - symbol:EMB3108 "EMBRYO DEFECTIVE 310... 1621 1.2e-166 1
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 248 2.6e-35 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 230 3.6e-31 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 234 2.4e-29 2
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 210 8.2e-29 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 208 1.5e-28 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 210 2.1e-28 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 210 2.1e-28 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 210 2.8e-28 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 208 3.6e-28 2
DICTYBASE|DDB_G0269986 - symbol:DDB_G0269986 species:4468... 216 7.4e-28 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 195 1.3e-27 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 197 2.1e-27 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 193 2.5e-27 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 193 2.5e-27 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 212 2.5e-27 2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 193 3.3e-27 2
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 208 8.2e-27 2
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 192 8.4e-27 2
RGD|1311976 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box po... 198 1.1e-26 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 200 1.1e-26 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 200 1.1e-26 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 193 1.7e-26 2
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 192 2.2e-26 2
ASPGD|ASPL0000054300 - symbol:AN0583 species:162425 "Emer... 212 4.0e-26 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 187 4.1e-26 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 197 5.0e-26 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 207 5.3e-26 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 207 5.3e-26 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 196 6.3e-26 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 200 7.6e-26 2
UNIPROTKB|Q9NUL7 - symbol:DDX28 "Probable ATP-dependent R... 201 8.8e-26 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 187 1.0e-25 2
WB|WBGene00002244 - symbol:laf-1 species:6239 "Caenorhabd... 203 1.1e-25 2
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-... 206 1.5e-25 2
CGD|CAL0005900 - symbol:MAK5 species:5476 "Candida albica... 194 1.7e-25 2
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 186 2.3e-25 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 188 2.6e-25 2
UNIPROTKB|E2RKU0 - symbol:DDX28 "Uncharacterized protein"... 205 3.1e-25 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 186 3.2e-25 2
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 189 3.3e-25 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 206 3.3e-25 2
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 205 3.7e-25 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 201 4.4e-25 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 201 4.4e-25 2
FB|FBgn0034496 - symbol:CG9143 species:7227 "Drosophila m... 184 4.9e-25 4
DICTYBASE|DDB_G0280407 - symbol:ddx56 "DEAD/DEAH box heli... 236 5.2e-25 3
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 209 5.6e-25 2
UNIPROTKB|I3LB32 - symbol:DDX28 "Uncharacterized protein"... 204 9.1e-25 2
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 209 9.3e-25 2
MGI|MGI:1919236 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) bo... 191 9.4e-25 2
TIGR_CMR|GSU_0189 - symbol:GSU_0189 "ATP-dependent RNA he... 182 9.6e-25 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 184 1.0e-24 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 184 1.0e-24 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 188 1.1e-24 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 188 1.1e-24 2
UNIPROTKB|A7YWQ8 - symbol:DDX28 "Uncharacterized protein"... 191 1.2e-24 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 201 1.4e-24 2
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 187 1.4e-24 2
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 208 2.5e-24 2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 190 2.6e-24 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 193 2.8e-24 2
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 200 3.3e-24 2
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 200 3.3e-24 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 205 3.4e-24 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 205 3.4e-24 2
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 193 4.0e-24 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 201 4.4e-24 2
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 184 5.9e-24 2
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 184 5.9e-24 2
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 194 6.6e-24 2
DICTYBASE|DDB_G0283661 - symbol:ddx3 "DEAD/DEAH box helic... 185 6.9e-24 2
ASPGD|ASPL0000056064 - symbol:AN0204 species:162425 "Emer... 303 7.0e-24 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 190 7.8e-24 2
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 193 8.2e-24 2
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 193 8.3e-24 2
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 193 8.4e-24 2
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 193 8.5e-24 2
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 187 8.7e-24 2
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 184 9.4e-24 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 188 9.5e-24 2
UNIPROTKB|E1BXX5 - symbol:DDX59 "Uncharacterized protein"... 194 1.0e-23 2
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 189 1.1e-23 2
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 193 1.3e-23 2
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica... 188 1.3e-23 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 182 1.6e-23 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 182 1.6e-23 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 188 1.7e-23 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 174 1.8e-23 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 174 1.8e-23 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 177 1.8e-23 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 177 1.8e-23 2
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 190 1.8e-23 2
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 190 1.8e-23 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 186 1.9e-23 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 196 2.0e-23 2
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 185 2.2e-23 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 185 2.2e-23 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 185 2.2e-23 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 185 2.2e-23 2
WARNING: Descriptions of 749 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2202730 [details] [associations]
symbol:EMB3108 "EMBRYO DEFECTIVE 3108" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC005966 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF424570 EMBL:AY142022
EMBL:AJ010471 EMBL:Y11190 IPI:IPI00538336 PIR:B96624 PIR:T51346
RefSeq:NP_176207.1 UniGene:At.48 ProteinModelPortal:Q944S1
SMR:Q944S1 STRING:Q944S1 PaxDb:Q944S1 PRIDE:Q944S1
EnsemblPlants:AT1G59990.1 GeneID:842293 KEGG:ath:AT1G59990
KEGG:dosa:Os09t0383400-01 GeneFarm:939 TAIR:At1g59990
HOGENOM:HOG000265669 InParanoid:Q944S1 OMA:NVMLCEQ PhylomeDB:Q944S1
ProtClustDB:CLSN2679718 Genevestigator:Q944S1 GermOnline:AT1G59990
Uniprot:Q944S1
Length = 581
Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
Identities = 330/557 (59%), Positives = 410/557 (73%)
Query: 1 MILHRSSSMFHFYKLSS--PPKLXXXXXXXXXXXXXXXXXXXYPLRVRFLRLNQWKGRPF 58
MIL RS S+ H +SS P KL + R LN+ +
Sbjct: 1 MILSRSVSVLHLCGVSSSAPSKLLSQRFKVSFALAYGSS-----VSFRLSSLNRSDRKWV 55
Query: 59 RGFXXXXXXXSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
RGF +K G+ DTFFAD V+WKSLGLSD + AL +SGF RPS+ QA + +
Sbjct: 56 RGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSI 114
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178
LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+L
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML 174
Query: 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF 238
CEQVVRM N L ++G PL+R AVCG QGWP PD+IVSTPAALLNNI+PKR RR+EF
Sbjct: 175 CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEF 234
Query: 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+R VKYVVFDEADMLLCGSFQNQ+IRLINM RFDEKQ+SR+ +S + +P+E+D +S+ Q
Sbjct: 235 LRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEKQVSRLAKSNLGRPMEID-ASVPQI 293
Query: 299 DLQDEENLQ-DE-YISDEGNFEGDSD-VEGLTE----ETKSGSIKKKDWRRVRKNYQRSK 351
DL++E++ + DE IS+E + E + + ++ + + E ++GS KK WRRVRK Y RSK
Sbjct: 294 DLENEDDAEFDEGSISEEEDEEEEEEYLDDIAQMPSVEAEAGSDTKKGWRRVRKIYTRSK 353
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
QYIF+AATLP+NGKKTAG +LK MF DA W+SGN+LH ++PRLK+KW+EVTVD+QVDALI
Sbjct: 354 QYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQVDALI 413
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EAVK T RTMVFANTV+AV AV IL+ A I+CY YHK+ L+ERA L +F+
Sbjct: 414 EAVKNNNN--TNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFR 471
Query: 472 EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
E GGVFVCTDAAARG+D+PNVSHVIQADFA+SAVDFLHR+GRTARAGQYG VTSLYTE+N
Sbjct: 472 ETGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEAN 531
Query: 532 RDLVDTIRRAAKLGQPV 548
RDLV+ IR A K+GQPV
Sbjct: 532 RDLVEAIREAVKMGQPV 548
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 248 (92.4 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 64/207 (30%), Positives = 113/207 (54%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
+R K + Q + V AT+ + +K ++ + F + + + LH + +I+
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQK----LVDEEFQGIEHLRTSTLHKKIANARHDFIK 348
Query: 401 VTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
++ + +++AL++ ++ L A+ S+ MVF NT+++ AV L I YH ++
Sbjct: 349 LSGGEDKLEALLQVLEPSL---AKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVP 405
Query: 460 LEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
E+R + L F+++ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR
Sbjct: 406 AEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTAR 464
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
G G VTSL + ++ L I A +
Sbjct: 465 MGAKGKVTSLVSRKDQMLAARIEEAMR 491
Score = 210 (79.0 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 65/226 (28%), Positives = 113/226 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ- 172
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + +N K+ P R ++VLCP L EQV R+A ++S R++ V G
Sbjct: 173 ----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH---HARFRSILVSG 225
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSF 258
G Q + D++V TP +L +I+ V G + Y+V DEAD + F
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGN-----MVYGDIAYLVLDEADTMFDRGF 280
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
++ + + +++ L + N+ G + L ++ L DEE
Sbjct: 281 GPEIRKFLAPL--NQRAL-KTNDQGFQTVLVTATMTMAVQKLVDEE 323
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 230 (86.0 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 70/226 (30%), Positives = 118/226 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ + L++A E G+ PS +QA ++ L GKDV+ A+TGSGKT ++ +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + DSE + P P + VL P L Q+ AL AD +R +
Sbjct: 70 ALLEYVYDSEPKKG-RRPDPAFF-ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLV 124
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P VIV+TP L +++ + + + +KY+V DEAD LL F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSL---KSLKYLVLDEADRLLNEDF 181
Query: 259 Q---NQVIRLINM----FRFDE---KQLSRMNESGVEKPLEMDNSS 294
+ NQ++ I + F F K++ ++ + + P++++ +S
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
Score = 184 (69.8 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 39/106 (36%), Positives = 61/106 (57%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +M+F T D + +L++ G ++ +R L F+ + + VCTD A
Sbjct: 261 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 234 (87.4 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 68/188 (36%), Positives = 108/188 (57%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L+RA+ GF P+ +Q ++ +L G+DVV A TGSGKT ++++P+IE
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + L NSN+ RA L+L PN L Q V++ S G L R+VA+ G
Sbjct: 131 LKSTLA---NSNT-------RA--LILSPNRELALQTVKVVKDFS--KGTDL-RSVAIVG 175
Query: 206 G----QGWPI--GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G + + + GKPD++V+TP L+ K ++E + ++YVVFDEAD L F
Sbjct: 176 GVSLEEQFSLLSGKPDIVVATPGRFLHL---KVEMKLE-LSSIEYVVFDEADRLFEMGFA 231
Query: 260 NQVIRLIN 267
Q+ +++
Sbjct: 232 AQLTEILH 239
Score = 173 (66.0 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 47/117 (40%), Positives = 64/117 (54%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+E + E G+ S T+VF T V V+++L AG + L E R + NF
Sbjct: 334 LELALKGSESGSPDS-TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNF 392
Query: 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ K + V TD A+RGIDIP +++VI DF F+HRVGRTARAG+ G SL
Sbjct: 393 RLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSL 449
Score = 45 (20.9 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 379 ADWISGNYLHFHNPR---LKEKWIEVTVDTQVDALIEAVKER 417
AD NY H N R KE+ I + V++++ + +E K R
Sbjct: 790 ADKFRDNY-HKQNKRNREAKERGIGIKVNSELKSAVEIRKAR 830
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 210 (79.0 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 66/222 (29%), Positives = 114/222 (51%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ +GL + +A+E GF +P+ +Q ++ ++ GKDVV + TGSGKT ++++P+++K
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ T RA L++ P L Q ++ L G +R + G
Sbjct: 86 L-----------KRRDTTGIRA--LMVSPTRELALQTFKVVKELGRFTG---LRCACLVG 129
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + PD++++TP LL+ I + R+ +V+ YVVFDEAD L FQ
Sbjct: 130 GDQIEEQFSTIHENPDILLATPGRLLHVI-VEMDLRLSYVQ---YVVFDEADRLFEMGFQ 185
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
+Q+ + R E + + + + + K L + + LT P L
Sbjct: 186 DQLTETLK--RIPESRQTLLFSATLPKMLVDFAKAGLTDPML 225
Score = 194 (73.4 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 54/146 (36%), Positives = 75/146 (51%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
D ++ AL+ + R++ E +T+VF T+ V V IL AGI+C + L R
Sbjct: 248 DEKLFALLHLCR-RMD--RENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATAR 304
Query: 464 AKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+ F EK + V TD AARG+DIP + VI F A F+HRVGR ARAG+ G
Sbjct: 305 KMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGT 364
Query: 523 VTSLYTESNRDLVDTIRRAAKLGQPV 548
SL +N +L LG+P+
Sbjct: 365 AISLI--ANDELPYLTDLFMFLGKPI 388
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 208 (78.3 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 65/207 (31%), Positives = 104/207 (50%)
Query: 342 RVRKNYQRSKQ-YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
++ K R ++ Y+F +AT+ K A L+ P +S Y N LK+ +I
Sbjct: 210 KILKVIPRERRTYLF-SATMTKKVSKLERASLRD--PARVSVSSRYKTVDN--LKQHYIF 264
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V + L+ + E A S +VF T + +L+ G++ H +S
Sbjct: 265 VPNKYKETYLVYLLNEH----AGNS-AIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQ 319
Query: 461 EERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
E+R +L F+ K + VCTD AARG+DIP+V VI D + + D++HRVGRTARAG+
Sbjct: 320 EKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGR 379
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQ 546
G+ ++ T+ + + I A LG+
Sbjct: 380 SGIAITVVTQYDVEAYQKIE--ANLGK 404
Score = 185 (70.2 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 60/219 (27%), Positives = 113/219 (51%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+S L A + G+ +PS +Q A++ L GKDV+ AETGSGKT ++ +P+++
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D P LVL P L Q+ + AL + G L+ AV V
Sbjct: 105 SLL-----------DH---PQAFFCLVLTPTRELAFQIGQQFEALGSGIG--LIAAVIVG 148
Query: 205 G----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + P +IV+TP L+++++ + + + +K+++ DEAD +L F+
Sbjct: 149 GVDMAAQAMALARRPHIIVATPGRLVDHLENTKGFNL---KALKFLIMDEADRILNMDFE 205
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
++ +++ + E++ + + +K +++ +SL P
Sbjct: 206 VELDKILKVIP-RERRTYLFSATMTKKVSKLERASLRDP 243
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 210 (79.0 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 67/250 (26%), Positives = 120/250 (48%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G A
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQC--A 124
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 125 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQD 308
F+ +V +++ + D K + + +K ++ ++L P Q E LQ
Sbjct: 182 MDFETEVDKILKVIPRDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ 240
Query: 309 EYISDEGNFE 318
Y+ F+
Sbjct: 241 YYLFIPSKFK 250
Score = 180 (68.4 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Query: 547 PV 548
PV
Sbjct: 387 PV 388
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 210 (79.0 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 67/250 (26%), Positives = 120/250 (48%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G A
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQC--A 124
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 125 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQD 308
F+ +V +++ + D K + + +K ++ ++L P Q E LQ
Sbjct: 182 MDFETEVDKILKVIPRDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ 240
Query: 309 EYISDEGNFE 318
Y+ F+
Sbjct: 241 YYLFIPSKFK 250
Score = 180 (68.4 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Query: 547 PV 548
PV
Sbjct: 387 PV 388
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 210 (79.0 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 67/250 (26%), Positives = 121/250 (48%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 47 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 106
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G + A
Sbjct: 107 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG--VQSA 150
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 151 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILN 207
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQD 308
F+ +V +++ + D K + + +K ++ ++L P Q E LQ
Sbjct: 208 MDFETEVDKILKVIPRDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ 266
Query: 309 EYISDEGNFE 318
Y+ F+
Sbjct: 267 YYLFIPSKFK 276
Score = 180 (68.4 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 293 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 352
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 353 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 412
Query: 547 PV 548
PV
Sbjct: 413 PV 414
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 208 (78.3 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 67/250 (26%), Positives = 120/250 (48%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G A
Sbjct: 83 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQC--A 126
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 127 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILN 183
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQD 308
F+ +V +++ + D K + + +K ++ ++L P Q E LQ
Sbjct: 184 MDFETEVDKILKVIPRDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ 242
Query: 309 EYISDEGNFE 318
Y+ F+
Sbjct: 243 YYLFIPSKFK 252
Score = 180 (68.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 388
Query: 547 PV 548
PV
Sbjct: 389 PV 390
>DICTYBASE|DDB_G0269986 [details] [associations]
symbol:DDB_G0269986 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269986
GO:GO:0005524 EMBL:AAFI02000005 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_646448.1
EnsemblProtists:DDB0190716 GeneID:8617407 KEGG:ddi:DDB_G0269986
InParanoid:Q55CN3 Uniprot:Q55CN3
Length = 796
Score = 216 (81.1 bits), Expect = 7.4e-28, Sum P(3) = 7.4e-28
Identities = 52/152 (34%), Positives = 78/152 (51%)
Query: 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
+E +E T T + K + + +T++F N D+ + L GI
Sbjct: 620 QEDKVETTTTTTTKTTTDGNKIAKQ---QKRKTLIFCNKPDSCRSTEYFLTENGINATSL 676
Query: 455 HKDLSLEERAKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H ++ R++ +F F V TD A+RGIDI + HVI DF ++ +D+LHR+GR
Sbjct: 677 HGEMPPHRRSENWKSFLNGDKEFLVATDIASRGIDIGLIDHVILFDFPSNPIDYLHRIGR 736
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
TARAG GLVT L T +R L D I+ + + G
Sbjct: 737 TARAGNRGLVTCLITHKDRYLADEIKESIRKG 768
Score = 116 (45.9 bits), Expect = 7.4e-28, Sum P(3) = 7.4e-28
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 84 VTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVP 141
+ + LG+ L+ +L+ PS++Q ++ P+LS KDV+ ++TG+GKT +YL+P
Sbjct: 225 IAFSRLGIKKNLVESLKKHFNITIPSLIQQLAIPPILSNSKDVLFVSQTGTGKTLTYLLP 284
Query: 142 LIEKL 146
+I+ +
Sbjct: 285 IIQNI 289
Score = 104 (41.7 bits), Expect = 7.4e-28, Sum P(3) = 7.4e-28
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 152 DSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI 211
+ ENS + P R +++L P L QV+++A +S E A+ G G +
Sbjct: 358 EKENSRLLLKRAPRRPKAIILVPTRELAIQVMKVAKKISF---EVKFSCTAISSGGG-DL 413
Query: 212 GK--------P-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGS-FQN 260
K P D+++STP +L+ I+ K+ F ++++V DEAD M G F+
Sbjct: 414 NKYLKTFKNLPIDILISTPGSLIKLIEQKKI----FFSKLRHLVIDEADSMFTIGKGFEQ 469
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLT 296
+ +++ F++ +L E G E + S T
Sbjct: 470 DIDKIVQPFKY---RLQNKQEIGSENAINATICSAT 502
Score = 64 (27.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 37/185 (20%), Positives = 84/185 (45%)
Query: 267 NMFRFDEKQLSRMNES-----GVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDS 321
N+ + +E++L + E+ EK E + + + + +EE +DE I + N ++
Sbjct: 288 NIKKSEEQELKEIKENIKLENNNEKEEEQEEEIVEKEE--EEEEQEDENIEKDNNNNNNN 345
Query: 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAAT--LPINGKKTAGAVLKQMFPDA 379
+ EE + +K++ R + K R + I + T L I K A + ++
Sbjct: 346 NNNNNNEEITNE--EKENSRLLLKRAPRRPKAIILVPTRELAIQVMKVAKKISFEVKFSC 403
Query: 380 DWIS--GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
IS G L+ + K I++ + T +LI+ ++++ F ++ ++ + D++
Sbjct: 404 TAISSGGGDLNKYLKTFKNLPIDILISTP-GSLIKLIEQKKIFFSKLRHLVI--DEADSM 460
Query: 438 YAVTK 442
+ + K
Sbjct: 461 FTIGK 465
Score = 43 (20.2 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVG-----PVLSGKDVVIAAETGSGKTHS 137
N T S L+++L++ + N F PSI + ++ L + I G H
Sbjct: 495 NATICSATLTEQLMKQI-NQSF--PSIEKLSTPTIHKSLNTLEQRFFYIPPGLNGGDKHG 551
Query: 138 YLVPLIEKLCTALGDSENSNSDK 160
L+ IE + L +EN N +K
Sbjct: 552 ALMKAIESV--VLNKNENKNKNK 572
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 195 (73.7 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 62/230 (26%), Positives = 120/230 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGL+ L+ + GF PS +QA ++ +L G+D++ +A+TGSGKT S+ +P++
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L SE+ P +++L P L Q+ NA+ A +V +
Sbjct: 65 QL------SED--------PYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNC--SVVIG 108
Query: 205 G----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K P +IV+TP L ++++ + ++F K++V DEAD LL F+
Sbjct: 109 GIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFC---KFLVLDEADRLLGEDFE 165
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDLQDEENLQD 308
++ ++ EK+ + + + + K L ++D+ +L +P + ++ + D
Sbjct: 166 LEIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYD 215
Score = 191 (72.3 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 62/194 (31%), Positives = 90/194 (46%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT+ N K L + F D N + LK+++I + T+ L
Sbjct: 181 RQTLLFSATMTKNLTKLDSIALNKPFIFED----NSKYDTVDTLKQEYIYMPAPTKDCYL 236
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+ +K+ E S +VF N AV AV +L I H L + R L F
Sbjct: 237 VYILKKH-----EGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTF 291
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K V V TD A+RG+DIP+V VI + S+ D++HRVGRTAR G+ G S T
Sbjct: 292 KSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITP 351
Query: 530 SNRDLVDTIRRAAK 543
+ L+ I K
Sbjct: 352 HDVSLIKGIEEIIK 365
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 197 (74.4 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 59/221 (26%), Positives = 113/221 (51%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++K LG+++ L A + G+ +P+ +Q ++ L G+DV+ AETGSGKT ++ VP+
Sbjct: 78 HTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPV 137
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
++ L R +LVL P L Q+ +AL + G + AV
Sbjct: 138 LQSLLACA--------------QRLHTLVLTPTRELAFQIAEQFDALGSSIG--VKTAVI 181
Query: 203 VCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
V G Q + K P V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 182 VGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNL---RALKYLVMDEADRILNMD 238
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+++V +++ + D + + + +K ++ ++L P
Sbjct: 239 FESEVDKILKVIPRDRRTFL-FSATMTKKVQKLQRAALQDP 278
Score = 187 (70.9 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 43/112 (38%), Positives = 61/112 (54%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF T + V +L+ GI H +S +R L F+ K V + TD A+RG
Sbjct: 322 MVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 381
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 382 LDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
Score = 40 (19.1 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 10/59 (16%), Positives = 23/59 (38%)
Query: 272 DEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEET 330
+++Q + + P + + ++ P +E N ++E N +D E T
Sbjct: 3 EQRQAAEEKNTNTHTPADTEETNTHTPADTEETNTHTPADTEETNTHTPADTEETNTHT 61
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 193 (73.0 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 46/134 (34%), Positives = 74/134 (55%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+E +K+ L AE R++VF T + + + L+ A I C ++ + R + F
Sbjct: 235 VELLKKILTEQAE--RSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRF 292
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+E + + TD AARGID+P++SHVI D SA +LHR+GRT RAG+ G+ SL
Sbjct: 293 REGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEA 352
Query: 530 SNRDLVDTIRRAAK 543
++ ++ + R K
Sbjct: 353 HDQPMMARVERYIK 366
Score = 187 (70.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 65/210 (30%), Positives = 102/210 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L L+ A+E GF RP+ VQA ++ L G+DV+ +A TG+GKT ++++P ++
Sbjct: 4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D ++ P R L+L P L QV A AL A N + +
Sbjct: 64 YLL----DFPR----RKAGPARI--LILTPTRELAMQVAEQAQAL-AKNTR--LNIFTIT 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + D++V+TP LL ID +R R +++++ DEAD +L F
Sbjct: 111 GGVQYQEHADILATTQDIVVATPGRLLEYIDAERFD----CRAIEWLILDEADRMLDMGF 166
Query: 259 QNQVIRLINMFRFDEKQL---SRMNESGVE 285
V RL R+ ++ L + + GVE
Sbjct: 167 GPTVDRLSTECRWRKQTLLFSATLEGRGVE 196
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 193 (73.0 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 46/134 (34%), Positives = 74/134 (55%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+E +K+ L AE R++VF T + + + L+ A I C ++ + R + F
Sbjct: 235 VELLKKILTEQAE--RSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRF 292
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+E + + TD AARGID+P++SHVI D SA +LHR+GRT RAG+ G+ SL
Sbjct: 293 REGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEA 352
Query: 530 SNRDLVDTIRRAAK 543
++ ++ + R K
Sbjct: 353 HDQPMMARVERYIK 366
Score = 187 (70.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 65/210 (30%), Positives = 102/210 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L L+ A+E GF RP+ VQA ++ L G+DV+ +A TG+GKT ++++P ++
Sbjct: 4 TFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D ++ P R L+L P L QV A AL A N + +
Sbjct: 64 YLL----DFPR----RKAGPARI--LILTPTRELAMQVAEQAQAL-AKNTR--LNIFTIT 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + D++V+TP LL ID +R R +++++ DEAD +L F
Sbjct: 111 GGVQYQEHADILATTQDIVVATPGRLLEYIDAERFD----CRAIEWLILDEADRMLDMGF 166
Query: 259 QNQVIRLINMFRFDEKQL---SRMNESGVE 285
V RL R+ ++ L + + GVE
Sbjct: 167 GPTVDRLSTECRWRKQTLLFSATLEGRGVE 196
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 212 (79.7 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 61/222 (27%), Positives = 108/222 (48%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+NVT++SLG+ ++I A GF +P +Q S+ L G+D++ A+TGSGKT ++++P
Sbjct: 117 ENVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIP 176
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++KL A P L L P L Q+ NA+ + G + V
Sbjct: 177 VLQKLLEA--------------PQGLFCLALAPTRELAYQIADQFNAIGSTIG--VKTCV 220
Query: 202 AVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V G Q + K P V+V +P +L++++ + + R +KY + DEAD L
Sbjct: 221 LVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNL---RSIKYFIMDEADRLFSA 277
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ +V ++ + E+ + + K ++ +SL P
Sbjct: 278 DFEEEVNNILKVIP-KERNTYLFSATMTSKVAKLQRASLVNP 318
Score = 171 (65.3 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 38/118 (32%), Positives = 65/118 (55%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++F +T + + +L+ G + D+ +R +L F++ + V TD AAR
Sbjct: 361 TIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAAR 420
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
G+DIP+V VI D T++ +++HRVGRTARAG G ++ T+ + ++ I K
Sbjct: 421 GLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLK 478
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 193 (73.0 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 43/121 (35%), Positives = 65/121 (53%)
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVC 479
G + + ++F N V V K L+ G + H DL +R +TL F+E K + V
Sbjct: 249 GEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVA 308
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+D AARG+D+P+VSHV D D++HR+GRT RAG+ G +L + +D I
Sbjct: 309 SDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAIE 368
Query: 540 R 540
+
Sbjct: 369 K 369
Score = 188 (71.2 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 61/196 (31%), Positives = 104/196 (53%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L+ ++++A+E +G+ P+ +QA ++ P L G+DV+ A+TG+GKT S+ +P+I
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L A G + PR SLVLCP L QV N + L +A+ + G
Sbjct: 64 L--ARGRAR-------ARMPR--SLVLCPTRELAAQVAE--NFDTYTKHLKLTKALLIGG 110
Query: 206 ----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
Q I + DV+++TP LL++ + R ++ + GV+ +V DEAD +L F
Sbjct: 111 VSFKEQDALIDRGVDVLIATPGRLLDHFE---RGKL-LLTGVQIMVVDEADRMLDMGFIP 166
Query: 261 QVIRLINMFRFDEKQL 276
+ R+ ++ F + L
Sbjct: 167 DIERIFSLTPFTRQTL 182
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 208 (78.3 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 67/250 (26%), Positives = 120/250 (48%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 79
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G A
Sbjct: 80 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQC--A 123
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 VIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILN 180
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQD 308
F+ +V +++ + D K + + +K ++ ++L P Q E LQ
Sbjct: 181 MDFETEVDKILKVIPRDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQ 239
Query: 309 EYISDEGNFE 318
Y+ F+
Sbjct: 240 YYLFIPSKFK 249
Score = 167 (63.8 bits), Expect = 8.2e-27, Sum P(2) = 8.2e-27
Identities = 34/93 (36%), Positives = 53/93 (56%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 266 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 326 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 358
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 192 (72.6 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 63/205 (30%), Positives = 105/205 (51%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
+ G D+ F ++K +G SD ++ AL + GF RPS +QA + PVL GK +I ++
Sbjct: 228 QKGPLDSGFFSRR-SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQS 286
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190
GSGKT +YL P+++ L + + +S P PR +VL P L QV+ ++S
Sbjct: 287 GSGKTLAYLCPVVQNLRKEEVEGLHRSS---PRNPRV--VVLTPTAELASQVLNNCRSIS 341
Query: 191 ADNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
+G P R++ GG Q + + DV+++TP L + + + ++
Sbjct: 342 K-SGVPF-RSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLL----QEGFVQLNNLRC 395
Query: 245 VVFDEADMLLCG-SFQNQVIRLINM 268
VV DE D+L SF+ + +LI +
Sbjct: 396 VVLDEVDILYGEESFEQVLHQLITV 420
Score = 190 (71.9 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 59/181 (32%), Positives = 91/181 (50%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
QY+FV ATLP++ V+ + FPD + I G +H + RL+E ++ + D +
Sbjct: 426 QYLFVTATLPLD---IYNKVV-ETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNP 481
Query: 412 EAV----KERLEFGAETS---RTMVFANTVDAVYAVTKIL-----KTAGIECYCYHKDLS 459
E K L E S +T++F N ++ V L K + I+ +H L
Sbjct: 482 ETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALD 541
Query: 460 LEERA---KTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
++R K +N Q +F VCTD A+RGID NV+HV+ D+ +++ RVGRTA
Sbjct: 542 QQQRIANIKEFLNKQTADSMFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTA 601
Query: 516 R 516
R
Sbjct: 602 R 602
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 198 (74.8 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 66/181 (36%), Positives = 101/181 (55%)
Query: 89 LGLSDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146
LGL R++ AL+ + +P+ VQ+ ++ P+L G+ ++ AAETGSGKT SYL+PL ++L
Sbjct: 131 LGLEPRVLLALQKAVPEIVQPTSVQSKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRL 190
Query: 147 CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVCG 205
G +S S T PR LVL P+ L EQV +A +L G L ++ + + G
Sbjct: 191 LK--GPELDSRSS---TAPRG--LVLVPSRELAEQVQAVAQSL----GRYLDLQVIELGG 239
Query: 206 GQGW-----PIGK-P--DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
G G +GK P DV+V+TP AL + + ++ + + ++V DE D LL S
Sbjct: 240 GLGMNRLKLQLGKWPSADVLVATPGALWKAL----KSQLISLHHLNFIVLDEVDTLLDES 295
Query: 258 F 258
F
Sbjct: 296 F 296
Score = 180 (68.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 62/200 (31%), Positives = 94/200 (47%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
Q + V AT P + V PD+ I+ + LH P +++ ++ + +V L
Sbjct: 325 QLVMVGATFPEGLNQLLSKVTS---PDSLTTITSSKLHCIMPHVRQTFMRLKGTEKVTEL 381
Query: 411 IEAVKERLEFG-AETSRT-MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
I+ +K+ + AE S T +VF N+ V + IL I+ + RA
Sbjct: 382 IQILKQHDKANKAEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQ 441
Query: 469 NFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVT 524
+FQ KG + VCTD A+RG+D +V V+ DF + D++HR GR R G G VT
Sbjct: 442 SFQ-KGSQNILVCTDIASRGLDSIHVEMVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVT 500
Query: 525 SLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 501 SFVTHPWDVSLVQKIELAAR 520
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 200 (75.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 64/190 (33%), Positives = 99/190 (52%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++T+ LGL RL+ L G P+ +Q ++ VL GKDV+ A+TG+GKT ++ +PL
Sbjct: 5 SITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPL 64
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
I++ E +NS KE RA LVL P L +QV+ A + G L + VA
Sbjct: 65 IQRFIEQPWQRE-ANS-KEI---RA--LVLVPTRELAQQVLDSLQAYA--KGTEL-KIVA 114
Query: 203 VCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG + G D++++TP LL++ K F+ V+ +V DEAD +L
Sbjct: 115 VYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSL----FLGKVEVLVLDEADRMLDM 170
Query: 257 SFQNQVIRLI 266
F + R++
Sbjct: 171 GFMPDLQRVL 180
Score = 173 (66.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T A+ + LK GI+ + D S R K L +F+ K + TD AA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
RG+DI + V+ D A D++HR+GRT RAG GL SL + + ++ I R
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIER 368
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 200 (75.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 64/190 (33%), Positives = 99/190 (52%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++T+ LGL RL+ L G P+ +Q ++ VL GKDV+ A+TG+GKT ++ +PL
Sbjct: 5 SITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPL 64
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
I++ E +NS KE RA LVL P L +QV+ A + G L + VA
Sbjct: 65 IQRFIEQPWQRE-ANS-KEI---RA--LVLVPTRELAQQVLDSLQAYA--KGTEL-KIVA 114
Query: 203 VCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG + G D++++TP LL++ K F+ V+ +V DEAD +L
Sbjct: 115 VYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSL----FLGKVEVLVLDEADRMLDM 170
Query: 257 SFQNQVIRLI 266
F + R++
Sbjct: 171 GFMPDLQRVL 180
Score = 173 (66.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 41/116 (35%), Positives = 60/116 (51%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T A+ + LK GI+ + D S R K L +F+ K + TD AA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
RG+DI + V+ D A D++HR+GRT RAG GL SL + + ++ I R
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIER 368
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 193 (73.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 68/235 (28%), Positives = 114/235 (48%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
S +N + D+ + T+K LG+ D L A E GF P+ +Q ++ VL+ +DV+ A
Sbjct: 31 SSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA 90
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
+TGSGKT ++ +P+I++L P+P A +VL P L Q+ A
Sbjct: 91 QTGSGKTAAFALPVIQELWN------------NPSPFFA--VVLAPTRELAYQISEQFEA 136
Query: 189 LSADNGEPLVRAVAVCG--GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+ G V V Q + K P V+V TP L+++++ + + + +KY+
Sbjct: 137 IGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSL---KNLKYL 193
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQL--SRMNESGVEKPLEMDNSSLTQP 298
+ DEAD LL F + +++ + + + L S S VEK + +SL QP
Sbjct: 194 IMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEK---LQRASLHQP 245
Score = 181 (68.8 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 46/120 (38%), Positives = 63/120 (52%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++FA TV+ + +L+T G H LS R L F+ V TD AARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP V VI D T + ++HRVGRTARAG+ G +L T+ DL +R A +G+
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQY--DLEPFLRIEATIGK 406
Score = 37 (18.1 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 326 LTEETKSGSIKKK 338
LTE+ K+ S+ KK
Sbjct: 8 LTEDKKNSSLNKK 20
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 192 (72.6 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 63/191 (32%), Positives = 101/191 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L+ L+ P+ VQ ++ +L G++++ AAETGSGKT +YL+P+I
Sbjct: 152 TFHCFNLCPELVETLQRQNIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIH 211
Query: 145 KLCT-ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L L SE S RA +V+ P+ L EQV +A ++S G LV V V
Sbjct: 212 RLQEDLLAGSERSI--------RA--VVIVPSRELAEQVNSVARSVSERFG--LVVKV-V 258
Query: 204 CGGQG-------WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG+G + G+PD++VSTP ALL + +R + + ++V DEAD +
Sbjct: 259 GGGRGVGTIKAAFARGQPDILVSTPGALLKAL----WKRFISLSELYFLVIDEADTMFDD 314
Query: 257 SFQNQVIRLIN 267
SF + ++++
Sbjct: 315 SFAGMLEKILS 325
Score = 184 (69.8 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 61/201 (30%), Positives = 91/201 (45%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQM--FPDADWISGNYLHFHNPRLKEKWIEVTVDTQ 406
R Q + V AT P G G VL + + LH P +K+ ++ V +
Sbjct: 341 RKAQLVVVGATFP-GG---VGDVLSKATDLASISTVKSRMLHHLMPHIKQTFLRVKGADK 396
Query: 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
+ L +A+K R E E +VF N+ V + L+ G+ ++ R
Sbjct: 397 ILELHQALK-RAE--QEQKGVLVFCNSASTVNWLGYSLEEMGVGHMRLQGEMPAAMREGV 453
Query: 467 LVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG--QYGLV 523
+FQ K V VCTD A+RG+D V ++ DF S D++HR GR RAG + G V
Sbjct: 454 FRDFQRGKTNVLVCTDIASRGLDTQRVGLIVNYDFPESQTDYIHRAGRVGRAGGSEGGEV 513
Query: 524 TSLYTES-NRDLVDTIRRAAK 543
S T+ + +LV I AA+
Sbjct: 514 LSFVTQPWDVELVQKIETAAR 534
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 212 (79.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 69/235 (29%), Positives = 118/235 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A L+L P+ L Q +++ L G L ++V + G
Sbjct: 153 L--------KSHSTKFG----ARGLILSPSRELALQTLKVVKELG--KGTDL-KSVLLVG 197
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G G PD++++TP L+ K ++ + +KYVVFDEAD L F
Sbjct: 198 GDSLEEQFGMMAGNPDIVIATPGRFLHL---KVEMNLD-LSSIKYVVFDEADRLFEMGFA 253
Query: 260 NQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
Q+ +++ +F K L +G++ P + +D S PDLQ+
Sbjct: 254 AQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQN 308
Score = 167 (63.8 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 52/141 (36%), Positives = 74/141 (52%)
Query: 393 RLKEKWIEVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
RLKEK E + + + A +E E + S T+VFA T V + +L+ AG
Sbjct: 342 RLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHS-TIVFAATKHHVDYLYSLLREAGFAV 400
Query: 452 YCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
+ L R + NF+ + V TD AARGIDIP +++VI DF + F+HR
Sbjct: 401 SYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHR 460
Query: 511 VGRTARAGQYGLVTSLYTESN 531
VGRTARAG+ G SL +++
Sbjct: 461 VGRTARAGRKGWSYSLVRDAD 481
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
S V G+T KS D R+ RK Q+ ++
Sbjct: 896 SKVGGVTSGGKSEIRNTDDIRKARKLKQKRRE 927
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 187 (70.9 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 46/120 (38%), Positives = 66/120 (55%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
E +R++VF + V+ + L+ AGI CY ++ +R + + E + V V T
Sbjct: 247 EATRSIVFVRKRERVHELANWLREAGINNCYL-EGEMVQGKRNEAIKRLTEGRVNVLVAT 305
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D AARGIDIP+VSHV D S +LHR+GRTARAG+ G SL + L+ + R
Sbjct: 306 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 365
Score = 183 (69.5 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 59/195 (30%), Positives = 93/195 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L + L+ AL++ GF RP+ +QAA++ P L G+DV+ +A TG+GKT +YL+P ++
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG---EPLVRAV 201
L D S PPR L+L P L QV A L+ + V
Sbjct: 65 HLL----DFPRKKSG----PPRI--LILTPTRELAMQVSDHARELAKHTHLDIATITGGV 114
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
A D++V+T LL I + + R V+ ++ DEAD +L F
Sbjct: 115 AYMNHAEVFSENQDIVVATTGRLLQYI---KEENFD-CRAVETLILDEADRMLDMGFAQD 170
Query: 262 VIRLINMFRFDEKQL 276
+ + R+ ++ L
Sbjct: 171 IEHIAGETRWRKQTL 185
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 197 (74.4 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 70/242 (28%), Positives = 116/242 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG+ D+L A EN G+ P+ +Q+ ++ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P LVL P L Q+ + L + G AV V
Sbjct: 107 ALMEA--------------PQTLFGLVLAPTRELAYQISQAFETLGSTIGVRC--AVIVG 150
Query: 205 G----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL---CG 256
G Q +GK P +IV+TP LL++++ + + R +KY+ DEAD LL G
Sbjct: 151 GMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSL---RNLKYLAIDEADRLLDMDFG 207
Query: 257 SFQNQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
+++IR++ + + F ++ + + + P+ + SS Q LQ
Sbjct: 208 ESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSS----KYQTVSTLQSS 263
Query: 310 YI 311
YI
Sbjct: 264 YI 265
Score = 172 (65.6 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 40/112 (35%), Positives = 58/112 (51%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
EF +++ ++F TV V +L+ G H LS R L F+ + +
Sbjct: 282 EFAGQSA--IIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 339
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
V TD AARG+DIP+V V D + ++HRVGRTARAG+ G+ S T+
Sbjct: 340 VATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ 391
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 207 (77.9 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 50/151 (33%), Positives = 77/151 (50%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ + E+ +++ L+ + L A +VF T V V + L G
Sbjct: 212 PAIRQVYYELPETEKIEGLVSILNSELPIQA-----IVFCRTKKRVDEVVEQLNFRGYAA 266
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H D+S ER +T+ +F+ K + V TD AARG+DIP+VSHVI D + ++HR
Sbjct: 267 KGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHR 326
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
+GRT RAG+ G +L R L+ I A
Sbjct: 327 IGRTGRAGREGKAITLINYRERKLLKAIEEA 357
Score = 159 (61.0 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 52/182 (28%), Positives = 94/182 (51%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K LGL L++A+ + GF P+ +Q ++ +L G ++V A TG+GKT +YL+P++++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ G TP R +L + V + +++ AL+ G+ + R +
Sbjct: 64 I--QRGKKAQVLI---VTPTRELALQVADEVAKLGKYLKV-RALAVYGGQAIERQI---- 113
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
+G G +VIV TP +L++I K E +K V+ DEAD +L F + + +
Sbjct: 114 -RGLRQGV-EVIVGTPGRILDHIGRKTFPAAE----IKIVILDEADEMLDMGFIDDIEAI 167
Query: 266 IN 267
+N
Sbjct: 168 LN 169
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 207 (77.9 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 50/151 (33%), Positives = 77/151 (50%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ + E+ +++ L+ + L A +VF T V V + L G
Sbjct: 212 PAIRQVYYELPETEKIEGLVSILNSELPIQA-----IVFCRTKKRVDEVVEQLNFRGYAA 266
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H D+S ER +T+ +F+ K + V TD AARG+DIP+VSHVI D + ++HR
Sbjct: 267 KGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHR 326
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
+GRT RAG+ G +L R L+ I A
Sbjct: 327 IGRTGRAGREGKAITLINYRERKLLKAIEEA 357
Score = 159 (61.0 bits), Expect = 5.3e-26, Sum P(2) = 5.3e-26
Identities = 52/182 (28%), Positives = 94/182 (51%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K LGL L++A+ + GF P+ +Q ++ +L G ++V A TG+GKT +YL+P++++
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ G TP R +L + V + +++ AL+ G+ + R +
Sbjct: 64 I--QRGKKAQVLI---VTPTRELALQVADEVAKLGKYLKV-RALAVYGGQAIERQI---- 113
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
+G G +VIV TP +L++I K E +K V+ DEAD +L F + + +
Sbjct: 114 -RGLRQGV-EVIVGTPGRILDHIGRKTFPAAE----IKIVILDEADEMLDMGFIDDIEAI 167
Query: 266 IN 267
+N
Sbjct: 168 LN 169
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 196 (74.1 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 54/215 (25%), Positives = 104/215 (48%)
Query: 328 EETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL 387
E K G I +W + ++ +Q +AT+P K+ A LK +A IS
Sbjct: 159 EMLKMGFIDDIEW--ILEHTPPQRQLALFSATMPEQIKRVANKHLK----NATNISIAAS 212
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA 447
H +++++++V+ +++AL+ ++ +E T ++F T ++ + + L+
Sbjct: 213 HTTVDSIEQRFVQVSQHNKLEALVRVLE--VE---NTEGIIIFVRTRNSCVELAEKLEAR 267
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D++ + R + + + K + + TD AARG+D+ + HV+ D
Sbjct: 268 GYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEA 327
Query: 507 FLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
++HR+GRT RAG+ G+ T ++ TI RA
Sbjct: 328 YVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERA 362
Score = 177 (67.4 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 49/183 (26%), Positives = 101/183 (55%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+ D T++ LGLS+ L+RAL+ G+ +P+ +Q+AS+ P+++GKD++ A+TG+GKT ++
Sbjct: 2 SSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFA 61
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+PL+ K+ S+ + P R ++ + + ++ + L G+ + +
Sbjct: 62 LPLLNKVT-----SQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQ 116
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+ +G P VIV TP +++++ RR ++ + ++ +V DEAD +L F
Sbjct: 117 QLNALK-RG-----PQVIVGTPGRVMDHM---RRGTLK-LETLQALVLDEADEMLKMGFI 166
Query: 260 NQV 262
+ +
Sbjct: 167 DDI 169
Score = 40 (19.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 273 EKQLSRMNESGVEKPLEMDNSSL 295
E L ++E G EKP + ++S+
Sbjct: 15 ENLLRALDELGYEKPTPIQSASI 37
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 200 (75.5 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 56/199 (28%), Positives = 110/199 (55%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+D + LGLS+ L++A+ + G+ PS +QA ++ V+SG+DV+ AA+TG+GKT +
Sbjct: 2 SDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFT 61
Query: 140 VPLIEKLCTALGDSENSNSDKEP--TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
+PL+++L ++ G+ +SN+ + TP R + + ++ + + + + +++ G +
Sbjct: 62 LPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNL-HSMVVFGGVKI 120
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
+A QG DV+V+TP LL D +R ++F + ++ + DEAD +L
Sbjct: 121 NPQIARLR-QG-----VDVLVATPGRLL---DLYNQRAVKFSQ-LEVFILDEADRMLDMG 170
Query: 258 FQNQVIRLINMFRFDEKQL 276
F + +L+ D + L
Sbjct: 171 FIRDIKKLMTALPKDRQNL 189
Score = 167 (63.8 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 40/111 (36%), Positives = 55/111 (49%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T +TK L+ G+ H + S R K L F++ + V TD AA
Sbjct: 252 QVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAA 311
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
RGIDI + V+ D D++HR+GRTARAG G SL DL+
Sbjct: 312 RGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLL 362
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 201 (75.8 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 69/185 (37%), Positives = 103/185 (55%)
Query: 85 TWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++ LGL R++ AL+ + +P+ VQ++++ +L G+ VV AAETGSGKT SYL+PL
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 143 IEKLCTALGDSENSNSDKEPTP-PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++L LG + D P P PR LVL P+ L +QV +A L G LVR +
Sbjct: 187 LQRL---LGQP---SLDSLPIPAPRG--LVLVPSRELAQQVRAVAQPLGRSLGL-LVRDL 237
Query: 202 AVCGGQGW-----PIGK-P--DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
GG G + + P DV+V+TP AL + + R+ + + ++V DEAD L
Sbjct: 238 E--GGHGMRRIRLQLSRQPSADVLVATPGALWKAL----KSRLISLEQLSFLVLDEADTL 291
Query: 254 LCGSF 258
L SF
Sbjct: 292 LDESF 296
Score = 168 (64.2 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 58/200 (29%), Positives = 91/200 (45%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMF-PDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
Q + V AT P G G +L ++ PDA I+ + LH P +K+ ++ + +V
Sbjct: 325 QLVLVGATFP-EG---VGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADKVAE 380
Query: 410 LIEAVK--ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
L+ +K +R E + +VF N+ V + IL I+ + R
Sbjct: 381 LVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIF 440
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVT 524
+FQ+ + +CTD A+RG+D V V+ DF + D++HR GR R G G V
Sbjct: 441 QSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVI 500
Query: 525 SLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 501 SFVTHPWDVSLVQKIELAAR 520
Score = 43 (20.2 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 197 LVRAVAVCGGQGWPIGKPDV---IVSTPAALLNNIDPKRRRRMEFVRGV 242
LV + + +G + PD +V P AL ++ ++ RR R V
Sbjct: 12 LVTRLLLAPRRGLTVRSPDEPLPVVRIPVALQRQLEQRQSRRRNLPRPV 60
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 187 (70.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
RT+VF N++DA + +LK+ I+ H + ++R K L F E K V + TD AA
Sbjct: 442 RTIVFVNSIDAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAA 501
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
RG+DI + HVI ++HR GRTARA GL L +R
Sbjct: 502 RGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSR 549
Score = 187 (70.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 73/272 (26%), Positives = 130/272 (47%)
Query: 69 SDKNGSSDTFFADDNVTWKSLG-LSDRLIRALENSGFGRPSIVQAASV-GPVLSGKDVVI 126
S K S T D WK L + ++ A+E GF P+ +Q+A + V +DV+
Sbjct: 143 SKKEASKKT----DISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLG 198
Query: 127 AAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186
AAETGSGKT ++ +PL+ +L + DS+ + S E PRA L++ P L Q+++
Sbjct: 199 AAETGSGKTLAFGIPLVARLLESSDDSQETEST-EVRGPRA--LIVAPTRELVIQIMKHI 255
Query: 187 NALSADNGEPLVRAVAVCGG-----QGWPIG--KPDVIVSTPAALLNNIDPKRRRRMEFV 239
NAL + L+ A ++ GG Q I +PD++V+TP L + + EF+
Sbjct: 256 NALISTT--QLI-ATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMM--QEAETGEFL 310
Query: 240 ---RGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLT 296
+ +K +V DE D ++ + ++ ++N +E + ++ L +
Sbjct: 311 AEWKDLKCLVVDETDRMVEEGYFAELTHILNKIH-EESEKEKLQTLVFSATLTFAKAQ-- 367
Query: 297 QPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328
D+ +EE + + +S + + + GL E
Sbjct: 368 --DVAEEEKKKAKELSSQQKIQRLIKLTGLRE 397
Score = 49 (22.3 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
+ D + G+FE + EG+ ETK G KK ++V +N +R ++
Sbjct: 21 DFDDNMLQFLGSFE-EVLPEGVEVETKKGMKKKNKPKKV-ENTERPEE 66
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 203 (76.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 51/159 (32%), Positives = 77/159 (48%)
Query: 380 DWISGNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDA 436
D++ NY+ R+ E ++ V + D + + L+ ++S T+VF T
Sbjct: 445 DFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRG 504
Query: 437 VYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHV 495
+ L E H DL ER K L F+ + V T AARG+DIPNV HV
Sbjct: 505 ASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHV 564
Query: 496 IQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
I D + +++HR+GRT R G GL TS + + NR++
Sbjct: 565 INYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNI 603
Score = 169 (64.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 53/200 (26%), Positives = 101/200 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L + + ++ +G+ RP+ VQ S+ + G+D++ A+TGSGKT ++LVPL+
Sbjct: 233 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNA 292
Query: 146 LCT----ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+ A+ S S+ ++ P A LVL P L Q+ + + P+ A+
Sbjct: 293 ILQDGPDAVHRSVTSSGGRKKQYPSA--LVLSPTRELSLQIFNESRKFAYRT--PITSAL 348
Query: 202 AVCGGQGWP--IGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G + + I K ++++TP L++ +D + + + G +Y+V DEAD +L
Sbjct: 349 LYGGRENYKDQIHKLRLGCHILIATPGRLIDVMD----QGLIGMEGCRYLVLDEADRMLD 404
Query: 256 GSFQNQVIRLINMFRFDEKQ 275
F+ Q+ +++ R K+
Sbjct: 405 MGFEPQIRQIVECNRMPSKE 424
Score = 45 (20.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 303 EENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQ 348
EE+ + Y+ D + GDS + + ETK G+ + R+NY+
Sbjct: 474 EEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLN-RQNYE 518
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 206 (77.6 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 67/221 (30%), Positives = 105/221 (47%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT ++LVPL EK
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + T RA L+L P L Q ++ L G +R + G
Sbjct: 140 L----------KAPQAQTGARA--LILTPTRELALQTMKFTKELGKFTG---LRTALILG 184
Query: 206 GQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G PD+I+ TP L++ I + ++ V+YVVFDEAD L F
Sbjct: 185 GDSMDDQFAALHENPDIIIGTPGRLMHVIQEMNLK----LQSVEYVVFDEADRLFEMGFA 240
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
Q+ +I D +Q + + + +E + LT+P L
Sbjct: 241 EQLQEIIRRLP-DARQTLLFSATLPKLIVEFARAGLTEPVL 280
Score = 167 (63.8 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 44/135 (32%), Positives = 70/135 (51%)
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
+LK + + +D + L+ ++ ++ +T+VF T V + ++L G++C
Sbjct: 292 QLKLSFFSLRLDDKPALLLHLLRNVVK---PQEQTVVFVATKHHVEYLKELLSAEGVDCS 348
Query: 453 CYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
C + L R ++ F K + + TD AARGIDIP + +VI +F FLHRV
Sbjct: 349 CIYSALDQTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRV 408
Query: 512 GRTARAGQYGLVTSL 526
GR ARAG+ G SL
Sbjct: 409 GRVARAGRGGTAYSL 423
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 194 (73.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-----GVFVCTD 481
T+VFAN++D+V + +L I + H + ++R + L F+E V V +D
Sbjct: 490 TLVFANSIDSVKRLVPLLNNLNIPAFSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASD 549
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARG+DIPN+ HV+ SA ++HR GRTARAG+ G V++++ S ++ +R+
Sbjct: 550 VAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEG-VSAMFC-SPQEASGPLRKL 607
Query: 542 AKL 544
+L
Sbjct: 608 RRL 610
Score = 178 (67.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 60/205 (29%), Positives = 98/205 (47%)
Query: 81 DDNV----TWKS--LG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGS 132
DDN W+ LG +S + L F +P+ +Q ++ LSGKDV+ A TGS
Sbjct: 186 DDNEINLPNWQEGDLGSSISAYTLYGLSQLDFKKPTPIQKETIPIALSGKDVIGKATTGS 245
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD 192
GKT +Y +P++EK +L + +N DK+ P ++ P L QVV N L+
Sbjct: 246 GKTLAYGIPILEKYIQSLNLIKQNNKDKKINHPTG--IIFAPTRELAHQVVDHLNKLAKY 303
Query: 193 NGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNI--DPKRRRRMEFVRGVKY 244
+ V++ GG Q P +IV+TP +L + D + +R+ +
Sbjct: 304 SPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATPGRMLELVQGDSELAKRLA---SIDI 360
Query: 245 VVFDEADMLLCGSFQNQVIRLINMF 269
+V DEAD LL ++ +++ +F
Sbjct: 361 IVLDEADRLLQDGHFDEFEKILELF 385
Score = 54 (24.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 277 SRMNESGVEK--PLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEE 329
SR+N K P+EMD S +P ++ L D IS + DS V+ E+
Sbjct: 619 SRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADASISSTATRKEDSWVKQAAED 673
Score = 51 (23.0 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 280 NESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSG 333
NE+G E ++++++ P+++DE+ + E +E E + + E EE +G
Sbjct: 89 NENG-ENNMDVEDNET--PEVEDEKPTEQEEEEEEEEEEEEEEEEEEEEEEFAG 139
Score = 48 (22.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 285 EKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332
EKP E + + + ++EE ++E +E F G D E E+ +
Sbjct: 109 EKPTEQEE----EEEEEEEEEEEEEEEEEEEEFAGFEDDENNQEDANT 152
Score = 38 (18.4 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 272 DEKQLSRMNESGVEKPLEMDNSSLTQPD----LQDEENLQDEYISDEGNFEGDSD 322
DEK + E E+ E + + + +D+EN Q++ + E D D
Sbjct: 108 DEKPTEQEEEEEEEEEEEEEEEEEEEEEEFAGFEDDENNQEDANTSERVSNNDKD 162
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 186 (70.5 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 63/221 (28%), Positives = 102/221 (46%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D W+ LGLS + +L F P+ VQ + + P+L G DV+ A TGSGKT ++ +P
Sbjct: 195 DISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLP 254
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
++E L D E + P +L+L P L Q+ + L ++ R
Sbjct: 255 ILEHY---LERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVNART 311
Query: 201 VAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRR--RRMEFVRGVKYVVFDEADML 253
+ GG Q + D+++ TP + + + RRM+ G+K++V DEAD L
Sbjct: 312 ALLTGGLSVQKQQRLLETADIVIGTPGRVWEVLRTGQGLIRRMQ---GIKFLVIDEADRL 368
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSS 294
L +V +++ L R+ + G P E D+SS
Sbjct: 369 LSEGHFKEVEDILS-------SLDRVEDGG--PPDEEDDSS 400
Score = 185 (70.2 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 43/123 (34%), Positives = 68/123 (55%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK----GGVFVCTD 481
RT+VF N++ AV +T++L+T + H ++ + R +++ F G + V TD
Sbjct: 501 RTLVFTNSISAVRRITQLLQTLQLPALALHSSMAQKARLRSVERFSSSTANPGTILVATD 560
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARG+DI + VI +A ++HR GRTARAG G S+ S ++V +R A
Sbjct: 561 VAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGASG--KSVIICSPEEMVGVVRLA 618
Query: 542 AKL 544
AK+
Sbjct: 619 AKV 621
Score = 48 (22.0 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
K KW + + +++ E + ++L F E + F + V+ V + + LK +EC
Sbjct: 430 KGKWTGGDIMNKKESM-EYLLQKLNFREEKPK---FID-VNPVSQMAEGLKEGIVECPAM 484
Query: 455 HKDLSLEERAKTLVNFQEKGGVFVCTDA 482
KDL L TL+ + K V T++
Sbjct: 485 EKDLYLY----TLLLYHPKHRTLVFTNS 508
Score = 46 (21.3 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
+++ + D++ WK + L DRL E FG I V P +G+ +
Sbjct: 29 AERESKPEVVVGVDDLNWKEVALPDRLDN-FEGF-FGLEEIEGVDIVRPQGNGQ---LRF 83
Query: 129 ETGSGKTHSYLV--PLIEKLCTALGDSENSNSDKE 161
++ GK ++ P + T D N SD++
Sbjct: 84 KSAPGKPGKSILKKPTPKSEETEFDDEWNGFSDED 118
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 188 (71.2 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 63/205 (30%), Positives = 95/205 (46%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R + KN +Q +F +AT+P + A L+ P A+ +S R++++
Sbjct: 176 RAIAKNVPSKRQTLFFSATMPKAVESLAATFLRN--P-AE-VSVAPPATTAGRIEQRVCF 231
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V + LIE +++ E +VF T V K L A I+ H + S
Sbjct: 232 VEQPEKASLLIEKIRD-----PELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQ 286
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R K L F+ + + V TD AARGI + ++HVI D F+HR+GRTARAG
Sbjct: 287 SQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGN 346
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKL 544
G+ S +RD T+R KL
Sbjct: 347 SGVAISF---CSRDERPTLRAIEKL 368
Score = 175 (66.7 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGL+ R++ +L +G+ P+ +Q ++ V+ G+D+V A+TG+GKT ++ P++++
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 146 LCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L S N++ P P R LVL P L Q+ A G L R V VC
Sbjct: 69 L------SRNAS----PAPVRGTRVLVLAPTRELAGQIATSFGTYGA--GLNL-RVVMVC 115
Query: 205 GGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
GG G I + + ++V+TP L ID +R + + V+ ++ DEAD +L
Sbjct: 116 GGAKIGGQIRQLERGAHILVATPGRL---IDLMEQRAVSLDK-VETLILDEADQML 167
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 205 (77.2 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 71/198 (35%), Positives = 106/198 (53%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS+ FAD LGL ++RAL+++ RP+ VQ++++ P+L G+ ++ AA
Sbjct: 116 RNLSSEGSFAD-------LGLEPPVLRALKDAAPEVLRPTTVQSSTIPPLLRGRHILCAA 168
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT YL+PL+++L LG N P P LVL P+ L EQV +A
Sbjct: 169 ETGSGKTLGYLLPLLQRL---LG-RPGLNPHSTPAPR---GLVLVPSRELAEQVRAVAQP 221
Query: 189 LSADNGEPLVRAVAVCGGQGW-----PIGK-P--DVIVSTPAALLNNIDPKRRRRMEFVR 240
L G +R + GG G + K P DV+V+TP AL + + + ++
Sbjct: 222 LGISLG---LRVRELGGGHGMNRIRVQLSKQPPADVLVATPGALWKAL----KSHLVSLK 274
Query: 241 GVKYVVFDEADMLLCGSF 258
+ ++V DEAD LL SF
Sbjct: 275 QLSFLVLDEADTLLDESF 292
Score = 158 (60.7 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 58/200 (29%), Positives = 92/200 (46%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
Q + V AT P G + + K PD+ I+ + LH P +++ ++ + +V L
Sbjct: 321 QLVLVGATFP-EG--VSQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKGAEKVTEL 377
Query: 411 IEAVKER-LEFGAETSRT-MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
++ +K+ + S T +VF N+ V + IL I+ + RA
Sbjct: 378 VQILKQHDRAYRTGPSGTILVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQ 437
Query: 469 NFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVT 524
FQ KG + +CTD A+RG+D +V V+ DF + D++HR GR R G G V
Sbjct: 438 CFQ-KGSRDILLCTDIASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVI 496
Query: 525 SLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 497 SFVTHPWDVSLVQKIELAAR 516
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 186 (70.5 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 52/189 (27%), Positives = 100/189 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+W+ L+ L++A+E +G+ +PS +Q A++ L +DV+ AETGSGKT ++++P++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ SE + ++ AP+ L + E+ V+ A+ L R ++
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIE--EETVKFAHYLG-------FRVTSIV 424
Query: 205 GGQ-----GWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ G I + +++++TP L++ ++ RR + YVV DEAD ++ F
Sbjct: 425 GGQSIEEQGLKITQGCEIVIATPGRLIDCLE----RRYAVLNQCNYVVLDEADRMIDMGF 480
Query: 259 QNQVIRLIN 267
+ QV +++
Sbjct: 481 EPQVAGVLD 489
Score = 183 (69.5 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 45/111 (40%), Positives = 59/111 (53%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
E G +T+ +VF NT ++ K L AG H S E+R +L F+ K V
Sbjct: 573 ELGEKTA--IVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVL 630
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
V TD RGIDIP+V+HVI D + HR+GRT RAG+ G+ TS T
Sbjct: 631 VATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 189 (71.6 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 63/202 (31%), Positives = 99/202 (49%)
Query: 70 DKNGSSDTFFADDN--VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
D +G ++ ADD + L L RL +LE G +Q A + P L G+D++
Sbjct: 86 DLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIAR 145
Query: 128 AETGSGKTHSYLVPLIEKLCTALGD-SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186
A+TG+GKT ++ +P+I++L GD + S + P LVL P L +QV +
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPK-----FLVLAPTRELAKQVEKEI 200
Query: 187 NALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVR 240
SA P + V V GG + I + DV+V TP +++ I+ + + E
Sbjct: 201 KE-SA----PYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGE--- 252
Query: 241 GVKYVVFDEADMLLCGSFQNQV 262
V+Y+V DEAD +L F+ V
Sbjct: 253 -VEYLVLDEADQMLAVGFEEAV 273
Score = 180 (68.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 58/199 (29%), Positives = 94/199 (47%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+ +N +Q + +AT+P KK A L + D + G+ + +L E
Sbjct: 276 ILENLPTKRQSMLFSATMPTWVKKLARKYLDNPL-NIDLV-GD----QDEKLAEGIKLYA 329
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
+ T + + + + A+ +T+VF T V+ L + I H D+S +
Sbjct: 330 IATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQ 388
Query: 463 RAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R +TL F++ K V V TD A+RG+DIPNV VI + F+HR GRT RAG+ G
Sbjct: 389 RERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG 448
Query: 522 LVTSLYTESNRDLVDTIRR 540
++T S + V ++ R
Sbjct: 449 SAILMHTSSQKRTVRSLER 467
Score = 38 (18.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 168 PSLVLCPNVVLCEQVVR 184
PS V PN VL E+ +
Sbjct: 59 PSAVATPNSVLSEEAFK 75
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 206 (77.6 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 48/153 (31%), Positives = 82/153 (53%)
Query: 401 VTVDTQVDALIEAVKERLEFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V V + + L++ +K + AE ++T++F T V +T+ + G H D S
Sbjct: 380 VDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKS 439
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ER L +F+ + + V TD AARG+D+ +V VI D+ +++ D++HR+GRT R+
Sbjct: 440 QQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSN 499
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G +L+T SN DL+ +R A + P
Sbjct: 500 NTGTAYTLFTHSNANKANDLIQVLREANQTINP 532
Score = 163 (62.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 52/202 (25%), Positives = 99/202 (49%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++ ++ G D ++ + GF +P+ +QA +SG+D+V A+TGSGKT +Y++P
Sbjct: 156 SIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPA 215
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ + N + P A LVL P L +Q+ ++A ++ VR
Sbjct: 216 VVHI-------NNQPRLERGDGPIA--LVLAPTRELAQQIQQVAIEFGSNTH---VRNTC 263
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG P G+ +++++TP L++ ++ R ++ Y+V DEAD +L
Sbjct: 264 IFGGA--PKGQQARDLERGVEIVIATPGRLIDFLE----RGTTSLKRCTYLVLDEADRML 317
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F+ Q+ +++ R D + L
Sbjct: 318 DMGFEPQIRKIMQQIRPDRQVL 339
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 205 (77.2 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 45/123 (36%), Positives = 66/123 (53%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
T T++F T A+++ L H D + ER + L F+ + + V T
Sbjct: 446 TGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAV 505
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTI 538
AARG+DIPNV+HVI D T D++HR+GRT RAG G+ T+ + NR DL+D +
Sbjct: 506 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLL 565
Query: 539 RRA 541
+ A
Sbjct: 566 KEA 568
Score = 161 (61.7 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 54/188 (28%), Positives = 93/188 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D LI + + + P+ VQ S+ V++G+D++ A+TGSGKT +L P++
Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246
Query: 145 KLCT---ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG-EP-LVR 199
+ A + SL+L P L Q+ A + + P +V
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVY 306
Query: 200 AVAVCGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
A G Q I + D++V+TP L++ I+ R R+ V +KY++ DEAD +L F
Sbjct: 307 GGADIGSQLRQIERGCDLLVATPGRLVDLIE---RGRISLVN-IKYLILDEADRMLDMGF 362
Query: 259 QNQVIRLI 266
+ Q+ R++
Sbjct: 363 EPQIRRIV 370
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 201 (75.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 62/221 (28%), Positives = 111/221 (50%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKL--RQGQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG K DV+V+TP L+ D +R + F ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLM---DLYGQRAVYFEE-IEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F + ++I+ E Q + + K E+ +++ P
Sbjct: 164 FIESINKIIDCLP-SEVQFLLFSATLSRKVRELAKTAVRDP 203
Score = 155 (59.6 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 50/181 (27%), Positives = 81/181 (44%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 201 (75.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 62/221 (28%), Positives = 111/221 (50%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKL--RQGQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG K DV+V+TP L+ D +R + F ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLM---DLYGQRAVYFEE-IEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F + ++I+ E Q + + K E+ +++ P
Sbjct: 164 FIESINKIIDCLP-SEVQFLLFSATLSRKVRELAKTAVRDP 203
Score = 155 (59.6 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 50/181 (27%), Positives = 81/181 (44%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 184 (69.8 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
RT+VF N++D V + + H ++ ++R K L F++ G+ + TD AA
Sbjct: 547 RTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAA 606
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
RG+DIPNV HVI ++ +++HR GRTARA ++G +T ++ E
Sbjct: 607 RGLDIPNVEHVIHYQVPRTSENYVHRSGRTARANKHG-ITVMFME 650
Score = 129 (50.5 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSY 138
A+D W LG+ ++RAL GF P+ +QA ++ + GK D++ AAETGSGKT ++
Sbjct: 211 AEDMSAWNGLGVPASILRALGEQGFKTPTQIQALTLPAAIHGKKDILGAAETGSGKTLAF 270
Query: 139 LVPLI 143
+P++
Sbjct: 271 GIPML 275
Score = 94 (38.1 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 44/153 (28%), Positives = 72/153 (47%)
Query: 139 LVPLIEKLCTALGDS-ENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGE 195
L P E+L G S E S+++++ + P LVL P L QV A + G
Sbjct: 310 LTPPPEELDHVSGASDEESDAEEQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYTG- 368
Query: 196 PLVRAVAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
+R A+ GG Q + + PD++V+TP L + + R + + V ++V DE
Sbjct: 369 --IRVAAIFGGLAVAKQERVLRQCPDIVVATPGRLWE-LYAQGNRHLGKIEDVSFLVIDE 425
Query: 250 AD-MLLCGSFQNQVIRLINMFRFDE-KQLSRMN 280
D M+ G F+ ++ L+ + DE K+ R N
Sbjct: 426 TDRMVEKGHFE-ELRSLLKVLNSDEQKKHQRQN 457
Score = 56 (24.8 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 280 NESGVEKPLEMDNSSLTQPDLQDEENLQD-----EYISDEGN-FEGDSDVEGLTEETKSG 333
N+ KP ++ + +P L EN Q ISD+G FEG +E L + S
Sbjct: 4 NKQKTAKPPKLLKGAAKEPALSKAENWQKVKIKGHVISDDGGGFEGLIGLEVLKDYDAS- 62
Query: 334 SIKKKDWRRVRKNYQRSKQ 352
+K R +N R ++
Sbjct: 63 LVKSSQKRTTSRNPDRERK 81
Score = 45 (20.9 bits), Expect = 4.9e-25, Sum P(4) = 4.9e-25
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIE 412
+++ N + K+++ TVD ++++LIE
Sbjct: 472 DHMQKRNVGKRPKFVKQTVDQKIESLIE 499
Score = 43 (20.2 bits), Expect = 3.0e-19, Sum P(3) = 3.0e-19
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 224 LLNNIDPKRRRRMEFVRGVKY-VVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNES 282
+LN+ + K+ +R FV +V D D + + + + + D+K S + E
Sbjct: 444 VLNSDEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKRP-KFVKQ-TVDQKIESLIEEL 501
Query: 283 GVEKPLEMDNSSLTQ 297
G+ +P +D +S Q
Sbjct: 502 GISQPKIVDITSSQQ 516
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 236 (88.1 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 73/202 (36%), Positives = 107/202 (52%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
SSD D T++S+GL +R++RAL+ GF PS+VQ+ S+ L GKD++ A TGSG
Sbjct: 15 SSDLI--DLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSG 72
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
KT +Y +P+I+K+ A E SN ++VL P LCEQV N +S
Sbjct: 73 KTAAYSIPIIQKVLMA---KEKSNIKG------VKAVVLVPTRELCEQVKNHFNQVSY-Y 122
Query: 194 GEPLVRAVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ LV V + + K PDVIVSTP L+ +++ K ++ + +V
Sbjct: 123 CQQLVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENKT---IQLQSTLDILVI 179
Query: 248 DEADMLLCGSFQNQVIRLINMF 269
DEAD++L QN I +I F
Sbjct: 180 DEADLVLNYGHQND-INIIKSF 200
Score = 113 (44.8 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
ARGID NV V+ DF + +++HR+GRTAR G+ S T N +L+ + +
Sbjct: 428 ARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSK 484
Score = 74 (31.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 54/207 (26%), Positives = 83/207 (40%)
Query: 272 DEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETK 331
D++ E E E +N + +DEEN +DE DE N E D + E ++ K
Sbjct: 355 DDEMTDVKKEDDEENEDEEENDEENE---EDEENEEDE--EDEENEEDDDEEENEEDDDK 409
Query: 332 SGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF-- 389
KK + N + K+Y VA + + V+ FP I NY+H
Sbjct: 410 KNKNKKIN------NSKGDKEY-GVARGIDF---RNVDIVVNFDFPRT--IK-NYIHRIG 456
Query: 390 HNPRLKEKWIEVTVDT-QVDALIEAV-KERLEFGAETSRTMVFANTVDAV-YAVTKILKT 446
R K I ++ T + L++ V K R + G N ++ Y V +L+T
Sbjct: 457 RTARGTNKGIALSFVTYHNEELLKKVSKTRGDAGYNLKPFEFKMNAIEGFRYRVEDVLRT 516
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEK 473
GI K+ E + L+N EK
Sbjct: 517 IGIRAI---KEAKKTELKQELLN-NEK 539
Score = 54 (24.1 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 291 DNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEE 329
D+ +T +D+E +DE +DE N E + + E +E
Sbjct: 354 DDDEMTDVKKEDDEENEDEEENDEENEEDEENEEDEEDE 392
Score = 48 (22.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 285 EKPLEMDNSSLTQPDLQDEENLQDEYISDE-GNFEGDSDVEGLTEE 329
++ + D++ + +L+D EN D+ DE + + + D E EE
Sbjct: 328 DESFKSDSNKKEEQELEDNENEDDDDDDDEMTDVKKEDDEENEDEE 373
Score = 43 (20.2 bits), Expect = 7.1e-24, Sum P(3) = 7.1e-24
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCTD 481
+ + F N + Y + + I+C + +L + R ++ F + G+F + TD
Sbjct: 272 KILFFVNDTNNCYKLKLFFERFHIKCAVLNSELPINSRHDIILQFNK--GLFDYLIATD 328
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 209 (78.6 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 56/188 (29%), Positives = 90/188 (47%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLK----DYVFLSVGRVGSTSENITQKILYVEDDEKKS 432
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+++ + E T+VF T + L G H D S ER K L
Sbjct: 433 VILDLLSAN-----ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALA 487
Query: 469 NFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ + V T AARG+DIPNVSHVI D + D++HR+GRT RAG G+ T+ +
Sbjct: 488 AFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFF 547
Query: 528 TESNRDLV 535
+N+++V
Sbjct: 548 NRNNKNVV 555
Score = 155 (59.6 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 54/181 (29%), Positives = 86/181 (47%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI-EKLCTA 149
L + L+ ++ S F +P+ VQ SV V +G+D++ A+TGSGKT +L P++ E
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
SN LV+ P L Q+ + S + VRA V GG
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSW---VRACVVYGGAD- 308
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
IG+ D++V+TP L + +D R ++ ++Y+V DEAD +L F+ Q
Sbjct: 309 -IGQQMRNMDRGCDLLVATPGRLKDLLD---RGKVSLAN-IRYLVLDEADRMLDMGFEPQ 363
Query: 262 V 262
+
Sbjct: 364 I 364
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 204 (76.9 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 71/198 (35%), Positives = 108/198 (54%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS FAD LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 120 RNLSSKDSFAD-------LGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLGGRHILCAA 172
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y++PL+++L LG + +S + P P LVL P+ L EQV +A
Sbjct: 173 ETGSGKTLGYMLPLLQRL---LGQP-SLDSCRIPAPR---GLVLVPSRELAEQVRAVAQP 225
Query: 189 LSADNGEPLVRAVAVCGGQGWP-----IGK-P--DVIVSTPAALLNNIDPKRRRRMEFVR 240
L + G VR + GG G + K P DV+V+TP AL + + ++ +
Sbjct: 226 LGSSLGLQ-VRELG--GGHGMSRIRLQLSKQPPADVLVATPGALWKGL----KSQLISLE 278
Query: 241 GVKYVVFDEADMLLCGSF 258
+ ++V DEAD LL SF
Sbjct: 279 QLSFLVLDEADTLLDESF 296
Score = 155 (59.6 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 55/200 (27%), Positives = 87/200 (43%)
Query: 352 QYIFVAATLP--INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
Q + V AT P ++ + A L + I+ + LH P +K+ ++ + +V
Sbjct: 325 QLVLVGATFPEGVSQLLSKAACLDSLTT----ITSSKLHCIMPHVKQTFMRLKGAEKVTE 380
Query: 410 LIEAVKE--RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
L++ +K+ R +VF N+ V + IL I+ + RA
Sbjct: 381 LVQILKQHDRAYRTGSAGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 440
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVT 524
+FQ + +CTD A+RG+D V VI DF + D++HR GR R G G V
Sbjct: 441 QSFQRGSQDILLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSKVPGTVI 500
Query: 525 SLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 501 SFVTHPWDVSLVQKIELAAR 520
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 209 (78.6 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 67/244 (27%), Positives = 126/244 (51%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
N T++SL LSD ++++ GF R + +QA ++ P++ G+DV+ AA TGSGKT ++L+P
Sbjct: 153 NKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA 212
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+E L N LV+CP L Q +A L + + + + +
Sbjct: 213 VELLYRVKFTPRNGTG----------VLVICPTRELAIQSYGVAKELLKYHSQTVGKVI- 261
Query: 203 VCGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFV-RGVKYVVFDEADMLLC 255
GG+ + K +++V+TP LL++++ F+ + +K++V DEAD +L
Sbjct: 262 --GGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNG----FIFKNLKFLVMDEADRILE 315
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
+F+ + +++N+ +Q S + + K ++ SLT P D + + E +++EG
Sbjct: 316 QNFEEDLKKILNLLP-KTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKE-VTNEG 373
Query: 316 NFEG 319
+G
Sbjct: 374 LEQG 377
Score = 152 (58.6 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 35/121 (28%), Positives = 62/121 (51%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAA 484
+ MVF +T + ++ + +C + +R T + F + + G+ +CT+ AA
Sbjct: 402 KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAA 461
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARA-GQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+D P+V ++Q D + D++HRVGRTAR G G + T + ++ AAK
Sbjct: 462 RGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLK-AAK 520
Query: 544 L 544
+
Sbjct: 521 I 521
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 191 (72.3 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 63/180 (35%), Positives = 99/180 (55%)
Query: 89 LGLSDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146
LGL R++ AL+ + +P+ VQ+ ++ P+L G+ ++ AAETGSGKT SYL+PL ++L
Sbjct: 131 LGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRL 190
Query: 147 CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
G +S S T PR LVL P+ L EQV +A +L G ++ + + GG
Sbjct: 191 LR--GSDLDSRSF---TAPRG--LVLVPSRELAEQVQAVAQSLGGYLG---LQVIELGGG 240
Query: 207 QGWP------IGKP--DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G +P DV+V+TP AL + + ++ ++ + ++V DE D LL SF
Sbjct: 241 LGMSRLKLQLYRRPAADVLVATPGALWKAL----KSQLISLQHLNFIVLDEVDTLLDESF 296
Score = 169 (64.5 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 60/200 (30%), Positives = 93/200 (46%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
Q + V AT P + V PD+ I+ + LH P +++ ++ + +V L
Sbjct: 325 QLVLVGATFPEGLNQLLSKVTS---PDSLTTITSSKLHCLMPHVRQTFMRLKGADKVTEL 381
Query: 411 IEAVKERLEFG-AETSRT-MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
++ +K++ + E S T +VF N+ V + IL I+ + RA
Sbjct: 382 VQILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQ 441
Query: 469 NFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVT 524
+FQ KG + VCTD A+RG+D +V VI DF + D++HR GR R G G V
Sbjct: 442 SFQ-KGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVI 500
Query: 525 SLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 501 SFVTHPWDVSLVQKIELAAR 520
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 182 (69.1 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 48/129 (37%), Positives = 60/129 (46%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
IEAV ER+ ++F NT V L G H DL ER + LV F
Sbjct: 230 IEAV-ERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRF 288
Query: 471 QEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ V V TD AARG+DI +S VI + + HR+GRT RAG+ GL SL T
Sbjct: 289 ANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTP 348
Query: 530 SNRDLVDTI 538
L+ I
Sbjct: 349 RESRLIAAI 357
Score = 176 (67.0 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 59/189 (31%), Positives = 100/189 (52%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SL L ++R L + G+ + +QA S+ +L+GKDV+ A+TGSGKT ++ + L+ +
Sbjct: 6 FSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSR 65
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS--ADNGEPLVRAVAV 203
L AL R +LVLCP L +QV + L+ DN ++ + +
Sbjct: 66 L-DALSF-------------RVQALVLCPTRELADQVGKELRRLARFTDN----IKILTI 107
Query: 204 CGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
CGG G +G + V++ TP LL+++ RR ++ + ++ +V DEAD +L
Sbjct: 108 CGGVPFGPQLGSLEHGAHVVIGTPGRLLDHL---RRGSLD-LSALRTLVLDEADRMLDMG 163
Query: 258 FQNQVIRLI 266
FQ+ + LI
Sbjct: 164 FQDDISALI 172
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 184 (69.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 58/199 (29%), Positives = 107/199 (53%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++++L LS +++ + F +P+ +Q+AS+ L GKD+V A+TGSGKT +Y++P+
Sbjct: 129 HTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPI 188
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
IE+L + S S K ++L P L QV LS + L +A
Sbjct: 189 IERLLY-----KPSTSTKV--------IILTPTRELALQVYEFGKKLS-HHVNNLNIGLA 234
Query: 203 VCG----GQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCG 256
V G Q + +PD++++TP L+++I R F V+ ++ +V DEAD +L
Sbjct: 235 VGGLNLRQQEEQLKTRPDIVIATPGRLIDHI----RNSPSFSVQDIQVLVIDEADRMLEE 290
Query: 257 SFQNQVIRLINMFRFDEKQ 275
FQ+++ ++++ ++Q
Sbjct: 291 GFQDELTEILSLIPKHKRQ 309
Score = 178 (67.7 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 45/127 (35%), Positives = 71/127 (55%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L A+ +L G +SR +VF + + + +L G++ H L+ E+R + +
Sbjct: 358 DQLKPALLYQLLKGV-SSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNV 416
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
NF+ + V +CTD AARG+DIP + VI D + +LHRVGRTARAG+ G +
Sbjct: 417 KNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITF 476
Query: 527 YTESNRD 533
ES+++
Sbjct: 477 VGESSQE 483
Score = 45 (20.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS 350
F+G+ +E LT+ K + KK+ VRK+ RS
Sbjct: 562 FKGEV-MEQLTKHGKKVNSKKRKANEVRKDEGRS 594
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 272 DEKQLSRMN-ESGVEKPLEMDNSSLTQPDLQDEENLQ---DEYISDEGNFEGDSDVEGL 326
D +QL +N + + E N+ L + D Q+ + + DE I +G + +SD E L
Sbjct: 18 DSEQLQDINPDFKFQIDGETTNT-LEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 184 (69.8 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 58/199 (29%), Positives = 107/199 (53%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++++L LS +++ + F +P+ +Q+AS+ L GKD+V A+TGSGKT +Y++P+
Sbjct: 129 HTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPI 188
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
IE+L + S S K ++L P L QV LS + L +A
Sbjct: 189 IERLLY-----KPSTSTKV--------IILTPTRELALQVYEFGKKLS-HHVNNLNIGLA 234
Query: 203 VCG----GQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCG 256
V G Q + +PD++++TP L+++I R F V+ ++ +V DEAD +L
Sbjct: 235 VGGLNLRQQEEQLKTRPDIVIATPGRLIDHI----RNSPSFSVQDIQVLVIDEADRMLEE 290
Query: 257 SFQNQVIRLINMFRFDEKQ 275
FQ+++ ++++ ++Q
Sbjct: 291 GFQDELTEILSLIPKHKRQ 309
Score = 178 (67.7 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 45/127 (35%), Positives = 71/127 (55%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L A+ +L G +SR +VF + + + +L G++ H L+ E+R + +
Sbjct: 358 DQLKPALLYQLLKGV-SSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNV 416
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
NF+ + V +CTD AARG+DIP + VI D + +LHRVGRTARAG+ G +
Sbjct: 417 KNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITF 476
Query: 527 YTESNRD 533
ES+++
Sbjct: 477 VGESSQE 483
Score = 45 (20.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS 350
F+G+ +E LT+ K + KK+ VRK+ RS
Sbjct: 562 FKGEV-MEQLTKHGKKVNSKKRKANEVRKDEGRS 594
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 272 DEKQLSRMN-ESGVEKPLEMDNSSLTQPDLQDEENLQ---DEYISDEGNFEGDSDVEGL 326
D +QL +N + + E N+ L + D Q+ + + DE I +G + +SD E L
Sbjct: 18 DSEQLQDINPDFKFQIDGETTNT-LEEFDFQENKVKEVDLDEIIKKKGGLKEESDDEEL 75
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 188 (71.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 44/114 (38%), Positives = 60/114 (52%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + K + G++ H D S R K L F+E K + TD AA
Sbjct: 248 QVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RGIDI +SHVI + +A D++HR+GRTARAG GL SL + L+ I
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361
Score = 167 (63.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 66/278 (23%), Positives = 133/278 (47%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ S L L++A+ S + P+ +Q S+ +L+ DV+ A+TG+GKT ++ +P++
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + +P P +LVL P L +QV + G+ + +
Sbjct: 65 QQLISV-----------QPCKPELRALVLTPTRELAQQVHKSF----CHYGQFTDVTIGI 109
Query: 204 C-GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG I + D++++TP LL+ + R + ++ +VFDEAD +L
Sbjct: 110 AYGGVSTKKQISELKVGVDILIATPGRLLDLL----RTESVSLSNIETLVFDEADRMLDM 165
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ--DEENLQDEYISDE 314
F+ ++ + I + KQ + + + +M + L +P + DE+N + + ++
Sbjct: 166 GFKEEIDQ-ITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-EQ 223
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
+ D+D + E S I ++W++V + R+KQ
Sbjct: 224 LVYGVDADRK---RELTSFLIGSRNWKQVLV-FTRTKQ 257
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 188 (71.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 44/114 (38%), Positives = 60/114 (52%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + K + G++ H D S R K L F+E K + TD AA
Sbjct: 248 QVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RGIDI +SHVI + +A D++HR+GRTARAG GL SL + L+ I
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAI 361
Score = 167 (63.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 66/278 (23%), Positives = 133/278 (47%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ S L L++A+ S + P+ +Q S+ +L+ DV+ A+TG+GKT ++ +P++
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + +P P +LVL P L +QV + G+ + +
Sbjct: 65 QQLISV-----------QPCKPELRALVLTPTRELAQQVHKSF----CHYGQFTDVTIGI 109
Query: 204 C-GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG I + D++++TP LL+ + R + ++ +VFDEAD +L
Sbjct: 110 AYGGVSTKKQISELKVGVDILIATPGRLLDLL----RTESVSLSNIETLVFDEADRMLDM 165
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ--DEENLQDEYISDE 314
F+ ++ + I + KQ + + + +M + L +P + DE+N + + ++
Sbjct: 166 GFKEEIDQ-ITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-EQ 223
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
+ D+D + E S I ++W++V + R+KQ
Sbjct: 224 LVYGVDADRK---RELTSFLIGSRNWKQVLV-FTRTKQ 257
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 191 (72.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 68/198 (34%), Positives = 105/198 (53%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS FAD LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 120 RNLSSKGSFAD-------LGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLRGRHILCAA 172
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y++PL+++L LG S + P P LVL P+ L EQV +A
Sbjct: 173 ETGSGKTLGYMLPLLQRL---LGQPSLYTS-RIPAPR---GLVLVPSRELAEQVRAVAQP 225
Query: 189 LSADNGEPLVRAVAVCGGQGWP-----IGK-P--DVIVSTPAALLNNIDPKRRRRMEFVR 240
L + G +R + GG G + K P +V+V+TP AL + + ++ +
Sbjct: 226 LGSSLG---LRVQELGGGHGMSRVRLQLSKHPPAEVLVATPGALWKAL----KGQLISLA 278
Query: 241 GVKYVVFDEADMLLCGSF 258
+ ++V DE D LL SF
Sbjct: 279 QLSFLVLDEVDTLLDESF 296
Score = 168 (64.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 59/201 (29%), Positives = 90/201 (44%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQM--FPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
Q + V AT P G G +L ++ I+ + LH P +K+ ++ + +V
Sbjct: 325 QLVLVGATFP-EG---VGQLLSKVASLDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVTE 380
Query: 410 LIEAVKE--RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
L++ +K+ R T +VF N+ V + IL I+ + RA
Sbjct: 381 LVQILKQHDRAHRTGSTGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIF 440
Query: 468 VNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLV 523
+FQ KG + +CTD A+RG+D V VI DF + D++HR GR R G G V
Sbjct: 441 QSFQ-KGSRDILLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSEVPGTV 499
Query: 524 TSLYTES-NRDLVDTIRRAAK 543
S T + LV I AA+
Sbjct: 500 ISFVTHPWDVSLVQKIELAAR 520
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 201 (75.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 53/209 (25%), Positives = 99/209 (47%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR-LKEKWI 399
R++ + + +Q + +AT P + AG L + + S N HN R + E
Sbjct: 408 RKIIEQIRPDRQVVMWSATWPKEVQALAGDFLND-YIQINIGSMNLSANHNIRQIVEICT 466
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E+ ++ L+ + G ++ +VF T V + +I++ G H D +
Sbjct: 467 EIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKT 526
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER L +F+ K + + TD A+RG+D+ ++ +VI D+ S+ +++HR+GRT R
Sbjct: 527 QNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQ 586
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAK 543
Q G + +T N R+L+ + A +
Sbjct: 587 QLGTAYTFFTPDNAKQARELISVLEEAGQ 615
Score = 164 (62.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 56/200 (28%), Positives = 98/200 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V+++ L +I ++ GF +P+ +Q+ LSG+D+V A+TGSGKT +Y++P I
Sbjct: 237 VSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAI 296
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG---EPLVRA 200
+G+ + P +LVL P L +Q+ ++ D G +P +R
Sbjct: 297 ----VHIGNQPPIIRGEGPI-----ALVLAPTRELAQQI----QSVVRDYGHLCKPEIRH 343
Query: 201 VAVCGGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG P + +VI++TP L++ ++ R R Y+V DEAD +L
Sbjct: 344 TCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLE---NRNTNLQR-CTYLVLDEADRML 399
Query: 255 CGSFQNQVIRLINMFRFDEK 274
F+ Q+ ++I R D +
Sbjct: 400 DMGFEPQIRKIIEQIRPDRQ 419
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 187 (70.9 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 55/188 (29%), Positives = 94/188 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
WK L ++ +E G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 439
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVC 204
+ T +SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 440 ITTLPKIDRIEDSDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRTVAVI 490
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG QG+ + +++++TP L ID R + R YVV DEAD ++ F
Sbjct: 491 GGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMGF 546
Query: 259 QNQVIRLI 266
+ V +++
Sbjct: 547 EPDVQKIL 554
Score = 177 (67.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 60/216 (27%), Positives = 104/216 (48%)
Query: 338 KDWRRVRKNYQRSK----QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393
+D ++ +N++ K Q + AT+P ++ A + L++ P +I G+ H R
Sbjct: 570 EDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRR--PAVVYI-GSAGKPHE-R 625
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+++K I ++ + L+E L G E ++F N + K L+ G
Sbjct: 626 VEQKVILMSEGEKRKKLLEV----LASGFEPP-IIIFVNQKKGCDVLAKSLEKMGYNACT 680
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H E+R L N + + V TD A RGIDI +VS V+ D A + D++HR+G
Sbjct: 681 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIG 740
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG+ G+ + T+ + + +++A L PV
Sbjct: 741 RTGRAGKSGVAMTFLTKEDSSVFYDLKQAI-LESPV 775
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 208 (78.3 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 63/210 (30%), Positives = 97/210 (46%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+R+ +Q + AT P ++ A + P I N R+ + +EV
Sbjct: 280 IRETDASKRQTLMFTATWPKEVRELASTFMNN--PIKVSIGNTDQLTANKRITQI-VEV- 335
Query: 403 VDTQVDA--LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
VD + L+E +K+ + + ++FA V + LK G H DLS
Sbjct: 336 VDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQ 395
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
++R + L F+ K + + TD AARG+DIPNV VI F + D++HR+GRT RAGQ
Sbjct: 396 QQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQ 455
Query: 520 YGLVTSLYTESNRDLVDTIRRAAK-LGQPV 548
G +L+TE + L + QPV
Sbjct: 456 TGTAHTLFTEQEKHLAGGLVNVLNGANQPV 485
Score = 146 (56.5 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 61/211 (28%), Positives = 97/211 (45%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D I+A E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D
Sbjct: 122 DSSIQA-EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MND 177
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----Q 207
+ LV+ P L Q+ L+ G ++ V GG Q
Sbjct: 178 QKKRGIQV---------LVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQ 225
Query: 208 GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLIN 267
+ K V+V+TP LL D + ++ + V Y+V DEAD +L F+ + +I
Sbjct: 226 RIQLKKSQVVVATPGRLL---DLLQEGSVDLSQ-VNYLVLDEADRMLEKGFEEDIKNIIR 281
Query: 268 MFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
++Q + ++ E+ ++ + P
Sbjct: 282 ETDASKRQTLMFTATWPKEVRELASTFMNNP 312
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 190 (71.9 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 62/191 (32%), Positives = 103/191 (53%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SLGLS+ L+RA+E +G+ +P+ VQ ++ VL G+D+++AA+TG+GKT + +P++
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E+L G + S P PR LVL P L QV + D ++ V+
Sbjct: 61 ERLFPN-GVPDKSQRHG-PRQPRV--LVLTPTRELAAQVHESFKLYARD-----LKFVSA 111
Query: 204 C--GGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
C GG G P + DV+V+ P LL D + ++ V+ +V DEAD +L
Sbjct: 112 CIFGGVGMNPQVQAMSRGVDVLVACPGRLL---DLAGQGSVDLSH-VEILVLDEADRMLD 167
Query: 256 GSFQNQVIRLI 266
F + V +++
Sbjct: 168 MGFVHDVKKVL 178
Score = 168 (64.2 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 40/121 (33%), Positives = 58/121 (47%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VF T + + L G+ H + S R K L +F K G + V TD
Sbjct: 251 QVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADF--KAGDVRIMVATDI 308
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
AARG+DI + HV+ + D++HR+GRT RAG+ G SL L+ +I R
Sbjct: 309 AARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
Query: 543 K 543
K
Sbjct: 369 K 369
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 193 (73.0 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 48/141 (34%), Positives = 76/141 (53%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E ++ +VF T +T+ L+ G H D +ER L
Sbjct: 373 DRMIKHLEKIME--NRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVL 430
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ +++HVI D+ ++ D++HR+GRT RAG G +
Sbjct: 431 NEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITF 490
Query: 527 YTESN----RDLVDTIRRAAK 543
+T N RDLV TI AK
Sbjct: 491 FTTDNAKQARDLV-TILSEAK 510
Score = 163 (62.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 59/197 (29%), Positives = 93/197 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF +P+ +Q+ LSG+DVV AETGSGKT SY +P I
Sbjct: 141 TFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIV 200
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L Q+ A +S +R V
Sbjct: 201 HI----------NAQPLLAPGDGPIVLILAPTRELAVQI--QAE-ISKFGKSSRIRNTCV 247
Query: 204 CGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ ++ R +R V Y+V DEAD +L
Sbjct: 248 YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTN----LRRVTYLVLDEADRMLDMG 303
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ ++I+ R D +
Sbjct: 304 FEPQIRKIISQIRPDRQ 320
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 200 (75.5 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 437 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 496
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 497 ARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLV 556
Query: 540 RA 541
A
Sbjct: 557 EA 558
Score = 157 (60.3 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 56/193 (29%), Positives = 102/193 (52%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIE 144
+ + + + ++ +E + + RP+ VQ ++ P++ GK D++ A+TGSGKT ++L+P++
Sbjct: 177 FSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILS 235
Query: 145 KLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
++ T G E + KE + P SLVL P L Q+ A S + VR
Sbjct: 236 QIYTD-GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VR 291
Query: 200 AVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD +
Sbjct: 292 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADRM 347
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ R++
Sbjct: 348 LDMGFEPQIRRIV 360
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 200 (75.5 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 440 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 500 ARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLV 559
Query: 540 RA 541
A
Sbjct: 560 EA 561
Score = 157 (60.3 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 56/193 (29%), Positives = 102/193 (52%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIE 144
+ + + + ++ +E + + RP+ VQ ++ P++ GK D++ A+TGSGKT ++L+P++
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query: 145 KLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
++ T G E + KE + P SLVL P L Q+ A S + VR
Sbjct: 239 QIYTD-GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VR 294
Query: 200 AVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD +
Sbjct: 295 PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADRM 350
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ R++
Sbjct: 351 LDMGFEPQIRRIV 363
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 205 (77.2 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 47/128 (36%), Positives = 66/128 (51%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+ R +VF T +TK L+ G+ C H D EER L F+ K + + TD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL-VTSLYTESNRDLVDTIRR 540
A+RG+DI NV +VI DF D++HR+GRT RAG +G T L + R D ++
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478
Query: 541 AAKLGQPV 548
+ QPV
Sbjct: 479 LRESEQPV 486
Score = 148 (57.2 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 53/199 (26%), Positives = 92/199 (46%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V+ +G D +I++L+N+ P+ +Q LSGKD++ AETGSGKT ++++P
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N P LVL P L EQ+ + S E +R
Sbjct: 173 VHILA----QPNLKYGDGPIV-----LVLAPTRELAEQIRQECIKFST---ESKIRNTCA 220
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + + + ++++ P L++ ++ M V Y+V DEAD +L
Sbjct: 221 YGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMR----VTYLVLDEADKMLDMG 276
Query: 258 FQNQVIRLINMFRFDEKQL 276
F+ Q+ ++++ R D + L
Sbjct: 277 FELQIRKIVDQIRPDRQTL 295
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 205 (77.2 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 47/128 (36%), Positives = 66/128 (51%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+ R +VF T +TK L+ G+ C H D EER L F+ K + + TD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL-VTSLYTESNRDLVDTIRR 540
A+RG+DI NV +VI DF D++HR+GRT RAG +G T L + R D ++
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478
Query: 541 AAKLGQPV 548
+ QPV
Sbjct: 479 LRESEQPV 486
Score = 148 (57.2 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 53/199 (26%), Positives = 92/199 (46%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V+ +G D +I++L+N+ P+ +Q LSGKD++ AETGSGKT ++++P
Sbjct: 113 VSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAF 172
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N P LVL P L EQ+ + S E +R
Sbjct: 173 VHILA----QPNLKYGDGPIV-----LVLAPTRELAEQIRQECIKFST---ESKIRNTCA 220
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + + + ++++ P L++ ++ M V Y+V DEAD +L
Sbjct: 221 YGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMR----VTYLVLDEADKMLDMG 276
Query: 258 FQNQVIRLINMFRFDEKQL 276
F+ Q+ ++++ R D + L
Sbjct: 277 FELQIRKIVDQIRPDRQTL 295
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 193 (73.0 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 72/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 168 (64.2 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 44/133 (33%), Positives = 65/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K +++F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
Score = 38 (18.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEAKLP--QQSHSAFGAASSSSGFGKSAPPQLPS 58
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 201 (75.8 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 56/207 (27%), Positives = 102/207 (49%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q + +AT P + A L Q F + G+ N R+ + +E
Sbjct: 294 RKIIGQIRPDRQTLMWSATWPKEVRNMAADFL-QDFIQVN--IGSLDLSANHRITQI-VE 349
Query: 401 VTVDTQV-DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V +++ D +I +++ ++ ++ ++F T +T+ L+ G H D
Sbjct: 350 VVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQ 409
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG
Sbjct: 410 QNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAG 469
Query: 519 QYGLVTSLYTESN----RDLVDTIRRA 541
G + +T N RDL+ ++ A
Sbjct: 470 AKGTAITFFTTENSKQARDLLGVLQEA 496
Score = 152 (58.6 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 58/199 (29%), Positives = 92/199 (46%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 126 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 185
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L Q+ A +S +R V
Sbjct: 186 HI----------NAQPLLAPGDGPIVLILAPTRELAVQI--QAE-ISKFGKSSRIRNTCV 232
Query: 204 CGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 233 YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLDMG 288
Query: 258 FQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 289 FEPQIRKIIGQIRPDRQTL 307
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 184 (69.8 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 65/240 (27%), Positives = 114/240 (47%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W ++D+L+ + G+ P+ VQ AS+ L +DVV AETGSGKT ++L+P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY 229
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ + D +K P L+L P L Q+ + A G + + + G
Sbjct: 230 ILSI--DENYLKYEKISNEP--VGLILAPTRELALQITKEAEKFCKKLG---YQVLPIIG 282
Query: 206 GQGWP--IGKPD-----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + I K D +IV+TP L+++I+ R++ + +V DEAD ++ F
Sbjct: 283 GHHYQDTINKIDQTGVHLIVATPGRLVDSIE----RKIVDLSKCYCLVMDEADRMIDMGF 338
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGV---EKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
+ + ++++ EKQLS + + EK M ++ P + E L +Y+ D G
Sbjct: 339 EKDLNKVLDKLP-TEKQLSSTIDGRIFHLEKRSTMMFTATISPTV---EKLTKKYLIDPG 394
Score = 170 (64.9 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 41/145 (28%), Positives = 73/145 (50%)
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
T T+ + LI+ ++ E ++FAN ++++ L + I H S +
Sbjct: 420 TEATKFNKLIKIIRSHWRV-TENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQD 478
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
R + + NF+ + V + TD AARGIDIPNV+ VI +++HR+GRT RAG
Sbjct: 479 MREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNL 538
Query: 521 GLVTSLYTESNRDLVDTIRRAAKLG 545
G + ++ + ++ +++ K G
Sbjct: 539 GESFTFISDQDTEIFTPLKKFLKKG 563
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
+R N ++K +S +++ G E+P + +S+
Sbjct: 167 LRYWNEGSINDKLVSIISQLGYEEPTSVQRASI 199
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 184 (69.8 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 65/240 (27%), Positives = 114/240 (47%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W ++D+L+ + G+ P+ VQ AS+ L +DVV AETGSGKT ++L+P++
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY 229
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ + D +K P L+L P L Q+ + A G + + + G
Sbjct: 230 ILSI--DENYLKYEKISNEP--VGLILAPTRELALQITKEAEKFCKKLG---YQVLPIIG 282
Query: 206 GQGWP--IGKPD-----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + I K D +IV+TP L+++I+ R++ + +V DEAD ++ F
Sbjct: 283 GHHYQDTINKIDQTGVHLIVATPGRLVDSIE----RKIVDLSKCYCLVMDEADRMIDMGF 338
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGV---EKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
+ + ++++ EKQLS + + EK M ++ P + E L +Y+ D G
Sbjct: 339 EKDLNKVLDKLP-TEKQLSSTIDGRIFHLEKRSTMMFTATISPTV---EKLTKKYLIDPG 394
Score = 170 (64.9 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 41/145 (28%), Positives = 73/145 (50%)
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
T T+ + LI+ ++ E ++FAN ++++ L + I H S +
Sbjct: 420 TEATKFNKLIKIIRSHWRV-TENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQD 478
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
R + + NF+ + V + TD AARGIDIPNV+ VI +++HR+GRT RAG
Sbjct: 479 MREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNL 538
Query: 521 GLVTSLYTESNRDLVDTIRRAAKLG 545
G + ++ + ++ +++ K G
Sbjct: 539 GESFTFISDQDTEIFTPLKKFLKKG 563
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
+R N ++K +S +++ G E+P + +S+
Sbjct: 167 LRYWNEGSINDKLVSIISQLGYEEPTSVQRASI 199
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 194 (73.4 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 72/261 (27%), Positives = 125/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVCGGQ 207
KE P P ++++CP LC+Q+ +A G+ +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQI----HAEGKRFGKAYNLRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 52 (23.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ T E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQETYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEPKLP--QQSHSAFGATSSSSGFGKSAPPQLPS 58
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 185 (70.2 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 59/194 (30%), Positives = 106/194 (54%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ + L D L+ ++++ + +P+ VQ +++ +L +D++ A+TGSGKT ++L P+I
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307
Query: 145 KLCTALGDSENSNSDKEPTPPRA--P-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+ L + + +P PRA P +LVL P L +Q+ AN S G P V +V
Sbjct: 308 GIL--LDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSY--GSP-VSSV 362
Query: 202 AVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG Q + + D++V+T L +D R R+ + +KY+V DEAD +L
Sbjct: 363 VIYGGAEVFHQINELDRGCDILVATTGRL---VDLLMRGRVSLSK-IKYLVLDEADRMLD 418
Query: 256 GSFQNQVIRLINMF 269
F+ Q+ ++I+ F
Sbjct: 419 MGFEPQIRQIISEF 432
Score = 171 (65.3 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 39/106 (36%), Positives = 55/106 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCTDAAARG 486
++F T + +T L C H DL+ ER L +F+ F V TD A+RG
Sbjct: 508 LIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRG 567
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+ I NV+ VI D T ++HR+GRT RAG+ GL S + E N+
Sbjct: 568 LHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNK 613
Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 157 NSDKEPTPPRAPSLVLCPN 175
N +E PPR S PN
Sbjct: 133 NGPREQGPPRGNSYSYSPN 151
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 303 (111.7 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 137/490 (27%), Positives = 232/490 (47%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L + D I AETGSGKT +YL+PL
Sbjct: 152 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPL 211
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS----LVLCPNVVLCEQV-VRMANALSADNGEPL 197
++++ AL ++N K T S ++L P LC+Q+ V + L +
Sbjct: 212 VQRIM-ALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAHW--- 267
Query: 198 VRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ A V GG+ K +++V+TP L ++++ + ++ V V+++V DE D
Sbjct: 268 IVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE--NTQALD-VSNVRWLVLDEGD 324
Query: 252 MLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310
L+ F+ ++ +I+ + D +Q SR+ ++ + +++L + + L +
Sbjct: 325 RLMELGFEKELQEIIS--KLDARQRPSRIPGVPAKRATILCSATLKM----NVQKLGEIS 378
Query: 311 ISDEGNFEGD-SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA-----TLPING 364
+ D + + D +D +G E+T + KD R Q + Y VAA TL
Sbjct: 379 LKDAVHIKADPADEDG--EKTA----EDKDGDAFRVPAQLKQSYAIVAAKLRLVTLTAFM 432
Query: 365 KKT---AGAVLKQMFPDADWISGNYLHFH--NPRLKEKWIEVTVDTQVDALIEAVKERLE 419
K+T G+V+K + + S N+ HF +L E+ D D+ E KE+ +
Sbjct: 433 KRTFMRKGSVMKAIIFVSCADSVNF-HFEVFTRKLAEQLEGDNPDEGSDSEHEKEKEKEK 491
Query: 420 FGAETSRTMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSLEERAKTLVNFQEKG--GV 476
T A+T V T ++ + Y H L R TL +F + V
Sbjct: 492 ---PTP-----ASTHGTVAPATAFSNSSNAVTMYKLHGSLPQHVRTSTLSSFAKNRDPSV 543
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG-LVTSLYTESNRDLV 535
+CTD A+RG+D+PNV V++ D A SA + LHR+GRTAR G+ G + L + V
Sbjct: 544 LICTDVASRGLDLPNVDLVVEYDPAFSADEHLHRIGRTARLGRDGRALVFLLPGCEENYV 603
Query: 536 DTIRRAAKLG 545
+ ++R + G
Sbjct: 604 EILKRGYRDG 613
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 190 (71.9 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 71/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V +SG+D++ A+TGSGKT +++ P++ +
Sbjct: 254 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 311
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 312 --------DQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN----LRSVAVYGGG 359
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 360 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVTYLVFDEADRMFDMGFEYQ 415
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 416 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS 475
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 476 GPSKWNWLTRRLVEFTSSGSV 496
Score = 165 (63.1 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 455 HKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D+ ER K + F++KG + V TD AARG+DIP++ VI D A HR+GR
Sbjct: 524 HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 583
Query: 514 TARAGQYGLVTSLYTESNRDLV-DTIRRAAKLGQPV 548
T RAG+ G+ +L T + + D +R Q V
Sbjct: 584 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 619
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 193 (73.0 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 72/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 47 (21.6 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
Score = 38 (18.4 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEAKLP--QQSHSAFGAASSSSGFGKSAPPQLPS 58
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 193 (73.0 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 72/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 47 (21.6 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
Score = 37 (18.1 bits), Expect = 5.6e-08, Sum P(3) = 5.6e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEPKLP--QQSHSAFGATSSSSGFGKSAPPQLPS 58
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 193 (73.0 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 72/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 47 (21.6 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
Score = 37 (18.1 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEPKLP--QQSHSAFGATSSSSGFGKSAPPQLPS 58
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 193 (73.0 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 72/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 493 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 551
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 552 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 611
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 612 DLVRNLEGANQHV 624
Score = 48 (22.0 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 23/94 (24%), Positives = 38/94 (40%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSDVEGLTEETKS-GSIKKKDWRRVRKNY 347
N E DSD + K + D + +NY
Sbjct: 179 DNLEYDSDGNPIAPSKKIIDPLPPIDHSELDRNY 212
Score = 37 (18.1 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+GK +P ++ +A G + +S+ + PP+ PS
Sbjct: 23 AGKKEEPKLP--QQSHSAFGATSSSSGFGKTAPPQLPS 58
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 187 (70.9 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 52/181 (28%), Positives = 88/181 (48%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407
+ +Q + +AT P + ++ A LK D +++ + +++ +++VT +
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLKV---DYLFVAVGVVGGACTDVEQTFLQVTKFNKR 421
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ L++ ++ G+E RTMVF T + L + H D ER K L
Sbjct: 422 EQLLDLLRT---IGSE--RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKAL 476
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+F+ K V V T A+RG+DIP+V HV+ D + D++HR+GRT R G G S
Sbjct: 477 ADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSF 536
Query: 527 Y 527
Y
Sbjct: 537 Y 537
Score = 166 (63.5 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 55/190 (28%), Positives = 101/190 (53%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPL 142
+T++ L + L + SG+ +P+ VQ + P++S G+D++ A+TGSGKT ++L+P+
Sbjct: 181 MTFEEAKLCESLENNISRSGYVKPTPVQKYGL-PIISAGRDLMACAQTGSGKTAAFLLPI 239
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+++L + D ++ E P A +++ P L Q+ + A S VR V
Sbjct: 240 LQQL---MADGVAASRFSEIQEPEA--VIVAPTRELINQIYQEARKFSFGT---CVRPVV 291
Query: 203 VCGG--QGWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG G+ + + + V+ TP LL+ I R ++ + V+++V DEAD +L
Sbjct: 292 VYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIG---RGKVGLSK-VRHLVLDEADRMLDM 347
Query: 257 SFQNQVIRLI 266
F+ + RL+
Sbjct: 348 GFEPDMRRLV 357
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 184 (69.8 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 62/193 (32%), Positives = 103/193 (53%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SLGLS+ L+ A+E +G+ +P+ VQ ++ VL G+D+++AA+TG+GKT + +P++
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTP-PRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
E+L N + DK PR P LVL P L QV + D ++ V
Sbjct: 61 ERLFP------NGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARD-----LKFV 109
Query: 202 AVC--GGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ C GG G P + DV+V+ P LL D + ++ V+ +V DEAD +
Sbjct: 110 SACIFGGVGMNPQVQAMARGVDVLVACPGRLL---DLAGQGSVDLSH-VEILVLDEADRM 165
Query: 254 LCGSFQNQVIRLI 266
L F + V +++
Sbjct: 166 LDMGFVHDVKKVL 178
Score = 169 (64.5 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 38/119 (31%), Positives = 58/119 (48%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + + L G+ H + S R K L +F+ + + V TD AA
Sbjct: 251 QVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAA 310
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + HV+ + D++HR+GRT RAG+ G SL L+ +I R K
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTK 369
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 188 (71.2 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 40/128 (31%), Positives = 67/128 (52%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S+ ++F T VT+ L+ G H D + ER + L F+ + + TD A
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+D+ ++ V+ DF + D++HR+GRT RAG G+ + +T N R+LV ++
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQ 530
Query: 540 RAAKLGQP 547
A ++ P
Sbjct: 531 EAGQVVPP 538
Score = 164 (62.8 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 51/190 (26%), Positives = 91/190 (47%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D ++ A+ GF P+ +QA L G+D++ AETGSGKT +YL+P + +
Sbjct: 174 DNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA---- 229
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWP 210
D P L+L P L Q+ + +G VR+ + GG +G
Sbjct: 230 QPRLGQDDGPIV-----LILAPTRELAVQIQEESRKFGLRSG---VRSTCIYGGAPKGPQ 281
Query: 211 IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
I +++++TP L++ ++ + ++ V Y+V DEAD +L F+ Q+ +++
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHTN----LKRVTYLVLDEADRMLDMGFEPQIRKIV 337
Query: 267 NMFRFDEKQL 276
+ R D + L
Sbjct: 338 SQIRPDRQTL 347
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 194 (73.4 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 64/199 (32%), Positives = 103/199 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ G + L L+NSG+ P+ +Q + L G+D+V +A+TGSGKT ++L+P+I
Sbjct: 209 IEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVI 268
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
K+ L ++E TP +L+L P L Q+ R A L A G P +R V +
Sbjct: 269 MKV---LNETE--------TPS---ALILAPTRELAIQIERQAKELMA--GLPNMRTVLL 312
Query: 204 CGGQGWPIG----KPDV--IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG P K V I++TP LL + R+ ++ + G+K VV DE D +L
Sbjct: 313 VGGLPLPPQLHRLKQSVKVIIATPGRLLEIL---RQSSVQ-LHGIKIVVVDEVDTMLKMG 368
Query: 258 FQNQVIRLINMFRFDEKQL 276
FQ QV+ ++ D + +
Sbjct: 369 FQQQVLDILEDISHDHQTI 387
Score = 158 (60.7 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 53/206 (25%), Positives = 88/206 (42%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+ ++ Q I V+AT+P+ + A +L I L N R W+E
Sbjct: 376 ILEDISHDHQTILVSATIPVGIEHLANQLLHNFVRIT--IGEKNLPCSNVRQIILWVEEP 433
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANT-VDAVYAVTKILKTAGIECYCYHKDLSLE 461
++ L E + ++ F +VF + + A + K G++C H + S
Sbjct: 434 --SKKKKLFEILNDKKLFKPPV---LVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQV 488
Query: 462 ERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
ER L QEK V V T RG+D+ NV V+ D +S +++H+VGR R G
Sbjct: 489 ERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHS 548
Query: 521 GLVTSLYTESNRDLV-DTIRRAAKLG 545
G + +++ L D ++R G
Sbjct: 549 GTAITFINNNSKKLFWDVVKRVKPTG 574
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 189 (71.6 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 47/125 (37%), Positives = 70/125 (56%)
Query: 428 MVFAN---TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAA 483
++F N T + +Y++ ++L+ E H ++ ER +L F+ E + V TD A
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTEL---HSEMVQRERINSLGRFRAEAAKILVATDVA 318
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI--RRA 541
+RG+DIP+V VI D D++HRVGRTARAG+ G S+ TE + DLV I R
Sbjct: 319 SRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVG 378
Query: 542 AKLGQ 546
KL +
Sbjct: 379 TKLSE 383
Score = 158 (60.7 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 55/183 (30%), Positives = 89/183 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+S LI L+ P+ +Q + +L G++ + A+TGSGKT ++ +P+IE
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K K+P+ A L+L P L Q+ AL A+ L A+ V
Sbjct: 68 KW------------SKDPSGIFA--LILTPTRELAIQIDEQFAALGANLN--LKHALIVG 111
Query: 205 G----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K P V+V+TP L + I + +R +K++V DEAD LL +F
Sbjct: 112 GMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFA 171
Query: 260 NQV 262
+ +
Sbjct: 172 DDL 174
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 193 (73.0 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++F T +T L + H D + ER + L F+ + V T AAR
Sbjct: 414 TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAAR 473
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
G+DIPNV+HVI D + D++HR+GRT RAG G+ TS + +N+++V
Sbjct: 474 GLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIV 523
Score = 158 (60.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 55/185 (29%), Positives = 89/185 (48%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ + F +P+ VQ S+ V G+D++ A+TGSGKT +L PL +L +
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220
Query: 151 GDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
+ + PS LVL P L Q+ A + + VR V GG
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSW---VRPCVVYGGA-- 275
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
PIG D++V+TP L N++ R ++ +KY+V DEAD +L F+ Q
Sbjct: 276 PIGNQMREVDRGCDLLVATPGRL-NDL--LERGKVSLAN-IKYLVLDEADRMLDMGFEPQ 331
Query: 262 VIRLI 266
+ ++
Sbjct: 332 IRHIV 336
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 188 (71.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 57/188 (30%), Positives = 98/188 (52%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+ L+ L++A+ GF P+ +Q S+ +L G D+V A TGSGKT ++++P+I+K
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L GD + RA ++L P L Q ++ S G L R + + G
Sbjct: 292 L----GDHSTT------VGVRA--VILSPTRELAIQTFKVVKDFS--QGTQL-RTILIVG 336
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++++ M + V+Y+VFDEAD L F
Sbjct: 337 GDSMEDQFTDLARNPDIIIATPGRLMHHL---LETGMSLSK-VQYIVFDEADRLFEMGFN 392
Query: 260 NQVIRLIN 267
Q+ +++
Sbjct: 393 EQLTEILS 400
Score = 170 (64.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 44/103 (42%), Positives = 57/103 (55%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T++F +T V + +L+ AGI H L R L F+ + GV V TD A
Sbjct: 498 SSTIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLA 557
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
ARGIDIP + +VI DF F+HRVGR ARAG+ G+ SL
Sbjct: 558 ARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSL 600
Score = 48 (22.0 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 272 DEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETK 331
D + +MNE+ E + D+ D ++EEN +DE ++ N + +++ + K
Sbjct: 814 DNNKDIKMNENDDEN--DDDDEEGENDDDEEEENEKDEDDEEDEN-KNKFNIK-IESSDK 869
Query: 332 SGSIKKKDWRRVRKNYQRSKQYIFVAATLPIN 363
+ + KKK + R + R + F++AT P N
Sbjct: 870 NDNNKKK--LKSRSS-SRDPNF-FISAT-PEN 896
Score = 47 (21.6 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 15/73 (20%), Positives = 39/73 (53%)
Query: 274 KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSG 333
K+L ++ E+ E+ L + S+ + +D + +++ +D+ + EG++D + EE +
Sbjct: 790 KRLLQLTENITEEMLRSNKSNDNNDNNKDIKMNENDDENDDDDEEGEND-DDEEEENEKD 848
Query: 334 SIKKKDWRRVRKN 346
++D + + N
Sbjct: 849 EDDEEDENKNKFN 861
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 182 (69.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 53/183 (28%), Positives = 99/183 (54%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
SLGLS +++A+E G+ PS +Q ++ VL+GKDV+ AA+TG+GKT + +P++E L
Sbjct: 5 SLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELL- 63
Query: 148 TALGDSENSNSDKEP--TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
A G +N + TP R + + NV+L + + + +A+ + + +C
Sbjct: 64 -AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
G D++V+TP L+ D + ++F + ++ +V DEAD +L F + ++
Sbjct: 123 GA-------DILVATPGRLM---DLYNQNAVKFDQ-LEILVLDEADRMLDMGFIRDIHKI 171
Query: 266 INM 268
+ +
Sbjct: 172 LKL 174
Score = 164 (62.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
V + D L++ VKE + +VF T + L G+ H + S
Sbjct: 227 VKKKPDMLVKLVKE-----GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGA 281
Query: 463 RAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R + L +F+ + + V TD AARGIDIP + V+ + A D++HR+GRT RAG+ G
Sbjct: 282 RTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVG 341
Query: 522 LVTSL 526
SL
Sbjct: 342 KAISL 346
Score = 39 (18.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 270 RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
R + L R+N +G E ++ S L L+ ++ + + + G +G
Sbjct: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKG 409
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 182 (69.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 53/183 (28%), Positives = 99/183 (54%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
SLGLS +++A+E G+ PS +Q ++ VL+GKDV+ AA+TG+GKT + +P++E L
Sbjct: 5 SLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELL- 63
Query: 148 TALGDSENSNSDKEP--TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
A G +N + TP R + + NV+L + + + +A+ + + +C
Sbjct: 64 -AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
G D++V+TP L+ D + ++F + ++ +V DEAD +L F + ++
Sbjct: 123 GA-------DILVATPGRLM---DLYNQNAVKFDQ-LEILVLDEADRMLDMGFIRDIHKI 171
Query: 266 INM 268
+ +
Sbjct: 172 LKL 174
Score = 164 (62.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
V + D L++ VKE + +VF T + L G+ H + S
Sbjct: 227 VKKKPDMLVKLVKE-----GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGA 281
Query: 463 RAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R + L +F+ + + V TD AARGIDIP + V+ + A D++HR+GRT RAG+ G
Sbjct: 282 RTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVG 341
Query: 522 LVTSL 526
SL
Sbjct: 342 KAISL 346
Score = 39 (18.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 270 RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
R + L R+N +G E ++ S L L+ ++ + + + G +G
Sbjct: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKG 409
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 188 (71.2 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 58/213 (27%), Positives = 108/213 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + + +Q ++ +AT P K+ K ++ I G+ N +++ ++
Sbjct: 268 RKIVSHIRPDRQTLYWSATWP---KEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQI-VD 323
Query: 401 VTVDTQ-VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V ++Q + L++ +++ ++ G SR +VF +T +T+ L+ G H D S
Sbjct: 324 VISESQKYNKLVKLLEDIMD-G---SRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKS 379
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER L F+ K + TD AARG+D+ +V +VI DF S D++HR+GRT RAG
Sbjct: 380 QAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T +N ++L + ++ A + P
Sbjct: 440 AKGTAYTFFTVANARFAKELTNILQEAGQKVSP 472
Score = 159 (61.0 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 51/199 (25%), Positives = 97/199 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ +G D ++ ++ +GF P+ +Q+ + G+D++ AETGSGKT SYL+P I
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P LVL P L Q+ + A+ + + ++ +
Sbjct: 160 HV----------NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSK---IKTTCI 206
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K +++++TP L++ ++ +R V Y+V DEAD +L
Sbjct: 207 YGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTN----LRRVTYLVLDEADRMLDMG 262
Query: 258 FQNQVIRLINMFRFDEKQL 276
F Q+ ++++ R D + L
Sbjct: 263 FDPQIRKIVSHIRPDRQTL 281
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 174 (66.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 51/167 (30%), Positives = 81/167 (48%)
Query: 390 HNPRLKEKWIEVTVDTQVDALIEAV-----KERLEF--GAETSR-TMVFANTVDAVYAVT 441
H+P L E T ++ ++ V +E L F G++ R +VF T ++
Sbjct: 214 HSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLS 273
Query: 442 KILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADF 500
+ L++ G+ H + S R + L F++ K V V TD AARG+DI + HVI +
Sbjct: 274 QQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFEL 333
Query: 501 ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
+A D++HRVGRT RA G+ SL + L+ I + + P
Sbjct: 334 PDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMP 380
Score = 171 (65.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 62/224 (27%), Positives = 110/224 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++ LGLS L+RA+ G+ P+ VQ ++ +L +DV++ A+TG+GKT + +PL+
Sbjct: 10 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + + S P +L+L P L QV A PL +A V
Sbjct: 70 QRLFVSRPPLQRS------AKPVIRALILTPTRELAVQVFECVRAYG--KYLPL-KATVV 120
Query: 204 CGGQGW-P-IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG P I D++V+TP LL+ ++ + + R V++ V DEAD +L
Sbjct: 121 HGGVSIKPQINHLRRGVDILVATPGRLLDLVN---QGVLNLSR-VEFFVLDEADRMLDMG 176
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
F + R++ + E + + + + K + E+ + L P L
Sbjct: 177 FLPDIRRILKLL--PESRQNLLFSATFSKEIKELTDKLLHSPAL 218
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 174 (66.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 51/167 (30%), Positives = 81/167 (48%)
Query: 390 HNPRLKEKWIEVTVDTQVDALIEAV-----KERLEF--GAETSR-TMVFANTVDAVYAVT 441
H+P L E T ++ ++ V +E L F G++ R +VF T ++
Sbjct: 214 HSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLS 273
Query: 442 KILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADF 500
+ L++ G+ H + S R + L F++ K V V TD AARG+DI + HVI +
Sbjct: 274 QQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFEL 333
Query: 501 ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
+A D++HRVGRT RA G+ SL + L+ I + + P
Sbjct: 334 PDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMP 380
Score = 171 (65.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 62/224 (27%), Positives = 110/224 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++ LGLS L+RA+ G+ P+ VQ ++ +L +DV++ A+TG+GKT + +PL+
Sbjct: 10 MSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLL 69
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + + S P +L+L P L QV A PL +A V
Sbjct: 70 QRLFVSRPPLQRS------AKPVIRALILTPTRELAVQVFECVRAYG--KYLPL-KATVV 120
Query: 204 CGGQGW-P-IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG P I D++V+TP LL+ ++ + + R V++ V DEAD +L
Sbjct: 121 HGGVSIKPQINHLRRGVDILVATPGRLLDLVN---QGVLNLSR-VEFFVLDEADRMLDMG 176
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
F + R++ + E + + + + K + E+ + L P L
Sbjct: 177 FLPDIRRILKLL--PESRQNLLFSATFSKEIKELTDKLLHSPAL 218
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 177 (67.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/231 (30%), Positives = 111/231 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+ L L G+ P+ VQAA++ VLSG+DV+ A TGSGKT ++ +PL++
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV-RMANALSADNGEPLVRAVAV 203
+L SE ++DK R LVL P L +QV + S NG+ ++ VA
Sbjct: 70 RL------SEAKSADKSAGVVRC--LVLVPTRELAQQVADSFLSYASHFNGQ--LKIVAA 119
Query: 204 CGG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG Q G DV+V+TP LL+ + + + V V DEAD +L
Sbjct: 120 FGGVSVNLQMQSLRAGA-DVLVATPGRLLDLLASNALKLTQ----VSAFVLDEADRMLSL 174
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP---DLQDEE 304
F ++ +++ +KQ + + E+ + L QP LQ E+
Sbjct: 175 GFTEELEQVLAALP-RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQ 224
Score = 168 (64.2 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 55/197 (27%), Positives = 86/197 (43%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
R KQ + +AT P + +L Q P L +H +E IE V T
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQ--P---------LEYHLQSEQESTIEQRVITVNR 237
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
A+ L + S+ ++F + + + + L GI +H D + R + L
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ + V + TD AARGIDI + VI D S D++HR+GR+ RAG+ GL +L
Sbjct: 298 GFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357
Query: 528 TESNRDLVDTIRRAAKL 544
+ I + K+
Sbjct: 358 SHEEYHHFGVIEKKNKI 374
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 177 (67.4 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/231 (30%), Positives = 111/231 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+ L L G+ P+ VQAA++ VLSG+DV+ A TGSGKT ++ +PL++
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV-RMANALSADNGEPLVRAVAV 203
+L SE ++DK R LVL P L +QV + S NG+ ++ VA
Sbjct: 70 RL------SEAKSADKSAGVVRC--LVLVPTRELAQQVADSFLSYASHFNGQ--LKIVAA 119
Query: 204 CGG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG Q G DV+V+TP LL+ + + + V V DEAD +L
Sbjct: 120 FGGVSVNLQMQSLRAGA-DVLVATPGRLLDLLASNALKLTQ----VSAFVLDEADRMLSL 174
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP---DLQDEE 304
F ++ +++ +KQ + + E+ + L QP LQ E+
Sbjct: 175 GFTEELEQVLAALP-RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQ 224
Score = 168 (64.2 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 55/197 (27%), Positives = 86/197 (43%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
R KQ + +AT P + +L Q P L +H +E IE V T
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQ--P---------LEYHLQSEQESTIEQRVITVNR 237
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
A+ L + S+ ++F + + + + L GI +H D + R + L
Sbjct: 238 EQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLD 297
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ + V + TD AARGIDI + VI D S D++HR+GR+ RAG+ GL +L
Sbjct: 298 GFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357
Query: 528 TESNRDLVDTIRRAAKL 544
+ I + K+
Sbjct: 358 SHEEYHHFGVIEKKNKI 374
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 190 (71.9 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V +SG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVTYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGSV 501
Score = 165 (63.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 455 HKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D+ ER K + F++KG + V TD AARG+DIP++ VI D A HR+GR
Sbjct: 529 HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 588
Query: 514 TARAGQYGLVTSLYTESNRDLV-DTIRRAAKLGQPV 548
T RAG+ G+ +L T + + D +R Q V
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 624
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 190 (71.9 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 71/261 (27%), Positives = 123/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V +SG+D++ A+TGSGKT +++ P++ +
Sbjct: 261 GFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 318
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 319 --------DQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYN----LRSVAVYGGG 366
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 367 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVTYLVFDEADRMFDMGFEYQ 422
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 423 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS 482
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G + + L E T SGS+
Sbjct: 483 GPSKWNWLTRRLVEFTSSGSV 503
Score = 165 (63.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 455 HKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D+ ER K + F++KG + V TD AARG+DIP++ VI D A HR+GR
Sbjct: 531 HGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGR 590
Query: 514 TARAGQYGLVTSLYTESNRDLV-DTIRRAAKLGQPV 548
T RAG+ G+ +L T + + D +R Q V
Sbjct: 591 TGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHV 626
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 186 (70.5 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 59/191 (30%), Positives = 92/191 (48%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q + +AT K A +LK P IS + + + ++K+ VT + + + L
Sbjct: 198 QTLMFSATFSDRVKSLANQLLKS--PKT--ISVSKENTTSGKIKQAVYWVTEERKRELLS 253
Query: 412 EAVKERLEFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
E + G + +VFA T ++ + K LK GI+ H D + R K L F
Sbjct: 254 ELI------GVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF 307
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
E K V V TD AARG+DIP+++ V+ D++HRVGRT RAG+ G SL +
Sbjct: 308 SEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSP 367
Query: 530 SNRDLVDTIRR 540
+ ++ I +
Sbjct: 368 KDERFLENIEQ 378
Score = 159 (61.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 52/192 (27%), Positives = 94/192 (48%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
S+GLS L++A++ G+ + +Q ++ + G D++ +A+TG+GKT ++ +P+++ +
Sbjct: 5 SIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIA 64
Query: 148 TA--------LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
A ENS +K + +L+L P L QV N P+
Sbjct: 65 KANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVAD--NIKQFSQYLPIKS 122
Query: 200 AVAVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG+ K DV+V+TP LL ++ R ++ + VK++V DEAD +L
Sbjct: 123 GVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHL---ALRNVDLSQ-VKFLVLDEADRML 178
Query: 255 CGSFQNQVIRLI 266
F + +L+
Sbjct: 179 DMGFLTDIEKLL 190
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 196 (74.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 48/148 (32%), Positives = 76/148 (51%)
Query: 399 IEVTVDTQVDALIEAV-----KERLEFGAETS------RTMVFANTVDAVYAVTKILKTA 447
+E++ + ++E V ++RL ET+ +T++FA+T +TK L+
Sbjct: 324 LELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLRED 383
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ + + V TD AARGID+ +++VI D + D
Sbjct: 384 GWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIED 443
Query: 507 FLHRVGRTARAGQYGLVTSLYTESNRDL 534
++HR+GRT RAG G S +TE N+ L
Sbjct: 444 YVHRIGRTGRAGATGTAISFFTEQNKGL 471
Score = 151 (58.2 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 54/199 (27%), Positives = 93/199 (46%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G D ++ ++ GF +P+ +Q LSG+D+V A TGSGKT SY +P I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P E V++ S +R V
Sbjct: 174 HI----------NAQPLLAPGDGPIVLVLAPTR---ELAVQIQTECSKFGHSSRIRNTCV 220
Query: 204 CGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + + +++++TP L++ ++ + ++ V Y+V DEAD +L
Sbjct: 221 YGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTN----LKRVTYLVLDEADRMLDMG 276
Query: 258 FQNQVIRLINMFRFDEKQL 276
F+ Q+ ++++ R D + L
Sbjct: 277 FEPQIRKIVDQIRPDRQTL 295
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 54/189 (28%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 391 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
+ T SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 451 WITTLPKIDRIEESDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRTVAV 501
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG+ + +++++TP L ID R + R YVV DEAD ++
Sbjct: 502 IGGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMG 557
Query: 258 FQNQVIRLI 266
F+ V +++
Sbjct: 558 FEPDVQKIL 566
Score = 168 (64.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 60/223 (26%), Positives = 107/223 (47%)
Query: 331 KSGSIKKKDWRRVRKNYQRSK----QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY 386
K + + +D ++ N++ K Q + AT+P ++ A + L++ P +I G+
Sbjct: 575 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR--PAVVYI-GSA 631
Query: 387 LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT 446
H R+++K ++ + L+ A+ LE G + ++F N + K L+
Sbjct: 632 GKPHE-RVEQKVFLMSESEKRKKLL-AI---LEQGFDPP-IIIFVNQKKGCDVLAKSLEK 685
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
G H E+R L N + + V TD A RGIDI +VS V+ D A +
Sbjct: 686 MGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 745
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D++HR+GRT RAG+ G+ + T+ + + +++A L PV
Sbjct: 746 DYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI-LESPV 787
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 54/189 (28%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
+ T SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 452 WITTLPKIDRIEESDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRTVAV 502
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG+ + +++++TP L ID R + R YVV DEAD ++
Sbjct: 503 IGGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMG 558
Query: 258 FQNQVIRLI 266
F+ V +++
Sbjct: 559 FEPDVQKIL 567
Score = 168 (64.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 60/223 (26%), Positives = 107/223 (47%)
Query: 331 KSGSIKKKDWRRVRKNYQRSK----QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY 386
K + + +D ++ N++ K Q + AT+P ++ A + L++ P +I G+
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR--PAVVYI-GSA 632
Query: 387 LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT 446
H R+++K ++ + L+ A+ LE G + ++F N + K L+
Sbjct: 633 GKPHE-RVEQKVFLMSESEKRKKLL-AI---LEQGFDPP-IIIFVNQKKGCDVLAKSLEK 686
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
G H E+R L N + + V TD A RGIDI +VS V+ D A +
Sbjct: 687 MGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 746
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D++HR+GRT RAG+ G+ + T+ + + +++A L PV
Sbjct: 747 DYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI-LESPV 788
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 54/189 (28%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
+ T SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 452 WITTLPKIDRIEESDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRTVAV 502
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG+ + +++++TP L ID R + R YVV DEAD ++
Sbjct: 503 IGGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMG 558
Query: 258 FQNQVIRLI 266
F+ V +++
Sbjct: 559 FEPDVQKIL 567
Score = 168 (64.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 60/223 (26%), Positives = 107/223 (47%)
Query: 331 KSGSIKKKDWRRVRKNYQRSK----QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY 386
K + + +D ++ N++ K Q + AT+P ++ A + L++ P +I G+
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR--PAVVYI-GSA 632
Query: 387 LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT 446
H R+++K ++ + L+ A+ LE G + ++F N + K L+
Sbjct: 633 GKPHE-RVEQKVFLMSESEKRKKLL-AI---LEQGFDPP-IIIFVNQKKGCDVLAKSLEK 686
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
G H E+R L N + + V TD A RGIDI +VS V+ D A +
Sbjct: 687 MGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 746
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D++HR+GRT RAG+ G+ + T+ + + +++A L PV
Sbjct: 747 DYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI-LESPV 788
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 185 (70.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 54/189 (28%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
+ T SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 452 WITTLPKIDRIEESDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRTVAV 502
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG+ + +++++TP L ID R + R YVV DEAD ++
Sbjct: 503 IGGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMG 558
Query: 258 FQNQVIRLI 266
F+ V +++
Sbjct: 559 FEPDVQKIL 567
Score = 168 (64.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 60/223 (26%), Positives = 107/223 (47%)
Query: 331 KSGSIKKKDWRRVRKNYQRSK----QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY 386
K + + +D ++ N++ K Q + AT+P ++ A + L++ P +I G+
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR--PAVVYI-GSA 632
Query: 387 LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT 446
H R+++K ++ + L+ A+ LE G + ++F N + K L+
Sbjct: 633 GKPHE-RVEQKVFLMSESEKRKKLL-AI---LEQGFDPP-IIIFVNQKKGCDVLAKSLEK 686
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
G H E+R L N + + V TD A RGIDI +VS V+ D A +
Sbjct: 687 MGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 746
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D++HR+GRT RAG+ G+ + T+ + + +++A L PV
Sbjct: 747 DYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI-LESPV 788
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 189 (71.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 72/261 (27%), Positives = 124/261 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 259 GFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIM-- 316
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQ 207
KE P P ++++CP LC+Q+ A N +R+VAV GG
Sbjct: 317 --------DQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN----LRSVAVYGGG 364
Query: 208 G-WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K +++V TP L++++ K ++ V Y+VFDEAD + F+ Q
Sbjct: 365 SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN----LQRVSYLVFDEADRMFDMGFEYQ 420
Query: 262 VIRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDE 314
V + + R D + L S +EK + +D + Q D+ + E+ Q I
Sbjct: 421 VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS 480
Query: 315 GNFEGDSDVEGLTEETKSGSI 335
G+ + + L E T SGS+
Sbjct: 481 GS-KWNWLTRRLVEFTSSGSV 500
Score = 165 (63.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 44/133 (33%), Positives = 64/133 (48%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S ++F + LK G H D+ ER K + +F++K V
Sbjct: 492 VEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 550
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ VI D A HR+GRT RAG+ G+ +L T + +
Sbjct: 551 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAG 610
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 611 DLVRNLEGANQHV 623
Score = 47 (21.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN----LQDEYISDE 314
++Q R +M R +EK R N G+ +E ++ E +Q+E +E
Sbjct: 124 EDQAAR--DMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEE---EE 178
Query: 315 GNFEGDSD 322
N E DSD
Sbjct: 179 DNLEYDSD 186
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 203 (76.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 47/122 (38%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +R + L F+ K + V T A
Sbjct: 420 SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 479
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 480 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 539
Query: 540 RA 541
A
Sbjct: 540 EA 541
Score = 145 (56.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 159 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 217
Query: 144 EKL-CTALGDS-----ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
++ GD+ EN + P SLVL P L Q+ A + +
Sbjct: 218 SQIYADGPGDALRAMKENGRYGRRKQYPI--SLVLAPTRELAVQIYEEARKFAYRSR--- 272
Query: 198 VRAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
VR V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 273 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEAD 328
Query: 252 MLLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 329 RMLDMGFEPQIRRIV 343
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 180 (68.4 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ +K+ +V D D ++A++ L G + T +F NT V L G
Sbjct: 223 ISQKFFKVGND---DDRLDALRLLL-LGNQVESTAIFCNTKKETQQVADALHFDGFSVLA 278
Query: 454 YHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DL +R +TL+ F K + V TD AARG+DI ++ VI A + +HR+G
Sbjct: 279 LHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIG 338
Query: 513 RTARAGQYGLVTSLYTE 529
RT RAG G+ SL+++
Sbjct: 339 RTGRAGSTGIAYSLFSD 355
Score = 165 (63.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 64/247 (25%), Positives = 118/247 (47%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++ + SL L L++ L + G+ + + +QA ++ +L GKDV+ A+TGSGKT ++ + L
Sbjct: 9 SLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLAL 68
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ KL E R S+V+CP L +QV + L+ G ++ +
Sbjct: 69 LNKL--------------EVKKFRIQSMVICPTRELADQVAKELRKLA--RGIHNIKILT 112
Query: 203 VCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+CGG G IG + VIV TP L ++ K +++ + +V DEAD +L
Sbjct: 113 LCGGTPFGPQIGSLEHGAHVIVGTPGRLEEHVI-KGTLQLD---NLNLLVLDEADRMLEM 168
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316
FQ + ++ D + L + + ++ + S +T P + + +D+ +
Sbjct: 169 GFQAALDNIVGRTPLDRQTLL-FSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKF 227
Query: 317 FE-GDSD 322
F+ G+ D
Sbjct: 228 FKVGNDD 234
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 180 (68.4 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ +K+ +V D D ++A++ L G + T +F NT V L G
Sbjct: 223 ISQKFFKVGND---DDRLDALRLLL-LGNQVESTAIFCNTKKETQQVADALHFDGFSVLA 278
Query: 454 YHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DL +R +TL+ F K + V TD AARG+DI ++ VI A + +HR+G
Sbjct: 279 LHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIG 338
Query: 513 RTARAGQYGLVTSLYTE 529
RT RAG G+ SL+++
Sbjct: 339 RTGRAGSTGIAYSLFSD 355
Score = 165 (63.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 64/247 (25%), Positives = 118/247 (47%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++ + SL L L++ L + G+ + + +QA ++ +L GKDV+ A+TGSGKT ++ + L
Sbjct: 9 SLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLAL 68
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ KL E R S+V+CP L +QV + L+ G ++ +
Sbjct: 69 LNKL--------------EVKKFRIQSMVICPTRELADQVAKELRKLA--RGIHNIKILT 112
Query: 203 VCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+CGG G IG + VIV TP L ++ K +++ + +V DEAD +L
Sbjct: 113 LCGGTPFGPQIGSLEHGAHVIVGTPGRLEEHVI-KGTLQLD---NLNLLVLDEADRMLEM 168
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316
FQ + ++ D + L + + ++ + S +T P + + +D+ +
Sbjct: 169 GFQAALDNIVGRTPLDRQTLL-FSATFPDQIKSISESIMTDPVMVKIASSEDQSTISQKF 227
Query: 317 FE-GDSD 322
F+ G+ D
Sbjct: 228 FKVGNDD 234
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 191 (72.3 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 67/260 (25%), Positives = 122/260 (46%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++L+ + S + +P+ +Q V LSG+D + A+TGSGKT +++ P++ +
Sbjct: 263 GFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIM-- 320
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
KE P P ++++CP LC+Q+ G +R+VAV GG
Sbjct: 321 --------DQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYG---LRSVAVYGGGS 369
Query: 209 -WPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
W K +++V TP L++++ +++ ++ V ++VFDEAD + F+ QV
Sbjct: 370 MWEQAKALQEGAEIVVCTPGRLIDHV----KKKATSLQRVTFLVFDEADRMFDMGFEYQV 425
Query: 263 IRLINMFRFDEKQL--SRMNESGVEK---PLEMDNSSLTQPDLQD--EENLQDEYISDEG 315
+ + R D + L S +EK + +D + Q D+ + E+ Q + G
Sbjct: 426 RSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSG 485
Query: 316 NFEGDSDVEGLTEETKSGSI 335
+ L E T +GS+
Sbjct: 486 QDKWGWLTRRLVEFTSAGSV 505
Score = 162 (62.1 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
+EF + S + + T +++ G H D+ ER K + +F++K V
Sbjct: 497 VEFTSAGSVLVFVTKKANCEELATNLIQE-GYSLGLLHGDMDQSERNKVIADFKKKNLPV 555
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV- 535
V TD AARG+DIP++ V+ D A HR+GRT RAG+ G+ +L T +
Sbjct: 556 LVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAG 615
Query: 536 DTIRRAAKLGQPV 548
D +R Q V
Sbjct: 616 DLVRNLEGANQSV 628
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 202 (76.2 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 57/196 (29%), Positives = 101/196 (51%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + S D + A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HIL-----DQPSMEDGDG----AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDEK 274
+ QV+R+I+ R D +
Sbjct: 678 EPQVMRIIDNVRPDRQ 693
Score = 153 (58.9 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 52/200 (26%), Positives = 89/200 (44%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKEV---EQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
Score = 50 (22.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
F+FDE++ + ES K L+ ++L D DEE+++ +
Sbjct: 916 FKFDEQEFNAAKES---KKLQ--KAALGLADSDDEEDIEQD 951
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 183 (69.5 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 65/222 (29%), Positives = 108/222 (48%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT +L+P+ E+
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T T RA L+L P L Q ++ L G ++ + G
Sbjct: 158 LKT----------HSAQTGARA--LILSPTRELALQTMKFTKELGKFTG---LKTALILG 202
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + + +++ V+YVVFDEAD L F
Sbjct: 203 GDKMEDQFAALHENPDIIIATPGRLVH-VAVEMNLKLQ---SVEYVVFDEADRLFEMGFA 258
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ +I R + + + + K L E + LT+P L
Sbjct: 259 EQLQEIIG--RLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 298
Score = 169 (64.5 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 51/162 (31%), Positives = 74/162 (45%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +LK + V D + L+ ++ + +T+VF T ++++L T G+
Sbjct: 308 NEQLKTSFFLVREDAKAAVLLHLLRNVVR---PQDQTVVFVATKHHAEYLSELLATQGVS 364
Query: 451 CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C + L R L F K + TD AARG+DIP + +VI F FLH
Sbjct: 365 CAHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLH 424
Query: 510 RVGRTARAGQYGLVTSLYTESNRD-LVDT---IRRAAKLGQP 547
RVGR ARAG+ G SL L+D + RA L +P
Sbjct: 425 RVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRALTLARP 466
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 176 (67.0 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 62/189 (32%), Positives = 99/189 (52%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ +LGLS L +A+ G+ PS +QA ++ VL+GKDV+ AA+TG+GKT + +PL+
Sbjct: 1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E L A G S + +LVL P L QV PL R+ V
Sbjct: 61 ELL--AKGHKAKSGQTR--------ALVLTPTRELAAQVGESVETYG--KYLPL-RSAVV 107
Query: 204 CGGQGW-P-IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG P I K DV+V+TP LL+ + ++ ++F + ++ +V DEAD +L
Sbjct: 108 FGGVPINPQINKLRHGVDVLVATPGRLLDLV---QQNAVKFNQ-LEILVLDEADRMLDMG 163
Query: 258 FQNQVIRLI 266
F + +++
Sbjct: 164 FIRDIKKIL 172
Score = 170 (64.9 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 48/147 (32%), Positives = 69/147 (46%)
Query: 396 EKWIEVTVDTQVDAL-IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
++WI TQ AL I+ +K+ + +VF+ T + K L A I
Sbjct: 219 KQWICPVDKTQKSALLIQLIKQE-----NWQQVLVFSRTKHGANRLAKSLIQAEISAAAI 273
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H + S R K L +F+ + V V TD AARG+DI + V+ D D++HR+GR
Sbjct: 274 HGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGR 333
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRR 540
T RAG G SL + L+ I R
Sbjct: 334 TGRAGATGQAVSLVSSEEIKLLKDIER 360
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 182 (69.1 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 70/226 (30%), Positives = 108/226 (47%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL LI+ + G+ P+ +Q ++ +L G+DVV A+TGSGKT +L+PL EK
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVC 204
L +EPT A +L+L P L Q + L G + ++++ V
Sbjct: 101 L-----------QRREPTKG-ARALILSPTRELAVQTYKFIKEL----GRFMELKSILVL 144
Query: 205 GGQGWP-----IGK-PDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG I PDVIV+TP L+ +D K + ++YVVFDEAD L
Sbjct: 145 GGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLK-------LNSIEYVVFDEADRLFE 197
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
F Q+ ++ R + + M + + K L E + L P L
Sbjct: 198 MGFGEQLNETLH--RLPSSRQTVMFSATLPKLLVEFARAGLNDPVL 241
Score = 169 (64.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 49/142 (34%), Positives = 70/142 (49%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
K++ D + AL+ +K + S+T+VFA T V ++ IL AGI +
Sbjct: 257 KFLYCRPDDRYTALVVLLKYVIPV---QSQTVVFAGTQHHVELISYILTEAGISNASVYS 313
Query: 457 DLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
L R F +K V + TD AARGIDIP++ V+ F F+HRVGR A
Sbjct: 314 SLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCA 373
Query: 516 RAGQYGLVTSLY-TESNRDLVD 536
RAG+ G S+ T+ L+D
Sbjct: 374 RAGRTGTAYSIVSTDDTAHLLD 395
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 192 (72.6 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 51/186 (27%), Positives = 86/186 (46%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P + + A + D ++S + + + +K + V + AL
Sbjct: 335 RQTLMFSATFPADIQHLA----RDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSAL 390
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ + + T++F T +T L H D + ER + L F
Sbjct: 391 LDLLSASTD-----GLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAF 445
Query: 471 QEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ + V T AARG+DIPNV+HVI D + D++HR+GRT RAG GL T+ +
Sbjct: 446 RSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query: 530 SNRDLV 535
N ++V
Sbjct: 506 ENSNIV 511
Score = 154 (59.3 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 53/185 (28%), Positives = 88/185 (47%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI-EKLCTA 149
L L+ ++ + F +P+ VQ SV V +G+D++ A+TGSGKT +L P++ E T
Sbjct: 149 LDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTG 208
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
S ++++ P L Q+ A + + V+A V GG
Sbjct: 209 PSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSW---VKACVVYGGS-- 263
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
PIG D++V+TP L N++ R ++ VKY+V DEAD +L F+ Q
Sbjct: 264 PIGNQLREIERGCDLLVATPGRL-NDL--LERGKISLAN-VKYLVLDEADRMLDMGFEPQ 319
Query: 262 VIRLI 266
+ ++
Sbjct: 320 IRHIV 324
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 182 (69.1 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 53/194 (27%), Positives = 96/194 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+W GLS + I + + G+ +P+ +QA ++ + SG+DV+ A+TGSGKT ++L+P+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 145 KLCTALGDSENSNSDKEPTPP-RAPSLVLCPNVVL-CEQVVRMAN--ALSADNGEPLVRA 200
+ D + + P P+ L + C+ +++ N A A G P+
Sbjct: 479 HI----KDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQ 534
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
+A +G +++V TP +++ + R R Y+V DEAD + F+
Sbjct: 535 IADLK-RG-----AEIVVCTPGRMIDVLSANAGRVTNLHR-CTYLVLDEADRMFDLGFEP 587
Query: 261 QVIRLINMFRFDEK 274
QV+R+IN R D +
Sbjct: 588 QVMRIINNIRPDRQ 601
Score = 171 (65.3 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 61/213 (28%), Positives = 100/213 (46%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A VLK+ P + G + E+ +EV
Sbjct: 591 RIINNIRPDRQTVLFSATFPRAMEALARKVLKK--PVEITVGGRSVVASEV---EQIVEV 645
Query: 402 TVD-TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ ++ L+E + E + RT+VF + ++ A+ L G H
Sbjct: 646 RPEESKFSRLLELLGELYNNQLDV-RTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQ 704
Query: 461 EERAKTLVNFQEKGGVF---VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+R T+ ++ K GVF + T ARG+D+ ++ V+ D D++HRVGRT RA
Sbjct: 705 HDRDSTISDY--KAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRA 762
Query: 518 GQYGL-VTSLYTESNRDLVDTIRRAAKLG-QPV 548
G G+ VT + E + VD I +A K+ QPV
Sbjct: 763 GHTGVAVTFITPEQEKYAVD-IAKALKMSKQPV 794
Score = 39 (18.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 326 LTEETKSGSIKKKDWRRVRKNYQR 349
++ T+S S ++ + R R++Y++
Sbjct: 1 MSRRTRSRSPPRRSYNRERRDYRK 24
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 203 (76.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 53/152 (34%), Positives = 77/152 (50%)
Query: 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
K W+E + D + L++ + E G + S T+VF T ++ L G C
Sbjct: 460 KVVWVEES-DKR-SFLLDLLNAT-ESGKD-SLTLVFVETKKGADSLEDFLYHEGYACTSI 515
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D S +R + L F+ K + V T AARG+DI NV HVI D + +++HR+GR
Sbjct: 516 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 575
Query: 514 TARAGQYGLVTSLYTESN----RDLVDTIRRA 541
T R G GL TS + E N +DL+D + A
Sbjct: 576 TGRVGNLGLATSFFNERNINITKDLLDLLVEA 607
Score = 144 (55.7 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 223 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 281
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ + G E + KE + P SLVL P L Q+ A S + V
Sbjct: 282 SQIYSD-GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 337
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 338 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 393
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 394 MLDMGFEPQIRRIV 407
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 197 (74.4 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 42/98 (42%), Positives = 60/98 (61%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+TMVFAN ++ + +T L + Y H L ++R ++L F+ GV VCTD AA
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
RGIDIP+V+HVI +A ++HR GRTARA + G+
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGV 488
Score = 149 (57.5 bits), Expect = 4.6e-23, Sum P(2) = 4.6e-23
Identities = 52/193 (26%), Positives = 92/193 (47%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D W LS ++ +L +GF +P +Q+ + G D++ A+TGSGKT ++ +P
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++E C N D + +LV+ P L Q+ + + P +R +
Sbjct: 180 ILEH-CLR-------NVDAK----YVQALVVAPTRELAHQICQHFELIKPS---PNIRVM 224
Query: 202 AVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
++ GG Q + K P V+V+TP L + I+ + F + +K +V DEAD LL
Sbjct: 225 SITGGLAVQKQQRLLNKHPHVVVATPGRLWSVIN-ENNLTGNFKK-IKCLVLDEADRLLQ 282
Query: 256 GSFQNQVIRLINM 268
S ++ +L+ +
Sbjct: 283 KSHFEELSKLLEI 295
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 183 (69.5 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 56/190 (29%), Positives = 104/190 (54%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ +L LS ++ A+ + G+ +P+ +Q ++ VL+GKD++ AA+TG+GKT S+++PL+
Sbjct: 1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
E+L +S+ + K+ R +L+L P L QV A + + L + ++A
Sbjct: 61 EQL-----NSQYKETGKKLRAKRIRALILVPTRELAVQV----EASISQYAKYLDISSMA 111
Query: 203 VCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG K D++V+TP LL D +R + F + +V DEAD +L
Sbjct: 112 MYGGVDAQEQKQRLIWGVDILVATPGRLL---DMTHQRVLHFDE-LDMLVLDEADRMLDM 167
Query: 257 SFQNQVIRLI 266
F + + ++I
Sbjct: 168 GFIDDINKII 177
Score = 156 (60.0 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 47/145 (32%), Positives = 70/145 (48%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P++ E+W+ VTVD A A+ + + ++F T + L+ GI
Sbjct: 221 PKI-EQWL-VTVDK---ANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGIVA 275
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H + + R K L +F+ K V T AARG+DI +S VI D D++HR
Sbjct: 276 ESIHSGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHR 335
Query: 511 VGRTARAGQYGLVTSLYTESN-RDL 534
+GRT RAG G SL ++ N R+L
Sbjct: 336 IGRTGRAGASGEAISLVSKDNFREL 360
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 191 (72.3 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 58/224 (25%), Positives = 107/224 (47%)
Query: 53 WKGRPFRGFXXXX--XXXSDKNGSSDTFFADDNV-TWKSLGLSDRLIRALENSGFGRPSI 109
W +P + D N S+ A + + TW+ L ++ A+ G+ +PS
Sbjct: 379 WSKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSP 438
Query: 110 VQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169
+Q S+ L+G+D++ AETGSGKT ++++P++ + D E P A
Sbjct: 439 IQMQSIPISLTGRDILGIAETGSGKTCAFVIPML----IYISKQPRLTKDTEADGPYA-- 492
Query: 170 LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG-----WPIGKP-DVIVSTPAA 223
LV+ P L +Q+ + + G R V++ GGQ + + K ++I++TP
Sbjct: 493 LVMAPTRELVQQIEKETRNFAQHFG---FRVVSLVGGQSIEDQAYQVSKGCEIIIATPGR 549
Query: 224 LLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLIN 267
L + ++ +R + Y+V DEADM++ F+ QV +++
Sbjct: 550 LNDCLE----KRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLD 589
Score = 158 (60.7 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 34/114 (29%), Positives = 59/114 (51%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F N + +L+ + H S E+R L F++ K V + T A+RG
Sbjct: 685 IIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRG 744
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
I + V+HVI D + D+ HR+GRT RAG GL +S T+ + +++ +++
Sbjct: 745 IHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQ 798
Score = 50 (22.7 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 22/95 (23%), Positives = 39/95 (41%)
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
N R + +R ++++ + S + +NS + D +D + D D G +
Sbjct: 147 NDRYRDTDRYRDNDRRDGSGSGSSRRRDERRENSG--RRDYRDNDRRDDR--RDNGRYGR 202
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354
D+D G K+ S KK++ V N K I
Sbjct: 203 DNDNSGGGGSGKNSSDKKEEINPVSNNNDIHKDRI 237
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 177 (67.4 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/190 (29%), Positives = 102/190 (53%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPL 142
+T++ GL D L + + SG+ +P+ VQ + P++S G+D++ A+TGSGKT ++L+P+
Sbjct: 277 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGI-PIISAGRDLMACAQTGSGKTAAFLLPI 335
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+++ T D ++ E P A +++ P L Q+ A + VR V
Sbjct: 336 LQRFMT---DGVAASKFSEIQEPEA--IIVAPTRELINQIYLEARKFAYGT---CVRPVV 387
Query: 203 VCGG--QGWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG G+ I + +V+ +TP L + I R ++ + V+Y+V DEAD +L
Sbjct: 388 VYGGINTGYTIREVLKGCNVLCATPGRLHDLIG---RGKIGLSK-VRYLVLDEADRMLDM 443
Query: 257 SFQNQVIRLI 266
F+ ++ +L+
Sbjct: 444 GFEPEMRKLV 453
Score = 171 (65.3 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 57/203 (28%), Positives = 94/203 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407
+ +Q + +AT P + ++ A LK D +++ + +++ ++V ++
Sbjct: 461 KEERQTLMFSATYPEDIQRMAADFLKV---DYIFLAVGVVGGACSDVEQTVVQVDQYSKR 517
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L+E ++ G E RTMVF T + + L I H D ER K L
Sbjct: 518 DQLLELLRAT---GNE--RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKAL 572
Query: 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+F+ V V T AARG+DI V HV+ D +S +++HR+GRT R G G S
Sbjct: 573 SDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSF 632
Query: 527 YT-ESNRDLVDTIRRAAKLGQPV 548
+ ES+ L ++ + Q V
Sbjct: 633 FNPESDTPLARSLVKVLSGAQQV 655
Score = 38 (18.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 26/114 (22%), Positives = 43/114 (37%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV-DAVYA--VTKILKTAGIECYCYH 455
+ + + +D + + G T R + F N D A + K+L A +
Sbjct: 602 VNFDMPSSIDEYVHRIGRTGRCG-NTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWL 660
Query: 456 KDLSLEERAKTLVNFQEKGGVFVCTDAAARGI---DIPNVSHVIQADFATSAVD 506
++++ T F +G VF TD+ G D P S A A +A D
Sbjct: 661 EEVAFSAHGTT--GFNPRGKVFASTDSRKGGSFKSDEPPPSQT-SAPSAAAAAD 711
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 181 (68.8 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 56/207 (27%), Positives = 91/207 (43%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + N Q + +AT+P K+ A + P+ + + N +++
Sbjct: 164 EDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTN--PEHVKVKAKEMTVSN--IQQF 219
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++EV + D L RL +VF T V +T+ L G H D
Sbjct: 220 YLEVHERKKFDTLT-----RLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGD 274
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ +R L F++ V V TD AARG+DI V+HV D ++HR+GRT R
Sbjct: 275 LTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGR 334
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG+ G+ + T +D++ I + K
Sbjct: 335 AGKTGMAMTFITPREKDMLRAIEQTTK 361
Score = 161 (61.7 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 55/188 (29%), Positives = 92/188 (48%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ LS L +A++ GF + +QA ++ L+ KDV+ A+TG+GKT ++ +PL+
Sbjct: 3 ITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV 62
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE---PLVRA 200
EK+ P P ++V+ P L QV + D P+
Sbjct: 63 EKI--------------NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGG 108
Query: 201 VAVCGGQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+ G Q + K P +IV TP LL++I+ RR M ++ V VV DEAD +L F
Sbjct: 109 QDI-GRQIRALKKNPHIIVGTPGRLLDHIN---RRTMR-LQTVNTVVLDEADEMLNMGFI 163
Query: 260 NQVIRLIN 267
+ +++
Sbjct: 164 EDIESILS 171
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 200 (75.5 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 145 (56.1 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 55/194 (28%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ A G E + KE + P SLVL P L Q+ A S + V
Sbjct: 240 SQIY-ADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 295
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 296 RPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 351
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 352 MLDMGFEPQIRRIV 365
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 200 (75.5 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 145 (56.1 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 55/194 (28%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ A G E + KE + P SLVL P L Q+ A S + V
Sbjct: 240 SQIY-ADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 295
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 296 RPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 351
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 352 MLDMGFEPQIRRIV 365
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 203 (76.5 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 47/122 (38%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +R + L F+ K + V T A
Sbjct: 419 SLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 478
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 479 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 538
Query: 540 RA 541
A
Sbjct: 539 EA 540
Score = 141 (54.7 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 51/194 (26%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 157 SFSDVDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 215
Query: 144 EKL-CTALGDS---ENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ GD+ + + + + P SLVL P L Q+ A + + V
Sbjct: 216 SQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSR---V 272
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 273 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 328
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 329 MLDMGFEPQIRRIV 342
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 182 (69.1 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 54/217 (24%), Positives = 109/217 (50%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L LI+A +N + +P+ +Q+ ++ P L G D++ A+TGSGKT ++ +P++
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP---LVRAV 201
+L D+EP + +L P L +Q+ ++L + G +V +
Sbjct: 142 RLW----------HDQEPYY----ACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGM 187
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
+ + KP +I++TP L+++++ + + R +K++V DEAD LL F
Sbjct: 188 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSL---RKLKFLVMDEADRLLDMEFGPV 244
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ R++ + E+ + + K ++ +SLT P
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNP 281
Score = 160 (61.4 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 38/112 (33%), Positives = 60/112 (53%)
Query: 426 RTMV-FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
+TM+ F T ++ + H DL+ +R +L F+ K + V TD A
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 381
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
ARG+DIP+V V+ D + ++HRVGRTARAG+ G SL ++ + +L+
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 433
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 314 EGNFEGDSDVEGLTEETKSGSIKKK 338
EG E DS+ + E+ K K K
Sbjct: 40 EGGSESDSEEDATAEKKKVLKSKSK 64
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 178 (67.7 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 40/132 (30%), Positives = 66/132 (50%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+A + ++ +F + S ++F N + ++L+ H ++ ER +L
Sbjct: 239 EAYLNSILHLEQF--KDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSL 296
Query: 468 VNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ + + TD A+RG+DIP V VI D DF+HRVGRTARAG+ G S+
Sbjct: 297 HRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSI 356
Query: 527 YTESNRDLVDTI 538
E + D + +I
Sbjct: 357 IGEKDIDRIQSI 368
Score = 162 (62.1 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 53/198 (26%), Positives = 95/198 (47%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LG++ L +L+ P+ +Q+A + +L G D + A+TGSGKT ++ P++
Sbjct: 1 MSFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ SE+ P L+L P L Q+ AL A+ ++ V
Sbjct: 61 TQW------SED--------PFGIFGLILTPTRELALQIAEQFAALGANMN---IKVAVV 103
Query: 204 CGGQGW---PIG---KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG+ + + KP +++TP L ++I + +R VKY+V DEAD LL S
Sbjct: 104 VGGEDFVQQTLALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNS 163
Query: 258 FQNQVIRLINMFRFDEKQ 275
F + + R ++ +K+
Sbjct: 164 FGSDLQRCFDVLPTSDKR 181
Score = 41 (19.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 118 VLSGKDVVIAAETGSGKTHSY-LVPLIEK----LCTA-LGDSENSNSDKEPTPPRAP 168
VL D +++ GS + ++P +K L TA + D+ + +K PTP + P
Sbjct: 152 VLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLLFTATITDAVRALKEKPPTPGKPP 208
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 175 (66.7 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 55/206 (26%), Positives = 89/206 (43%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + N Q + +AT+P K+ A + + P+ + + N +++ +
Sbjct: 165 DIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTE--PEHVKVKAKEMTVSN--IQQFY 220
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+EV + D L RL +VF T V + + L G H DL
Sbjct: 221 LEVQERKKFDTLT-----RLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDL 275
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ +R L F+E V V TD AARG+DI V+HV D ++HR+GRT RA
Sbjct: 276 TQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRA 335
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G+ G+ + T + ++ I + K
Sbjct: 336 GKTGMAMTFITPREKSMLRAIEQTTK 361
Score = 167 (63.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ LS L++A+ GF + +QA ++ LS KDV+ A+TG+GKT ++ +PL+
Sbjct: 3 ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE---PLVRA 200
EK+ P P ++V+ P L QV + D P+
Sbjct: 63 EKI--------------NPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGG 108
Query: 201 VAVCGGQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+ G Q + K P++IV TP LL++I+ RR + + V VV DEAD +L F
Sbjct: 109 QDI-GRQIRALKKNPNIIVGTPGRLLDHIN---RRTIR-LNNVNTVVMDEADEMLNMGFI 163
Query: 260 NQVIRLIN 267
+ + +++
Sbjct: 164 DDIESILS 171
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 182 (69.1 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 39/120 (32%), Positives = 63/120 (52%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++F T +T L + H D + ER + L F+ + + V T A+R
Sbjct: 433 TLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASR 492
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRA 541
G+DIPNV+HVI D T D++HR+GRT RAG G + + +N+ +L++ ++ A
Sbjct: 493 GLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEA 552
Score = 163 (62.4 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 57/198 (28%), Positives = 101/198 (51%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI----EKL 146
L+ L++ ++ SG+ +P+ VQ S+ V SG+D++ A+TGSGKT +L P++ +K
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 147 CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
A+ +++ P +L+L P L Q+ + + VR AV GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSW---VRPCAVYGG 292
Query: 207 -----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
Q I + D++ +TP L++ ID R R+ +K++V DEAD +L F+
Sbjct: 293 ADIRAQIRQIDQGCDLLSATPGRLVDLID---RGRISLAN-IKFLVLDEADRMLDMGFEP 348
Query: 261 QVIRLI---NMFRFDEKQ 275
Q+ ++ +M +E+Q
Sbjct: 349 QIRHIVEGADMTSVEERQ 366
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 179 (68.1 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 64/222 (28%), Positives = 108/222 (48%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT +L+P+ E+
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T RA L+L P L Q ++ L G ++ + G
Sbjct: 157 L----------KARSAQTGARA--LILSPTRELALQTMKFTKELGKFTG---LKTALILG 201
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + + +++ V+YVVFDEAD L F
Sbjct: 202 GDKMEDQFAALHENPDIIIATPGRLVH-VAVEMNLKLQ---SVEYVVFDEADRLFEMGFA 257
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ +I R + + + + K L E + LT+P L
Sbjct: 258 EQLQEIIG--RLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 297
Score = 170 (64.9 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 46/137 (33%), Positives = 66/137 (48%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +LK ++ V DT+ L+ ++ + +T+VF T +T++L G+
Sbjct: 307 NEQLKTSFLLVREDTKAAVLLYLLQNVVR---PQDQTVVFVATKHHAEYLTELLMGQGVS 363
Query: 451 CYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C + L R L F K + TD AARG+DIP + +VI F FLH
Sbjct: 364 CAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLH 423
Query: 510 RVGRTARAGQYGLVTSL 526
RVGR ARAG+ G SL
Sbjct: 424 RVGRVARAGRSGTAYSL 440
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 176 (67.0 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 45/120 (37%), Positives = 63/120 (52%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
+VF TV + + G H LS +R +L F+ + + V TD AARG
Sbjct: 366 IVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARG 425
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V VI D T + ++HRVGRTARAG+ G SL T+ DL +R + LG+
Sbjct: 426 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQY--DLEMYLRIESVLGK 483
Score = 167 (63.8 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 56/218 (25%), Positives = 111/218 (50%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K L L L+ ++E+ F +P+ +Q+ ++ L GKD++ A+TGSGKT ++ +P+++
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG---EPLVRAV 201
L A ++P +LVL P L Q+ +AL + G +V +
Sbjct: 184 SLWHA----------QQPYF----ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGM 229
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
+ + KP VIV+TP ++++++ + + + +KY+V DEAD LL F
Sbjct: 230 DMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSL---KNLKYLVMDEADRLLDMDFGPA 286
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLE-MDNSSLTQP 298
+ +++ + K+ + + + + +E + +SL P
Sbjct: 287 LDKILKVIPI--KRTTYLFSATMTNKIEKLQRASLHNP 322
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 208 (78.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/146 (31%), Positives = 75/146 (51%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +K+ + V + + + L+ + E T++F T + + L +
Sbjct: 617 NEYIKQNLVFVEEENKCNYLLNLLAEN-----NNGLTILFVETKRKADIIERFLSNQKLN 671
Query: 451 CYCYHKDLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
C H D S +ER + L F+ +G + V TD AARG+DI N+ HVI D ++ D++
Sbjct: 672 AVCIHGDKSQDERERALKLFK-RGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYI 730
Query: 509 HRVGRTARAGQYGLVTSLYTESNRDL 534
HR+GRT RAG G+ TS E N+++
Sbjct: 731 HRIGRTGRAGNIGIATSFVNEDNKNI 756
Score = 140 (54.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 51/193 (26%), Positives = 92/193 (47%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
SL L++ L+ ++ + + + +Q S+ +++ D++ A+TGSGKT YL+P+I +
Sbjct: 366 SLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHML 425
Query: 148 T------ALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+ N S+ P L+L P L Q+ A + G ++
Sbjct: 426 INDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETG---IKP 482
Query: 201 VAVCGGQGWP-----IGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + GG + K D+IV+TP L N+I K + ++ F+ ++V DEAD +L
Sbjct: 483 VVLYGGNNIKTQLSNLDKGADIIVATPGRL-NDILEKGKIKL-FL--TTFLVLDEADRML 538
Query: 255 CGSFQNQVIRLIN 267
F Q+ ++N
Sbjct: 539 DMGFSPQIRSIVN 551
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 208 (78.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/146 (31%), Positives = 75/146 (51%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +K+ + V + + + L+ + E T++F T + + L +
Sbjct: 617 NEYIKQNLVFVEEENKCNYLLNLLAEN-----NNGLTILFVETKRKADIIERFLSNQKLN 671
Query: 451 CYCYHKDLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
C H D S +ER + L F+ +G + V TD AARG+DI N+ HVI D ++ D++
Sbjct: 672 AVCIHGDKSQDERERALKLFK-RGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYI 730
Query: 509 HRVGRTARAGQYGLVTSLYTESNRDL 534
HR+GRT RAG G+ TS E N+++
Sbjct: 731 HRIGRTGRAGNIGIATSFVNEDNKNI 756
Score = 140 (54.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 51/193 (26%), Positives = 92/193 (47%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
SL L++ L+ ++ + + + +Q S+ +++ D++ A+TGSGKT YL+P+I +
Sbjct: 366 SLNLNELLLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHML 425
Query: 148 T------ALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+ N S+ P L+L P L Q+ A + G ++
Sbjct: 426 INDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETG---IKP 482
Query: 201 VAVCGGQGWP-----IGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + GG + K D+IV+TP L N+I K + ++ F+ ++V DEAD +L
Sbjct: 483 VVLYGGNNIKTQLSNLDKGADIIVATPGRL-NDILEKGKIKL-FL--TTFLVLDEADRML 538
Query: 255 CGSFQNQVIRLIN 267
F Q+ ++N
Sbjct: 539 DMGFSPQIRSIVN 551
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 200 (75.5 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 441 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 500
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 560
Query: 540 RA 541
A
Sbjct: 561 EA 562
Score = 144 (55.7 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ + G E + KE + P SLVL P L Q+ A S + V
Sbjct: 239 SQIYSD-GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 294
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 295 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 350
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 351 MLDMGFEPQIRRIV 364
Score = 40 (19.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE+ + ++ D N G + + ETK G+ +D+
Sbjct: 411 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 459
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 200 (75.5 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 144 (55.7 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ + G E + KE + P SLVL P L Q+ A S + V
Sbjct: 240 SQIYSD-GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 295
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 351
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 352 MLDMGFEPQIRRIV 365
Score = 40 (19.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE+ + ++ D N G + + ETK G+ +D+
Sbjct: 412 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 460
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 200 (75.5 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 144 (55.7 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ + G E + KE + P SLVL P L Q+ A S + V
Sbjct: 240 SQIYSD-GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 295
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 351
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 352 MLDMGFEPQIRRIV 365
Score = 40 (19.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE+ + ++ D N G + + ETK G+ +D+
Sbjct: 412 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 460
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 200 (75.5 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 144 (55.7 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ + G E + KE + P SLVL P L Q+ A S + V
Sbjct: 240 SQIYSD-GPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 295
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 296 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 351
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 352 MLDMGFEPQIRRIV 365
Score = 40 (19.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE+ + ++ D N G + + ETK G+ +D+
Sbjct: 412 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 460
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 182 (69.1 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 47/145 (32%), Positives = 75/145 (51%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P L+ +++V + T +A + + E T +VF NT + + ++L++ G
Sbjct: 321 PTLRTTYVQVPL-THREAFLHVLLST-ESNI-TKSAIVFTNTTKSADLLERLLRSLGHRV 377
Query: 452 YCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H L ER L F+ V V TD A+RG+DIP+VS V+ + + D++HR
Sbjct: 378 TSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHR 437
Query: 511 VGRTARAGQYGLVTSLYTESNRDLV 535
VGRTARAG+ G +L + + LV
Sbjct: 438 VGRTARAGRTGEAVTLVGQRDVQLV 462
Score = 160 (61.4 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 50/178 (28%), Positives = 91/178 (51%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A++N ++K+L ++ L+ +L +P+ +Q A + +L G+D + + TGSGKT ++
Sbjct: 92 AEEN-SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFS 150
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG-EP-L 197
VP+++K ++P A ++L P L Q+ A+SA +P L
Sbjct: 151 VPILQKWA------------EDPFGIFA--VILTPTRELALQIFEQIKAISAPQSMKPVL 196
Query: 198 VRAVAVCGGQGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ Q + G+P V+V+TP L ++I+ + ++ V+ VV DEAD LL
Sbjct: 197 ITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLL 254
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 193 (73.0 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L++ ++ L + ++ +VFA+T +T L++ G H D ER L
Sbjct: 360 DRLVKHLESALN--EKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVL 417
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F++ K + V TD AARGID+ ++HVI D + D++HR+GRT R G G S
Sbjct: 418 DEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISF 477
Query: 527 YTESNRDL 534
+TE N L
Sbjct: 478 FTEGNSKL 485
Score = 149 (57.5 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
Identities = 52/199 (26%), Positives = 94/199 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G D +++ +++ GF +P+ +Q LSG+D++ A TGSGKT SY +P I
Sbjct: 128 TFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 187
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ + P LVL P L Q+ + + +R V
Sbjct: 188 HI----------NAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSR---IRNTCV 234
Query: 204 CGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I ++ ++TP L++ ++ + ++ V Y+V DEAD +L
Sbjct: 235 YGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTN----LKRVTYLVLDEADRMLDMG 290
Query: 258 FQNQVIRLINMFRFDEKQL 276
F+ Q+ ++++ R D + L
Sbjct: 291 FEPQIRKIVDQIRPDRQTL 309
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 184 (69.8 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 58/195 (29%), Positives = 91/195 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V +
Sbjct: 446 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQSILQVGQYS 500
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 501 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 555
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 556 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 615
Query: 525 SLY-TESNRDLVDTI 538
S + TES+ L +
Sbjct: 616 SFFDTESDNHLAQPL 630
Score = 161 (61.7 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 53/190 (27%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ VL+G+D++ A+TGSGKT ++L+P++
Sbjct: 262 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 321
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 322 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 373
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ VKY+V DEAD +L
Sbjct: 374 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQVKYLVLDEADRMLDMG 429
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 430 FGPEMKKLIS 439
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 197 (74.4 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 46/122 (37%), Positives = 62/122 (50%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 442 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 501
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 502 ARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLLDLLV 561
Query: 540 RA 541
A
Sbjct: 562 EA 563
Score = 146 (56.5 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 54/191 (28%), Positives = 102/191 (53%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 SFSDVAMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGE-P- 196
++ T G E + KE + P SLVL P L Q+ A S + P
Sbjct: 240 SQIYTD-GPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPC 298
Query: 197 LVRAVAVCGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+V A G Q + + ++V+TP L++ ++ + + ++F KY+V DEAD +L
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADRMLD 354
Query: 256 GSFQNQVIRLI 266
F+ Q+ R+I
Sbjct: 355 MGFEPQIRRII 365
Score = 37 (18.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE + ++ D N G + + ETK G+ +D+
Sbjct: 412 SENITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDF 460
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 199 (75.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 47/155 (30%), Positives = 82/155 (52%)
Query: 399 IEVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V ++ + D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 318 VDVCMENEKDNKLIQLMEEIM--AEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGD 375
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR
Sbjct: 376 KSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR 435
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T N RDLV + A + P
Sbjct: 436 STNKGTAYTFFTPGNLRQARDLVRVLEEARQAINP 470
Score = 144 (55.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 53/185 (28%), Positives = 91/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L F P+ +QA LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 110 LLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 163
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A D G+ +++ V GG +G I
Sbjct: 164 ERGDGPI---CLVLAPTRELAQQVQQVA----FDYGKSSRIKSTCVYGGAPKGPQIRDLE 216
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 217 RGVEICIATPGRLIDFLEVGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 272
Query: 272 DEKQL 276
D + L
Sbjct: 273 DRQTL 277
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQY 353
++ NF D G + + S + R R NY Y
Sbjct: 526 NNNNNFSRDGRSGGSNRDERMSSSYRDRSRDGRNNYNSGPSY 567
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 172 (65.6 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 48/138 (34%), Positives = 62/138 (44%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+E V L+ + TM+F T V L G H DL R K L F
Sbjct: 258 VELVSRVLQ-ARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAF 316
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ G V V TD AARGIDI +V+HVI ++HR+GRT RAG+ G+ +L
Sbjct: 317 RTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDW 376
Query: 530 SNRDLVDTIRRAAKLGQP 547
I +A LG P
Sbjct: 377 DELPRWSMIDQALGLGSP 394
Score = 169 (64.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 64/209 (30%), Positives = 104/209 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ D ++RAL G RP +Q ++ L G+DV+ A TG GKT ++ VPL++
Sbjct: 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR-MANA---LSA----DNGEP 196
++ + GD + PRA LV+ P LC QV +A A L+A D+
Sbjct: 71 RITS--GDGTRPLTGA----PRA--LVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAA 122
Query: 197 LVR---AVAVCGGQGW-PI-----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ R V++ GG+ + P DV+V TP LL D ++ ++ + G+ +V
Sbjct: 123 VRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLL---DLCQQGHLQ-LGGLSVLVL 178
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + R++ D + +
Sbjct: 179 DEADEMLDLGFLPDIERILRQIPADRQSM 207
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 216 (81.1 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 62/192 (32%), Positives = 105/192 (54%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D+V + +GL DRL++AL + G+ +P+++Q ++ L GKD++ A TGSGKT +Y V
Sbjct: 3 EDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAV 62
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
PLI+++ T+ + +E RA +VL P L +QV M L+A VR
Sbjct: 63 PLIQRVLTS------KQTVREQAV-RA--VVLVPTKELGQQVQTMIRQLTAYCSRD-VRV 112
Query: 201 VAVCGGQGW----PI--GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ G PI KPD++VSTP+ + +I+ + ++ ++ +V DEAD+L
Sbjct: 113 ADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQN---LQLHSSLEMLVIDEADLLF 169
Query: 255 CGSFQNQVIRLI 266
F+ + L+
Sbjct: 170 SFGFEADLKNLL 181
Score = 122 (48.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
+RGID NVS+VI DF TS ++HRVGRTARA G S + + ++ + A
Sbjct: 348 SRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEVENA 405
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 185 (70.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/114 (35%), Positives = 64/114 (56%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAA 484
+ ++F+ T V +T L G+ +H DLS R K L F++ V V TD AA
Sbjct: 247 QVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAA 306
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DI + +VI + A D++HR+GRT RAG GL +L+++ + L++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360
Score = 150 (57.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 65/275 (23%), Positives = 135/275 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ +L L+ +L+ L G+ +P+ +Q ++ +L+ +DV+ A+TG+GKT ++ +P++
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPLVR 199
+ L + D+++ ++ K RA LVL P L QV V+ A G
Sbjct: 61 QLL---MADNQSDHAAKAI---RA--LVLVPTRELALQVQQSFVKYAKGTDIRVGIAY-G 111
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V++ Q DV+++TP LL+++ R+ + + + +VFDEAD +L F
Sbjct: 112 GVSIEAQQAVFNAGIDVLIATPGRLLDHL---RQGALN-LNQLNTLVFDEADRMLDMGFM 167
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQD--EENLQDEYISDEGNF 317
+++ ++ ++Q + + + + L P + + N I ++ +
Sbjct: 168 DEIQAVLKQVPA-QRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQI-EQRVY 225
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
DSD + E S ++ K+W++V + R+KQ
Sbjct: 226 AIDSDRK---TEFVSHLVRSKNWQQVLI-FSRTKQ 256
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 185 (70.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 40/114 (35%), Positives = 64/114 (56%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAA 484
+ ++F+ T V +T L G+ +H DLS R K L F++ V V TD AA
Sbjct: 247 QVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAA 306
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DI + +VI + A D++HR+GRT RAG GL +L+++ + L++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360
Score = 150 (57.9 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 65/275 (23%), Positives = 135/275 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ +L L+ +L+ L G+ +P+ +Q ++ +L+ +DV+ A+TG+GKT ++ +P++
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPLVR 199
+ L + D+++ ++ K RA LVL P L QV V+ A G
Sbjct: 61 QLL---MADNQSDHAAKAI---RA--LVLVPTRELALQVQQSFVKYAKGTDIRVGIAY-G 111
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V++ Q DV+++TP LL+++ R+ + + + +VFDEAD +L F
Sbjct: 112 GVSIEAQQAVFNAGIDVLIATPGRLLDHL---RQGALN-LNQLNTLVFDEADRMLDMGFM 167
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQD--EENLQDEYISDEGNF 317
+++ ++ ++Q + + + + L P + + N I ++ +
Sbjct: 168 DEIQAVLKQVPA-QRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQI-EQRVY 225
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
DSD + E S ++ K+W++V + R+KQ
Sbjct: 226 AIDSDRK---TEFVSHLVRSKNWQQVLI-FSRTKQ 256
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 175 (66.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + +L L L+ L + G+ + +QA S+ +L+G+DV+ +TGSGKT ++ + L+
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL D + R +LVLCP L +QV + L+ G V+ + +
Sbjct: 61 NKL-----DVKRF---------RIQTLVLCPTRELADQVAQEIRTLA--RGIHNVKVLTL 104
Query: 204 CGG--QGWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
CGG G IG + +IV TP +++++D R R++ + + +V DEAD +L
Sbjct: 105 CGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLD---RNRLD-LSNLNMLVLDEADRMLEMG 160
Query: 258 FQNQVIRLI 266
FQ Q+ +I
Sbjct: 161 FQPQLDAII 169
Score = 163 (62.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 52/185 (28%), Positives = 85/185 (45%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD-TQV 407
R +Q + +AT P + ++ KQ+ + + H N +++ + ++ D +++
Sbjct: 174 RERQTLLFSATFP----EQIQSIAKQIMYNPVMVKAAVTHEKNT-IEQHFYQLDDDKSRM 228
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
AL + LE E++ +VF NT V L+ G H DL +R +TL
Sbjct: 229 QALQLLL---LEHKPESA--VVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETL 283
Query: 468 VNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ F K V V TD AARG+DI + V A +HR+GRT RAG G +
Sbjct: 284 LQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTF 343
Query: 527 YTESN 531
Y + +
Sbjct: 344 YNDQD 348
Score = 37 (18.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 396 EKWIEVTVDTQVDALIE-AVKER--LEFGA------ETSRTMVFANTVDAVYAVTKILKT 446
++ +E+ Q+DA+IE + +ER L F A ++ + N V AVT T
Sbjct: 154 DRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNT 213
Query: 447 AGIECYCYHKD 457
IE + Y D
Sbjct: 214 --IEQHFYQLD 222
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 175 (66.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 57/189 (30%), Positives = 98/189 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + +L L L+ L + G+ + +QA S+ +L+G+DV+ +TGSGKT ++ + L+
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL D + R +LVLCP L +QV + L+ G V+ + +
Sbjct: 61 NKL-----DVKRF---------RIQTLVLCPTRELADQVAQEIRTLA--RGIHNVKVLTL 104
Query: 204 CGG--QGWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
CGG G IG + +IV TP +++++D R R++ + + +V DEAD +L
Sbjct: 105 CGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLD---RNRLD-LSNLNMLVLDEADRMLEMG 160
Query: 258 FQNQVIRLI 266
FQ Q+ +I
Sbjct: 161 FQPQLDAII 169
Score = 163 (62.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 52/185 (28%), Positives = 85/185 (45%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD-TQV 407
R +Q + +AT P + ++ KQ+ + + H N +++ + ++ D +++
Sbjct: 174 RERQTLLFSATFP----EQIQSIAKQIMYNPVMVKAAVTHEKNT-IEQHFYQLDDDKSRM 228
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
AL + LE E++ +VF NT V L+ G H DL +R +TL
Sbjct: 229 QALQLLL---LEHKPESA--VVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETL 283
Query: 468 VNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ F K V V TD AARG+DI + V A +HR+GRT RAG G +
Sbjct: 284 LQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTF 343
Query: 527 YTESN 531
Y + +
Sbjct: 344 YNDQD 348
Score = 37 (18.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 396 EKWIEVTVDTQVDALIE-AVKER--LEFGA------ETSRTMVFANTVDAVYAVTKILKT 446
++ +E+ Q+DA+IE + +ER L F A ++ + N V AVT T
Sbjct: 154 DRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNT 213
Query: 447 AGIECYCYHKD 457
IE + Y D
Sbjct: 214 --IEQHFYQLD 222
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 194 (73.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 45/122 (36%), Positives = 62/122 (50%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 440 SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 499
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 500 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 559
Query: 540 RA 541
A
Sbjct: 560 EA 561
Score = 148 (57.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 55/194 (28%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 179 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 237
Query: 144 EKLCTALGDSENSNSDKEPTP----PRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ T G E + KE + P SLVL P L Q+ A S + V
Sbjct: 238 SQIYTD-GPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 293
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 294 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 349
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 350 MLDMGFEPQIRRIV 363
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 194 (73.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 45/122 (36%), Positives = 62/122 (50%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 441 SLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 500
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 560
Query: 540 RA 541
A
Sbjct: 561 EA 562
Score = 148 (57.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 55/194 (28%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 144 EKLCTALGDSENSNSDKEPTP----PRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ T G E + KE + P SLVL P L Q+ A S + V
Sbjct: 239 SQIYTD-GPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 294
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 295 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 350
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 351 MLDMGFEPQIRRIV 364
Score = 39 (18.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 302 DEENLQD-EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL 360
DE D E + G G E + DW + +R +Q +F
Sbjct: 96 DERGRSDYESVGSRGGRSGFGKFERGGNSRWCDKADEDDWSKPLPPSERLEQELFSGGNT 155
Query: 361 PINGKK 366
IN +K
Sbjct: 156 GINFEK 161
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 182 (69.1 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 56/189 (29%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGL L+ L + +P+ +QA ++ V +G+D++ A TGSGKT ++ +P+++
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-NGEPLVRAVAV 203
KL + ++ T LVL P L +QV + + NGE ++ +AV
Sbjct: 69 KLREDISSGSKNSKGNFVT-----GLVLVPTRELAKQVADSIKSYAVHFNGE--IKTLAV 121
Query: 204 CGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG I G D++V+TP LL+ I + + VK +V DEAD +L
Sbjct: 122 FGGVSVNIQMLALRGGVDILVATPGRLLDLISSNAIK----LDKVKTLVLDEADRMLSLG 177
Query: 258 FQNQVIRLI 266
F ++ L+
Sbjct: 178 FTEELTALL 186
Score = 154 (59.3 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ ++F N + + L GI +H D ER++ L F K G V + TD
Sbjct: 257 QALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGF--KAGDIEVLIATDI 314
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DI + VI + S D++HR+GR+ RAG+ GL SL
Sbjct: 315 AARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISL 358
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 177 (67.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 57/195 (29%), Positives = 90/195 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V +
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQTILQVGQYS 527
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 528 KREKLVEILRS---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 582
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 583 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 643 SFFDPESDNHLAQPL 657
Score = 167 (63.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 53/190 (27%), Positives = 99/190 (52%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ +L+G+D++ A+TGSGKT ++L+P++
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 349 AHM---MHDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 400
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G+ I + +++ +TP L++ I ++ +R VKY+V DEAD +L
Sbjct: 401 YGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIG----LRQVKYLVLDEADRMLDMG 456
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 457 FGPEMKKLIS 466
>DICTYBASE|DDB_G0281841 [details] [associations]
symbol:ddx24 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281841 GO:GO:0005524 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_640452.1 ProteinModelPortal:Q54TD7
EnsemblProtists:DDB0234200 GeneID:8623265 KEGG:ddi:DDB_G0281841
KO:K14805 OMA:NIDHVAH Uniprot:Q54TD7
Length = 940
Score = 219 (82.2 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 91/388 (23%), Positives = 172/388 (44%)
Query: 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGK-PDVIVSTPA 222
SLV+CP L QV ++ + ++ +++ GG Q + K P+++V+TP
Sbjct: 407 SLVICPTRELAIQVTNHIKSIISHTN---LKVISIVGGMASQRQQRVLSKRPEIVVATPG 463
Query: 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNES 282
L I G +++V E + LLC ++ R++ F E + S +
Sbjct: 464 RLWELI----------TEGHQHLV--ELESLLCLGI-DEADRMVEQGHFAELE-SILKTL 509
Query: 283 GVEKPLEMDNSSLTQPDLQDEENLQDEY--ISDEGNF-EGDSD-VEGLTEETKSGSIKKK 338
+ + L + + +++ N + + ++D+G +GD D ++ + + ++++
Sbjct: 510 PIHRTAMSKKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQE 569
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
+ + ++R + ++F A + I G A K+ + I N + + K
Sbjct: 570 EQNHLTTTHKR-QTFVFSATLVNIPGDG-APTSQKKKYRKLTPIE-NLIEKVRFQRDYKL 626
Query: 399 IEVT---------VDTQVDALIEAVKERLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
I+VT ++T++ +E L + E RT+VF N++D + I
Sbjct: 627 IDVTQKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFNIL 686
Query: 448 GIECYCYHKDLSLEERAKTLVNFQEKGGV-FVCTDAAARGIDIPNVSHVIQADFATSAVD 506
+ + H + ++R K L F+ V + TD AARG+DIP V HVI +
Sbjct: 687 EVPVFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQL 746
Query: 507 FLHRVGRTARAGQYGLVTSLYTESNRDL 534
++HR GRTAR+ Q G+ L T R L
Sbjct: 747 YIHRSGRTARSDQDGISVVLVTPKERPL 774
Score = 125 (49.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL--SGKDVVIAAETGSGKTHSYL 139
D W S L +++ L + GF +P+ +Q+ SV PV SG DV+ AA+TGSGKT ++
Sbjct: 292 DMSEWNSYNLDPLILKGLRSLGFSKPTEIQS-SVIPVAVSSGYDVIGAAQTGSGKTLAFG 350
Query: 140 VPLIEKLCTAL---GDSENSNSDKE 161
+P+++++ L G + + ++K+
Sbjct: 351 IPMVQRILQHLRKHGQNVENKANKQ 375
Score = 40 (19.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 82 DNVTWKSLGLSDRLIRALENSGF 104
+N WK + ++LI E GF
Sbjct: 8 ENTNWKKIDTDNQLI--FEQGGF 28
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 182 (69.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 56/200 (28%), Positives = 91/200 (45%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
SKQ + +AT+P + KK A K+ + I ++++ IE T + DA
Sbjct: 179 SKQTMLFSATIPKDIKKLA----KRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDA 234
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L V +R + ++F T + LK G C H D+ +R + + +
Sbjct: 235 L-RFVMDR----DQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKS 289
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E K + TD AARG+D+ V+HV D ++HR+GRT RAG GL +
Sbjct: 290 FREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA 349
Query: 529 ESNRDLVDTIRRAAKLGQPV 548
+ ++ I + LG P+
Sbjct: 350 AKDEKHLEEIEKT--LGAPI 367
Score = 154 (59.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 47/176 (26%), Positives = 88/176 (50%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LG+S+ L +G + +Q ++ +LSGKD++ A+TG+GKT ++++P++EK+
Sbjct: 10 LGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI-- 67
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
D E+S+ +L++ P L Q+ + + + +A+ GGQ
Sbjct: 68 ---DPESSD---------VQALIVAPTRELALQITTEIKKMLVQRED--INVLAIYGGQD 113
Query: 209 WPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G ++V+TP LL++I RR ++ + + +V DEAD +L F
Sbjct: 114 VAQQLRKLKGNTHIVVATPGRLLDHI---RRETID-LSNLSTIVLDEADQMLYFGF 165
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 182 (69.1 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 56/200 (28%), Positives = 91/200 (45%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
SKQ + +AT+P + KK A K+ + I ++++ IE T + DA
Sbjct: 179 SKQTMLFSATIPKDIKKLA----KRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDA 234
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L V +R + ++F T + LK G C H D+ +R + + +
Sbjct: 235 L-RFVMDR----DQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKS 289
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E K + TD AARG+D+ V+HV D ++HR+GRT RAG GL +
Sbjct: 290 FREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVA 349
Query: 529 ESNRDLVDTIRRAAKLGQPV 548
+ ++ I + LG P+
Sbjct: 350 AKDEKHLEEIEKT--LGAPI 367
Score = 154 (59.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 47/176 (26%), Positives = 88/176 (50%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LG+S+ L +G + +Q ++ +LSGKD++ A+TG+GKT ++++P++EK+
Sbjct: 10 LGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKI-- 67
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
D E+S+ +L++ P L Q+ + + + +A+ GGQ
Sbjct: 68 ---DPESSD---------VQALIVAPTRELALQITTEIKKMLVQRED--INVLAIYGGQD 113
Query: 209 WPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G ++V+TP LL++I RR ++ + + +V DEAD +L F
Sbjct: 114 VAQQLRKLKGNTHIVVATPGRLLDHI---RRETID-LSNLSTIVLDEADQMLYFGF 165
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 189 (71.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 64/222 (28%), Positives = 110/222 (49%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L G+DVV A TGSGKT +L+P+ E+
Sbjct: 38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L K P+P A +L+L P L Q ++ L G ++ V G
Sbjct: 98 L-------------KAPSPSGARALILSPTRELALQTLKFTKELGKFTG---LKTALVLG 141
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + + +++ V+YVVFDEAD L F
Sbjct: 142 GDKMEDQFAALHENPDIIIATPGRLVH-VAVEMNLKLQ---SVEYVVFDEADRLFEMGFA 197
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ ++ R + + + + K L E + LT+P L
Sbjct: 198 EQLQEILA--RLPGSHQTVLFSATLPKLLVEFARAGLTEPML 237
Score = 155 (59.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 42/104 (40%), Positives = 58/104 (55%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK--TLVNFQE-KGGVFVCTDA 482
+T+VF T + ++L + GI C C H SL++ A+ + F K V + TD
Sbjct: 279 QTVVFVATKHHTEYLKELLTSQGI-C-CTHIYSSLDQTARKINIAKFAHGKCQVLLVTDV 336
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DIP + +VI F + FLHRVGR ARAG+ G SL
Sbjct: 337 AARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSL 380
Score = 42 (19.8 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354
D E L GS++ + RRV N Q KQY+
Sbjct: 429 DEECLLLTDHEGSLELQSLRRVADNAQ--KQYL 459
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 192 (72.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 56/210 (26%), Positives = 103/210 (49%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNPR-LKE 396
R++ + +Q + +AT P K+ A L Q+ + +S N HN R + +
Sbjct: 450 RKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSAN----HNIRQVVD 505
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
E + + ++ L+ + + E + ++F T V + + +++ G+ C H
Sbjct: 506 VCDEFSKEEKLKTLLSDIYDTSE---SPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHG 562
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D S ER L F+ K + V TD AARG+D+ + +VI D+ ++ D++HR+GRT
Sbjct: 563 DKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTG 622
Query: 516 RAGQYGLVTSLYTESN----RDLVDTIRRA 541
R+ G + +T++N + LVD +R A
Sbjct: 623 RSNTKGTSFAFFTKNNAKQAKALVDVLREA 652
Score = 150 (57.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 49/189 (25%), Positives = 90/189 (47%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L D +++ + G+ P+ +QA +SG + V A+TGSGKT Y++P I +
Sbjct: 288 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHI---- 343
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN--GEPLVRAVAVCGGQG 208
N + P A LVL P L +Q+ ++A + + V A GGQ
Sbjct: 344 ---NNQQPLQRGDGPIA--LVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQM 398
Query: 209 WPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLIN 267
+ + +++++TP L++ + ++ Y+V DEAD +L F+ Q+ ++++
Sbjct: 399 RDLQRGCEIVIATPGRLIDFLSAGSTN----LKRCTYLVLDEADRMLDMGFEPQIRKIVS 454
Query: 268 MFRFDEKQL 276
R D + L
Sbjct: 455 QIRPDRQTL 463
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 196 (74.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 45/122 (36%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +R + L F+ + + V T A
Sbjct: 474 SLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVA 533
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + + N +DL+D +
Sbjct: 534 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILV 593
Query: 540 RA 541
A
Sbjct: 594 EA 595
Score = 145 (56.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 57/202 (28%), Positives = 102/202 (50%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
L + + ++ + S + RP+ VQ ++ + S +D++ A+TGSGKT ++L+P++ ++ T
Sbjct: 213 LEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYT 272
Query: 149 -----ALGDSENSNSD--KEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
AL ++NS + K + P SLVL P L Q+ A S + VR
Sbjct: 273 DGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH---VRP 329
Query: 201 VAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG G I + ++V+TP LL+ ++ + + +++ Y+V DEAD +L
Sbjct: 330 CVVYGGADIGQQIRDLERGCHLLVATPGRLLDMME-RGKIGLDYCN---YLVLDEADRML 385
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F+ Q+ R++ K L
Sbjct: 386 DMGFEPQIRRIVEQDTMPPKGL 407
Score = 45 (20.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNY 347
+ ++TQ + EEN + ++ D N G + + ETK G+ +D+ R+ Y
Sbjct: 444 SENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFL-YREGY 498
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 192 (72.6 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 45/149 (30%), Positives = 78/149 (52%)
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
RL++K++ V + L+ VK E ++S M+FA T A+ + + G
Sbjct: 307 RLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSS-VMIFAQTCRECQALAYMFEGLGFRVG 365
Query: 453 CYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H + ++R L F+ K V +CTD A+RG+DIP+V V+ + ++HRV
Sbjct: 366 SLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRV 425
Query: 512 GRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GR+ARAG++G S T+ + +L+ + +
Sbjct: 426 GRSARAGRFGSALSFVTQYDVELLQAVEQ 454
Score = 146 (56.5 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 60/243 (24%), Positives = 109/243 (44%)
Query: 80 ADDNVTWKS---LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
++DN+T K LG+ + + L+ + VQAA + +L G D++ A TG+GKT
Sbjct: 82 SEDNMTTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTL 141
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
++ +P+++KL D P +L+L P L Q+ AL
Sbjct: 142 AFAIPILQKLSV----------D----PYGIYALILTPTRELAFQIAEQFTALGKPI--T 185
Query: 197 LVRAVAVCGG----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
L +V V G Q + +P V+V+TP L + I+ + + +++ V DEAD
Sbjct: 186 LKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEAD 245
Query: 252 MLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEM-DNSSLTQPDLQDEENLQDEY 310
+L G + +Q+ + EK+ + + + + + M S +P +++ DE
Sbjct: 246 RMLEGQYNDQLKPIFESI--SEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDES 303
Query: 311 ISD 313
D
Sbjct: 304 TVD 306
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 172 (65.6 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL L++A+ G+ P+ +Q ++ +L+GK+V+ AA+TG+GKT S+++PL+ +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
A + P R S++L P L QV + N + PL A+A+ G
Sbjct: 63 FADA----------PKIRPKRVRSIILTPTRELALQVEQNINQYA--KYLPLT-AMAMYG 109
Query: 206 G-QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P K D++V+TP LL D +R + F V +V DEAD +L F
Sbjct: 110 GVDAAPQKKRLIEGVDLLVATPGRLL---DMYTQRAIRFDE-VSVLVLDEADRMLDMGFI 165
Query: 260 NQVIRLI 266
+ +I
Sbjct: 166 EDINNII 172
Score = 165 (63.1 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 57/207 (27%), Positives = 95/207 (45%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + +Q + +ATL K A+ K PDA I + + + ++ ++
Sbjct: 166 EDINNIIEKLPEQRQNLLFSATL----SKQVKALAKTAIPDAIEIEISRKNAASTQI-DQ 220
Query: 398 WIEVTVDT-QVDALIE-AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
W+ TVD + AL+ +KE ++ ++F T + L+ GI +H
Sbjct: 221 WL-TTVDKDRKSALLSHLIKEN-----NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFH 274
Query: 456 KDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
S R + L++F+ K V T +RGIDI + VI D A D++HR+GRT
Sbjct: 275 SGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRT 334
Query: 515 ARAGQYGLVTSLYTESN-RDLVDTIRR 540
RAG G S ++ + R+L RR
Sbjct: 335 GRAGNQGEAISFVSKDDFRNLCAIERR 361
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 172 (65.6 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL L++A+ G+ P+ +Q ++ +L+GK+V+ AA+TG+GKT S+++PL+ +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
A + P R S++L P L QV + N + PL A+A+ G
Sbjct: 63 FADA----------PKIRPKRVRSIILTPTRELALQVEQNINQYA--KYLPLT-AMAMYG 109
Query: 206 G-QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P K D++V+TP LL D +R + F V +V DEAD +L F
Sbjct: 110 GVDAAPQKKRLIEGVDLLVATPGRLL---DMYTQRAIRFDE-VSVLVLDEADRMLDMGFI 165
Query: 260 NQVIRLI 266
+ +I
Sbjct: 166 EDINNII 172
Score = 165 (63.1 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 57/207 (27%), Positives = 95/207 (45%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + +Q + +ATL K A+ K PDA I + + + ++ ++
Sbjct: 166 EDINNIIEKLPEQRQNLLFSATL----SKQVKALAKTAIPDAIEIEISRKNAASTQI-DQ 220
Query: 398 WIEVTVDT-QVDALIE-AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
W+ TVD + AL+ +KE ++ ++F T + L+ GI +H
Sbjct: 221 WL-TTVDKDRKSALLSHLIKEN-----NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFH 274
Query: 456 KDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
S R + L++F+ K V T +RGIDI + VI D A D++HR+GRT
Sbjct: 275 SGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRT 334
Query: 515 ARAGQYGLVTSLYTESN-RDLVDTIRR 540
RAG G S ++ + R+L RR
Sbjct: 335 GRAGNQGEAISFVSKDDFRNLCAIERR 361
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 171 (65.3 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 49/196 (25%), Positives = 91/196 (46%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R V N+ +Q + +AT+P ++ A + L + P ++ N + ++
Sbjct: 399 DIRSVLDNFTNQRQTLLFSATMPKKIQEFARSAL--VLPVE--VNVGRAGAANLNVTQEV 454
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + ++ L+E +++ ++F V + + L +E H D
Sbjct: 455 EFVKPEAKIVYLLECLQKT------PPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDK 508
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +ER + F+E K V V TD A++G+D P + HVI D +++HR+GRT R
Sbjct: 509 SQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRR 568
Query: 518 GQYGLVTSLYTESNRD 533
G G+ T+ ++N +
Sbjct: 569 GNKGVATTFINKNNTE 584
Score = 170 (64.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/224 (28%), Positives = 110/224 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K + + +I L G +PS +Q + +LSG+D++ A TGSGKT + +P++
Sbjct: 223 TFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV- 281
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ----VVRMANALSADNGEPLVRA 200
AL + E + P L+LCP+ L Q V NAL + G P +R
Sbjct: 282 --LFAL-EEECKLPIIQGEGPFG--LILCPSRELARQTYDLVNSFTNALHKNGGHPQLRT 336
Query: 201 VAVCGG----QGWPIGKPDV--IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG + I K V I++TP LL+ ++ K+ + F + KY+ DEAD L+
Sbjct: 337 LLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKK---INF-KLCKYLGLDEADRLI 392
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F++ + +++ F +++Q + + +K E S+L P
Sbjct: 393 DLGFEDDIRSVLDNFT-NQRQTLLFSATMPKKIQEFARSALVLP 435
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 190 (71.9 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 45/155 (29%), Positives = 83/155 (53%)
Query: 399 IEVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 313 VDVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGD 370
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR
Sbjct: 371 KSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR 430
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T N R+L+ + A + P
Sbjct: 431 STNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 465
Score = 145 (56.1 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 52/186 (27%), Positives = 93/186 (50%)
Query: 98 ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157
AL + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 104 ALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPY 157
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 158 LERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDL 210
Query: 214 ---PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 211 ERGVEICIATPGRLIDFLEAGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Query: 271 FDEKQL 276
D + L
Sbjct: 267 PDRQTL 272
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 183 (69.5 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++ ++F T +T+ L+ G H D + +ER L F+ K + V TD A
Sbjct: 370 NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVA 429
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
+RGID+ ++HV DF + D++HR+GRT RAG G + +T N R+LV +
Sbjct: 430 SRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILS 489
Query: 540 RA 541
A
Sbjct: 490 EA 491
Score = 154 (59.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ G + +++ ++ GF P+ +Q + +SG+D+V + TGSGKT SY +P I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ +P P LVL P L Q+ + + +R V
Sbjct: 183 HI----------NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSR---IRNTCV 229
Query: 204 CGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I ++ ++TP LL+ +D + +R V Y+V DEAD +L
Sbjct: 230 YGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTN----LRRVTYLVLDEADRMLDMG 285
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ ++++ R D +
Sbjct: 286 FEPQIRKIVDQIRPDRQ 302
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 184 (69.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 61/210 (29%), Positives = 104/210 (49%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
S+TF ++ W SL LS+ L+R L + +P+ +Q AS+ P+L G D ++ A+TGSG
Sbjct: 201 SETF---SSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSG 257
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
KT SYL+P+++KL + + SD +++ P L Q+ L
Sbjct: 258 KTLSYLIPVVQKLT----EQRVTRSDG------CYCVIITPTRELSSQIYEELQKLL--- 304
Query: 194 GEPLVRAVA--VCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+P V + GG+ K +++V+TP LL+++ + + +K+
Sbjct: 305 -KPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTD---NIKWC 360
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQ 275
+ DEAD LL F+ V +IN+ D K+
Sbjct: 361 ILDEADKLLDLGFEKDVTTIINLL--DSKK 388
Score = 159 (61.0 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 31/100 (31%), Positives = 56/100 (56%)
Query: 444 LKTA--GIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADF 500
+KT+ + + H +L + R KT +F+ G+ + TD +ARG+D+P+V+ ++Q D
Sbjct: 597 VKTSVFSVPIFKLHGELDQQTRTKTFFDFKNSPNGILLTTDVSARGLDLPSVNWIVQYDP 656
Query: 501 ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+ D++HR+GRTAR G G S + +D + +
Sbjct: 657 CSDTKDYIHRIGRTARLGNQGCSLLFLLPSEKKYIDHLAK 696
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 175 (66.7 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 58/189 (30%), Positives = 98/189 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ L L+ +++A+ G+ P+ VQAA+V L D++ A+TG+GKT ++++P +
Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
++L S P R P LVL P L +QV +A+ VR+ A
Sbjct: 61 QRL-----------SSPPQGPGRGPRVLVLTPTRELAQQVT---DAVRTYGAFMRVRSGA 106
Query: 203 VCGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG + + P D IV+TP L++ +D RR ++ R ++ +V DEAD +L
Sbjct: 107 ILGGMPYHAQLRLLSAPVDFIVATPGRLVDLLD---RRSLDLSR-LELLVLDEADRMLDM 162
Query: 257 SFQNQVIRL 265
F + V R+
Sbjct: 163 GFSDDVDRI 171
Score = 159 (61.0 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
R ++F+ T + LK G H D+ R +T+ ++ + + V TD AA
Sbjct: 246 RAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
RG+D+ +SHVI D A D++HR+GRT RAG G+ S + + + + I R
Sbjct: 306 RGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIER 361
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 179 (68.1 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 56/187 (29%), Positives = 88/187 (47%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407
+ +Q + +AT P + + A +LK PD ++ + +++ IEV +
Sbjct: 470 KEERQTLMFSATFPSSIQSLAREILK---PDYLFVVVGQVGGACSDVEQMVIEVDEFGKK 526
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L+E ++E G+E RTMVF T + L + H D +ER L
Sbjct: 527 DKLMEILQE---IGSE--RTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETAL 581
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+F+ + V V T AARG+DI NVS+VI D +++HR+GRT R G G S
Sbjct: 582 RDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISF 641
Query: 527 YTESNRD 533
+ + D
Sbjct: 642 FDKRGDD 648
Score = 161 (61.7 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 52/198 (26%), Positives = 100/198 (50%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L D L + + SG+ + + +Q S+ +++G+D++ A+TGSGKT ++L+P++
Sbjct: 286 LTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L +S + KEP ++++ P L Q+ A S VR V +
Sbjct: 346 AHLMVKGVESSAFQTLKEPE-----AIIVAPTRELINQIYLDARKFSYGT---CVRPVVI 397
Query: 204 CGG-QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K +++ +TP LL+ I R+ ++ + ++Y+V DEAD +L
Sbjct: 398 YGGTQMFHSLKQISEGCNILCATPGRLLDVI---RKEKIGLTK-LRYLVLDEADRMLDMG 453
Query: 258 FQNQVIRLINMFRFDEKQ 275
F+ + L+ K+
Sbjct: 454 FREDIENLLKSSGMPSKE 471
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 190 (71.9 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 46/125 (36%), Positives = 64/125 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L G C H D S +R + L F+ K + V T A
Sbjct: 443 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVA 502
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV---TSLYTESN----RDLVD 536
ARG+DI NV HVI D + +++HR+GRT R G GL+ TS + E N +DL+D
Sbjct: 503 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLD 562
Query: 537 TIRRA 541
+ A
Sbjct: 563 LLVEA 567
Score = 148 (57.2 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 55/194 (28%), Positives = 102/194 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLI 143
++ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 182 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPIL 240
Query: 144 EKLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
++ T G E + KE + P SLVL P L Q+ A S + V
Sbjct: 241 SQIYTD-GPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---V 296
Query: 199 RAVAVCGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG G I + ++V+TP L++ ++ + + ++F KY+V DEAD
Sbjct: 297 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADR 352
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ R++
Sbjct: 353 MLDMGFEPQIRRIV 366
Score = 40 (19.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ ++TQ + EE+ + ++ D N G + + ETK G+ +D+
Sbjct: 413 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 461
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 179 (68.1 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 57/195 (29%), Positives = 91/195 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V +
Sbjct: 445 KEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRD-----VQQTILQVGQYS 499
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 500 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 554
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 555 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 614
Query: 525 SLY-TESNRDLVDTI 538
S + T+S+ L +
Sbjct: 615 SFFDTDSDNHLAQPL 629
Score = 160 (61.4 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 52/190 (27%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ VL+G+D++ A+TGSGKT ++L+P++
Sbjct: 261 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 320
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 321 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 372
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G + + +++ +TP L++ I ++ ++ VKY+V DEAD +L
Sbjct: 373 YGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIG----LKQVKYLVLDEADRMLDMG 428
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 429 FGPEMKKLIS 438
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 179 (68.1 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 64/222 (28%), Positives = 108/222 (48%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT +L+P+ E+
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T RA L+L P L Q ++ L G ++ + G
Sbjct: 157 L----------KARSAQTGARA--LILSPTRELALQTMKFTKELGKFTG---LKTALILG 201
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + + +++ V+YVVFDEAD L F
Sbjct: 202 GDKMEDQFAALHENPDIIIATPGRLVH-VAVEMNLKLQ---SVEYVVFDEADRLFEMGFA 257
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ +I R + + + + K L E + LT+P L
Sbjct: 258 EQLQEIIG--RLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 297
Score = 163 (62.4 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 45/137 (32%), Positives = 64/137 (46%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +LK + V DT+ L+ ++ + + +VF T +T++L G+
Sbjct: 307 NEQLKTSFFLVREDTKTAVLLYLLQNVVR---PQDQNVVFVATKHHAEYLTELLTGQGVS 363
Query: 451 CYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C + L R L F K + TD AARG+DIP + +VI F FLH
Sbjct: 364 CAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLH 423
Query: 510 RVGRTARAGQYGLVTSL 526
RVGR ARAG+ G SL
Sbjct: 424 RVGRVARAGRSGTAYSL 440
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 178 (67.7 bits), Expect = 4.4e-22, Sum P(3) = 4.4e-22
Identities = 68/259 (26%), Positives = 124/259 (47%)
Query: 70 DKNGSSDTFFADDNVTWK--------SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
D + +++F ++N T K S GL+ ++ + G+ +P+ +Q ++ ++ G
Sbjct: 77 DDDSKINSYFINNNPTAKKAKAGSFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEG 136
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181
+DVV A TGSGKT ++++PLIE+L ++P RA ++L P+ L Q
Sbjct: 137 RDVVGMARTGSGKTAAFVLPLIERL-----------KSRQPGGVRA--VILSPSRELALQ 183
Query: 182 VVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235
+ S +G L +++ + GG + KPD+IV TP L+ +
Sbjct: 184 TYKQVKEFS--HGTNL-QSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLH-----LKVE 235
Query: 236 MEF-VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNS 293
M++ + V+Y+VFDEAD L F Q+ L+ + + L + + + + L + +
Sbjct: 236 MQYDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSL--LFSATLPRSLVDFAKA 293
Query: 294 SLTQP---DLQDEENLQDE 309
LT P L E + D+
Sbjct: 294 GLTNPVLVRLDAESKISDQ 312
Score = 168 (64.2 bits), Expect = 4.4e-22, Sum P(3) = 4.4e-22
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 427 TMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
T+VF T V VTK+L+ AG + Y Y +L++ A+ +Q + G V V TD
Sbjct: 397 TIVFVPTKHHVEYVTKLLRDAGYLVSYIYG---TLDQHARKNQLYQFRVGLTNVLVVTDV 453
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
AARGIDIP +++VI S+ F+HRVGRTARAG G S+ E
Sbjct: 454 AARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNE 500
Score = 40 (19.1 bits), Expect = 4.4e-22, Sum P(3) = 4.4e-22
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 300 LQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVR 344
L EE ++ D+ + DS+ + EE K G K+ +++ R
Sbjct: 341 LGSEEQIKKLKDMDKRKIDSDSEDDDDDEERKKGK-KRYKFKKER 384
Score = 39 (18.8 bits), Expect = 7.7e-08, Sum P(3) = 7.7e-08
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 156 SNSDKEPTPP 165
S+ +KEP+PP
Sbjct: 39 SDDEKEPSPP 48
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 175 (66.7 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A+ + +VF T ++ L + +C H D+S +R +TL F++ + V T
Sbjct: 347 AKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVAT 405
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D AARG+D+PNV +I + + F+HR GRT RAG+ G +Y++ V I R
Sbjct: 406 DVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIER 465
Score = 162 (62.1 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 62/215 (28%), Positives = 101/215 (46%)
Query: 73 GSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGS 132
G S++ D + LG+S +++AL + G + +Q A + P + G+D++ A TG+
Sbjct: 94 GDSESV-GGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGT 152
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD 192
GKT ++ +P+I+K+ N+ + P LVL P L QV + SA
Sbjct: 153 GKTLAFGIPIIDKII-----KYNAKHGRGRNPL---CLVLAPTRELARQVEKEFRE-SA- 202
Query: 193 NGEPLVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
P + + + GG PIG+ DV V TP + ID +R + V++
Sbjct: 203 ---PSLDTICLYGGT--PIGQQMRQLDYGVDVAVGTPGRV---IDLMKRGALNLSE-VQF 253
Query: 245 VVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRM 279
VV DEAD +L F V ++ + EK+ S M
Sbjct: 254 VVLDEADQMLQVGFAEDVEIILE--KLPEKRQSMM 286
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 192 (72.6 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 399 IEVTVDTQVDA-LIEAVKERLEFGAETSR--TMVFANTVDAVYAVTKILKTAGIECYCYH 455
+E +D+ + L++ + + E G + + T+VF T ++ L G H
Sbjct: 390 VEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIH 449
Query: 456 KDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D + +ER L F+ + + V TD AARG+DIP+V+HV+ D D++HR+GRT
Sbjct: 450 GDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRT 509
Query: 515 ARAGQYGLVTSLYTESNRDL 534
RAG+ GL T+ + + N L
Sbjct: 510 GRAGKSGLATAFFNDGNTSL 529
Score = 144 (55.7 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 51/191 (26%), Positives = 91/191 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L + L + + +P+ VQ ++ +L G+D++ A+TGSGKT ++ P+I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 145 KLCTALGDSENSNSDKEPTP-PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D T P A ++L P L Q+ A S G V+ V
Sbjct: 220 GI---MKDQHVQRPRGSRTVYPLA--VILSPTRELASQIHDEAKKFSYQTG---VKVVVA 271
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG PI + D++V+TP L N++ + R M+ +R ++ DEAD +L
Sbjct: 272 YGGT--PINQQLRELERGVDILVATPGRL-NDLLERARVSMQMIR---FLALDEADRMLD 325
Query: 256 GSFQNQVIRLI 266
F+ Q+ +++
Sbjct: 326 MGFEPQIRKIV 336
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 178 (67.7 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 65/222 (29%), Positives = 108/222 (48%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT +L+P+ E+
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T T RA L+L P L Q ++ L G ++ + G
Sbjct: 158 LKT----------HSAQTGARA--LILSPTRELALQTLKFTKELGKFTG---LKTALILG 202
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + + +++ V+YVVFDEAD L F
Sbjct: 203 GDRMEDQFAALHENPDIIIATPGRLVH-VAVEMSLKLQ---SVEYVVFDEADRLFEMGFA 258
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ +I R + + + + K L E + LT+P L
Sbjct: 259 EQLQEIIA--RLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 298
Score = 163 (62.4 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 46/137 (33%), Positives = 64/137 (46%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +LK + V DT+ L+ + + +T+VF T +T++L T +
Sbjct: 308 NEQLKTSFFLVREDTKAAVLLHLLHNVVR---PQDQTVVFVATKHHAEYLTELLTTQRVS 364
Query: 451 CYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C + L R L F K + TD AARG+DIP + +VI F FLH
Sbjct: 365 CAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLH 424
Query: 510 RVGRTARAGQYGLVTSL 526
RVGR ARAG+ G SL
Sbjct: 425 RVGRVARAGRSGTAYSL 441
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 187 (70.9 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 59/224 (26%), Positives = 107/224 (47%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D N W L +S ++ L F P+ +Q + L GK ++ +ETGSGKT ++++
Sbjct: 84 DMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVL 143
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++E+L ++ N+ K + +L+L P L Q + +L+ +
Sbjct: 144 PILERLLQSVNIKMRRNNMKG-SYNITKALILLPTRELSLQCYDVIRSLTK---YVTITY 199
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
CGG Q + K D+ V TP +L D +F+ ++ VVFDEAD LL
Sbjct: 200 SLFCGGIDIKQQEYEFKKRNDIFVCTPGRIL---DLLLNSSSDFINYLEIVVFDEADKLL 256
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + ++++++ +F +KQ+ + + ++ N SL P
Sbjct: 257 ELGFKEECLKILDVCKF-KKQILFFSATLTSDIKQLANFSLKNP 299
Score = 151 (58.2 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 32/117 (27%), Positives = 66/117 (56%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT-DAAARG 486
++F T + + + + C H +S ++R ++++ F++ F+ T + A+RG
Sbjct: 390 IIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRG 449
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
IDI +V +VI + ++ + ++HR+GRTAR G+ G+ ++LY + + V I + K
Sbjct: 450 IDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLK 506
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 285 EKPLEMDNSSLTQPDLQDEE-NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRV 343
+K ++DN S +P+ D++ N +D ++ D D + + EE K G+ ++ R
Sbjct: 14 KKMSDVDNVS--EPESYDKDINGKDN--TNRIKNVSDRDEDDV-EEMKEGTSERTSISRN 68
Query: 344 RKNYQRSKQ 352
KN + K+
Sbjct: 69 NKNSENPKK 77
Score = 39 (18.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 291 DNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKK-KDWRRV 343
D + + + + Q E N + ++ N + + +G EE + KK + +R++
Sbjct: 617 DVNHIKKKNSQKENNKKISTFNNYNNLKNKKNKKGNDEEDQEEQKKKLQSYRKI 670
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 351 KQYIFVAATLPINGKKTAGAVLK 373
KQ +F +ATL + K+ A LK
Sbjct: 275 KQILFFSATLTSDIKQLANFSLK 297
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 187 (70.9 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 59/224 (26%), Positives = 107/224 (47%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D N W L +S ++ L F P+ +Q + L GK ++ +ETGSGKT ++++
Sbjct: 84 DMNCLWSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVL 143
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++E+L ++ N+ K + +L+L P L Q + +L+ +
Sbjct: 144 PILERLLQSVNIKMRRNNMKG-SYNITKALILLPTRELSLQCYDVIRSLTK---YVTITY 199
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
CGG Q + K D+ V TP +L D +F+ ++ VVFDEAD LL
Sbjct: 200 SLFCGGIDIKQQEYEFKKRNDIFVCTPGRIL---DLLLNSSSDFINYLEIVVFDEADKLL 256
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + ++++++ +F +KQ+ + + ++ N SL P
Sbjct: 257 ELGFKEECLKILDVCKF-KKQILFFSATLTSDIKQLANFSLKNP 299
Score = 151 (58.2 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 32/117 (27%), Positives = 66/117 (56%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT-DAAARG 486
++F T + + + + C H +S ++R ++++ F++ F+ T + A+RG
Sbjct: 390 IIFFKTKRETHLMYLLFDLLNLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRG 449
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
IDI +V +VI + ++ + ++HR+GRTAR G+ G+ ++LY + + V I + K
Sbjct: 450 IDIDHVLYVINYNVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLK 506
Score = 44 (20.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 285 EKPLEMDNSSLTQPDLQDEE-NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRV 343
+K ++DN S +P+ D++ N +D ++ D D + + EE K G+ ++ R
Sbjct: 14 KKMSDVDNVS--EPESYDKDINGKDN--TNRIKNVSDRDEDDV-EEMKEGTSERTSISRN 68
Query: 344 RKNYQRSKQ 352
KN + K+
Sbjct: 69 NKNSENPKK 77
Score = 39 (18.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 291 DNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKK-KDWRRV 343
D + + + + Q E N + ++ N + + +G EE + KK + +R++
Sbjct: 617 DVNHIKKKNSQKENNKKISTFNNYNNLKNKKNKKGNDEEDQEEQKKKLQSYRKI 670
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 351 KQYIFVAATLPINGKKTAGAVLK 373
KQ +F +ATL + K+ A LK
Sbjct: 275 KQILFFSATLTSDIKQLANFSLK 297
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 202 (76.2 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 55/198 (27%), Positives = 100/198 (50%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGS 132
S+ + + DD TW S L RL++A++ GF P+++Q++++ L K D++ A TGS
Sbjct: 4 SASSSYLDDETTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGS 63
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS-- 190
GKT +Y +P++ L T DS S++L P L QV + L
Sbjct: 64 GKTAAYCIPIVNNLLT--DDSAQG----------IKSIILVPTRELSNQVFQFVEKLLTF 111
Query: 191 ADNGEPLVRAVAVCGGQ---GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ N ++ + Q + KP++I+STPA L+ ++ K + ++ + VK +
Sbjct: 112 STNKINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILE-KNEKNID-LSTVKNLTI 169
Query: 248 DEADMLLCGSFQNQVIRL 265
DE D++L + + + +L
Sbjct: 170 DEVDLVLSFGYLDDLKKL 187
Score = 108 (43.1 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
+RG+D NV+ V+ D TS+ ++HR+GRTARAG+ G+ S
Sbjct: 366 SRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Score = 63 (27.2 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481
+T+ F N +D Y + L+ GI C + +L + R + F + + + TD
Sbjct: 264 KTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Score = 47 (21.6 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 312 SDEGNFEGDSDVEGLTEETKS-GSIKKKDWRRVRKNYQRSKQY 353
++E N E D + +G E+TK G+ + K + + +++ K+Y
Sbjct: 322 TNELNEEQDDNEDG-DEDTKDKGNAETKPKKSKKSKFKQDKEY 363
Score = 41 (19.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 301 QDEENLQDEYISDEGNFEGD---SDVEGLTEETKSGSIKKKDWRRVR--KNYQ---RSKQ 352
QD+ DE D+GN E S ++ + G + D+R V N+ SK
Sbjct: 329 QDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKA 388
Query: 353 YIFVAATLPINGKKTAGAVLKQMFP 377
YI GK AG L + P
Sbjct: 389 YIHRIGRTARAGK--AGMALSFVLP 411
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 202 (76.2 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 55/198 (27%), Positives = 100/198 (50%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGS 132
S+ + + DD TW S L RL++A++ GF P+++Q++++ L K D++ A TGS
Sbjct: 4 SASSSYLDDETTWDSFNLDPRLLQAIDQLGFSNPTLIQSSAIPLALEEKRDIIAKASTGS 63
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS-- 190
GKT +Y +P++ L T DS S++L P L QV + L
Sbjct: 64 GKTAAYCIPIVNNLLT--DDSAQG----------IKSIILVPTRELSNQVFQFVEKLLTF 111
Query: 191 ADNGEPLVRAVAVCGGQ---GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ N ++ + Q + KP++I+STPA L+ ++ K + ++ + VK +
Sbjct: 112 STNKINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILE-KNEKNID-LSTVKNLTI 169
Query: 248 DEADMLLCGSFQNQVIRL 265
DE D++L + + + +L
Sbjct: 170 DEVDLVLSFGYLDDLKKL 187
Score = 108 (43.1 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
+RG+D NV+ V+ D TS+ ++HR+GRTARAG+ G+ S
Sbjct: 366 SRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Score = 63 (27.2 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481
+T+ F N +D Y + L+ GI C + +L + R + F + + + TD
Sbjct: 264 KTIAFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATD 320
Score = 47 (21.6 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 312 SDEGNFEGDSDVEGLTEETKS-GSIKKKDWRRVRKNYQRSKQY 353
++E N E D + +G E+TK G+ + K + + +++ K+Y
Sbjct: 322 TNELNEEQDDNEDG-DEDTKDKGNAETKPKKSKKSKFKQDKEY 363
Score = 41 (19.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 301 QDEENLQDEYISDEGNFEGD---SDVEGLTEETKSGSIKKKDWRRVR--KNYQ---RSKQ 352
QD+ DE D+GN E S ++ + G + D+R V N+ SK
Sbjct: 329 QDDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKA 388
Query: 353 YIFVAATLPINGKKTAGAVLKQMFP 377
YI GK AG L + P
Sbjct: 389 YIHRIGRTARAGK--AGMALSFVLP 411
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 174 (66.3 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 287 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKG 346
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
+D P + HV+ D +++HR+GRT R+G+ G+ T+
Sbjct: 347 LDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATT 385
Score = 158 (60.7 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 50/218 (22%), Positives = 101/218 (46%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ + +++ L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 38 SFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPII- 96
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ----VVRMANALSADNGEPLVRA 200
C L + K P L++CP+V + + ++ L D G P +R
Sbjct: 97 MFC--LEQEKRLPFCKREGPY---GLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRC 151
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
GG V ++TP L++ ++ K+ ++ R Y+ DEAD ++ F+
Sbjct: 152 ALCIGGMSVKEQMEVVKLATPGRLMDLLN-KKMVSLDICR---YLALDEADRMIDMGFEE 207
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ + + F+ ++Q + + +K S+L +P
Sbjct: 208 DIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 244
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 181 (68.8 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 58/199 (29%), Positives = 90/199 (45%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT + K A +Q+ +S N + N ++E V ++ AL
Sbjct: 194 RQTVMCSATFSDDLKLKA----QQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+ +K+ + + +VF + ++TK L AGI H D S ER L F
Sbjct: 250 VALLKQH-----QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEF 304
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ V + TD ARGI I + VI + A ++HRVGRTARAGQ+G+ SL
Sbjct: 305 KNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCH 364
Query: 530 SNRDLVDTIRRAAKLGQPV 548
D ++ R + PV
Sbjct: 365 GEMDALNATRTLTQRELPV 383
Score = 124 (48.7 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SL LS LI+AL + PS +Q + +L+GKDV A TGSGKT +Y +PL+
Sbjct: 23 MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
Query: 144 EKLCTA 149
E+L T+
Sbjct: 82 ERLKTS 87
Score = 63 (27.2 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDV 216
T P +LVL P L QV + + G + + +CGG Q P++
Sbjct: 86 TSPEQQALVLVPTRELAMQVSEVLTHVGTALG---LNTLCLCGGVDKTEQQNALAENPNI 142
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+V+T L + R + V +V DEAD LL F QV
Sbjct: 143 LVATTGRLFDLTQSGLR-----LNRVTTLVLDEADRLLDMGFWPQV 183
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 181 (68.8 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 58/199 (29%), Positives = 90/199 (45%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT + K A +Q+ +S N + N ++E V ++ AL
Sbjct: 194 RQTVMCSATFSDDLKLKA----QQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQAL 249
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+ +K+ + + +VF + ++TK L AGI H D S ER L F
Sbjct: 250 VALLKQH-----QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEF 304
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ V + TD ARGI I + VI + A ++HRVGRTARAGQ+G+ SL
Sbjct: 305 KNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCH 364
Query: 530 SNRDLVDTIRRAAKLGQPV 548
D ++ R + PV
Sbjct: 365 GEMDALNATRTLTQRELPV 383
Score = 124 (48.7 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SL LS LI+AL + PS +Q + +L+GKDV A TGSGKT +Y +PL+
Sbjct: 23 MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81
Query: 144 EKLCTA 149
E+L T+
Sbjct: 82 ERLKTS 87
Score = 63 (27.2 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDV 216
T P +LVL P L QV + + G + + +CGG Q P++
Sbjct: 86 TSPEQQALVLVPTRELAMQVSEVLTHVGTALG---LNTLCLCGGVDKTEQQNALAENPNI 142
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+V+T L + R + V +V DEAD LL F QV
Sbjct: 143 LVATTGRLFDLTQSGLR-----LNRVTTLVLDEADRLLDMGFWPQV 183
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 175 (66.7 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 52/188 (27%), Positives = 99/188 (52%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
NVT++ L + + ++ +++ G+ +P+ +Q + KD++ +ETGSGKT +++P+
Sbjct: 155 NVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPI 214
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVR 199
++ L N S +LV+ P LC Q+ + AL + N +
Sbjct: 215 LQDL------KVNKQSFY--------ALVISPTRELCIQISQNFQALGMNLLINICTIYG 260
Query: 200 AVAVCGGQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
V + Q + K P+VIVSTP +L++++ + + + +KY+VFDEAD LL F
Sbjct: 261 GVDIVT-QSLNLAKKPNVIVSTPGRILDHLNNTKGFNL---KNLKYLVFDEADKLLSQDF 316
Query: 259 QNQVIRLI 266
++ + +L+
Sbjct: 317 ESSINKLL 324
Score = 159 (61.0 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 420 FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFV 478
F +T ++F NT + + G++ C H L+ +R +L +F+ K + +
Sbjct: 391 FHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILI 450
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
T ARG+D+ ++ VI D S +++HRVGRTARAG+ G + T+
Sbjct: 451 STQVGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQ 500
Score = 53 (23.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 21/105 (20%), Positives = 39/105 (37%)
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNE 281
A +L N D K + Y VF+ ++ I+ + +KQ+ +
Sbjct: 9 ATILENFDKKLNKN--------YKVFNNEEIKKMDEEYEHKIKKKEQLKLQKKQIKKQEH 60
Query: 282 SGVEKPLEMD-NSSLTQPDLQDEENL---QDEYISDEGNFEGDSD 322
+K + N Q + + +N D I+ GN+ +SD
Sbjct: 61 KNEKKKKNKNLNKKHNQNNTNNSDNSFHNSDNNINQNGNYTNNSD 105
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 175 (66.7 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 52/188 (27%), Positives = 99/188 (52%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
NVT++ L + + ++ +++ G+ +P+ +Q + KD++ +ETGSGKT +++P+
Sbjct: 155 NVTFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPI 214
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVR 199
++ L N S +LV+ P LC Q+ + AL + N +
Sbjct: 215 LQDL------KVNKQSFY--------ALVISPTRELCIQISQNFQALGMNLLINICTIYG 260
Query: 200 AVAVCGGQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
V + Q + K P+VIVSTP +L++++ + + + +KY+VFDEAD LL F
Sbjct: 261 GVDIVT-QSLNLAKKPNVIVSTPGRILDHLNNTKGFNL---KNLKYLVFDEADKLLSQDF 316
Query: 259 QNQVIRLI 266
++ + +L+
Sbjct: 317 ESSINKLL 324
Score = 159 (61.0 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 420 FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFV 478
F +T ++F NT + + G++ C H L+ +R +L +F+ K + +
Sbjct: 391 FHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILI 450
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
T ARG+D+ ++ VI D S +++HRVGRTARAG+ G + T+
Sbjct: 451 STQVGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQ 500
Score = 53 (23.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 21/105 (20%), Positives = 39/105 (37%)
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNE 281
A +L N D K + Y VF+ ++ I+ + +KQ+ +
Sbjct: 9 ATILENFDKKLNKN--------YKVFNNEEIKKMDEEYEHKIKKKEQLKLQKKQIKKQEH 60
Query: 282 SGVEKPLEMD-NSSLTQPDLQDEENL---QDEYISDEGNFEGDSD 322
+K + N Q + + +N D I+ GN+ +SD
Sbjct: 61 KNEKKKKNKNLNKKHNQNNTNNSDNSFHNSDNNINQNGNYTNNSD 105
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 188 (71.2 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 53/161 (32%), Positives = 81/161 (50%)
Query: 392 PRLKEK-----WIEVTVDT--QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
P KEK W+ + D +++ L+ +K+ G E RT+VFAN + V ++ L
Sbjct: 223 PSRKEKAVIHQWLHLADDANHKLNLLVNTLKQE---GVE--RTVVFANKRETVQYLSGKL 277
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFAT 502
+ C + ++R K + F+ KG V V TD AARG+DI ++SHVI D
Sbjct: 278 YAEELPCVWLEGKMPQDKRNKAIERFK-KGEVKVLVATDVAARGLDIDDISHVINFDMPR 336
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
++HR+GRT RAG+ G SL + ++ I R K
Sbjct: 337 KVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGKIERYTK 377
Score = 140 (54.3 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 52/212 (24%), Positives = 101/212 (47%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++ ++ L L+ ++ G+ +P+ +Q + + GKDV+ +A TG+GKT ++L+P+
Sbjct: 12 SLMFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPI 71
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ L D + +P PR L+L P L Q+ + L+ ++
Sbjct: 72 AQHLL----DYPRT----KPGFPRV--LILTPTRELAIQIGEDSEQLTELTK---IKTGV 118
Query: 203 VCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLC 255
+ GG + D++V+TP LL I+ + +F R ++ +V DEAD +L
Sbjct: 119 ITGGVNYGSHADILTSTTDILVATPGRLLEYIENE-----QFDAREIEILVLDEADRMLD 173
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKP 287
F + R++ R+ KQ + + + +E P
Sbjct: 174 LGFSETINRIVAEARW-RKQ-TMLFSATLESP 203
Score = 39 (18.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
+ F D + L+ +N+ G KP + + Q
Sbjct: 14 MFEQFDLDSELLASINKIGYTKPTSIQELVIPQ 46
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 167 (63.8 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.8e-22, Sum P(2) = 8.8e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 167 (63.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 167 (63.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 167 (63.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 167 (63.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 167 (63.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 167 (63.8 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 47/153 (30%), Positives = 68/153 (44%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P +++ ++EV + D L RL +VF T V +++ L G
Sbjct: 213 PNIQQFYLEVQEKKKFDVLT-----RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAA 267
Query: 452 YCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL+ +R L F+E V V TD AARG+DI V+HV D ++HR
Sbjct: 268 EGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHR 327
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+GRT RAG+ G+ T + I R K
Sbjct: 328 IGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Score = 166 (63.5 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 50/170 (29%), Positives = 90/170 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLSD L++++E+ GF + +QA ++ L GKD++ A+TG+GKT ++ +PL++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T + S P R ++ + + + R+ L G+ + R +
Sbjct: 63 KVDT----HKESVQGIVIAPTRELAIQVGEELYKIGKHKRV-RILPIYGGQDINRQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +IV TP +L++I+ K R ++ V+ VV DEAD +L
Sbjct: 118 KKH------PHIIVGTPGRILDHINRKTLR----LQNVETVVLDEADEML 157
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 194 (73.4 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 62/200 (31%), Positives = 102/200 (51%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
+SD++ + + LS ++A++++GF ++VQ A++ +L GKDV+ A+TG+G
Sbjct: 374 TSDSYLS--KTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTG 431
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
KT ++L+P IE + + S +S PP LV+CP L Q AN L +
Sbjct: 432 KTVAFLLPAIEAVIKSPPASRDSRQ-----PPIIV-LVVCPTRELASQAAAEANTLLKYH 485
Query: 194 GEPLVRAVAVCGGQGWPIGK------P-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
P + V GG P + P ++V+TP L ++I+ + GVK +V
Sbjct: 486 --PSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLM-GVKVLV 542
Query: 247 FDEADMLLCGSFQNQVIRLI 266
DEAD LL F+ + R+I
Sbjct: 543 LDEADHLLDMGFRRDIERII 562
Score = 143 (55.4 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 40/186 (21%), Positives = 81/186 (43%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D R+ + +Q +AT+P ++ LK+ + + H ++ +
Sbjct: 555 RRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQ-KVTQ 613
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++ ++D L +KE + + + ++F T V +L + H
Sbjct: 614 MYMIASLDRHFSLLHVLLKEHIADNVDY-KVIIFCTTAMVTRLVADLLSQLSLNVREIHS 672
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
R + F++ K + V +D +ARG+D P+VS V+Q + ++HR+GRT
Sbjct: 673 RKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTG 732
Query: 516 RAGQYG 521
R G+ G
Sbjct: 733 RKGKEG 738
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 199 (75.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 47/143 (32%), Positives = 77/143 (53%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N R+K+ +EV + + + + R + G + + F V ++L+T G +
Sbjct: 292 NSRIKQV-VEVVKPHEKEQRLVQILNRHQRGTP-DKVLAFCLYKKEAMRVERLLRTKGFK 349
Query: 451 CYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
H DLS +ER ++L F+ V V TD AARG+DIP+V V+ F + D++H
Sbjct: 350 VAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVH 409
Query: 510 RVGRTARAGQYGLVTSLYTESNR 532
R+GRT RAG G +L+TE+++
Sbjct: 410 RIGRTGRAGADGHAITLFTETDK 432
Score = 129 (50.5 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 47/179 (26%), Positives = 86/179 (48%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
GF P+ +Q+A+ + +G+DV+ AETGSGKT ++ +P ++K+ D + P
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVL----DLKTKQKSCRP 147
Query: 163 TPPR-APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDV 216
+P+ L + +Q+V+ A + ++ + GG Q + V
Sbjct: 148 LAVVISPTRELAMQIY--DQLVKFAEKVD-------IQVACIFGGVKKDEQREALKSAAV 198
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQ 275
+V+TP L D + ++ R VKY+V DEAD +L F+ + +I+ ++Q
Sbjct: 199 VVATPGRLK---DLQNDGSLDLGR-VKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQ 253
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 171 (65.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCT 480
+ +++++F N+ V + K + G CY H ++ R + +F++ G VC+
Sbjct: 279 QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQ-GNCRNLVCS 337
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D RGIDI V+ VI DF +A +LHR+GR+ R G G+ +L T +R T+RR
Sbjct: 338 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH---TLRR 394
Score = 157 (60.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 57/194 (29%), Positives = 96/194 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V ++ L L+ + G+ +PS +Q AS+G L+G+D++ A+ G+GKT +Y +P+I
Sbjct: 43 VEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 102
Query: 144 EKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
EK+ AL + PT A + +C + Q+ M D + ++R
Sbjct: 103 EKIQPALKAIQAMVI--VPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN- 159
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G ++++TP +L+ ++ K +ME K +V DEAD LL FQ +
Sbjct: 160 ---------GTVHLVIATPGRILDLME-KGVAKMEHC---KTLVLDEADKLLSQDFQGIL 206
Query: 263 IRLINMFRFDEKQL 276
RLIN F E+Q+
Sbjct: 207 DRLIN-FLPKERQV 219
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 171 (65.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCT 480
+ +++++F N+ V + K + G CY H ++ R + +F++ G VC+
Sbjct: 279 QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQ-GNCRNLVCS 337
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D RGIDI V+ VI DF +A +LHR+GR+ R G G+ +L T +R T+RR
Sbjct: 338 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH---TLRR 394
Score = 157 (60.3 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 57/194 (29%), Positives = 96/194 (49%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V ++ L L+ + G+ +PS +Q AS+G L+G+D++ A+ G+GKT +Y +P+I
Sbjct: 43 VEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVI 102
Query: 144 EKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
EK+ AL + PT A + +C + Q+ M D + ++R
Sbjct: 103 EKIQPALKAIQAMVI--VPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN- 159
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G ++++TP +L+ ++ K +ME K +V DEAD LL FQ +
Sbjct: 160 ---------GTVHLVIATPGRILDLME-KGVAKMEHC---KTLVLDEADKLLSQDFQGIL 206
Query: 263 IRLINMFRFDEKQL 276
RLIN F E+Q+
Sbjct: 207 DRLIN-FLPKERQV 219
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 168 (64.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 42/119 (35%), Positives = 64/119 (53%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
R +VF + + + I+ G+ H L+ E+R ++ F+ + V +CTD A+
Sbjct: 481 RIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLAS 540
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DIP + VI D S +LHRVGRTARAG+ G + ES++D +R A K
Sbjct: 541 RGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR-SIVRAAIK 598
Score = 168 (64.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 55/197 (27%), Positives = 99/197 (50%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SL LS +++ L + G+ +PS +Q+A++ L GKD++ A TGSGKT ++++P+IE+
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L K +VL P L QV + + A + +AV G
Sbjct: 293 LLY-----------KPAKIASTRVIVLLPTRELAIQVADVGKQI-ARFVSGITFGLAVGG 340
Query: 206 ----GQGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSFQ 259
Q + +PD++++TP +++I R F V V+ +V DEAD +L FQ
Sbjct: 341 LNLRQQEQMLKSRPDIVIATPGRFIDHI----RNSASFNVDSVEILVMDEADRMLEEGFQ 396
Query: 260 NQVIRLINMFRFDEKQL 276
+++ ++ + + + L
Sbjct: 397 DELNEIMGLLPSNRQNL 413
Score = 55 (24.4 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 279 MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332
MN +G E E + + + ++EE Q+E ++G + + D E +EE K+
Sbjct: 161 MN-NGDENQSEEEEEEEEKEEEEEEEEEQEEMTLEKGGKDDEIDEEDDSEEAKA 213
Score = 52 (23.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/73 (27%), Positives = 28/73 (38%)
Query: 265 LINMFRFDEKQLSRMNESGVEKP-------LEMDNSSLTQPDLQDEENLQDEYISDEGNF 317
L+ M D KQ + VEK L MD + P +EN +E +E
Sbjct: 120 LVKMAHIDSKQEEETEKEKVEKENDSDDEELAMDGFGMGAPMNNGDENQSEEEEEEEEKE 179
Query: 318 EGDSDVEGLTEET 330
E + + E E T
Sbjct: 180 EEEEEEEEQEEMT 192
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 189 (71.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 59/188 (31%), Positives = 99/188 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ S GLS ++ ++ GF +P+ +Q ++ +L +D+V A TGSGKT ++++P++E
Sbjct: 138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
KL S+S K A +++L P+ L Q + + G L R+V +
Sbjct: 198 KL--------KSHSGKIG----ARAVILSPSRELAMQTFNVFKDFA--RGTEL-RSVLLT 242
Query: 205 GGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G + PDVI++TP L+ K ++ ++ V+YVVFDEAD L F
Sbjct: 243 GGDSLEEQFGMMMTNPDVIIATPGRFLHL---KVEMNLD-LKSVEYVVFDEADRLFEMGF 298
Query: 259 QNQVIRLI 266
Q Q+ L+
Sbjct: 299 QEQLNELL 306
Score = 155 (59.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 427 TMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAA 484
T++F T V ++++L+ G + Y Y L R + L NF+ + V TD AA
Sbjct: 435 TILFVPTRHHVEYISQLLRDCGYLISYIYGT-LDQHARKRQLYNFRAGLTSILVVTDVAA 493
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
RG+DIP +++VI S+ F+HRVGRTARAG G S+ E+
Sbjct: 494 RGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAEN 539
Score = 46 (21.3 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 26/129 (20%), Positives = 57/129 (44%)
Query: 273 EKQLSRMNESGVEKP-LEMDNSS-LTQPDLQDEENLQDEYI-SDEGNFEGDSDVEGLTEE 329
++ L +++G E+ + D ++ + D + + N D + +D G + +E ++E
Sbjct: 8 KRDLEDQDDNGSEEDDIAFDIANEIALNDSESDANDSDSEVEADYGPNDVQDVIEYSSDE 67
Query: 330 TKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF 389
+ + KKK + K + SK+ I L ++ + + Q D D ++ Y
Sbjct: 68 EEGVNNKKKAENKDIKKKKNSKKEIAAFPMLEMSDDENNASGKTQTGDDEDDVN-EYFST 126
Query: 390 HN-PRLKEK 397
+N + K K
Sbjct: 127 NNLEKTKHK 135
Score = 38 (18.4 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 276 LSRMN-ESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE------GNFEGDSDVEGLTE 328
L R++ E+ V + LEM L+ + E NL YI E E ++
Sbjct: 339 LVRLDAETKVSENLEM--LFLSSKNADREANLL--YILQEIIKIPLATSEQLQKLQNSNN 394
Query: 329 ETKSGSIKKKDWRRVRKNYQRSK 351
E S S + D ++ R+N+++ K
Sbjct: 395 EADSDSDDENDRQKKRRNFKKEK 417
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 172 (65.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 57/175 (32%), Positives = 89/175 (50%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++SLGLS+ LI+ + G RP+ VQ + +L G+D + A+TGSGKT ++++P+++
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
KL SE+ P LVL P L Q+ L G L + V
Sbjct: 63 KL------SED--------PYGVFCLVLTPTRELAYQIAEQFRVLGKPLG--LKDCIIVG 106
Query: 205 G----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G QG + K P V+V+TP L ++I R + +++++ DEAD LL
Sbjct: 107 GMDMVTQGLELSKKPHVVVATPGRLADHI---RSSDTINLNRIQFLIMDEADRLL 158
Score = 157 (60.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
L +++I +T + DA + + + + + ++F NT + +T +L+
Sbjct: 219 LDQRFI-LTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTIS 277
Query: 454 YHKDLSLEERAKTLVNFQEKGGVF---VCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H + +R L F K VF + TD AARG+DIP V VI + ++HR
Sbjct: 278 LHSMMKQRQRFANLAKF--KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHR 335
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTI 538
VGRTARAG+ G+ +L T+ + L++ I
Sbjct: 336 VGRTARAGRNGVSITLVTQYDIHLINAI 363
Score = 42 (19.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR-MNESGV-EKPLEMDNSSLTQP 298
GV + + D+ L + + Q + F +EK++ + + + V + E+ S T
Sbjct: 346 GVSITLVTQYDIHLINAIEEQNQTKLKEFPIEEKEVLKILTQVNVTRRQCEIKLES-TDF 404
Query: 299 DLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
D + + N + + I D G D D+E + + I+ K+ + KN Q K+
Sbjct: 405 DEKKKINKRKQMILD-GK---DPDLEE-KRKNELEKIRGKNKKLKGKNPQSKKE 453
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 182 (69.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 58/198 (29%), Positives = 93/198 (46%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P ++ AG LK + + GN + +++ ++V ++ D L
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLKTDY--IFLVIGNTCGACSD-VQQNILQVPRLSKRDKL 410
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
IE ++ G E RTMVF +T + L + H D ER L +F
Sbjct: 411 IEILQST---GGE--RTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDF 465
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K + V T A+RG+DI NV HVI D + D++HR+GRT R G G S + +
Sbjct: 466 RSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDD 525
Query: 530 -SNRDLVDTIRRAAKLGQ 546
S+ LV ++ + Q
Sbjct: 526 QSDGHLVQSLLKVLSEAQ 543
Score = 149 (57.5 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 46/190 (24%), Positives = 99/190 (52%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ + L + + +G+ + + VQ S+ + +G+D++ A+TGSGKT ++L+P++
Sbjct: 167 LAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+++ + D +++ ++ P+ +++ P L Q+ A +R V +
Sbjct: 227 DRM---MKDGVTASAFQKQQEPQC--IIVAPTRELINQIFLEARKFVYGT---CIRPVVI 278
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP LL+ I+ + ++ V VKY+V DEAD +L
Sbjct: 279 YGGTQTGHSIRQIMQGCNILCATPGRLLDIIE---KGKISLVE-VKYLVLDEADRMLDMG 334
Query: 258 FQNQVIRLIN 267
F + +LI+
Sbjct: 335 FGLDMKKLIS 344
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 168 (64.2 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 40/124 (32%), Positives = 63/124 (50%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GV 476
++F +E S + VDA V+ L C H D+ +R K + F+ K +
Sbjct: 509 VKFLSEGSVLIFVTKKVDAE-TVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDI 567
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVD 536
V TD AARG+DIP++ +V+ D A HR+GRT RAG+ G +L T+ +++
Sbjct: 568 LVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAG 627
Query: 537 TIRR 540
+ R
Sbjct: 628 HLVR 631
Score = 168 (64.2 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 60/218 (27%), Positives = 103/218 (47%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++LI+A+ + + +P+ +QA +V LSG+D++ A+TGSGKT +++ P++ +
Sbjct: 275 GFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-- 332
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC--GG 206
K+ P P L+L P L Q+ A G+ V C GG
Sbjct: 333 --------DQKQLKPGDGPIGLILAPTRELSLQIYNEAKKF----GKVYNLNVVCCYGGG 380
Query: 207 QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
W K ++IV+TP +++ + K +R V ++V DEAD + F+ Q
Sbjct: 381 SKWEQSKALEQGAEIIVATPGRMIDMVKMKATN----LRRVTFLVLDEADRMFHMGFEPQ 436
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLE-MDNSSLTQP 298
V + N R D + L M + +K +E + L+ P
Sbjct: 437 VRSICNHVRPDRQCL--MFSATFKKRIERLARDVLSDP 472
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 171 (65.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 59/190 (31%), Positives = 94/190 (49%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+ T+ LGL ++ AL + G+ +PS +QA + +L+G+DV+ A+TGSGKT ++
Sbjct: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-NGEPLV 198
+PL++ L D E P+ LVL P L QV S G V
Sbjct: 62 LPLLQNL------------DPELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRG---V 104
Query: 199 RAVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
VA+ GGQ + + P ++V TP LL+++ +R ++ + + +V DEAD
Sbjct: 105 NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL---KRGTLDLSK-LSGLVLDEADE 160
Query: 253 LLCGSFQNQV 262
+L F V
Sbjct: 161 MLRMGFIEDV 170
Score = 162 (62.1 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 40/137 (29%), Positives = 66/137 (48%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ LE + ++F T +A V + L+ G + D++ R +TL +
Sbjct: 234 EALVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+ + + + TD AARG+D+ +S V+ D + ++HR+GRT RAG+ G
Sbjct: 293 DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENR 352
Query: 531 NRDLVDTIRRAAKLGQP 547
R L+ I R KL P
Sbjct: 353 ERRLLRNIERTMKLTIP 369
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 176 (67.0 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 60/186 (32%), Positives = 97/186 (52%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
LS+ +I AL+ SGF + VQA ++ + S KDVV+ A TGSGKT ++L+P IE +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII---- 78
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
SNS P P + +++ P L Q+ ++A + P V +V + GG+
Sbjct: 79 ---RRSNS-YPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTL--PNVNSVLLVGGREVE 132
Query: 211 IGK-------PDVIVSTPAALLNNIDPKRRRRMEFV--RGVKYVVFDEADMLLCGSFQNQ 261
++++ TP L + + +RMEF+ R ++ ++ DEAD LL FQ Q
Sbjct: 133 ADMNTLEEEGANLLIGTPGRLSDMM-----KRMEFLDFRNLEILILDEADRLLDMGFQKQ 187
Query: 262 VIRLIN 267
V +I+
Sbjct: 188 VNYIIS 193
Score = 155 (59.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
++KI I + H + + R L +F E GV +CTD AARG+DIP + +V+Q
Sbjct: 285 LSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQY 344
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
D F+HRVGRTAR + G D V+ +R
Sbjct: 345 DPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYVEFMR 385
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 200 (75.5 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 55/196 (28%), Positives = 104/196 (53%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S +++ AL+ G+ +P+ +Q+ ++ +++G+D++ A+TGSGKT ++L+P+
Sbjct: 372 TWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFR 431
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + + +E P A +++ P L Q+ + S G +R V V
Sbjct: 432 HIM-------DQRALEEGEGPIA--VIMTPTRELALQITKECKKFSKTLG---LRVVCVY 479
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 480 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANNGRVTNLRRVTYVVLDEADRMFDMGF 538
Query: 259 QNQVIRLINMFRFDEK 274
+ QV+R+++ R D +
Sbjct: 539 EPQVMRIVDNVRPDRQ 554
Score = 137 (53.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 50/211 (23%), Positives = 90/211 (42%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +L + P + G + + +++ I +
Sbjct: 544 RIVDNVRPDRQTVMFSATFPRAMEALARRILSK--PIEVQVGGRSVVCSD--VEQHVIVI 599
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
+ + L+E + E G+ ++F + + + K L A C H +
Sbjct: 600 EEENKFLKLLELLGHYQEKGS----VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY 655
Query: 462 ERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R + +F K G + V T AARG+D+ + V+ D++HR GRT RAG
Sbjct: 656 DRDSIINDF--KNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAG 713
Query: 519 QYGLVTSLYTESNRDLVDTIRRAAKL-GQPV 548
G + TE I +A +L G P+
Sbjct: 714 NKGFAYTFITEDQARYAGDIIKALELSGNPI 744
Score = 54 (24.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 266 INMFRFDEKQLSRMNESGVEKPLE-MDNS---SLTQPDLQDEENLQDEYISDEGNFEGDS 321
+ +R ++++ + N ++K +E M SL D DEE + E EGN D
Sbjct: 166 VEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGE---KEGNEVEDE 222
Query: 322 DVEGLT---EETKSGSIKKKDWRRVR 344
+++ L EE K +KK + R V+
Sbjct: 223 ELDPLDAYMEEVKE-EVKKFNMRSVK 247
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 181 (68.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 57/190 (30%), Positives = 91/190 (47%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P ++ AG LK + + GN + +++ ++V ++ D L
Sbjct: 354 RQTLMFSATFPEEVQRLAGEFLKTDY--IFLVIGNTCGACSD-VQQNILQVPRLSKRDKL 410
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
IE ++ G E RTMVF +T + L + H D ER L +F
Sbjct: 411 IEILQST---GGE--RTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDF 465
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K + V T A+RG+DI NV HVI D + D++HR+GRT R G G S + +
Sbjct: 466 RSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDD 525
Query: 530 -SNRDLVDTI 538
S+ LV ++
Sbjct: 526 QSDGHLVQSL 535
Score = 149 (57.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 46/190 (24%), Positives = 99/190 (52%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ + L + + +G+ + + VQ S+ + +G+D++ A+TGSGKT ++L+P++
Sbjct: 167 LAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIV 226
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+++ + D +++ ++ P+ +++ P L Q+ A +R V +
Sbjct: 227 DRM---MKDGVTASAFQKQQEPQC--IIVAPTRELINQIFLEARKFVYGT---CIRPVVI 278
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP LL+ I+ + ++ V VKY+V DEAD +L
Sbjct: 279 YGGTQTGHSIRQIMQGCNILCATPGRLLDIIE---KGKISLVE-VKYLVLDEADRMLDMG 334
Query: 258 FQNQVIRLIN 267
F + +LI+
Sbjct: 335 FGLDMKKLIS 344
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 189 (71.6 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 44/122 (36%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T ++ L C H D S ++R + L F+ + + V T A
Sbjct: 441 SLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVA 500
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS + E N +DL+D +
Sbjct: 501 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLV 560
Query: 540 RA 541
A
Sbjct: 561 EA 562
Score = 143 (55.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 54/193 (27%), Positives = 99/193 (51%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIE 144
+ + + + ++ +E + + RP+ VQ ++ P++ K D++ A+TGSGKT ++L+P++
Sbjct: 181 FSDIEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query: 145 KLCTALGDSENSNSDKEP----TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
++ T G E + KE + P SLVL P L Q+ A S + VR
Sbjct: 240 QIYTD-GPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VR 295
Query: 200 AVAVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG D+ +V+TP L++ ++ + + ++F KY+V DEAD +
Sbjct: 296 PCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMME-RGKIGLDFC---KYLVLDEADRM 351
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ R++
Sbjct: 352 LDMGFEPQIRRIV 364
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 187 (70.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 67/228 (29%), Positives = 112/228 (49%)
Query: 70 DKNGSSDTFFADDNVTWKSLGLSDRLIRAL-ENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
D + + FA + ++ SLGL +L L E GF P++VQA ++ +LSG+DV++ A
Sbjct: 17 DASKAKSGLFA--SCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNA 74
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
TG+GKT +YL PLI L +S K +LV+ P LC QV
Sbjct: 75 PTGTGKTIAYLAPLIHHL--------QGHSPKVDRSHGTFALVIVPTRELCLQVYETLEK 126
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFV-RG 241
L +V V GG+ K ++++TP LL+++ + FV +
Sbjct: 127 L-LHRFHWIVPGY-VMGGEKKAKEKARLRKGISILIATPGRLLDHL----KNTASFVHKN 180
Query: 242 VKYVVFDEADMLL---CGSFQNQVIRLINMFRFDEKQLSRMNESGVEK 286
+++V+FDEAD +L G Q+I+L+ + ++ + + G++K
Sbjct: 181 LRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQK 228
Score = 144 (55.7 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 449 IECYCY--HKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
++C + H + E+R F+ EK V + TD AARG+D P V +IQ D A
Sbjct: 372 LKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEAT 431
Query: 506 DFLHRVGRTARAGQYG 521
+++HRVGRTAR G+ G
Sbjct: 432 EYVHRVGRTARIGEKG 447
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 172 (65.6 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 54/207 (26%), Positives = 90/207 (43%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + +Q + +AT+P ++ A + + P+ + + P +++
Sbjct: 163 EDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNE--PELVKVKAKEMTV--PNIQQY 218
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++EV + D L L+ A +VF T V + + L G H D
Sbjct: 219 YLEVHEKKKFDILTRL----LDIQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGD 273
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
LS +R L F+E + V TD AARG+DI V+HV D ++HR+GRT R
Sbjct: 274 LSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGR 333
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG+ G+ + T + I R K
Sbjct: 334 AGKTGVAMTFVTPREIGQLHHIERTTK 360
Score = 156 (60.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGLS +++A+E GF + +QA ++ L KDV+ A+TG+GKT ++ +P++E
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ + +NS P + + V+ L G+ + R +
Sbjct: 63 KV-----NVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRAL 117
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
P VIV TP ++++I+ + R+E V V V DEAD +L F +
Sbjct: 118 KKH------PHVIVGTPGRIIDHIN-RGTLRLEHVHTV---VLDEADEMLNMGFIEDIEA 167
Query: 265 LIN 267
+++
Sbjct: 168 ILS 170
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 169 (64.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 49/155 (31%), Positives = 80/155 (51%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P L E+ + + + + EAV L S+ ++F+ T A + + + AG++
Sbjct: 382 PGLTEEVVRIRRTREANQ--EAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKA 439
Query: 452 YCYHKDLSLEERAKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H +L+ +R +L F+++ F + TD AARG+DI V VI ++HR
Sbjct: 440 AELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHR 499
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
VGRTARAG+ G + T+S+R L+ I A K+G
Sbjct: 500 VGRTARAGREGYAVTFVTDSDRSLLKVI--AKKVG 532
Score = 166 (63.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 61/226 (26%), Positives = 107/226 (47%)
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
+F AD T+ L LS L+RA E G+ +P+ +QAA + L+G+D+ +A TGSGKT
Sbjct: 163 SFHAD---TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTA 219
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
++ +P +E+L K R L+L P L Q+ M L+
Sbjct: 220 AFALPTLERLLFR---------PKRVFATRV--LILTPTRELAVQIHSMIQNLAQFTDIK 268
Query: 197 ---LVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADM 252
+V ++V + PD++V+TP +++++ R M + + ++ DEAD
Sbjct: 269 CGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHL----RNSMSVDLDDLAVLILDEADR 324
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
LL F ++ L+ + +Q + + E+ E+ SL +P
Sbjct: 325 LLQTGFATEITELVRLCP-KRRQTMLFSATMTEEVKELVKLSLNKP 369
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKD 339
+EE ++E D + E D E L+E+ ++ K +D
Sbjct: 112 NEEEEEEEEEEDASDAETDKQEEYLSEDDEAAEYKPED 149
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 21/80 (26%), Positives = 32/80 (40%)
Query: 273 EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332
EK L R +E EM + + + +DEE DE G G + +ET
Sbjct: 646 EKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEG--DE---KRGRSRGKDKKK---QETDK 697
Query: 333 GSIKKKDWRRVRKNYQRSKQ 352
+ KD +R ++KQ
Sbjct: 698 KGLTLKDLGYMRAKAVKAKQ 717
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 175 (66.7 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 43/120 (35%), Positives = 61/120 (50%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA++ L TS ++VF NT V V L +G H D+ ER + LV F
Sbjct: 232 EALETLLLHHQPTS-SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFA 290
Query: 472 EKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K + V TD AARG+D+ N+ V D + +HR+GRT RAG GL S ++++
Sbjct: 291 NKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDN 350
Score = 152 (58.6 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 65/253 (25%), Positives = 113/253 (44%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +L L L+ LE GF + +QA S+ +L G+DV+ +TGSGKT ++
Sbjct: 5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAF------ 58
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
LG N N + R +LVLCP L +QV L ++ + +C
Sbjct: 59 ----GLGVLSNLNVKRF----RVQALVLCPTRELADQVATDIRTLGRAIHN--IKVLTLC 108
Query: 205 GGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G IG + ++V TP +L+++ R E + +V DEAD +L F
Sbjct: 109 GGMPMGPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSE----LNTLVLDEADRMLEMGF 164
Query: 259 QNQVIRLINMFRFDEKQL--SRMNESGVEKPLEM--DNSSLTQPDL-QDEENLQDEYISD 313
Q + +I + + L S + +E+ + N+ + + + D +++ +
Sbjct: 165 QEALEAIIAAAPAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKV 224
Query: 314 EGNFEGDSDVEGL 326
EG+ D +E L
Sbjct: 225 EGSAARDEALETL 237
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 187 (70.9 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 45/154 (29%), Positives = 80/154 (51%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
++V D + D + + E + + ++T+VF T +T+ ++ G H D
Sbjct: 305 VDVCHDVEKDDKLIRLMEEI-MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDK 363
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 364 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 423
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T +N DL+ +R A + P
Sbjct: 424 TKTGTAYTFFTPNNIKQVNDLISVLREANQAINP 457
Score = 143 (55.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 51/188 (27%), Positives = 91/188 (48%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
++ ++ F P+ +QA LSG D+V A+TGSGKT SYL+P I + +
Sbjct: 93 VMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI------NH 146
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIG 212
++ P LVL P L +QV ++A S +++ + GG +G I
Sbjct: 147 QPFLERGDGPI---CLVLAPTRELAQQVQQVAAEYSR---ACRLKSTCIYGGAPKGPQIR 200
Query: 213 K----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++
Sbjct: 201 DLERGVEICIATPGRLIDFLEAGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQ 256
Query: 269 FRFDEKQL 276
R D + L
Sbjct: 257 IRPDRQTL 264
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 187 (70.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 45/154 (29%), Positives = 80/154 (51%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
++V D + D + + E + + ++T+VF T +T+ ++ G H D
Sbjct: 313 VDVCHDVEKDDKLIRLMEEI-MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDK 371
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 372 SQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARS 431
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T +N DL+ +R A + P
Sbjct: 432 TKTGTAYTFFTPNNIKQVNDLISVLREANQAINP 465
Score = 143 (55.4 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 51/188 (27%), Positives = 91/188 (48%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
++ ++ F P+ +QA LSG D+V A+TGSGKT SYL+P I + +
Sbjct: 101 VMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI------NH 154
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIG 212
++ P LVL P L +QV ++A S +++ + GG +G I
Sbjct: 155 QPFLERGDGPI---CLVLAPTRELAQQVQQVAAEYSR---ACRLKSTCIYGGAPKGPQIR 208
Query: 213 K----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++
Sbjct: 209 DLERGVEICIATPGRLIDFLEAGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQ 264
Query: 269 FRFDEKQL 276
R D + L
Sbjct: 265 IRPDRQTL 272
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 178 (67.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 59/190 (31%), Positives = 95/190 (50%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
N +++S+ LS ++R L + GF +P+ +Q+ ++ L GKDVV A TGSGKT +++VP+
Sbjct: 254 NASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPI 313
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+E+L K PT R ++L P L Q +A L++ AV
Sbjct: 314 LERLLY--------RPKKVPTS-RV--VILAPTRELAIQCHAVATKLASHTDIKFCLAV- 361
Query: 203 VCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG + +PDVI++TP ID R V V+ +V DEAD +L
Sbjct: 362 --GGLSLKVQESELRLRPDVIIATPGRF---IDHMRNSASFAVDTVEILVLDEADRMLED 416
Query: 257 SFQNQVIRLI 266
F +++ ++
Sbjct: 417 GFADELNEIL 426
Score = 156 (60.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 39/121 (32%), Positives = 61/121 (50%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
T R ++F + I G+ C H +S +R +++ F++ K + TD
Sbjct: 500 TERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDL 559
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
A+RG+DI V VI + S ++HRVGRTARAG+ G +L E +R +V +A
Sbjct: 560 ASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAG 619
Query: 543 K 543
K
Sbjct: 620 K 620
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 306 LQDEYISDEGNFEGDSDVEG---LTEET----KSGSIKKKDWRRVRK 345
+ D++I+ + E D VE + EE KS +I KK +R K
Sbjct: 10 INDDFITTISDNEADEFVEEEEVIQEEAPPKKKSKTIPKKKQKRSSK 56
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 188 (71.2 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 42/130 (32%), Positives = 69/130 (53%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ + + E + S T+VF T + L H D + +ER L +
Sbjct: 394 LMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRS 453
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + + V TD AARG+DIP+V+HV+ D D++HR+GRT RAG+ G+ T+ +
Sbjct: 454 FKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFN 513
Query: 529 ESNRDLVDTI 538
E+N L ++
Sbjct: 514 ENNAQLARSL 523
Score = 142 (55.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 53/193 (27%), Positives = 96/193 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + RP+ VQ ++ +L+ +D++ A+TGSGKT ++ P+I
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 145 KLCTALGDSENSNSDKEPTPPRA--P-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
G ++ + ++ P RA P +++L P L Q+ A S G V+ V
Sbjct: 212 ------GIMKDQHVER-PRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG---VKVV 261
Query: 202 AVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
GG PI + D++V+TP L N++ + R M+ +R ++ DEAD +
Sbjct: 262 VAYGGT--PIHQQLRELERGCDILVATPGRL-NDLLERARVSMQMIR---FLALDEADRM 315
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ +++
Sbjct: 316 LDMGFEPQIRKIV 328
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 177 (67.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 57/195 (29%), Positives = 90/195 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V +
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQTILQVGQYS 528
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 529 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 583
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 584 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 643
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 644 SFFDLESDSQLAQPL 658
Score = 156 (60.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 52/190 (27%), Positives = 96/190 (50%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ + G+D++ A+TGSGKT ++L+P++
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 350 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 401
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ +R VKY+V DEAD +L
Sbjct: 402 YGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIG----LRQVKYLVLDEADRMLDMG 457
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 458 FGPEMKKLIS 467
Score = 48 (22.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341
D + S G G +GL EE +GS K W+
Sbjct: 198 DTFQSRSGGGSGRGGYKGLNEEVITGS-GKNSWK 230
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 177 (67.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 57/195 (29%), Positives = 90/195 (46%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V +
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQTILQVGQYS 528
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 529 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 583
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 584 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 643
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 644 SFFDLESDSQLAQPL 658
Score = 156 (60.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 52/190 (27%), Positives = 96/190 (50%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ + G+D++ A+TGSGKT ++L+P++
Sbjct: 290 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPIL 349
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 350 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 401
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ +R VKY+V DEAD +L
Sbjct: 402 YGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIG----LRQVKYLVLDEADRMLDMG 457
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 458 FGPEMKKLIS 467
Score = 48 (22.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341
D + S G G +GL EE +GS K W+
Sbjct: 198 DTFQSRSGGGSGRGGYKGLNEEVITGS-GKNSWK 230
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 167 (63.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 52/189 (27%), Positives = 97/189 (51%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L + R++RA+ + G+ P+ +QAA++ +++G DVV A+TG+GKT ++ +P++
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ D P+A LVL P L QV A + + + +
Sbjct: 74 KI------------DITSKVPQA--LVLVPTRELALQVAEAFGRYGAYLSQ--LNVLPIY 117
Query: 205 GGQGWPI---GK---PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + + G V+V TP ++++++ R ++ R V ++V DEAD +L F
Sbjct: 118 GGSSYAVQLAGLRRGAQVVVGTPGRMIDHLE---RATLDLSR-VDFLVLDEADEMLTMGF 173
Query: 259 QNQVIRLIN 267
+ V R+++
Sbjct: 174 ADDVERILS 182
Score = 163 (62.4 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 53/206 (25%), Positives = 87/206 (42%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ KQ +AT+P +K + L F N + + +
Sbjct: 176 DVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVT--CKAKTAVAEN--ISQSY 231
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V ++DAL V E F A +VF T A + + L+ G D+
Sbjct: 232 IQVA--RKMDALTR-VLEVEPFEA----MIVFVRTKQATEEIAEKLRARGFSAAAISGDV 284
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+R +T+ ++ + V TD AARG+D+ +SHV+ D ++HR+GRT RA
Sbjct: 285 PQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRA 344
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G+ G + L+ I +A +
Sbjct: 345 GRSGAALIFVSPRELHLLKAIEKATR 370
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 191 (72.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 315
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 316 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 373
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 374 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 433
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 434 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Score = 139 (54.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 107 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 160
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 161 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 214 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 272 DEKQL 276
D + L
Sbjct: 270 DRQTL 274
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 191 (72.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 315
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 316 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 373
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 374 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 433
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 434 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Score = 139 (54.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 107 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 160
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 161 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 214 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 272 DEKQL 276
D + L
Sbjct: 270 DRQTL 274
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 191 (72.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 261 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 315
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 316 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 373
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 374 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 433
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 434 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Score = 139 (54.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 107 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 160
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 161 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 214 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 272 DEKQL 276
D + L
Sbjct: 270 DRQTL 274
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 178 (67.7 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 39/108 (36%), Positives = 55/108 (50%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
+VF T + L I H DL ER + L F+ + + V T AARG
Sbjct: 402 LVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARG 461
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
+DIPNV HVI D + +++HR+GRT R G G+ TS + + NR +
Sbjct: 462 LDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGI 509
Score = 153 (58.9 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 54/234 (23%), Positives = 107/234 (45%)
Query: 51 NQWKGRPFRGFXXXXXXXSDKNGSSDTF------FADDNVT-----WKSLGLSDRLIRAL 99
NQW G P +D + D + + D+V + G ++ +
Sbjct: 95 NQWGGAPAEYSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENV 154
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
SG+ +P+ VQ S+ +L+ +D++ A+TGSGKT ++L+P+I+ + D +
Sbjct: 155 NRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAF 214
Query: 160 KEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW--PIGK--- 213
P +LVL P L Q+ + A S + + A+ G + + + +
Sbjct: 215 TNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSN--IQTAILYGGRENYRDQVNRLRA 272
Query: 214 -PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
++++TP L++ I+ + + G +Y+V DEAD +L F+ Q+ +++
Sbjct: 273 GTHILIATPGRLIDIIE----QGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIV 322
Score = 43 (20.2 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
G+ + ++ + + G I N F + +N SG KP + S+
Sbjct: 116 GINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSI 170
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 174 (66.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 42/113 (37%), Positives = 60/113 (53%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T DA + K L GI H + + R + L F K V V T+ AA
Sbjct: 246 QVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT-ESNRDLVD 536
RG+DIP++ +V+ D A D++HR+GRT RAG+ G+ S + E R L D
Sbjct: 306 RGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLAD 358
Score = 151 (58.2 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 62/268 (23%), Positives = 124/268 (46%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S ++RA+ + G+ + + +Q ++ + G+DV+ +A+TG+GKT ++ +P+++K
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ ++ SN+ R L+L P L QV A S + + G
Sbjct: 63 MVENPSETLKSNT-------RV--LILTPTRELAAQVAENVEAYSKYLN---FSVLTIYG 110
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + D+IV+TP LL ++ + V ++V DEAD +L F
Sbjct: 111 GVKVETQAQKLKRGADIIVATPGRLLEHLTACNLS----LSSVDFLVLDEADRMLDMGFS 166
Query: 260 NQVIRLINMFRFDEKQL--SRMNESGVEKPLEMDNSSLTQPDL--QDEENLQDEYISDEG 315
+ +++ + L S S V+K + N + +P + D++N + +S +
Sbjct: 167 ADIQKILQAVNKKRQNLLFSATFSSAVKK---LANEMMIKPQVISADKQNTTADTVS-QV 222
Query: 316 NFEGDSDVEGLTEETKSGSIKKKDWRRV 343
+ + + E S I KK+W++V
Sbjct: 223 VYPVE---QRRKRELLSELIGKKNWQQV 247
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 178 (67.7 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 51/183 (27%), Positives = 100/183 (54%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ L LS L++A++ GF +P+ +QA ++ L+GKD++ +A TGSGKT ++L+P++E
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L DSE P + C +V+ E + + +N S L+
Sbjct: 251 RLL--FRDSEYRAIRVLILLPTRELALQCQSVM--ENLAQFSNITSC-----LIVGGLSN 301
Query: 205 GGQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
Q + K PDV+++TP L++++ ++ ++ ++ DEAD LL F++++
Sbjct: 302 KAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLD---DLEILILDEADRLLDMGFKDEIN 358
Query: 264 RLI 266
+++
Sbjct: 359 KIV 361
Score = 155 (59.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 39/118 (33%), Positives = 67/118 (56%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAA 484
T++F + V+ + I + ++ H +LS E+R +L F++ G V + +D A+
Sbjct: 439 TIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRD-GQVNYLLASDVAS 497
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV-DTIRRA 541
RG+DI V VI + + +++HRVGRTARAG G S T+++R L+ D + +A
Sbjct: 498 RGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKA 555
Score = 41 (19.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 24/120 (20%), Positives = 52/120 (43%)
Query: 278 RMNESGVEKPLEMDN--SSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335
++N+ K L+ D+ S T+ ++ + +D+ + E + + E EE + +
Sbjct: 91 KINQRKTVKKLKADDDKSVTTKTTNNNKSKKSNNNDNDDDDEEVNEEEEEEEEEEDNENE 150
Query: 336 KKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395
K+ + ++ ++ Q +KQ L N K ++++ P + LH P LK
Sbjct: 151 KEINKKQQQQQQQSNKQTTDKIKVLQSNRKLKK--IVEEELPTFE-----ELHLSRPLLK 203
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 300 LQDEENLQDEYISDEGNFEGDSD 322
+ D+EN DE + ++ FE +SD
Sbjct: 38 VDDDENDDDEDLKEDFFFE-ESD 59
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 195 (73.7 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 44/123 (35%), Positives = 67/123 (54%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ A +E G + + T+VF T ++ L G H D S +ER L +
Sbjct: 392 LLHAQRENGNQGKQ-ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRS 450
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + + V TD AARG+DIP+V+HV+ D D++HR+GRT RAG GL T+ +
Sbjct: 451 FKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN 510
Query: 529 ESN 531
++N
Sbjct: 511 DNN 513
Score = 134 (52.2 bits), Expect = 2.8e-21, Sum P(2) = 2.8e-21
Identities = 51/194 (26%), Positives = 98/194 (50%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLI 143
T+ + L + L ++ + +P+ VQ ++ P+L+ G+D++ A+TGSGKT ++ P+I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAI-PILAAGRDLMACAQTGSGKTAAFCFPII 205
Query: 144 EKLCTALGDSENSNSDKEPTPPRA--P-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
G ++ + ++ P R P +++L P L Q+ A S G V+
Sbjct: 206 S------GIMKDQHIER-PRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG---VKV 255
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V GG P+ + D++V+TP L N++ + R ++ VR ++ DEAD
Sbjct: 256 VVAYGGT--PVNQQIRELERGVDILVATPGRL-NDLLERGRVSLQMVR---FLALDEADR 309
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ +++
Sbjct: 310 MLDMGFEPQIRKIV 323
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 199 (75.1 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 53/189 (28%), Positives = 99/189 (52%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL D L+ +LE GF P+ VQ+A+V ++ G D VI + TGSGKT +YL+P++
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ S +S+S+ + ++++ P+ L Q+VR L +V+ +
Sbjct: 171 EIGPLAEKSRSSHSENDKRT-EIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLV-- 227
Query: 205 GG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + KP ++V TP + + + ++ G +++V DE D LL +
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIA---EISKGGKLH-THGCRFLVLDEVDELLSFN 283
Query: 258 FQNQVIRLI 266
F+ + R++
Sbjct: 284 FREDIHRIL 292
Score = 127 (49.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 43/157 (27%), Positives = 67/157 (42%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P LK + +VD L R + + F N + V L+ G+
Sbjct: 380 PALKHYYCISKHQHKVDTL-----RRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNS 434
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DL R+ L F+ + V V + +ARG+D+ V+ + T AV + HR
Sbjct: 435 AEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHR 494
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
GRT R G+ G V ++ ES +V + + +LG P
Sbjct: 495 AGRTGRLGRKGTVVTVCEESQVFIVKKMEK--QLGLP 529
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 175 (66.7 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Score = 154 (59.3 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 53/223 (23%), Positives = 102/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + L ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 182 SFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 240
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 241 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 295
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 296 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 351
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 352 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 393
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 191 (72.3 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 340 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 394
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 395 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 452
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 453 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 512
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 513 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 546
Score = 139 (54.0 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 186 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 239
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 240 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 292
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 293 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 348
Query: 272 DEKQL 276
D + L
Sbjct: 349 DRQTL 353
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 191 (72.3 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 340 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 394
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 395 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 452
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 453 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 512
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 513 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 546
Score = 139 (54.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 186 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 239
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 240 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 292
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 293 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 348
Query: 272 DEKQL 276
D + L
Sbjct: 349 DRQTL 353
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 191 (72.3 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 342 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 396
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 397 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 454
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 455 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 514
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 515 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 548
Score = 139 (54.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 188 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 241
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 242 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 294
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 295 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 350
Query: 272 DEKQL 276
D + L
Sbjct: 351 DRQTL 355
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 191 (72.3 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 57/214 (26%), Positives = 107/214 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWI 399
R++ + +Q + +AT P ++ A L+ D I+ GN N + + +
Sbjct: 342 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLR----DYTQINVGNLELSANHNILQI-V 396
Query: 400 EVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V ++++ D LI+ ++E + + ++T++F T +T+ ++ G C H D
Sbjct: 397 DVCMESEKDHKLIQLMEEIM--AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDK 454
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L F+ K + + TD A+RG+D+ +V VI D+ S+ D++HR+GRTAR+
Sbjct: 455 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 514
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L+ + A + P
Sbjct: 515 TNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 548
Score = 139 (54.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 51/185 (27%), Positives = 92/185 (49%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L + F P+ +Q LSG+D+V A+TGSGKT +YL+P I + +
Sbjct: 188 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI------NHQPYL 241
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG--QGWPIGK-- 213
++ P LVL P L +QV ++A+ D G+ +++ + GG +G I
Sbjct: 242 ERGDGPI---CLVLAPTRELAQQVQQVAD----DYGKCSRLKSTCIYGGAPKGPQIRDLE 294
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++ ++TP L++ ++ + +R Y+V DEAD +L F+ Q+ ++++ R
Sbjct: 295 RGVEICIATPGRLIDFLESGKTN----LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 350
Query: 272 DEKQL 276
D + L
Sbjct: 351 DRQTL 355
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 180 (68.4 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 64/221 (28%), Positives = 109/221 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++S+ LS +++ L N GF P+ +Q ++ L GKD+V AA TGSGKT +++VP++E
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L K PT R L+LCP L Q +A +++ V +C
Sbjct: 320 RLLY--------RPKKVPTT-RV--LILCPTRELAMQCHSVATKIASFTDI----MVCLC 364
Query: 205 -GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K PD++++TP ID R + V ++ +V DEAD +L
Sbjct: 365 IGGLSLKLQEQELRKRPDIVIATPGRF---IDHMRNSQGFTVENIEIMVMDEADRMLEDG 421
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F +++ +I +Q + + +K ++ SL +P
Sbjct: 422 FADELNEIIQACP-KSRQTMLFSATMTDKVDDLIRLSLNRP 461
Score = 151 (58.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 37/111 (33%), Positives = 59/111 (53%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
RT++F + + + I + H LS E+R + L +F++ K + TD A+
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
RGIDI + VI + + +LHRVGRTARAG+ G +L E +R ++
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVL 616
Score = 46 (21.3 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 284 VEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340
+ K D+ LT D +D+ + D+Y +D + E S+VE + K+ K D+
Sbjct: 38 IRKMKVQDDFILTIDDSEDDIHY-DDYDADAVDEEMPSNVELKKKSKKATPAKDSDF 93
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 168 (64.2 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 56/201 (27%), Positives = 89/201 (44%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ K +Q + AT P +K A +L P A GN + + IE
Sbjct: 326 RKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVN--P-AQVNIGNVDELVANKSITQHIE 382
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V + +E + E G S+ ++F +T +T+ L T H D S
Sbjct: 383 VVAPMEKQRRLEQILRSQEPG---SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQ 438
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L F+ + V V TD AARG+D+ ++ V+ DF D++HR+GRT RAG
Sbjct: 439 PERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGA 498
Query: 520 YGLVTSLY-TESNRDLVDTIR 539
G + + + ++ D I+
Sbjct: 499 TGQAFTFFGDQDSKHASDLIK 519
Score = 161 (61.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 58/191 (30%), Positives = 89/191 (46%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++++ G L+R + ++GF P+ +QA S + G+D+V A+TGSGKT YL+P
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L DS PT LVL P L Q+ A + R
Sbjct: 218 LHLQRIRNDSRMG-----PT-----ILVLSPTRELATQIQEEAVKFGRSS-----RISCT 262
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
C G P G D++V+TP L N+I RR + R + Y+V DEAD +L
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRL-NDILEMRRISL---RQISYLVLDEADRMLD 318
Query: 256 GSFQNQVIRLI 266
F+ Q+ +++
Sbjct: 319 MGFEPQIRKIV 329
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 172 (65.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 55/201 (27%), Positives = 104/201 (51%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+ + +K LGL +RL++ L + F + + +Q ++ ++G+D++ +++TGSGKT ++++
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ K +L S D PR L+L P L +QV L + G A
Sbjct: 62 PMLHK---SLKTKAFSAKD-----PRG--LILVPTRELAKQVY---GELRSMLGGLSYTA 108
Query: 201 VAVCGGQGW-----PIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG+ + + + P IV+TP L +++D R F+ G++ +V DEAD +L
Sbjct: 109 TLITGGENFNDQVKALARGPRFIVATPGRLADHLD----HRSLFLEGLETLVLDEADRML 164
Query: 255 CGSFQNQVIRLINMFRFDEKQ 275
F ++ R+ N + +Q
Sbjct: 165 DLGFAKELRRIHNAAKHRRRQ 185
Score = 152 (58.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ +R+ AE + ++F T +T+ L ++ +L+ +R + F+
Sbjct: 238 EALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFE 297
Query: 472 EKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ V TD A+RG+DIP V+HVI D +++HRVGRT RAG G SL
Sbjct: 298 RAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSL 353
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 172 (65.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 55/201 (27%), Positives = 104/201 (51%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+ + +K LGL +RL++ L + F + + +Q ++ ++G+D++ +++TGSGKT ++++
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ K +L S D PR L+L P L +QV L + G A
Sbjct: 62 PMLHK---SLKTKAFSAKD-----PRG--LILVPTRELAKQVY---GELRSMLGGLSYTA 108
Query: 201 VAVCGGQGW-----PIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG+ + + + P IV+TP L +++D R F+ G++ +V DEAD +L
Sbjct: 109 TLITGGENFNDQVKALARGPRFIVATPGRLADHLD----HRSLFLEGLETLVLDEADRML 164
Query: 255 CGSFQNQVIRLINMFRFDEKQ 275
F ++ R+ N + +Q
Sbjct: 165 DLGFAKELRRIHNAAKHRRRQ 185
Score = 152 (58.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ +R+ AE + ++F T +T+ L ++ +L+ +R + F+
Sbjct: 238 EALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFE 297
Query: 472 EKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ V TD A+RG+DIP V+HVI D +++HRVGRT RAG G SL
Sbjct: 298 RAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSL 353
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 203 (76.5 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 59/187 (31%), Positives = 99/187 (52%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ S GL +L+ LE +G+ P+ +Q ++ L+GK ++ +A+TGSGKT S+LVP+I
Sbjct: 110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ CT S+ + P ++VL P LC QV A L G P A+ V
Sbjct: 170 SR-CTTYHSEHPSDQRRNPL-----AMVLAPTRELCVQVEDQAKMLG--KGLPFKTALVV 221
Query: 204 CG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G GQ + I + ++I+ TP + +D + +E + + V DE D +L F
Sbjct: 222 GGDPMSGQLYRIQQGVELIIGTPGRV---VDLLSKHTIE-LDNIMTFVLDEVDCMLQRGF 277
Query: 259 QNQVIRL 265
++QV+++
Sbjct: 278 RDQVMQI 284
Score = 120 (47.3 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 43/195 (22%), Positives = 84/195 (43%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q + +AT+ +K G++ K++ +S + N + + I V + L
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEII----LVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF 347
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ ++ + F + + ++ V A I G++ H + ++ER + +F
Sbjct: 348 DILRSQNHF--KPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFL 405
Query: 472 EKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
GG V V T RG+D+ V VI D ++ +++H +GR +R G+ G
Sbjct: 406 --GGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 463
Query: 529 ESNRDLVDTIRRAAK 543
E +R+L + A K
Sbjct: 464 EDDRNLFPDLVAALK 478
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 171 (65.3 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 56/195 (28%), Positives = 89/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ A LK +F + G +++ ++V +
Sbjct: 452 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRD-----VQQTVLQVGQFS 506
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 507 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 561
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 562 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 621
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 622 SFFDLESDNHLAQPL 636
Score = 159 (61.0 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ +L+G+D++ A+TGSGKT ++L+P++
Sbjct: 268 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 328 AHM---MHDGITASRFKELQEPEC--IIVAPTRELVNQIYLEARKFSFGT---CVRAVVI 379
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ +KY+V DEAD +L
Sbjct: 380 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQIKYLVLDEADRMLDMG 435
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 436 FGPEMKKLIS 445
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 171 (65.3 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 56/195 (28%), Positives = 89/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ A LK +F + G +++ ++V +
Sbjct: 472 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRD-----VQQTVLQVGQFS 526
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 527 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 581
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 582 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 642 SFFDLESDNHLAQPL 656
Score = 159 (61.0 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ +L+G+D++ A+TGSGKT ++L+P++
Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 348 AHM---MHDGITASRFKELQEPEC--IIVAPTRELVNQIYLEARKFSFGT---CVRAVVI 399
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ +KY+V DEAD +L
Sbjct: 400 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQIKYLVLDEADRMLDMG 455
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 456 FGPEMKKLIS 465
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 171 (65.3 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 56/195 (28%), Positives = 89/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ A LK +F + G +++ ++V +
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRD-----VQQTVLQVGQFS 527
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 528 KREKLVEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 582
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 583 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 643 SFFDLESDNHLAQPL 657
Score = 159 (61.0 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ +L+G+D++ A+TGSGKT ++L+P++
Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 349 AHM---MHDGITASCFKELQEPEC--IIVAPTRELVNQIYLEARKFSFGT---CVRAVVI 400
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ +KY+V DEAD +L
Sbjct: 401 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQIKYLVLDEADRMLDMG 456
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 457 FGPEMKKLIS 466
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 165 (63.1 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 52/196 (26%), Positives = 92/196 (46%)
Query: 328 EETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL 387
E G ++ W + + ++ Q +AT+P +K A LK D + I +
Sbjct: 169 EMLNMGFLEDIQW--ILDHIPKTAQMCLFSATMPPAIRKIANRFLK----DPEHIKVAAV 222
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA 447
+ + +V+ T++ AL E + E +E+ A ++F T + + + L+ A
Sbjct: 223 KKAKANITQYAWKVSGITKMTAL-ERIAEVVEYDA----MIIFVRTRNDTVDIAEKLERA 277
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G + DL+ +R + + + K + V TD ARG+DIP +S VI D
Sbjct: 278 GYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEA 337
Query: 507 FLHRVGRTARAGQYGL 522
++HR+GRT RAG+ G+
Sbjct: 338 YVHRIGRTGRAGREGM 353
Score = 163 (62.4 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 56/195 (28%), Positives = 99/195 (50%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
++T + V + SLGL + L+ A+ + GF + +QA ++ P+L+GKDV+ A+TG+GK
Sbjct: 6 TETVTEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGK 65
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-N 193
T ++ +P + K+ T++ K+P +VL P L QV + D
Sbjct: 66 TAAFGLPALAKIDTSI---------KKPQ-----LMVLAPTRELAMQVAEAIESFGKDMK 111
Query: 194 GEPLVRAVAVCGGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
G +R + GGQ + P + V+V TP L++++ RR+ ++ ++ V
Sbjct: 112 G---LRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHL---RRKSLKLDE-LRVCVL 164
Query: 248 DEADMLLCGSFQNQV 262
DEAD +L F +
Sbjct: 165 DEADEMLNMGFLEDI 179
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 170 (64.9 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 64/261 (24%), Positives = 125/261 (47%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ + L + L+R + GF +PS +Q ++ P +GKDV+ A++G+GKT ++ V +++
Sbjct: 30 SFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQ 89
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVRAV 201
++ D E+ P +LV+ P L +Q+ ++ +AL N P +
Sbjct: 90 RI-----DHED---------PHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGT 135
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
+V Q V+V TP + + I+ R ++ R +K V DEAD +L F++Q
Sbjct: 136 SVRDDQRKLEAGIHVVVGTPGRVGDMIN---RNALDTSR-IKMFVLDEADEMLSRGFKDQ 191
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL----QDE---ENLQDEYIS-- 312
+ + D Q+ ++ + + L++ N + P +DE E ++ YI+
Sbjct: 192 IYEVFRSMPQDV-QVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQ 250
Query: 313 -DEGNFEGDSDVEGLTEETKS 332
DE F+ D+ + T++
Sbjct: 251 KDEWKFDCLCDLYNVVNVTQA 271
Score = 151 (58.2 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAA 483
++ ++F NT V +T+ + C H D+ ER + F+ V + TD
Sbjct: 269 TQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDIL 328
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
ARGID+ VS VI D ++ +++HR+GR+ R G+ G+ + TE++
Sbjct: 329 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEND 376
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 175 (66.7 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Score = 152 (58.6 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 240
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 241 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 295
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 296 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 351
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 352 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 393
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 175 (66.7 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Score = 152 (58.6 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 240
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 241 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 295
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 296 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 351
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 352 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 393
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 175 (66.7 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 436 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 495
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 496 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 539
Score = 152 (58.6 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 240
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 241 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 295
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 296 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 351
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 352 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 393
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 200 (75.5 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +R + L F+ + + V T A
Sbjct: 490 SLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVA 549
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DI NV HVI D + +++HR+GRT R G GL TS Y + N +DL+D +
Sbjct: 550 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILV 609
Query: 540 RA 541
A
Sbjct: 610 EA 611
Score = 127 (49.8 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 50/181 (27%), Positives = 92/181 (50%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
S + RP+ VQ ++ + + +D++ A+TGSGKT ++L+P++ ++ + G E + K
Sbjct: 241 SRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSE-GPGEALQATKA 299
Query: 162 PTPP---------RAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ--GW 209
T + P SLVL P L Q+ A + + VR V GG G
Sbjct: 300 STQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSR---VRPCVVYGGADIGQ 356
Query: 210 PIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
I + ++V+TP L++ ++ + + +++ KY+V DEAD +L F+ Q+ R+
Sbjct: 357 QIRDLERGCHLLVATPGRLVDMME-RGKIGLDYC---KYLVLDEADRMLDMGFEPQIRRI 412
Query: 266 I 266
+
Sbjct: 413 V 413
Score = 45 (20.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 292 NSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNY 347
+ ++TQ + EEN + ++ D N G + + ETK G+ +D+ R+ Y
Sbjct: 460 SENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFL-YREGY 514
Score = 40 (19.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 308 DEYISDEGNFE--GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGK 365
D S G +E G G S ++DW + +R + +F A+ IN +
Sbjct: 145 DRGASSRGRYERGGFGGGTGGNSRWVEESRDEEDWSKPMPPNERLEHELFSASNTGINFE 204
Query: 366 K 366
K
Sbjct: 205 K 205
>UNIPROTKB|F1SCG7 [details] [associations]
symbol:LOC100620190 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 OMA:DQQEERR GeneTree:ENSGT00550000074847 EMBL:CT990641
RefSeq:XP_003356831.1 UniGene:Ssc.51900 UniGene:Ssc.99043
Ensembl:ENSSSCT00000002742 GeneID:100157901 KEGG:ssc:100157901
Uniprot:F1SCG7
Length = 856
Score = 166 (63.5 bits), Expect = 6.0e-21, Sum P(3) = 6.0e-21
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
RT+VFAN++ + ++ +LK I H + ++R + L F + V + TD AA
Sbjct: 586 RTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAA 645
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVD 536
RG+DIP V HVI ++ ++HR GRTARA GL SL D+++
Sbjct: 646 RGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGL--SLMLVGPEDVIN 695
Score = 124 (48.7 bits), Expect = 6.0e-21, Sum P(3) = 6.0e-21
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLV 140
D WK L + ++RAL GF P+ +QA ++ P + K D++ AAETGSGKT ++ +
Sbjct: 189 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 248
Query: 141 PLI 143
P+I
Sbjct: 249 PMI 251
Score = 85 (35.0 bits), Expect = 6.0e-21, Sum P(3) = 6.0e-21
Identities = 33/130 (25%), Positives = 66/130 (50%)
Query: 152 DSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP---LVRAVAVCGGQG 208
+S+ + S+ P P LVL P L QV + +A++ G LV ++ Q
Sbjct: 371 NSKIATSEAHPKRPLL-GLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQR 429
Query: 209 WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQ--NQVIRL 265
+P+++++TP L + K+ + +R ++ +V DEAD M+ G F +Q++ +
Sbjct: 430 MLNRQPEIVIATPGRLWELVKEKQPH-LSNLRQLRCLVIDEADRMVEKGHFAELSQLLEM 488
Query: 266 INMFRFDEKQ 275
+N +++ K+
Sbjct: 489 LNDSQYNPKR 498
Score = 43 (20.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPL----EMDNSSLTQPDLQDEENLQDEY 310
CG FQ + I+++ ++ K M G L E+ + L P +N +
Sbjct: 15 CGKFQRKGIKVVGKWK-QVKIDPNMFADGQMDDLVCFEELTDYRLVSP----AKNSSSLF 69
Query: 311 ISDEGNF-EGDSDVEGLTEETKSGSIKKK 338
+ +E + + EG EE +S S KKK
Sbjct: 70 LKEESKKRKAQAVAEG-EEEGESSSSKKK 97
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 223 (83.6 bits), Expect = 6.1e-21, Sum P(3) = 6.1e-21
Identities = 74/243 (30%), Positives = 125/243 (51%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL RLIRAL G +P+++Q +++ +L GKDVV A+TGSGKT +YL+PL++
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-----NGEPLVR 199
KL +A DS + K+ P A +L P+ LC+QV ++L L
Sbjct: 107 KLFSA--DSVS----KKKLAPSA--FILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTS 158
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+++ + G P+++VSTPA + + +V DEAD+LL ++
Sbjct: 159 SMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYE 218
Query: 260 NQVIRLINMF--RFDEKQLSRMNESGVEK--PLEMDNS---SLTQPDLQDE---ENLQDE 309
+ + + ++ R +S S VEK L + N +LT+ + ++E N+Q
Sbjct: 219 DNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQF 278
Query: 310 YIS 312
+IS
Sbjct: 279 WIS 281
Score = 87 (35.7 bits), Expect = 6.1e-21, Sum P(3) = 6.1e-21
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
RGID V VI D S ++HR+GRT RA G SL + + + I+
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIK 452
Score = 53 (23.7 bits), Expect = 6.1e-21, Sum P(3) = 6.1e-21
Identities = 20/91 (21%), Positives = 41/91 (45%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+++ WI + ++ ++ +K LE + ++F NT+D + + L+ GI+
Sbjct: 275 VQQFWISCSAQDKLLHILALLK--LE--VVQKKILIFINTIDMGFRLKLFLEKFGIKSAI 330
Query: 454 YHKDLSLEERAKTLVNFQEKGGVF---VCTD 481
+ +L R L F G+F + TD
Sbjct: 331 LNGELPQNSRLHILEQFN--AGLFDYLIATD 359
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 175 (66.7 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 454 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 513
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 514 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 557
Score = 152 (58.6 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 200 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 258
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 259 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 313
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 314 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 369
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 370 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 411
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 175 (66.7 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++FA V A+ + L G+E H EER K + F+E K V V TD A++G
Sbjct: 463 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 522
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+D P + HVI D +++HR+GRT R+G G+ T+ ++
Sbjct: 523 LDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKA 566
Score = 152 (58.6 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K + ++R L+ G P+ +Q + +LSG+D++ A TGSGKT + +P+I
Sbjct: 209 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI- 267
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ---VVRMANALSADNGEPLVRAV 201
C L + K P L++CP+ L Q ++ L ++ PL+R
Sbjct: 268 MFC--LEQEKRLPFSKREGPY---GLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCA 322
Query: 202 AVCGGQGWPIGKPDV------IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG + +V+TP L++ + K+ ++ R Y+ DEAD ++
Sbjct: 323 LCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQ-KKMVSLDICR---YLALDEADRMID 378
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ + + + F+ ++Q + + +K S+L +P
Sbjct: 379 MGFEGDIRTIFSYFK-GQRQTLLFSATMPKKIQNFAKSALVKP 420
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 184 (69.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 54/189 (28%), Positives = 94/189 (49%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
+ T SD+ P +++L P L +Q+ G+PL +R VAV
Sbjct: 452 WITTLPKIDRIEESDQGPY-----AIILAPTRELAQQIEEETIKF----GKPLGIRPVAV 502
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG+ + +++++TP L ID R + R YVV DEAD ++
Sbjct: 503 IGGISREDQGFRLRMGCEIVIATPGRL---IDVLENRYLVLSR-CTYVVLDEADRMIDMG 558
Query: 258 FQNQVIRLI 266
F+ V +++
Sbjct: 559 FEPDVQKIL 567
Score = 145 (56.1 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 455 HKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H E+R L N + + V TD A RGIDI +VS V+ D A + D++HR+GR
Sbjct: 676 HGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGR 735
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
T RAG+ G+ + T+ + + +++A L PV
Sbjct: 736 TGRAGKSGVAITFLTKEDSAVFYELKQAI-LESPV 769
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 173 (66.0 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 59/235 (25%), Positives = 118/235 (50%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGLS++ ++ ++ GF + +Q ++ P+L+G+DV+ AA+TGSGKT ++L+P IE L
Sbjct: 133 LGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSA 192
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP--LVRAVAVCGG 206
N +V+ P L Q+ +A L + + +V A
Sbjct: 193 LRFKPRNGTG----------VIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRA 242
Query: 207 QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFV-RGVKYVVFDEADMLLCGSFQNQVIR 264
+ + K +++++TP LL+++ + FV + +K +V DEAD +L F++++ +
Sbjct: 243 EAEKLTKGVNLLIATPGRLLDHL----QNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQ 298
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
+I + +++Q + + K ++ SL L + + E+ + EG +G
Sbjct: 299 IIKILPNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 353
Score = 153 (58.9 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
L++ ++ D + L +K L+ + +VF ++ + V ++L +
Sbjct: 350 LEQGYVICEADKRFLLLFSFLKRNLK-----KKIIVFFSSCNCVKYHAELLNYIDLPVLD 404
Query: 454 YHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H ++R T F K GV +CTD AARG+DIP V +IQ D D++HRVG
Sbjct: 405 LHGKQKQQKRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVG 464
Query: 513 RTARAGQYGLVTSL 526
RTAR G G SL
Sbjct: 465 RTAR-GANGRGRSL 477
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
++ VEG ET + K KD +K + Q
Sbjct: 37 ENGVEGKATETTTELTKDKDVELAKKVVKEEAQ 69
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 167 (63.8 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 56/195 (28%), Positives = 88/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQSILQVGPVF 511
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ L+E ++ G E R MVF T + L I H D ER +
Sbjct: 512 KKRKLVEILRN---IGDE--RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 566
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI + ++ +++HR+GRT R G G
Sbjct: 567 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAI 626
Query: 525 SLY-TESNRDLVDTI 538
S + TES+ L +
Sbjct: 627 SFFDTESDNHLAQPL 641
Score = 161 (61.7 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 53/190 (27%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ VL+G+D++ A+TGSGKT ++L+P++
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 333 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 384
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ VKY+V DEAD +L
Sbjct: 385 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQVKYLVLDEADRMLDMG 440
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 441 FGPEMKKLIS 450
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 167 (63.8 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 56/195 (28%), Positives = 88/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ AG LK +F + G +++ ++V
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRD-----VQQSILQVGPVF 511
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ L+E ++ G E R MVF T + L I H D ER +
Sbjct: 512 KKRKLVEILRN---IGDE--RPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 566
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI + ++ +++HR+GRT R G G
Sbjct: 567 ALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAI 626
Query: 525 SLY-TESNRDLVDTI 538
S + TES+ L +
Sbjct: 627 SFFDTESDNHLAQPL 641
Score = 161 (61.7 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 53/190 (27%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ VL+G+D++ A+TGSGKT ++L+P++
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 333 AHM---MRDGITASRFKELQEPEC--IIVAPTRELINQIYLEARKFSFGT---CVRAVVI 384
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ VKY+V DEAD +L
Sbjct: 385 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQVKYLVLDEADRMLDMG 440
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 441 FGPEMKKLIS 450
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 169 (64.5 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
Identities = 56/195 (28%), Positives = 89/195 (45%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +AT P ++ A LK +F + G +++ ++V +
Sbjct: 470 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRD-----VQQADLQVGQYS 524
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ + L+E ++ G E RTMVF T + L I H D ER +
Sbjct: 525 KREKLLEILRN---IGDE--RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 579
Query: 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L +F+ K V V T AARG+DI NV HVI D ++ +++HR+GRT R G G
Sbjct: 580 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 639
Query: 525 SLYT-ESNRDLVDTI 538
S + ES+ L +
Sbjct: 640 SFFDLESDNHLAQPL 654
Score = 159 (61.0 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
Identities = 51/190 (26%), Positives = 98/190 (51%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L L + +G+ + + VQ S+ +L+G+D++ A+TGSGKT ++L+P++
Sbjct: 286 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 345
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + D ++ KE P +++ P L Q+ A S VRAV +
Sbjct: 346 AHM---MHDGITASRFKELQEPEC--IIVAPTRELVNQIYLEARKFSFGT---CVRAVVI 397
Query: 204 CGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I + +++ +TP L++ I ++ ++ +KY+V DEAD +L
Sbjct: 398 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG----LKQIKYLVLDEADRMLDMG 453
Query: 258 FQNQVIRLIN 267
F ++ +LI+
Sbjct: 454 FGPEMKKLIS 463
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 174 (66.3 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
Identities = 56/190 (29%), Positives = 102/190 (53%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SLGLS ++RA+ G+ P+ +Q ++ VL G+D++ +A+TG+GKT + +PL+
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
+ L T ++ P RA L+L P L Q+ D + L +R++
Sbjct: 61 QHLITRQPHAKGRR------PVRA--LILTPTRELAAQIGENVR----DYSKYLNIRSLV 108
Query: 203 VCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG Q + G DV+V+TP LL+ ++ + +++ V+ +V DEAD +L
Sbjct: 109 VFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQNAVKLD---QVEILVLDEADRMLDM 164
Query: 257 SFQNQVIRLI 266
F + + R++
Sbjct: 165 GFIHDIRRVL 174
Score = 147 (56.8 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
Identities = 37/119 (31%), Positives = 54/119 (45%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + + L GI H + S R + L +F+ V V TD AA
Sbjct: 247 QVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + HV+ + D++HR+GRT RA G SL L+ I + K
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 170 (64.9 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 55/218 (25%), Positives = 108/218 (49%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W GL + + ++ GF + +QA ++ ++SG+DV+ A+TGSGKT ++L+P+
Sbjct: 543 WSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRH 602
Query: 146 LCTALGDSENSNSDKEPTPP-RAPSLVLCPNVVL-CEQVVRMAN--ALSADNGEPLVRAV 201
+ D + + P P+ L + C+ ++ N A+ A G P+ +
Sbjct: 603 I----KDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQI 658
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
A +G ++IV TP +++ + R+ +R V YVV DEAD + F+ Q
Sbjct: 659 AELK-RG-----AEIIVCTPGRMIDLL-AANAGRVTNLRRVTYVVLDEADRMFDMGFEPQ 711
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLE-MDNSSLTQP 298
V+++++ R D + + + + + +E + +LT+P
Sbjct: 712 VMKILSNVRPDRQTV--LFSATFPRNMEALARKTLTKP 747
Score = 163 (62.4 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
Identities = 55/213 (25%), Positives = 94/213 (44%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ N + +Q + +AT P N + A L + P + G + P + + +EV
Sbjct: 714 KILSNVRPDRQTVLFSATFPRNMEALARKTLTK--PIEIVVGGRSVVA--PEITQI-VEV 768
Query: 402 -TVDTQVDALIEAVKERLEFGA-ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
+ + L+E + E +R+++F + +A + + L G C H
Sbjct: 769 CNEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKD 828
Query: 460 LEERAKTLVNFQEKGGVF---VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+R T+ +F K G+F + T AARG+D+ + V+ D D++HR GRT R
Sbjct: 829 QIDRDSTIEDF--KAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 886
Query: 517 AGQYGLVTSLYTESN-RDLVDTIRRAAKLGQPV 548
AG G + TE R VD + + GQ V
Sbjct: 887 AGNTGTAVTFLTEDQERYSVDIAKALKQSGQEV 919
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 192 (72.6 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 62/212 (29%), Positives = 107/212 (50%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS---GNYLHFHNPRLKEK 397
R + N + +Q + +AT P++ K A Q F D + I G+ N + +
Sbjct: 287 RFILSNTNKVRQMVMFSATWPLDVHKLA-----QEFMDPNPIKVIIGSVDLAANHDVMQI 341
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
IEV + D + A+ E+ ++ +R +VFA + + L+ G + H +
Sbjct: 342 -IEVLDERARDQRLIALLEKYH-KSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGN 399
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ER ++L F+E + V TD AARG+DIP+V VI F + D++HR+GRT R
Sbjct: 400 KAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGR 459
Query: 517 AGQYGLVTSLYTESNR----DLVDTIRRAAKL 544
AG+ G+ + +T N+ +LV+ +R A ++
Sbjct: 460 AGKKGVAHTFFTPLNKGLAGELVNVLREAGQV 491
Score = 130 (50.8 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 49/166 (29%), Positives = 84/166 (50%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F +PS +Q+ + +L G+D++ A+TGSGKT ++ +P I + + + K+
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKK--NKKIGGGSKKVN 191
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVCGG--QGWPIGK----PDV 216
P LVL P E V++++ L + GEP ++++ V GG +G I D+
Sbjct: 192 PT---CLVLSPTR---ELAVQISDVLR-EAGEPCGLKSICVYGGSSKGPQISAIRSGVDI 244
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
++ TP L + I+ R + V +VV DEAD +L F+ V
Sbjct: 245 VIGTPGRLRDLIESNVLRLSD----VSFVVLDEADRMLDMGFEEPV 286
Score = 47 (21.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 284 VEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRV 343
VE P+ ++ + EEN + E + E V EE S KKK +R
Sbjct: 17 VESPMTNKKKKKSKKNKHTEENHEVEEVPQE--------VTNGVEEELSNKEKKKKRKRE 68
Query: 344 RKNYQRSKQ 352
K +++K+
Sbjct: 69 EKESEKNKK 77
WARNING: HSPs involving 599 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 548 522 0.00090 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 849
No. of states in DFA: 618 (66 KB)
Total size of DFA: 295 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.29u 0.08s 48.37t Elapsed: 00:00:07
Total cpu time: 48.38u 0.09s 48.47t Elapsed: 00:00:07
Start: Fri May 10 04:10:14 2013 End: Fri May 10 04:10:21 2013
WARNINGS ISSUED: 2