BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045757
(548 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255558388|ref|XP_002520221.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223540713|gb|EEF42276.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 550
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/553 (66%), Positives = 445/553 (80%), Gaps = 10/553 (1%)
Query: 1 MILHRSSSMFHFYK-LSSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFR 59
M+L+RS+S+ HFYK LSS PKLL + + S S L++RF L+Q G+ R
Sbjct: 1 MLLYRSASVLHFYKFLSSSPKLLLISHFNHSYSHLSNSPLSSSLKIRFFCLSQSFGKNNR 60
Query: 60 GFA-AAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
F+ +AAAV++DK+G+ DTFFA+D+V+W SLGLSDRL RA+ NSG RPS+VQAAS+ +
Sbjct: 61 RFSTSAAAVLADKSGT-DTFFANDDVSWSSLGLSDRLCRAISNSGLERPSLVQAASIPSI 119
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178
LSGKDVV+AAETGSGKTH+YLV LI+KL DSE+ +S + SLVLCPNV+L
Sbjct: 120 LSGKDVVVAAETGSGKTHTYLVSLIDKLSNPKDDSEDLDSHE----GLKLSLVLCPNVLL 175
Query: 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF 238
CEQVVRMA+ L DNG+PL+ A+ G QGWP+ +PD+IVSTPAALLNNID +++RR+ F
Sbjct: 176 CEQVVRMASGLCDDNGQPLLNVTALGGRQGWPVKRPDIIVSTPAALLNNIDTRKQRRLNF 235
Query: 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+R VKYVVFDEADMLLCGSFQNQV+R+INM RF+EKQLS+ + + E+D+ SL +
Sbjct: 236 MRLVKYVVFDEADMLLCGSFQNQVLRIINMLRFEEKQLSKGTDFAPKNIAELDSDSLGEV 295
Query: 299 DLQDEENLQDEYISDEGN-FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVA 357
L+DEE LQ+E +S+E +EGD ++ EE + GSIKK+DWRRVRK+Y RSKQYIFVA
Sbjct: 296 GLEDEEELQNESLSEEDEAYEGDIEIGDSKEEAEGGSIKKQDWRRVRKDYVRSKQYIFVA 355
Query: 358 ATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKER 417
ATLPINGKKTAGAVLK+MFPDA+WISGNYLH HNPRL++KWIEVTVDTQVDALI+AVK+
Sbjct: 356 ATLPINGKKTAGAVLKRMFPDANWISGNYLHCHNPRLQQKWIEVTVDTQVDALIDAVKQG 415
Query: 418 LEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG 475
G RTMVFANTVDAV AV KIL+ AGIECY YHKD SLEERA+TLV+F+EKGG
Sbjct: 416 SGSGLGVGVSRTMVFANTVDAVEAVVKILERAGIECYRYHKDTSLEERAETLVDFREKGG 475
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
+FVCTDAAARG+D+PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT+SNRDLV
Sbjct: 476 IFVCTDAAARGVDVPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTDSNRDLV 535
Query: 536 DTIRRAAKLGQPV 548
IR+A KLGQPV
Sbjct: 536 HAIRQAKKLGQPV 548
>gi|225424754|ref|XP_002266408.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22 [Vitis vinifera]
gi|296086509|emb|CBI32098.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/563 (64%), Positives = 437/563 (77%), Gaps = 16/563 (2%)
Query: 1 MILHRSSSMFHFYKLSSPPKLLSKFNAS-SSCLSNSAPSSFYPLRVRFLRLNQWKGRPFR 59
M +HR +SM HF +LSSPP+LLS F + SS L S+ + LR+ L+ + R R
Sbjct: 1 MTVHRCASMLHFSRLSSPPRLLSPFKSCYSSLLDRSSSAPSSSLRIGLYWLDSPRRRRTR 60
Query: 60 GFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119
F A+A D+NG+ +TFFAD V+W SLG+SDRL RAL G RPS+VQAA + +L
Sbjct: 61 AFGTASAASQDRNGA-ETFFADQGVSWASLGVSDRLTRALSTIGIERPSLVQAACIPYIL 119
Query: 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179
SG DVV+AAETGSGKTH YLVPLI+KLC DS ++++D+E LVLCPNV+LC
Sbjct: 120 SGNDVVVAAETGSGKTHGYLVPLIDKLCGTPNDSVDASTDQESRHLHQLCLVLCPNVMLC 179
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNN---IDPKRRRRM 236
EQVV+MAN L DNGEPL+R VAVCG QGWP+ +PD+IVSTPAA LNN IDP+++RR
Sbjct: 180 EQVVQMANCLCGDNGEPLLRVVAVCGRQGWPVKEPDIIVSTPAAFLNNLNAIDPEKQRRS 239
Query: 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLT 296
F+RGVK VVFDEADMLLCGSFQNQVIRLI+M RFDEK LSR+ +S +K +E+++ S+
Sbjct: 240 NFLRGVKCVVFDEADMLLCGSFQNQVIRLIDMLRFDEKILSRIKKSVPDKQMELESDSML 299
Query: 297 Q-----PDLQDEENLQDEYISDEG-NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS 350
++E Q E ISDE N G+ VEG TEE + GSIKKKDWRRVRKNY+RS
Sbjct: 300 HFYSESEKDEEETEEQTEIISDEEENVVGEPVVEGFTEEIEVGSIKKKDWRRVRKNYERS 359
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
KQYIFVAATLP+NGKKTAG VLK+MFPDA W+SG YLH HNPRL++KWIEVTVDTQVDAL
Sbjct: 360 KQYIFVAATLPVNGKKTAGGVLKRMFPDAHWVSGGYLHCHNPRLEQKWIEVTVDTQVDAL 419
Query: 411 IEAVKER-----LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
I+AVK+ L+ G SRTMVFANTV+AV A++KIL AG+EC+ YH+D SLEERAK
Sbjct: 420 IDAVKQGFRSKVLDSGVGVSRTMVFANTVEAVEAISKILHRAGVECFRYHRDSSLEERAK 479
Query: 466 TLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
TLV+FQ+KGGV VCTD+AARG+DIPN+SHVIQADFATSA+DFLHRVGRTARAGQ+GLVTS
Sbjct: 480 TLVDFQQKGGVLVCTDSAARGLDIPNISHVIQADFATSALDFLHRVGRTARAGQFGLVTS 539
Query: 526 LYTESNRDLVDTIRRAAKLGQPV 548
LYTESNRDLV IR+A KLGQPV
Sbjct: 540 LYTESNRDLVAAIRQADKLGQPV 562
>gi|224102503|ref|XP_002312702.1| predicted protein [Populus trichocarpa]
gi|222852522|gb|EEE90069.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/568 (63%), Positives = 428/568 (75%), Gaps = 44/568 (7%)
Query: 9 MFHF-YKLSSP-------PKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRG 60
M H YK+ +P PK LS+ S S LS+ PLR+R LN R RG
Sbjct: 1 MLHSSYKILAPSSLPPRQPKPLSQLKPSFSFLSS-------PLRIRLFFLNP---RAIRG 50
Query: 61 FAAA--AAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
FA A A + + +++TFF+D V+W SLGLS L RAL N+GF RPS+VQAA++ +
Sbjct: 51 FATAVVAETKAAETKTAETFFSDHAVSWASLGLSHPLSRALSNTGFSRPSLVQAAAIPSI 110
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP-PRAPSLVLCPNVV 177
LSGKDVVIAAETGSGKTHSYLVPLI +A S S + TP P SLVLCPNV+
Sbjct: 111 LSGKDVVIAAETGSGKTHSYLVPLINNRLSA------SASQQGLTPTPSGLSLVLCPNVL 164
Query: 178 LCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRME 237
LC+QVVRMA+ L D+G PL++ AVCG QGWP+ +PD+IVSTPAALLNNIDPK++ R
Sbjct: 165 LCDQVVRMASGLCDDDGHPLLKVAAVCGRQGWPVNQPDIIVSTPAALLNNIDPKKQSRSS 224
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
F+RGVKYVVFDEADMLLCG FQNQVIRLINM RFDEKQLSR N+S VE P + + SL +
Sbjct: 225 FIRGVKYVVFDEADMLLCGGFQNQVIRLINMLRFDEKQLSRANKSAVEVPQGIGSDSLER 284
Query: 298 PDLQDEENLQDEYI------------SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRK 345
+D E+ Q+ + ++ +F + +VE + EE ++GSI +KDWRRVRK
Sbjct: 285 FSSEDVEDQQESVLEEDEEDQQESVLEEDEDFVAEFEVEDIKEEIEAGSIDRKDWRRVRK 344
Query: 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
NY+RSKQYIFVAATLP+NGKKTAGA+LK+MFPDA+WISG YLH HNPRL+ KW+EVTVDT
Sbjct: 345 NYERSKQYIFVAATLPVNGKKTAGAMLKRMFPDANWISGTYLHCHNPRLERKWVEVTVDT 404
Query: 406 QVDALIEAVKE-----RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
Q+ ALIEAVK+ L++GA SRTMVFANTV+AV AV KIL AGIEC+ YHKD SL
Sbjct: 405 QLHALIEAVKQGFRSDMLDYGAGVSRTMVFANTVEAVEAVAKILGKAGIECFRYHKDSSL 464
Query: 461 EERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
EERAKTLV+F+EKGGVFVCTDAAARG+DIP+VSHVIQADFATSAVDFLHRVGRTARAG +
Sbjct: 465 EERAKTLVDFREKGGVFVCTDAAARGVDIPDVSHVIQADFATSAVDFLHRVGRTARAGHH 524
Query: 521 GLVTSLYTESNRDLVDTIRRAAKLGQPV 548
GLVTSLYTESNRDLVD IR+A KLGQPV
Sbjct: 525 GLVTSLYTESNRDLVDAIRQAEKLGQPV 552
>gi|15218967|ref|NP_176207.1| DEAD-box ATP-dependent RNA helicase 22 [Arabidopsis thaliana]
gi|75331892|sp|Q944S1.1|RH22_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 22
gi|15983392|gb|AAL11564.1|AF424570_1 At1g59990/T2K10_4 [Arabidopsis thaliana]
gi|22655388|gb|AAM98286.1| At1g59990/T2K10_4 [Arabidopsis thaliana]
gi|332195526|gb|AEE33647.1| DEAD-box ATP-dependent RNA helicase 22 [Arabidopsis thaliana]
Length = 581
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/561 (59%), Positives = 414/561 (73%), Gaps = 26/561 (4%)
Query: 1 MILHRSSSMFHFYKLSS--PPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPF 58
MIL RS S+ H +SS P KLLS+ S L+ + SF R LN+ +
Sbjct: 1 MILSRSVSVLHLCGVSSSAPSKLLSQRFKVSFALAYGSSVSF-----RLSSLNRSDRKWV 55
Query: 59 RGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
RGFA+A +K G+ DTFFAD V+WKSLGLSD + AL +SGF RPS+ QA + +
Sbjct: 56 RGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSI 114
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178
LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+L
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML 174
Query: 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF 238
CEQVVRM N L ++G PL+R AVCG QGWP PD+IVSTPAALLNNI+PKR RR+EF
Sbjct: 175 CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEF 234
Query: 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+R VKYVVFDEADMLLCGSFQNQ+IRLINM RFDEKQ+SR+ +S + +P+E+D +S+ Q
Sbjct: 235 LRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEKQVSRLAKSNLGRPMEID-ASVPQI 293
Query: 299 DLQDEENLQDEYISDEGNFEG-----------DSDVEGLTEETKSGSIKKKDWRRVRKNY 347
DL++E++ + DEG+ D + + E ++GS KK WRRVRK Y
Sbjct: 294 DLENEDDAE----FDEGSISEEEDEEEEEEYLDDIAQMPSVEAEAGSDTKKGWRRVRKIY 349
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407
RSKQYIF+AATLP+NGKKTAG +LK MF DA W+SGN+LH ++PRLK+KW+EVTVD+QV
Sbjct: 350 TRSKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQV 409
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
DALIEAVK E RTMVFANTV+AV AV IL+ A I+CY YHK+ L+ERA L
Sbjct: 410 DALIEAVKNNNNTNTE--RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANIL 467
Query: 468 VNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+F+E GGVFVCTDAAARG+D+PNVSHVIQADFA+SAVDFLHR+GRTARAGQYG VTSLY
Sbjct: 468 ADFRETGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLY 527
Query: 528 TESNRDLVDTIRRAAKLGQPV 548
TE+NRDLV+ IR A K+GQPV
Sbjct: 528 TEANRDLVEAIREAVKMGQPV 548
>gi|297837523|ref|XP_002886643.1| hypothetical protein ARALYDRAFT_475311 [Arabidopsis lyrata subsp.
lyrata]
gi|297332484|gb|EFH62902.1| hypothetical protein ARALYDRAFT_475311 [Arabidopsis lyrata subsp.
lyrata]
Length = 579
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/555 (60%), Positives = 412/555 (74%), Gaps = 16/555 (2%)
Query: 1 MILHRSSSMFHFYKLSS--PPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPF 58
MIL RS S+ H +SS P KLLS+ S L+ + SF R LN+ +
Sbjct: 1 MILSRSVSVLHLCGVSSSAPSKLLSQRFKVSFALAYCSSVSF-----RLNSLNRSDAKWV 55
Query: 59 RGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
RGFA+ +K G+ DTFFAD+ V+WKSLGLSD + AL +SGF RPS+ QA + +
Sbjct: 56 RGFASTTEAEVEKKGN-DTFFADNTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSI 114
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178
LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+L
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDRLTNTALDSEYTNGEERPFPLKNLSLILCPNVML 174
Query: 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF 238
CEQVVRM N L ++G PL+R AVC QGWP PD+IVSTPAALLNNI+PKR RR+EF
Sbjct: 175 CEQVVRMVNGLLGEDGNPLLRVEAVCVPQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEF 234
Query: 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+R VKYVVFDEADMLLCGSFQNQ+IRLINM RFDEKQ+SR+ S + K +E+D +S+ Q
Sbjct: 235 LRSVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEKQVSRLATSTIGKTMEID-ASVPQI 293
Query: 299 DLQDEENLQ--DEYISDEGNFEG---DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQY 353
DL++E++ + D IS+E E D + E ++GS KK WRRVRK Y RSKQY
Sbjct: 294 DLENEDDAEFDDGSISEEEEEEEEHIDDTAHMPSVEAEAGSDTKKGWRRVRKIYSRSKQY 353
Query: 354 IFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEA 413
IF+AATLP+NGKKTAG +LK MF DA W+SGN+LH ++PRLK+KW+EVTVD+QVDALIEA
Sbjct: 354 IFIAATLPVNGKKTAGGILKHMFQDAIWVSGNFLHRNSPRLKQKWVEVTVDSQVDALIEA 413
Query: 414 VKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK 473
VK E RTMVFANTV+AV AV IL+ A I+CY YHK+ L+ERA L +F+E
Sbjct: 414 VKNNNNTNTE--RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRET 471
Query: 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
GGVFVCTDAAARG+D+PNVSHVIQADFA+SAVDFLHR+GRTARAGQYG VTSLYTE+NRD
Sbjct: 472 GGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRD 531
Query: 534 LVDTIRRAAKLGQPV 548
LV+ IR A K+GQPV
Sbjct: 532 LVEAIREAVKMGQPV 546
>gi|356570099|ref|XP_003553228.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Glycine
max]
Length = 579
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/557 (60%), Positives = 411/557 (73%), Gaps = 21/557 (3%)
Query: 1 MILHRSSSMFHFYKLSSPP---KLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRP 57
MI+ RS+ M H L +PP S F+ + + + P F P R Q + R
Sbjct: 1 MIVTRSALMLH---LQNPPIRYHFFSHFSYAPTFPTLFKPRPFSPTTPR-----QAQTRT 52
Query: 58 FRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGP 117
F A+++ + + DTFFA++NV+W SLGLSD + RAL N G RPS+VQA+SV
Sbjct: 53 FVSAVASSSSAAHGSNGRDTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPS 112
Query: 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177
VL GKDV+IAAETGSGKT+SYLVPLI+KL A S ++ D++ T P+ LVLCPNV
Sbjct: 113 VLLGKDVIIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAVLDQKVTSPQNVLLVLCPNVQ 172
Query: 178 LCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRME 237
LCEQVVRMAN+L D+GE +V A+CG QGWPI +PDVIV+TPAALLN +D R RRME
Sbjct: 173 LCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRME 232
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
F+RGVKYVVFDEAD+LLCGSFQN+VIRLIN+ RFDEK LSR +S E P++ + S ++
Sbjct: 233 FMRGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQEFSLSSE 292
Query: 298 PDLQDEENLQDEYISDEGNFEGDSDVEGLTE-ETKSGSIKKKDWRRVRKNYQRSKQYIFV 356
+ EE LQ E IS+ + D+D E + + ++G++K +DWRRVRKNY+RSKQY+FV
Sbjct: 293 DAFEGEEELQTEAISE----DDDNDKEDIVDINNEAGNVKLRDWRRVRKNYERSKQYVFV 348
Query: 357 AATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE 416
AATLP+NGKKTAG VLK MFPDA+W+ GNYLH HNPRL++KWIEV VDTQVD LI+AV
Sbjct: 349 AATLPVNGKKTAGGVLKYMFPDAEWVCGNYLHCHNPRLEQKWIEVMVDTQVDELIKAVNH 408
Query: 417 R-----LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
R L RTMVFANTV+AV AV KIL +GIEC YHK+ +LEERA+TLV+FQ
Sbjct: 409 RFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFQ 468
Query: 472 EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
+KGGV VCTDAAARG+DIPNV HVIQADFATSAVDFLHRVGRTARAGQ GLVTS+ TESN
Sbjct: 469 DKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMCTESN 528
Query: 532 RDLVDTIRRAAKLGQPV 548
R+LV+ +RRA +L QPV
Sbjct: 529 RELVNAVRRAGELDQPV 545
>gi|356524081|ref|XP_003530661.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Glycine
max]
Length = 577
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/554 (60%), Positives = 411/554 (74%), Gaps = 17/554 (3%)
Query: 1 MILHRSSSMFHFYKLSSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRG 60
MI+ RS+ M H L +PP F+ S L+ + PS F P RF + + R
Sbjct: 1 MIVTRSALMLH---LQNPPIRYHFFSHFS--LAPTFPSLFKP---RFFSITTPRQAQTRT 52
Query: 61 FAAAAAVVSDKNGSS-DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119
F +A A S + + DTFFA++NV+W SLGLSD + RAL N G RPS+VQA+SV VL
Sbjct: 53 FVSAVASSSSQGSNGRDTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPSVL 112
Query: 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179
SGKDV+IAAETGSGKT+SYLVPLI+KL S + SD+E T LVLCPNV LC
Sbjct: 113 SGKDVIIAAETGSGKTYSYLVPLIDKLRVTQERSLLAVSDREVTSLHKVLLVLCPNVQLC 172
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFV 239
EQVVRMAN+L D+ E +V A A+CG QGWPI +PDVIV+TPAALLN +D R RR+EF+
Sbjct: 173 EQVVRMANSLCKDDSETIVSAAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRVEFM 232
Query: 240 RGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
RGVKYVVFDEAD+LLCGSFQN+VIRLIN+ RFDEK LSR +S E P++ ++S ++
Sbjct: 233 RGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQESSLSSEDA 292
Query: 300 LQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAAT 359
+ EE L+ E I +E N + + D+ + E + ++K +DWRRVRKNY+RSKQY+FVAAT
Sbjct: 293 FEGEEKLETEAILEEDNNDKE-DIADINNEAE--NVKLRDWRRVRKNYERSKQYVFVAAT 349
Query: 360 LPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKER-- 417
LP+NGKKTAG VLK MFPDA+W+ G+YLH HNPRL++KWIEVTVDTQVD LI+AV R
Sbjct: 350 LPVNGKKTAGGVLKYMFPDAEWVCGDYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHRFR 409
Query: 418 ---LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG 474
L RTMVFANTV+AV AV KIL +GIEC YHK+ +LEERA+TLV+F +KG
Sbjct: 410 SEDLVNAGGIHRTMVFANTVEAVEAVAKILLHSGIECSRYHKNCTLEERAQTLVDFHDKG 469
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
GV VCTDAAARG+DIPNV HVIQ DFATSAVDFLHRVGRTARAGQ+GLVTS+YTESNR+L
Sbjct: 470 GVLVCTDAAARGVDIPNVLHVIQVDFATSAVDFLHRVGRTARAGQFGLVTSMYTESNREL 529
Query: 535 VDTIRRAAKLGQPV 548
V+ +RRA +L QPV
Sbjct: 530 VNAVRRAGELDQPV 543
>gi|357516669|ref|XP_003628623.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355522645|gb|AET03099.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 594
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/501 (63%), Positives = 388/501 (77%), Gaps = 11/501 (2%)
Query: 54 KGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAA 113
+ +PF G +AV S+ DTFFA+DNV+W S+GLS L RAL N PS+VQA+
Sbjct: 64 QTQPFVG----SAVSSEDFNGRDTFFAEDNVSWSSIGLSHTLSRALSNIALNTPSLVQAS 119
Query: 114 SVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPP-RAPSLVL 172
S+ VLSGKDVVIAAETGSGKT+SYL+PLI+KL S + SDKE +PP R LVL
Sbjct: 120 SIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRGTEEYSLDVVSDKEISPPARKVLLVL 179
Query: 173 CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKR 232
CPNV LCEQVVRMAN+L DN E +V A A+CG QGWPI +PD+IV+TPAALLN++D R
Sbjct: 180 CPNVQLCEQVVRMANSLCGDNDETIVSAAAICGKQGWPIREPDIIVTTPAALLNHVDVDR 239
Query: 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDN 292
RRRMEF+ GVKYVVFDEADMLLCGSFQN+VIRLIN+ R+DEK LSR S E P+ +++
Sbjct: 240 RRRMEFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKLLSRSKTSVSELPVTLES 299
Query: 293 SSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
S + + EE E +SDE + + + D+ + E +S ++DWRRVRK+++RSKQ
Sbjct: 300 SLSSHDASEGEEEFPTEAMSDEED-DDNEDIANINNEAESVKKTRRDWRRVRKHFERSKQ 358
Query: 353 YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIE 412
Y+FVAATLP+NGKKTAGA+LK MFPDA+W+SGNYLH HNPRLK++WIEVTVDTQV LI
Sbjct: 359 YVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELIR 418
Query: 413 AVK-----ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
AV E L+ G+ RTMVFANTV+AV AV KIL AG+EC YHK+ +L+ERA+TL
Sbjct: 419 AVNHSLKLEDLDIGSGIHRTMVFANTVEAVEAVVKILGYAGLECLRYHKNCTLDERAQTL 478
Query: 468 VNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
V+F +KGGV VCTDAAARG+DIPNVSHVIQADFATSAVDFLHR+GRTARAGQ GLVTS+Y
Sbjct: 479 VDFYDKGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTSMY 538
Query: 528 TESNRDLVDTIRRAAKLGQPV 548
TESNR+LVD +RRA +LG PV
Sbjct: 539 TESNRELVDAVRRAGELGLPV 559
>gi|3776015|emb|CAA09210.1| RNA helicase [Arabidopsis thaliana]
gi|4249378|gb|AAD14475.1| Identical to gb|AJ010471 mRNA for DEAD box RNA helicase (RH22) from
Arabidopsis thaliana. EST gb|Y11191 comes from this
gene, partial [Arabidopsis thaliana]
Length = 505
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/479 (63%), Positives = 371/479 (77%), Gaps = 18/479 (3%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D V+WKSLGLSD + AL +SGF RPS+ QA + +LSGKDV++AAETGSGKTH YL
Sbjct: 1 DHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLA 60
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+I++L DSE +N ++ P P + SL+LCPNV+LCEQVVRM N L ++G PL+R
Sbjct: 61 PIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRV 120
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
AVCG QGWP PD+IVSTPAALLNNI+PKR RR+EF+R VKYVVFDEADMLLCGSFQN
Sbjct: 121 EAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQN 180
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG- 319
Q+IRLINM RFDEKQ+SR+ +S + +P+E+D +S+ Q DL++E++ + DEG+
Sbjct: 181 QIIRLINMLRFDEKQVSRLAKSNLGRPMEID-ASVPQIDLENEDDAE----FDEGSISEE 235
Query: 320 ----------DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAG 369
D + + E ++GS KK WRRVRK Y RSKQYIF+AATLP+NGKKTAG
Sbjct: 236 EDEEEEEEYLDDIAQMPSVEAEAGSDTKKGWRRVRKIYTRSKQYIFIAATLPVNGKKTAG 295
Query: 370 AVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMV 429
+LK MF DA W+SGN+LH ++PRLK+KW+EVTVD+QVDALIEAVK E RTMV
Sbjct: 296 GILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQVDALIEAVKNNNNTNTE--RTMV 353
Query: 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDI 489
FANTV+AV AV IL+ A I+CY YHK+ L+ERA L +F+E GGVFVCTDAAARG+D+
Sbjct: 354 FANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRETGGVFVCTDAAARGVDV 413
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
PNVSHVIQADFA+SAVDFLHR+GRTARAGQYG VTSLYTE+NRDLV+ IR A K+GQPV
Sbjct: 414 PNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIREAVKMGQPV 472
>gi|449435378|ref|XP_004135472.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Cucumis
sativus]
Length = 589
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/567 (55%), Positives = 401/567 (70%), Gaps = 25/567 (4%)
Query: 1 MILHRSSSMFHFYKLSSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFR- 59
M+L+RS S H +L+ KLL S+ + NS +R+ + L Q R R
Sbjct: 1 MLLYRSVSALHLERLTLSSKLLFSLKNSNLLVPNSCS-----IRIGLVCLRQACSRQSRA 55
Query: 60 -GFAAAAAVVSDKNG-SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGP 117
G AA+A + +G DTF+A + V+W SLG+SD + RAL + G RPS++QAA V
Sbjct: 56 VGTVAASAASTAADGIGKDTFYAAEGVSWTSLGVSDTVSRALGSVGMQRPSLIQAACVPS 115
Query: 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177
++SG DVVIAAETGSGKTH YLVPLI K+C G+ + ++ D + SLVLCPNV+
Sbjct: 116 IMSGNDVVIAAETGSGKTHGYLVPLINKICCEHGEDKLTDGDHDLPSLNKLSLVLCPNVM 175
Query: 178 LCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRME 237
LCEQVV+MANAL ++G+ ++R A+CG QGWP+ KPD++VSTPAALLN I+P R RR
Sbjct: 176 LCEQVVQMANALCDEHGKSILRVAAICGRQGWPVHKPDIVVSTPAALLNYIEPNRSRRSA 235
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
F+R VK+VVFDEADMLL GSFQN+VIRLIN+ RF+EK LSR E EK + ++ L+Q
Sbjct: 236 FLRAVKHVVFDEADMLLVGSFQNKVIRLINLLRFEEKLLSRSKEFP-EKLMGLEADPLSQ 294
Query: 298 PDLQDEENLQDEYISDEGNFE------------GDSDVEGLTEETKSGSIKKKDWRRVRK 345
+QDE++LQ E S+ + + + ++T+ S K DWRR+RK
Sbjct: 295 LIVQDEDDLQTETSSEGEGEGEGEEEGEGEESYNEVESNSIQDDTECVSGKVNDWRRIRK 354
Query: 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+Y+RSKQYIFVAATLP+NGKKTAGAVL++MFPDA W+SG YLH HNPRL+++W+EVT D
Sbjct: 355 SYKRSKQYIFVAATLPVNGKKTAGAVLRKMFPDASWVSGKYLHCHNPRLEQRWVEVTTDN 414
Query: 406 QVDALIEAV---KERLEFGAE-TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
QVD LI+AV K +L + RTMVFANTV+ V AV IL AG EC+ YHKD SLE
Sbjct: 415 QVDELIKAVNQSKSQLRVPDDGVIRTMVFANTVETVEAVANILLGAGKECFRYHKDRSLE 474
Query: 462 ERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
ER+K L +F+ +GGVFVCTDAAARG+DIPNVSHVIQADFATSAVDFLHR+GRT RAGQ+G
Sbjct: 475 ERSKILADFRVEGGVFVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTGRAGQHG 534
Query: 522 LVTSLYTESNRDLVDTIRRAAKLGQPV 548
LVTSLYT++NRDLV +RRA L QPV
Sbjct: 535 LVTSLYTKANRDLVSAVRRAENLSQPV 561
>gi|449478712|ref|XP_004155399.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like [Cucumis
sativus]
Length = 591
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/569 (55%), Positives = 401/569 (70%), Gaps = 27/569 (4%)
Query: 1 MILHRSSSMFHFYKLSSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFR- 59
M+L+RS S H +L+ KLL S+ + NS +R+ + L Q R R
Sbjct: 1 MLLYRSVSALHLERLTLSSKLLFSLKNSNLLVPNSCS-----IRIGLVCLRQACSRQSRA 55
Query: 60 -GFAAAAAVVSDKNG-SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGP 117
G AA+A + +G DTF+A + V+W SLG+SD + RAL + G RPS++QAA V
Sbjct: 56 VGTVAASAASTAADGIGKDTFYAAEGVSWTSLGVSDTVSRALGSVGMQRPSLIQAACVPS 115
Query: 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177
++SG DVVIAAETGSGKTH YLVPLI K+C G+ + ++ D + SLVLCPNV+
Sbjct: 116 IMSGNDVVIAAETGSGKTHGYLVPLINKICCEHGEDKLTDGDHDLPSLNKLSLVLCPNVM 175
Query: 178 LCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRME 237
LCEQVV+MANAL ++G+ ++R A+CG QGWP+ KPD++VSTPAALLN I+P R RR
Sbjct: 176 LCEQVVQMANALCDEHGKSILRVAAICGRQGWPVHKPDIVVSTPAALLNYIEPNRSRRSA 235
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
F+R VK+VVFDEADMLL GSFQN+VIRLIN+ RF+EK LSR E EK + ++ L+Q
Sbjct: 236 FLRAVKHVVFDEADMLLVGSFQNKVIRLINLLRFEEKLLSRSKEFP-EKLMGLEADPLSQ 294
Query: 298 PDLQDEENLQDEYISDEGNFE--------------GDSDVEGLTEETKSGSIKKKDWRRV 343
+QDE++LQ E S+ + + + ++T+ S K DWRR+
Sbjct: 295 LIVQDEDDLQTETSSEGEGEGEGEGEEEGEGEESYNEVESNSIQDDTECVSGKVNDWRRI 354
Query: 344 RKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV 403
RK+Y+RSKQYIFVAATLP+NGKKTAGAVL++MFPDA W+SG YLH HNPRL+++W+EVT
Sbjct: 355 RKSYKRSKQYIFVAATLPVNGKKTAGAVLRKMFPDASWVSGKYLHCHNPRLEQRWVEVTT 414
Query: 404 DTQVDALIEAV---KERLEFGAE-TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
D QVD LI+AV K +L + RTMVFANTV+ V AV IL AG EC+ YHKD S
Sbjct: 415 DNQVDELIKAVNQSKSQLRVPDDGVIRTMVFANTVETVEAVANILLGAGKECFRYHKDRS 474
Query: 460 LEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
LEER+K L +F+ +GGVFVCTDAAARG+DIPNVSHVIQADFATSAVDFLHR+GRT RAGQ
Sbjct: 475 LEERSKILADFRVEGGVFVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTGRAGQ 534
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+GLVTSLYT++NRDLV +RRA L QPV
Sbjct: 535 HGLVTSLYTKANRDLVSAVRRAENLSQPV 563
>gi|143361695|sp|Q6H601.2|RH22_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 22
Length = 577
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/479 (60%), Positives = 353/479 (73%), Gaps = 12/479 (2%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FF++++ +W+SLG+SDRL AL +G RPS+VQAA + VL+ DV++AAETGSGKTH
Sbjct: 76 FFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 135
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL
Sbjct: 136 YLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPL 195
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
A AVCG +GWP +PD++V+TPAALLN + DP++RRR F+R VK++VFDEADMLL
Sbjct: 196 KSAAAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLL 255
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314
CGSF+NQVIRLI+M RFDEK LSRM +SG E L N D Q E D DE
Sbjct: 256 CGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQSAELSAD----DE 311
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ 374
N +G + E KKDWRRVRK Y+RSKQY+FVAATLP +GKKTAG VLK+
Sbjct: 312 ENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLKR 371
Query: 375 MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-----RTMV 429
MFP+A W+SG YLH HNPRL+ +WIEVT DTQV AL++AVK L+ + RTMV
Sbjct: 372 MFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTMV 431
Query: 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDI 489
F NTVDA +V+ IL+ G+ C YH+D SLEERAK L +F+E GGV VCTDAAARG+D+
Sbjct: 432 FTNTVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQSFRENGGVLVCTDAAARGLDV 491
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
PNVSHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A +L QPV
Sbjct: 492 PNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEELAQPV 550
>gi|218202084|gb|EEC84511.1| hypothetical protein OsI_31207 [Oryza sativa Indica Group]
Length = 577
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/479 (59%), Positives = 352/479 (73%), Gaps = 12/479 (2%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FF++++ +W+SLG+SDRL AL +G RPS+VQAA + VL+ DV++AAETGSGKTH
Sbjct: 76 FFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 135
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL
Sbjct: 136 YLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPL 195
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
A AVCG +GWP +PD++V+TPA+LLN + DP++RRR F+R VK++VFDEADMLL
Sbjct: 196 KSAAAVCGPKGWPTVRPDILVATPASLLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLL 255
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314
CGSF+NQVIRLI+M RFDEK LSRM +SG E L N D Q E D DE
Sbjct: 256 CGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQSAELSAD----DE 311
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ 374
N + + E KKDWRRVRK Y+RSKQY+FVAATLP +GKKTAG VLK+
Sbjct: 312 ENEDDLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLKR 371
Query: 375 MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-----RTMV 429
MFP+A W+SG YLH HNPRL+ +WIEVT DTQV AL++AVK L+ + RTMV
Sbjct: 372 MFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKSEVHDTKLGPNRTMV 431
Query: 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDI 489
F NTVDA +V+ IL+ G+ C YH+D SLEERAK L +F+E GGV VCTDAAARG+D+
Sbjct: 432 FTNTVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQSFRENGGVLVCTDAAARGLDV 491
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
PNVSHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A +L QPV
Sbjct: 492 PNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEELAQPV 550
>gi|242044594|ref|XP_002460168.1| hypothetical protein SORBIDRAFT_02g023840 [Sorghum bicolor]
gi|241923545|gb|EER96689.1| hypothetical protein SORBIDRAFT_02g023840 [Sorghum bicolor]
Length = 576
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 289/486 (59%), Positives = 355/486 (73%), Gaps = 16/486 (3%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
+GS++ FFA+ + +W SLG+S+RL AL +G RPS+VQA + VL DV++AAETG
Sbjct: 71 SGSANGFFAE-STSWGSLGVSERLASALRGAGLSRPSLVQATCIPHVLMENDVIVAAETG 129
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
SGKTH YLVPLIEKLC+ +++ NS LVLCPNV+LCEQVVRMAN+L
Sbjct: 130 SGKTHGYLVPLIEKLCSKSSTTKDDNSQDTTPGAHDIVLVLCPNVMLCEQVVRMANSLLD 189
Query: 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFD 248
++GEPL A AVCG +GWP PD++V+TPAALLN + DP++RRR F+R VK+VVFD
Sbjct: 190 ESGEPLKSAAAVCGPKGWPAVHPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFVVFD 249
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE-NLQ 307
EADMLLCGSF+NQVIRLI+M RFDEK LSR +SG E L D+ L + E +
Sbjct: 250 EADMLLCGSFENQVIRLIHMLRFDEKLLSRAQDSGKEVSLGSDDGYLEDSRFETAEFSGS 309
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKT 367
DE I D N D V+ E + G+ +KDWRRVRK Y+RSKQY+FVAATLP +GK+T
Sbjct: 310 DEEIED--NIVQDRPVK--VENSHVGA--RKDWRRVRKIYRRSKQYVFVAATLPQSGKRT 363
Query: 368 AGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-- 425
AG VLK+MFPDA W+SG YLH HNPRL+ +WIEVT DTQVDAL+ AVK L+ +
Sbjct: 364 AGGVLKRMFPDAVWVSGTYLHCHNPRLERRWIEVTADTQVDALLNAVKYGLKSEVHDAKD 423
Query: 426 ---RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA 482
RTMVF NTVDA +V+ IL+ GI C YH++ SLEERA L +F+E GGV VCTDA
Sbjct: 424 VRRRTMVFTNTVDAANSVSDILRRVGIPCILYHRESSLEERANNLQSFRENGGVLVCTDA 483
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
AARG+D+PNVSHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A
Sbjct: 484 AARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAE 543
Query: 543 KLGQPV 548
+L QPV
Sbjct: 544 ELAQPV 549
>gi|357158260|ref|XP_003578069.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 22-like
[Brachypodium distachyon]
Length = 569
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/491 (58%), Positives = 355/491 (72%), Gaps = 39/491 (7%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FFA+++ +WKSLG+SDR+I AL + RPS+VQAA + VL+ DV++AAETGSGKTH
Sbjct: 70 FFAENSTSWKSLGISDRIISALHGADLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 129
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YL+PLIEKLC+ +E+ + LVLCPNV+LCEQVV MAN+L +GEPL
Sbjct: 130 YLIPLIEKLCSKSSSTEDVDPQNIAMGTHDIVLVLCPNVMLCEQVVSMANSLLDVSGEPL 189
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
RA AVCG +GWP +PD++V+TPAALLN + DP+RRRR F+R VK++VFDEADMLL
Sbjct: 190 KRAAAVCGPKGWPAVRPDILVATPAALLNYLFDYDPERRRREIFLRSVKFIVFDEADMLL 249
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314
CGSF+NQVIRLI+M RFDEK LSR +S E PLE DEY D
Sbjct: 250 CGSFENQVIRLIDMLRFDEKLLSRAQDSEKEVPLEG----------------SDEYHEDS 293
Query: 315 GNFEGD-SDVEGLTEETKSGSI-------------KKKDWRRVRKNYQRSKQYIFVAATL 360
G+ + SDV+ EE + G I ++KDWRRVRK Y+RSKQY+FVAATL
Sbjct: 294 GSESAEFSDVD---EENEGGHIQDSAVEVENAHVERRKDWRRVRKIYRRSKQYVFVAATL 350
Query: 361 PINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF 420
P +GKKTAG VLK+MFP A W+SG+YLH HNPRL+ +WIEVT DTQVDAL++AVK L+
Sbjct: 351 PQSGKKTAGGVLKRMFPSAVWVSGSYLHRHNPRLERRWIEVTGDTQVDALLDAVKYGLKS 410
Query: 421 GAET---SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF 477
+ +RTMVFANTVDA +V+ IL+ GI C YH++ SLEER L +F+E GGV
Sbjct: 411 EVDQLGPNRTMVFANTVDAANSVSDILRRVGIPCILYHRESSLEERTNNLKSFRENGGVL 470
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
VCTDAAARG+D+PNVSHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYT++NRDLV
Sbjct: 471 VCTDAAARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTDANRDLVRA 530
Query: 538 IRRAAKLGQPV 548
+R+A +L QPV
Sbjct: 531 VRQAEQLAQPV 541
>gi|414885286|tpg|DAA61300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 574
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/485 (58%), Positives = 349/485 (71%), Gaps = 14/485 (2%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
+GS + FFA+ + +W SLG+S+RL AL ++G RPS+VQA + VL DV++AAETG
Sbjct: 69 SGSGNEFFAE-STSWASLGVSERLASALCSAGLSRPSLVQATCIPHVLMANDVIVAAETG 127
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
SGKTH YLVPLIEKLC+ +++ N LVLCPNV+LCEQVVRMAN+L
Sbjct: 128 SGKTHGYLVPLIEKLCSKSSTTKDDNCQDTTPGAHDMVLVLCPNVMLCEQVVRMANSLLD 187
Query: 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFD 248
++G+PL RA AVCG GWP PD++V+TPAALLN + DP++RRR F+R VK+VVFD
Sbjct: 188 ESGKPLKRAAAVCGPNGWPAVHPDILVATPAALLNYLFDYDPEKRRRERFMRNVKFVVFD 247
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EADMLLCGSF+NQVIRLINM RFDEK LSR +SG + L D+ +D +
Sbjct: 248 EADMLLCGSFENQVIRLINMLRFDEKLLSRAQDSGKDISLGSDDEY-----HEDSKFETA 302
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
E+ S + E + + L + S KDWRRVRK Y+RSKQY+FVAATLP +GKKTA
Sbjct: 303 EFGSSDKEIEDNIVEDRLVKLENSHVGAHKDWRRVRKIYRRSKQYVFVAATLPQSGKKTA 362
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS--- 425
G VL++MFPDA W+SG YLH HNPRL+ +WIEVT DTQVDAL+ AVK L+ +
Sbjct: 363 GGVLQRMFPDAVWVSGTYLHRHNPRLERRWIEVTADTQVDALLNAVKYGLKSEVHDAKDV 422
Query: 426 --RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA 483
RTMVF NTVDA +V+ IL GI C YH++ SL+ERA L +F+E GGV VCTDAA
Sbjct: 423 PRRTMVFTNTVDAANSVSDILHRVGIPCILYHRESSLKERANNLQSFRENGGVLVCTDAA 482
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
ARG+D+PNVSHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A +
Sbjct: 483 ARGLDVPNVSHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEE 542
Query: 544 LGQPV 548
L QPV
Sbjct: 543 LAQPV 547
>gi|222641491|gb|EEE69623.1| hypothetical protein OsJ_29203 [Oryza sativa Japonica Group]
Length = 536
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/476 (56%), Positives = 322/476 (67%), Gaps = 47/476 (9%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FF++++ +W+SLG+SDRL AL +G RPS+VQAA + VL+ DV++AAETGSGKTH
Sbjct: 76 FFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 135
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL
Sbjct: 136 YLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPL 195
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
A AVCG PK VFDEADMLLCGS
Sbjct: 196 KSAAAVCG------------------------PK--------------VFDEADMLLCGS 217
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317
F+NQVIRLI+M RFDEK LSRM +SG E L N D Q E D DE N
Sbjct: 218 FENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQSAELSAD----DEENE 273
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP 377
+G + E KKDWRRVRK Y+RSKQY+FVAATLP +GKKTAG VLK+MFP
Sbjct: 274 DGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLKRMFP 333
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-----RTMVFAN 432
+A W+SG YLH HNPRL+ +WIEVT DTQV AL++AVK L+ + RTMVF N
Sbjct: 334 NAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTMVFTN 393
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNV 492
TVDA +V+ IL+ G+ C YH+D SLEERAK L +F+E GGV VCTDAAARG+D+PNV
Sbjct: 394 TVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQSFRENGGVLVCTDAAARGLDVPNV 453
Query: 493 SHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
SHVIQA+FA AVDFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A +L QPV
Sbjct: 454 SHVIQAEFAACAVDFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEELAQPV 509
>gi|297609402|ref|NP_001063067.2| Os09g0383400 [Oryza sativa Japonica Group]
gi|255678863|dbj|BAF24981.2| Os09g0383400, partial [Oryza sativa Japonica Group]
Length = 498
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/428 (58%), Positives = 309/428 (72%), Gaps = 12/428 (2%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FF++++ +W+SLG+SDRL AL +G RPS+VQAA + VL+ DV++AAETGSGKTH
Sbjct: 74 FFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 133
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL
Sbjct: 134 YLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPL 193
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
A AVCG +GWP +PD++V+TPAALLN + DP++RRR F+R VK++VFDEADMLL
Sbjct: 194 KSAAAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLL 253
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314
CGSF+NQVIRLI+M RFDEK LSRM +SG E L N D Q E D DE
Sbjct: 254 CGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQSAELSAD----DE 309
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ 374
N +G + E KKDWRRVRK Y+RSKQY+FVAATLP +GKKTAG VLK+
Sbjct: 310 ENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGVLKR 369
Query: 375 MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-----RTMV 429
MFP+A W+SG YLH HNPRL+ +WIEVT DTQV AL++AVK L+ + RTMV
Sbjct: 370 MFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTMV 429
Query: 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDI 489
F NTVDA +V+ IL+ G+ C YH+D SLEERAK L +F+E GGV VCTDAAARG+D+
Sbjct: 430 FTNTVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQSFRENGGVLVCTDAAARGLDV 489
Query: 490 PNVSHVIQ 497
PNVSHVIQ
Sbjct: 490 PNVSHVIQ 497
>gi|168018976|ref|XP_001762021.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686738|gb|EDQ73125.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 602
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/515 (46%), Positives = 332/515 (64%), Gaps = 29/515 (5%)
Query: 59 RGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV 118
R F+A+ + F+A+ +TW+SLGL ++ AL +G PS+VQAA++ +
Sbjct: 59 RRFSASGIRAEGGGEDAGGFWAEKGITWRSLGLDGEVVGALMRAGLPHPSLVQAAAIPSI 118
Query: 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP----PRAPSLVLCP 174
L DVV+AAETGSGKTH+YL PL++K+ A DKE +P LVLCP
Sbjct: 119 LGTGDVVVAAETGSGKTHTYLAPLVQKMWKAGASGIEDAEDKEKSPFEGLGFGLGLVLCP 178
Query: 175 NVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNI---DPK 231
N +LC QVV MANAL ++G+PLVR + GGQGWP PDV+V+TPAALLNN+ D
Sbjct: 179 NALLCHQVVDMANALRGEDGQPLVRVDMISGGQGWPTYLPDVVVATPAALLNNLFGFDAN 238
Query: 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNE--SGVEKPLE 289
RRRR+ FV+ V+ VVFDEADMLL G F V RLI++FR +EK++S++ E + VE +E
Sbjct: 239 RRRRIAFVKAVRMVVFDEADMLLGGGFVRDVGRLIDLFRLEEKRISKLRELEASVETKIE 298
Query: 290 MDNSSL----TQPDLQDE--------ENLQDEYISDEGN---FEGDSDVEGLTEETKSGS 334
++ + Q+E E E + + GN FE + E +S S
Sbjct: 299 FKEPEFRRVWSEAEGQEEAGDVAEEVEREAQEIVDESGNSLLFEQRAQ-ESTASSGQSAS 357
Query: 335 IKKK-DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393
++++ +W R RK Y+RSKQYIFVAATLP GK + GAVLKQ FP W+ GN+LH HNP
Sbjct: 358 MQRRSEWLRNRKEYKRSKQYIFVAATLPQAGKSSPGAVLKQKFPAMTWVHGNFLHRHNPM 417
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
L+ +W+ V D L+ + + L +RT+VFAN+V+ V A+ ++L G++C
Sbjct: 418 LEHRWVHVNKDNN---LLSVLTDALRESRSNARTLVFANSVEGVDAIARVLDQCGLKCMR 474
Query: 454 YHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
YH+DLS+E++A L +F+E+GG +CTDAAARG+DIPN++HVIQA+FATSAVDF+HR+GR
Sbjct: 475 YHRDLSVEDKAAALSSFEEEGGTLICTDAAARGLDIPNITHVIQAEFATSAVDFIHRIGR 534
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
TARAGQ G VTS+YT++N LV+ +R A PV
Sbjct: 535 TARAGQPGFVTSIYTDANLTLVNAMRDAMTAAIPV 569
>gi|302768249|ref|XP_002967544.1| hypothetical protein SELMODRAFT_11301 [Selaginella moellendorffii]
gi|300164282|gb|EFJ30891.1| hypothetical protein SELMODRAFT_11301 [Selaginella moellendorffii]
Length = 498
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/488 (46%), Positives = 316/488 (64%), Gaps = 25/488 (5%)
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
+F A+ V+W SLGLS + +A +GF RPS +Q A++ +L G DV++AAETGSGKTH
Sbjct: 3 SFHAEPGVSWISLGLSGEISQAAMKAGFDRPSTIQGAAIPRILEGGDVILAAETGSGKTH 62
Query: 137 SYLVPLIEKLCTALGD-SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195
+YL+P+ + L + + E D+ PR+ +LVLCPN LC+Q MA + + G+
Sbjct: 63 AYLLPIFQLLAKSNQEFKEKKAEDENAYIPRSFALVLCPNATLCQQAAEMATKVCSKLGD 122
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNI---DPKRRRRMEFVRGVKYVVFDEADM 252
VR + GGQGWP PD + +TP AL+N++ DPK++RR F+R +YVVFDEADM
Sbjct: 123 -FVRVAVITGGQGWPTSPPDFVFATPGALINHLFSFDPKQKRRTAFLRDARYVVFDEADM 181
Query: 253 LLCGSFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311
LL G F+ QVI RLI + R EK+L+ E ++KP T+P E + ++E+
Sbjct: 182 LLSGGFERQVIQRLIPLLRLAEKKLA-AEEKAIQKPGSEQKKEETKPWTDFEPSKEEEFE 240
Query: 312 SDEGNFEGDSDVEGLTEETKSGSIKKKD------WRRVRKNYQRSKQYIFVAATLPINGK 365
SD GDSD+E E KSG +K D + RK Y+RSKQYIFVAATLP+ GK
Sbjct: 241 SD-----GDSDME--KEIAKSGGDEKGDDTTKKKRKTYRKKYKRSKQYIFVAATLPVVGK 293
Query: 366 KTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS 425
KT +L FPDA W++G++LH P +K +WIEV +V+AL++A+ R E +
Sbjct: 294 KTPAIMLSYQFPDATWVNGDFLHRQIPSVKHQWIEVDSKKRVEALLKAIAARPEVNEAGT 353
Query: 426 -----RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT 480
RTMVFANT+++V A++KIL+ I CYH+D+ LEER L FQ++GG+ +CT
Sbjct: 354 PPSFMRTMVFANTIESVTAISKILEKVNIVPLCYHRDIPLEERTSNLKRFQDEGGILLCT 413
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D+ ARG+DI ++ H++QA+FA +AVD+LHRVGRT RAG G+VTSLYTES++ L + +R
Sbjct: 414 DSGARGLDIRDIGHIVQAEFALNAVDYLHRVGRTGRAGNTGVVTSLYTESSKPLANAVRI 473
Query: 541 AAKLGQPV 548
A GQPV
Sbjct: 474 AISDGQPV 481
>gi|302800084|ref|XP_002981800.1| hypothetical protein SELMODRAFT_11263 [Selaginella moellendorffii]
gi|300150632|gb|EFJ17282.1| hypothetical protein SELMODRAFT_11263 [Selaginella moellendorffii]
Length = 499
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 229/489 (46%), Positives = 317/489 (64%), Gaps = 26/489 (5%)
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
+F A+ V+W SLGLS + +A +GF RPS +Q A++ +L G DV++AAETGSGKTH
Sbjct: 3 SFHAEPGVSWISLGLSGEISQAAMKAGFDRPSAIQGAAIPRILEGGDVILAAETGSGKTH 62
Query: 137 SYLVPLIEKLCTALGD-SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195
+YL+P+ + L + + E D+ PR+ +LVLCPN LC+Q MA + + G+
Sbjct: 63 AYLLPIFQLLAKSNEEFKEKKAEDENAYIPRSFALVLCPNATLCQQAAEMATKVCSKLGD 122
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNI---DPKRRRRMEFVRGVKYVVFDEADM 252
VR + GGQGWP PD + +TP AL+N++ DPK++RR F+R +YVVFDEADM
Sbjct: 123 -FVRVAVITGGQGWPTSPPDFVFATPGALINHLFSFDPKQKRRTAFLRDARYVVFDEADM 181
Query: 253 LLCGSFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311
LL G F+ QV RLI + R EK+L+ E ++KP T+P E + ++E+
Sbjct: 182 LLSGGFERQVTQRLIPLLRLAEKKLA-AEEKAIQKPGSEQKKEETKPWTDFEPSKEEEFE 240
Query: 312 SDEGNFEGDSDVEGLTEETKSGSIKKKD------WRRVRKNYQRSKQYIFVAATLPINGK 365
SD GDSD+E E KSG +K D + RK Y+RSKQYIFVAATLP+ GK
Sbjct: 241 SD-----GDSDME--KEIAKSGGDEKGDDTTKKKRKTYRKKYKRSKQYIFVAATLPVVGK 293
Query: 366 KTAGAVLKQMFPDADWISGNYLHFHNPR-LKEKWIEVTVDTQVDALIEAVKERLEF---G 421
KT +L FPDA W++G++LH PR +K +WIEV +V+AL++A+ R E G
Sbjct: 294 KTPAIMLSYQFPDATWVNGDFLHRQIPRYVKHQWIEVDSKKRVEALLKAIAARPEVNEAG 353
Query: 422 AETS--RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVC 479
S RTMVFANT+++V A++KIL+ I CYH+D+ LEER L FQ++GG+ +C
Sbjct: 354 PPPSFMRTMVFANTIESVTAISKILEKVNIVPLCYHRDIPLEERTSNLKRFQDEGGILLC 413
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
TD+ ARG+DI ++ H++QA+FA +AVD+LHRVGRT RAG G+VTSLYTES++ L D +R
Sbjct: 414 TDSGARGLDIRDIGHIVQAEFALNAVDYLHRVGRTGRAGNTGVVTSLYTESSKPLADAVR 473
Query: 540 RAAKLGQPV 548
A GQPV
Sbjct: 474 IAISDGQPV 482
>gi|49387654|dbj|BAD25848.1| putative RNA helicase RH22 [Oryza sativa Japonica Group]
Length = 326
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/329 (59%), Positives = 237/329 (72%), Gaps = 12/329 (3%)
Query: 177 VLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRR 233
+LCEQVVRMAN+L ++GEPL A AVCG +GWP +PD++V+TPAALLN + DP++R
Sbjct: 1 MLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKR 60
Query: 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNS 293
RR F+R VK++VFDEADMLLCGSF+NQVIRLI+M RFDEK LSRM +SG E L N
Sbjct: 61 RRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNE 120
Query: 294 SLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQY 353
D Q E D DE N +G + E KKDWRRVRK Y+RSKQY
Sbjct: 121 YREDSDSQSAELSAD----DEENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQY 176
Query: 354 IFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEA 413
+FVAATLP +GKKTAG VLK+MFP+A W+SG YLH HNPRL+ +WIEVT DTQV AL++A
Sbjct: 177 VFVAATLPQSGKKTAGGVLKRMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDA 236
Query: 414 VKERLEFGAETS-----RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
VK L+ + RTMVF NTVDA +V+ IL+ G+ C YH+D SLEERAK L
Sbjct: 237 VKYGLKNEVHDTKLGPNRTMVFTNTVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQ 296
Query: 469 NFQEKGGVFVCTDAAARGIDIPNVSHVIQ 497
+F+E GGV VCTDAAARG+D+PNVSHVIQ
Sbjct: 297 SFRENGGVLVCTDAAARGLDVPNVSHVIQ 325
>gi|414885285|tpg|DAA61299.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 664
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 213/473 (45%), Positives = 278/473 (58%), Gaps = 49/473 (10%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
+GS + FFA+ + +W SLG+S+RL AL ++G RPS+VQA + VL DV++AAETG
Sbjct: 69 SGSGNEFFAE-STSWASLGVSERLASALCSAGLSRPSLVQATCIPHVLMANDVIVAAETG 127
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
SGKTH YLVPLIEKLC+ +++ N LVLCPNV+LCEQVVRMAN+L
Sbjct: 128 SGKTHGYLVPLIEKLCSKSSTTKDDNCQDTTPGAHDMVLVLCPNVMLCEQVVRMANSLLD 187
Query: 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLN---NIDPKRRRRMEFVRGVKYVVFD 248
++G+PL RA AVCG GWP PD++V+TPAALLN + DP++RRR F+R VK+VVFD
Sbjct: 188 ESGKPLKRAAAVCGPNGWPAVHPDILVATPAALLNYLFDYDPEKRRRERFMRNVKFVVFD 247
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EADMLLCGSF+NQVIRLINM RFDEK LSR +SG + L D+ +D +
Sbjct: 248 EADMLLCGSFENQVIRLINMLRFDEKLLSRAQDSGKDISLGSDDEY-----HEDSKFETA 302
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
E+ S + E + + L + S KDWRRVRK Y+RSKQY+FVAATLP +GKKTA
Sbjct: 303 EFGSSDKEIEDNIVEDRLVKLENSHVGAHKDWRRVRKIYRRSKQYVFVAATLPQSGKKTA 362
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWI-----EVTVDTQVDAL------------- 410
G VL++MFPDA W+SG YLH HNPR ++ + V VD+ D +
Sbjct: 363 GGVLQRMFPDAVWVSGTYLHRHNPRSVKESVGSAPDSVPVDSNTDPMADPKRRAKSCKTV 422
Query: 411 ----IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER--- 463
I+ +K+ L G A+T+ T+I K ++ Y K+ LE R
Sbjct: 423 TTGGIKRLKKHLAGG--------HADTLMCSKTTTEIRKE--MKAY-LDKNKRLERRWIE 471
Query: 464 --AKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVI--QADFATSAVDFLHRVG 512
A T V+ + D+P + V D A S D LHRVG
Sbjct: 472 VTADTQVDALLNAVKYGLKSEVHDAKDVPRRTMVFTNTVDAANSVSDILHRVG 524
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/163 (63%), Positives = 124/163 (76%), Gaps = 5/163 (3%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS-----RTMVFANTVDAVYAVTKILK 445
N RL+ +WIEVT DTQVDAL+ AVK L+ + RTMVF NTVDA +V+ IL
Sbjct: 462 NKRLERRWIEVTADTQVDALLNAVKYGLKSEVHDAKDVPRRTMVFTNTVDAANSVSDILH 521
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
GI C YH++ SL+ERA L +F+E GGV VCTDAAARG+D+PNVSHVIQA+FA AV
Sbjct: 522 RVGIPCILYHRESSLKERANNLQSFRENGGVLVCTDAAARGLDVPNVSHVIQAEFAACAV 581
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
DFLHRVGRTARAGQ G+VTSLYTE+NRDLV +R+A +L QPV
Sbjct: 582 DFLHRVGRTARAGQSGIVTSLYTEANRDLVRAVRQAEELAQPV 624
>gi|384251289|gb|EIE24767.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Coccomyxa subellipsoidea C-169]
Length = 478
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 260/481 (54%), Gaps = 31/481 (6%)
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
+FFA + + SLGL L+ AL+ +G+ RPS VQ S P+LSG+ +V+AAETGSGKT
Sbjct: 4 SFFASEETNFASLGLQTSLVDALQGAGYDRPSTVQELSAPPILSGRSLVLAAETGSGKTM 63
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGE 195
+YL PLI + + G ++ ++ + A LVLCPN LC QVV A++L +G
Sbjct: 64 AYLAPLISSILS--GKAQEADVQSTSSEGAADGILVLCPNAALCSQVVAFADSLKGPSGA 121
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRR------RRMEFVRGVKYVVFDE 249
PLVR+ + P PD++ +TPA L+ + + V +++VV DE
Sbjct: 122 PLVRSAHISSAAPLPRDMPDIVAATPAGLMAATQEYGQYAGWHWTKAGIVTRIRHVVLDE 181
Query: 250 ADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
AD+LL G FQ V R+++ R ++ S V + L + +L +L+
Sbjct: 182 ADLLLTGGFQRDVRRILDALREGDRA---QRSSAVARQLGVSGDALAAL----PRHLRKA 234
Query: 310 YISDEGNFEGDSDVEGLTEETKSGSI-KKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
+ T+ G + ++ W+R QY+FVAAT+P +T
Sbjct: 235 AAQGVPAMHTCTVHHTPTDTLMRGCVGTRRTWKR---------QYLFVAATMPSGAGQTV 285
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
L ++FPD W+SG LH R+ W+ +T D+ +L + E G RT+
Sbjct: 286 AGDLGRLFPDLLWLSGPSLHEAQRRVAHTWLPITQDSWRSSL--QARSLGEVG--QGRTL 341
Query: 429 VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGI 487
VFA V A V +L G++ YH+++S ++RA L + +GGV VCTDAAARGI
Sbjct: 342 VFAANVAAANEVATVLADVGLQPLLYHREVSPQDRAGALDAMRAGEGGVLVCTDAAARGI 401
Query: 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
DIP+V+HV+Q+ FA SA+DFLHRVGRT RAG+ G VTSLY ++ L + I+ A G+P
Sbjct: 402 DIPDVTHVVQSSFAASAIDFLHRVGRTGRAGKVGRVTSLYMPNHAVLAEAIKAAVDAGEP 461
Query: 548 V 548
V
Sbjct: 462 V 462
>gi|2326359|emb|CAA72075.1| hypothetical protein [Arabidopsis thaliana]
Length = 205
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/199 (64%), Positives = 155/199 (77%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D V+WKSLGLSD + AL +SGF RPS+ QA + +LSGKDV++AAETGSGKTH YL
Sbjct: 7 DHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLA 66
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+I++L DSE +N ++ P P + SL+LCPNV+LCEQVVRM N L ++G PL+R
Sbjct: 67 PIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRV 126
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
AVCG QGWP PD+IVSTPAALLNNI+PKR RR+EF+R VKYVVFDEADMLLCGSFQN
Sbjct: 127 EAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQN 186
Query: 261 QVIRLINMFRFDEKQLSRM 279
Q+IRL M RFDEKQ R+
Sbjct: 187 QIIRLXXMLRFDEKQXXRL 205
>gi|145354763|ref|XP_001421646.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581884|gb|ABO99939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 560
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 183/484 (37%), Positives = 253/484 (52%), Gaps = 75/484 (15%)
Query: 98 ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157
AL+N GF + +QAA+V DVVIAAETGSGKT SYL+P+ L + +
Sbjct: 82 ALKNLGFETLTEIQAAAVPAAAENSDVVIAAETGSGKTLSYLIPIWSNLLERGVGGRDDD 141
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-NGEPLVRAVAVCGGQGWPIGKPDV 216
T +L+LCPN LCEQV R+AN+L + GEPL+R A+ G P PDV
Sbjct: 142 DGSRETG----ALILCPNATLCEQVARVANSLVDEGTGEPLLRTYALTPETGTPFHAPDV 197
Query: 217 IVSTPAALLNNIDPKRR---RRMEF---VRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270
V+TPA ++++ R RR F R +++VVFDEADML G
Sbjct: 198 YVTTPARAVDDLLRFREGAWRRGSFSPTARTLRHVVFDEADMLFSG-------------- 243
Query: 271 FDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE--YISDEGNFEGDSDVEGLTE 328
G KPL M L + EE L E Y+ GN + ++ +G +
Sbjct: 244 ------------GYLKPLRMCFDVLYR-----EEKLASEGFYLPGTGNEDAAAEWDGDVD 286
Query: 329 ETKSGSIKKKDWRR---------------------VRKNYQRSKQYIFVAATLPINGKKT 367
+ S ++DWR+ ++++R QYIF AAT+ NGKKT
Sbjct: 287 --RDASSFERDWRKDHDGPRKRGPALGGKGKVGLGDGRDFRR--QYIFAAATVMSNGKKT 342
Query: 368 AGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRT 427
GA++K FPDA WI G LH + + W+E T++T+ AL +AV GA +T
Sbjct: 343 PGAMIKYGFPDAKWIEGRRLHRSVESVNQTWVEATLETRAMALADAVG-LTSAGASAEKT 401
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVCTDAAA 484
M+F NT A + + G+ +H D++ ERA L +F + GV VCTD+AA
Sbjct: 402 MIFVNTAAAADEIAREFNALGLRAAAFHADMASHERAMRLKDFAD--GVITALVCTDSAA 459
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RG+DIP V+HV+QA+FA +AVD+LHR+GRTARAG G VT++ + DLV +R A
Sbjct: 460 RGVDIPGVTHVVQAEFAGNAVDYLHRIGRTARAGATGRVTNICLPGSADLVRAVRDAEAN 519
Query: 545 GQPV 548
G PV
Sbjct: 520 GDPV 523
>gi|302850851|ref|XP_002956951.1| hypothetical protein VOLCADRAFT_98000 [Volvox carteri f.
nagariensis]
gi|300257669|gb|EFJ41914.1| hypothetical protein VOLCADRAFT_98000 [Volvox carteri f.
nagariensis]
Length = 618
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 185/544 (34%), Positives = 269/544 (49%), Gaps = 75/544 (13%)
Query: 57 PFRGFAAAA-------------AVVSDKNGSSDT-FFADDNVTWKSLGLSDRLIRALENS 102
P RGFAAAA AV ++ + S DT F++D ++ L +S L AL S
Sbjct: 14 PTRGFAAAAKKRINKLPRLEAVAVAAETSSSGDTTFYSDTQQSFAELEVSPVLQEALAAS 73
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE-------- 154
GF RPS +Q + +L G++VVI AETGSGKT SY++P+ + E
Sbjct: 74 GFSRPSKIQELTAPHILRGRNVVITAETGSGKTLSYVIPIAHLMLKQRAALERHQQQQLQ 133
Query: 155 ----------NSNSDKEP------TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ +D P TP R +LVLCPN LC+QVV N L +GE L+
Sbjct: 134 EPQPQQNLPDTAPTDPAPRDRSSATPRRYHALVLCPNAALCQQVVATVNGLQGPDGEQLL 193
Query: 199 RAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPK--------RRRRMEFVRGVKYVVFDEA 250
A + P PDVIV+TPA LL I+ M+ V++VV DEA
Sbjct: 194 TAAHINSSNPPPFDAPDVIVATPAGLLTIINDAGGAYGWLWSEEGMQAR--VRHVVVDEA 251
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310
D+LL ++ R++ +F+ ++ R E+ + + L + + S D D +
Sbjct: 252 DLLLGNAYIKATERILTLFKVADR---RRVEAKILEELGLADKS----DF-DRLPRAIKV 303
Query: 311 ISDEGNF-----EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGK 365
+G EG L E K G WRR QYI AAT+P
Sbjct: 304 AGWQGGVPAMLAEGYRPKRALNPEAKYGPY----WRR---------QYILSAATMPTITY 350
Query: 366 KTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS 425
G+ +++M+ DA W+S LH P++ W EV+ ++ L++ V+ ++ A
Sbjct: 351 SDVGSQIQKMYSDAVWVSTELLHVSKPQVAHAWREVSEESFGVTLLDVVRSDPDYQARRG 410
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAA 484
+T++FA + AV+++L + YHK E++ L Q+ G V VCTDAAA
Sbjct: 411 KTLIFAADGASADAVSELLHGGQVPHVVYHKSRPKPEQSAALQALRQQDGTVMVCTDAAA 470
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RG+D+ ++HV+QADFA + +DFLHR+GRTARAG G TSLY E NR LV+ IR+
Sbjct: 471 RGLDVQGITHVVQADFAPNTIDFLHRIGRTARAGNSGRATSLYREHNRALVEVIRKYIAE 530
Query: 545 GQPV 548
G P+
Sbjct: 531 GIPL 534
>gi|308812806|ref|XP_003083710.1| Identical to gb|AJ010471 mRNA for DEAD box RNA helicase (ISS)
[Ostreococcus tauri]
gi|116055591|emb|CAL58259.1| Identical to gb|AJ010471 mRNA for DEAD box RNA helicase (ISS)
[Ostreococcus tauri]
Length = 498
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 170/463 (36%), Positives = 241/463 (52%), Gaps = 64/463 (13%)
Query: 94 RLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153
R+ AL+ GF + +QA ++ + G DVVIAAETGSGKT SYLVP+ + L
Sbjct: 55 RVRWALKKLGFATLTEIQADAIPAAMDGVDVVIAAETGSGKTLSYLVPIWDNLLRVSDRG 114
Query: 154 ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN-GEPLVRAVAVCGGQGWPIG 212
E + D+E R +L+LCPN LCEQV R+A++L ++ GEPL+R A+ G P
Sbjct: 115 EGA--DEENGGRRTGALILCPNATLCEQVTRVADSLVDESTGEPLLRTHALTPETGTPFN 172
Query: 213 KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272
PDV V+TPA R V+ ++ GSF + + +++ D
Sbjct: 173 PPDVYVTTPA-----------------RAVEDLLHHREGAWRRGSFASTARTVRHVWDGD 215
Query: 273 EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332
++ +E+ E+ D+ + P + +G GL E
Sbjct: 216 AER----DEASFERDWRKDHDA---PRASQGRRTPGPALGGKGRV-------GLGE---- 257
Query: 333 GSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP 392
+D+RR QYIF AAT+ NGKKT GA++K FPDA WI G LH
Sbjct: 258 ----GRDFRR---------QYIFAAATVMSNGKKTPGAMIKYGFPDARWIEGRRLHRSVA 304
Query: 393 RLKEKWIEVTVDTQVDALIEAV----KERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
+ + WIE T++T+ AL EAV E+ EF +TMVF NT A + + G
Sbjct: 305 SVNQTWIEATMETRAQALAEAVGLTSSEKTEF----EKTMVFVNTAAAADEIAREFNALG 360
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAV 505
+ +H D+S +R L +F GV VCTD+AARG+D+P V+HV+QA+FA +AV
Sbjct: 361 LPSAAFHADMSSHDRGVRLQDF--AAGVVSALVCTDSAARGVDVPGVAHVVQAEFAGNAV 418
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D+LHR+GRTARAG G VT++ + DLV +R A G+PV
Sbjct: 419 DYLHRIGRTARAGAAGRVTNICLPTTADLVRAVRDAEAKGEPV 461
>gi|159490778|ref|XP_001703350.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280274|gb|EDP06032.1| predicted protein [Chlamydomonas reinhardtii]
Length = 556
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 235/457 (51%), Gaps = 58/457 (12%)
Query: 118 VLSGKDVVIAAETGSGKTHSYLVP---LIEKLCTALGD--------SENSNSDKEPTPPR 166
+L G++VV+AAETGSGKT SYLVP L+ K TA+ ++ + P R
Sbjct: 22 ILRGRNVVVAAETGSGKTLSYLVPIAHLMLKQRTAMQQHAAALEAAGPAADGAERPRFTR 81
Query: 167 APSLVLCPNVVLCEQVVRMANAL---SADNGEP-------LVRAVAVCGGQGWPIGKPDV 216
+LVLCPNV LC+QV NAL +A +G LV A + P PDV
Sbjct: 82 YLALVLCPNVALCQQVAAAVNALRGPAAADGSSQQQQQQQLVSAAVINSSNPPPFETPDV 141
Query: 217 IVSTPAALLNNIDPK--------RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
+V+TPA LLN ID M+ +++VV DEAD+LL ++ R++ +
Sbjct: 142 VVATPAGLLNIIDDAGGAYGWLWSEEGMQ--ARIRHVVLDEADLLLTPAYSRATQRILTL 199
Query: 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF-----EGDSDV 323
F+ +++ VE L D L D D + + G EG
Sbjct: 200 FKTADRRR-------VEAKL-FDELGLAGKDEFDRLPRALQVAAWTGGAPAMLAEGYRPK 251
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
L + K G WRR QYI+ AATLP G+ + + PDA W+S
Sbjct: 252 RSLNPDAKYGPY----WRR---------QYIYSAATLPAATYSDVGSAIAKAHPDAVWVS 298
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
+ LH P+++ W EV D L++++K ++ A + +T+VFA + A +++
Sbjct: 299 TDLLHSSKPQVEHAWREVRDDDFTTNLLDSIKSDPDYQARSGKTLVFAADGASADAASEV 358
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFAT 502
L + YHK + E+A L +E+ G V VCTDAAARG+D+ ++ HV+QADFA
Sbjct: 359 LAGGNVPHVVYHKSRPMGEQAAALATLREQPGCVMVCTDAAARGLDVEDIKHVVQADFAA 418
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+A+DF+HR+GRTARAG+ G VTSLY E NR LV+ ++
Sbjct: 419 NAIDFIHRIGRTARAGRGGRVTSLYREHNRALVEVLQ 455
>gi|303288477|ref|XP_003063527.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455359|gb|EEH52663.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 598
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 183/522 (35%), Positives = 257/522 (49%), Gaps = 94/522 (18%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT--ALGD 152
+ RAL GF + QAA++ + + DVV+AAETGSGKT +YL P+I L A+G
Sbjct: 75 VARALSALGFDDATTTQAAAIPSIAANDDVVLAAETGSGKTFAYLAPIISNLTARNAVGV 134
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQGWPI 211
R +L+LCPN LC QV A++L AD PLVR VA+
Sbjct: 135 G------------RVGALILCPNATLCAQVAAAADSLRRADGATPLVRTVALTPNAMLDD 182
Query: 212 GK-PDVIVSTPAALLNNI---DPKRRRRMEF---VRGVKYVVFDEADMLLCGSFQNQVIR 264
PDV+V+TPA ++ + RR F V +++VVFDEAD LL G + V
Sbjct: 183 RNLPDVVVATPARAAADVLRFNDGGWRRGNFHPAVVHIRHVVFDEADALLSGGYLRAVRG 242
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
++ + E++L+ + G+ P P D+ ++ SD G+ D D
Sbjct: 243 CFDVL-YREEKLAAL---GLTAP----------PASDDDADVASADSSDLGDVAADRDSA 288
Query: 325 GLTEETK-SGSIKK------KDWRRVRKN----------------YQRS----------- 350
+T + +G K+ KDWR + Y R
Sbjct: 289 DVTADPGWTGDAKRNDAAYEKDWRDDHDDVGGGGGGRDRDRRPRGYHRGPALGGKGLVGS 348
Query: 351 -------KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV 403
+QY+F AAT+ NGKKT GA+++ FPDA W+ G LH R+ ++WI V
Sbjct: 349 GAGRDFRRQYVFAAATVMSNGKKTPGAIIRHGFPDARWVQGKRLHMAVERVTQEWISVDD 408
Query: 404 DTQVDALIEAVKERLEFGAET---------------SRTMVFANTVDAVYAVTKILKTAG 448
T+ DAL A+ L ++ RTMVF N+ DA AV + G
Sbjct: 409 RTRADALGTALGIPLAKSSDAPSADVDKTDADVSRRDRTMVFVNSSDACEAVAAEVSRQG 468
Query: 449 IE-CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
+ +H D+ RA L F + V VCTD+AARG+D+P V+HV+QA+FA +AVD
Sbjct: 469 LHRVASFHADVDASSRAARLAAFARGELDVLVCTDSAARGVDVPGVTHVVQAEFAGNAVD 528
Query: 507 FLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+LHR+GRTARAG G VT+LY E N DLV +R AA+ G+ V
Sbjct: 529 YLHRIGRTARAGAPGRVTNLYGEVNADLVAAVRDAARRGEGV 570
>gi|255088746|ref|XP_002506295.1| predicted protein [Micromonas sp. RCC299]
gi|226521567|gb|ACO67553.1| predicted protein [Micromonas sp. RCC299]
Length = 669
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 178/519 (34%), Positives = 254/519 (48%), Gaps = 79/519 (15%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIE 144
L +L+ AL +GF + +Q +V L +DVV+AAETGSGKT +YLVP+
Sbjct: 141 LHPKLLAALHRAGFVHATPLQTRAVPATLDASPDGATRDVVVAAETGSGKTLAYLVPVFS 200
Query: 145 KLCTALGDSENSNSDKEP--TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L + + + R +L+L PN LCEQV R+A++L D+GEPL+ A
Sbjct: 201 NLLFHGHGGDGGGDEHGAMRSNGRLGALILAPNSTLCEQVKRVADSLVGDDGEPLLVTRA 260
Query: 203 VC-----------------GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG---- 241
+ G G PDV+V+TPA ++ +EF +G
Sbjct: 261 LTPDTSMPSPVSSGSSGYEASSGTNRGLPDVVVATPARAAEDV-------LEFTKGGWRR 313
Query: 242 ---------VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMN--------ESG- 283
+++VVFDEAD LL G + V ++ + E++L+ + E G
Sbjct: 314 GNFAPAATHIRHVVFDEADQLLSGGYLRPVRGAFDVL-YREEKLAALGLTVPGSNPEGGG 372
Query: 284 ---VEKPLEMDNSSLTQPDLQDEENLQDEYIS---DEGNF----EGDSDVEGLTEETKSG 333
V LE S D ++ D S D+ N +G S + G
Sbjct: 373 DFNVFNSLEGPEQSEWAGDKSRPKDGGDRAWSADHDDINVVAKRKGKSRMGKGAALGGKG 432
Query: 334 SIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393
I + R R+ QY+F AAT+ NGKKT GA+++ FPDA WI G LH
Sbjct: 433 EIGVGEGRDFRR------QYVFAAATVMSNGKKTPGAMIRHGFPDARWIEGRRLHKAVAT 486
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAET---SRTMVFANTVDAVYAVTKILKTAGIE 450
+ + W++VT T+ DAL A L G E RT+VF N+ A VT L G+
Sbjct: 487 VDQTWVKVTASTRADALGRA----LALGDEKRQRDRTLVFVNSTRACEEVTAELIRQGLS 542
Query: 451 CYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
+H ++ ER+ LV+ V VCTD+AARG+D+P V HV+QA+FA +AVD+LH
Sbjct: 543 AAAFHAEVGTRERSSRLVSLANGDVTVLVCTDSAARGVDVPEVVHVVQAEFAANAVDYLH 602
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
R+GRTAR G G VT+L + ++ DLVD +R A G PV
Sbjct: 603 RIGRTARCGASGRVTNLVSNADADLVDAVRAAEAAGAPV 641
>gi|298708697|emb|CBJ49194.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 662
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 231/481 (48%), Gaps = 79/481 (16%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
++ F D V + LGLS L LE G G + VQAA+V +LSG+D+++ AETGSGK
Sbjct: 210 AEAIFFGDRVPFSDLGLSPALCGHLEALGIGGSTAVQAAAVPGILSGEDMIVGAETGSGK 269
Query: 135 THSYLVPLIEKLCTA------LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR---- 184
T +YL+P++E++ L D N+ P P +VL PN LC+QV
Sbjct: 270 TLAYLLPIVERVLRGQAVAKDLPDELLGNARGWPMFPDV--VVLVPNKELCDQVHSVLKG 327
Query: 185 MANALSADNGEPLVRAVAVCGGQGWPIG----KPDVIVSTPAALLNNIDPKRRRRMEFVR 240
+ AL+AD + A +P P ++V TP+ L + K +
Sbjct: 328 ILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKA---IPLFC 384
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
+V DEADML+ GS++ KQL D+
Sbjct: 385 KATTLVLDEADMLMEGSYR--------------KQLD---------------------DI 409
Query: 301 QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL 360
D + +EG V+G R RK QY+ AATL
Sbjct: 410 LVAFRRADRVMVEEGPI-----VDG----------------RGRKRGIDKTQYVLAAATL 448
Query: 361 PINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV--TVDTQVDALIEAVKERL 418
P G K+ +K+ FP+A I ++H H+P +++ ++EV V ++ A+I+ +++ +
Sbjct: 449 PTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTV 508
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVF 477
A+TSRTMVF NT + + L G YHKD+ ER L + + +
Sbjct: 509 S-DADTSRTMVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKIL 567
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
VCTD AARGID+P+V++++Q + AT+ V LHR+GR ARAG+ G T+ Y + +DLV++
Sbjct: 568 VCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNS 627
Query: 538 I 538
I
Sbjct: 628 I 628
>gi|224003671|ref|XP_002291507.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220973283|gb|EED91614.1| RNA helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 527
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 223/470 (47%), Gaps = 77/470 (16%)
Query: 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD--SENSNSDKEPT 163
RPS VQAA + +G++ ++ AETGSGKT +YL+PL+E + + + N +P
Sbjct: 1 RPSAVQAAVFDTISNGENCIVGAETGSGKTLAYLLPLVEDILKRKREWKAAGGNGIMDPG 60
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAA 223
A +++L PN L Q VRMA ++ ++ ++ PD++ +TPAA
Sbjct: 61 YDYARAIILVPNKELANQAVRMAASICGGLDRCVIWVPSMSSSTHVRQPPPDLVFATPAA 120
Query: 224 L-LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNES 282
L + PK +EF V +V DEADMLL G + ++ + FR ++ + R
Sbjct: 121 LGPMGLSPK---NIEFFADVPTLVVDEADMLLDGGYVRELNNALMGFRRADRLVGRYEAF 177
Query: 283 GVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRR 342
+K D +++ + +D + D +
Sbjct: 178 TFKKK--------NADDCEEKSDEEDSFFDD----------------------------K 201
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR---LKEK-- 397
++ Q+ Q+IFVAATLP G ++ A L++ FPDA I+ HN R L+++
Sbjct: 202 PQEKEQKRTQHIFVAATLPDYGLRSVDAYLQRKFPDAKSIT--MAGMHNARHYGLEQESQ 259
Query: 398 --WIEVTVD-TQVDALIEAVKERLE--------FGAETSRTMVFANTVDAVYAVTKILKT 446
W E+ + ++ L++ + RLE G + + MVF N+V+ V T L+
Sbjct: 260 TVWDEIEENRDRMKRLVDVL--RLEDSQVGVDGRGMKGEKVMVFLNSVNDVDGATNGLRR 317
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQE----KGG----------VFVCTDAAARGIDIPNV 492
AGI YH + LEERA L F+ GG V VCTD A+RG+DIP V
Sbjct: 318 AGINAVPYHAKIPLEERASNLDKFRRYRVPSGGNDDNDEDTVPVLVCTDLASRGLDIPGV 377
Query: 493 SHVIQADFATSAVDFLHRVGRTARAGQY-GLVTSLYTESNRDLVDTIRRA 541
S V+Q FA + V LHR+GR RAG G Y + R+LV+ +R A
Sbjct: 378 SAVVQLQFAGNVVSHLHRMGRCGRAGNRDGRGIVYYGPAERELVEVVREA 427
>gi|397621329|gb|EJK66238.1| hypothetical protein THAOC_12857 [Thalassiosira oceanica]
Length = 672
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 177/626 (28%), Positives = 273/626 (43%), Gaps = 142/626 (22%)
Query: 18 PPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRGFAAAAAVVSDKNGSSDT 77
P +L + SS S + P R + L+ K RG + +V S+ ++D
Sbjct: 36 PARLANSHKPKSSHFSRDCAGPYTP--NRLISLSSTK----RGVESVPSVSSEYINNADI 89
Query: 78 --FFADDNV--TWKSLGL-SDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAET 130
FFA+ ++SLG+ S L+R LE RPS VQA++ +L G+D ++ AET
Sbjct: 90 GEFFANPTSYPDFESLGITSSSLLRRLEAPPLNLKRPSAVQASAYDIILRGQDTIVGAET 149
Query: 131 GSGKTHSYLVPLIEKLCTALGD-SENSNSDK----------------EPTPPRAPSLVLC 173
GSGKT +YL+PL+E + + E N ++ +P A +++L
Sbjct: 150 GSGKTFAYLIPLVEDVLRRKREWREKVNREEEGEEDLDGEVINREILDPGYDYARAIILV 209
Query: 174 PNVVLCEQVVRMA-------------------------NALSADNGEPLVRAVAVCGGQG 208
PN L Q RMA + L + E +VR + GG
Sbjct: 210 PNKELAYQAARMAATICGGIDRCVIWGADALTQGMDRSSPLGGAHEEDIVRLALLPGGLS 269
Query: 209 WPIG------------------KPDVIVSTPAALLNNIDP--KRRRRMEFVRGVKYVVFD 248
P+ PD+I +TPA N+ P + ++ V +V D
Sbjct: 270 NPLDFPPFRFAIAPSPSKPRQPPPDLIFATPA----NLSPFAHSPKNIDLFSDVATLVVD 325
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EADMLL G + ++ ++ FR ++ + R + K + S +T+
Sbjct: 326 EADMLLDGGYVRELNNVLMGFRRADRLVDRYDTPFFRKIRKKKESPVTE----------- 374
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
S+E D D + +++ GS KKK Q+IFVAATLP G ++
Sbjct: 375 ---SNE-----DDDTDDWFDDSDEGSTKKK---------MSKTQHIFVAATLPDFGLRSV 417
Query: 369 GAVLKQMFPDADWISGNYLHFHNPR---LKEK----WIEVTVDT-QVDALIEAVK-ERLE 419
A L + FPDA +S HN R L+++ W E+T + ++ L++ +K +R E
Sbjct: 418 DAYLNRKFPDA--VSITMKGMHNARHYGLEDQSQTVWNELTENKDRMKRLVDVLKLDRSE 475
Query: 420 FGA-----ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG 474
G + + M+F N+V+ V T L+ AGI YH + L+ER+ L F+
Sbjct: 476 VGPDGRGLQGEKVMIFLNSVNDVDGATNGLRRAGINAVPYHAKIPLQERSSNLDQFRRYR 535
Query: 475 G------------------VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
V VCTD A+RG+DIP V+ V+Q FA + V LHR+GR R
Sbjct: 536 APSDGSDDQVAETVHGSIPVLVCTDLASRGLDIPGVTAVVQLQFALNVVSHLHRMGRCGR 595
Query: 517 AGQY-GLVTSLYTESNRDLVDTIRRA 541
AG G Y + R+LV +R A
Sbjct: 596 AGNRDGRGIIFYGSAERELVQVVREA 621
>gi|301123255|ref|XP_002909354.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262100116|gb|EEY58168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 476
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 214/487 (43%), Gaps = 111/487 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS L L G P+ Q ++ +LSG+DVV+AAETG GKT S+L+P++E+
Sbjct: 39 FQSVGLSSALSDRLAILGLSTPTSAQYKAIPRILSGEDVVVAAETGGGKTLSFLLPVVEQ 98
Query: 146 LCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVV-----------RMANALSADN 193
L L P+ R P+ LVL + L Q+ R+A +LS+
Sbjct: 99 LRRNL---------LPPSEMRLPAALVLTTSQELVRQLAAVLHQVDPELARLAVSLSSS- 148
Query: 194 GEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
R G + P+ +++TP ALL P R F + VV DEADML
Sbjct: 149 -----RQTLGHGSRACPL-----VLATPTALLRATKP---RDFAFT---QTVVVDEADML 192
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313
L G F+ + +++ R QP L+ E N
Sbjct: 193 LSGGFEKETKQILATIR-------------------------NQPLLRAELN-------- 219
Query: 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK 373
+ EE K KD+ + Q IF AAT+P GK++ +
Sbjct: 220 -----------SVNEEQKDREFDDKDYSK------DQTQTIFSAATIPDYGKRSVRHYID 262
Query: 374 QMFPDADWISGNYLHFHNPRLK------EKWIEVTVD------TQVDALIEAVKERLEFG 421
FP A + H P+L ++++ D + D L + + E G
Sbjct: 263 YKFPSAVFAITEGFHRTLPKLTLRTHNLQEFMTRGGDFMDERHARCDLLYQILAS--EEG 320
Query: 422 AETSRTMVFANTVDAVYAVTKILKT--AGIECYCYHKDLSLEERAKTLVNFQ-----EKG 474
+ +T+VF N++ + + L+ C +HK+++ ER K L +K
Sbjct: 321 GK--KTLVFTNSIASADELLDFLENDKEMANCALFHKEVARSERQKLLKRLDSDDETDKD 378
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
V +CTD AARG+D V HV+Q +FA+ V +LHR+GRT RAG G VTS+ + N +
Sbjct: 379 LVVICTDIAARGLDTTKVGHVVQFEFASDVVSYLHRIGRTGRAGTAGTVTSIESSENSLV 438
Query: 535 VDTIRRA 541
++ IR A
Sbjct: 439 LEKIREA 445
>gi|237838443|ref|XP_002368519.1| RNA helicase, putative [Toxoplasma gondii ME49]
gi|211966183|gb|EEB01379.1| RNA helicase, putative [Toxoplasma gondii ME49]
gi|221505810|gb|EEE31455.1| RNA helicase, putative [Toxoplasma gondii VEG]
Length = 682
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 133/478 (27%), Positives = 206/478 (43%), Gaps = 87/478 (18%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ + LG+ + AL N G + + +Q S+ +L G+D VI AETGSGKT Y+V L
Sbjct: 225 RLVFPRLGVFPNFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGL 284
Query: 143 IEKLCTALGDSENS------NSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGE 195
++ + E P P P ++V+ P L QVV A L
Sbjct: 285 VQNILLQKMIHEKKEDAAVLQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLCRKT-- 342
Query: 196 PLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
P+ + + WP G PD++V TP L FV+G
Sbjct: 343 PVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVL-----------APFVKG-------- 383
Query: 250 ADMLLCGSFQNQV-IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
G ++ R I M DE + + E G + +E ++ + D Q E
Sbjct: 384 ------GHAKDLTPFREIQMLALDEADM--LLEGGYRQAMEGIFTAFRRADRQSAE---- 431
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
SG +R QYIF AAT+P G K+
Sbjct: 432 -----------------------SG--------------KRRTQYIFAAATIPDRGPKSV 454
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
V+ ++ P A + + LH H +L++++++V D + + RL+ + + M
Sbjct: 455 RKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKLGGSDKVM 514
Query: 429 VFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
+F NT ++ + L+ A + ++ ++R+ L F K V VCTDAA+R
Sbjct: 515 IFCNTAQTARSLFEALEKALPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASR 574
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
G+DI V+ V+Q DFA SAV LHRVGR AR Q G + Y ++ + LVD I+RAA+
Sbjct: 575 GLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGRALNFYYDTQKALVDVIQRAAR 632
>gi|221484209|gb|EEE22505.1| RNA helicase, putative [Toxoplasma gondii GT1]
Length = 682
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/478 (27%), Positives = 206/478 (43%), Gaps = 87/478 (18%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ + LG+ + AL N G + + +Q S+ +L G+D VI AETGSGKT Y+V L
Sbjct: 225 RLVFPRLGVFPDFVEALGNFGVRQATDIQQLSIPAILEGRDTVIGAETGSGKTLGYVVGL 284
Query: 143 IEKLCTALGDSENS------NSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGE 195
++ + E P P P ++V+ P L QVV A L
Sbjct: 285 VQNILLQKMIHEKKEDAAVLQKADLPIPRHHPYAVVIVPTRELALQVVAWARRLCRKT-- 342
Query: 196 PLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
P+ + + WP G PD++V TP L FV+G
Sbjct: 343 PVTAQLMLGTYTRWPFGTLAIPTSPDLVVCTPPVL-----------APFVKG-------- 383
Query: 250 ADMLLCGSFQNQV-IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
G ++ R I M DE + + E G + +E ++ + D Q E
Sbjct: 384 ------GHAKDLTPFREIQMLALDEADM--LLEGGYRQAMEGIFTAFRRADRQSAE---- 431
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
SG +R QYIF AAT+P G K+
Sbjct: 432 -----------------------SG--------------KRRTQYIFAAATIPDRGPKSV 454
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
V+ ++ P A + + LH H +L++++++V D + + RL+ + + M
Sbjct: 455 RKVISRLCPRATFFCTDSLHQHREQLQQEFVQVPAGASDDERVSLLLSRLKKLGGSDKVM 514
Query: 429 VFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
+F NT ++ + L+ A + ++ ++R+ L F K V VCTDAA+R
Sbjct: 515 IFCNTAQTARSLFEALEKALPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASR 574
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
G+DI V+ V+Q DFA SAV LHRVGR AR Q G + Y ++ + LVD I+RAA+
Sbjct: 575 GLDIAGVTLVVQYDFALSAVAHLHRVGRVARGEQPGKALNFYYDTQKALVDVIQRAAR 632
>gi|412985079|emb|CCO20104.1| predicted protein [Bathycoccus prasinos]
Length = 618
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 2/197 (1%)
Query: 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
N + +QY+F AAT+ GK+T GAVLK FPDA W + LH L + W EV+++T
Sbjct: 391 NREFRRQYVFAAATVMSTGKRTPGAVLKFGFPDAVWTKSSSLHKPRAELTQTWREVSLET 450
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ AL +A+ + A+ +T+VF N+ A++ L G + +H D+ ER
Sbjct: 451 RAKALFDALDMDPK-TAQVEKTLVFVNSGSVCEAISNELANFGAKAASFHSDIDPLERES 509
Query: 466 TLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L F + V V TD+ +RG+DIPNV HV+QA+FA +A ++LHRVGRTARAG+ G T
Sbjct: 510 RLRRFASQDIDVLVATDSVSRGVDIPNVKHVVQAEFAQNATEYLHRVGRTARAGKLGRAT 569
Query: 525 SLYTESNRDLVDTIRRA 541
++ + DL + IR+A
Sbjct: 570 NILLPGDFDLANAIRKA 586
>gi|348675596|gb|EGZ15414.1| hypothetical protein PHYSODRAFT_333669 [Phytophthora sojae]
Length = 469
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 203/474 (42%), Gaps = 91/474 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS L L G P+ Q ++ P+L+G+DVV+AAETG GKT S+L+P++E+
Sbjct: 39 FHSLGLSGALSDRLTQLGLTTPTSAQCKAIPPILAGEDVVVAAETGGGKTLSFLLPVVEQ 98
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + P PP L + +++VR A+ L R
Sbjct: 99 L------------RRNPLPPSEMRLPTALVLTTSQELVRQLAAVLHQVDPELARLAVSLS 146
Query: 206 GQGWPIGKPD-----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
+G+ ++ +TP ALL P R F + VV DEADMLL G F+
Sbjct: 147 SSRQTLGQHGSRACPLVFATPGALLRATKP---RDFAFT---QMVVVDEADMLLSGGFEK 200
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
+ +++ R +PL + +S T D +D + DE +F
Sbjct: 201 ETKQILATIR--------------NQPLLRAELNSCTDSDYKDRD-------FDEDDFSA 239
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA 379
D + R VR Y F + I T G + P
Sbjct: 240 D----------------RTQTRSVRHYID----YKFPSTVFAI----TDG--FHRTLPKL 273
Query: 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAET-----SRTMVFANTV 434
LH HN L+E + A E + + L E +T+VF N++
Sbjct: 274 ------TLHAHN--LQEFMATGDFMDEQHARCELLHQILTSNDEAGVSAGEKTLVFTNSI 325
Query: 435 DAVYAVTKILKT--AGIECYCYHKDLSLEERAKTLVNFQ-----EKGGVFVCTDAAARGI 487
+ A+ L++ C +HK++ +R + L +K V +CTD AARG+
Sbjct: 326 ASADALFDFLQSEKGMANCALFHKEVDRPQRQQLLKRLDSEADADKDLVVICTDIAARGL 385
Query: 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
D VSHV+Q +FA+ V +LHR+GRT RAG G V+S+ + N ++D IR A
Sbjct: 386 DTTKVSHVVQFEFASDVVSYLHRIGRTGRAGTTGTVSSIESSENSLVLDKIREA 439
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 203/478 (42%), Gaps = 104/478 (21%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FFA +++ LG+ R++ L P+ +Q+ S+ +L DV+ AA+TG+GKT +
Sbjct: 30 FFAAQ--SFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLA 87
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPP------RAPSLVLCPNVVLCEQVVRMANALSA 191
YLVP++E+L + + K T P R +LVL P+ L QV +A LS
Sbjct: 88 YLVPVVEQLLRKEAAMQKEHEAKGLTGPAEVVLGRPRALVLLPSRELALQVASVAKQLSH 147
Query: 192 DNGEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+ + G+ I + D+I+ TP + I + FV + V
Sbjct: 148 SAK---FASCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCIS----KGDFFVSRIDTV 200
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
V DEAD L FD K R V P++ + QP LQ
Sbjct: 201 VVDEADTL-----------------FDAKMGFRKELDAVLGPIQASAAKRNQP-LQ---- 238
Query: 306 LQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL--PIN 363
+ AAT+ PI+
Sbjct: 239 -----------------------------------------------MVLAAATIRSPID 251
Query: 364 GKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAE 423
VLK+ F + +S + +H ++E+++ V +++ AL EA+ A
Sbjct: 252 ------QVLKKKFGELRVVSDDKIHKTPTTIREEFVRVVPESKHSALREALHLHKRRAA- 304
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQEKGGV--FVCT 480
+TMVF +V + +L+ G + C H D+ R + + F E V VCT
Sbjct: 305 --KTMVFCRNSASVRSTEHMLREHGFQDAVCLHGDMPPARRHEAIHAFTEDPHVNILVCT 362
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
D AARG+DI V HV+ DF SAVD++HR GRT RAG+ GLVTSL T+ + L +I
Sbjct: 363 DLAARGLDIDTVKHVVMFDFPKSAVDYVHRAGRTGRAGEQGLVTSLVTKHDLALAMSI 420
>gi|221481456|gb|EEE19842.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
Length = 910
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 212/465 (45%), Gaps = 54/465 (11%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
LI L+ G P+ VQ + +LSGK ++ A TGSGKT ++ +PL+ +L A D+E
Sbjct: 269 LIPLLKGGGIVTPTDVQERCIPILLSGKSSLVVAPTGSGKTLAWALPLLHRLLAA--DTE 326
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI--- 211
P P + +VL P+ L QV+ S+ ++ + A GQ +
Sbjct: 327 R----LAPYPQQPGLVVLVPSRELATQVLGQLRRFSS-----VITSAACAAGQSYVKEVR 377
Query: 212 ---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+V+TPA LL ++ K + V+ +V +EAD L C SF Q + ++
Sbjct: 378 MLRSGVDVVVATPARLLLHLHKKNVN----MHRVQALVIEEADTL-CDSFYEQELCVLLS 432
Query: 269 FRFDEKQLS----RMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
F Q S ++ G E+ E + + Q + L E F +
Sbjct: 433 SHFRRFQASPAVAKVALEGPERGGEQARAGWSSSPHQSQNLL--EMRESRPAFGREEAGR 490
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
G E + + + D Q++FVAAT GA+ + + + +
Sbjct: 491 GNAEGSNEALLHRNDL-----------QFVFVAAT-------KTGALARFLKDQLNRVHI 532
Query: 385 NYL-----HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
L H +++ ++ + ++ L+E ++ER+ G ++TM+F NTV+ A
Sbjct: 533 TSLCTPDAHLAAAGVQQVFVSLHGQDRMSRLMEVLEERV--GGADAKTMIFCNTVNTCRA 590
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
V L G + C H + + R + Q + VCT+ A+RG+++ V HVI
Sbjct: 591 VDLTLLEKGYKVSCLHGLMPFKLRKASFQKLQNGDTNILVCTNVASRGLEVEGVKHVIHF 650
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
DF + D+LHR GRTAR G+ G VT L+++ N L+ I+ A++
Sbjct: 651 DFPQTLADYLHRSGRTARGGETGRVTILFSKRNLPLIQQIQNASR 695
>gi|237838825|ref|XP_002368710.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211966374|gb|EEB01570.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 910
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 212/465 (45%), Gaps = 54/465 (11%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
LI L+ G P+ VQ + +LSGK ++ A TGSGKT ++ +PL+ +L A D+E
Sbjct: 269 LIPLLKGGGIVTPTDVQERCIPILLSGKSSLVVAPTGSGKTLAWALPLLHRLLAA--DTE 326
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI--- 211
P P + +VL P+ L QV+ S+ ++ + A GQ +
Sbjct: 327 R----LAPYPQQPGLVVLVPSRELATQVLGQLRRFSS-----VITSAACAAGQSYVKEVR 377
Query: 212 ---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+V+TPA LL ++ K + V+ +V +EAD L C SF Q + ++
Sbjct: 378 MLRSGVDVVVATPARLLLHLHKKNVN----MHRVQALVIEEADTL-CDSFYEQELCVLLS 432
Query: 269 FRFDEKQLS----RMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
F Q S ++ G E+ E + + Q + L E F +
Sbjct: 433 SHFRRFQASPAVAKVALEGPERGGEQARAGWSSSPHQSQNLL--EMRESRPAFGREEAGR 490
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
G E + + + D Q++FVAAT GA+ + + + +
Sbjct: 491 GNAEGSNEALLHRNDL-----------QFVFVAAT-------KTGALARFLKDQLNRVHI 532
Query: 385 NYL-----HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
L H +++ ++ + ++ L+E ++ER+ G ++TM+F NTV+ A
Sbjct: 533 TSLCTPDAHLAAAGVQQVFVSLHGQDRMSRLMEVLEERV--GGADAKTMIFCNTVNTCRA 590
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
V L G + C H + + R + Q + VCT+ A+RG+++ V HVI
Sbjct: 591 VDLTLLEKGYKVSCLHGLMPFKLRKASFQKLQNGDTNILVCTNVASRGLEVEGVKHVIHF 650
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
DF + D+LHR GRTAR G+ G VT L+++ N L+ I+ A++
Sbjct: 651 DFPQTLADYLHRSGRTARGGETGRVTILFSKRNLPLIQQIQNASR 695
>gi|221505423|gb|EEE31068.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 910
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 212/465 (45%), Gaps = 54/465 (11%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
LI L+ G P+ VQ + +LSGK ++ A TGSGKT ++ +PL+ +L A D+E
Sbjct: 269 LIPLLKGGGIVTPTDVQERCIPILLSGKSSLVVAPTGSGKTLAWALPLLHRLLAA--DTE 326
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI--- 211
P P + +VL P+ L QV+ S+ ++ + A GQ +
Sbjct: 327 R----LAPYPQQPGLVVLVPSRELATQVLGQLRRFSS-----VITSAACAAGQSYVKEVR 377
Query: 212 ---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+V+TPA LL ++ K + V+ +V +EAD L C SF Q + ++
Sbjct: 378 MLRSGVDVVVATPARLLLHLHKKNVN----MHRVQALVIEEADTL-CDSFYEQELCVLLS 432
Query: 269 FRFDEKQLS----RMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
F Q S ++ G E+ + + + Q + L E F +
Sbjct: 433 SHFRRFQASPAVAKVALEGPERGGDQARAGWSSSPHQSQNLL--EMRESRPAFGREEAGR 490
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
G E + + + D Q++FVAAT GA+ + + + +
Sbjct: 491 GNAEGSNEALLHRNDL-----------QFVFVAAT-------KTGALARFLKDQLNRVHI 532
Query: 385 NYL-----HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
L H +++ ++ + ++ L+E ++ER+ G ++TM+F NTV+ A
Sbjct: 533 TSLCTPDAHLAAAGVQQVFVSLHGQDRMSRLMEVLEERV--GGADAKTMIFCNTVNTCRA 590
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
V L G + C H + + R + Q + VCT+ A+RG+++ V HVI
Sbjct: 591 VDLTLLEKGYKVSCLHGLMPFKLRKASFQKLQNGDTNILVCTNVASRGLEVEGVKHVIHF 650
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
DF + D+LHR GRTAR G+ G VT L+++ N L+ I+ A++
Sbjct: 651 DFPQTLADYLHRSGRTARGGETGRVTILFSKRNLPLIQQIQNASR 695
>gi|156404211|ref|XP_001640301.1| predicted protein [Nematostella vectensis]
gi|156227434|gb|EDO48238.1| predicted protein [Nematostella vectensis]
Length = 566
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 212/472 (44%), Gaps = 95/472 (20%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIE 144
W+ LG++ ++RAL + GF +P+ +Q+ S+ P +L +D++ AAETGSGKT ++ +P+I+
Sbjct: 4 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 63
Query: 145 KL-CTALGDSENSNSDKEPT------PPRAPSLVLCPNVVLCEQV----VRMANALSADN 193
+ +E S SDKE P A L++ P L QV V+ A S
Sbjct: 64 HIEAYKKRKAEQSPSDKESDLESQGYPLLA--LIMAPTRELALQVKDHLVKAAKYTS--- 118
Query: 194 GEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
V+ A+ GG P +P+++V+TP L I ++ + ++ ++Y+V
Sbjct: 119 ----VKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELIS-QQEEHVSNIQLLRYLVI 173
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ 307
DEAD RM E G + L SS+ L+
Sbjct: 174 DEAD--------------------------RMVEQGHYEEL----SSI----------LE 193
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA-TLPINGKK 366
++ GN E D + E S S K + R++K +IF A TLP + KK
Sbjct: 194 LIHLKKSGNMEVDQE----DAERPSNSSKTPEKARLQK-------FIFSATLTLPKSFKK 242
Query: 367 TAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-----VDTQVDALIEAVKERLE-- 419
++ + ++ H R + K I+VT V+T +A I KE +
Sbjct: 243 RGR---EKTVSKGELLASLMDKIHLERKRSKVIDVTSSRGTVETLTEAKITCTKEDKDVY 299
Query: 420 ----FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG- 474
RT+VFANT+D V +T IL+ + H + +R K L F+
Sbjct: 300 LYYFLLKYPGRTLVFANTIDCVRRLTSILRLVQLNPLPLHASMQQRQRLKNLDRFKASNT 359
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
G+ + TD AARG+DI N+ HVI ++HR GRTARA GL L
Sbjct: 360 GLLLATDVAARGLDIANIEHVIHYQVPKDPEVYVHRSGRTARASHEGLSVVL 411
>gi|71027723|ref|XP_763505.1| RNA helicase [Theileria parva strain Muguga]
gi|68350458|gb|EAN31222.1| RNA helicase, putative [Theileria parva]
Length = 741
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 207/469 (44%), Gaps = 75/469 (15%)
Query: 94 RLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153
+LI + + +P+ +Q S+ +L+G+D++ A+TGSGKT ++L+P++ +
Sbjct: 233 KLIPNIRKVNYTKPTPIQKHSIPVILAGRDLMACAQTGSGKTAAFLLPIVTSMLRT---- 288
Query: 154 ENSNSDKEPTPPRAPSL--------------VLCPNVVLCEQVVRMANALSADNGEPLVR 199
PP+ P+L VL P L Q+ + + G +R
Sbjct: 289 ---------GPPKQPTLSPLYGARVALPVCLVLSPTRELAVQIFSESRKFNFGTG---IR 336
Query: 200 AVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V + GG Q + + D+ V+TP L + ++ RR++ F +KY+V DEAD +
Sbjct: 337 TVVLYGGSEVRRQLIELERGCDICVATPGRLTDLVE---RRKIIFT-CIKYLVLDEADRM 392
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313
L F Q+ ++ N G D + D +D N +D
Sbjct: 393 LDMGFSPQIKAIL------AHPTMPTNHRGTRTSTHKD----SHRDFKDIINSRDHR--- 439
Query: 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS----KQYIFVAATLPINGKKTAG 369
D+ +++ + K + R VR + +Q + +AT P K
Sbjct: 440 ------DNRDNRDSKDIRDSRDSKDNVRDVRGGGEADQAPLRQTVMFSATFP----KEIQ 489
Query: 370 AVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMV 429
+ ++ D +++ + N +K++ + D ++ LI+ +++ G ++
Sbjct: 490 QLAREFLSDYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIKLLRDNTNLGG---LVLI 546
Query: 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVCTDAAARG 486
F T + L + + H D S E+R K L F K GV V TD AARG
Sbjct: 547 FVETKKRADLIEGYLLSENFKAVNIHGDRSQEDREKALSLF--KAGVRPIMVATDVAARG 604
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
+DI N++HVI D T+ D++HR+GRT RAG G+ TSL ESNR ++
Sbjct: 605 LDISNITHVINCDLPTNIDDYVHRIGRTGRAGNIGIATSLVNESNRPIL 653
>gi|403222979|dbj|BAM41110.1| DEAD-box family RNA helicase [Theileria orientalis strain Shintoku]
Length = 731
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 201/471 (42%), Gaps = 100/471 (21%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
L+ ++ + +P+ +Q S+ +L +D++ A+TGSGKT ++L+P++ +
Sbjct: 257 LLSNIKKVNYNKPTPIQRHSISVILENRDLMACAQTGSGKTAAFLLPIVTCML------- 309
Query: 155 NSNSDKEPTPPRAPSL--------------VLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+ PP+AP+L VL P L Q+ A + G +R
Sbjct: 310 ------KTGPPKAPALNAMYSNKVALPVCLVLSPTRELAVQIYAEARKFNFGTG---IRT 360
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + GG Q + + D+ V+TP L + ++ RR +KY+V DEAD +L
Sbjct: 361 VVLYGGSEVRRQLIELERGCDICVATPGRLTDLVE----RRKVLFSCIKYLVLDEADRML 416
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL----QDEENLQDEY 310
F Q IR I +T P + + +N Y
Sbjct: 417 DMGFAPQ-IRAI----------------------------VTHPSMPGGGKYGDNYHQGY 447
Query: 311 ISDE---GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKT 367
S + G +E S + L++ K + +Q + +AT P K
Sbjct: 448 TSGQLGSGRYESTSGRQQLSQGEKEEKAGE------------ERQTVMFSATFP----KE 491
Query: 368 AGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRT 427
+ K+ D +++ + N +K++ + D +V LI+ +KE G
Sbjct: 492 IQQLAKEFLNDYIYLAVGRVGSTNEFIKQRMVYADQDQKVKYLIKLLKENTNLGG---LV 548
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVCTDAAA 484
++F T + L + H D S E+R K L F K GV V TD AA
Sbjct: 549 LIFVETKKRADLIEGYLLKENFKAVNIHGDRSQEDREKALSLF--KAGVRPIMVATDVAA 606
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
RG+DI N++HVI D T+ D++HR+GRT RAG G+ TSL ESNR ++
Sbjct: 607 RGLDISNITHVINCDLPTNIDDYVHRIGRTGRAGNVGIATSLVNESNRPIL 657
>gi|348672465|gb|EGZ12285.1| hypothetical protein PHYSODRAFT_361512 [Phytophthora sojae]
Length = 836
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 210/475 (44%), Gaps = 84/475 (17%)
Query: 86 WKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
W G L D + +A+++ GF RPS +Q ++ L +D++ AETGSGKT ++++P+I
Sbjct: 371 WDEAGNLLPDAVFKAIKDLGFERPSPIQMQAIPIGLQKRDIIGIAETGSGKTAAFVIPII 430
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPL-- 197
+ + ++ P +LV+ P L Q+ +++ S E L
Sbjct: 431 AYIYSLPPAMVARTGEQGPL-----ALVMAPTRELALQIEQEAIKLCKYTSVGQPEKLGP 485
Query: 198 VRAVAVCGGQ-----GWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
++ ++V GGQ G+ + + D+I+ TP L++ ++ + YVV DEAD
Sbjct: 486 IKTLSVVGGQSIEDQGFRLREGVDIIIGTPGRLMDCLES----HYLVLNQCNYVVLDEAD 541
Query: 252 MLLCGSFQNQVIRLI-NMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310
++ F+ QV+ ++ NM L NE +E+ L + N + +LQ
Sbjct: 542 RMIDMGFEPQVVAVLENMGSL----LKSENEEEMEQQLTLANGAQPGEELQ--------- 588
Query: 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGA 370
R + +AT+P+ ++ A
Sbjct: 589 -------------------------------------HRLRVTTMFSATMPVEVERLAKT 611
Query: 371 VLKQ--MFPDADWISG------NYLHFHNP-RLKEKWIEVTVDTQVDALIEAVKERLEFG 421
L+ + D SG + F NP + + K +EV D + + R E
Sbjct: 612 FLRHPSIVKIGDEDSGKNKRIDQRVLFMNPGKKRSKLVEVLRDILSAQSVPLPRSRKEKV 671
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCT 480
+ ++ +VF N +V K + + G C H + ++R ++L F+E + V T
Sbjct: 672 VDGAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVAT 731
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
D A RG+DIP+V+HV+ D + ++ HR+GRT RAG+ G+ S T+ + +++
Sbjct: 732 DVAGRGLDIPDVTHVVNFDLPSKIQNYTHRIGRTGRAGKDGVAISFLTDDDEEIM 786
>gi|85000907|ref|XP_955172.1| DEAD-box family (RNA) helicase [Theileria annulata strain Ankara]
gi|65303318|emb|CAI75696.1| DEAD-box family (RNA) helicase, putative [Theileria annulata]
Length = 797
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 209/470 (44%), Gaps = 69/470 (14%)
Query: 94 RLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153
+L+ + + +P+ +Q S+ +L+G+D++ A+TGSGKT ++L+P++ +
Sbjct: 256 KLVPNIRKVNYTKPTPIQRHSIPVILAGRDLMACAQTGSGKTAAFLLPIVTSML------ 309
Query: 154 ENSNSDKEPTPPRAPSL--------------VLCPNVVLCEQVVRMANALSADNGEPLVR 199
PP+ PSL VL P L Q + + G +R
Sbjct: 310 -------RTGPPKQPSLGPLYNSRVALPVCLVLSPTRELAVQTYTESRKFNFGTG---IR 359
Query: 200 AVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V + GG Q + + D+ V+TP L + ++ RR++ F +KY+V DEAD +
Sbjct: 360 TVVLYGGSEVRRQLIELERGCDICVATPGRLTDLVE---RRKIVF-SCIKYLVLDEADRM 415
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313
L F Q+ +++ N V + SS+ +++++D +
Sbjct: 416 LDMGFSPQIKSILSHPTMTSNV---DNSDRVRGGSDSRVSSIRGEGRSTKDSVRDSMETP 472
Query: 314 EGNFE-----GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
G E G + G + ++K+K R Q + +AT P K
Sbjct: 473 LGVKEDPFGAGGTTSLGGADTVTGDTVKEKKILR---------QTVMFSATFP----KEI 519
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
+ ++ D +++ + N +K++ + D ++ LI+ +K+ G +
Sbjct: 520 QQLAREFLNDYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIKLLKDNTNLGG---LVL 576
Query: 429 VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVCTDAAAR 485
+F T + L + + H D S E+R K L F K GV V TD AAR
Sbjct: 577 IFVETKKRADLIEGYLLSENFKAVNIHGDRSQEDREKALSLF--KAGVRPIMVATDVAAR 634
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
G+DI N++HVI D T+ D++HR+GRT RAG G+ TSL ESNR ++
Sbjct: 635 GLDISNITHVINCDLPTNIDDYVHRIGRTGRAGNIGIATSLVNESNRPIL 684
>gi|401409918|ref|XP_003884407.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
gi|325118825|emb|CBZ54377.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
Length = 774
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 133/483 (27%), Positives = 211/483 (43%), Gaps = 87/483 (18%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
LI L+ G P+ VQ + +L+G ++ A TGSGKT ++ +PL+ + L D+E
Sbjct: 173 LIPLLKGGGIVTPTDVQERCIPLLLAGNSSLVVAPTGSGKTLAWALPLLHRWI--LADTE 230
Query: 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI--- 211
P P + +VL P+ L QV+ S+ ++ + A GQ +
Sbjct: 231 R----LAPYPQQPGLVVLVPSRELASQVLGQLRRFSS-----VITSAACAAGQSYVKEVR 281
Query: 212 ---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+VSTPA LL ++ K + V +V +EAD L C SF Q + ++
Sbjct: 282 MLRSGVDVVVSTPARLLLHLHKKNVN----MNRVMALVIEEADTL-CDSFFEQELCVLLS 336
Query: 269 FRFDEKQLSR-------------MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE- 314
F Q S + ESG ++ +SS Q +NL + S
Sbjct: 337 SHFRRFQASPSLALATPGSARGVLPESGTDQARAGWSSSPHQ-----RQNLLEMQESQAP 391
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAV--- 371
E D + + E ++ Q +FVAAT GA+
Sbjct: 392 ARREADENADASAGELP---------------HRNDLQLVFVAAT-------KTGALARF 429
Query: 372 LKQMF----------PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
LKQ PDA H +++ ++ + ++ L+E ++ER+ G
Sbjct: 430 LKQQIGRVHITSVCTPDA--------HLAAAGVQQVFVSLNGQDRMSRLMEVLEERV--G 479
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
+TM+F NTV+ AV L G + C H + + R + Q + + VCT
Sbjct: 480 GGDGKTMIFCNTVNTCRAVDLTLLEKGYKVSCLHGLMPFKLRKASFQKLQNGETNILVCT 539
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+ A+RG+D+ V HVI DF + D+LHR GRTAR G+ G VT L+++ N L+ I+
Sbjct: 540 NVASRGLDVEGVKHVIHFDFPQTLADYLHRSGRTARGGETGRVTILFSKRNLPLIQQIQN 599
Query: 541 AAK 543
A++
Sbjct: 600 ASR 602
>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160380603|sp|A6QUM7.1|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 900
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 208/468 (44%), Gaps = 105/468 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 88 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K + RA L+L P+ L Q +++ L +++V + G
Sbjct: 148 L--------KSHSAKFGS--RA--LILSPSRELALQTLKVVKELGRGTD---LKSVLLVG 192
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G + PD+I++TP L+ ++E + ++YVVFDEAD L
Sbjct: 193 GDSLEEQFEYMASNPDIIIATPGRFLH-------LKVEMSLDLSSIRYVVFDEADRLFEM 245
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPL--EMDNSSLTQPDLQDEE 304
F Q+ +++ K L +G+++P+ +D S PD
Sbjct: 246 GFATQLTEILHGLPSSRQTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPD----- 300
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING 364
LQ+ + + + + + + + L E K + + + +R ++ + SK
Sbjct: 301 -LQNAFFTVKSSEKEGALLHVLHEVIKIPTGETEALKRAKEEVKHSK------------- 346
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAET 424
K K EVT ++ ++ E
Sbjct: 347 ------------------------------KRKRSEVTSNSHKESPTE------------ 364
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAA 483
T++F T V +T IL+T+G + L R + NF++ + V TD A
Sbjct: 365 HSTIIFTATKHHVDYLTSILRTSGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVA 424
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
ARGIDIP +S+VI DF + F+HRVGRTARAG+ G SL ES+
Sbjct: 425 ARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRESD 472
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 206/468 (44%), Gaps = 105/468 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 84 FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A +L++ P+ L Q +++ L ++ V + G
Sbjct: 144 L--------KSHSAKFG----ARALIMSPSRELALQTLKVVKELGRGTD---LKCVLLVG 188
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G + G PD+I++TP L+ ++E + ++YVVFDEAD L
Sbjct: 189 GDSLEEQFEYMSGNPDIIIATPGRFLH-------LKVEMSLDLSSIRYVVFDEADRLFEM 241
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQDEE 304
F Q+ +++ K L +G+++P + +D S PDLQ+
Sbjct: 242 GFSAQLTEILHGLPSSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQN-- 299
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING 364
G F + K G++ + +P G
Sbjct: 300 ----------GFFS-------IKSSEKEGAL---------------LHLLHDIIKIP-TG 326
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAET 424
+ AG K+ HNP+ +++ D ++++ KE
Sbjct: 327 ETEAGKRTKE-------------ELHNPKKRKR---------SDTVLKSHKE----SPTE 360
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAA 483
T++F T V +T +L+ +G + L R + NF+ + V TD A
Sbjct: 361 HSTIIFTATKHHVDYLTSVLRQSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVA 420
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
ARGIDIP +S+VI DF + + F+HRVGRTARAG+ G SL ES+
Sbjct: 421 ARGIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESD 468
>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 905
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 205/468 (43%), Gaps = 105/468 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 84 FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A +L++ P+ L Q +++ L ++ V + G
Sbjct: 144 L--------KSHSAKFG----ARALIMSPSRELALQTLKVVKELGRGTD---LKCVLLVG 188
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G + G PD+I++TP L+ ++E + ++YVVFDEAD L
Sbjct: 189 GDSLEEQFEYMSGNPDIIIATPGRFLH-------LKVEMSLDLSSIRYVVFDEADRLFEM 241
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQDEE 304
F Q+ +++ K L +G+++P + +D S PDLQ+
Sbjct: 242 GFSAQLTEILHGLPSSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQN-- 299
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING 364
G F + K G++ + +P G
Sbjct: 300 ----------GFFT-------IKSSEKEGAL---------------LHLLHDIIKIP-TG 326
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAET 424
+ AG K+ HNP+ +++ V VK E E
Sbjct: 327 ETEAGKRTKE-------------ELHNPKKRKRSDPV------------VKSHKESPTEH 361
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAA 483
S T++F T V +T +L+ +G + L R + NF+ + V TD A
Sbjct: 362 S-TIIFTATKHHVDYLTSVLRQSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVA 420
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
ARGIDIP +S+VI DF + + F+HRVGRTARAG+ G SL ES+
Sbjct: 421 ARGIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESD 468
>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
Pb18]
Length = 895
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 206/466 (44%), Gaps = 101/466 (21%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 84 FQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 143
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A +L++ P+ L Q +++ L ++ V + G
Sbjct: 144 L--------KSHSAKFG----ARALIMSPSRELALQTLKVVKELGRGTD---LKCVLLVG 188
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G + G PD+I++TP L+ + M + ++YVVFDEAD L F
Sbjct: 189 GDSLEEQFEYMSGNPDIIIATPGRFLH-----LKVEMSLDLSSIRYVVFDEADRLFEMGF 243
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQDEENL 306
Q+ ++++ K L +G+++P + +D S PDLQ+
Sbjct: 244 SAQLTEILHVLPSSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQN---- 299
Query: 307 QDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKK 366
G F + K G++ + +P G+
Sbjct: 300 --------GFFS-------IKSSEKEGAL---------------LHLLHDIIKIP-TGET 328
Query: 367 TAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSR 426
AG K+ HNP+ +++ D ++++ KE
Sbjct: 329 EAGKRTKE-------------ELHNPKKRKR---------SDTVLKSHKE----SPTEHS 362
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAAR 485
T++F T V +T +L+ +G + L R + NF+ + V TD AAR
Sbjct: 363 TIIFTATKHHVDYLTSVLRQSGFAVSYAYGSLDQTARKIEVQNFRCGITHILVVTDVAAR 422
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +S+VI DF + + F+HRVGRTARAG+ G SL ES+
Sbjct: 423 GIDIPILSNVINYDFPSQSKIFVHRVGRTARAGRTGWSYSLIRESD 468
>gi|301112795|ref|XP_002998168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262112462|gb|EEY70514.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 823
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 209/475 (44%), Gaps = 85/475 (17%)
Query: 86 WKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
W G L D + +A+++ GF RPS +Q ++ L +D++ AETGSGKT ++++P+I
Sbjct: 359 WSEAGKMLPDAVYKAIKDLGFERPSPIQMQAIPIGLQKRDIIGIAETGSGKTAAFVIPII 418
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL------ 197
+ + ++ P +LV+ P L Q+ + A L L
Sbjct: 419 AYIYSLPATMVARTGEQGPL-----ALVMAPTRELALQIEQEAIKLCKHTSVGLPEKMNP 473
Query: 198 VRAVAVCGGQ-----GWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
++ ++V GGQ G+ + + ++I+ TP L++ ++ + YVV DEAD
Sbjct: 474 IKTLSVVGGQSIEDQGFRLREGVEIIIGTPGRLMDCLES----HYLVLNQCNYVVLDEAD 529
Query: 252 MLLCGSFQNQVIRLI-NMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310
++ F+ QV+ ++ NM L NE +E+ L + N +
Sbjct: 530 RMIDMGFEPQVVAVLENMGSL----LKSENEEEMEQQLTLANRAQL-------------- 571
Query: 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGA 370
G F+ R + +AT+P+ ++ A
Sbjct: 572 ----GEFQ-----------------------------HRLRVTTMFSATMPVEVERLAKT 598
Query: 371 VLKQ--MFPDADWISG------NYLHFHNP-RLKEKWIEVTVDTQVDALIEAVKERLEFG 421
L+ + D SG + F NP + + K +EV D + + R E
Sbjct: 599 FLRHPSIVKIGDEDSGKNKRIEQRVMFMNPGKKRSKLVEVLRDILSAQNVPVPRSRKEKV 658
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCT 480
+ ++ +VF N +V K + + G C H + ++R ++L F+E + V T
Sbjct: 659 VDGAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVAT 718
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
D A RG+DIP+V+HV+ D + ++ HR+GRT RAG+ G+ SL T+ + +++
Sbjct: 719 DVAGRGLDIPDVTHVVNFDLPSKIQNYSHRIGRTGRAGKDGVAISLLTDDDEEIM 773
>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
Length = 940
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 207/468 (44%), Gaps = 105/468 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 90 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 149
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K + RA L+L P+ L Q +++ L +++V + G
Sbjct: 150 L--------KSHSAKFGS--RA--LILSPSRELALQTLKVVKELGRGTD---LKSVLLVG 194
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G + PD+I++TP L+ ++E + ++YVVFDEAD L
Sbjct: 195 GDSLEEQFEYMASNPDIIIATPGRFLH-------LKVEMSLDLSSIRYVVFDEADRLFEM 247
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPL--EMDNSSLTQPDLQDEE 304
F Q+ +++ K L +G+++P+ +D S PD
Sbjct: 248 GFATQLTEILHGLPSSRQTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPD----- 302
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING 364
LQ+ + + + + + + + L E K + + + +R ++ + SK
Sbjct: 303 -LQNAFFTVKSSEKEGALLHVLHEVIKIPTGETEAHKRAKEEVKHSK------------- 348
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAET 424
K K EVT ++ ++ E
Sbjct: 349 ------------------------------KRKRSEVTSNSHKESPTEYS---------- 368
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAA 483
T++F T V +T IL+T+G + L R + NF+ + V TD A
Sbjct: 369 --TIIFTATKHHVDYLTSILRTSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVA 426
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
ARGIDIP +S+VI DF + F+HRVGRTARAG+ G SL ES+
Sbjct: 427 ARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRESD 474
>gi|219126769|ref|XP_002183622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 531
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 122/494 (24%), Positives = 216/494 (43%), Gaps = 81/494 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVP 141
+ W LGL L+ A+ P+ VQ ++ +L + + A TGSGKT +Y +P
Sbjct: 29 LAWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALP 88
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
L++ L +D E P R L+L P E VV++ + + + + + +
Sbjct: 89 LLQMLKQG-----EVFADYERRPKRPRLLILVPTR---ELVVQITSVIKSVSHSIKLSSC 140
Query: 202 AVCGGQGWPI-----GKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
++ GG+ + + +P DV+V+TP L + F+ ++++V DE D +L
Sbjct: 141 SITGGEDYGVQRRQLNRPIDVVVATPGRLTKHWKDSNL----FLGSLEHIVVDEMDTMLE 196
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
F ++ +L+ + ++ +N VE+ L+ + + +Q
Sbjct: 197 QGFYRELRQLLYPVLYHKQADQEIN---VEQDLDAKAPRIVLTSATMTQQIQ-------- 245
Query: 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQM 375
GDSD KK+ ++++++ + F +P+ +
Sbjct: 246 KIIGDSD-------------NKKNLVNAKRHHRKVEDAGF-QVKVPM------------V 279
Query: 376 FPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGA-------ETSRTM 428
P + LH PRL++ +++V ++ L++ V A + + TM
Sbjct: 280 LPRTKVLKAAGLHKTVPRLQQVFVDVGATDKLSLLVDIVSSGGSGAAVAASLTDQQALTM 339
Query: 429 VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG------------V 476
+F NT + A L A IE YH DL+ R++ L F+ G V
Sbjct: 340 IFCNTAASCRAAQFALSEARIESLAYHGDLNSAMRSENLKRFRAAGKKNCDNALAEEPRV 399
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA-----GQYGLVTSLYTESN 531
VCTD AARG+D+P V H++ DF +A+D+LHR GRTAR G VT+L ++ +
Sbjct: 400 LVCTDLAARGLDVPQVDHIVMFDFPLNALDYLHRSGRTARGVGGDRTGNGRVTALISKRD 459
Query: 532 RDLVDTIRRAAKLG 545
+ L + I +A G
Sbjct: 460 KVLANAIEQAVLRG 473
>gi|189201219|ref|XP_001936946.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984045|gb|EDU49533.1| ATP-dependent RNA helicase MAK5 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 778
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/450 (27%), Positives = 207/450 (46%), Gaps = 63/450 (14%)
Query: 81 DDNVT-WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
D++V+ W L LS+ ++ AL F +P+ +Q +++ +L+G+DV+ A TGSGKT ++
Sbjct: 205 DEDVSAWDELELSEEMLGALAKLKFSKPTTIQKSTIPEILAGRDVIGKASTGSGKTLAFG 264
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA--DNGEPL 197
+P++E + S++ KEP +L++ P L Q+ AL A D P
Sbjct: 265 IPIVESYLAS-----RSSASKEPEDKMPIALIIAPTRELAHQINAHLIALCAKGDFDPPY 319
Query: 198 VRAVAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
+ ++ GG Q + K D++V TP L I + +F + +K++V DEAD
Sbjct: 320 I--ASITGGLSVQKQRRQLEKADIVVGTPGRLWEVISDGQGLLRKF-KQIKFLVVDEADR 376
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
LL E M E + K LE D+ + + ++E ++ + +
Sbjct: 377 LLS-----------------EGHFKEMGE--ILKVLEPDDVTDENAESDEKEEIKRQTLV 417
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
F D + +G +K + + Q+S +Y+ KK
Sbjct: 418 FSATFGKD------LQRKLAGKVKGGGSDLM--SQQQSMEYLL---------KKLQFREE 460
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432
K +F DA N + +L+E IE T+ D + ++ L F + R +VF N
Sbjct: 461 KPVFIDA-----NPMSQMASKLQEGLIEC-AGTEKDLYLYSL---LMFYTK-KRALVFTN 510
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPN 491
++ AV +T L + H ++ + R +++ F+E+ G + V TD AARG+DIP
Sbjct: 511 SISAVRRITPFLTNLALPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPR 570
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYG 521
V VI +A ++HR GRTARA G
Sbjct: 571 VELVIHYHLPRAADTYVHRSGRTARAEASG 600
>gi|357505253|ref|XP_003622915.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355497930|gb|AES79133.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 798
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 63/477 (13%)
Query: 68 VSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASV-GPVLSGKDVVI 126
V ++N ++A W L L RL++A+ GF P+ +Q A V GKDV+
Sbjct: 151 VDEENIDETEYYA-----WNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVIG 205
Query: 127 AAETGSGKTHSYLVPLIEKLCTALGDSEN-------SNSDKEPTPPRAPSLVLCPNVVLC 179
AAETGSGKT ++ +P++++L +E+ ++K T SL++ P L
Sbjct: 206 AAETGSGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTRELA 265
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRR 233
QV + A++ VR A+ GG + +P+++V+TP L + +
Sbjct: 266 LQVAKHLKAVAKHIN---VRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEK 322
Query: 234 RRMEFVRGVKYVVFDEAD-MLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDN 292
+E + + V DEAD M+ G F+ ++ +I+M L N S + + N
Sbjct: 323 HLIEL-HSLSFFVLDEADRMVQSGHFK-ELQSIIDM-------LPMSNISSEDNSKDAQN 373
Query: 293 SSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352
+T +Q ++ Q S D ++ K GSI+KK Q S
Sbjct: 374 C-VTVSSIQKKKR-QTLVFSATVALSAD-----FRKKLKRGSIQKK---------QLSTD 417
Query: 353 YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIE 412
+ TL + AG M P+A I +++E +IE T D + DA +
Sbjct: 418 GLDSIETLS----ERAG-----MRPNAAIIDLTNPSILAAKIEESFIECTEDDK-DAHLY 467
Query: 413 AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE 472
+ L + RT+VF ++ A+ ++ IL+ G+ + H + R K + F+E
Sbjct: 468 YI---LTVHGQ-GRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFRE 523
Query: 473 K-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
G+ V TD AARG+DIP V V+ SA ++HR GRTARA G +L +
Sbjct: 524 NDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALIS 580
>gi|425777534|gb|EKV15702.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
Pd1]
gi|425779558|gb|EKV17605.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
PHI26]
Length = 912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/464 (27%), Positives = 199/464 (42%), Gaps = 105/464 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS L++A+ GF P+ +Q ++ ++ KDVV A TGSGKT S+++P+IEK
Sbjct: 86 FQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEK 145
Query: 146 L---CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L T+ G A +L++ P+ L Q +++ + G L +V
Sbjct: 146 LKSHSTSFG---------------ARALIMSPSRELALQTLKVVKEMG--KGTNLT-SVL 187
Query: 203 VCGGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLC 255
+ GG G PD+I++TP L+ + M+ + +KYVVFDEAD L
Sbjct: 188 LIGGDSLEDQFGMMANNPDIIIATPGRFLH-----LKVEMDMDLSSIKYVVFDEADRLFE 242
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQDE 303
F Q+ +++ + K L +G+++P + +D + PD
Sbjct: 243 MGFAAQLTEILHGLPTNRQTLLFSATLPKSLVEFARAGLQEPSLIRLDTENKVSPD---- 298
Query: 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPIN 363
LQ+ + + + SD EG IK +P
Sbjct: 299 --LQNAFFAVKS-----SDKEGALLHILHNIIK-----------------------MPT- 327
Query: 364 GKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAE 423
G+ G L+Q NP K K +V + + E+ E
Sbjct: 328 GETQIGGKLRQ-------------EAENPTRKRKRSDVRLPS---GFKESPTEH------ 365
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDA 482
T+VFA T V + +L AG + L R + NF+ + V TD
Sbjct: 366 --STIVFAATKHHVDYLYSLLVEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTDV 423
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARGIDIP +++VI DF + F+HRVGRTARAGQ G SL
Sbjct: 424 AARGIDIPVLANVINYDFPSQPKIFIHRVGRTARAGQKGWSYSL 467
>gi|330926678|ref|XP_003301562.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
gi|311323563|gb|EFQ90355.1| hypothetical protein PTT_13094 [Pyrenophora teres f. teres 0-1]
Length = 827
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 201/444 (45%), Gaps = 62/444 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W L LS+ ++ AL F +P+ +Q +++ +L+G+DV+ A TGSGKT ++ +P+IE
Sbjct: 260 WDELELSEEMLGALAKLKFSKPTTIQKSTIPEILAGRDVIGKASTGSGKTLAFGIPIIES 319
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA--DNGEPLVRAVAV 203
+ + DK P +L++ P L Q+ AL A D P + ++
Sbjct: 320 YLASRSSASKDPEDKMPI-----ALIIAPTRELAHQINAHLIALCAKGDFDPPYI--TSI 372
Query: 204 CGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + K D++V TP L I + +F + +K++V DEAD L
Sbjct: 373 TGGLSVQKQRRQLEKADIVVGTPGRLWEVISDGQGLLRKF-KQIKFLVVDEADRL----- 426
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
F E M E + K LE D+ + + ++E ++ + + F
Sbjct: 427 ------------FSEGHFKEMGE--ILKVLEPDDVTDENAESDEKEEIKRQTLVFSATFG 472
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
D ++ +G +K + + Q+S +Y+ KK K +F D
Sbjct: 473 KD------LQKKLAGKVKGGGSDLM--SQQQSMEYLL---------KKLQFREEKPVFID 515
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
A N + +L+E IE T+ D + ++ L F + R +VF N++ AV
Sbjct: 516 A-----NPMSQMASKLQEGLIEC-AGTEKDLYLYSL---LIFYTK-KRALVFTNSISAVR 565
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQ 497
+T L + H ++ + R +++ F+E+ G + V TD AARG+DIP V VI
Sbjct: 566 RITPFLTNLALPALPLHSNMPQKARLRSIERFKERPGSILVATDVAARGLDIPRVELVIH 625
Query: 498 ADFATSAVDFLHRVGRTARAGQYG 521
+A ++HR GRTARA G
Sbjct: 626 YHLPRAADTYVHRSGRTARAEASG 649
>gi|321454164|gb|EFX65346.1| hypothetical protein DAPPUDRAFT_117344 [Daphnia pulex]
Length = 504
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/492 (26%), Positives = 213/492 (43%), Gaps = 101/492 (20%)
Query: 68 VSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
V + G + + D+ + L +S+ L L G +P+IVQ ++ V G++ +IA
Sbjct: 66 VINSQGPNPSILRDEESDFSKLLISELLTENLTKMGCTKPTIVQKLAIKSVYRGENTLIA 125
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMA 186
AETGSGKT SYL P+I+K+ S+N TP AP LV+ P LCEQ+ ++
Sbjct: 126 AETGSGKTLSYLAPVIQKILD-YKMSKNIVEGSSATPLNAPLGLVITPGRELCEQISKVC 184
Query: 187 NALSADNGEPLVRAVAVCGGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVR 240
+L + ++A V GG+ + D++ ST A+ + + R++
Sbjct: 185 QSLIENLP---IKAQCVTGGRLKRDMLNAEFAEVDILFSTIGAI-SKLTTNHIVRLD--- 237
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
+K++V DEAD LL S F+EK + + PL+M T+P
Sbjct: 238 QLKHLVLDEADTLLDDS-------------FNEKVSHFLRKC----PLQM-----TRPT- 274
Query: 301 QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL 360
EG ++G Q + +AT+
Sbjct: 275 -------------EGVYQG-------------------------------VQVVMASATI 290
Query: 361 PINGKKTAGAVLKQMFPDADW--ISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERL 418
P ++A +L Q+ P + + ++ LH P + +K++ ++ + L+E VK+
Sbjct: 291 P----RSAEEILSQVIPFSSFNKVTTQQLHRLLPHVPQKFVRISHLDKPARLLELVKK-- 344
Query: 419 EFGAETSRTM---VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KG 474
+ SR + VF+N D V+ L G+ C + +++ R F K
Sbjct: 345 ----DVSRNLPVIVFSNRSDRCDWVSMFLNENGVSCVNLNGNMAQHFRVGRFEEFLTGKQ 400
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ--YGLVTSLYTE-SN 531
V CTD +RG+D N HV+ D + D++HR GR R G G+VT+ +
Sbjct: 401 MVLSCTDVVSRGLDTTNAHHVVNYDVPNNISDYIHRCGRVGRVGHPSTGIVTTFVCHPTE 460
Query: 532 RDLVDTIRRAAK 543
+LV I AA+
Sbjct: 461 AELVQKIEYAAR 472
>gi|395853863|ref|XP_003799418.1| PREDICTED: probable ATP-dependent RNA helicase DDX28 [Otolemur
garnettii]
Length = 541
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 211/490 (43%), Gaps = 114/490 (23%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAAETGSGKT 135
+++N T++ LGL ++RAL+ + RP+ VQ+ ++ P+L G+ ++ AAETGSGKT
Sbjct: 122 LLSNEN-TFEDLGLEPHVLRALQEAAPEVVRPTNVQSRTIPPLLRGRHILCAAETGSGKT 180
Query: 136 HSYLVPLIEKLC--TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
SYL+PL+++L LG S+ S PR LVL P+ L EQV +A L
Sbjct: 181 LSYLLPLLQRLVGRPRLGSSQISA-------PRG--LVLVPSRELAEQVWAVARVLGNSL 231
Query: 194 GEPLVRAVAVCGGQGW----------PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
G ++ + GG G P DV+V+TP AL + + R+ + +
Sbjct: 232 G---LQVRELGGGHGMRRIRLRLSKQPTA--DVLVATPGALWKAL----KSRLISLEQLS 282
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
++V DEAD LL SF V
Sbjct: 283 FLVLDEADTLLDESFLELV----------------------------------------- 301
Query: 304 ENLQDEYISDEGNF-EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPI 362
+YI ++ + EG SD+E Y Q + V AT P
Sbjct: 302 -----DYILEKSHIAEGPSDLE--------------------DPYNPKAQLVLVGATFP- 335
Query: 363 NGKKTAGAVLKQMF-PDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVK--ERL 418
+ G +L ++ PD+ I+ LH P +++ ++ + +V L++ +K E+
Sbjct: 336 ---EGVGQLLSKVTSPDSLRTITSPKLHCIMPHVRQTFMRLKGAEKVTELVQILKHHEKA 392
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--V 476
+ T +VF N+ V + IL I+ + R +FQ KG +
Sbjct: 393 DRTGSTGSVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRVGIFQSFQ-KGSRDI 451
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-NRD 533
+CTD A+RG+D +V V+ DF + D++HR GR R G G V S T +
Sbjct: 452 LLCTDIASRGLDSIHVELVVNYDFPFTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVS 511
Query: 534 LVDTIRRAAK 543
LV I AA+
Sbjct: 512 LVQKIELAAR 521
>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 913
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 129/465 (27%), Positives = 198/465 (42%), Gaps = 107/465 (23%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS L++A+ GF P+ +Q ++ ++ KDVV A TGSGKT S+++P+IEK
Sbjct: 87 FQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIPMIEK 146
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A +L++ P+ L Q +++ + G L +V + G
Sbjct: 147 LKS------------HSTTFGARALIMSPSRELALQTMKVVKEMG--KGTNLT-SVLLIG 191
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G G PD+I++TP L+ + M+ + +KYVVFDEAD L F
Sbjct: 192 GDSLEDQFGMMASNPDIIIATPGRFLH-----LKVEMDMDLSSIKYVVFDEADRLFEMGF 246
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQDEENL 306
Q+ +++ + K L +G+++P + +D + PD L
Sbjct: 247 AAQLTEILHGLPTNRQTLLFSATLPKSLVEFARAGLQEPSLIRLDTENKVSPD------L 300
Query: 307 QDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKK 366
Q+ + + + SD EG IK +P G+
Sbjct: 301 QNAFFAIKS-----SDKEGALLHILHDIIK-----------------------MPT-GET 331
Query: 367 TAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS- 425
G L+Q NP K K +V RL G + S
Sbjct: 332 DIGVRLRQ-------------EAENPSRKRKRSDV---------------RLPSGFKESP 363
Query: 426 ---RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD 481
T+VFA T V + +L AG + L R + NF+ + V TD
Sbjct: 364 TKHSTIVFAATKHHVDYLYSLLVEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTD 423
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARGIDIP +++VI DF + F+HRVGRTARAGQ G SL
Sbjct: 424 VAARGIDIPVLANVINYDFPSQPKIFIHRVGRTARAGQKGWSYSL 468
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 208/479 (43%), Gaps = 105/479 (21%)
Query: 67 VVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVI 126
+V +KN ++D A D V + + LS ++ +A+ + GF PS +QA ++ ++ GKD++
Sbjct: 1 MVENKNIANDQDKAKDKVKFGEIELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIG 60
Query: 127 AAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186
A+TG+GKT ++ +P+ E L P R +LVLCP L QV +
Sbjct: 61 QAQTGTGKTATFGIPMAETL--------------NPRDGRVQALVLCPTRELAIQVAQEI 106
Query: 187 NALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVR-GVKYV 245
+ + N ++A+ V GGQ +ID R++ +R GV+ V
Sbjct: 107 SKIGRQND---LKALPVYGGQ-------------------SID----RQIRALRYGVQVV 140
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
+ +L LSR K L ++N + D DE
Sbjct: 141 IGTPGRIL--------------------DHLSR-------KTLRLNNVRMVVLDEADE-- 171
Query: 306 LQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGK 365
+ D G E D+E + +ET +Q + +AT+P +
Sbjct: 172 -----MLDMGFVE---DIEAILKETPE-----------------ERQTLLFSATMPGPIQ 206
Query: 366 KTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS 425
+ A +K+ P+ IS + L P +++ + E +VDAL R+ E
Sbjct: 207 QLARQYMKE--PEFVTISRDKLTV--PLIEQVYYECKESQKVDALC-----RILDMEEIG 257
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+++F T V + L+T G H DL+ +R + + F++ K + + TD AA
Sbjct: 258 SSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAA 317
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+D+ NV+HVI D ++HR+GRT RAG+ G+ +L + I R K
Sbjct: 318 RGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTK 376
>gi|294879077|ref|XP_002768565.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239871175|gb|EER01283.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 629
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/510 (24%), Positives = 223/510 (43%), Gaps = 123/510 (24%)
Query: 76 DTFFADDNV-TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
+ F + D V ++ GL L+ +L +SG P+ Q + ++ G+ V++ A+TGSGK
Sbjct: 33 NRFTSFDRVNSFHRFGLDKELLVSLHSSGAVTPTRTQEVCIPAIMEGQSVLVVAQTGSGK 92
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194
T +Y++P++ +L + D+ +K PRA ++L P L QV+++ L+A
Sbjct: 93 TMAYVLPILHRLLRSNPDNLYPLENK----PRA--VILVPTRELAIQVIKVVRQLTAQGC 146
Query: 195 EPLVRAVAVCG------GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
+ G + G+ DV+V TPA LL ++ + E V ++V D
Sbjct: 147 REVTSTGLAAGLSYVKEARALNQGRGDVVVCTPARLLLHLMKGNVKLGE----VTHLVID 202
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EAD LC + F EK+++ + + K + ++ + P
Sbjct: 203 EADT-LCDT-------------FYEKEVADV----ISKTFKARGAARSAP---------- 234
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
+ T++G++ FV ++P +
Sbjct: 235 --------------LVAFVGATRTGAVSN-----------------FVRTSVPTH----- 258
Query: 369 GAVLKQMF-PDADWISGNYLHFHNPRLKE-KWIEVTV------DTQVDALIEAVKERLEF 420
V+ Q+ PDA H P L++ W V V + +AL++ ++ER
Sbjct: 259 -VVVNQVVAPDA--------HMTVPALEQVSWYTVEVFVPMGGRKRSNALVDTLEERQVR 309
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGG--- 475
G +T++F NTV V K+L+ G H +++ + R K +F+ K G
Sbjct: 310 G---QKTLIFTNTVARCRGVAKMLEAEGYSVSLLHGEMAFKNRRKEFASFKGASKTGTPA 366
Query: 476 --VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA---------------G 518
+ VCT+ A+RG+D +V HV+ DF + D++HRVGRTARA G
Sbjct: 367 KEIMVCTNLASRGLDFDDVGHVVMYDFPYTLADYIHRVGRTARAGWKTITKKRKTFSLPG 426
Query: 519 QYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+ G VT L+ + N +V I+ A++ +P+
Sbjct: 427 RAGRVTVLFRKKNLPVVRKIQEASRASRPL 456
>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
Length = 807
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 121/473 (25%), Positives = 207/473 (43%), Gaps = 87/473 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
WK L ++ +E G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 380 WKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 439
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVC 204
+ T +SD+ P +++L P L +Q+ + G+PL +R VAV
Sbjct: 440 ITTLPKIDRIEDSDQGPY-----AIILAPTRELAQQI----EEETIKFGKPLGIRTVAVI 490
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG QG+ + +++++TP L++ ++ R + YVV DEAD ++ F
Sbjct: 491 GGISREDQGFRLRMGCEIVIATPGRLIDVLE----NRYLVLSRCTYVVLDEADRMIDMGF 546
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
E V+K LE + +PD D E
Sbjct: 547 ----------------------EPDVQKILEYIPVTNQKPDTDDAE-------------- 570
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
D E + + +SG + +Q + AT+P ++ A + L++ P
Sbjct: 571 ---DPEKMMQNFESGK-------------HKYRQTVMFTATMPPAVERLARSYLRR--PA 612
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
+I G+ H R+++K I ++ + L+E + E ++F N
Sbjct: 613 VVYI-GSAGKPHE-RVEQKVILMSEGEKRKKLLEVLASGFE-----PPIIIFVNQKKGCD 665
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHV 495
+ K L+ G H E+R L N K G + V TD A RGIDI +VS V
Sbjct: 666 VLAKSLEKMGYNACTLHGGKGQEQREFALSNL--KAGAKDILVATDVAGRGIDIQDVSMV 723
Query: 496 IQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+ D A + D++HR+GRT RAG+ G+ + T+ + + +++A L PV
Sbjct: 724 LNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFYDLKQAI-LESPV 775
>gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|453073421|ref|ZP_21976361.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
PR4]
gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
gi|452756185|gb|EME14602.1| ATP-dependent RNA helicase DeaD [Rhodococcus qingshengii BKS 20-40]
Length = 591
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 198/471 (42%), Gaps = 116/471 (24%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L + DR+++AL + G+ PS +QAA++ P+L GKDVV A+TG+GKT ++ VP++
Sbjct: 12 TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLS 71
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ T++ ++ +LVL P L QV SA P + + +
Sbjct: 72 RIDTSIKQTQ--------------ALVLAPTRELALQVAEAFGKYSAHI--PGLNVLPIY 115
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ + + V+V TP ++++++ + ++ +KY+V DEAD +L F
Sbjct: 116 GGQSYGVQLSGLRRGAHVVVGTPGRVIDHLE---KGTLDLT-NLKYLVLDEADEMLKMGF 171
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
Q V R++ +
Sbjct: 172 QEDVERILR------------------------------------------------DTP 183
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
GD V L T GSI RR+ SKQY+ + + K + + + Q +
Sbjct: 184 GDKQV-ALFSATMPGSI-----RRI------SKQYLNNPVEITVKSKTSTASNITQRY-- 229
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
I+V ++DAL V E F A ++F T A
Sbjct: 230 --------------------IQVAHQRKLDALTR-VLEVEAFEA----MIIFVRTKQATE 264
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQ 497
+ + L+ G + D+ +R +T+ + + V TD AARG+D+ +SHV+
Sbjct: 265 DLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDVAARGLDVDRISHVVN 324
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D ++HR+GRT RAG+ G R L+ +I +A + QP+
Sbjct: 325 YDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEKATR--QPL 373
>gi|422294697|gb|EKU21997.1| ATP-dependent RNA helicase DDX23/PRP28 [Nannochloropsis gaditana
CCMP526]
Length = 820
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 200/470 (42%), Gaps = 99/470 (21%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ L L + +E G+ PS +Q A++ + +D++ AETGSGKT ++ +P+I
Sbjct: 388 WEEANLPASLRKTVEGMGWKEPSPIQRAAIPVGMGRRDIIGIAETGSGKTGAFAIPMI-N 446
Query: 146 LCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
C L + TP P +LV+ P L EQ+ L G + C
Sbjct: 447 YCLTLPAEHRTR-----TPEEGPLALVMAPTRELAEQIEAQVAILIEGTG------LKSC 495
Query: 205 GGQGWPIGKP------------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
G G GKP D+++ TP L + ID R + Y+V DEAD
Sbjct: 496 SGVG---GKPIEDQAFALREGVDILIGTPGRLKDLIDS----RYLVLNQCNYIVLDEAD- 547
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
R+++M F+E+ ++ ++ G L EN
Sbjct: 548 -----------RMVDMG-FEEQVVAVLDTMG---------------GLLKSEN------E 574
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
+E + + D+ +K Q + +AT+P ++ A + L
Sbjct: 575 EEADRQADA---------------------AQKGEQLYRVTAMFSATMPPAVERIARSYL 613
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432
+ A G N R++++ I T + A+++ L + + +VF N
Sbjct: 614 RA---PATIKIGEANSGKNKRIEQRLIFTTEPGKRKAVVDL----LTSPKKEDKFIVFVN 666
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCTDAAARGIDI 489
A + + L+ I C H S ++R +L F + GVF V TD AARG+DI
Sbjct: 667 AKRACDVLARHLEQTRISCGILHGGKSQDQREASLEAF--RNGVFTVLVATDVAARGLDI 724
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
P+VSHVI D ++ HR+GRT RAG+ GL T+L TE++ ++ ++
Sbjct: 725 PDVSHVINYDMPAKIENYCHRIGRTGRAGKEGLATTLLTENDSEVFHDLK 774
>gi|401402572|ref|XP_003881282.1| putative RNA helicase [Neospora caninum Liverpool]
gi|325115694|emb|CBZ51249.1| putative RNA helicase [Neospora caninum Liverpool]
Length = 405
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 318 EGDSDVEGLTEETKSG---SIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ 374
E D +EG + G + ++ D R+ + +R QYIF AAT+P G K+ ++ +
Sbjct: 110 EADMLLEGGYRQAMEGIFTAFRRAD-RQSAASGRRRTQYIFAAATIPDRGPKSVRKIISR 168
Query: 375 MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV 434
+ P A + LH H +L+++++EV D + + RL+ + M+F NT
Sbjct: 169 LCPRATFFCTESLHQHREQLQQEFVEVPAGISDDERVNLLLSRLKKLGGDDKVMIFCNTA 228
Query: 435 DAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPN 491
++ + L+ A + ++ ++R+ L F K + VCTDAA+RG+DI
Sbjct: 229 QIARSLFEALEKALPTTRPKLFSSEIDQKDRSFNLGLFARGKSRILVCTDAASRGLDIAG 288
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
V+ V+Q DFA SAV LHRVGR AR G + Y +S R LVD IRRAA+
Sbjct: 289 VTLVVQYDFALSAVAHLHRVGRVARGEHPGRALNFYFDSQRALVDVIRRAAR 340
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 162 PTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG------KP 214
P P P ++V+ P L QVV A L + P+ + + WP G P
Sbjct: 18 PIPRHHPYAVVIVPTRELALQVVAWARRLCRKS--PITAQLMLGTYTRWPFGTLAIPTSP 75
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
D++V TP L + + + R ++ + DEADMLL G ++ + + FR ++
Sbjct: 76 DLVVCTPPVLAPFVKGGHAKDLTPFREIQMLALDEADMLLEGGYRQAMEGIFTAFRRADR 135
Query: 275 Q 275
Q
Sbjct: 136 Q 136
>gi|443896134|dbj|GAC73478.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 886
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 141/514 (27%), Positives = 223/514 (43%), Gaps = 99/514 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG---------------------KDV 124
W L L L RAL + GF P+ +Q S+ P+ G +DV
Sbjct: 229 WSHLPLHAALKRALAHKGFHSPTEIQNRSI-PLALGLQQDDSSDSDEPSTSSSAFKKRDV 287
Query: 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT----PPRAPSLVLCPNVVLCE 180
V ++TGSGKT +Y +P++ L ++EN S PT PP +L+LCP L
Sbjct: 288 VGVSQTGSGKTLAYGLPILNYL---FHNAENVAS--APTHGDVPPPLGALILCPTRELAL 342
Query: 181 QV------VRMANALSAD--NGEPLVR---AVAVCGG----------QGWPI-GKPDVIV 218
QV V ++ L D + LVR VCGG QG D+IV
Sbjct: 343 QVSAHLTDVIRSSCLVDDTLSYAKLVRRPQIAVVCGGMSEHKQRRLLQGRSRRAGVDIIV 402
Query: 219 STPAAL--LNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQNQVIRLINMFRFDEKQ 275
+TP L + +D + R ++ V+++V DEAD M+ G F ++ ++N+ E Q
Sbjct: 403 ATPGRLWEMTRLDDELAAR---IKQVRFLVLDEADRMVQVGHF-AEMEHILNLVHRAEAQ 458
Query: 276 LSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335
+ + G + D + + EG + + T S ++
Sbjct: 459 RPKEGQDGQQS---------------DSDGESGAVVVGEGVRPNAAMQTFVFSATLSKAL 503
Query: 336 KKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR-- 393
+ + +R RK Q +K+ + K++AG+ L+++ D+ S + P
Sbjct: 504 QT-NLKRRRKLPQFTKKR---------HSKRSAGSTLEELLERIDFRSSPAIVDLTPAQG 553
Query: 394 ----LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGI 449
L E +E V DA + R R++VF N++D + ++ IL G+
Sbjct: 554 LPSGLMETKLEC-VSKDKDAYLYYFLLRY-----PGRSLVFVNSIDGIRRLSPILAQLGL 607
Query: 450 ECYCYHKDLSLEERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
CY H L ++R K L F+ + + TD AARG+DIP+V HV+ SA +
Sbjct: 608 VCYPIHSQLQQKQRLKNLDRFRSAASNCILLATDVAARGLDIPSVDHVVHYQLPRSADTY 667
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
+HR GRTARAG G+ +L + L + RA
Sbjct: 668 IHRSGRTARAGTSGVSLALIEPREKMLWSQLSRA 701
>gi|426243619|ref|XP_004015648.1| PREDICTED: probable ATP-dependent RNA helicase DDX28 [Ovis aries]
Length = 505
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 236/552 (42%), Gaps = 124/552 (22%)
Query: 16 SSPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRG--FA---AAAAVVSD 70
+SPP L + +S L+++ P SF+P V WK R R F+ A +
Sbjct: 29 TSPPGLDLQ---TSPLLNSTDPPSFHPSAV------GWKHRRARQDYFSIERAQHEAPAL 79
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS FAD LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 80 RNLSSKGSFAD-------LGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLRGRHILCAA 132
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y++PL+++L LG + ++ + P P RA LVL P+ L EQV +A
Sbjct: 133 ETGSGKTLGYMLPLLQRL---LGQ-PSLDASRIPAP-RA--LVLVPSRELAEQVRAVARP 185
Query: 189 LSADNGEPLVRAVAVCGGQGWP-----IGK---PDVIVSTPAALLNNIDPKRRRRMEFVR 240
L + G +R + GG G + K DV+V+TP AL + + + + R
Sbjct: 186 LGSSLG---LRVQELEGGHGMSRIRLQLSKHPPADVLVATPGALWKAL---KGQLISLAR 239
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
+ ++V DE D L ++ES +E
Sbjct: 240 -LSFLVLDEVDTL-------------------------LDESFLE--------------- 258
Query: 301 QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL 360
L D + EG +D+ + + Q + V AT
Sbjct: 259 -----LVDYILEKSHIAEGPADL--------------------KDPFNPKAQLVLVGATF 293
Query: 361 PINGKKTAGAVLKQM--FPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE-- 416
P G +L ++ I+ + LH P +K+ ++ + +V L++ +K+
Sbjct: 294 P----DGVGQLLSKVASLDSLTTITSSKLHCIMPHVKQTFLRLKGAEKVTELVQILKQHD 349
Query: 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG- 475
R T +VF N+ V + IL I+ + RA +FQ KG
Sbjct: 350 RAHRTGSTGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQ-KGSR 408
Query: 476 -VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-N 531
+ +CTD A+RG+D V VI DF + D++HR GR R G G V S T +
Sbjct: 409 DILLCTDIASRGLDSTQVEIVINYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWD 468
Query: 532 RDLVDTIRRAAK 543
LV I AA+
Sbjct: 469 VSLVQKIELAAR 480
>gi|348502929|ref|XP_003439019.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 [Oreochromis
niloticus]
Length = 806
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 201/456 (44%), Gaps = 86/456 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
WK L ++ ++ G+ P+ +Q ++ L +D++ AETGSGKT ++L+PL+
Sbjct: 379 WKEYPLPAHILEVIDKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVW 438
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVC 204
+ T +SD+ P +++L P L +Q+ + G+PL +R VAV
Sbjct: 439 ITTLPKIDRIEDSDQGPY-----AVILAPTRELAQQI----EEETIKFGKPLGIRTVAVI 489
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG QG+ + +++++TP L++ ++ R + YVV DEAD ++ F
Sbjct: 490 GGISREDQGFRLRMGCEIVIATPGRLIDVLE----NRYLVLSRCTYVVLDEADRMIDMGF 545
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
E V+K LE + +PD ++ E
Sbjct: 546 ----------------------EPDVQKILEYIPVTNQKPDTEEAE-------------- 569
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
D E +T +SG + +Q + AT+P ++ A + L++ P
Sbjct: 570 ---DPEKMTMNFESGK-------------HKYRQTVMFTATMPPAVERLARSYLRR--PA 611
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
+I G+ H R+++K + ++ + L+E L G E ++F N
Sbjct: 612 VVYI-GSAGKPHE-RVEQKVLLMSEGEKRKKLLEV----LSHGFEPP-IIIFVNQKKGCD 664
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHV 495
+ K L+ G H E+R L N K G + V TD A RGIDI +VS V
Sbjct: 665 VLAKSLEKMGYNACTLHGGKGQEQREFALSNL--KAGAKDILVATDVAGRGIDIQDVSMV 722
Query: 496 IQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
I D A + D++HR+GRT RAG+ G+ + T+ +
Sbjct: 723 INYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKED 758
>gi|118400980|ref|XP_001032811.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89287156|gb|EAR85148.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 481
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/474 (26%), Positives = 214/474 (45%), Gaps = 79/474 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQA-ASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+K+L L+ L L+ + P+ +Q + V++G++ V+ AETGSGKT YL+P++
Sbjct: 30 FKNLHLNPYLFANLKENKISEPTSIQVKVCLEHVINGENAVVTAETGSGKTLCYLLPVMN 89
Query: 145 KLCTALGD------SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ + D +NS PR +++L P L QV M L N +
Sbjct: 90 HILSKKLDLAPEVYRQNS--------PRG-AIILVPTKELGAQVYAMIRRLDKKNKLDVS 140
Query: 199 RAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
R ++ G PI +L R + F V+ + +D+ D+L+
Sbjct: 141 RTGSI--GYIAPISDDKQPKDARTSL-------RLNDLAFESVVRGIDWDQLDILVSTPS 191
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
Q L M + ++ P ++D + + DE +L
Sbjct: 192 Q-----LDQMLKLKDQ----------TNPYQVDPKFI----VIDEFDL----------LL 222
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQR-SKQYIFVAATLPINGKKTAGA-VLKQMF 376
GD+++ T SI + + V N Q ++Q+I A+ P+ G + ++F
Sbjct: 223 GDTNIARST-----ISILNR-FCNVHNNPQNINRQFILTGASFPLRINNEKGTQFIDKVF 276
Query: 377 PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA---------LIEAVKERLEFGAETSRT 427
I +F+ K K + + V+ ++A L++ +K+ + + R
Sbjct: 277 KRPICIESE--NFYKISEKMKHVVIRVNDYLNANPNFSIQDILVDQIKK-----STSQRI 329
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
+VF + + ++ K L+ I+ +H +L+ E+R TL NF E K V V TD A+RG
Sbjct: 330 IVFVQSQASSESIAKHLQDHDIKALSFHANLNTEQRIDTLANFDEGKVRVLVSTDLASRG 389
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+D NV HVIQ DFA AV FLHRVGRT R G+ G+VTS E++ L + +++
Sbjct: 390 LDFQNVDHVIQFDFALDAVSFLHRVGRTCRMGRNGVVTSFVRENDEFLYEKVQK 443
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 202/456 (44%), Gaps = 100/456 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +L L++ L RA+ + G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL++
Sbjct: 4 SFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L EN+++ P RA LVL P L +QV + AL A + + +R+ V
Sbjct: 64 RLMR----HENASASPARHPVRA--LVLLPTRELADQVAQQI-ALYAKHTK--LRSTVVF 114
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GG KP I E +GV+ +V +L +N V+
Sbjct: 115 GGMDM---KPQTI-------------------ELKKGVEVLVATPGRLLDHIEAKNVVLN 152
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ DE RM + G PDLQ
Sbjct: 153 QVEYVVLDEAD--RMLDIGF------------LPDLQ----------------------- 175
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
R+ +S+ + +AT K+ AG+ L+ D I
Sbjct: 176 -----------------RILSYLPKSRTTLLFSATFSPEIKRLAGSYLQ----DPVTIEV 214
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
+ +++++ +VT D + A+ +KER + + +F+N+ +T+ L
Sbjct: 215 ARPNETASTVEQRFYKVTDDDKRYAIRSVLKER-----DIRQAFIFSNSKLGCARLTRAL 269
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFA 501
+ G+ H D S +ER K L F K G + VCTD AARG+DI +V V D
Sbjct: 270 ERDGLRAAALHGDKSQDERLKALEAF--KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVP 327
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVD 536
+A D++HR+GRT RAG GL +L T+ + R++ D
Sbjct: 328 FNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVAD 363
>gi|410983743|ref|XP_003998197.1| PREDICTED: probable ATP-dependent RNA helicase DDX28 [Felis catus]
Length = 539
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 213/495 (43%), Gaps = 116/495 (23%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS + FAD LGL R++RAL+ + RP+ VQ++++ +L G ++ AA
Sbjct: 119 RNLSSKSSFAD-------LGLEPRVLRALQEAAPEVVRPTTVQSSTIPSLLRGCHILCAA 171
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT YL+PL+++L LG N +S P P L+L P+ L EQV +A
Sbjct: 172 ETGSGKTLGYLLPLVQRL---LGQP-NLDSHSLPAPR---GLILVPSRELAEQVRAVAQP 224
Query: 189 LSADNGEPLVRAVAVCGGQGW-----------PIGKPDVIVSTPAALLNNIDPKRRRRME 237
L + G ++ + GG G P+ DV+V+TP AL + + ++
Sbjct: 225 LGSSLG---LQVRDLGGGHGMSRIRMQLSKQPPV---DVLVATPGALWKAL----KSQLI 274
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
++ + Y+V DEAD L DE L M
Sbjct: 275 SLKQLSYLVLDEADTL-----------------LDESFLELMYYI--------------- 302
Query: 298 PDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVA 357
L+ YI+ EG +D+ + + Q + V
Sbjct: 303 --------LEKSYIA-----EGPADL--------------------KDPFNPKAQLVLVG 329
Query: 358 ATLPINGKKTAGAVLKQMF-PDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVK 415
AT P + G +L ++ PD+ I+ + LH P +++ ++ + +V L++ +K
Sbjct: 330 ATFP----EGVGQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKGAEKVTELVQILK 385
Query: 416 E--RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK 473
+ ++ + +VF N+ V + IL I+ + R FQ K
Sbjct: 386 QHDKVYRTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRTGIFQCFQ-K 444
Query: 474 GG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTE 529
G + +CTD A+RG+D +V V+ DF + D++HR GR R G G V S T
Sbjct: 445 GSRDILLCTDIASRGLDSSHVDLVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTH 504
Query: 530 S-NRDLVDTIRRAAK 543
+ LV I AA+
Sbjct: 505 PWDVSLVQKIELAAR 519
>gi|294875356|ref|XP_002767282.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239868845|gb|EEQ99999.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 629
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 129/514 (25%), Positives = 220/514 (42%), Gaps = 131/514 (25%)
Query: 76 DTFFADDNV-TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
+ F + D V ++ GL L+ L +SG P+ Q + ++ G+ V++ A+TGSGK
Sbjct: 33 NRFTSFDRVNSFHRFGLDKELLVGLHSSGAVTPTRTQEVCIPAIMEGQSVLVVAQTGSGK 92
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194
T +Y++P++ +L + D+ +K PRA ++L P L QV D+
Sbjct: 93 TMAYVLPILHRLLRSNPDNLYPLENK----PRA--VILVPTRELAIQVGVFWTLFGRDS- 145
Query: 195 EPLVRAVAVCG----------GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
+R V G + G+ DV+V TPA LL ++ + E V +
Sbjct: 146 ---IREVTSTGLAAGLSYVKEARALNQGRGDVVVCTPARLLLHLMKGNVKLGE----VTH 198
Query: 245 VVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
+V DEAD LC + F EK+++ + + K + ++ + P
Sbjct: 199 LVIDEADT-LCDT-------------FYEKEVADV----ISKTFKARGAARSAP------ 234
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING 364
+ T++G++ FV ++P +
Sbjct: 235 ------------------LVAFVGATRTGAVSN-----------------FVRTSVPTH- 258
Query: 365 KKTAGAVLKQMF-PDADWISGNYLHFHNPRLKE-KWIEVTV------DTQVDALIEAVKE 416
V+ Q+ PDA H P L++ W V V + +AL++ ++E
Sbjct: 259 -----VVVNQVVAPDA--------HMTVPALEQVSWYTVEVFVPMGGRKRSNALVDTLEE 305
Query: 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKG 474
R G +T++F NTV V K+L+ G H +++ + R K +F+ K
Sbjct: 306 RQVRG---QKTLIFTNTVARCRGVAKMLEAEGYSVSLLHGEMAFKNRRKEFASFKGASKT 362
Query: 475 G-----VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA------------ 517
G + VCT+ A+RG+D +V HVI DF + D++HRVGRTARA
Sbjct: 363 GTPAKEIMVCTNLASRGLDFDDVGHVIMYDFPYTLADYIHRVGRTARAGWKTITKKRKTL 422
Query: 518 ---GQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G+ G VT L+ + N +V I+ A++ +P+
Sbjct: 423 SLPGRAGRVTVLFRKKNLPVVRKIQEASRASRPL 456
>gi|149248004|ref|XP_001528389.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|152032662|sp|A5DU73.1|PRP28_LODEL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
gi|146448343|gb|EDK42731.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 597
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 114/476 (23%), Positives = 206/476 (43%), Gaps = 91/476 (19%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+W GL +++ +L++ GF +P+ VQ AS+ L +DVV AETGSGKT ++L+PL+
Sbjct: 186 SWDESGLDPKILASLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLH 245
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D N +K P A LVL P L Q+ + A G +++
Sbjct: 246 YLSRV--DGNYLNYEKVRNEPLA--LVLAPTRELALQITQEAEKFGKQLG---FNVLSII 298
Query: 205 GGQGWP----------IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
GG+ + +G+ ++V TP LL++++ R+ + F + Y+V DEAD +
Sbjct: 299 GGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVE---RKILNFSK-CYYLVMDEADRM 354
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNES--GVEKPLEMDNSSLTQPDLQDEENLQDEYI 311
+ F+ + +LIN+ +EK + ++ + K L M ++ P ++
Sbjct: 355 IDMGFEKDLNKLINLLPKNEKLSTTIDGKLFHLTKRLTMMYTATISPPIE---------- 404
Query: 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAV 371
++ K+Y YI++ AG
Sbjct: 405 ------------------------------KITKSYLIDPAYIYIGG---------AGEA 425
Query: 372 LKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFA 431
L + D++S + E +++ +++ K R + ++FA
Sbjct: 426 LDNIDQHFDYLS-------------TYAESARLSKLIKVVQGHKRR----NRNALVIIFA 468
Query: 432 NTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIP 490
N ++ L+ + H S E R + L +F+ + + V TD AARGID+P
Sbjct: 469 NFKHVCDVLSLELEQNNLLNVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVP 528
Query: 491 NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
NVS VI + +++HR+GRT RAG G + +++ + +++ K G+
Sbjct: 529 NVSLVINYQMSKKFDEYIHRIGRTGRAGNLGESYTFLDDADAETFMPLKKFLKSGR 584
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 144/477 (30%), Positives = 214/477 (44%), Gaps = 89/477 (18%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++SLGLS LI AL P+ +Q+ ++ VL+G D IAAETGSGKT SYL+
Sbjct: 350 ENKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGKTLSYLL 409
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++E + S+ P PRA L+L P+ +L QV ++ L V+
Sbjct: 410 PIVE----GIKKSDAQGDFVRPGRPRA--LILVPHRLLAMQVANVSKRLGK-----AVKF 458
Query: 201 VAVC--GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
C GG Q + KP DV+V+TP LL + K + VKY+V DEAD
Sbjct: 459 STFCVMGGDRISRQKSAMEKPLDVMVATPQRLLELLQNK----YVSLADVKYLVLDEADA 514
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
L F+E+ L+ + + V +PL ++ S
Sbjct: 515 L-----------------FEEQFLAEI--TTVLRPLIERRKAIV--------------AS 541
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
E +G + T Q +FV AT + +
Sbjct: 542 AEAEAQGQAPQRTFT----------------------PLQVMFVCAT----KMQHLVQAI 575
Query: 373 KQMFPDADWISGNY--LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVF 430
+Q FP + LH L ++I+V V T + L E +KE + G + S T++F
Sbjct: 576 RQYFPFGHIAAATTPTLHRALANLNHRFIDV-VGT-IGKLSE-LKELAKKGFK-SPTLIF 631
Query: 431 ANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDI 489
+ +++V V L GI+ H + +R +F Q + V VCTD AARG+D
Sbjct: 632 CDGLESVTWVHHRLSEFGIKAERLHSQIQHRDRLTIWKSFLQGESKVLVCTDLAARGLDA 691
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
P V HV+ D S +++HR GR RAG+ G VT+LY+ S R LV I+ + GQ
Sbjct: 692 PMVEHVVMFDPPRSHSEYVHRAGRAGRAGRTGTVTTLYSSSERRLVKDIQERIEKGQ 748
>gi|219119017|ref|XP_002180275.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408532|gb|EEC48466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 750
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 16/206 (7%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH---FHNPRLKEKWIEV-TVDTQV 407
Q++FVAATLP G ++ A LK+ FP ++ +H + R + W+E + T++
Sbjct: 328 QHVFVAATLPDFGTRSVDAYLKKKFPYVSQVTMAGMHNARHYGLREQTLWMEEESKKTRM 387
Query: 408 DALIEAVKERL-EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
+ L+E + E G + + MVF N+VD V + L+ AG++ YH +SL+ER T
Sbjct: 388 EKLVELFGTPVTEGGLQDEKVMVFLNSVDDVEGANQALQRAGLKVLPYHAKVSLDERTAT 447
Query: 467 LVNFQE--------KGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L F+ +G V VC+D AARGID+P V+ V+Q FA + V LHR+GR R
Sbjct: 448 LDRFRRYDPKSPDGEGTVPILVCSDLAARGIDVPGVNTVVQLQFAGNVVAHLHRMGRCGR 507
Query: 517 AGQ-YGLVTSLYTESNRDLVDTIRRA 541
AGQ G Y R+LV+ +++A
Sbjct: 508 AGQRTGRGIVFYDAKERELVEVVQQA 533
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 60/256 (23%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGL-SDRLIRALENSGFGRPSIVQAASVGPVL 119
A+A++V +D + FF+ D+ + SLG+ S L+ +E G RP+ VQAA+ +
Sbjct: 72 LASASSVDAD-----NVFFSQDHADFASLGIQSPVLLERIEALGLRRPTAVQAAAYRDIS 126
Query: 120 SGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178
+ + DV++ AETG+GKT +YL+PL++ + ++ ++N+ RA ++L PN L
Sbjct: 127 AAEGDVMVGAETGTGKTLAYLLPLLDDILQRKANAADTNTSLGYDYARA--IILVPNKEL 184
Query: 179 CEQVVRMANALSA-------------------------------------------DNGE 195
+QVVRMA +LS + +
Sbjct: 185 VQQVVRMAVSLSGGRQSLVYGGSALPDAANLPPTDDATLAKDTVRLAILPGGLRELQDFQ 244
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAAL-LNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P +A+ + GG P+ D+++ST AAL + + P ++ ++ +V DEADMLL
Sbjct: 245 PFRKAIGL-GGSEPPV---DLVISTLAALGVLGLKPA---NIDMFGDIRTLVVDEADMLL 297
Query: 255 CGSFQNQVIRLINMFR 270
G + + ++ FR
Sbjct: 298 DGGYIRPLENVLMGFR 313
>gi|335289245|ref|XP_003355824.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Sus
scrofa]
Length = 540
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 207/491 (42%), Gaps = 108/491 (21%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS FAD LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 120 RNLSSKDSFAD-------LGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLGGRHILCAA 172
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y++PL+++L LG + +S + P P LVL P+ L EQV +A
Sbjct: 173 ETGSGKTLGYMLPLLQRL---LGQP-SLDSCRIPAPR---GLVLVPSRELAEQVRAVAQP 225
Query: 189 LSADNGEPLVRAVAVCGGQGWP-----IGK---PDVIVSTPAALLNNIDPKRRRRMEFVR 240
L + G ++ + GG G + K DV+V+TP AL + + ++ +
Sbjct: 226 LGSSLG---LQVRELGGGHGMSRIRLQLSKQPPADVLVATPGALWKGL----KSQLISLE 278
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
+ ++V DEAD L ++ES +E
Sbjct: 279 QLSFLVLDEADTL-------------------------LDESFLE--------------- 298
Query: 301 QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL 360
L D + EG +D+ + + Q + V AT
Sbjct: 299 -----LVDYILEKSHIAEGPADL--------------------KDPFNPKAQLVLVGATF 333
Query: 361 P--INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE-- 416
P ++ + A L + I+ + LH P +K+ ++ + +V L++ +K+
Sbjct: 334 PEGVSQLLSKAACLDSL----TTITSSKLHCIMPHVKQTFMRLKGAEKVTELVQILKQHD 389
Query: 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-G 475
R +VF N+ V + IL I+ + RA +FQ
Sbjct: 390 RAYRTGSAGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQRGSQD 449
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-NR 532
+ +CTD A+RG+D V VI DF + D++HR GR R G G V S T +
Sbjct: 450 ILLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSKVPGTVISFVTHPWDV 509
Query: 533 DLVDTIRRAAK 543
LV I AA+
Sbjct: 510 SLVQKIELAAR 520
>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388, partial [Aureococcus
anophagefferens]
Length = 589
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/464 (23%), Positives = 201/464 (43%), Gaps = 85/464 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W L + L+ A+ ++G+ PS +Q ++ L +D++ AETGSGKT ++ +P+I
Sbjct: 178 WGEADLGEPLLMAIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRY 237
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ S +D P +LV+ P L Q+ L+A + V G
Sbjct: 238 ISKLPAARIASLADDGPL-----ALVMAPTRELATQIAGECKKLTAHMD---MNVTTVVG 289
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + + ++IV TP + + +D + + YVV DEAD ++ F+
Sbjct: 290 GMSIEDQAFVLREGVEIIVGTPGRIQDCLDTQ----YLVLNQANYVVLDEADRMIDMGFE 345
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
QV ++ EM L++ D++ E+
Sbjct: 346 PQVHSILE---------------------EMGGLLLSEDDIEMEQ--------------- 369
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA 379
++ +R Y+ + + +AT+P +K A L+ A
Sbjct: 370 ----------------QRLAVQRGEACYRITAMF---SATMPSAVEKLAKKFLRH---PA 407
Query: 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
G+ N R+ + + + + +A+++ ++++ + +VF N A
Sbjct: 408 IVCIGDEDSGKNKRIAQHVLYIAEAAKKNAVVDILRKK----KAQDKYLVFCNEKKGCDA 463
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVI 496
+ K+L TAG+ H + E R TL + K G V V TD A RG+DIP+V+HV+
Sbjct: 464 LAKVLSTAGLRSSVLHGGKTQEHRDATLAAY--KAGSVTVLVATDVAGRGLDIPDVAHVV 521
Query: 497 QADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D ++ HR+GRT RAG+ G+ T+L T+S+ ++ +R+
Sbjct: 522 NYDMPLKIENYSHRIGRTGRAGKDGVATTLLTDSDEAMMYDLRQ 565
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 202/456 (44%), Gaps = 100/456 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +L L++ L RA+ + G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL++
Sbjct: 4 SFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L EN+++ P RA LVL P L +QV + AL A + + +R+ V
Sbjct: 64 RLMR----HENASASPARHPVRA--LVLLPTRELADQVAQQI-ALYAKHTK--LRSTVVF 114
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GG KP +E +GV+ +V +L +N V+
Sbjct: 115 GGMDM---KPQT-------------------LELKKGVEVLVATPGRLLDHIEAKNVVLN 152
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ DE RM + G PDLQ
Sbjct: 153 QVEYVVLDEAD--RMLDIGF------------LPDLQ----------------------- 175
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
R+ +S+ + +AT K+ AG+ L+ D I
Sbjct: 176 -----------------RILSYLPKSRTTLLFSATFSPEIKRLAGSYLQ----DPVTIEV 214
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
+ +++++ +V+ D + A+ +KER + + +F+N+ +T+ L
Sbjct: 215 ARPNETASTVEQRFYKVSDDDKRYAIRSVLKER-----DIRQAFIFSNSKLGCARLTRAL 269
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFA 501
+ G+ H D S +ER K L F K G + VCTD AARG+DI +V V D
Sbjct: 270 ERDGLRAGALHGDKSQDERLKALEAF--KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVP 327
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVD 536
+A D++HR+GRT RAG GL +L T+ + R++ D
Sbjct: 328 FNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVAD 363
>gi|432093602|gb|ELK25584.1| Putative ATP-dependent RNA helicase DDX28 [Myotis davidii]
Length = 519
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 202/486 (41%), Gaps = 108/486 (22%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
F+ ++ ++ LGL R++RAL+ RP+ VQ++++ P+L G+ ++ AAETGSGKT
Sbjct: 98 FSPEDSSFADLGLVPRVLRALQEVAPEVVRPTTVQSSTIPPILRGRHILCAAETGSGKTL 157
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
SY L + D PR LVL P+ L EQV +A L G
Sbjct: 158 SY------LLPLLQQLLGRPSLDSSTPAPRG--LVLVPSRELAEQVQAVAQPLGRSLG-- 207
Query: 197 LVRAVAVCGGQGWP------IGKP--DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
+R + GG G +P DV+V+TP AL + +R++ + + ++V D
Sbjct: 208 -LRVQELEGGHGMSRITQQLSRQPPADVLVATPGALWKAL----KRQLISLGRLTFLVLD 262
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EAD LL SF V
Sbjct: 263 EADTLLDESFLELV---------------------------------------------- 276
Query: 309 EYISDEGNF-EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKT 367
EYI N EG D ++ + Q + V AT P K
Sbjct: 277 EYILGRSNIAEGSDD--------------------LKDPFNPRAQLVLVGATFP----KG 312
Query: 368 AGAVLKQMFPDAD---WISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE--RLEFGA 422
AG +L ++ ++D I+ + LH P +K+ ++ + +V L++ +K+ R +
Sbjct: 313 AGQLLSKI-SNSDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVPELVQILKQHDRADKTG 371
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--VFVCT 480
+ +VF N+ V + IL I+ + RA +FQ KG + +CT
Sbjct: 372 SSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFKSFQ-KGSRDILLCT 430
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-NRDLVDT 537
D A+RG+D V V+ DF + D++HR GR R G G V S T + LV
Sbjct: 431 DIASRGLDSTQVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQK 490
Query: 538 IRRAAK 543
I AA+
Sbjct: 491 IELAAR 496
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 194/450 (43%), Gaps = 111/450 (24%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGLS L+RA+E G+ PS +QA ++ VLSGKDV+ AA+TG+GKT ++ +P++
Sbjct: 1 MTFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L N+ P R +L+L P L QV + + PL AV
Sbjct: 61 QRL----------NASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHT--PLKSAVVF 108
Query: 204 CG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G Q + + D++++TP LL+ + G V F E ++L+
Sbjct: 109 GGVKINSQIAQLRRGVDILIATPGRLLD------------LHGQGEVDFGELEILVL--- 153
Query: 259 QNQVIRLINM-FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317
++ R+++M F D +++ ++ P E N + + L +++ D
Sbjct: 154 -DEADRMLDMGFIHDIRRILKL------LPAERQNLLFSATFAAEIRELTKKFLQDP--- 203
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP 377
+VE + + ++ Q+++ P++ KK GA+L+++
Sbjct: 204 ---IEVEVASRNATADKVE---------------QWVY-----PVD-KKRKGALLRELVE 239
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
+ W TQV +VF+ T
Sbjct: 240 EKCW-----------------------TQV--------------------LVFSRTKHGA 256
Query: 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVI 496
+ + L AGIE H + S R + L +F+ + V V TD AARG+DI + V+
Sbjct: 257 NRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVLVATDIAARGLDIAQLPQVV 316
Query: 497 QADFATSAVDFLHRVGRTARAGQYGLVTSL 526
D A D++HR+GRT RAG G SL
Sbjct: 317 NFDLPNVAQDYVHRIGRTGRAGASGKAYSL 346
>gi|401409640|ref|XP_003884268.1| VASA RNA helicase, related [Neospora caninum Liverpool]
gi|325118686|emb|CBZ54237.1| VASA RNA helicase, related [Neospora caninum Liverpool]
Length = 769
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 199/466 (42%), Gaps = 62/466 (13%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC----TAL 150
L++ + + +P+ +Q S+ +LSG+D++ A+TGSGKT ++L P+I ++ L
Sbjct: 246 LLQNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDGPPPL 305
Query: 151 GDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
+ PP P LVL P L Q+ A G VR VAV GG
Sbjct: 306 PQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTG---VRTVAVYGGSDV 362
Query: 210 PI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQNQV 262
G D+ V+TP L++ ++ RR+ GV +A C S +
Sbjct: 363 KRQLIDLDGGCDICVATPGRLVDLLE---RRKRSAGPGVSCKSGQKASPSPECSSEREVR 419
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322
+ L+ F DE RM + G +++ S DL + Q G GDS
Sbjct: 420 LGLVQFFVLDEAD--RMLDMGFLPQIKLIVESF---DLPPSPSPQTAGYPSLG---GDSG 471
Query: 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382
RRV +Q + +AT P + + K D ++
Sbjct: 472 ----------------PGRRV------GRQTVMFSATFP----REIQMLAKDFLEDYIYL 505
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
+ + N ++++ D ++ L++ ++E E T++F T +
Sbjct: 506 AVGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRE-----TEKGLTIIFVETKRKADMIED 560
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFA 501
L H D + +ER + L F+ K + V TD AARG+DI NV+HVI D
Sbjct: 561 YLVDDDFPAISIHGDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLP 620
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAK 543
T+ D++HR+GRT RAG GL TS ESN RDL++ + A +
Sbjct: 621 TNIDDYVHRIGRTGRAGNLGLATSFVNESNKPILRDLLNLLEEAKQ 666
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 198/450 (44%), Gaps = 100/450 (22%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
+++ L RA+ + G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL+++L
Sbjct: 1 MAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMR-- 58
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
EN+++ P RA LVL P L +QV + AL A + + +R+ V GG
Sbjct: 59 --HENASASPARHPVRA--LVLLPTRELADQVAQQI-ALYAKHTK--LRSTVVFGGMDM- 110
Query: 211 IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270
KP I E +GV+ +V +L +N V+ +
Sbjct: 111 --KPQTI-------------------ELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVV 149
Query: 271 FDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEET 330
DE RM + G PDLQ
Sbjct: 150 LDEA--DRMLDIGF------------LPDLQ----------------------------- 166
Query: 331 KSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH 390
R+ +S+ + +AT K+ AG+ L+ D I +
Sbjct: 167 -----------RILSYLPKSRTTLLFSATFSPEIKRLAGSYLQ----DPVTIEVARPNET 211
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
+++++ +VT D + A+ +KER + + +F+N+ +T+ L+ G+
Sbjct: 212 ASTVEQRFYKVTDDDKRYAIRSVLKER-----DIRQAFIFSNSKLGCARLTRALERDGLR 266
Query: 451 CYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D S +ER K L F K G + VCTD AARG+DI +V V D +A D+
Sbjct: 267 AAALHGDKSQDERLKALEAF--KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDY 324
Query: 508 LHRVGRTARAGQYGLVTSLYTESN-RDLVD 536
+HR+GRT RAG GL +L T+ + R++ D
Sbjct: 325 VHRIGRTGRAGASGLAVTLVTDHDSRNVAD 354
>gi|357128412|ref|XP_003565867.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
21-like [Brachypodium distachyon]
Length = 675
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 120/461 (26%), Positives = 204/461 (44%), Gaps = 94/461 (20%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW L + L+RA+ +G+ P+ +Q A+V L +D++ A+TGSGKT ++++P++
Sbjct: 224 TWAESALGEPLLRAVAMAGYATPTPIQMAAVPLGLRRRDLIGVAQTGSGKTAAFVLPMLA 283
Query: 145 KLCTALGDS-----ENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ + +D + P+ P ++V+ P L +Q+ R L+A +
Sbjct: 284 YIMNLMTSPPPMIMSRGEADDDVHDPQGPYAVVMAPTRELAQQIERETTKLAAAACHGSI 343
Query: 199 RAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
+ V+V GGQ PI + +VIV+TP LL+ ++ RR + YVV
Sbjct: 344 KVVSVVGGQ--PIEEQAFRIRQGCEVIVATPGRLLDCLE----RRHLVLNRCSYVVL--- 394
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310
++ R+++M F+ + S ++ M S+L +P+ + EE ++ Y
Sbjct: 395 ---------DEADRMVDMG-FEPQVASVLDA--------MPTSNL-KPENEAEEQ-KNVY 434
Query: 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGA 370
+ + T +++ R+ + Y R+ + V + GK T G
Sbjct: 435 RTTH-----------MFSATMPAAVE-----RLARKYXRNPVVVTVGGS--ARGKGT-GL 475
Query: 371 VLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
V + M D+D + PRLK ++ D +
Sbjct: 476 VTQNVIMVKDSDKL---------PRLKRILADLGDDNTA--------------------I 506
Query: 429 VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGI 487
VF NT +V K L AG H S ++R +L F+ + V V TD A RGI
Sbjct: 507 VFCNTKLSVDGCAKDLDRAGFRVTTLHGGKSQDQREASLDGFRSRRFNVLVATDIAGRGI 566
Query: 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
D+P+V+HVI + + + HR+GRT RAG+ GL TS T
Sbjct: 567 DVPDVAHVINFEMPGAVDAYTHRIGRTGRAGKKGLATSFLT 607
>gi|223999467|ref|XP_002289406.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974614|gb|EED92943.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 652
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 186/439 (42%), Gaps = 84/439 (19%)
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKL----CTALGDSENSNSDKEPTPPRAPSL------- 170
+ V AA TGSGKT SYL+P+I+ L AL + S SD + A S+
Sbjct: 166 RSVAFAAATGSGKTLSYLLPIIQSLRAQELMALTTASTSPSDSTSSVSNALSMETLSRLR 225
Query: 171 --------VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP-------D 215
VL P L Q++ + ++ + + + GG + + D
Sbjct: 226 RPRRPRAVVLAPTRELARQILSVLKSVGHTCK---ISSELLVGGDDYGTQRKRLANRPVD 282
Query: 216 VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQ 275
++V+TP L+ + D F+ V++VV DE D +L FQN + RL++ + +K
Sbjct: 283 ILVATPGRLVKHRDAGDI----FLGSVRHVVIDEMDTMLEQGFQNDIGRLLHPMLYKKKV 338
Query: 276 LSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335
+S DEY + VEG + + +
Sbjct: 339 IS-----------------------------TDEYKGGKLQL-----VEGAPQVILTTAT 364
Query: 336 KKKDWRRV--RKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393
RR+ R + + + ++ + + V + D ++ LH PR
Sbjct: 365 MTPAVRRLLDRPDLPFAPKRVYGKKAEEKDEDDSPNNVKIALPRDIRVLTAPGLHRVVPR 424
Query: 394 LKEKWIEVTVDTQVDALIEAV-------KERLE-FGAETSRTMVFANTVDAVYAVTKILK 445
LK+ ++ V ++ L++ V +E+ E G T+VF NTV + A L
Sbjct: 425 LKQVFVNVGSSDKLSLLVDVVAGGERQKREQHENTGGPLPLTLVFCNTVSSCRAAEHALS 484
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQEKG-------GVFVCTDAAARGIDIPNVSHVIQA 498
+G+ CYH DL + R + L F++ G V VC+D A+RG+D+P V HV+
Sbjct: 485 ESGVPSLCYHGDLKSDVREENLRQFRKAGEGEDEGASVLVCSDIASRGLDVPQVDHVVMF 544
Query: 499 DFATSAVDFLHRVGRTARA 517
DF + +D+LHR GRTAR
Sbjct: 545 DFPLNPIDYLHRAGRTARG 563
>gi|440639893|gb|ELR09812.1| hypothetical protein GMDG_04295 [Geomyces destructans 20631-21]
Length = 825
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 132/488 (27%), Positives = 215/488 (44%), Gaps = 76/488 (15%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLS-GKDVVIAAETGS 132
S+ +D+ ++ SLG+S RL L P+ +Q A+V +++ D I A+TGS
Sbjct: 176 SNAPLSDEASSFASLGISRRLAGHLATKLDMKAPTAIQKAAVPQLIAEDSDAFIQAQTGS 235
Query: 133 GKTHSYLVPLIEKL--CTALGDSENSNSDKEPTPPRAPSL---VLCPNVVLCEQVVRMAN 187
GKT +YL+P++E++ +A +SE + DKE R L VL P LC+Q+ + +
Sbjct: 236 GKTLAYLLPIVERIMAISAAAESEGVH-DKEKQIHRNSGLFAIVLAPTRELCKQIAAVLD 294
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
L P + V GG+ K +++++TP L +++D + V
Sbjct: 295 KLL--RCAPWLVGTTVIGGESKQSEKARLRKGVNILIATPGRLADHLD---NTEVLDVST 349
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMF-----------RFDEKQL-SRMNESGVEKPLE 289
V+++V DE D L+ F+ ++ +++ R + QL SR ++
Sbjct: 350 VRWLVLDEGDRLMELGFEEEIKGIVDKIASRALINDRTGRVGKGQLPSRRVTVLCSATMK 409
Query: 290 MDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR 349
M L + L+D ++Q D E L + G+ K+D Q
Sbjct: 410 MTVQKLGEISLKDAMHIQ-----------ADPSDEELEKSKTDGTDPKEDG--FSAPAQL 456
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPD-------------ADWISGNYLHFHNPRLKE 396
++Y V A L + T AVLK+ F AD + ++ F P L
Sbjct: 457 KQEYGIVPAKLRL---VTLTAVLKRAFARRGSVMKAIVFISCADSVDFHFSLFSRPELTP 513
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRT-MVFANTVDAVYAVTKILKTAGIECYCYH 455
+ + + AV + E +T T F+N +AV + H
Sbjct: 514 PPVSGANTDEAKPAV-AVIPKNELTKDTIATGAAFSNATNAVT------------LHKLH 560
Query: 456 KDLSLEERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
L+ R TL +F E V VCTD A+RG+D+PNV V++ D S+ D +HR+GR
Sbjct: 561 GSLAQNIRTATLKHFSESKDPCVLVCTDVASRGLDLPNVDFVVEYDPPFSSDDHVHRIGR 620
Query: 514 TARAGQYG 521
TARAG+ G
Sbjct: 621 TARAGKSG 628
>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
Length = 893
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 125/507 (24%), Positives = 212/507 (41%), Gaps = 117/507 (23%)
Query: 48 LRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRP 107
L + + G F AA S++ S+ ++++GL+ L++A+ GF P
Sbjct: 41 LNIGEDDGSDDEAFIAAKQAASNRKASNIGKSVKKGGGFQAMGLNAALLKAIAQKGFKIP 100
Query: 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167
+ +Q +V +L G+DVV A TGSGKT ++++P+I+KL A
Sbjct: 101 TPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIPMIQKLKA------------HSAKVGA 148
Query: 168 PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTP 221
+++ P+ L Q +++ L G L R + + GG PD+I++TP
Sbjct: 149 RGIIMSPSRELALQTLKVVKELG--RGTDL-RTILLVGGDSLEEQFSSMTTNPDIIIATP 205
Query: 222 AALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDE----- 273
L+ ++E + V+Y+VFDEAD L F Q+ +++
Sbjct: 206 GRFLH-------LKVEMGLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASRQTLLF 258
Query: 274 -----KQLSRMNESGVEKP--LEMDNSSLTQPDLQDEENLQDEYISDEGNFEG------D 320
K L +G+++P + +D S PDL+ + G+ +G D
Sbjct: 259 SATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSA-----YFTIKSGDRDGALLHLLD 313
Query: 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDAD 380
+ ++ ET + K+D + + +R + FV +PI
Sbjct: 314 NVIKVPVGETDASKKAKEDAEKASNSKKRKRSEGFV-KDVPI------------------ 354
Query: 381 WISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAV 440
E T+ + A K R+E+ + R +A YAV
Sbjct: 355 ------------------AESTI------IFAATKHRVEYLSNLLR--------NAGYAV 382
Query: 441 TKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQAD 499
+ Y Y +L R + + +F+ + V TD AARG+D+P+++HVI D
Sbjct: 383 S----------YVYG-NLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYD 431
Query: 500 FATSAVDFLHRVGRTARAGQYGLVTSL 526
F + F+HRVGRTARAG+ G SL
Sbjct: 432 FPSQPKIFVHRVGRTARAGRKGWAYSL 458
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 112/209 (53%), Gaps = 15/209 (7%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQ 406
++S + V+AT+P KK ++ PD ++ LH P LK ++ V + +
Sbjct: 273 KKSTTIVLVSATMPDRLKK----LIDTSLPDVQYVKTQSLHKSAPGLKHNFVNVPGSEDK 328
Query: 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
+ L + V E G R MVF NTV + AV K + + YH D+S EER ++
Sbjct: 329 MKFLEDIVVPMHERG---KRVMVFCNTVSSCVAVEKTMAERNVNTVQYHGDMSSEERVES 385
Query: 467 LVNF-----QEKGGVFVCTDAAARGIDIP--NVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+ F ++ + VCTD AARG+D V +V+ DF + VD++HR GRTARAG
Sbjct: 386 MKAFCDADPEDDNLILVCTDLAARGLDFAGVKVDNVVNFDFPLNPVDYIHRSGRTARAGA 445
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G+VT+L ++ ++ L + I A +LG+P+
Sbjct: 446 KGMVTNLISKRDKVLANEIDVAVRLGRPI 474
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
LS + ALEN P+ +Q+ ++ + G +V IA+ TGSGKT +YL+P+++ A
Sbjct: 83 LSADVREALENLNLQSPTEIQSLAIPSIRDKGGNVCIASHTGSGKTLAYLLPILD----A 138
Query: 150 LGDSE-NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
L E ++ D+ R +L++ P L EQ+ + +LS V + + GG+
Sbjct: 139 LKREEIEADGDRLAKSRRPRALIVSPTRELAEQIFAVTKSLSH---YAKVSSRLILGGRP 195
Query: 209 WPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+ + K DV+V TP L+ + + K F+ K+VV DEAD L F V
Sbjct: 196 FALQKDNLEAPVDVVVGTPGRLVKHCEEKSL----FLGSCKFVVLDEADTLFEAGFGEDV 251
Query: 263 IRLI 266
RL+
Sbjct: 252 ERLL 255
>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
Length = 908
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 120/532 (22%), Positives = 216/532 (40%), Gaps = 88/532 (16%)
Query: 19 PKLLSKFNASSSCLSNSAPSSFYPLRVR--FLRLNQWKGRPFRGFAAAAAVVSDKNGSSD 76
P +N + +N +YP + + + KG F + + + N S+
Sbjct: 267 PAFGRNYNIPKTAWANRDNRRYYPEKEEEVYSNVKNEKGVNFDLYDSIPVEIKGYN--SE 324
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
DN L L + L+ ++ + + + +Q S+ +++ D++ A+TGSGKT
Sbjct: 325 NIIPIDNFDDVGLNLHEILLANIKRVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTA 384
Query: 137 SYLVPLIEKLC-------TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
YL+P+I + T +++ S+S L+L P L Q+ +
Sbjct: 385 GYLLPIINHMLLNDPPKHTFYEENQRSSSYYYNRVCLPVCLILAPTRELAVQIFYDSKKF 444
Query: 190 SADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G ++ V + GG + D+IV+TP L N+I K + ++ F+
Sbjct: 445 CFETG---IKPVVLYGGSNIKMQLSNLDKGADIIVATPGRL-NDILEKGKIKL-FL--TS 497
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
++V DEAD +L F Q IR I M+ +D DN S P+ +
Sbjct: 498 FLVLDEADRMLDMGFSPQ-IRSI-MYDYDMPG--------------NDNESRMNPNKMEY 541
Query: 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPIN 363
+ +E + +Q I +AT
Sbjct: 542 KRYTNEIVK--------------------------------------RQTIMFSATF--- 560
Query: 364 GKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAE 423
+K + K+ + ++ + N +K+ I + + + + L++ + E
Sbjct: 561 -RKEIQVLAKEYLYNYTFLLIGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSEN-----N 614
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDA 482
T++F T + + L + C H D S +ER + L F+ + V TD
Sbjct: 615 NGLTIIFVETKRKADILERFLNNQKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDV 674
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
AARG+DI N+ HVI D ++ D++HR+GRT RAG G+ TS + NR++
Sbjct: 675 AARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNDDNRNI 726
>gi|226293965|gb|EEH49385.1| ATP-dependent RNA helicase DBP7 [Paracoccidioides brasiliensis
Pb18]
Length = 776
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 209/462 (45%), Gaps = 50/462 (10%)
Query: 85 TWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 158 TFTSLGLSPTLAAHLMTKLELKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 217
Query: 143 IEKLCTAL----------GDSENSNSDKEPTP----PRAPSLVLCPNV-VLCEQVVRMAN 187
+++L G E++N+ + AP+ LC + V+ EQ++R A+
Sbjct: 218 VQRLINLSKTNGKAFGRGGGEEDNNAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 277
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 278 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLNVSN 325
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ + DE+Q S K + + S+ + ++Q
Sbjct: 326 VRWLVLDEGDRLMDLGFEEEIQGIVK--KLDERQKSNGILGLPTKRVTILCSATLKMNVQ 383
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E E T + ++ Q + Y VAA L
Sbjct: 384 ---RLGEISLKDAVHVQADPDDES-NEATAKNNANNSEFSVP---AQLKQSYSVVAAKLR 436
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + + EV + E KE L
Sbjct: 437 L---VTLAALMKRTFARKGSVMKAIVFVSCADSVDFHFEVFSRQDSENKNEGEKEGL-IV 492
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QEKGGVFVC 479
AETS T A+ V A T + Y H L R TL +F Q + V +C
Sbjct: 493 AETSFTTNLASHVTIAKATAFSNPTNPVTIYRLHGSLPQHVRTSTLTSFARQSEAAVLIC 552
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
TD AARG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 553 TDVAARGLDLPNVDFVIEYDPAFSADDHLHRIGRTARLGRDG 594
>gi|225684331|gb|EEH22615.1| ATP-dependent RNA helicase dbp7 [Paracoccidioides brasiliensis
Pb03]
Length = 776
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 209/462 (45%), Gaps = 50/462 (10%)
Query: 85 TWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 158 TFTSLGLSPTLAAHLMTKLELKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 217
Query: 143 IEKLCTAL----------GDSENSNSDKEPTP----PRAPSLVLCPNV-VLCEQVVRMAN 187
+++L G E++N+ + AP+ LC + V+ EQ++R A+
Sbjct: 218 VQRLINLSKTNGKAFGRGGGEEDNNAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 277
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 278 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLNVSN 325
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ + DE+Q S K + + S+ + ++Q
Sbjct: 326 VRWLVLDEGDRLMDLGFEEEIQGIVK--KLDERQKSNGILGLPTKRVTILCSATLKMNVQ 383
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E E T + ++ Q + Y VAA L
Sbjct: 384 ---RLGEISLKDAVHVQADPDDES-NEATAKNNANNSEFSVP---AQLKQSYSVVAAKLR 436
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + + EV + E KE L
Sbjct: 437 L---VTLAALMKRTFARKGSVMKAIVFVSCADSVDFHFEVFSRQDSENKNEGEKEGL-IV 492
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QEKGGVFVC 479
AETS T A+ V A T + Y H L R TL +F Q + V +C
Sbjct: 493 AETSFTTNLASHVTIAKATAFSNPTNPVTIYRLHGSLPQHVRTSTLTSFARQSEAAVLIC 552
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
TD AARG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 553 TDVAARGLDLPNVDFVIEYDPAFSADDHLHRIGRTARLGRDG 594
>gi|406865273|gb|EKD18315.1| ATP-dependent RNA helicase dbp7 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 926
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/457 (26%), Positives = 205/457 (44%), Gaps = 46/457 (10%)
Query: 84 VTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVP 141
T+ +LGLS RL L P+ +Q AS+ +L D I AETGSGKT +YL+P
Sbjct: 302 ATFTALGLSIRLAAHLSTKMDMKAPTAIQKASITQMLKDDSDAFIQAETGSGKTLAYLLP 361
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++E++ + D ++VL P LC+Q+ + + P + +
Sbjct: 362 IVERIMGMSTKDTQVHRDSGLF-----AVVLAPTRELCKQIATVLEKIL--RCAPWIVST 414
Query: 202 AVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V GG+ K +++++TP L +++D + V V+++V DE D L+
Sbjct: 415 TVIGGESKQSEKARLRKGVNILIATPGRLADHLD---NTEVLNVSKVRWLVLDEGDRLME 471
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ-DEENLQDEYISDE 314
F+ ++ ++ E +++ + + K + + L ++ + + L + + D
Sbjct: 472 LGFEEEIKGIVEKIGKSELVVNKRHTLDLAKLPKRRITVLCSATMKMNVQRLGEISLKDA 531
Query: 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ 374
+ + D E ++ ++G + D ++ Q + Y V A L + T A+LK+
Sbjct: 532 VHIQADPSEEEAAKDKQAGV--EADDKKFSAPAQLKQAYAVVPAKLRLV---TLTAILKR 586
Query: 375 MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV 434
F G+ + + + ++ VD LE E T V T+
Sbjct: 587 AFAR----RGSVM--------KAIVFISCADSVDFHFSLFSRPLELSPEDGETAVKPPTI 634
Query: 435 -------DAVYAVTKIL-KTAGIECYCYHKDLSLEERAKTLVNFQEKGG--VFVCTDAAA 484
D + T+I KT + + H L+ R TL F E V +CTD A+
Sbjct: 635 TRNDLTKDTIALGTEISSKTNFVVLHKLHGSLAQNIRTATLKAFTESSEPCVLICTDVAS 694
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
RG+D+PNV +VI+ D SA D LHRVGRTARAG+ G
Sbjct: 695 RGLDLPNVDYVIEYDPPFSADDHLHRVGRTARAGKDG 731
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 193/466 (41%), Gaps = 114/466 (24%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS +++A+ G+ P+ +QA ++ PVL+G+D++ A+TG+GKT ++ +P++ +
Sbjct: 4 FTDLGLSAPILKAVTAEGYETPTPIQAQAIPPVLTGRDLMGIAQTGTGKTAAFALPILNR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA-VC 204
L +E N K P L+L P L Q+ G+ L +VA V
Sbjct: 64 L------TEEGNHIKTPRG-SCRVLILSPTRELASQIAESFRVY----GKFLNLSVATVF 112
Query: 205 GG-QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG P K D++V+TP L+++
Sbjct: 113 GGVSAGPQAKALQRGVDIVVATPGRLIDH------------------------------L 142
Query: 259 QNQVIRL--INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316
QN+V+RL + +F DE +M + QP
Sbjct: 143 QNRVVRLDQVEIFVLDEAD-------------QMLDMGFIQP------------------ 171
Query: 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMF 376
RR+ K +Q +F +AT+P + AG +L
Sbjct: 172 -----------------------IRRIVKTLPAKRQNLFFSATMPREIETLAGELLH--- 205
Query: 377 PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE-RLEFGAETSRTMVFANTVD 435
D ++ + R+ ++ I V + L + + + ++ FG RT+VF T
Sbjct: 206 -DPAKVAVTPVASTAERVSQQVIFVPTGLKRALLADLLSDAQMGFG----RTLVFTRTKH 260
Query: 436 AVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSH 494
V + L+ AGI H + S +R + L+ F++ V + TD AARGID+ V+H
Sbjct: 261 GADKVVRYLEGAGIVSAAIHGNKSQSQRERALLAFRDGACKVLIATDIAARGIDVDGVTH 320
Query: 495 VIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
VI D A ++HR+GRTARAG G+ S R + I +
Sbjct: 321 VINYDLPNIAESYVHRIGRTARAGADGMAISFCDREERAYLRDIEK 366
>gi|159114098|ref|XP_001707274.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157435378|gb|EDO79600.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 756
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/464 (25%), Positives = 198/464 (42%), Gaps = 70/464 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W LGL L + L +G+ +P +Q ++ L K +VIAAETGSGKT +YL+P + K
Sbjct: 106 WVRLGLHPVLCKYLVRAGYTKPRAIQTQTIRAALHNKSLVIAAETGSGKTLAYLLPALHK 165
Query: 146 LCTALGDSENSNSDKEPTPPR---APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
T + +N+ K P + +L++ P L Q+ + + D +
Sbjct: 166 AFTLV-----TNALKRPDQAQRRALQTLIIAPTRELATQINTVMTTIFGDIQKCFRIMYT 220
Query: 203 VCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV---VFDEADML 253
+ GG + + +P ++V TP L + R F + V DE+D +
Sbjct: 221 IVGGISPQKQERFIRERPLILVGTPGRLYDI-----SRSNAFFADTSLIDRLVIDESDKM 275
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313
L +++I L + L+ G + + +++++ P L E N++ S+
Sbjct: 276 LQKGRFHELIDLCS-------SLTSTVVDGCTAKVTISSATMSLPSLLRERNIK---FSE 325
Query: 314 EGNFEGDSDVEGLT-EETKSGSIKKKDWRRVRKNYQR--------------SKQYIF--- 355
G +G T +E K GS K + R ++ ++ S++ I+
Sbjct: 326 PDEETGQPSNQGRTWKEKKWGSRKDNKFDRAIRSSKKALVLEIADNASVTESQRQIYMSW 385
Query: 356 --VAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEA 413
V + L +G K V+ + PD N + E W V + + L+
Sbjct: 386 LKVLSNLGFSGSKL---VIVDISPDC---------IVNKAVFELWNHVFDEAEKSVLMAY 433
Query: 414 VKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK 473
+ R + T++F T+D T I + GI +C H + +R K + +++
Sbjct: 434 LVIRYRYP-----TIIFVKTIDQAKNFTTIFQLLGISAWCVHASMPQRQRYKNVDRLRDR 488
Query: 474 GG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
V + TD ARG+DIP+VS VIQ S +HRVGR AR
Sbjct: 489 DDTVLITTDVCARGLDIPHVSLVIQHSAPDSTSSHIHRVGRAAR 532
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/461 (25%), Positives = 199/461 (43%), Gaps = 97/461 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +L L++ L RA+ + G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL++
Sbjct: 4 SFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L EN+++ P RA LVL P L +Q +A ++ +R+ V
Sbjct: 64 RLMR----HENTSASPARHPVRA--LVLLPTRELADQ---VAQQIAQYAKYTKLRSTVVF 114
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GG KP +E +GV+ +V +L +N V+
Sbjct: 115 GGMDM---KPQT-------------------LELKKGVEVLVATPGRLLDHIEAKNAVLN 152
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ DE RM + G PDLQ
Sbjct: 153 QVEYVVLDEA--DRMLDIGF------------LPDLQ----------------------- 175
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
R+ + +++ + +AT K+ A + L+ D I
Sbjct: 176 -----------------RILSHLPKTRTTLLFSATFSPEIKRLASSYLQ----DPVTIEV 214
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
+ +++++ V+ D + AL +K+R + + VF+N+ +T+ L
Sbjct: 215 ARPNETASTVEQRFYSVSDDDKRYALRSLLKQR-----DIRQAFVFSNSKLGCARLTRAL 269
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFAT 502
+ G+ H D S +ER K L F+ +G V VCTD AARG+DI +V V D
Sbjct: 270 ERDGLRATALHGDKSQDERLKALEAFK-RGEVDLLVCTDVAARGLDIKDVPAVFNYDVPF 328
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+A D++HR+GRT RAG G+ +L T + LV I + K
Sbjct: 329 NAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVGEIEKLIK 369
>gi|261201938|ref|XP_002628183.1| ATP-dependent RNA helicase DBP7 [Ajellomyces dermatitidis SLH14081]
gi|239590280|gb|EEQ72861.1| ATP-dependent RNA helicase DBP7 [Ajellomyces dermatitidis SLH14081]
Length = 786
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 216/493 (43%), Gaps = 64/493 (12%)
Query: 85 TWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L F P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 169 TFTSLGLSPMLAAHLMTKLEFKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 228
Query: 143 IEKL---CTALGDSENSNSDKEPTPP-----------RAPSLVLCPNV-VLCEQVVRMAN 187
+++L + G + SD AP+ LC + V+ EQ++R A+
Sbjct: 229 VQRLINLSSTNGKAFERTSDGSDNAAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 288
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 289 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLDVSN 336
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ R DE+Q S+ K + + S+ + ++Q
Sbjct: 337 VRWLVLDEGDRLMDLGFEEEIQGIVK--RLDERQKSKGISGLPAKRVTILCSATLKMNVQ 394
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E +ETK+ + V ++S Y VAA L
Sbjct: 395 ---RLGEISLKDAVHVQADPDDE--DDETKTNNTGTNSEFSVPAQLKQS--YAVVAAKLR 447
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + +VD +A + G
Sbjct: 448 L---VTLTALMKRTFARKGSVMKAIIFVS--------CADSVDFHFEAFSRQDSDNKSGG 496
Query: 422 AETSRTMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLEERAKTLVNFQEKG- 474
E T T A T TA + Y H L R TL F +G
Sbjct: 497 KELKNTEALLPTKPASIHGTVAQATAFSNPTNPVTIYKLHGSLPQHVRTSTLSAFSRQGE 556
Query: 475 -GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
V +CTD AARG+D+PNV V++ D A S+ D LHR+GRTAR G+ G N +
Sbjct: 557 AAVLICTDVAARGLDLPNVDFVVEYDPAFSSDDHLHRIGRTARLGRDGRAHIFLLPGNEE 616
Query: 534 -LVDTIRRAAKLG 545
V+ ++R + G
Sbjct: 617 KYVEILKRGYRDG 629
>gi|327354386|gb|EGE83243.1| ATP-dependent RNA helicase DBP7 [Ajellomyces dermatitidis ATCC
18188]
Length = 786
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 216/493 (43%), Gaps = 64/493 (12%)
Query: 85 TWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L F P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 169 TFTSLGLSPMLAAHLMTKLEFKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 228
Query: 143 IEKL---CTALGDSENSNSDKEPTPP-----------RAPSLVLCPNV-VLCEQVVRMAN 187
+++L + G + SD AP+ LC + V+ EQ++R A+
Sbjct: 229 VQRLINLSSTNGKAFERTSDGSDNAAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 288
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 289 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLDVSN 336
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ R DE+Q S+ K + + S+ + ++Q
Sbjct: 337 VRWLVLDEGDRLMDLGFEEEIQGIVK--RLDERQKSKGISGLPAKRVTILCSATLKMNVQ 394
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E +ETK+ + V ++S Y VAA L
Sbjct: 395 ---RLGEISLKDAVHVQADPDDE--DDETKTNNTGTNSEFSVPAQLKQS--YAVVAAKLR 447
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + +VD +A + G
Sbjct: 448 L---VTLTALMKRTFARKGSVMKAIIFVS--------CADSVDFHFEAFSRQDSDNKSGG 496
Query: 422 AETSRTMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLEERAKTLVNFQEKG- 474
E T T A T TA + Y H L R TL F +G
Sbjct: 497 KELKNTEALLPTKPASIHGTVAQATAFSNPTNPVTIYKLHGSLPQHVRTSTLSAFSRQGE 556
Query: 475 -GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
V +CTD AARG+D+PNV V++ D A S+ D LHR+GRTAR G+ G N +
Sbjct: 557 AAVLICTDVAARGLDLPNVDFVVEYDPAFSSDDHLHRIGRTARLGRDGRAHIFLLPGNEE 616
Query: 534 -LVDTIRRAAKLG 545
V+ ++R + G
Sbjct: 617 KYVEILKRGYRDG 629
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/461 (25%), Positives = 199/461 (43%), Gaps = 97/461 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +L L++ L RA+ + G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL++
Sbjct: 4 SFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L EN+++ P RA LVL P L +Q +A ++ +R+ V
Sbjct: 64 RLMR----HENTSASPARHPVRA--LVLLPTRELADQ---VAQQIAQYAKYTKLRSTVVF 114
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GG KP +E +GV+ +V +L +N V+
Sbjct: 115 GGMDM---KPQT-------------------LELKKGVEVLVATPGRLLDHIEAKNAVLN 152
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ DE RM + G PDLQ
Sbjct: 153 QVEYVVLDEA--DRMLDIGF------------LPDLQ----------------------- 175
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
R+ + +++ + +AT K+ A + L+ D I
Sbjct: 176 -----------------RILSHLPKTRTTLLFSATFSPEIKRLASSYLQ----DPVTIEV 214
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
+ +++++ V+ D + AL +K+R + + VF+N+ +T+ L
Sbjct: 215 ARPNETASTVEQRFYSVSDDDKRYALRSLLKQR-----DIRQAFVFSNSKLGCARLTRAL 269
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFAT 502
+ G+ H D S +ER K L F+ +G V VCTD AARG+DI +V V D
Sbjct: 270 ERDGLRATALHGDKSQDERLKALEAFK-RGEVDLLVCTDVAARGLDIKDVPAVFNYDVPF 328
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+A D++HR+GRT RAG G+ +L T + LV I + K
Sbjct: 329 NAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVGEIEKLIK 369
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADW-----ISGNYLHFHNPRLKEKWIE 400
N + Q+IFV ATL AV K + D D+ + +H P L+ I+
Sbjct: 206 NRRDMAQFIFVTATL-------TKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMID 258
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ ++ ALI+ ++ L+ + RT+VF NTV + A L+ ++ YH ++
Sbjct: 259 IKGRDKMSALIDIAQQHLK---DFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPS 315
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+ER+ L F+ + VCTD A+RG+D+P+V HV+ DF + +D+LHR GRTAR G
Sbjct: 316 DERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGA 375
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G VTSL + + L I +A + G P+
Sbjct: 376 KGRVTSLLAKRDLVLAAAIEQAVQSGLPL 404
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 31/217 (14%)
Query: 56 RPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASV 115
RPFRG A V+ + + + LGL D L+ A+E GF PS +Q ++
Sbjct: 5 RPFRG--PEADVIEEMD-------------FTGLGLLDDLVDAMEEFGFDSPSKIQRKAI 49
Query: 116 GPVLSGKDVVIAAETGSGKTHSYLVPLIEKL-CTALGDSENSNSDKEPTPPRAPSLVLCP 174
+L+G ++V AA TGSGKT +YL+PLI++L E S ++ PRA +VL P
Sbjct: 50 PQILNGGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRA--IVLVP 107
Query: 175 NVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI 228
L QV+ +A LS + V GG+ + G D++V TP LL +
Sbjct: 108 TRELAMQVLEVAKRLSRSCK---FSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHH 164
Query: 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
+ F+ YVV DE D +L F + +L
Sbjct: 165 EAGN----FFMSKANYVVVDEVDTMLTQGFAADIEKL 197
>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 484
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 193/459 (42%), Gaps = 95/459 (20%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +L L++ L RA+ G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL+++
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ENS++ P RA LVL P L +QV + AL A + +R+ V G
Sbjct: 65 LLK----HENSSASPARHPVRA--LVLLPTRELADQVAQQI-ALYAKYTK--LRSTVVFG 115
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
G KP I E +GV+ +V +L +N V+
Sbjct: 116 GMDM---KPQTI-------------------ELKKGVEVLVATPGRLLDHIEAKNAVLNQ 153
Query: 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325
+ DE RM + G PDLQ
Sbjct: 154 VEYVVLDEA--DRMLDIGF------------LPDLQ------------------------ 175
Query: 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN 385
R+ + + + +AT K+ AG+ L+ D I
Sbjct: 176 ----------------RILSYLPKQRTTLLFSATFSPEIKRLAGSYLQ----DPITIEVA 215
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +++++ V D + A+ + ER + +F N+ + + L+
Sbjct: 216 RPNETASTVEQRFFAVDGDDKRRAIRHVLNER-----GLKQAFIFVNSKLGCARLARSLE 270
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G++ H D S +ER K L F+ + + VCTD AARG+DI +V V D +A
Sbjct: 271 RDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNA 330
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
D++HR+GRT RAG GL +L S+ LV I + K
Sbjct: 331 EDYVHRIGRTGRAGASGLAVTLAASSDTRLVADIEKLIK 369
>gi|239611993|gb|EEQ88980.1| ATP-dependent RNA helicase DBP7 [Ajellomyces dermatitidis ER-3]
Length = 786
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 216/493 (43%), Gaps = 64/493 (12%)
Query: 85 TWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L F P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 169 TFTSLGLSPMLAAHLMTKLEFKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 228
Query: 143 IEKL---CTALGDSENSNSDKEPTPP-----------RAPSLVLCPNV-VLCEQVVRMAN 187
+++L + G + SD AP+ LC + V+ EQ++R A+
Sbjct: 229 VQRLINLSSTNGKAFERTSDGSDNAAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 288
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 289 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLDVSN 336
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ R DE+Q S+ K + + S+ + ++Q
Sbjct: 337 VRWLVLDEGDRLMDLGFEEEIQGIVK--RLDERQKSKGISGLPAKRVTILCSATLKMNVQ 394
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E +ETK+ + V ++S Y VAA L
Sbjct: 395 ---RLGEISLKDAVHVQADPDDE--DDETKTNNTGTNSEFSVPAQLKQS--YAVVAAKLR 447
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + +VD +A + G
Sbjct: 448 L---VTLTALMKRTFARKGSVMKAIIFVS--------CADSVDFHFEAFSRQDSDNKSGG 496
Query: 422 AETSRTMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLEERAKTLVNFQEKG- 474
E T T A T TA + Y H L R TL F +G
Sbjct: 497 KELKNTEALLPTKPASIHGTVAQATAFSNPTNPVTIYKLHGSLPQHVRTSTLSAFSRQGE 556
Query: 475 -GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
V +CTD AARG+D+PNV V++ D A S+ D LHR+GRTAR G+ G N +
Sbjct: 557 AAVLICTDVAARGLDLPNVDFVVEYDPAFSSDDHLHRIGRTARLGRDGRAHIFLLPGNEE 616
Query: 534 -LVDTIRRAAKLG 545
V+ ++R + G
Sbjct: 617 KYVEILKRGYRDG 629
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 195/457 (42%), Gaps = 100/457 (21%)
Query: 96 IRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155
+ AL++ G VQA + ++ G +V++ A TGSGKT ++ +P++EKL +
Sbjct: 62 VEALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKL------ART 115
Query: 156 SNSDKEPTPPRAPSLVL-CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP 214
+ S+++P R P+ V+ CP L QV + +S A+ GG + +
Sbjct: 116 TKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKG-----FVVTALYGGVAYSTQER 170
Query: 215 ------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+V+TP + ++ +R + F R VK V DEAD +L F++ + L+
Sbjct: 171 ALYSGVDVVVATPGRAKDFLE---KRTLCFDR-VKVVCLDEADHMLDIGFKDDIELLL-- 224
Query: 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328
+K E + S+ EGN T
Sbjct: 225 ----------------QKVAEQNGST-------------------EGN---------PTH 240
Query: 329 ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388
+T S +W R+K++I M + N +
Sbjct: 241 QTLLFSATVPEWVHTCSFIPRNKEFI-------------------DMVGQGTMRAANTIK 281
Query: 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
F+ R K + EV+ L + VK + RT+VF NT + ++ +
Sbjct: 282 FY--RRKCHFSEVSC-----MLADLVKV---YSGRHGRTLVFTNTKKECHDLS--INNTK 329
Query: 449 IECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
++ C H D+ E+R T+ +F++ K V + TD AARG+D+P V VIQ T F
Sbjct: 330 LDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAF 389
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
+HR GRT RAG+ G+ L+ + +V+ I R AK+
Sbjct: 390 IHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKI 426
>gi|308161422|gb|EFO63871.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 756
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 200/465 (43%), Gaps = 72/465 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W LGL L + L +G+ +P +Q ++ L GK +VIAAETGSGKT +YL+P + K
Sbjct: 106 WFRLGLHPVLCKYLVRAGYTKPRAIQTQTIRAALHGKSLVIAAETGSGKTLAYLLPALHK 165
Query: 146 LCTALGDSENSNSDKEPTPPR---APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
T + +N+ K P + +L++ P L Q+ + + D +
Sbjct: 166 AFTLV-----TNALKRPDQAQRRALQTLIIAPTRELATQINTVMTTIFGDIQKCFRIMHT 220
Query: 203 VCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG + + +P ++V TP L + K + +V DE+D +L
Sbjct: 221 IVGGISPQKQERFIRERPLILVGTPGRLYDI--SKSNAFFADTSLIDRLVIDESDKMLQK 278
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ----DEYIS 312
+++I L + L+ G + + +++++ P + E N++ DE +
Sbjct: 279 GRFHELIDLCS-------SLTSTVIDGCTARVTISSATMSLPSMLRERNIKFLEPDEEVG 331
Query: 313 DEGNFEGDSDVEGLT-EETKSGSIKKKDWRRVRKNYQR--------------SKQYIF-- 355
N +G T +E K GS K + R ++ ++ S++ I+
Sbjct: 332 HHSN-------QGRTWKEKKWGSRKDNKFDRAIRSSKKALVLEIADNASVTESQRQIYMS 384
Query: 356 ---VAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIE 412
V + L +G K V+ + PD N + E W V + + L+
Sbjct: 385 WLKVLSNLGFSGSKL---VIVDISPDC---------IVNKAVFELWNHVFDEAEKSVLMA 432
Query: 413 AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE 472
+ R + T++F T+D I + GI +C H ++ +R K + ++
Sbjct: 433 YLVMRYRYP-----TIIFVKTIDQAKNFATIFQLLGIPAWCVHASMAQRQRYKNVDRLRD 487
Query: 473 KGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ V + TD ARG+DIP+VS VIQ S +HRVGR AR
Sbjct: 488 RDDTVLITTDVCARGLDIPHVSLVIQHSAPDSTSSHIHRVGRAAR 532
>gi|170575198|ref|XP_001893141.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158601006|gb|EDP38026.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 830
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 185/434 (42%), Gaps = 89/434 (20%)
Query: 86 WKSLGLSDRLIR-ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
W++ G D L+R +E S + P +QAA + + +G D+V AETGSGKT ++++P+I
Sbjct: 424 WRNAGFGDLLLRNVVEKSFYSAPRRIQAAVIPLIQNGWDIVGHAETGSGKTAAFILPIIN 483
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + D E ++S P +L+L P L Q+ A + G + +A
Sbjct: 484 YI---MNDGEKNDSRCAPI-----ALILAPTRELVGQLYNQARKFANGTGVTVAKAY--- 532
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GQ L NI ME RG ++F
Sbjct: 533 -GQ--------------YKLFENI-------MELERGCN-ILF----------------- 552
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ R+ + + + +++ N S D D QD + +D N
Sbjct: 553 ---------ATMGRLKDFVINRKVKLHNISFFVLDEADRMLSQDSFQTDIINL------- 596
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
+ + D+ V+ +Q + +AT+ K+ A VLK+ + ++S
Sbjct: 597 ----------VHRPDFPSVK-----DRQTLLFSATITSEVKELAAKVLKE---NHAFVSN 638
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
NP +++ +IEVT + + D LI+ ++E E + +RT+VF + L
Sbjct: 639 GKTISANPLVEQNFIEVTSENKFDKLIQLLEEDREHNGDVARTLVFVQRKQMADVIALNL 698
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFAT 502
I+ D ++R + L +F+ KG V V TD ARGID+ ++ HVI D +
Sbjct: 699 IQKNIQSSSISGDRMQKQREEALSDFR-KGNIKVLVATDVCARGIDVKDLQHVINYDMPS 757
Query: 503 SAVDFLHRVGRTAR 516
V ++HR+GRT R
Sbjct: 758 DRVTYVHRIGRTGR 771
>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 484
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 193/459 (42%), Gaps = 95/459 (20%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +L L++ L RA+ G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL+++
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ENS++ P RA LVL P L +QV + AL A + +R+ V G
Sbjct: 65 LLK----HENSSASPARHPVRA--LVLLPTRELADQVAQQI-ALYAKYTK--LRSTVVFG 115
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
G KP I E +GV+ +V +L +N V+
Sbjct: 116 GMDM---KPQTI-------------------ELKKGVEVLVATPGRLLDHIEAKNAVLNQ 153
Query: 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325
+ DE RM + G PDLQ
Sbjct: 154 VEYVVLDEA--DRMLDIGF------------LPDLQ------------------------ 175
Query: 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN 385
R+ + + + +AT K+ AG+ L+ D I
Sbjct: 176 ----------------RILSYLPKQRTTLLFSATFSPEIKRLAGSYLQ----DPITIEVA 215
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +++++ V D + A+ + ER + +F N+ + + L+
Sbjct: 216 RPNETASTVEQRFFAVDGDDKRRAIRHVLNER-----GLKQAFIFVNSKLGCARLARSLE 270
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G++ H D S +ER K L F+ + + VCTD AARG+DI +V V D +A
Sbjct: 271 RDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNA 330
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
D++HR+GRT RAG GL +L S+ LV I + K
Sbjct: 331 EDYVHRIGRTGRAGASGLAVTLAASSDTRLVADIEKLIK 369
>gi|326474086|gb|EGD98095.1| ATP-dependent RNA helicase DBP7 [Trichophyton tonsurans CBS 112818]
Length = 778
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 206/464 (44%), Gaps = 43/464 (9%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L P+ +Q +S+ +L D I AETGSGKT +YL+PL
Sbjct: 151 TFTSLGLSPELAAHLLTKLKLKNPTAIQKSSITQLLKENCDGFIQAETGSGKTLAYLLPL 210
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS----LVLCPNVVLCEQVVRMANALSADNGEPLV 198
+++L G +PTP S ++L P LC+Q+ + ++L N +
Sbjct: 211 VQRLMNLSGRKSTEEGQGQPTPIHRDSGLFAIILAPTRELCKQISVVLDSLL--NCAHWL 268
Query: 199 RAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
A V GG+ K +++V+TP L +++D + + VR ++V DE D
Sbjct: 269 VAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLDNTKVLDVGLVR---WLVLDEGDR 325
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
L+ F+ ++ +I + S++ E+ + L + S+ + ++Q L + +
Sbjct: 326 LMELGFEEEIQNIIKKLDSKRRPTSKI-ENLPTRRLTVLCSATLKMNVQ---RLGEMSLK 381
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
D + + D E +++G +K Q + + VA+ L + T A+L
Sbjct: 382 DAVHIQADPADEIEDASSQAGDAQKS--LEFSAPAQLKQSFAIVASKLRL---VTLTALL 436
Query: 373 KQMF-------------PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLE 419
K F AD + ++ F R +K E + + E KE +
Sbjct: 437 KSTFLRKGTVMKAIVFVSCADSVDYHFEVF--TRKSDKSTEGAAKGEKEREKEEEKEEKD 494
Query: 420 FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QEKGGVF 477
AE + T + + T + + H L R TL F Q+ V
Sbjct: 495 LSAEAASTTNSSTQGTVAESPTLSNPNNSVILHKLHGSLPQHVRTATLSAFAKQKDTSVL 554
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
+CTD A+RG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 555 ICTDVASRGLDLPNVDFVIEYDPAFSADDHLHRIGRTARLGRDG 598
>gi|253741415|gb|EES98285.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 767
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/465 (24%), Positives = 200/465 (43%), Gaps = 72/465 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W LGL L + L +G+ +P +Q ++ L K +VIAAETGSGKT +YL+P + K
Sbjct: 106 WVRLGLHPVLCKYLVRAGYTKPRAIQVQTIRAALHDKSLVIAAETGSGKTLAYLLPALHK 165
Query: 146 LCTALGDSENSNSDKEPTPPR---APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
T + +N+ K P + +L++ P L Q+ + + D +
Sbjct: 166 AFTLV-----TNALKRPEQAQRRALQTLIIAPTRELATQINTVMTTIFGDIQKCFRIMYT 220
Query: 203 VCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG + + +P ++V TP L + K + +V DE+D +L
Sbjct: 221 IVGGISPQKQERFIRERPLILVGTPGRLYDI--SKSNAFFADTSLIDRLVIDESDKMLQK 278
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ----DEYIS 312
+++I L + L+ G + + +++++ P + E N++ DE +
Sbjct: 279 GRFHELIDLCSA-------LTSAVTDGCTAKVTISSATMSLPSMLRERNIKFSEPDEETA 331
Query: 313 DEGNFEGDSDVEGLT-EETKSGSIKKKDWRRVRKNYQR--------------SKQYIF-- 355
N +G T +E K G K + + ++ ++ S++ I+
Sbjct: 332 QPSN-------QGRTWKEKKRGRRKDNKFDKAIRSAKKDLVLEIADNAAVTESQRQIYMS 384
Query: 356 ---VAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIE 412
V + L +G K V+ + PD N + E W V D++ + L+
Sbjct: 385 WLKVLSNLGFSGSKL---VIVDISPDC---------IVNKAVFELWNHVFDDSEKNVLMA 432
Query: 413 AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE 472
+ R + T++F T+D T I + GI +C H + +R K + ++
Sbjct: 433 YLVIRYRYP-----TIIFVKTIDQAKNFTNIFQLLGIPAWCVHASMPQRQRYKNVDRLRD 487
Query: 473 KGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ V + TD ARG+DIP+VS VIQ S +HRVGR AR
Sbjct: 488 RSDTVLITTDVCARGLDIPHVSLVIQHSAPDSTSSHIHRVGRAAR 532
>gi|326478284|gb|EGE02294.1| ATP-dependent RNA helicase DBP7 [Trichophyton equinum CBS 127.97]
Length = 778
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 199/463 (42%), Gaps = 41/463 (8%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L L P+ +Q +S+ +L D I AETGSGKT +YL+PL
Sbjct: 151 TFTSLGLSPELAAHLLTKLKLKNPTAIQKSSITQLLKENCDGFIQAETGSGKTLAYLLPL 210
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS----LVLCPNVVLCEQVVRMANALSADNGEPLV 198
+++L G +PTP S ++L P LC+Q+ + ++L N +
Sbjct: 211 VQRLMNLSGRKSTEEGQGQPTPIHRDSGLFAIILAPTRELCKQISVVLDSLL--NCAHWL 268
Query: 199 RAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
A V GG+ K +++V+TP L +++D + + VR ++V DE D
Sbjct: 269 VAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLDNTKVLDVGLVR---WLVLDEGDR 325
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEK-------PLEMDNSSLTQPDLQDEEN 305
L+ F+ ++ +I + S+ + L+M+ L + L+D +
Sbjct: 326 LMELGFEEEIQNIIKKLDSKRRPTSKFENLPTRRLTVLCSATLKMNVQRLGEMSLKDAVH 385
Query: 306 LQ----DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
+Q DE I D + GD+ + E + + K+ + V + + +T
Sbjct: 386 IQADPADE-IEDASSQAGDAQK---SLEFSAPAQLKQSFAIVASKLRLVTLTALLKSTFL 441
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHN-PRLKEKWIEVTVDTQVDALIEAVKERLEF 420
G V D+ HF R +K E + + E KE +
Sbjct: 442 RKGTVVKAIVFVSCADSVDY------HFEVFTRKSDKSTEGAAKGEKEREKEEEKEEKDL 495
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QEKGGVFV 478
AE + T + + T + + H L R TL F Q+ V +
Sbjct: 496 SAEAASTTNSSTQGTVAESPTLSNPNNSVILHKLHGSLPQHVRTATLSAFAKQKDTSVLI 555
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
CTD A+RG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 556 CTDVASRGLDLPNVDFVIEYDPAFSADDHLHRIGRTARLGRDG 598
>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 521
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 201/463 (43%), Gaps = 103/463 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGLS ++A+ ++G+ + +QA ++ L+G+DV+ A+TG+GKT ++ +PLIE+
Sbjct: 4 FSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIER 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA--V 203
L + PRA LVL P L +QV + V +
Sbjct: 64 LSKGRARARM---------PRA--LVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVS 112
Query: 204 CGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G Q + K DV+++TP LL+ + R +M + GV+ +V DEAD +L F +
Sbjct: 113 MGDQVAALNKGVDVLIATPGRLLDLFE---RGKM-MLNGVELMVVDEADRMLDMGFIPDI 168
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322
R+ F+ + + S P + + LTQ L+D ++ +
Sbjct: 169 ERI---FKLTPPKRQTLFFSATMPP---EITRLTQAFLKDPTRIE-------------AS 209
Query: 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382
+T ET + QY+ +P + K A L+++ AD
Sbjct: 210 RPAMTAETIT-------------------QYLV---RIPSSDPKAKRAALRELMARADVR 247
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
+G + F N + ++VD + +++K+
Sbjct: 248 NG--IVFCNRK-----------SEVDVVAKSLKQH------------------------- 269
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFA 501
G + H DL R KTL +F+ + V +D AARG+DIP+VSHV D +
Sbjct: 270 -----GFDAAPIHGDLDQSLRTKTLADFRSGALKILVASDVAARGLDIPDVSHVFNYDVS 324
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
A D++HR+GRT RAG+ G + T ++ +D + + K+
Sbjct: 325 HHADDYVHRIGRTGRAGKLGQAFMIVTPADDKSLDKVMKLIKM 367
>gi|159110427|ref|XP_001705473.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157433558|gb|EDO77799.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 900
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 195/453 (43%), Gaps = 98/453 (21%)
Query: 86 WKSLG-LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG LS +++A+ + G+ + +Q A++ ++ G D + ++TGSGKT +Y +PL+
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYSTLTSIQKAAIPVIIDGGDACVVSKTGSGKTAAYSIPLVN 94
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + T R LV+ P LC Q+ + LS +P +R +
Sbjct: 95 LL----------GCHRATTGIRG--LVIAPTRELCVQIGGVIRKLSRFT-DPELRVCLLV 141
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+ PD+IV TP +L+ + D+ +F
Sbjct: 142 GGEALEKQFTALTANPDIIVCTPGRILH-------------------IHDQV-----STF 177
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
++Q ++ I FDE D E N Q +
Sbjct: 178 KSQ-LKSIEYVCFDES------------------------DRMFEMNFQQQV-------- 204
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ---M 375
+ ++ L E G I + R YQ I V+AT+P N + A L+ +
Sbjct: 205 -NEILDLLPAERTGGHITETRSARDFLGYQ----IIMVSATMPNNLAVFSKARLQNPTII 259
Query: 376 FPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVD 435
+ D + N L ++I ++ + AL+ +E + +T R +VF T
Sbjct: 260 AAENDMVLPN-------ELTNQFIYCPINYREAALLYICRELV---PKTWRLLVFVATKH 309
Query: 436 AVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVS 493
+T IL+ + C + L ++R L F +KG + + TD AARGIDIPN++
Sbjct: 310 HCEYLTSILQANNLRATCIYGSLDQKQRTLALSEF-DKGRYSILISTDVAARGIDIPNLN 368
Query: 494 HVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
VI +F +S +++HRVGR+ARAG YGL S+
Sbjct: 369 CVINYNFPSSGKNYVHRVGRSARAGSYGLCVSI 401
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 191/457 (41%), Gaps = 100/457 (21%)
Query: 96 IRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155
+ AL++ G VQA + ++ G +V++ A TGSGKT ++ +P++EKL +
Sbjct: 62 VEALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKL------ARM 115
Query: 156 SNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP 214
+ S+++P R P+ ++ CP L QV + +S A+ GG + +
Sbjct: 116 TKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISKG-----FVVTALYGGVAYSTQER 170
Query: 215 ------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
DV+V+TP + ++ +R + F R VK V DEAD +L F++
Sbjct: 171 ALYSGVDVVVATPGRAKDFLE---KRTLCFDR-VKVVCLDEADHMLDIGFKD-------- 218
Query: 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328
D E L + G+ EG+ T
Sbjct: 219 ---------------------------------DIELLLQKVAEQNGSTEGNP-----TH 240
Query: 329 ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388
+T S +W R K++I M + N +
Sbjct: 241 QTLLFSATVPEWVHTCSFIPRKKEFI-------------------DMVGQGTMRAANTIK 281
Query: 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
F+ R K + EV+ L + VK + RT+VF NT + ++ +
Sbjct: 282 FY--RRKCHFSEVSC-----MLADLVKV---YSGRHGRTLVFTNTKKECHDLS--INNTK 329
Query: 449 IECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
++ C H D+ E+R T+ +F++ K V + TD AARG+D+P V VIQ T F
Sbjct: 330 LDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAF 389
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
+HR GRT RAG+ G+ L+ + +V+ I R AK+
Sbjct: 390 IHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKI 426
>gi|395797811|ref|ZP_10477099.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|421141916|ref|ZP_15601895.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
gi|395338179|gb|EJF70032.1| putative ATP-dependent RNA helicase [Pseudomonas sp. Ag1]
gi|404506936|gb|EKA20927.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens
BBc6R8]
Length = 445
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 197/456 (43%), Gaps = 98/456 (21%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ +LGL + L+RALE G+ P+ VQA ++ VL+G+D++ AA+TG+GKT + VPL+
Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L T G ++NS + +L+LCP L EQ V + A A N PL AV
Sbjct: 61 Q-LLTMEGPKVSANSVR--------ALILCPTRELAEQ-VHASVAEYAQN-VPLT-TYAV 108
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG +I+P+ M+ +GV +V
Sbjct: 109 YGGV-------------------SINPQM---MKLRKGVDVLVATPG------------- 133
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
RLI++FR + +L+++ + DE + D
Sbjct: 134 RLIDLFRQNALKLNQLQT----------------------------LVLDEADRMLDL-- 163
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
G +EE + + + + +Q + +AT ++ AG QM D +
Sbjct: 164 -GFSEELAN----------IYRMLPKKRQTLLFSATFSDEIRQLAG----QMLNDPLTVE 208
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
+ + +K+ + V + + + +++ + +VFA T + V A+ +
Sbjct: 209 VSPRNVAANTVKQWVVPVDKKRKAELFVHLMRK-----GRWKQVLVFAKTRNGVDALVEK 263
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFAT 502
L+ GI H D R + L F+ + V TD AARG+DI ++ V+ D
Sbjct: 264 LQGLGINADGIHGDKPQATRQRALDRFKSSDVQILVATDVAARGLDIEDLPLVVNFDLPI 323
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
A D++HR+GRT RAG G SL +++ I
Sbjct: 324 VAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|403334343|gb|EJY66329.1| ATP-dependent RNA helicase [Oxytricha trifallax]
Length = 557
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 18/207 (8%)
Query: 349 RSKQYIFVAATLP---INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT--- 402
R +Q+IF AT+P +NG T L FP+ I LH + ++ +WI++
Sbjct: 323 RRRQFIFTGATIPRTIMNGHDTLNT-LYDWFPNIKHIKTETLHRVSQLIEYEWIDLERSH 381
Query: 403 ---------VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
D +++ L++ VK ++ S M+FA + + V + L+ A I+
Sbjct: 382 AIRASQVYCEDHEINILVDQVKRSIDVLRNRS-IMIFAESKKTIDKVCEALRKAEIKNLP 440
Query: 454 YHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
Y+ D+ ++ R TL +F + V VC++ A+RG+D NV HVIQ +FA +A+D++HRVG
Sbjct: 441 YYHDIGVQGRQTTLHHFFNRELPVLVCSNMASRGLDTINVDHVIQFEFAKNAIDYIHRVG 500
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIR 539
RT R GQ G VT+ + + +L IR
Sbjct: 501 RTGRLGQRGYVTNFTRKGDNELEQQIR 527
>gi|393245470|gb|EJD52980.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 736
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 123/482 (25%), Positives = 199/482 (41%), Gaps = 95/482 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W L +L AL + F P+ +Q+ ++ + G+D++ AETGSGKT +Y +P++
Sbjct: 137 WAPFNLHAQLAAALHHKKFASPTSIQSQAIPKAVEGRDIIGVAETGSGKTLAYGLPILHH 196
Query: 146 LCTALGDSENSNSDKEPTPPRAP------SLVLCPNVVLCEQVVRMANALSAD------- 192
L T P PP++ +LVL P L QV A D
Sbjct: 197 LLTT------------PRPPKSKGRRPVRALVLAPTRELALQVAAHLKACLVDPIKKEED 244
Query: 193 --------NGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF 238
P V A+ GG + DV+V+TP L + + ++
Sbjct: 245 TDDKPKGPAKPPAVSVAAIVGGMSAQKQRRVLERGVDVLVATPGRLWDILSEDDALALQI 304
Query: 239 VRGVKYVVFDEAD-MLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQ 297
R +K++V DEAD M+ G F L N+ + + V+ P E + +L
Sbjct: 305 KR-LKFLVLDEADRMIQAGHFAE----LDNILKLTVR---------VDMPEEDAHDALE- 349
Query: 298 PDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRR---VRKNYQRSK 351
+F+ S EG E+ ++ + KD +R RK +
Sbjct: 350 ------------------DFKKASSAEGKNEDVQTFVFSATLSKDLQRNLKKRKYLGKGN 391
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
+ + L + + + + P+ ++G L+E IE V T DA +
Sbjct: 392 KTSTLDDLLLRLDFRDSDPEIIDLSPEGGVVAG---------LQESKIECLV-TDKDAYL 441
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
R RT+VF +++D + + +L+ ++ + H +L ++R KTL F+
Sbjct: 442 YYFLLRY-----PGRTLVFLSSIDGLRRLAPLLELLQLKSFVLHSELQQKQRLKTLDRFK 496
Query: 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
E V + TD AARG+D+P+V HVI SA ++HR GRTARA G L
Sbjct: 497 AEARCVLLATDVAARGLDVPHVDHVIHYQLPRSADTYVHRNGRTARARAAGFALLLVAPD 556
Query: 531 NR 532
R
Sbjct: 557 ER 558
>gi|154317701|ref|XP_001558170.1| hypothetical protein BC1G_03202 [Botryotinia fuckeliana B05.10]
gi|160380626|sp|A6RSH5.1|DBP7_BOTFB RecName: Full=ATP-dependent RNA helicase dbp7
gi|347837523|emb|CCD52095.1| hypothetical protein [Botryotinia fuckeliana]
Length = 877
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 133/483 (27%), Positives = 209/483 (43%), Gaps = 83/483 (17%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSG-KDVVIAAETGS 132
S+ ++ T+ +LGLS RL L P+ +Q ASV ++S D I AETGS
Sbjct: 246 SNAPLTEEMATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVQQLVSDDSDAFIQAETGS 305
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD 192
GKT +YL+P++E++ L SEN + A ++L P LC+Q+ + +
Sbjct: 306 GKTLAYLLPIVERI---LALSENGVQIHRDSGLFA--IILSPTRELCKQIAAVLEKVL-- 358
Query: 193 NGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
P + V GG+ K +++V+TP L +++D + V V+++V
Sbjct: 359 RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLD---NTEVLNVATVRWLV 415
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKP-----------LEMDNSSL 295
DE D L+ F+ ++ ++ + + +++ N P ++M+ L
Sbjct: 416 LDEGDRLMELGFEEEIKGIVE--KIGRRSVAKANSDMGSLPKRRVTILCSATMKMNVQRL 473
Query: 296 TQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIF 355
+ L+D ++Q +D E G+ + K+ S Q + Y
Sbjct: 474 GEISLKDAVHIQ----ADPSEQEKQDKENGVEAQDKAFSAP----------TQLKQSYAI 519
Query: 356 VAATLPINGKKTAGAVLKQMFPDADWI--------SGNYLHFHNP---RLKEKWIEVTVD 404
V A L + T A+LK+ F + + + FH R E EV +
Sbjct: 520 VPAKLRL---VTLTALLKRAFARKGSVMKAIVFISCADSVDFHFSLFSRTPEASAEVVDE 576
Query: 405 TQVD--AL--IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+VD AL E VKE + G S N + V + H L+
Sbjct: 577 EKVDLPALPKSELVKETIAHGTTIS------NNSNPVI------------LHKLHGSLAQ 618
Query: 461 EERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R TL F E V +CTD A+RG+D+PNV VI+ D SA D LHRVGRTARAG
Sbjct: 619 NIRTATLKAFSESADPCVMICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAG 678
Query: 519 QYG 521
+ G
Sbjct: 679 REG 681
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/477 (26%), Positives = 201/477 (42%), Gaps = 101/477 (21%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
K SDT T+ GL+ +++A++ SG+ P+ +QA ++ VL+G+DV+ AA+T
Sbjct: 20 KATMSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQT 79
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANA 188
G+GKT S+ +P+I++L L + S S P R P +L+L P L +QV A
Sbjct: 80 GTGKTASFSLPIIQRL---LPQASTSAS-----PARHPVRALILTPTRELADQVAANVQA 131
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
+ +R+ V GG +++P+ + RGV+ ++
Sbjct: 132 YAKHTA---LRSAVVFGGV-------------------DMNPQSE---QLRRGVEILIAT 166
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+L + + + M DE RM + G PDLQ NL
Sbjct: 167 PGRLLDHVQQKTANLGQVQMLVLDEA--DRMLDMGF------------LPDLQRILNL-- 210
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368
+ E L T SG IKK + Y R+ Q I VA TA
Sbjct: 211 --LPKERQTL-------LFSATFSGEIKK-----LAATYLRNPQTIEVA-----RSNSTA 251
Query: 369 GAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428
V + ++ EV + A+++ ++ER + +
Sbjct: 252 TNVTQVVY-----------------------EVAEGDKTGAVVKLIRER-----GLKQVI 283
Query: 429 VFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARG 486
VF N+ + + L+ G+ H D S ER + L F+ +G V V TD AARG
Sbjct: 284 VFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFK-RGEVEALVATDVAARG 342
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+DI + VI D +A D++HR+GRT RAG G SL + + R + I + K
Sbjct: 343 LDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIK 399
>gi|156031235|ref|XP_001584942.1| hypothetical protein SS1G_14039 [Sclerotinia sclerotiorum 1980]
gi|160380627|sp|A7F8V8.1|DBP7_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp7
gi|154699441|gb|EDN99179.1| hypothetical protein SS1G_14039 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 877
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 209/483 (43%), Gaps = 83/483 (17%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSG-KDVVIAAETGS 132
S+ ++ T+ +LGLS RL L P+ +Q ASV ++S D I AETGS
Sbjct: 246 SNAPLTEEMATFTNLGLSRRLAAHLSTKLDMKAPTAIQKASVTQLISDDSDAFIQAETGS 305
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD 192
GKT +YL+P++E++ AL D N + +++L P LC+Q+ + +
Sbjct: 306 GKTLAYLLPIVERIL-ALSD----NGIQIHRDSGLFAIILSPTRELCKQIAAVLEKVL-- 358
Query: 193 NGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
P + V GG+ K +++V+TP L +++D + V V+++V
Sbjct: 359 RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLD---NTEVLNVATVRWLV 415
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKP-----------LEMDNSSL 295
DE D L+ F+ ++ ++ + + ++ + + P ++M+ L
Sbjct: 416 LDEGDRLMELGFEEEIKGIVE--KIGRRSVASGSSEMMSLPKRRVTILCSATMKMNVQRL 473
Query: 296 TQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIF 355
+ L+D ++Q +D E G+ + K+ S Q + Y
Sbjct: 474 GEISLKDAVHIQ----ADPSEQEKQDKANGIEADDKAFSAP----------TQLKQSYAI 519
Query: 356 VAATLPINGKKTAGAVLKQMFPDADWI--------SGNYLHFHNP---RLKEKWIEVTVD 404
V A L + T A+LK+ F + + + FH R EK E + +
Sbjct: 520 VPAKLRL---VTLTALLKRAFARKGSVMKAIVFMSCADSVDFHFSLFSRSAEKSAEASEE 576
Query: 405 TQVDALI----EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+VD E +KE + GA +N + V + H L+
Sbjct: 577 GKVDPPTLPKSELIKETITHGA------TISNNSNPVI------------LHKLHGSLAQ 618
Query: 461 EERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R TL + E V +CTD A+RG+D+PNV VI+ D SA D LHRVGRTARAG
Sbjct: 619 NIRTATLKAYSESADPCVLICTDVASRGLDLPNVDFVIEYDPPFSAEDHLHRVGRTARAG 678
Query: 519 QYG 521
+ G
Sbjct: 679 REG 681
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 190/444 (42%), Gaps = 99/444 (22%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ + +QA ++ VL+GKDV+ AA+TG+GKT ++ +PL+++L EN+++
Sbjct: 2 GYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMR----HENASASPAR 57
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPA 222
P RA LVL P L +QV + AL A + + +R+ V GG KP I
Sbjct: 58 HPVRA--LVLLPTRELADQVAQQI-ALYAKHTK--LRSTVVFGGMDM---KPQTI----- 104
Query: 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNES 282
E +GV+ +V +L +N V+ + DE RM +
Sbjct: 105 --------------ELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEA--DRMLDI 148
Query: 283 GVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRR 342
G PDLQ R
Sbjct: 149 GF------------LPDLQ----------------------------------------R 156
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+ +S+ + +AT K+ AG+ L+ D I + +++++ +VT
Sbjct: 157 ILSYLPKSRTTLLFSATFSPEIKRLAGSYLQ----DPVTIEVARPNETASTVEQRFYKVT 212
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
D + A+ +KER + + +F+N+ +T+ L+ G+ H D S +E
Sbjct: 213 DDDKRYAIRSVLKER-----DIRQAFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDE 267
Query: 463 RAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
R K L F K G + VCTD AARG+DI +V V D +A D++HR+GRT RAG
Sbjct: 268 RLKALEAF--KAGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGA 325
Query: 520 YGLVTSLYTESNRDLVDTIRRAAK 543
GL +L T+ + V I + K
Sbjct: 326 SGLAVTLVTDHDSRNVADIEKLTK 349
>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 734
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 121/465 (26%), Positives = 192/465 (41%), Gaps = 86/465 (18%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT----AL 150
L++ + + +P+ +Q S+ +LSG+D++ A+TGSGKT ++L P+I ++ L
Sbjct: 241 LLQNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDGPPPL 300
Query: 151 GDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
+ PP P LVL P L Q+ A G VR VAV GG
Sbjct: 301 PQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTG---VRTVAVYGGSDV 357
Query: 210 PI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
G D+ V+TP L++ ++ RR++ +
Sbjct: 358 KRQLIDLDGGCDICVATPGRLVDLLE---RRKVR-------------------------L 389
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
L+ F DE RM + G +++ S DL Q G GDS
Sbjct: 390 GLVQFFVLDEA--DRMLDMGFLPQIKLIVESF---DLPPSPTPQTAGYPSLG---GDSGA 441
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
RRV +Q + +AT P + + K D +++
Sbjct: 442 ----------------GRRV------GRQTVMFSATFP----REIQMLAKDFLEDYIYLA 475
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
+ N ++++ D ++ L++ ++E E T++F T +
Sbjct: 476 VGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRE-----TEKGLTIIFVETKRKADMIEDY 530
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
L H D + +ER + L F+ K + V TD AARG+DI NV+HVI D T
Sbjct: 531 LVDDDFPAVSIHGDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPT 590
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAK 543
+ D++HR+GRT RAG GL TS ESN RDL++ + A +
Sbjct: 591 NIDDYVHRIGRTGRAGNLGLATSFVNESNKPILRDLLNLLEEAKQ 635
>gi|223999867|ref|XP_002289606.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
pseudonana CCMP1335]
gi|220974814|gb|EED93143.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
pseudonana CCMP1335]
Length = 501
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 198/459 (43%), Gaps = 86/459 (18%)
Query: 94 RLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
+L+ A+EN+ + +PS +Q ++ + +D++ AETGSGKT ++ +PL + +
Sbjct: 96 KLLDAIENTLKYTKPSPIQRQAIPIGMQRRDLIGIAETGSGKTAAFGIPLCHHILSFPQS 155
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQV-VRMANALSADNGEPLVRAVAVCGGQGWPI 211
++ +++ P +LV+ P L Q+ + + LS+ V ++AV GGQ
Sbjct: 156 ILDTVAEEGPL-----ALVMAPTRELALQIDIEIRKLLSSQQN---VVSLAVVGGQSITE 207
Query: 212 GKP------DVIVSTPAALLNNIDPKRRRRMEFV--RGVKYVVFDEADMLLCGSFQNQVI 263
V+V TP + + ++ M ++ Y+V DEAD ++ F Q+
Sbjct: 208 QATKLRNGVHVVVGTPGRINDCVE------MAYLVLNQCSYIVLDEADRMIDLGFAPQI- 260
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
E+ L M G + +++
Sbjct: 261 ---------EQILDAMG----------------------------------GKLKSENET 277
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDADW 381
E +E +KD + K + +AT+P ++ A L+ + D
Sbjct: 278 EAYEQE-------RKDLEILGKAVPSHRLTAMFSATMPSEVERIAKRYLRHPVIVQIGDQ 330
Query: 382 ISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVT 441
SG N R+ ++ + ++ Q ++ + + R + +VF N V
Sbjct: 331 DSGK-----NARITQRVLYLSSSKQKESTLRDILRR---SRSDEKIIVFVNEKKHADGVG 382
Query: 442 KILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFA 501
++++ AG C H + E+R + L F+ G V V TD A RG+DIP+V VI D
Sbjct: 383 RMVENAGRRCVVLHGGKTQEQREENLGLFRRGGVVLVATDVAGRGLDIPDVHQVINFDLP 442
Query: 502 TSAVD-FLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
T ++D + HR+GRT RAG+ GL TS T+ + ++ ++
Sbjct: 443 TRSIDNYCHRIGRTGRAGKEGLATSFITDEDEGIMAQLK 481
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 196/473 (41%), Gaps = 101/473 (21%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
SDT N T+ GL +++A+ G+ P+ +QA ++ VL G+DV+ AA+TG+GK
Sbjct: 2 SDTATTPTNATFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGK 61
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSAD 192
T S+ +P+I++L S +P R P +L+L P L +QV AN S
Sbjct: 62 TASFSLPIIQRLLPLANTSA--------SPARHPVRALILTPTRELADQVA--ANVQSYA 111
Query: 193 NGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
L R+ V GG +++P+ E RGV+ ++ +
Sbjct: 112 KHTAL-RSAVVFGGV-------------------DMNPQS---AELRRGVEILIATPGRL 148
Query: 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
L + + + M DE RM + G PDLQ NL +
Sbjct: 149 LDHVQQKTANLGQVQMLVLDEA--DRMLDMGF------------LPDLQRILNL---LPT 191
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
+ L T S IKK + Y R+ Q I VA TA V
Sbjct: 192 ERQTL--------LFSATFSPEIKK-----LASTYLRNPQTIEVA-----RSNSTATNVT 233
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432
+ ++ EV + A+++ ++ER + +VF N
Sbjct: 234 QIVY-----------------------EVAEGDKTGAVVQLIRER-----SLKQVIVFCN 265
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIP 490
+ + + L+ G+ H D S ER + L F+ +G + V TD AARG+DI
Sbjct: 266 SKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFK-RGEIEALVATDVAARGLDIA 324
Query: 491 NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
+ VI D +A D++HR+GRT RAG G SL++ + R + I + K
Sbjct: 325 ELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQLADIEKLIK 377
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%)
Query: 308 DEYISDEGNFEGDSDVEGLTEETKS--GSIKKKDWRRVRKNYQRSKQYIFVAATL--PIN 363
D + DE + D+ + G +E + G+I+ +R +S Q I AAT+ PI+
Sbjct: 195 DTVVVDEADTLFDAKM-GFRKELDAVLGTIQASAAKR-----NQSLQMILAAATIRSPID 248
Query: 364 GKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAE 423
+LK+ F + +S + +H ++E+++ V +++ AL EA+ A
Sbjct: 249 ------QILKKKFGELRVVSDDKIHKTPASIREEFVRVNPESKHSALREALHLHRRRAA- 301
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQEKGGV--FVCT 480
+TM+F +V + +L+ G + C H D+ R + F E V VCT
Sbjct: 302 --KTMIFCRNSASVRSTEHMLREHGFQDAVCLHGDMPPARRHDAIHAFTEDSNVNILVCT 359
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
D AARG+D+ V HV+ DF SAVD++HR GRT RAG+ GLVTSL T+ + L +I
Sbjct: 360 DLAARGLDVEAVKHVVMFDFPKSAVDYVHRAGRTGRAGEQGLVTSLVTKHDLTLAMSI 417
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LG+ R + L+ P+ +Q S+ +L+ D++ AA+TG+GKT +YLVP+IE
Sbjct: 35 SFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGKTLAYLVPVIE 94
Query: 145 KLCTALGDSENSNSDKEPTP---PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++ + K PT R +LVL P+ L QV +A LS +
Sbjct: 95 QILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSHSAK---FASC 151
Query: 202 AVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ G+ I + D+I+ TP + I + FV + VV DEAD L
Sbjct: 152 TITSGERKSIQQKNTSRRLDLIIGTPGRVAKCIS----KGDFFVSCIDTVVVDEADTLF 206
>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 660
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 191/462 (41%), Gaps = 98/462 (21%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ + + L+ ++ G+ +P+ VQ+ + L+ +D++ A+TGSGKT SYL+P I
Sbjct: 157 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 216
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++ + + + +P +L+L P L Q+ A + VR V V
Sbjct: 217 NEILLNISNRPPYSPGSHSSPQ---ALILAPTRELSLQIYGEARKFTYHTP---VRCVVV 270
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG DP R + E RG K +V
Sbjct: 271 YGGA---------------------DP-RHQVHELSRGCKLLVATPG------------- 295
Query: 264 RLINMF-----RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
RL++MF RF E + ++E+ ++ L+M + +Q
Sbjct: 296 RLMDMFSRGYVRFSEIRFLILDEA--DRMLDMGFEPQIRMIVQGP--------------- 338
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL-KQMFP 377
DSD+ ++G +Q + +AT P+ ++ A + + F
Sbjct: 339 -DSDM------PRAGQ----------------RQTLLYSATFPVEIQRLAREFMCRHSFL 375
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
+ N +WIE Q AL+ ++E E +VF
Sbjct: 376 QVGRVGSTT---ENITQDVRWIEDPDKRQ--ALLTLLREN-----EGKLVLVFVEKKRDA 425
Query: 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVI 496
+ + L+ + + C H D ER + L F+ V V TD A+RG+DIPNV VI
Sbjct: 426 DYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPNVGVVI 485
Query: 497 QADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
Q D ++ D++HR+GRT RAG+ G+ S + E NR++VD +
Sbjct: 486 QYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNIVDDL 527
>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 616
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 191/462 (41%), Gaps = 98/462 (21%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ + + L+ ++ G+ +P+ VQ+ + L+ +D++ A+TGSGKT SYL+P I
Sbjct: 115 LSFSEMNMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAI 174
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++ + + + +P +L+L P L Q+ A + VR V V
Sbjct: 175 NEILLNISNRPPYSPGSHSSPQ---ALILAPTRELSLQIYGEARKFTYHTP---VRCVVV 228
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG DP R + E RG K +V
Sbjct: 229 YGGA---------------------DP-RHQVHELSRGCKLLVATPG------------- 253
Query: 264 RLINMF-----RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
RL++MF RF E + ++E+ ++ L+M + +Q
Sbjct: 254 RLMDMFSRGYVRFSEIRFLILDEA--DRMLDMGFEPQIRMIVQGP--------------- 296
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL-KQMFP 377
DSD+ ++G +Q + +AT P+ ++ A + + F
Sbjct: 297 -DSDM------PRAGQ----------------RQTLLYSATFPVEIQRLAREFMCRHSFL 333
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
+ N +WIE Q AL+ ++E E +VF
Sbjct: 334 QVGRVGSTT---ENITQDVRWIEDPDKRQ--ALLTLLREN-----EGKLVLVFVEKKRDA 383
Query: 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVI 496
+ + L+ + + C H D ER + L F+ V V TD A+RG+DIPNV VI
Sbjct: 384 DYLERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPNVGVVI 443
Query: 497 QADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
Q D ++ D++HR+GRT RAG+ G+ S + E NR++VD +
Sbjct: 444 QYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNIVDDL 485
>gi|295670143|ref|XP_002795619.1| ATP-dependent RNA helicase dbp7 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284704|gb|EEH40270.1| ATP-dependent RNA helicase dbp7 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 782
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 205/463 (44%), Gaps = 51/463 (11%)
Query: 85 TWKSLGLSDRL-IRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ SLGLS L + + P+ VQ +++ +L + D I A+TGSGKT +YL+PL
Sbjct: 163 TFTSLGLSPTLAVHLMTKLELKAPTAVQKSAISQLLKEECDAFIQAQTGSGKTLAYLLPL 222
Query: 143 IEKLCT---------ALGDSENSNSDKEPTPPR-----APSLVLCPNV-VLCEQVVRMAN 187
+++L G E N+ AP+ LC + V+ EQ++R A+
Sbjct: 223 VQRLINLSKTNGKAFGRGGGEEGNTAVHRDSGLFAIILAPTRELCKQISVVLEQLLRCAH 282
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRG 241
+ A V GG+ K +++V+TP L ++++ ++ V
Sbjct: 283 ---------WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTKVLDVSN 330
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ 301
V+++V DE D L+ F+ ++ ++ + DE+Q S K + + S+ + ++Q
Sbjct: 331 VRWLVLDEGDRLMDLGFEEEIQGIVK--KLDERQKSNGIPGLPNKRVTILCSATLKMNVQ 388
Query: 302 DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLP 361
L + + D + + D D E K+ + + Q + Y VAA L
Sbjct: 389 ---RLGEISLKDAVHVQADPDDECNDAMAKNNA----NNSEFSVPAQLKQSYSVVAAKLR 441
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
+ T A++K+ F + + + EV + E KE
Sbjct: 442 L---VTLAALMKRTFARKGSVMKAIVFVSCADSVDFHFEVFSRQDSENKNEGEKEG-PIV 497
Query: 422 AETSRTMVFANTVDAVYAVTKILK-TAGIECYCYHKDLSLEERAKTLVNF--QEKGGVFV 478
AETS T A+ + T T + Y H L R TL +F Q + V +
Sbjct: 498 AETSFTTNLASVHVTIAKATAFSNPTNPVTLYKLHGSLPQHVRTSTLTSFARQSEAAVLI 557
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
CTD AARG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 558 CTDVAARGLDLPNVDFVIEYDPAFSADDHLHRIGRTARLGRDG 600
>gi|32565321|ref|NP_498260.2| Protein DDX-23 [Caenorhabditis elegans]
gi|351058526|emb|CCD65989.1| Protein DDX-23 [Caenorhabditis elegans]
Length = 730
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 186/450 (41%), Gaps = 81/450 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ G D + +A++ G+ P+ +Q ++ L +DV+ AETGSGKT ++L+PL+
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ + + D P ++++ P L +Q+ N G ++ V+V G
Sbjct: 363 ITSLPKMERQEHRDLGPY-----AIIMAPTRELAQQIEEETNKFGKLLG---IKTVSVIG 414
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G QG + +V+++TP LL+ ++ R + YV+ DEAD +L F+
Sbjct: 415 GASREDQGMKLRMGVEVVIATPGRLLDVLE----NRYLLLNQCTYVILDEADRMLDMGFE 470
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
V +K L M ++ ++K DE+ ++E +G
Sbjct: 471 PDV----------QKVLEYMPDTNMKKDT-------------------DEFDNEEALMKG 501
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA 379
S E + + R+ + Y R + + + GK T
Sbjct: 502 FSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA----GKPTE----------- 546
Query: 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
R+++ V D + L+E ++ + + ++F N
Sbjct: 547 -------------RVEQVVYMVPEDRKRKKLVEVLESQFQ-----PPIIIFVNQKKGADM 588
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
++K L G + H ++R L +E + V TD A RGID+ +VS V+
Sbjct: 589 LSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNY 648
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
D A S D+ HR+GRT RAG++G + T
Sbjct: 649 DMAKSIEDYTHRIGRTGRAGKHGKAITFLT 678
>gi|431793948|ref|YP_007220853.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784174|gb|AGA69457.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 432
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 113/465 (24%), Positives = 196/465 (42%), Gaps = 101/465 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+ L+ AL+ P+ +Q ++ +L+ +DVV AETGSGKT +YL+P+I+
Sbjct: 26 SFVQLGVHSLLVDALQKEKIIEPTKIQQEAIPLILNNQDVVGQAETGSGKTLAYLLPIIQ 85
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ L EN +L+L P L QV R +L+ G +
Sbjct: 86 KI--DLLKKENQ------------ALILTPTHELALQVQRQIQSLAEHLGGTI------- 124
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
T AA++ N++ R+ +E ++ E ++ GS +++
Sbjct: 125 ---------------TSAAVIGNVNITRQ--IEKLK--------EKPQIIVGSA-GRILE 158
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
LI +K++S S K + +D + L DE+NLQ
Sbjct: 159 LIQ-----KKKIS----SQTIKTIVLDEAD----RLLDEKNLQT---------------- 189
Query: 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384
+ V K + +Q + +AT+P K A LK D +
Sbjct: 190 ---------------VKAVLKTTLKDRQVLLFSATVPPETVKQAADFLK----DPAILRV 230
Query: 385 NYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444
P + ++ +++ L + ++ E +R ++F N + + + L
Sbjct: 231 TEKATVTPTIAHQYFLCEQRDKLELLRKLIRH-----LEPTRALIFINKSEEIEKTVERL 285
Query: 445 KTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATS 503
K G+E ++R + + NF+ K + V +D AARG+DI N++H+ D
Sbjct: 286 KYHGLEAEAISGSADKDKRRQAMENFRNGKTNLLVASDLAARGLDIKNITHIFNLDLPED 345
Query: 504 AVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+LHRVGRT RAGQ G+ SL TE+ + + I K+ P+
Sbjct: 346 PHLYLHRVGRTGRAGQSGVAISLATENEKHFITKIENTLKISIPL 390
>gi|398364607|ref|NP_011437.3| RNA-dependent ATPase DBP3 [Saccharomyces cerevisiae S288c]
gi|1708151|sp|P20447.2|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
box protein 3; AltName: Full=Helicase CA3
gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
gi|285812127|tpg|DAA08027.1| TPA: RNA-dependent ATPase DBP3 [Saccharomyces cerevisiae S288c]
gi|392299185|gb|EIW10279.1| Dbp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 523
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 122/450 (27%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL D+L GS + +N DE
Sbjct: 233 QVVVATPGRLL-------------------------DLLQEGSVD---LSQVNYLVLDEA 264
Query: 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334
RM E G E+ D++ + ET +
Sbjct: 265 --DRMLEKGFEE-----------------------------------DIKNIIRETDASK 287
Query: 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN----- 385
+Q + AT P ++ A + K + D ++ N
Sbjct: 288 ----------------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQ 331
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +PR KE+ L+E +K+ + + ++FA V + LK
Sbjct: 332 IVEVVDPRGKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G H DLS ++R + L F+ K + + TD AARG+DIPNV VI F +
Sbjct: 381 YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
D++HR+GRT RAGQ G +L+TE + L
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
Length = 523
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 122/450 (27%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL D+L GS + +N DE
Sbjct: 233 QVVVATPGRLL-------------------------DLLQEGSVD---LSQVNYLVLDEA 264
Query: 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334
RM E G E+ D++ + ET +
Sbjct: 265 --DRMLEKGFEE-----------------------------------DIKNIIRETDASK 287
Query: 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN----- 385
+Q + AT P ++ A + K + D ++ N
Sbjct: 288 ----------------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQ 331
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +PR KE+ L+E +K+ + + ++FA V + LK
Sbjct: 332 IVEVVDPRGKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G H DLS ++R + L F+ K + + TD AARG+DIPNV VI F +
Sbjct: 381 YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
D++HR+GRT RAGQ G +L+TE + L
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV--TVDTQ-- 406
K + V+AT+ KT +++ P + I LH P LK K+++ ++D
Sbjct: 282 KSCVIVSATMSDKVVKT----IEEDLPGIEKIDTPSLHRAAPNLKHKFVDCPGSIDKMAV 337
Query: 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
V LIE +F A +TMVFANT+ + AV L AG+ Y+ D++ E+RA++
Sbjct: 338 VTQLIEG-----DFRA-GKKTMVFANTMPSCQAVEYALVEAGLPVVMYNGDMTSEKRAES 391
Query: 467 LVNFQEKGG------VFVCTDAAARGIDI-----PNVSHVIQADFATSAVDFLHRVGRTA 515
+ F V VCTD AARG+D V HV+ DF +AVD+LHR GRTA
Sbjct: 392 MEAFVSGAAEDNSLVVMVCTDLAARGLDFGGDSKSKVDHVVNFDFPMNAVDYLHRSGRTA 451
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG G VT+L + +R L I A KLG P+
Sbjct: 452 RAGAPGKVTNLVAKKDRVLAGEIDVAVKLGNPL 484
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 143/330 (43%), Gaps = 37/330 (11%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
FA AA ++ + S + +++ GL D L A + G P+ +Q+ ++ +L
Sbjct: 71 FAIAAKRMAKQTKSPNRRARAAAASFRETGLDDELCAATDALGLETPTDIQSVAIPRILR 130
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLC 179
G + +IA+ TGSGKT +YL+P+I ++ EN+ P+ P LV+ P L
Sbjct: 131 GGNYMIASHTGSGKTLTYLLPIIHRIRR----EENATVGGGRARPKRPRVLVVSPTRELA 186
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRR 233
EQV +A +LS + V GG + + DV+V TP L+ ++ +
Sbjct: 187 EQVAGVAKSLSH---HARFSSALVIGGDKFATQRTQLDRSLDVVVGTPGRLVKHV---KE 240
Query: 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQ-----LSRMNESGVEKPL 288
M R V +VV DEAD L F + + L+ + + +S V K +
Sbjct: 241 GNMYLGR-VTHVVLDEADTLFEAGFGDDIRVLLGPLQKKPEGKSCVIVSATMSDKVVKTI 299
Query: 289 EMDNSSLTQPDL----QDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVR 344
E D + + D + NL+ +++ G+ + + V L E G + V
Sbjct: 300 EEDLPGIEKIDTPSLHRAAPNLKHKFVDCPGSIDKMAVVTQLIE----GDFRAGKKTMVF 355
Query: 345 KNYQRSKQ---YIFVAATLPI---NGKKTA 368
N S Q Y V A LP+ NG T+
Sbjct: 356 ANTMPSCQAVEYALVEAGLPVVMYNGDMTS 385
>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
gi|365765558|gb|EHN07065.1| Dbp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 523
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 122/450 (27%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL D+L GS + +N DE
Sbjct: 233 QVVVATPGRLL-------------------------DLLQEGSVD---LSQVNYLVLDEA 264
Query: 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334
RM E G E+ D++ + ET +
Sbjct: 265 --DRMLEKGFEE-----------------------------------DIKNIIRETDASK 287
Query: 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN----- 385
+Q + AT P ++ A + K + D ++ N
Sbjct: 288 ----------------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQ 331
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +PR KE+ L+E +K+ + + ++FA V + LK
Sbjct: 332 IVEVVDPRGKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G H DLS ++R + L F+ K + + TD AARG+DIPNV VI F +
Sbjct: 381 YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
D++HR+GRT RAGQ G +L+TE + L
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 24/226 (10%)
Query: 339 DWRRVRKNYQRS---KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395
+ RR+ + Q++ KQ I V+AT+ +K A V ++ PD I LH P L+
Sbjct: 172 EVRRLLRPLQKNPEGKQCIVVSATM---AEKVAKMVSAEL-PDLQRIDTPSLHKSAPNLR 227
Query: 396 EKWIEVTVDTQVDALIEAVKERLEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYC 453
++++ VD + A+ E++ G S +TMVF NT+ + AV L A +
Sbjct: 228 HRFVDCP--GSVDKM--AIVEQIVSGDFRSGKKTMVFCNTMPSCQAVEFSLNEAELPVVM 283
Query: 454 YHKDLSLEERAKTLVNFQEKGG------VFVCTDAAARGIDIPN-----VSHVIQADFAT 502
Y+ D++ EER +++ F E V VCTD AARG+D V HV+ DF
Sbjct: 284 YNGDMTAEERKESMREFVEGSHADGTAVVMVCTDLAARGLDFGGGEKGKVDHVVNFDFPM 343
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
+ +D++HR GRTARAG G VT+L + +R L I A K+GQP+
Sbjct: 344 NPIDYIHRSGRTARAGATGKVTNLVAKKDRILAQEIDVAVKMGQPL 389
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 41/307 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGL + L+ A ++ G RP+ +QA+++ +LSG ++A+ TGSGKT +YL+P+I+
Sbjct: 2 SFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVIQ 61
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ A + + +P PR L++ P L EQV +A A+S + +
Sbjct: 62 QMKDA---ERETGARAKPKRPRV--LIVGPTRELAEQVRSVAKAVSHHCK---FSSELII 113
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+ + + DV+V TP ++ + + F+ V +V+ DEAD L F
Sbjct: 114 GGEKFATQRQVLDRSLDVVVGTPGRIIKHCEEGNL----FLSNVTHVILDEADTLFEAGF 169
Query: 259 QNQVIRLINMFRFDE--KQLSRMNESGVEKPLEMDNSSLTQPDLQ---------DEENLQ 307
++V RL+ + + KQ ++ + EK +M ++ L PDLQ NL+
Sbjct: 170 GDEVRRLLRPLQKNPEGKQCIVVSATMAEKVAKMVSAEL--PDLQRIDTPSLHKSAPNLR 227
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVA---ATLPI-- 362
++ + G D + E+ SG + V N S Q + + A LP+
Sbjct: 228 HRFV----DCPGSVDKMAIVEQIVSGDFRSGKKTMVFCNTMPSCQAVEFSLNEAELPVVM 283
Query: 363 -NGKKTA 368
NG TA
Sbjct: 284 YNGDMTA 290
>gi|160380616|sp|A6ZUA1.1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
box protein 3; AltName: Full=Helicase CA3
gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
Length = 523
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 122/450 (27%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL D+L GS + +N DE
Sbjct: 233 QVVVATPGRLL-------------------------DLLQEGSVD---LSQVNYLVLDEA 264
Query: 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334
RM E G E+ D++ + ET +
Sbjct: 265 --DRMLEKGFEE-----------------------------------DIKNIIRETDASK 287
Query: 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN----- 385
+Q + AT P ++ A + K + D ++ N
Sbjct: 288 ----------------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQ 331
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +PR KE+ L+E +K+ + + ++FA V + LK
Sbjct: 332 IVEVVDPRGKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G H DLS ++R + L F+ K + + TD AARG+DIPNV VI F +
Sbjct: 381 YNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
D++HR+GRT RAGQ G +L+TE + L
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>gi|349578148|dbj|GAA23314.1| K7_Dbp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 523
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 175/450 (38%), Gaps = 122/450 (27%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL D+L GS + +N DE
Sbjct: 233 QVVVATPGRLL-------------------------DLLQEGSVD---LSQVNYLVLDEA 264
Query: 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334
RM E G E+ D++ + ET +
Sbjct: 265 --DRMLEKGFEE-----------------------------------DIKNIIRETDASK 287
Query: 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN----- 385
+Q + AT P ++ A + K + D ++ N
Sbjct: 288 ----------------RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQ 331
Query: 386 YLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+ +PR KE+ L+E +K+ + + ++FA V + LK
Sbjct: 332 IVEVVDPRGKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLK 380
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSA 504
G H DLS ++R + L F+ K + + TD AARG+DIPNV VI F +
Sbjct: 381 YNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTV 440
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
D++HR+GRT RAGQ G +L+TE + L
Sbjct: 441 EDYVHRIGRTGRAGQTGTAHTLFTEQEKHL 470
>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
Length = 701
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 186/450 (41%), Gaps = 81/450 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ G D + +A++ G+ P+ +Q ++ L +DV+ AETGSGKT ++L+PL+
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ + + D P ++++ P L +Q+ N G ++ V+V G
Sbjct: 363 ITSLPKMERQEHRDLGPY-----AIIMAPTRELAQQIEEETNKFGKLLG---IKTVSVIG 414
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G QG + +V+++TP LL+ ++ R + YV+ DEAD +L F+
Sbjct: 415 GASREDQGMKLRMGVEVVIATPGRLLDVLE----NRYLLLNQCTYVILDEADRMLDMGFE 470
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319
V +K L M ++ ++K DE+ ++E +G
Sbjct: 471 PDV----------QKVLEYMPDTNMKKDT-------------------DEFDNEEALMKG 501
Query: 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA 379
S E + + R+ + Y R + + + GK T
Sbjct: 502 FSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSA----GKPTE----------- 546
Query: 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
R+++ V D + L+E ++ + + ++F N
Sbjct: 547 -------------RVEQVVYMVPEDRKRKKLVEVLESQFQ-----PPIIIFVNQKKGADM 588
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
++K L G + H ++R L +E + V TD A RGID+ +VS V+
Sbjct: 589 LSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNY 648
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
D A S D+ HR+GRT RAG++G + T
Sbjct: 649 DMAKSIEDYTHRIGRTGRAGKHGKAITFLT 678
>gi|345483582|ref|XP_001601543.2| PREDICTED: probable ATP-dependent RNA helicase CG8611-like [Nasonia
vitripennis]
Length = 961
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 128/500 (25%), Positives = 211/500 (42%), Gaps = 87/500 (17%)
Query: 89 LGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
LG+ ++ LE N + VQ ++ +LSGKDV++ ++TGSGKT +Y +P+IE L
Sbjct: 295 LGIHAYAVQNLEQNMKITTMTTVQKKAIPVILSGKDVLVRSQTGSGKTLAYALPIIETLQ 354
Query: 148 TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA--VCG 205
+ K +LV+ P L Q L +P V + G
Sbjct: 355 RVRPKLARDSGIK--------ALVVVPTRELALQTYECFLKLV----KPFTWIVPGYLVG 402
Query: 206 GQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G+ K V+V+TP LL++I + R++ + V DEAD +L ++
Sbjct: 403 GEKRKAEKARLRKGCTVLVATPGRLLDHIKHTQALRLDLIN---CFVLDEADRMLDMGYE 459
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEM-----------DNSSLTQPDLQDEENLQD 308
+ ++ E L + SG + P++M N S + + E N +D
Sbjct: 460 KDISGIVAAL---ENNLPASDNSGYD-PMQMLRQRVNPEAADQNKSEEKEGKRIESNEED 515
Query: 309 ------------EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFV 356
+Y SD E D + + E S +I++ D R +Q I +
Sbjct: 516 NSDEERKIITKQQYNSD-SEEEPDDEADLKKSEPASSNIEENDDR------PHKRQTILL 568
Query: 357 AATLPINGKKTAGAVLKQ-MFPDA-----DWISGNYLHFHN-----PRLKEKWIEVTVDT 405
+ATL +K AG + F DA + + GN ++ + + +I
Sbjct: 569 SATLTQAVEKLAGLTMHNPAFVDAAKENVEAVGGNLSEINDDLVVPESVSQSYIVTPPKL 628
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----------------GI 449
++ L + R + + + +VF T D + ++L T +
Sbjct: 629 RMVTLSAYIAGRCQAQG-SHKILVFMATQDMIDYHAEVLSTVLNKPVDEEDEDSEPLVDV 687
Query: 450 ECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
E + H ++ +ER F+ K GV +CTD AARG+D+P V V+Q TS D++
Sbjct: 688 EFFKLHGSMTQKERTDIFKTFRAAKSGVLLCTDVAARGLDLPKVDTVVQYTGPTSTRDYV 747
Query: 509 HRVGRTARAGQYGLVTSLYT 528
HR+GRTARAG G+ T T
Sbjct: 748 HRIGRTARAGTSGVSTIFLT 767
>gi|198421807|ref|XP_002128557.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX28
(Mitochondrial DEAD box protein 28) [Ciona intestinalis]
Length = 570
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 137/268 (51%), Gaps = 28/268 (10%)
Query: 5 RSSSMFHFYKLSSPPKLL-SKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGR--PFRGF 61
RS KL+ P KLL S + +S +N + F P L + W P R F
Sbjct: 86 RSRKGVSLLKLAKPGKLLISSSDKDTSMYTNEFITKFQP---PVLSSSTWTSHRSPGRSF 142
Query: 62 AAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
+ + +N S F ++ ++ L L +++AL +G RP+++QA S+ +L G
Sbjct: 143 KIHSNM---ENPS----FKEEFSSFNDLLLDTEILQALRLNGLDRPTVIQAKSIPSILKG 195
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181
+V+ AAETGSGKT +YL+P+I KL + + D+ P+A L+L P L +Q
Sbjct: 196 NNVMFAAETGSGKTFAYLLPIIHKLMRSKAE---GGGDQVFVSPKA--LILTPTKELSQQ 250
Query: 182 VVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241
V+RMA +L L VA G D++VSTP L+N++ +RR+ E
Sbjct: 251 VLRMALSLK------LPIQVASTESIGKTDFNVDLMVSTPVPLINSL---KRRKFEL-GN 300
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMF 269
+++VV DE D LL SF N++ +++ F
Sbjct: 301 IEFVVLDECDTLLDDSFANKMQHILSRF 328
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 10/183 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+S Q I +AT P ++ + D I YLH +P + ++ V ++
Sbjct: 342 QSAQLILCSATFPSYASDALDDIIS--MEEIDCIKSGYLHRVSPHVTHNFMRVKPSEKIS 399
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
++ + + + MVF NT +V V K L GI + + ++R TL
Sbjct: 400 EMVALLNK-----PDRGPVMVFCNTRHSVRQVIKGLHENGIAALSVNGSMHTKDRYSTLQ 454
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTS 525
FQ V V TD A+RG+D V HVI + ++ D++HR GR R GQ G+VTS
Sbjct: 455 QFQAGTDDVLVSTDVASRGLDTKQVKHVINYEVPSNVSDYIHRCGRVGRVGQTHAGVVTS 514
Query: 526 LYT 528
L +
Sbjct: 515 LVS 517
>gi|307105623|gb|EFN53871.1| hypothetical protein CHLNCDRAFT_58353 [Chlorella variabilis]
Length = 572
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 345 KNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV-TV 403
+ ++ + + V+AT+ K G ++ + FP + + LH + ++ +
Sbjct: 244 RGKEQPARCVLVSATM----SKAVGRLIDEEFPGMRRVETSSLHRGVAGARHAFVPMPAA 299
Query: 404 DTQVDALIEAVKERLEFGA------ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++D L++A + R G R MVF NT+ + A L G++ CYH D
Sbjct: 300 ANKLDLLLQASR-RGGLGVVEGEHQRGKRVMVFCNTLASCRAADHFLTERGLQTACYHGD 358
Query: 458 LSLEERAKTLVNFQEKGGV-------FVCTDAAARGIDIPN-VSHVIQADFATSAVDFLH 509
+ +ER + +F GV VCTD AARG+D+P V HV+ DF + +D+LH
Sbjct: 359 VPPDERRAAMQSFAGGDGVSGERPPLLVCTDLAARGLDMPGRVDHVVNFDFPLNPIDYLH 418
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
R GRTARAG G +TSL + +R L + I A + G P+
Sbjct: 419 RTGRTARAGATGKITSLVAKGDRVLAERIEEALQRGLPL 457
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 14/195 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK--DVVIAAETGSGKTHSYLVPL 142
T+ LG+S L AL G P+ +QAA+V +L + D ++A+ TGSGKT +YL+PL
Sbjct: 63 TFTQLGVSQELQAALAEKGISEPTEIQAAAVPALLQHRAADFLLASHTGSGKTLAYLLPL 122
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS--ADNGEPLVRA 200
++ L G+ + + +LVL P L +Q++R+A ALS A +V
Sbjct: 123 VQLLKE--GEQLRGAAARPRR---PRALVLGPTRELTDQILRVAKALSHTAKFRSSVVNG 177
Query: 201 VAVCGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GGQ + +P DV+V TP ++ + + + + V+ VV DEAD + F
Sbjct: 178 GGDMGGQREALERPLDVLVGTPQRVMQHAE----KSHLYYGDVEVVVLDEADTMFDRGFG 233
Query: 260 NQVIRLINMFRFDEK 274
+V ++ R E+
Sbjct: 234 PEVKAILAAVRGKEQ 248
>gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
Length = 750
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 190/463 (41%), Gaps = 104/463 (22%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W L L+RA++ +G+ +PS +Q A++ L +DV+ AETGSGKT ++++P++
Sbjct: 331 WSESKLGTELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 390
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPLVRAV 201
+ T L N + P ++V+ P L +Q+ V+ A L ++ V
Sbjct: 391 I-TRLPPISEENEAEGPY-----AVVMAPTRELAQQIEEETVKFATYLG-------IKVV 437
Query: 202 AVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
++ GG QG+ I + G + V+ +L C
Sbjct: 438 SIVGGQSIEEQGFKIRQ---------------------------GCEIVIATPGRLLDCL 470
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKP----LEMDNSSLTQPDLQDEENLQDEYIS 312
+ V+ N DE RM + G E L+ SS +P+ +DEE L ++ I
Sbjct: 471 ERRYAVLNQCNYVVLDEA--DRMIDMGFEPQVVGVLDAMPSSNLKPENEDEE-LDEKRIY 527
Query: 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVL 372
T S ++ R RK Y R+ V T+ GK T
Sbjct: 528 R-------------TTYMFSATMPPAVERLARK-YLRNP----VVVTIGTAGKAT----- 564
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432
D I+ N + + ++ D G +T+ +VF N
Sbjct: 565 -------DLITQNVIMVKESEKMPRLQKILTD---------------LGDKTA--IVFCN 600
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPN 491
T K L AG H S ++R +L F+ + V V TD A RGIDIP+
Sbjct: 601 TKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRRFNVLVATDVAGRGIDIPD 660
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
V+HVI + +S + HR+GRT RAG+ G+ TS T N D+
Sbjct: 661 VAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTLENTDI 703
>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 494
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 10/203 (4%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q I VAAT K+ G V +MF +S N + +K+ ++ V + L
Sbjct: 234 QSILVAAT----ATKSVGRVWNRMFEGIKLVSDNQFNRIPKEIKQTFVRVAPQAKYTVLR 289
Query: 412 EAVKERLEFG-AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+A+++ G A+ RT++F N + + A +L+ G + HKD+ R + NF
Sbjct: 290 DALEQHRGRGKAKFQRTIIFCNDIASCQAAEHMLRQNGFKTASLHKDVPKPIRQAAIQNF 349
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
V VCTD RG+DI ++ HVI DF S +D++HRVGRT RAG+ G VTS T+
Sbjct: 350 DSGSVPVLVCTDLGGRGLDIDSIEHVIMLDFPRSVIDYIHRVGRTGRAGKAGYVTSFMTK 409
Query: 530 SN----RDLVDTIRRAAKLGQPV 548
+ R L ++R A K P+
Sbjct: 410 GDTTVYRMLQKSMRDAEKKTHPL 432
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D T++ L L +AL SG +P+ +Q S+ VLSG +++ A+TG+GKT SY++
Sbjct: 34 DQKSTFEQYSLHANLCKALHESGIHKPTSIQRKSINAVLSGHNILCLAQTGTGKTLSYMI 93
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+IEK+ + ++ + P R L+ P+ L Q+ +A L+ +
Sbjct: 94 PIIEKIKRS-ESAKLRETQAAPLISRPRVLIAVPSRELALQLGSVAKQLA--HHVKFASC 150
Query: 201 VAVCGG----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V G Q + +P D+++ TP ++ I +++ ++ + ++ DEAD L
Sbjct: 151 VVTNGEHKKVQQQKLARPIDILIGTPGRIVTCI----KKQDFYLSQIDTLILDEADTLF 205
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 122/248 (49%), Gaps = 19/248 (7%)
Query: 313 DEGN-FEGDSDVEGLTE-----ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKK 366
D+GN F G D L E E G K+ R ++ + K + V+AT+P KK
Sbjct: 128 DQGNLFLGSVDAMVLDEADTLFEAGFGDEVKRLLRPLKARPE-GKTCVLVSATMPDRLKK 186
Query: 367 TAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSR 426
++ + P +I + LH P LK ++++ D ++E + + +
Sbjct: 187 ----LVDEELPALQYIKTDSLHRSAPGLKHRFVDCPGDVDKMTVLEQIVAPEH--KQGKK 240
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF----QEKGGVFVCTDA 482
M+F NT+ + AV + + A I YH D++ + RA + F ++ VCTD
Sbjct: 241 LMIFCNTLPSCIAVERTMFEADIRTVQYHGDMTSDARADAMREFIDADADENLTMVCTDL 300
Query: 483 AARGIDIP--NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
AARG+D V HV+ DF +++D++HR GRTARAG G VT+L + +R L I
Sbjct: 301 AARGLDFGRVKVDHVVNFDFPMNSLDYIHRSGRTARAGAGGKVTNLVAKKDRVLASEIDN 360
Query: 541 AAKLGQPV 548
A KLG P+
Sbjct: 361 AVKLGLPI 368
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 107 PSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPP 165
P+ +Q ++ + G + +A+ TGSGKT +YL+P+I+++ A E + D+ P
Sbjct: 6 PTEIQTKAIDVIGRGAGNAFVASHTGSGKTLAYLLPVIQRMKAA----EIAAGDRLAKPK 61
Query: 166 RAPSLVLCPNVVLCEQVVRMANALS--ADNGEPLVRAVAVCGGQGWPIGKP-DVIVSTPA 222
R +V CP L EQV +A ALS A LV G Q + DV++ TP
Sbjct: 62 RPKVVVACPTRELAEQVAEVAKALSHVAKFSSYLVVGGRRLGTQKERLDSAIDVVIGTPG 121
Query: 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L+ ++D F+ V +V DEAD L F ++V RL+
Sbjct: 122 RLIKHVDQGNL----FLGSVDAMVLDEADTLFEAGFGDEVKRLL 161
>gi|407420747|gb|EKF38661.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 712
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 129/518 (24%), Positives = 203/518 (39%), Gaps = 86/518 (16%)
Query: 49 RLNQWKG-RPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRP 107
R +WKG P + K+ + D V W LGL L+RA+ + GF P
Sbjct: 25 RKEEWKGAMPGETIPVNNSCCESKHRNGAGNQTQDQVMWIELGLCKALVRAVTHIGFLSP 84
Query: 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167
+ VQ ++ VL G DV A TGSGKT ++++PL+ L T + + K
Sbjct: 85 TPVQVQAIPAVLGGSDVCARAVTGSGKTAAFILPLLHVLLTRAPQKQLHSGGKRRF---I 141
Query: 168 PSLVLCPNVVL---CEQVVRMANALSADNGEPLVRAVAVCG-----GQGWPIGKPDVIVS 219
S++L P L C+Q+ + L+ G L A+A+ G + PD++++
Sbjct: 142 RSIILLPTRELGMQCQQM--LQQILTHTTG--LTVALAIGGIAQAAQEAALESIPDILIA 197
Query: 220 TPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSFQNQVIRLI--------NMFR 270
TP L++ + R V GV+ VV DE D +L + ++QV+ ++ +
Sbjct: 198 TPGRLVDLLHNYRGAHGSLDVSGVEMVVLDECDKMLTVTLKDQVVDILQRVPEETRQVLM 257
Query: 271 FDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ--------DEYISDEGNF----- 317
F S ++E E E N + LQ + Q D + N
Sbjct: 258 FSATMTSEVDEFAKEHLFEPKNVDVGHVALQSKLRQQFVRIRLPSDATTTTRTNAPLSVC 317
Query: 318 --EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQM 375
EG+ +EG EE +K RSK+ A + ++ +T +
Sbjct: 318 YSEGNGKMEGDDEEKVDN----------KKKRIRSKRLRDAAKSEAVDSHETEDS----- 362
Query: 376 FPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVD 435
H ++K +++ L G +T+VF
Sbjct: 363 ------------SEHITKIKSRFLVA----------------LCLGYFREKTIVFTRYRT 394
Query: 436 AVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVS 493
+ + + G + EER +L F G V TD A+RG+DI VS
Sbjct: 395 TAHRLHLLFTALGFTSAELQGNQLQEERFASLKRFAS-GEVQYLFSTDVASRGLDIKGVS 453
Query: 494 HVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
V+ D + ++HRVGRTAR G G SL ES
Sbjct: 454 TVVNFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDESK 491
>gi|428162365|gb|EKX31518.1| hypothetical protein GUITHDRAFT_122295 [Guillardia theta CCMP2712]
Length = 411
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 108/194 (55%), Gaps = 9/194 (4%)
Query: 352 QYIFVAATLP-INGKKTAGAV--LKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
Q IF AATLP G K V L+ +FPDA I+ LH + ++ +W+EV + +
Sbjct: 177 QVIFAAATLPDWKGDKVKSIVRTLRLLFPDAVHINTMGLHRQSLAVETEWVEVEDEEESL 236
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
L+ V ++ + +TMVF NT+ + L G E + HK++ RA+ L
Sbjct: 237 PLLLDVLDK----SRGVKTMVFCNTIASAKDTHAFLLEHGWEAHMIHKEVPPAVRAEALN 292
Query: 469 NFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ-YGLVTSL 526
+ K + VCTD AARGID PNV HVIQ FA +AV +LHR+GRTARAG +G T+
Sbjct: 293 LLRVKSDALVVCTDIAARGIDAPNVGHVIQLQFAPNAVTYLHRIGRTARAGSLHGKATNF 352
Query: 527 YTESNRDLVDTIRR 540
S+RD+ IR+
Sbjct: 353 IDPSSRDVATAIRK 366
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 44/188 (23%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
++ ++++ GL LI+A+ GF RP+ +Q ++ +L GK+ VI AETGSGKT +YL+P
Sbjct: 4 EDASFEATGLDQDLIKAVRACGFERPTRIQEEAIPAILRGKNTVIGAETGSGKTLAYLLP 63
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++++ + +E +D P P +LVL PN L QV M LS
Sbjct: 64 VMQRMLKQM--AEEGTTDFGPNP---RALVLVPNQELAMQVALMMQRLSRTQ-------- 110
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
+ +P E + VK +V DEADML+ G F++
Sbjct: 111 ---------LAQP----------------------EMLDQVKALVVDEADMLMQGGFEDD 139
Query: 262 VIRLINMF 269
V ++++
Sbjct: 140 VRKILDYL 147
>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
Length = 692
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 179/458 (39%), Gaps = 116/458 (25%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
L+ + S F +P+ VQ SV V + +D++ A+TGSGKT +L P++ + C G +
Sbjct: 235 LVENITLSRFTKPTPVQKYSVPIVCNKRDLMACAQTGSGKTGGFLFPVLSE-CFMSGPA- 292
Query: 155 NSNSDKEPTPPRAPS--------LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
+P P A S L++ P L Q+ A + VR GG
Sbjct: 293 -----PQPEPTGAFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRS---WVRPAVAYGG 344
Query: 207 QGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
IG+ D++V+ P L + ++ R R+ VKY+V DEAD
Sbjct: 345 VD--IGQQIRTLQRGCDLLVAAPGRLTDLLE---RGRVSLC-NVKYLVLDEAD------- 391
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
RM + G E + PD+QD
Sbjct: 392 -------------------RMLDMGFEPQIRHIVQECDMPDVQD---------------- 416
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
+Q + +AT P N + A LK D
Sbjct: 417 --------------------------------RQTLMFSATFPRNIQMLARDFLK----D 440
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
++S + + + +K + V D + +++ + A+ T+VF T
Sbjct: 441 YVFLSVGRVGSTSANITQKVLLVEDDEKRSVILDLLS-----AADNGLTIVFTETKRMAD 495
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQ 497
+ L G H + + ER K L F+ + V T AARG+DIPNVSHVI
Sbjct: 496 YLADFLYDQGFPATAIHGNRTQYEREKALAAFKNGTAPILVATAVAARGLDIPNVSHVIN 555
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
D + D++HR+GRT RAG G+ TS + +N+++V
Sbjct: 556 YDLPSDIDDYVHRIGRTGRAGNTGIATSFFNRNNKNIV 593
>gi|281202418|gb|EFA76621.1| ATP-dependent RNA helicase [Polysphondylium pallidum PN500]
Length = 637
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 16/234 (6%)
Query: 318 EGDS---DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQY--IFVAATLPINGKKTAGAVL 372
E DS D +G E+ K + ++R + KN K + +ATL + + +
Sbjct: 399 EADSMFTDGKGFDEDMKK-ILTPIEYRLMNKNIPDYKNIYSVICSATLT----QQLMSTI 453
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432
K +FP IS Y+H L++++I V + +AL+ +V +++ + ++F N
Sbjct: 454 KSLFPSISKISTPYIHKSLNTLEQQFITVKGGDKHEALLRSVTP-----SKSKKILIFCN 508
Query: 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPN 491
+ D+ + L G H D+ R F + + VCTD A+RGIDI +
Sbjct: 509 SPDSCRSTEHFLNENGFSVTSLHGDIPSRLRQSNWKEFSMGEKQILVCTDIASRGIDIKS 568
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
V HVI DF ++ +D+LHR+GRTARAGQ G+VTS+ + + L + I+ A K G
Sbjct: 569 VEHVILFDFPSNPIDYLHRIGRTARAGQRGVVTSIIGKKDLVLSNAIQEALKRG 622
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIE 144
+ LGL L+++L PS +Q ++ +LS K DV+ ++TG+GKT SYL+P+ +
Sbjct: 199 FARLGLVPTLVQSLREMNITIPSTIQQLAIPEILSKKSDVLFVSQTGTGKTLSYLLPVFQ 258
Query: 145 KLCTA---------------------------------LG-DSENSNSD-KEPTPPRAPS 169
L + G D E S S KE P R +
Sbjct: 259 NLKQSEQREQTELEAQQADKQKQLEQQLRDKGIDDPSRFGIDIEASLSQAKERMPARPRA 318
Query: 170 LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW---------PIGKPDVIVST 220
++L P L +QV ++ + A + + +A GG+ PI D++VST
Sbjct: 319 IILVPTRELVKQVSQVTKQI-AHHHKLSCTGIARGGGENAKHLKDFKERPI---DIVVST 374
Query: 221 PAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
P L+ I+ K+ F ++Y+V DEAD +
Sbjct: 375 PGVLIQLIENKQI----FFGYLEYLVVDEADSMF 404
>gi|387592408|gb|EIJ87432.1| DEAD box polypeptide 23 [Nematocida parisii ERTm3]
gi|387596892|gb|EIJ94512.1| DEAD box polypeptide 23 [Nematocida parisii ERTm1]
Length = 542
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 114/481 (23%), Positives = 211/481 (43%), Gaps = 65/481 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++K ++ +++ +E + PSIVQ V + GKD++I+A TG GKT S+LVP I
Sbjct: 40 TSFKGQLITQKILENMEKNNITTPSIVQKYVVPLGMHGKDLLISAPTGMGKTISFLVPTI 99
Query: 144 EKL--CTALGDSENSNSDK----EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
L A +D+ + + +LVL P L Q+ A LS G +
Sbjct: 100 NFLNSVNATERKVRGYADRGSLFKSSRKTVSALVLAPTRELAMQIHAEACILS--EGMSI 157
Query: 198 VRAVAVCG----GQGWPIGKP-DVIVSTPAAL----LNNIDPKRRRRMEFVRGVKYVVFD 248
A G GQ + K D+++ TP + + P ++ V+ ++FD
Sbjct: 158 SSACIYGGVEKKGQASSLSKGVDLLIGTPGRIQDFVFDQYHPLN------LKNVQVLIFD 211
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
EAD +L F+ Q+ ++ ++++ + M S+ P +Q L
Sbjct: 212 EADRMLDMGFEKQIRSILGALSPNKRRQTMMF------------SATFPPAVQ---RLAK 256
Query: 309 EYISD--EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKK 366
E+ + E G+ +E +T+E I++ + R+ ++N + K L G K
Sbjct: 257 EFFQNTPEEVHVGNGPIESITQEIIY--IEEPNKRQAKRNEKLMK-------ILLEYGYK 307
Query: 367 TAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSR 426
+ A+ K+ F A + P L+ W + DT + ++ ++ + G E +
Sbjct: 308 PSAAIEKKAFVQAKYTV--------PVLQ--WGDKHKDTS-KKVHDSPGQKGD-GYELPK 355
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARG 486
++F D ++ L GI C H D + ER L F+ + + T AARG
Sbjct: 356 IVIFVEKKDDCAVLSDYLHGNGINCTTLHGDKTQMEREHALKEFKGDVPILIATSIAARG 415
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAA 542
+D+P ++ V+ +++HR+GRT RAG+ G + + + L++ +++A
Sbjct: 416 LDVPGIALVLNYMMPNDVKEYIHRIGRTGRAGKTGRSITFFARDDHAQAAPLIEILKKAK 475
Query: 543 K 543
+
Sbjct: 476 Q 476
>gi|134034078|sp|Q0CF43.2|DBP7_ASPTN RecName: Full=ATP-dependent RNA helicase dbp7
Length = 769
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 210/474 (44%), Gaps = 76/474 (16%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L + D I AETGSGKT +YL+PL
Sbjct: 143 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASISQLLKEESDAFIQAETGSGKTLAYLLPL 202
Query: 143 IEKLCTALGDSEN-------SNSDKEPTPPRAPSL---VLCPNVVLCEQVVRMANALSAD 192
++++ AL N ++++ +P R L VL P LC+Q+ + L
Sbjct: 203 VQRIM-ALSHPTNRTDATSTTDAEGQPVVHRDSGLFAIVLAPTRELCKQISVVLEGLL-- 259
Query: 193 NGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+ A V GG+ K +++V+TP L ++++ + V V+++V
Sbjct: 260 RCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWLV 316
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKP-------LEMDNSSLTQP 298
DE D L+ F+ ++ +I + D +Q SR+ ++ L+M+ L +
Sbjct: 317 LDEGDRLMELGFEQELQGIIK--KLDARQRPSRIPGVPTKRTTILCSATLKMNVQKLGEM 374
Query: 299 DLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA 358
L+D +++ + ++G+ + +D E + T +K+ Y VAA
Sbjct: 375 SLKDAIHIKADPADEDGDAKPKNDDE--SAFTVPAQLKQ--------------SYAIVAA 418
Query: 359 TLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERL 418
L + T A LK+ F + + + V+ VD E +L
Sbjct: 419 KLRL---VTLTAFLKRTF------------MRKGSVMKAIVFVSCADSVDFHFEVFTRKL 463
Query: 419 EFGAETSRTMVFANTVD--AVYAVTKILKTAG-------IECYCYHKDLSLEERAKTLVN 469
+ E + ++T + A + I + + + H L R TL +
Sbjct: 464 QDSDENAEDSDASDTKEKPAAFTHNTIARATAFSNPSNPVTLHRLHGSLPQHVRTSTLAS 523
Query: 470 F--QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
F + V VCTD A+RG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 524 FARNKDASVLVCTDVASRGLDLPNVDLVIEYDPAFSAEDHLHRIGRTARLGRDG 577
>gi|66812546|ref|XP_640452.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
gi|74997024|sp|Q54TD7.1|DDX24_DICDI RecName: Full=ATP-dependent RNA helicase ddx24; AltName: Full=DEAD
box protein 24
gi|60468476|gb|EAL66480.1| hypothetical protein DDB_G0281841 [Dictyostelium discoideum AX4]
Length = 940
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 226/507 (44%), Gaps = 78/507 (15%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL--SGKDVVIAAETGSGKTHSYL 139
D W S L +++ L + GF +P+ +Q+ SV PV SG DV+ AA+TGSGKT ++
Sbjct: 292 DMSEWNSYNLDPLILKGLRSLGFSKPTEIQS-SVIPVAVSSGYDVIGAAQTGSGKTLAFG 350
Query: 140 VPLIEKLCTAL---GDSENSNSDKEPTPPRAP------------------------SLVL 172
+P+++++ L G + + ++K+ SLV+
Sbjct: 351 IPMVQRILQHLRKHGQNVENKANKQQNDNDDENEDVEEEEEEEEEEGRSKEYRKLFSLVI 410
Query: 173 CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLN 226
CP L QV ++ + ++ +++ GG Q +P+++V+TP L
Sbjct: 411 CPTRELAIQVTNHIKSIISHTN---LKVISIVGGMASQRQQRVLSKRPEIVVATPGRLWE 467
Query: 227 NIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEK 286
I G +++V E + LLC ++ R++ F E + S + + +
Sbjct: 468 LI----------TEGHQHLV--ELESLLCLGI-DEADRMVEQGHFAELE-SILKTLPIHR 513
Query: 287 PLEMDNSSLTQPDLQDEENLQD--EYISDEGNF-EGDSD-VEGLTEETKSGSIKKKDWRR 342
L + + +++ N + + ++D+G +GD D ++ + + +++++
Sbjct: 514 TAMSKKERLKKKETEEKRNKRRKVDKLNDKGEMIKGDQDDMDDQIPDEEMEELEQEEQNH 573
Query: 343 VRKNYQRSKQYIFVAA--TLPINGKKTA-GAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
+ ++R + ++F A +P +G T+ +++ P + I + F K I
Sbjct: 574 LTTTHKR-QTFVFSATLVNIPGDGAPTSQKKKYRKLTPIENLIEK--VRFQRDY---KLI 627
Query: 400 EVT---------VDTQVDALIEAVKERLEFGAET--SRTMVFANTVDAVYAVTKILKTAG 448
+VT ++T++ +E L + E RT+VF N++D + I
Sbjct: 628 DVTQKRLTAKNLLETKIFCNLEEKDMYLYYFVERYPGRTLVFVNSIDCARRLIPIFNILE 687
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKGGV-FVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
+ + H + ++R K L F+ V + TD AARG+DIP V HVI + +
Sbjct: 688 VPVFALHAQMQQKQRLKNLDRFRTLDNVVLIATDVAARGLDIPLVQHVIHYQVPRTTQLY 747
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDL 534
+HR GRTAR+ Q G+ L T R L
Sbjct: 748 IHRSGRTARSDQDGISVVLVTPKERPL 774
>gi|412986711|emb|CCO15137.1| predicted protein [Bathycoccus prasinos]
Length = 597
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/503 (25%), Positives = 205/503 (40%), Gaps = 82/503 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL------------------SGKDVVIA 127
+ LG+ +++ L N+G +PS+ Q A++ ++ S + +
Sbjct: 112 FADLGVPKQIVDLLRNAGIEKPSVAQLAALPELIDLRKLGGEGEEDAKAWSVSMPSIAMQ 171
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSE-----NSNSDKEPTPPRAPSLVLCPNVVLCEQV 182
+ TGSGKT +YL+P+ C L + E + N + RA +++ P+ L Q+
Sbjct: 172 SHTGSGKTLAYLIPI---FCDILREEEAMEKMDRNQKRHVNDVRA--MIVAPSQELAMQI 226
Query: 183 VRMANALSADNGEPLVRAVAVCGG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRR 235
VR + G+ + + + GG +G +P ++V TP I R
Sbjct: 227 VRTIETVLGPYGKDITQQL--IGGANARRQEEGLRKKRPFIVVGTPG----RIAEMSRMG 280
Query: 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR-MNESGVEKPLEMDNSS 294
+ GV +V DEAD LL +F+ + R+ K R + S K MD +
Sbjct: 281 VLKTHGVSTLVIDEADDLLASNFRRDMARINEHCGKGAKGGRRTIICSATLKKETMDAYA 340
Query: 295 LTQPDLQ-----DEENLQDEYISDEG-NFEGDSDVEGLTEETKSGSIKKKDW----RRVR 344
PDL+ E N E D+ N D EG EE ++ + + R
Sbjct: 341 YVAPDLKLVLADYEMNKPVESADDDDINKTKDDGKEGTKEENIDDGKEEGEEEDIVEKAR 400
Query: 345 KNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD 404
+ Q KQ + A + + GAV P P L+ +I+ ++
Sbjct: 401 REAQMKKQVMINAEEQQVMNR---GAV---ALP--------------PHLQHLFIQADLN 440
Query: 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERA 464
+VD L AV + R ++F N V L G+ H D+ +R
Sbjct: 441 RKVDVLRRAV-----HAMDVQRCLIFVNFGRRSKDVEGKLSARGMPVASLHGDMDKIQRE 495
Query: 465 KTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+ L F+ G V + +D AARG+DIPN V + T V ++HR GRT R G G+
Sbjct: 496 RVLKKFKS-GEVRALLVSDLAARGLDIPNCDCVFNLELPTDEVHYVHRAGRTGRMGAPGV 554
Query: 523 VTSLYTESNRDLVDTIRRAAKLG 545
V S+ + ++D A KLG
Sbjct: 555 VVSISEQKENFVLDKF--AQKLG 575
>gi|242076434|ref|XP_002448153.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
gi|241939336|gb|EES12481.1| hypothetical protein SORBIDRAFT_06g022240 [Sorghum bicolor]
Length = 807
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 209/466 (44%), Gaps = 56/466 (12%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASV-GPVLSGKDVVIAAETGSGKTHSYL 139
DD W+ L L L++A+ GF P+ +Q + GKDV+ AAETGSGKT ++
Sbjct: 210 DDVSEWRELRLHPLLLKAMRRLGFKEPTPIQKSCFPAAAHQGKDVIGAAETGSGKTLAFG 269
Query: 140 VPLIEKLC-----TALGDSENSNSDKEP--TPPRAPSLVLCPNVVLCEQV---VRMANAL 189
+P++++L A E D+ +P RA L+L P L +QV ++ A
Sbjct: 270 LPILQRLLEEREKAARLHQEGDKMDERSGGSPLRA--LILTPTRELAKQVCDHLKDAAKF 327
Query: 190 SADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
+ P+V +++ + KP+++V TP L ++ + +E + + + V DE
Sbjct: 328 LGIHVVPIVGGLSMEKQERLLKKKPEIVVGTPGRLWEHMSMNNQHLVE-LHSLSFFVLDE 386
Query: 250 ADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
AD ++ ++ +I M L N S + S+ T P+ + NLQ
Sbjct: 387 ADRMIERGHFRELQSIIEM-------LPLTNGSD-------EQSAKTMPNCETVPNLQ-- 430
Query: 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAG 369
I F + + S + +KK +++ SK A+ P + +
Sbjct: 431 -IKKRQTFVFSATL------ALSSNFRKK----LKRGLSTSK------ASTP-DDVSSIE 472
Query: 370 AVLKQ--MFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRT 427
A+ KQ M P+A+ + +L+E +IE + + + DA + + L + RT
Sbjct: 473 ALSKQAGMKPNAEIVDLTKASILPEKLEESFIECSEEDK-DAYLYYI---LSVHGQ-GRT 527
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARG 486
++F ++ A+ ++ IL+ GI H + R K + F+ + + V TD ARG
Sbjct: 528 IIFCTSIAALRHISSILRILGINVLTNHAQMQQRARMKAVDRFRGSENSILVATDGFARG 587
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+D +V VI S ++HR GRTAR G +L + +++
Sbjct: 588 MDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSLAGCSIALISPTDK 633
>gi|115401448|ref|XP_001216312.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190253|gb|EAU31953.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1053
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/475 (26%), Positives = 214/475 (45%), Gaps = 78/475 (16%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L + D I AETGSGKT +YL+PL
Sbjct: 143 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASISQLLKEESDAFIQAETGSGKTLAYLLPL 202
Query: 143 IEKLCTALGDSEN-------SNSDKEPTPPRAPSL---VLCPNVVLCEQV-VRMANALSA 191
++++ AL N ++++ +P R L VL P LC+Q+ V + L
Sbjct: 203 VQRIM-ALSHPTNRTDATSTTDAEGQPVVHRDSGLFAIVLAPTRELCKQISVVLEGLLRC 261
Query: 192 DNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+ + A V GG+ K +++V+TP L ++++ + V V+++
Sbjct: 262 AH---WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWL 315
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKP-------LEMDNSSLTQ 297
V DE D L+ F+ ++ +I + D +Q SR+ ++ L+M+ L +
Sbjct: 316 VLDEGDRLMELGFEQELQGIIK--KLDARQRPSRIPGVPTKRTTILCSATLKMNVQKLGE 373
Query: 298 PDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVA 357
L+D +++ + ++G+ + +D E + T +K+ Y VA
Sbjct: 374 MSLKDAIHIKADPADEDGDAKPKNDDE--SAFTVPAQLKQ--------------SYAIVA 417
Query: 358 ATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKER 417
A L + T A LK+ F G+ + + + V+ VD E +
Sbjct: 418 AKLRL---VTLTAFLKRTF----MRKGSVM--------KAIVFVSCADSVDFHFEVFTRK 462
Query: 418 LEFGAETSRTMVFANTVD--AVYAVTKILKTAG-------IECYCYHKDLSLEERAKTLV 468
L+ E + ++T + A + I + + + H L R TL
Sbjct: 463 LQDSDENAEDSDASDTKEKPAAFTHNTIARATAFSNPSNPVTLHRLHGSLPQHVRTSTLA 522
Query: 469 NF--QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
+F + V VCTD A+RG+D+PNV VI+ D A SA D LHR+GRTAR G+ G
Sbjct: 523 SFARNKDASVLVCTDVASRGLDLPNVDLVIEYDPAFSAEDHLHRIGRTARLGRDG 577
>gi|391872976|gb|EIT82051.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 760
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 213/476 (44%), Gaps = 81/476 (17%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L D I AETGSGKT +YL+PL
Sbjct: 138 TFTNLGLSPSLAAHLLTKLELKAPTGIQKASMSQLLKEDSDAFIQAETGSGKTLAYLLPL 197
Query: 143 IEKLCTALGDSEN--SNSDKEPTPPRAPSL---VLCPNVVLCEQV-VRMANALSADNGEP 196
++++ T + + +N +NS EP R L VL P LC+Q+ V + + L +
Sbjct: 198 VQRIMT-VSNPKNMSTNSKGEPIVHRDSGLFAIVLAPTRELCKQISVVLESLLRCAH--- 253
Query: 197 LVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
+ A V GG+ K +++V+TP L ++++ + V V+++V DE
Sbjct: 254 WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWLVLDEG 310
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKP-------LEMDNSSLTQPDLQD 302
D L+ F+ ++ +I + D +Q SR+ ++ L+M+ L + L+D
Sbjct: 311 DRLMELGFEKELQGIIQ--KLDARQRPSRIPGIPTKRTTILCSATLKMNVQKLGEISLKD 368
Query: 303 EENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPI 362
+++ +D + +GD+ K+KD R Q + Y VAA L +
Sbjct: 369 AVHIK----ADPADEDGDT--------------KRKDDDGFRVPAQLKQSYAIVAAKLRL 410
Query: 363 NGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF-- 420
T A LK+ F + + + V+ VD E R ++
Sbjct: 411 ---VTLTAYLKRTF------------MRKGSVMKAIVFVSCADSVDFHFEVFSRRKQYRD 455
Query: 421 ------------GAETSRTMVFANTVDAVY-AVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ S+T A+ + AV + ++ + H L R TL
Sbjct: 456 ESEDEDEEKEDDDEDNSKTKSEASPHGTIAPAVAFSNPSNPVKLHKLHGSLPQHVRTATL 515
Query: 468 VNF--QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
F + + V VCTD A+RG+D+PNV VI+ D A SA D HR+GRTAR G+ G
Sbjct: 516 NAFSREREPSVLVCTDVASRGLDLPNVDLVIEYDPAFSADDHTHRIGRTARLGRDG 571
>gi|336383448|gb|EGO24597.1| hypothetical protein SERLADRAFT_449372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 487
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 107/458 (23%), Positives = 178/458 (38%), Gaps = 101/458 (22%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G + ++ ++ GF P+ +Q + LSG+DVV A+TGSGKT S+ +P + +
Sbjct: 67 GFPEYIMSSILAQGFSSPTPIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAMLHI--- 123
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
N+ P P +LVL P L Q+ + + + +R A+ GG
Sbjct: 124 -------NAQPLLAPGDGPIALVLAPTRELAVQIQQECTKFGSSS---RIRNTAIYGGA- 172
Query: 209 WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
PK + + RGV+ V+ ++ Q +R I
Sbjct: 173 ---------------------PKGPQIRDLQRGVEVVIATPGRLIDMLETQKTNLRRITY 211
Query: 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328
DE RM + G E +
Sbjct: 212 LVMDEA--DRMLDMGFEPQI---------------------------------------- 229
Query: 329 ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388
R++ + +Q + +AT P + +K A LK M + S
Sbjct: 230 ------------RKIVSQIRPDRQTLMFSATWPKDVQKLANDFLKDMI-QVNIGSMELTA 276
Query: 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
HN ++ +EV D + A + +K + AE ++ ++F T +TK L+ G
Sbjct: 277 NHN---IQQIVEVCSDFEKRAKL--IKHLDQISAENAKVLIFVGTKRVADDITKYLRQDG 331
Query: 449 IECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D ER L F+ + + + TD A+RG+D+ +V +VI DF + D+
Sbjct: 332 WPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPNNCEDY 391
Query: 508 LHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
+HR+GRT RAG G + +T N R+L+ +R A
Sbjct: 392 IHRIGRTGRAGMKGTSYTYFTTDNAKSARELIGILREA 429
>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 498
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/464 (22%), Positives = 183/464 (39%), Gaps = 101/464 (21%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V++ +G + L+ ++ GF P+ +Q + L+G+DVV A+TGSGKT S+ +P +
Sbjct: 61 VSFDQVGFPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAM 120
Query: 144 EKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ N+ P P +LVL P L Q+ + +++ +R A
Sbjct: 121 LHI----------NAQPLLAPGDGPIALVLAPTRELAVQIQQECTKFGSNS---RIRNTA 167
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+ GG PK + + RGV+ V+ ++ Q
Sbjct: 168 IYGGA----------------------PKGPQIRDLQRGVEIVIATPGRLIDMLETQKTN 205
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322
+R + DE RM + G E +
Sbjct: 206 LRRVTYLVMDEA--DRMLDMGFEPQI---------------------------------- 229
Query: 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382
R++ + +Q + +AT P + +K A L+ M +
Sbjct: 230 ------------------RKIVSQIRPDRQTLMFSATWPKDVQKLANDFLRDMI-QVNIG 270
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
S HN ++ +EV D + + +K + AE ++ ++F T +TK
Sbjct: 271 SMELTANHN---IQQIVEVCSD--FEKRNKLIKHLDQISAENAKVLIFVATKRVADDITK 325
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFA 501
L+ G H D ER L F+ + + + TD A+RG+D+ +V +VI DF
Sbjct: 326 YLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFP 385
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
+ D++HR+GRT RAG G+ + +T N R+L+ +R A
Sbjct: 386 NNCEDYIHRIGRTGRAGMKGISYTYFTTDNAKSARELIGILREA 429
>gi|389749883|gb|EIM91054.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 487
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 105/463 (22%), Positives = 184/463 (39%), Gaps = 101/463 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ +G + L+ +++ GF P+ +Q + LSG+DVV A+TGSGKT S+ +P +
Sbjct: 62 SFEEVGFPEYLMTSIKAQGFPAPTSIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAML 121
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ +P P +LVL P L Q+ + +++ +R A+
Sbjct: 122 HI----------NAQPLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNS---RIRNTAI 168
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG PK + + RGV+ V+ ++ Q +
Sbjct: 169 YGGA----------------------PKGPQIRDLQRGVEIVIATPGRLIDMLETQKTNL 206
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
R + DE RM + G E +
Sbjct: 207 RRVTYLVLDEA--DRMLDMGFEPQI----------------------------------- 229
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
R++ + +Q + +AT P + +K A LK M + S
Sbjct: 230 -----------------RKIIGQIRPDRQTLMFSATWPKDVQKLAADFLKDMI-QCNIGS 271
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
HN + + +E+ D + + +K + AE ++ ++F T +TK
Sbjct: 272 MELTANHNIK---QIVEICSDFEKRGKL--IKHLDQISAENAKVLIFVGTKRVADDITKY 326
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
L+ G H D ER L F+ + + + TD A+RG+D+ +V +VI DF
Sbjct: 327 LRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPN 386
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
+ D++HR+GRT RAG G + +T N RDL+ ++ A
Sbjct: 387 NCEDYIHRIGRTGRAGLKGTSFTYFTTDNAKSARDLLAILKEA 429
>gi|238495987|ref|XP_002379229.1| ATP dependent RNA helicase (Dbp7), putative [Aspergillus flavus
NRRL3357]
gi|220694109|gb|EED50453.1| ATP dependent RNA helicase (Dbp7), putative [Aspergillus flavus
NRRL3357]
Length = 760
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 129/469 (27%), Positives = 210/469 (44%), Gaps = 67/469 (14%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L D I AETGSGKT +YL+PL
Sbjct: 138 TFTNLGLSPSLAAHLLTKLELKAPTGIQKASMSQLLKEDSDAFIQAETGSGKTLAYLLPL 197
Query: 143 IEKLCTALGDSEN--SNSDKEPTPPRAPSL---VLCPNVVLCEQV-VRMANALSADNGEP 196
++++ T + + +N +NS EP R L VL P LC+Q+ V + + L +
Sbjct: 198 VQRIMT-VSNPKNMSTNSKGEPIVHRDSGLFAIVLAPTRELCKQISVVLESLLRCAH--- 253
Query: 197 LVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
+ A V GG+ K +++V+TP L ++++ + V V+++V DE
Sbjct: 254 WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWLVLDEG 310
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
D L+ F+ ++ +I + D +Q SR+ ++ + +++L + + L +
Sbjct: 311 DRLMELGFEKELQGIIQ--KLDARQRPSRIPGIPTKRTTILCSATLKM----NVQKLGEI 364
Query: 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAG 369
+ D + + D E G K+KD R Q + Y VAA L + T
Sbjct: 365 SLKDAVHIKADPADE-------DGETKRKDDDGFRVPAQLKQSYAIVAAKLRL---VTLT 414
Query: 370 AVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF--------- 420
A LK+ F + + + V+ VD E R ++
Sbjct: 415 AYLKRTF------------MRKGSVMKAIVFVSCADSVDFHFEVFSRRKQYRDESGDEDE 462
Query: 421 -----GAETSRTMVFANTVDAVY-AVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QE 472
+ S+T A+ + AV + ++ + H L R TL F +
Sbjct: 463 EKEDDDEDNSKTKSEASPHGTIAPAVAFSNPSNPVKLHKLHGSLPQHVRTATLNAFSRER 522
Query: 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
+ V VCTD A+RG+D+PNV VI+ D A SA D HR+GRTAR G+ G
Sbjct: 523 EPSVLVCTDVASRGLDLPNVDLVIEYDPAFSADDHTHRIGRTARLGRDG 571
>gi|169775367|ref|XP_001822151.1| ATP-dependent RNA helicase dbp7 [Aspergillus oryzae RIB40]
gi|91206549|sp|Q2UE66.1|DBP7_ASPOR RecName: Full=ATP-dependent RNA helicase dbp7
gi|83770014|dbj|BAE60149.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 760
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 129/469 (27%), Positives = 210/469 (44%), Gaps = 67/469 (14%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L D I AETGSGKT +YL+PL
Sbjct: 138 TFTNLGLSPSLAAHLLTKLELKAPTGIQKASMSQLLKEDSDAFIQAETGSGKTLAYLLPL 197
Query: 143 IEKLCTALGDSEN--SNSDKEPTPPRAPSL---VLCPNVVLCEQV-VRMANALSADNGEP 196
++++ T + + +N +NS EP R L VL P LC+Q+ V + + L +
Sbjct: 198 VQRIMT-VSNPKNMSTNSKGEPIVHRDSGLFAIVLAPTRELCKQISVVLESLLRCAH--- 253
Query: 197 LVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
+ A V GG+ K +++V+TP L ++++ + V V+++V DE
Sbjct: 254 WIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWLVLDEG 310
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
D L+ F+ ++ +I + D +Q SR+ ++ + +++L + + L +
Sbjct: 311 DRLMELGFEKELQGIIQ--KLDARQRPSRIPGIPTKRTTILCSATLKM----NVQKLGEI 364
Query: 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAG 369
+ D + + D E G K+KD R Q + Y VAA L + T
Sbjct: 365 SLKDAVHIKADPADE-------DGETKRKDDDGFRVPAQLKQSYAIVAAKLRL---VTLT 414
Query: 370 AVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF--------- 420
A LK+ F + + + V+ VD E R ++
Sbjct: 415 AYLKRTF------------MRKGSVMKAIVFVSCADSVDFHFEVFSRRKQYRDESEDEDE 462
Query: 421 -----GAETSRTMVFANTVDAVY-AVTKILKTAGIECYCYHKDLSLEERAKTLVNF--QE 472
+ S+T A+ + AV + ++ + H L R TL F +
Sbjct: 463 EKEDDDEDNSKTKSEASPHGTIAPAVAFSNPSNPVKLHKLHGSLPQHVRTATLNAFSRER 522
Query: 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
+ V VCTD A+RG+D+PNV VI+ D A SA D HR+GRTAR G+ G
Sbjct: 523 EPSVLVCTDVASRGLDLPNVDLVIEYDPAFSADDHTHRIGRTARLGRDG 571
>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
Length = 412
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 16/198 (8%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+ +Q + +ATLP ++ A L ++ D I+G+ ++++ IEV +
Sbjct: 180 KKRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGD-------NIEQRVIEVDANL 232
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ L + K+ + T++F ++ + + + LK AGI+ +H DL+ +ER K
Sbjct: 233 RRQVLQKLFKDE-----QWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIK 287
Query: 466 TLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
L FQ K + + TD AARGIDI +SHVI D S +D++HR+GRT RAGQ G+
Sbjct: 288 VLKRFQNKDFPILIATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAI 347
Query: 525 SLYTESNRDLVDTIRRAA 542
S + D TI++ A
Sbjct: 348 SFINPATEDHFKTIQKQA 365
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 93/193 (48%), Gaps = 28/193 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++ L D L RA++N F + +QA ++ + GKD++ ++TG+GKT ++ PLI
Sbjct: 1 MSFEQLNFPDYLSRAVDNLNFSEATDIQAKAIPLIQEGKDLLAESQTGTGKTLAFSFPLI 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS-----LVLCPNVVLCEQVVRMANALSADNGEPLV 198
E++ T PP+ LVL P L QV + + + P+
Sbjct: 61 ERINT--------------LPPKKKKISILGLVLVPTRELALQVEKAFTNYAEFSLRPIK 106
Query: 199 RAVAVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
A + G GQ + DV+++TP ++ I+ R +E ++ ++ DEAD +
Sbjct: 107 TATLIGGENIDGQIRKLRMGLDVLIATPGRIIELINLGEVRLVE----LEMLILDEADKM 162
Query: 254 LCGSFQNQVIRLI 266
L F +++ L+
Sbjct: 163 LDLGFADELKELL 175
>gi|219122436|ref|XP_002181551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406827|gb|EEC46765.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 603
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 178/467 (38%), Gaps = 110/467 (23%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+++ G S+ + + +G RPS +Q+ + + G ++A +TGSGKT +YL+PL
Sbjct: 147 YQTKGASETFAQLCQGAGIARPSKIQSLAWPILCKGSHTIVADQTGSGKTLAYLIPL--- 203
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ AL N +P
Sbjct: 204 ---------------------------------------LTRALEDRNAQP--------A 216
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
G P G P +IV P A L + + R + V F + G + +
Sbjct: 217 GTAVPNGSPRIIVLAPTAELAD-----QIRAVCEQMTASVSFSTLVITATGKYSTSIRDQ 271
Query: 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325
I M + + + L NS L LQ + DE + D G
Sbjct: 272 IRMLQRQPVDVLISTPGRIATILRTRNSGLDLSALQ-------SIVLDEVDVLLVDDTFG 324
Query: 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN 385
T G+ D Q++FV ATLP T +++ F I G
Sbjct: 325 PQLRT-VGAAAPLD----------RTQFVFVTATLP----DTVVETVEKEFRGVQLIKGP 369
Query: 386 YLHFHNPRLKEKWIEVTV------------DTQVDALIEAVKERLEFGAETSRTMVFANT 433
LH P ++E+ ++V+V D + L++A+++ RT+VF NT
Sbjct: 370 GLHRVAPTVQERLVDVSVPSQNNRDAKLCFDVKAKQLLKALRQ-----TRCRRTLVFCNT 424
Query: 434 VDAVYAVTKILKTAG-----IECYCYHKDLSLEERAKTLVNF---------QEKGGVFVC 479
V++ +V +LK E YH ++ E R + L F ++ V VC
Sbjct: 425 VESCRSVENLLKRKDRKGNVFEVRAYHNAMTPENRNENLAVFSHGIRTTQPEKVDYVLVC 484
Query: 480 TDAAARGIDIPN--VSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524
TD AARG+D V HV+ DF +++ RVGRTARAG+ G T
Sbjct: 485 TDRAARGVDFERAPVDHVVLFDFPKDPAEYVRRVGRTARAGRTGTST 531
>gi|195165539|ref|XP_002023596.1| GL19832 [Drosophila persimilis]
gi|194105730|gb|EDW27773.1| GL19832 [Drosophila persimilis]
Length = 917
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 132/485 (27%), Positives = 208/485 (42%), Gaps = 86/485 (17%)
Query: 76 DTFFADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
+T FA V SLGL ++ LE+ + VQ ++ VLSGKDV++ ++TGSGK
Sbjct: 254 ETIFAGSKVA--SLGLHAHAVKNLEDLLSITELTTVQQKTIPHVLSGKDVLVRSQTGSGK 311
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194
T +Y +PL+EKL + + ++ +L++ P L Q + L
Sbjct: 312 TLAYALPLVEKLQGQVPHIKRTDG--------VVALIIVPTRELVVQTYELFQKLV---- 359
Query: 195 EPLVRAV--AVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+P V ++ GG+ K +V+V TP L++++ + R ++++V
Sbjct: 360 KPYTWIVPGSLLGGESRKSEKARLRKGINVLVGTPGRLVDHL--LHTASFKLFR-LQFLV 416
Query: 247 FDEADMLLCGSFQ---NQVIRLINMFRF-----DEK--QLSRMNESG------------- 283
DEAD LL ++ Q++ I+ R DEK QL R+ S
Sbjct: 417 LDEADRLLELGYERDVKQLVEAIDKHRLEAQGQDEKLPQLQRLLLSATLTAQVQELAGLA 476
Query: 284 VEKPLEMDNS-SLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRR 342
+ PL +DNS L+ +E Q + I E E D D G +E +G +
Sbjct: 477 LSDPLYIDNSDEAASAALKSKEGYQKDSI--EAQLEPD-DGLGEYQEDVTGVLS------ 527
Query: 343 VRKNYQRSKQYIFVAATLPING-----KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+ +N S YI V A L + K A KQ + ++FH+ L E
Sbjct: 528 IPENLHLS--YIVVPAKLRLVALSSLLAKELAASPKQFKAIIFMSTTEMVNFHHDMLNEA 585
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+D E VK+ E E + T +L+ G+ + H
Sbjct: 586 LTRRVLDED----DEQVKDNDEDSDEQDTS-------------TPLLQ--GLRFFKLHGS 626
Query: 458 LSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
++ ER F++ V + TD RGID+P++ VIQ + DF+HRVGRTAR
Sbjct: 627 MTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVIQYTPPQTTADFVHRVGRTAR 686
Query: 517 AGQYG 521
AG+ G
Sbjct: 687 AGRKG 691
>gi|449542335|gb|EMD33314.1| hypothetical protein CERSUDRAFT_117934 [Ceriporiopsis subvermispora
B]
Length = 514
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 105/463 (22%), Positives = 181/463 (39%), Gaps = 101/463 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +G + ++ + GF P+ +Q + L+G+DVV A+TGSGKT S+ +P +
Sbjct: 97 SFDEIGFPEYIMSTIRAQGFPAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAML 156
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P +L+L P L Q+ + +++ +R A+
Sbjct: 157 HI----------NAQPLLAPGDGPIALILAPTRELAVQIQQECTKFGSNS---RIRNTAI 203
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG PK + + RGV+ V+ ++ Q +
Sbjct: 204 YGGA----------------------PKGPQIRDLQRGVEIVIATPGRLIDMLETQKTNL 241
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
R I DE RM + G E +
Sbjct: 242 RRITYLVMDEA--DRMLDMGFEPQI----------------------------------- 264
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
R++ + +Q + +AT P + +K A LK F + S
Sbjct: 265 -----------------RKIVSQIRPDRQTLMFSATWPKDVQKLANDFLKD-FIQVNIGS 306
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
HN ++ +EV D + A + +K + AE ++ ++F T +TK
Sbjct: 307 MELTANHN---IQQIVEVCSDFEKRAKL--IKHLEQISAENAKVLIFVGTKRVADDITKY 361
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
L+ G H D ER L F+ + + + TD A+RG+D+ +V +VI DF
Sbjct: 362 LRQDGWPALAIHGDKEQRERDWVLSEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPN 421
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
+ D++HR+GRT RAG G + +T N R+L+ +R A
Sbjct: 422 NCEDYIHRIGRTGRAGMKGTSYTYFTTDNAKQARELLAILREA 464
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q I V AT+ K ++ + F + + LH + +I++ + +++AL
Sbjct: 321 QTILVTATM----TKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDFIKLAGSENKLEAL 376
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ +R MVF NT+D+ AV L I YH ++ E+R + L F
Sbjct: 377 LQVLEPSL---AKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRVENLRKF 433
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G G VTSL
Sbjct: 434 KSDGDDCPTLVCTDLAARGLDL-DVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 492
Query: 528 TESNRDLVDTIRRAAK 543
+ + DL I A +
Sbjct: 493 AKKDLDLASKIEDALR 508
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGLS+ ++ A+ G P+ +Q+ + VL K VV+ + TGSGKT +YL+PL +
Sbjct: 130 SFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQ 189
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D + + +P PRA +VLCP L EQV R+A ++S R V
Sbjct: 190 LLRR---DEQLNGILLKPRRPRA--VVLCPTRELSEQVFRVAKSISH---HARFRCTMVS 241
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P DV+V TP +L +I+ V G +KY+V DEAD +
Sbjct: 242 GGGRLRPQEDSLNNPIDVVVGTPGRVLQHIE-----EGNMVYGDIKYLVLDEADTMFDRG 296
Query: 258 FQNQVIRLI 266
F + + I
Sbjct: 297 FGPDIRKFI 305
>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
stipitis CBS 6054]
gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family, partial
[Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 108/458 (23%), Positives = 179/458 (39%), Gaps = 108/458 (23%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC--- 147
L + L+ + S F +P+ VQ SV V G+D++ A+TGSGKT +L P++ +
Sbjct: 144 LDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYING 203
Query: 148 -TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
+ +S + S + P LV+ P L Q+ A + V+ V GG
Sbjct: 204 PAPIAESTGAFSSHKVHPT---ILVMAPTRELVSQIYDEAKKFAY---RSWVKPAVVYGG 257
Query: 207 QGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
IG+ D++V+TP L + ++ R R+ +KY+V D
Sbjct: 258 AD--IGQQIRNLDKGCDLLVATPGRLKDLLE---RGRVSLAN-IKYLVLD---------- 301
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
+ RM + G E + PD+QD
Sbjct: 302 ----------------EADRMLDMGFEPQIRHIVQECDMPDVQD---------------- 329
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
+Q + +AT P + + A LK D
Sbjct: 330 --------------------------------RQTLMFSATFPTDIQMLARDFLK----D 353
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
++S + + + +K + V + + L++ + + T++F T
Sbjct: 354 YIFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLS-----AGDAGLTIIFTETKRMAD 408
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQ 497
+ L G H D S ER K L F+ + V T AARG+DIPNV+HVI
Sbjct: 409 NLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVIN 468
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
D + D++HR+GRT RAG G+ T+ + +N+++V
Sbjct: 469 YDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVV 506
>gi|198468121|ref|XP_002133938.1| GA27288 [Drosophila pseudoobscura pseudoobscura]
gi|198146263|gb|EDY72565.1| GA27288 [Drosophila pseudoobscura pseudoobscura]
Length = 917
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 132/485 (27%), Positives = 208/485 (42%), Gaps = 86/485 (17%)
Query: 76 DTFFADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
+T FA V SLGL ++ LE+ + VQ ++ VLSGKDV++ ++TGSGK
Sbjct: 254 ETIFAGSKVA--SLGLHAHAVKNLEDLLSITELTTVQQKTIPHVLSGKDVLVRSQTGSGK 311
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194
T +Y +PL+EKL + + ++ +L++ P L Q + L
Sbjct: 312 TLAYALPLVEKLQGQVPHIKRTDG--------VVALIIVPTRELVVQTYELFQKLV---- 359
Query: 195 EPLVRAV--AVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+P V ++ GG+ K +V+V TP L++++ + R ++++V
Sbjct: 360 KPYTWIVPGSLLGGESRKSEKARLRKGINVLVGTPGRLVDHL--LHTASFKLFR-LQFLV 416
Query: 247 FDEADMLLCGSFQ---NQVIRLINMFRF-----DEK--QLSRMNESG------------- 283
DEAD LL ++ Q++ I+ R DEK QL R+ S
Sbjct: 417 LDEADRLLELGYERDVKQLVEAIDKHRLEAQGQDEKLPQLQRLLLSATLTAQVQELAGLA 476
Query: 284 VEKPLEMDNS-SLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRR 342
+ PL +DNS L+ +E Q + I E E D D G +E +G +
Sbjct: 477 LSDPLYIDNSDEAASAALKSKEGYQKDSI--EAQLEPD-DGLGEYQEDVTGVLS------ 527
Query: 343 VRKNYQRSKQYIFVAATLPING-----KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+ +N S YI V A L + K A KQ + ++FH+ L E
Sbjct: 528 IPENLHLS--YIVVPAKLRLVALSSLLAKELAASPKQFKAIIFMSTTEMVNFHHDMLNEA 585
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+D E VK+ E E + T +L+ G+ + H
Sbjct: 586 LTRRVLDED----DEQVKDNDEDSDEQDTS-------------TPLLQ--GLRFFKLHGS 626
Query: 458 LSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
++ ER F++ V + TD RGID+P++ VIQ + DF+HRVGRTAR
Sbjct: 627 MTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVIQYTPPQTTADFVHRVGRTAR 686
Query: 517 AGQYG 521
AG+ G
Sbjct: 687 AGRKG 691
>gi|322785859|gb|EFZ12478.1| hypothetical protein SINV_10006 [Solenopsis invicta]
Length = 936
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 132/518 (25%), Positives = 219/518 (42%), Gaps = 99/518 (19%)
Query: 84 VTWKSLGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
VT+ L + +I LE N G + + VQ ++ + S KDV+I ++TGSGKT +Y +P+
Sbjct: 280 VTFADLNIHPYMISNLEQNMGITKMTTVQQKAIPQIFSAKDVLIRSQTGSGKTLAYALPI 339
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+E L + N NS +LV+ P L Q L +P V
Sbjct: 340 VE-LLHKIRPQLNRNSG-------LSALVIVPTRELALQTYECFIKLV----KPFTWIVP 387
Query: 203 --VCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG+ K +++VSTP LL++I + R+ VKY V DEAD +L
Sbjct: 388 GYIIGGEKRKAEKARLRKGCNILVSTPGRLLDHIKHTKALRLN---DVKYFVLDEADRML 444
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVE---------KPLEMDNSSLTQPD--LQDE 303
++ + +++ + S ESG + K + + +++ D L+ E
Sbjct: 445 DMGYEMDISGIVSALKVS---CSNNEESGYDAMKIFKQNSKKIFTNEEEISKEDVKLKIE 501
Query: 304 ENLQDEYISDEGNFEGD-SDVEGLTEETKSGSIKKKDWRR----------------VRKN 346
+N D + + D SD + T S +KKD +R V ++
Sbjct: 502 KNSTDGSKKKQIHHSNDDSDCDQATNAVLSKK-RKKDMKRSAVNRESDSKAENVPNVEQH 560
Query: 347 Y--QRSKQYIFVAATLPINGKKTAGAVLKQ-MFPDA-----DWISGNYLHFHN----PR- 393
Y Q +Q I ++ATL +K AG + +F DA + GN + P+
Sbjct: 561 YESQSRRQTILLSATLTHAVEKLAGLTMHDPIFVDAAKENVETSGGNDSEINEDLIVPQS 620
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------ 447
+ + +I ++ L + R + + +T++F T D V T+IL +
Sbjct: 621 VNQNYIATPPKLRMVTLSAYIAGRCQTPGQ-HKTLIFMATQDMVDYYTEILSSVLTKPMD 679
Query: 448 ----------GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQ 497
+E + H +++ +ER + F RG+D+P V V+Q
Sbjct: 680 DDDEDSDPLVDVEFFKLHGNMTQKERTEIFKTF-------------TRGLDMPKVDCVVQ 726
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
SA D++HR+GRTARAG G T T S + V
Sbjct: 727 YTGPISARDYVHRIGRTARAGCSGTATIFLTPSEIEFV 764
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 14/214 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
K RR+ +Q +F +AT+P +K A +LK D +S + R++++
Sbjct: 168 KPIRRIVGTLPAKRQSLFFSATMPGEIRKLATDLLK----DPVTVSVTPVAKTADRVRQQ 223
Query: 398 WIEVTVDTQVDALIEAVKERLEFG-AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ V + D LIE FG A +RT+VF T VT+ L+ AGI + H
Sbjct: 224 VVFVETHRKRDILIEL------FGDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHG 277
Query: 457 DLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
+ S +R ++L+ F+ G V V TD AARGIDI V+HV+ + ++HR+GRT
Sbjct: 278 NKSQSQRERSLLAFRS-GHVRALVATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRT 336
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
ARAG G+ SL + RD + I + +L PV
Sbjct: 337 ARAGAEGIAISLCDGTERDYLRNIEKLTRLNLPV 370
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 30/194 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGL+ L+ L GF RP+ +QA ++ +L G+D++ A+TG+GKT ++ +P++
Sbjct: 4 FRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHA 63
Query: 146 LCTALGDSENSNSDKEPTP-PR--APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L T PTP PR A LVL P L Q+ L G+ +VA
Sbjct: 64 LIT------------HPTPAPRGGARVLVLSPTRELASQIAETFRTL----GQSHALSVA 107
Query: 203 VCGGQGWPIGKP-------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V G P + D++V+TP L+++ID + + ++ V DE D +L
Sbjct: 108 VVFGGVSPGAQIKALQRGLDILVATPGRLVDHIDSG----VAHLGKTEFFVLDEVDQMLD 163
Query: 256 GSFQNQVIRLINMF 269
F + R++
Sbjct: 164 LGFVKPIRRIVGTL 177
>gi|255596244|ref|XP_002536495.1| hypothetical protein RCOM_2088240 [Ricinus communis]
gi|223519505|gb|EEF25887.1| hypothetical protein RCOM_2088240 [Ricinus communis]
Length = 87
Score = 101 bits (252), Expect = 9e-19, Method: Composition-based stats.
Identities = 54/77 (70%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCY 454
KWIEVTVDTQVDALI+AVK+ G RTMVFANTVDAV AV KIL+ AGIECY Y
Sbjct: 1 KWIEVTVDTQVDALIDAVKQGSGSGLGVGVSRTMVFANTVDAVEAVVKILERAGIECYRY 60
Query: 455 HKDLSLEERAKTLVNFQ 471
HKD SLE+RA+TLV+ +
Sbjct: 61 HKDTSLEKRAETLVDMK 77
>gi|67515845|ref|XP_657808.1| hypothetical protein AN0204.2 [Aspergillus nidulans FGSC A4]
gi|74681551|sp|Q5BGX6.1|DBP7_EMENI RecName: Full=ATP-dependent RNA helicase dbp7
gi|40746921|gb|EAA66077.1| hypothetical protein AN0204.2 [Aspergillus nidulans FGSC A4]
gi|259489586|tpe|CBF89980.1| TPA: ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BGX6] [Aspergillus
nidulans FGSC A4]
Length = 778
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 215/470 (45%), Gaps = 66/470 (14%)
Query: 85 TWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPL 142
T+ +LGLS L L P+ +Q AS+ +L + D I AETGSGKT +YL+PL
Sbjct: 152 TFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPL 211
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS----LVLCPNVVLCEQV-VRMANALSADNGEPL 197
++++ AL ++N K T S ++L P LC+Q+ V + L +
Sbjct: 212 VQRIM-ALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAH---W 267
Query: 198 VRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ A V GG+ K +++V+TP L ++++ + V V+++V DE D
Sbjct: 268 IVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLE---NTQALDVSNVRWLVLDEGD 324
Query: 252 MLLCGSFQNQVIRLINMFRFDEKQL-SRMNESGVEKP-------LEMDNSSLTQPDLQDE 303
L+ F+ ++ +I+ + D +Q SR+ ++ L+M+ L + L+D
Sbjct: 325 RLMELGFEKELQEIIS--KLDARQRPSRIPGVPAKRATILCSATLKMNVQKLGEISLKDA 382
Query: 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA----- 358
+++ +D + +G+ E KD R Q + Y VAA
Sbjct: 383 VHIK----ADPADEDGEKTAE------------DKDGDAFRVPAQLKQSYAIVAAKLRLV 426
Query: 359 TLPINGKKT---AGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWIEVTVDTQVDALIEAV 414
TL K+T G+V+K + ++S + ++FH K E D ++
Sbjct: 427 TLTAFMKRTFMRKGSVMKAII----FVSCADSVNFHFEVFTRKLAEQLEGDNPDEGSDS- 481
Query: 415 KERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQEK 473
E + + T A+T V T ++ + Y H L R TL +F +
Sbjct: 482 -EHEKEKEKEKPTP--ASTHGTVAPATAFSNSSNAVTMYKLHGSLPQHVRTSTLSSFAKN 538
Query: 474 --GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
V +CTD A+RG+D+PNV V++ D A SA + LHR+GRTAR G+ G
Sbjct: 539 RDPSVLICTDVASRGLDLPNVDLVVEYDPAFSADEHLHRIGRTARLGRDG 588
>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 396
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 113/444 (25%), Positives = 189/444 (42%), Gaps = 91/444 (20%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ SLGLS ++ AL+ +G+ +P+ VQ ++ ++G+D+++++ TGSGKT ++++P IE
Sbjct: 35 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 94
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ ++P PR PS NG+ R
Sbjct: 95 RFA-----QLQKAQAQQPRAPREPS-----------------------NGDRRAR----- 121
Query: 205 GGQGWPIGKPDVIVSTPAALLN-------NIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
+ P+ +P ++V TP L + K RR+ V + V + + MLL
Sbjct: 122 --RPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSILGGVAYGQQLMLLA-- 177
Query: 258 FQNQVIRLINMFRF-DEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316
+N I + R D + R++ S + K L +D + + + D G
Sbjct: 178 -KNPEILVATPGRLLDHLERGRIDLSEL-KMLVLDEA---------------DRMLDMGF 220
Query: 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMF 376
E D+E + + T S+Q + +ATL +GK G++ ++
Sbjct: 221 IE---DIETIVDATPE-----------------SRQTMLFSATL--DGK--IGSLTSRLL 256
Query: 377 PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDA 436
D + I + + V D L++ + L A + A +DA
Sbjct: 257 KDPERIEIQQRLESRANIAQTVHYVDDRDHKDRLLDHL---LRDNALDQAIIFTATKIDA 313
Query: 437 VYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHV 495
+ L AG E H DL R +T+ +E+ V V TD AARGIDIP ++HV
Sbjct: 314 DQLAGR-LADAGFESAALHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHV 372
Query: 496 IQADFATSAVDFLHRVGRTARAGQ 519
D A D++HR+GRT RAG+
Sbjct: 373 FNYDLPKFAEDYVHRIGRTGRAGR 396
>gi|330798693|ref|XP_003287385.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
gi|325082590|gb|EGC36067.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
Length = 634
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 23/200 (11%)
Query: 70 DKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
++N S+D D T+ +GL R++RAL+ GF PS+VQ+ ++ L GKD++ A
Sbjct: 4 EQNVSND--LMDLETTFDQMGLDSRILRALKKMGFKNPSLVQSKAIPLSLQGKDILAKAR 61
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANA 188
TGSGKT +Y +P+I+K+ TA KE T + +++L P LCEQV +
Sbjct: 62 TGSGKTAAYSIPIIQKILTA----------KEKTNIKGVKAVILVPTRELCEQVKQHFTQ 111
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
LS + LV V + G + K PDVI+STP L+ ++ + + ++ +
Sbjct: 112 LSCYSSH-LVSVVQLGGDKSIDEQKGLLRDIPDVIISTPTRLVQHL---QNKTIQLQSSL 167
Query: 243 KYVVFDEADMLLCGSFQNQV 262
+V DEAD++L Q +
Sbjct: 168 DILVIDEADLVLSYGHQEDI 187
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
ARGID NV V+ DF + +++HR+GRTAR G+ S T +N +L+ +++
Sbjct: 381 GVARGIDFKNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTFNNENLLSKVQKT 440
>gi|393241453|gb|EJD48975.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 107/469 (22%), Positives = 180/469 (38%), Gaps = 107/469 (22%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
T++ G + ++ + GF P+ +Q + LSG+DVV A+TGSGKT S+ +P +
Sbjct: 103 TTFEEAGFPEYILGTIRAQGFSAPTAIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAM 162
Query: 144 EKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ N+ P P +LVL P L Q+ +++ +R A
Sbjct: 163 LHI----------NAQPLLAPGDGPIALVLAPTRELAVQIQTECTKFGSNS---RIRNTA 209
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+ GG PK + + RGV+ V+ ++ Q
Sbjct: 210 IYGGA----------------------PKGPQIRDLQRGVEIVIATPGRLIDMLESQKTN 247
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322
+R I DE RM + G E +
Sbjct: 248 LRRITYLVLDEA--DRMLDMGFEPQI---------------------------------- 271
Query: 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382
R++ + +Q + +AT P + +K A LK D+I
Sbjct: 272 ------------------RKIVSQIRPDRQTLMFSATWPKDVQKLAQDFLK------DYI 307
Query: 383 SGNYLHFH---NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
N N +K+ +EV D + + +K + E ++ ++F T
Sbjct: 308 QVNIGSMELAANHNIKQ-IVEVCTDFEKRGKL--IKHLEQISNENAKVLIFVGTKRVADD 364
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQA 498
+TK L+ G H D ER L F+ + + + TD A+RG+D+ +V +VI
Sbjct: 365 ITKYLRQDGWPALAIHGDKEQRERDWVLGEFKASRSPILIATDVASRGLDVKDVGYVINY 424
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAK 543
DF + D++HR+GRT RAG G + +T N R+L+ +R A +
Sbjct: 425 DFPNNCEDYIHRIGRTGRAGMKGTAYTYFTTDNSKAARELLGILREAKQ 473
>gi|384253618|gb|EIE27092.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 372
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 354 IFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT-QVDALIE 412
I V ATL +K +L FP+ + + LH + ++ + ++D L +
Sbjct: 162 ILVVATLSQAVRK----LLDTEFPNLKRVETSSLHRGVVGARHSFLAAPPNANKLDVLSQ 217
Query: 413 AVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ- 471
V A R MVF NT+D+ A L+ G+ CYH D+ L+ R + + F
Sbjct: 218 IVTGE---AARGKRLMVFCNTLDSCRATEHHLRERGVPTLCYHGDVPLDGRREAIAQFSN 274
Query: 472 -EKGG----VFVCTDAAARGIDIPN-VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
E G V VCTD AARG+D+P V HV+ DF + VD++HR GRTARAG G +TS
Sbjct: 275 SEPGPDGQPVLVCTDLAARGLDMPAAVDHVVNFDFPLNPVDYIHRTGRTARAGASGRITS 334
Query: 526 LYTESNRDLVDTIRRAAKLGQPV 548
+ + + L I+ A + +P+
Sbjct: 335 IVAKRDAVLAGRIKEALEQNRPL 357
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 26/159 (16%)
Query: 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177
VL G DV++A+ TGSGKT +YL+PL ++ + +P PRA ++L P
Sbjct: 15 VLHGGDVLLASHTGSGKTLAYLLPL-----------KDGSVQAKPKRPRA--IILGPTRE 61
Query: 178 LCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPK 231
L +Q++ +A ++S + R+ + GG Q + +P D++V TP L+ + +
Sbjct: 62 LTDQILSVAKSISH---KAKFRSACINGGGSMGQQKEALERPLDILVGTPQKLVQHAE-- 116
Query: 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270
+ + V+YVV DEAD + F +V ++ R
Sbjct: 117 --KGHLYWGDVQYVVLDEADTMFDKGFGPEVRAVLGPLR 153
>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
Length = 754
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/473 (24%), Positives = 201/473 (42%), Gaps = 113/473 (23%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL-- 142
+W+ + +++ RA++ G+ +PS +Q AS+ L +DV+ AETGSGKT +++VP+
Sbjct: 323 SWEESTMPEQVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLA 382
Query: 143 -IEKL------CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSA 191
I++L ALG P A LV+ P L +Q+ V+ A ++
Sbjct: 383 YIQELPPMTDEVAALG-------------PYA--LVMAPTRELAQQIEEETVKFAQFMN- 426
Query: 192 DNGEPLVRAVAVCGGQ-----GWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
R +V GGQ G+ + + ++++ TP +++ ++ RR ++ Y+
Sbjct: 427 ------YRVASVVGGQSIEEQGFKLRRGCEIVIGTPGRIIDVLE----RRYTVLQQCNYI 476
Query: 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVE--KPLEMDNSSLTQPDLQDE 303
V DEAD R+I+M F+ + +S M+ E KP E + + DE
Sbjct: 477 VLDEAD------------RMIDMG-FEPQVISVMDSMSAESLKPEE-------EAEKIDE 516
Query: 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPIN 363
+ L E + + + T S++K +++Y+ A + I
Sbjct: 517 QGL-------EASLGTKYRMTYMFSATMPPSVEK-----------LARKYMRNPAVVTIG 558
Query: 364 GKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAE 423
++KQ+ W + N P E + DTQ
Sbjct: 559 SAGKTSDLIKQIV---QWTTSN----QKPAQLELVLSQYPDTQA---------------- 595
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDA 482
++F NT V V+ + G H S ++R ++L F Q + + V TD
Sbjct: 596 ----IIFVNTKRVVDHVSNLCFKMGYSVGAIHGGKSQDQREESLRGFKQGEYDILVATDV 651
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
A RGID+ + V+ + ++ HR+GRT RAG+ G S T + D++
Sbjct: 652 AGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGRAGRQGTAVSFLTSEDTDVM 704
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 18/181 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ + DRL++A+ G+ PS +Q ++ P L GKD++I A+TGSGKT +YL+PLI+K
Sbjct: 5 FTDFDIDDRLVKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIPLIQK 64
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV---- 201
+ +KE P+ S+VL P+ LC+Q R A L++ + LV V
Sbjct: 65 IL----------KNKESNKPKTLSVVLVPSKELCKQSYRNALDLTSYCSK-LVSVVDLGN 113
Query: 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
+ I D+++STP+ +L +I+ K +F + Y++ DEADM+ ++
Sbjct: 114 STVQSSSSLINNADILISTPSKILAHINNKTINLKDF---LDYLILDEADMMFSYGYEQD 170
Query: 262 V 262
+
Sbjct: 171 L 171
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
A ARGID +V +V+ DF + ++HRVGRTAR +G S S
Sbjct: 339 AVARGIDFQDVDNVLNFDFPETGDAYIHRVGRTARGNNHGTALSFVASS 387
>gi|453081481|gb|EMF09530.1| ATP-dependent RNA helicase dbp7 [Mycosphaerella populorum SO2202]
Length = 776
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 207/467 (44%), Gaps = 46/467 (9%)
Query: 81 DDNVTWKSLGLSDRLI-RALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSY 138
D+ + SLGLS L L+ P+ +Q +V ++S D I A+TGSGKT +Y
Sbjct: 146 DETAKFTSLGLSPTLAAHLLKKLNITAPTAIQRKAVSQLVSHDTDAFIQAQTGSGKTLAY 205
Query: 139 LVPLIEK--LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
L+P++E+ L + E + D+ ++VL P L Q+ + +L +
Sbjct: 206 LLPIVERISLISRRMKDEGAKFDRHSG---LFAIVLAPTRELARQIADVLESLLS--CYH 260
Query: 197 LVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
V V GG+ K +++V+TP + ++++ + VR ++V DE
Sbjct: 261 WVVGGTVIGGENKKSEKSRLRKGLNILVATPGRMADHLENTEALDLSNVR---WLVLDEG 317
Query: 251 DMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPL----EMDNSSLTQPDLQDE-EN 305
D L+ F+ + ++I++ ++ VEKP+ E + L ++ E
Sbjct: 318 DRLMELGFEQDIQKIISVLNLRSRKR-------VEKPVPGLPERRTTVLCSATIKSNVEQ 370
Query: 306 LQDEYISDEGNFEGDSD--VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPIN 363
L+ + D + DSD EG E ++ ++ ++ + + ATL
Sbjct: 371 LRAISLKDPVSIAVDSDPTAEGDGEAIENNFSAPAQLKQGYAIVPPKQRLVTLVATLKQQ 430
Query: 364 GKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGA 422
K+ G+VLK + ++S + + FH L V+ +V ++ + K +
Sbjct: 431 FKRK-GSVLKCIV----FMSCADSVDFHFELLTRGDKTAAVEDEVASVAKQHKPGKHSNS 485
Query: 423 ETSRTMVF-ANTV-----DAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKG 474
R + NT+ + A ++ I+ + H L R TL F E
Sbjct: 486 SVDRNKIAQGNTIAETRTEGTAASLSSRESGDIKIFRLHGSLQQTTRTSTLKAFSTCEDP 545
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
V VCTD AARG+D+PNV VI+ D S D LHR+GRTARAG+ G
Sbjct: 546 AVLVCTDVAARGLDLPNVDLVIEYDPPFSKDDHLHRIGRTARAGRDG 592
>gi|390598082|gb|EIN07481.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 752
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/458 (22%), Positives = 196/458 (42%), Gaps = 77/458 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+W+ + +++ +++ G+ PS +Q ++ L +DV+ AETGSGKT ++++P++
Sbjct: 322 SWEESDIPAQILEIVDSIGYKEPSPIQRQAIPIGLQNRDVIGIAETGSGKTAAFVIPML- 380
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L N P +L++ P L +Q+ A + G + V++
Sbjct: 381 AFISKLPAFTEENRHLGPY-----ALIMAPTRELAQQIESEARKFATPLG---YKCVSIV 432
Query: 205 GGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+ + ++I++TP L + ++ R + + +YVV DEAD ++ F
Sbjct: 433 GGRAVEEQQFNLREGAEIIIATPGRLKDVLE----RHVLVLSQCRYVVMDEADRMVNLGF 488
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318
+ ++ +++ +L +G E M+ DEE + ++ +
Sbjct: 489 EADLLFILD-------KLPSEAMAGEESTTAMEV---------DEEGGTNVVVT-----K 527
Query: 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPD 378
G + V L T ++ R+ K Y R + + AG + +
Sbjct: 528 GRTRVTTLFSATMPPPVE-----RIAKKYLRKPAVVTIG---------EAGRAVDTVEQR 573
Query: 379 ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438
+++SG+ + K+K +E+ Q I +VF N
Sbjct: 574 VEFVSGD------EKKKQKMLEILNSNQYAPPI----------------IVFVNQKKTAD 611
Query: 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQ 497
V K L+ AG H + E+R L + ++ + V TD A RGID+P+V+ VI
Sbjct: 612 MVAKDLQRAGWSAATLHSGKNQEQREAALQSLRDGHADILVATDLAGRGIDVPDVTLVIN 671
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
A + ++HR+GRT RAG+ G + T + +++
Sbjct: 672 YQMANTIEAYVHRIGRTGRAGKQGTAITFLTNEDAEVM 709
>gi|392572621|gb|EIW65766.1| hypothetical protein TREMEDRAFT_46029 [Tremella mesenterica DSM
1558]
Length = 558
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 181/463 (39%), Gaps = 101/463 (21%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G D ++ + GF P+ +Q + LSG+DVV AETGSGKT S+ +P +
Sbjct: 130 TFDEAGFPDYIMTEIHAMGFAAPTPIQCQAWPMALSGRDVVAIAETGSGKTISFALPAMV 189
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L Q+ A + +R A+
Sbjct: 190 HI----------NAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGKSS---RIRNTAI 236
Query: 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG PK + + RGV+ VV
Sbjct: 237 YGGA----------------------PKGPQIRDLQRGVEVVVATPG------------- 261
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
RLI+M + L R+ L MD + + + D G FE
Sbjct: 262 RLIDMLESGKTNLKRVTY------LVMDEA---------------DRMLDMG-FE----- 294
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
R++ + +Q + +AT P + ++ A L F + S
Sbjct: 295 --------------PQIRKIVSQIRPDRQTLLFSATWPKDVQRLAMDFLHD-FIQVNIGS 339
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
+ HN ++ +E+ T D +K + E ++ ++F T +TK
Sbjct: 340 LDLTANHN---VQQIVEIC--TNYDKRNMMLKHLEQISQENAKVLIFVGTKRVADDLTKH 394
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
L+T G H D ER L F+ + + + TD A+RGID+ ++ +VI DF
Sbjct: 395 LRTDGWPALAIHGDKQQGERDWVLSEFKSGRSPIMIATDVASRGIDVRDIKYVINYDFPN 454
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
+ D++HR+GRT RAGQ G + +T N R+LV +R +
Sbjct: 455 NCEDYVHRIGRTGRAGQTGTAYTFFTADNSKSARELVGILRES 497
>gi|334128555|ref|ZP_08502443.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
gi|333387232|gb|EGK58435.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
Length = 423
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/473 (25%), Positives = 185/473 (39%), Gaps = 115/473 (24%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LG+S+ L+ L+ G P+ VQ ++ P+ +G+DV+ A+TG+GKT ++L+PL+ K
Sbjct: 4 FDQLGVSETLVTLLKKQGIIEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTIAFLLPLLAK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ +P A +LV+ P L Q+ R+A EPL
Sbjct: 64 I--------------KPQGAAAQALVIAPTRELAIQIARVA--------EPL-------- 93
Query: 206 GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA--DMLLCGSFQNQVI 263
G IG IV A + K RRR + + G + D L GS
Sbjct: 94 GAELGIG---TIVIYGGADIERQKEKLRRRPQLIIGTPGRLLDHVRRGTLALGS------ 144
Query: 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323
+N DE +E L+ +I D V
Sbjct: 145 --VNKIVLDEA----------------------------DEMLKMGFIED---------V 165
Query: 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
E L +T +D+ Q +AT+P + + P I
Sbjct: 166 ETLLTKTA------QDY-----------QLALFSATMPERIVRLTKRFMTN--PAHIRIE 206
Query: 384 GNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443
G N +++ + V+ T++D L ++ E + A MVF T + A+
Sbjct: 207 GERTTLEN--IEQIVLSVSEGTKLDRLCASINEEAPYLA-----MVFCATKERTRALMME 259
Query: 444 LKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVC-TDAAARGIDIPNVSHVIQADFAT 502
L G DL+ +RA L F+E +C TD AARG+DI V+HV D
Sbjct: 260 LARRGYLVDALSGDLTQTQRAFVLRQFREAKLQILCATDIAARGLDIEGVTHVYNYDLPP 319
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRD--------LVDTIRRAAKLGQP 547
+ D++HR+GRT RAG G +L + L + +RRA +P
Sbjct: 320 TVTDYIHRIGRTGRAGSQGKAITLVAAHQHEKLRKMESALKERLRRAVAKKKP 372
>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
Length = 556
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 186/452 (41%), Gaps = 63/452 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ + L L+ ++ + +P+ VQ S+ L+G+D++ A+TGSGKT ++ P+I
Sbjct: 33 SFEDVDLPPALMENVKRCKYNKPTPVQRYSIPIGLAGRDMMACAQTGSGKTAAFCFPIIG 92
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + + P +LVL P L Q+ + + G VR V V
Sbjct: 93 NILRSGYTPLRGSRKAFPL-----ALVLSPTRELSTQIYDESRKFTYQTG---VRPVVVY 144
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
GG P++++ E RG ++V ++ +
Sbjct: 145 GGA----------------------PQQQQLRELERGCDFLVATPGRLIDIMDRARVSLG 182
Query: 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324
+ DE RM + G E + P L S E
Sbjct: 183 KVRFLALDEA--DRMLDMGFEPQIRRRGPLPGLPRLSP---------SPAAAPEAWPCRR 231
Query: 325 GLTEETKSGSI-KKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383
GL ++ I ++D R + +Q + +AT P ++ A AD++
Sbjct: 232 GLPRPRRNPPIVDEEDMPRPGE-----RQTLLFSATFPKEIQRLA----------ADFLH 276
Query: 384 GNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAV 440
NY+ R+ + ++V + + V + L+ E T++F T A+
Sbjct: 277 -NYIFLTVGRVGSSTDLIVQVIEYVPIQDKRQMVLDLLQ-TLEKGLTLIFVETKKGADAL 334
Query: 441 TKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQAD 499
L G+ H D S ER L +F+ + V V TD AARG+DIP+V+HVI D
Sbjct: 335 EDFLCRNGLPATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHVINFD 394
Query: 500 FATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
+ D++HR+GRT RAG+ GL T+ ++E +
Sbjct: 395 LPSDIDDYVHRIGRTGRAGKKGLATAFFSEKD 426
>gi|66813958|ref|XP_641158.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
gi|74997096|sp|Q54VF1.1|DDX56_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx56; AltName:
Full=DEAD box protein 56
gi|60469187|gb|EAL67182.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
Length = 685
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
SSD D T++S+GL +R++RAL+ GF PS+VQ+ S+ L GKD++ A TGSG
Sbjct: 15 SSD--LIDLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSG 72
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
KT +Y +P+I+K+ A E SN ++VL P LCEQV N +S
Sbjct: 73 KTAAYSIPIIQKVLMA---KEKSN------IKGVKAVVLVPTRELCEQVKNHFNQVSY-Y 122
Query: 194 GEPLVRAVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ LV V + + K PDVIVSTP L+ +++ K ++ + +V
Sbjct: 123 CQQLVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENK---TIQLQSTLDILVI 179
Query: 248 DEADMLLCGSFQNQV 262
DEAD++L QN +
Sbjct: 180 DEADLVLNYGHQNDI 194
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
ARGID NV V+ DF + +++HR+GRTAR G+ S T N +L+ + +
Sbjct: 426 GVARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKT 485
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R K+ + Q I V AT+ K ++ + F + + + LH + +I++
Sbjct: 298 RTSKSDGQGFQTILVTATM----TKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKL 353
Query: 402 T-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + +++AL++ ++ L A+ +R MVF NT+++ A L I YH ++
Sbjct: 354 SGSENKLEALLQVLEPSL---AKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPA 410
Query: 461 EERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
E+R + L F+ G VCTD AARG+D+ +V HVI DF +++D+LHR GRTAR
Sbjct: 411 EQRVENLNKFKSDDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 469
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G G VTSL ++ L I A +
Sbjct: 470 GAKGKVTSLVARKDQQLAARIEEAMR 495
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGLS+ ++ A++ G P+ +Q + +L + VV+ + TGSGKT +Y++PL++
Sbjct: 117 SFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQ 176
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++ R+ V
Sbjct: 177 LLRR---DEALLGRLMKPRRPRA--VVLCPTRELSEQVFRVAKSIGH---HARFRSTMVS 228
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L +I V G +KY+V DEAD +
Sbjct: 229 GGGRMRPQEDSLNNPIDMVVGTPGRVLQHIQDG-----NMVYGDIKYLVLDEADTMFDRG 283
Query: 258 F 258
F
Sbjct: 284 F 284
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 109/196 (55%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV-DTQVDAL 410
Q + V AT+ + +K ++ + F + + + LH + +I+++ + +++AL
Sbjct: 304 QTVLVTATMTMAVQK----LVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEAL 359
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ S+ MVF NT+++ AV L I YH ++ E+R + L F
Sbjct: 360 LQVLEPSL---AKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKF 416
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+++ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G G VTSL
Sbjct: 417 KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLV 475
Query: 528 TESNRDLVDTIRRAAK 543
+ ++ L I A +
Sbjct: 476 SRKDQMLAARIEEAMR 491
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 29/229 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ- 172
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + +N K+ P R ++VLCP L EQV R+A ++S R++ V G
Sbjct: 173 ----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH---HARFRSILVSG 225
Query: 206 GQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLC 255
G +P D++ TP +L +I+ V G + Y+V DEAD +
Sbjct: 226 GSRI---RPQEDSLNNAIDMVAGTPGRILQHIE-----EGNMVYGDIAYLVLDEADTMFD 277
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F ++ + + +++ L + N+ G + L ++ L DEE
Sbjct: 278 RGFGPEIRKFLAP--LNQRAL-KTNDQGFQTVLVTATMTMAVQKLVDEE 323
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 109/196 (55%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV-DTQVDAL 410
Q + V AT+ + +K ++ + F + + + LH + +I+++ + +++AL
Sbjct: 304 QTVLVTATMTMAVQK----LVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEAL 359
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ S+ MVF NT+++ AV L I YH ++ E+R + L F
Sbjct: 360 LQVLEPSL---AKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKF 416
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+++ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G G VTSL
Sbjct: 417 KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLV 475
Query: 528 TESNRDLVDTIRRAAK 543
+ ++ L I A +
Sbjct: 476 SRKDQMLAARIEEAMR 491
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 29/229 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ- 172
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + +N K+ P R ++VLCP L EQV R+A ++S R++ V G
Sbjct: 173 ----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH---HARFRSILVSG 225
Query: 206 GQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLC 255
G +P D++V TP +L +I+ V G + Y+V DEAD +
Sbjct: 226 GSRI---RPQEDSLNNAIDMVVGTPGRILQHIE-----EGNMVYGDIAYLVLDEADTMFD 277
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F ++ + + +++ L + N+ G + L ++ L DEE
Sbjct: 278 RGFGPEIRKFLAP--LNQRAL-KTNDQGFQTVLVTATMTMAVQKLVDEE 323
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 15/145 (10%)
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+++AL++ ++ L A+ SR MVF +VD+ AV L + C YH ++ E+R K
Sbjct: 348 KLEALVQVLEPAL---AKGSRCMVFCRSVDSCRAVDHYLNEMDVHCVNYHGEVPAEDRIK 404
Query: 466 TLVNFQEKGG-----VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
L F+ + G +CTD AARG+D+ V HVI DF ++++D+LHR GRTAR G
Sbjct: 405 NLAKFKIEDGEGPVPALICTDLAARGLDL-QVDHVINFDFPSTSIDYLHRSGRTARMGLK 463
Query: 521 GLVTSLYTE-----SNRDLVDTIRR 540
G VTSL T+ +NR L D +RR
Sbjct: 464 GRVTSLVTKRELALANR-LEDAMRR 487
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGL++ L A+E P+ VQ ++ +L G++VV+A+ TGSGKT +Y++PL++
Sbjct: 102 SFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLPLVQ 161
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN----GEPLVRA 200
+ S + + +LVLCP L EQV+ + S R+
Sbjct: 162 VYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHARFRS 221
Query: 201 VAVCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + G D++V TP LL +++ + F +KYVV DEAD +
Sbjct: 222 AMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEG---NLAFG-DIKYVVIDEADTMF 277
Query: 255 CGSFQNQVIRLINMFR 270
F ++ ++I+ R
Sbjct: 278 DRGFGPELKKIIDPLR 293
>gi|361129692|gb|EHL01580.1| putative ATP-dependent RNA helicase dbp7 [Glarea lozoyensis 74030]
Length = 589
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 185/422 (43%), Gaps = 58/422 (13%)
Query: 123 DVVIAAETGSGKTHSYLVPLIEKL-CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181
D I AETGSGKT +YL+P++E+L + GD++ +++L P LC+Q
Sbjct: 7 DAFIQAETGSGKTLAYLLPIVERLLAMSKGDAKIHRDSG------IFAIILAPTRELCKQ 60
Query: 182 VVRMANALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRR 235
+ + L P + V GG+ K +++++TP L +++D +
Sbjct: 61 IAGVLERLL--RCAPWIVGTTVIGGESKQSEKARLRKGVNILIATPGRLSDHLDNTEVLK 118
Query: 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
V V+++V DE D L+ F+ ++ ++ R ++ +N + + + L
Sbjct: 119 ---VAQVRWLVLDEGDRLMELGFEEEIKGIVERVRRSSLRVETLNGIDLTALPKRRITVL 175
Query: 296 TQPDLQ-DEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354
++ + + L + ++D + + D E + +G + + ++ Q + Y
Sbjct: 176 CSATMKMNVQRLGEISLTDAVHIQADPADEDTLKVLPAGD--ETEEKKFSAPAQLKQAYA 233
Query: 355 FVAATLPINGKKTAGAVLKQMFPD-------------ADWISGNYLHFHNPRLKEKWIEV 401
V A L + T ++LK+ F AD + ++ F P
Sbjct: 234 VVPAKLRLV---TLASILKRAFARRGSVMKAIVFISCADSVDFHFSMFSRP--------- 281
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
+ D +IE + L G T T+ T + T + + H L+
Sbjct: 282 PPPAEGDTVIE--RPELPKGELTKDTIAHGTTFSS--------DTNSVVLHRLHGSLAQN 331
Query: 462 ERAKTLVNFQE--KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
R TL F + + V +CTD A+RG+D+PNV +VI+ D SA D LHRVGRTARAG+
Sbjct: 332 IRTATLKAFTQSTEPCVLICTDVASRGLDLPNVDYVIEYDPPFSAEDHLHRVGRTARAGR 391
Query: 520 YG 521
G
Sbjct: 392 EG 393
>gi|449668938|ref|XP_002167365.2| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Hydra
magnipapillata]
Length = 568
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 114/450 (25%), Positives = 193/450 (42%), Gaps = 57/450 (12%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
+ +P+ VQ +++ ++ G D+V+ A+TGSGKT ++L+P+I K+ + D++
Sbjct: 105 YKKPTPVQKSAIPLMIEGLDLVVCAQTGSGKTAAFLIPIIAKVLSKPKDAQ--------V 156
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGK--------PD 215
+ +L+L P L Q+ R A L+ E ++ V GG+ I K D
Sbjct: 157 LSKPYALILTPTRELTIQIHRDAVRLTK---ETHIKCCCVYGGKD--ISKNIFNINAGCD 211
Query: 216 VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF--DE 273
+++ T L + ++ + V+ V DE D +L +F I+ IN E
Sbjct: 212 ILIGT----LGRVAIILKKFKNLLSTVQIFVLDEGDHMLGSNFIAH-IKKINKKYLPPKE 266
Query: 274 KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE-ETKS 332
K+ + + + + +D D + +N+ I E + D +V+ E E K
Sbjct: 267 KRQTVLFCATLPDNFCIDPKVKCDVDQKVVDNIAK--IKTEKDDTDDKEVKDAVEPEIKK 324
Query: 333 GSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP 392
S K + + N + + + + I+ G V ++I +++ N
Sbjct: 325 ASHKNAKIKNNQTNINETLKKLLKDDYIFISVGSIDGTV--------NFIDQSFVKVQND 376
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
K K + +D LI KE E +T+VF T + K L G +
Sbjct: 377 TPKIKML-------IDILI---KESF----ENRKTVVFVETKKETRKLAKFLCCCGFKVT 422
Query: 453 CYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
+HKD +R + L F + +CT +ARG+DI V VI D +L+R+
Sbjct: 423 VFHKDRCQRDREEALHQFNTGVKPIMICTSVSARGLDIIEVKTVINYDLPQDISTYLYRI 482
Query: 512 GRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
GRT RAG G S + E NRD D I R
Sbjct: 483 GRTGRAGHAGKSISFFVE-NRD--DPIARG 509
>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
Length = 854
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 37/234 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS ++RA+ GF P+ +Q ++ VL G+DVV A TGSGKT ++++P+IEK
Sbjct: 67 FQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMARTGSGKTAAFVIPMIEK 126
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + S + +++L P+ L Q +++ S D +R + G
Sbjct: 127 LKASRAQSGSR------------AIILSPSRELALQTMKVVKDFSKDTN---LRTAVIVG 171
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G+G KPD+IV+TP L+ K ++E + ++YVVFDEAD L F
Sbjct: 172 GEGLEEQFSILTNKPDIIVATPGRFLH---LKVEMKLE-LGSIEYVVFDEADRLFEMGFA 227
Query: 260 NQVIRLIN-------MFRFDE---KQLSRMNESGVEKPL--EMDNSSLTQPDLQ 301
Q+ +++ F K L ++G+++P+ +D S DLQ
Sbjct: 228 AQLTEILHGLPSSRQTLLFSATLPKNLVEFAKAGLQEPILVRLDVESKVSSDLQ 281
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+E ++ E A S T+VF T V +T++LK AG + L R + N
Sbjct: 330 LLEHTLKKPETAASDS-TIVFVPTKHHVEYITEMLKQAGYGVSRIYGSLDQTARKNEITN 388
Query: 470 FQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
F+ V V TD AARGIDIP +S+V+ DF F+HRVGRTARAG+ G
Sbjct: 389 FRLGVSNVLVVTDVAARGIDIPLLSNVVNYDFPAQPKIFVHRVGRTARAGRTG 441
>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175401|sp|Q09719.1|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe]
Length = 848
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 25/190 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L+RA+ GF P+ +Q ++ +L G+DVV A TGSGKT ++++P+IE
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + L NSN+ +L+L PN L Q V++ S +R+VA+ G
Sbjct: 131 LKSTLA---NSNTR---------ALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVG 175
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G GKPD++V+TP L+ K ++E + ++YVVFDEAD L F
Sbjct: 176 GVSLEEQFSLLSGKPDIVVATPGRFLH---LKVEMKLE-LSSIEYVVFDEADRLFEMGFA 231
Query: 260 NQVIRLINMF 269
Q+ +++
Sbjct: 232 AQLTEILHAL 241
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAAR 485
T+VF T V V+++L AG + L E R + NF+ K + V TD A+R
Sbjct: 349 TLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASR 408
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
GIDIP +++VI DF F+HRVGRTARAG+ G SL
Sbjct: 409 GIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSL 449
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 22/225 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +T+ +LGL++ L+RA+ ++G+ P+ +QA ++ V+ G D++ AA+TG+GKT + +
Sbjct: 2 DSQITFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTL 61
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ +L N +++P PRA L+L P L QV S +R+
Sbjct: 62 PILHRLLN------NPQQNRKPGRPRA--LILAPTRELAAQVEESVRLYSQHT---RLRS 110
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + GG Q + KP D++V+TP LL+++ R+R + GV+ +V DEAD +L
Sbjct: 111 MVMFGGVNINPQFHALRKPLDILVATPGRLLDHV----RQRTVDLTGVEILVLDEADRML 166
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
F + ++I++ E+Q + + ++ E+ SL PD
Sbjct: 167 DMGFIRDIRKIISLMPV-ERQTLLFSATFSDEIRELARGSLNNPD 210
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++ +VF T + + L G+ H + S R + L F+ K V V TD A
Sbjct: 250 NQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVVVLVATDIA 309
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
ARG+DI + +V+ + D++HR+GRT RAG G+ SL S L+ I R +
Sbjct: 310 ARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLLKQIERMTR 369
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV-DTQVDAL 410
Q + V AT+ +K ++ + F + + + LH + +I+++ + +++AL
Sbjct: 304 QTVLVTATMTTAVQK----LVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEAL 359
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ S+ MVF NT+++ AV L I YH ++ ++R + L F
Sbjct: 360 LQVLEPSL---AKGSKVMVFCNTLNSSRAVDHFLSENQISTVNYHGEVPADQRVENLKKF 416
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+++ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G G VTSL
Sbjct: 417 KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLV 475
Query: 528 TESNRDLVDTIRRAAK 543
+ ++ L I A +
Sbjct: 476 SRKDQMLAARIEEAMR 491
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ- 172
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + +N K+ P R ++VLCP L EQV R+A ++S R++ V G
Sbjct: 173 ----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH---HARFRSILVSG 225
Query: 206 GQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLC 255
G +P D++V TP +L +I+ V G + Y+V DEAD +
Sbjct: 226 GSRI---RPQEDSLNNAIDMVVGTPGRILQHIE-----EGNMVYGDITYLVLDEADTMFD 277
Query: 256 GSFQNQVIRLI 266
F ++ + +
Sbjct: 278 RGFGPEIRKFL 288
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q + V AT+ K ++ + F + + LH + +I+++ + ++D+L
Sbjct: 301 QTVLVTATMT----KAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKLSGTENKLDSL 356
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ +R MVF NT+++ AV L+ I YH ++ +R + L F
Sbjct: 357 LQVLEPSL---AKGNRVMVFCNTLNSSRAVDHFLEENQISTVNYHGEVPAAQRVENLNKF 413
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ VCTD AARG+D+ +V HVI DF +++D+LHR GRTAR G G +TSL
Sbjct: 414 KSNNDDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKITSLV 472
Query: 528 TESNRDLVDTIRRAAK 543
T+ + L I A K
Sbjct: 473 TKKDYSLATKIEEAIK 488
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL D ++ A+ G P+ +Q V VL GK VV+ + TGSGKT +YL+PL++
Sbjct: 110 SFEGLGLGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQ 169
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D + + +P PRA +VLCP L EQV R+A A+S R V
Sbjct: 170 LLRR---DEQMNGLVLKPKRPRA--VVLCPTRELSEQVFRVAKAISH---HARFRCTMVS 221
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L +I+ V G ++YVV DEAD +
Sbjct: 222 GGGRLRPQEESLSNPIDMVVGTPGRILQHIEEG-----NMVYGDIQYVVLDEADTMFDRG 276
Query: 258 F 258
F
Sbjct: 277 F 277
>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
Length = 507
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 133/268 (49%), Gaps = 40/268 (14%)
Query: 60 GFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119
G + AA D GS D + +TWK LGL++ L +A + + PS +Q ++ L
Sbjct: 37 GDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVAL 96
Query: 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179
GKDV+ AETGSGKT ++ +P++ L EN P R +LVL P L
Sbjct: 97 QGKDVIGLAETGSGKTGAFALPILHALL------EN--------PQRYFALVLTPTRELA 142
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRR 233
Q+ AL + G ++ V GG QG + KP +I++TP L+++++ +
Sbjct: 143 FQIGEQFEALGSGIG---IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG 199
Query: 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESG 283
+ + +KY+V DEAD +L F+ ++ +++ + F F K++ ++ +
Sbjct: 200 FNL---KAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRAS 256
Query: 284 VEKPLEMDNSSLTQPDLQDEENLQDEYI 311
++ P++++ S+ Q E LQ Y+
Sbjct: 257 LKDPVKVEVSN----KYQTVEQLQQSYL 280
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 304 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 363
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L ++ + +L I
Sbjct: 364 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
gi|384475998|gb|AFH89832.1| FI20110p1 [Drosophila melanogaster]
Length = 507
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 133/268 (49%), Gaps = 40/268 (14%)
Query: 60 GFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119
G + AA D GS D + +TWK LGL++ L +A + + PS +Q ++ L
Sbjct: 37 GDSEAALSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVAL 96
Query: 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179
GKDV+ AETGSGKT ++ +P++ L EN P R +LVL P L
Sbjct: 97 QGKDVIGLAETGSGKTGAFALPILHALL------EN--------PQRYFALVLTPTRELA 142
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRR 233
Q+ AL + G ++ V GG QG + KP +I++TP L+++++ +
Sbjct: 143 FQIGEQFEALGSGIG---IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG 199
Query: 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESG 283
+ + +KY+V DEAD +L F+ ++ +++ + F F K++ ++ +
Sbjct: 200 FNL---KAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRAS 256
Query: 284 VEKPLEMDNSSLTQPDLQDEENLQDEYI 311
++ P++++ S+ Q E LQ Y+
Sbjct: 257 LKDPVKVEVSN----KYQTVEQLQQSYL 280
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 304 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 363
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L ++ + +L I
Sbjct: 364 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
>gi|357441703|ref|XP_003591129.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480177|gb|AES61380.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 604
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D++ +++ LGL RL+RAL +P+ +Q ++ +L GKDVV A+TGSGKT +YL+
Sbjct: 22 DEDRSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLL 81
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
PL++KL TA N D++ P VL P+ LC+Q+ +L PL +A
Sbjct: 82 PLLQKLFTA-------NVDRKKLAPNV--FVLAPSRELCQQIYVEVKSLLELCKVPL-KA 131
Query: 201 VAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + Q +G PDV++STPA + + + ++ +V DEAD+LL
Sbjct: 132 VQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLL 191
Query: 255 CGSFQNQV 262
++N +
Sbjct: 192 SYGYENDI 199
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 38/150 (25%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCTD- 481
+ ++F N +D + + L+ GI+ + +L R L F G+F + TD
Sbjct: 282 KVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFN--AGLFDYLIATDI 339
Query: 482 --------------------------------AAARGIDIPNVSHVIQADFATSAVDFLH 509
RGID NV VI + S ++H
Sbjct: 340 SQSTEKDEAPKENIVGSKKSRKYTKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVTGYVH 399
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
R+GRT RA G SL + D + +R
Sbjct: 400 RIGRTGRAYSSGTSISLVSTDEMDTFEEVR 429
>gi|301792825|ref|XP_002931379.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like
[Ailuropoda melanoleuca]
Length = 532
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 200/484 (41%), Gaps = 94/484 (19%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N S++ FA +LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 112 RNPPSESCFA-------ALGLEPRVLHALQEAAPEVVRPTTVQSSTIPPLLRGRHILCAA 164
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y + S T PR LVL P+ L +QV +A
Sbjct: 165 ETGSGKTLGY-----LLPLLQRLLGQPSLDSHSITAPRG--LVLVPSRELAKQVRAVAQP 217
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
L G ++ + + GG+G +++I R + + V
Sbjct: 218 LGISLG---LQVLELGGGRG----------------MSSI------RQQLCKQPPVDVLV 252
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ- 307
+L + + Q+I L KQLS L +D + L DE L+
Sbjct: 253 ATPGVLWKALKGQLISL--------KQLSY---------LVLDEAD----TLLDESFLEL 291
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKT 367
EYI ++ + D ++ + Q + V AT P
Sbjct: 292 VEYILEKSHIAEDPA-------------------DLKDPFNPKAQLVLVGATFPAG---- 328
Query: 368 AGAVLKQMF-PDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE--RLEFGAE 423
G +L ++ PD+ I+ + LH P +K+ ++ + +V L++ +K+ R
Sbjct: 329 VGQLLSKVASPDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVTELVQILKQHDRAYRTGP 388
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDA 482
+ +VF ++ V + IL I+ + RA FQE + +CTD
Sbjct: 389 SGTVLVFCSSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQGFQEGSRDILLCTDI 448
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-NRDLVDTIR 539
A+RG+D +V V+ DF + D++HR GR R G G V S T + LV I
Sbjct: 449 ASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIE 508
Query: 540 RAAK 543
AA+
Sbjct: 509 LAAR 512
>gi|281338797|gb|EFB14381.1| hypothetical protein PANDA_022388 [Ailuropoda melanoleuca]
Length = 530
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 200/484 (41%), Gaps = 94/484 (19%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N S++ FA +LGL R++ AL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 112 RNPPSESCFA-------ALGLEPRVLHALQEAAPEVVRPTTVQSSTIPPLLRGRHILCAA 164
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT Y + S T PR LVL P+ L +QV +A
Sbjct: 165 ETGSGKTLGY-----LLPLLQRLLGQPSLDSHSITAPRG--LVLVPSRELAKQVRAVAQP 217
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
L G ++ + + GG+G +++I R + + V
Sbjct: 218 LGISLG---LQVLELGGGRG----------------MSSI------RQQLCKQPPVDVLV 252
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ- 307
+L + + Q+I L KQLS L +D + L DE L+
Sbjct: 253 ATPGVLWKALKGQLISL--------KQLSY---------LVLDEAD----TLLDESFLEL 291
Query: 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKT 367
EYI ++ + D ++ + Q + V AT P
Sbjct: 292 VEYILEKSHIAEDPA-------------------DLKDPFNPKAQLVLVGATFPAG---- 328
Query: 368 AGAVLKQMF-PDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE--RLEFGAE 423
G +L ++ PD+ I+ + LH P +K+ ++ + +V L++ +K+ R
Sbjct: 329 VGQLLSKVASPDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVTELVQILKQHDRAYRTGP 388
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDA 482
+ +VF ++ V + IL I+ + RA FQE + +CTD
Sbjct: 389 SGTVLVFCSSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQGFQEGSRDILLCTDI 448
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-NRDLVDTIR 539
A+RG+D +V V+ DF + D++HR GR R G G V S T + LV I
Sbjct: 449 ASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIE 508
Query: 540 RAAK 543
AA+
Sbjct: 509 LAAR 512
>gi|403417986|emb|CCM04686.1| predicted protein [Fibroporia radiculosa]
Length = 755
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/472 (22%), Positives = 181/472 (38%), Gaps = 107/472 (22%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG + ++ + GF P+ +Q + LSG+DVV A+TGSGKT S+ +P +
Sbjct: 328 SFDELGFPEYIMSTIRAQGFPAPTPIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAML 387
Query: 145 KL----CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+ A GD P A L+L P L Q+ + +++ +R
Sbjct: 388 HINAQPLLASGDG-----------PIA--LILAPTRELAVQIQQECTKFGSNSK---IRN 431
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
A+ GG PK + + RGV+ V+ ++ Q
Sbjct: 432 TAIYGGA----------------------PKGPQIRDLQRGVEIVIATPGRLIDMLETQK 469
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320
+R + DE RM + G E +
Sbjct: 470 TNLRRVTYLVMDEA--DRMLDMGFEPQI-------------------------------- 495
Query: 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDAD 380
R++ + +Q + +AT P + +K A LK F +
Sbjct: 496 --------------------RKIVGQIRPDRQTLMFSATWPKDVQKLANDFLKD-FIQVN 534
Query: 381 WISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAV 440
S HN + +EV D + + + +K + E ++ ++F T +
Sbjct: 535 IGSMELTANHN---IAQIVEVCSDFEKRSKL--IKHLDQISQENAKVLIFVGTKRVADDI 589
Query: 441 TKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQAD 499
TK L+ G H D ER L F+ + + + TD A+RG+D+ +V +VI D
Sbjct: 590 TKYLRQDGWPALAIHGDKEQRERDWVLSEFKAGRSPILIATDVASRGLDVKDVGYVINYD 649
Query: 500 FATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
F + D++HR+GRT RAG G + +T N R+L+ +R A + P
Sbjct: 650 FPNNCEDYIHRIGRTGRAGMKGTSYTYFTTDNAKSARELISILREAKAIVPP 701
>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Ogataea parapolymorpha DL-1]
Length = 747
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 115/218 (52%), Gaps = 33/218 (15%)
Query: 62 AAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
A A+ SD+N S ++ +++SL LS +++AL G+ +PS +Q+AS+ L G
Sbjct: 221 AIASYFASDENSKS---HQSEHQSFQSLKLSRPILKALSALGYSKPSAIQSASIPIALLG 277
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS---LVLCPNVVL 178
KD+V A TGSGKT +Y++P+IE+L P + PS +VL P L
Sbjct: 278 KDIVAGAVTGSGKTAAYMIPIIERLLY--------------KPSKMPSTRVIVLAPTREL 323
Query: 179 CEQVVRMANALSA-DNGEPLVRAVAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKR 232
QV + + NG L +AV G Q + K PD++++TP L+++I
Sbjct: 324 AIQVADVGKKIGQFVNG--LTFGLAVGGLNLRQQEQELKKRPDIVIATPGRLIDHI---- 377
Query: 233 RRRMEF-VRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269
R + F V V+ +VFDEAD +L FQ ++ ++++
Sbjct: 378 RNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLL 415
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
SR +VF + + + + L G++ H L+ E+R K +V+F+ + +CTD A
Sbjct: 488 SRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPILICTDLA 547
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
ARG+DIP + VI D + +LHRVGRTARAG+ GL S ES++D
Sbjct: 548 ARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQD 597
>gi|402218296|gb|EJT98373.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 44/254 (17%)
Query: 68 VSDKNGSSDTF--------FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119
V+ +NG++D AD NVT+ SLGL + L+ A + F RP+ +QAA++ P L
Sbjct: 15 VTSQNGTADAQADSATIAPVADPNVTFSSLGLIEPLVDACKQLNFKRPTPIQAAAIPPAL 74
Query: 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179
GKD++ AETGSGKT ++ +P+++KL +P P +VL P L
Sbjct: 75 EGKDIIGLAETGSGKTAAFALPILQKLW------------HDPKP--FFCVVLAPTRELA 120
Query: 180 EQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRR 233
Q+ + AL + G VR + GG Q + K P ++V+TP L ++++ +
Sbjct: 121 YQISQQFEALGSTIG---VRCAVLIGGVKMVPQAVALSKRPHIVVATPGRLQDHLENTKG 177
Query: 234 RRMEFVRGVKYVVFDEADMLL---CGSFQNQVIRLI----NMFRFD---EKQLSRMNESG 283
+ RG+KY+V DEAD LL G + +++ I N F +++++ +
Sbjct: 178 FSL---RGLKYLVMDEADRLLDLDFGPIIDTLLKAIPRQRNTMLFSATMTTKVAKLQRTS 234
Query: 284 VEKPLEMDNSSLTQ 297
+ P++++ SS Q
Sbjct: 235 LRNPVKVEVSSKYQ 248
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAAR 485
T+VF T+ +T L+ G H D+S ++R + F+ E G + V TD A+R
Sbjct: 281 TIVFVRTIHDATKLTLALRNLGFPAIPLHGDISQDKRLGAISRFKAEPGAILVATDVASR 340
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
G+D+P V VI D T++ D++HRVGRTARAG+ G S+ T+ + +L+ I
Sbjct: 341 GLDMPKVDAVINYDLPTNSKDYIHRVGRTARAGRAGKAISIVTQYDVELLQRI 393
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER
Sbjct: 332 ENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEER 388
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+ + G VCTD AARG+D+ V HVI DF +++D+LHR GRTAR G
Sbjct: 389 VENLNKFRNEEGDCPTLVCTDLAARGLDL-EVDHVIMFDFPKNSIDYLHRTGRTARMGAK 447
Query: 521 GLVTSLYTESNRDLVDTIRRAAK 543
G VTSL T+ + L I A K
Sbjct: 448 GKVTSLVTKKDVPLATRIEDAMK 470
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ A+ +G +P+ +Q V VLSG VV+ + TGSGKT +YL+PL++
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 152 LL---RHDEATLGMSLKPRRPRA--VVLCPTRELTEQVFRVAKSISH---HARFRSTMVS 203
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 204 GGTRLRPQEDSLNMPVDMVVGTPGRILDHI-----KEGNIVYGDIKYLVLDEADTMFDQG 258
Query: 258 FQNQVIRLI 266
F + + +
Sbjct: 259 FGEDIRKFL 267
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 22/225 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +T+ SL L++ L+RA+ ++G+ P+ +QA ++ V+ G D++ AA+TG+GKT + +
Sbjct: 2 DSQITFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTL 61
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ +L N +++P PRA L+L P L QV S +R+
Sbjct: 62 PILHRLLN------NPQQNRKPGRPRA--LILAPTRELAAQVEESVRLYSQHT---RLRS 110
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + GG Q + KP D++V+TP LL+++ R+R + GV+ +V DEAD +L
Sbjct: 111 MVMFGGVNINPQFHALRKPLDILVATPGRLLDHV----RQRTVDLTGVEILVLDEADRML 166
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
F + ++I++ D + L + + ++ E+ SL PD
Sbjct: 167 DMGFIRDIRKIISLMPVDRQTLL-FSATFSDEIRELARGSLNNPD 210
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++ +VF T + + L G+ H + S R + L F+ K V V TD A
Sbjct: 250 NQVLVFCRTKHGANRLAEKLSKDGMAAEALHGNKSQAARTRALAGFKNGKVVVLVATDIA 309
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
ARG+DI + +V+ + D++HR+GRT RAG G+ SL S L+ I R +
Sbjct: 310 ARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGSEGVALSLVDRSEMRLLKQIERMTR 369
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER
Sbjct: 351 ENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEER 407
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+ + G VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G
Sbjct: 408 VENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAK 466
Query: 521 GLVTSLYTESNRDLVDTIRRAAK 543
G VTSL + + L I A K
Sbjct: 467 GKVTSLVAKKDVTLATRIEEAMK 489
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 171 LLRR---DEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSISH---HARFRSTMVS 222
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 223 GGSRIRPQEDSLNMPVDMVVGTPGRILDHI-----KDGNMVYGDIKYLVLDEADTMFDQG 277
Query: 258 F 258
F
Sbjct: 278 F 278
>gi|219116929|ref|XP_002179259.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409150|gb|EEC49082.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 476
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 21/183 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K+LGLSD + + + GF P+ VQ S+ VL+G D V+ A TGSGKT ++L+PL+EK
Sbjct: 16 FKALGLSDEVYKGIIRMGFRMPTPVQRKSLPVVLTGVDTVVMARTGSGKTCAFLIPLLEK 75
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L +N N + ++L P L +Q +R+ N L+AD +R++ + G
Sbjct: 76 LLDT-PKGQNGNHVR--------GVILSPTRELSQQTLRVMNKLAADTD---IRSIGIHG 123
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G+G KPDVI++TP L +++ ++ G + DEAD LL F
Sbjct: 124 GEGMEKQFNQLASKPDVIIATPGRLAHHLSEIPDFKLA---GCAMCILDEADRLLEMGFS 180
Query: 260 NQV 262
Q+
Sbjct: 181 MQI 183
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 404 DTQVDALIEAVKERLEFGAE--TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D + ++ +KE E A+ T +++FA T V VT +L AG + + L E
Sbjct: 247 DAALLHVLHHIKEDQEEHADSRTGLSLIFAATRHHVEYVTTLLIAAGFDAVMIYGTLDQE 306
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
R L F+ K + V TD AARGID+P + HVI F +S F+HR GR ARAG+
Sbjct: 307 ARKINLAAFRSGKRPILVTTDVAARGIDVPLIDHVIHYHFPSSPKLFVHRSGRAARAGRI 366
Query: 521 G 521
G
Sbjct: 367 G 367
>gi|57087375|ref|XP_546867.1| PREDICTED: probable ATP-dependent RNA helicase DDX28 [Canis lupus
familiaris]
Length = 527
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 129/492 (26%), Positives = 209/492 (42%), Gaps = 94/492 (19%)
Query: 63 AAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLS 120
A V + +N SS+ FAD LGL ++RAL+++ RP+ VQ++++ P+L
Sbjct: 108 AQHEVPALRNLSSEGSFAD-------LGLEPPVLRALKDAAPEVLRPTTVQSSTIPPLLR 160
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180
G+ ++ AAETGSGKT YL+PL+++L G + +S P LVL P+ L E
Sbjct: 161 GRHILCAAETGSGKTLGYLLPLLQRLLGRPGLNPHST-------PAPRGLVLVPSRELAE 213
Query: 181 QVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVR 240
QV +A L G +R + GG G +N I R++ +
Sbjct: 214 QVRAVAQPLGISLG---LRVRELGGGHG----------------MNRI------RVQLSK 248
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
V L + ++ ++ L KQLS L +D + L
Sbjct: 249 QPPADVLVATPGALWKALKSHLVSL--------KQLSF---------LVLDEAD----TL 287
Query: 301 QDEENLQ-DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAAT 359
DE L+ +YI + + D D ++ + Q + V AT
Sbjct: 288 LDESFLELVDYILQKSHIAEDPD-------------------DLKDPFNPKAQLVLVGAT 328
Query: 360 LPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE-- 416
P + + + K PD+ I+ + LH P +++ ++ + +V L++ +K+
Sbjct: 329 FP---EGVSQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKGAEKVTELVQILKQHD 385
Query: 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG- 475
R + +VF N+ V + IL I+ + RA FQ KG
Sbjct: 386 RAYRTGPSGTILVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQCFQ-KGSR 444
Query: 476 -VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTES-N 531
+ +CTD A+RG+D +V V+ DF + D++HR GR R G G V S T +
Sbjct: 445 DILLCTDIASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWD 504
Query: 532 RDLVDTIRRAAK 543
LV I AA+
Sbjct: 505 VSLVQKIELAAR 516
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER
Sbjct: 336 ENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEER 392
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+ + G VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G
Sbjct: 393 VENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAK 451
Query: 521 GLVTSLYTESNRDLVDTIRRAAK 543
G VTS+ + + L I A K
Sbjct: 452 GKVTSIVAKKDVALATRIEEAMK 474
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++
Sbjct: 96 SFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 155
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 156 LLRR---DEAMLGMSMKPRRPRA--VVLCPTRELTEQVYRVAKSISH---HARFRSTMVS 207
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 208 GGTRLRPQEDSLNMPVDMVVGTPGRILDHI-----KDGNMVYGDIKYLVLDEADTMFDQG 262
Query: 258 F 258
F
Sbjct: 263 F 263
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q I V+AT+ K ++ + F + + + + +I+++ + +++AL
Sbjct: 310 QTILVSATM----TKGVQKLIDEEFEGIEHLRTSTFQKRIATARHDFIKLSGSENKLEAL 365
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER + L F
Sbjct: 366 LQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVENLNKF 422
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ + G VCTD AARG+D+ V HVI DF +++D+LHR GRTAR G G VTSL
Sbjct: 423 RNEEGDCPTLVCTDLAARGLDL-EVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVTSLI 481
Query: 528 TESNRDLVDTIRRAAK 543
+ + L I A K
Sbjct: 482 AKKDVGLATRIEDAMK 497
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 98 ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157
A+ +G +P+ +Q V VLSG VV+ + TGSGKT +YL+PL++ L D
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQLL---RHDEATLG 188
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIG 212
+P PRA +VLCP L EQV R+A ++S R+ V GG Q +
Sbjct: 189 MSMKPRRPRA--VVLCPTRELTEQVFRVAKSISH---HARFRSTMVSGGTRLKPQEDSLN 243
Query: 213 KP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSFQNQVIRLI 266
P D++V TP +L++I + V G +KY+V DEAD + F + + +
Sbjct: 244 MPVDMVVGTPGRILDHI-----KEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFL 294
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 40/254 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
DD T+KSLG+ D L A + G+ PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 11 DDKTTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFAL 70
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ AL D+ P R +L+L P L Q+ AL + G V+
Sbjct: 71 PILQ----ALLDN----------PQRLFALILTPTRELAFQISEQCEALGSGIG---VKC 113
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 114 AVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKGFSL---RTLKYLVMDEADRIL 170
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +L+ + F F K++ ++ + ++ P++++ ++ Q E
Sbjct: 171 NMDFEKEVDKLLKVIPKERRTFLFSATMTKKVQKLQRASLQAPVKVEVAT----KYQTVE 226
Query: 305 NLQDEYISDEGNFE 318
LQ Y+ F+
Sbjct: 227 KLQQSYLFIPSKFK 240
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF T + V VT +L+ G++ H +S +R L F+ K + V TD A+RG
Sbjct: 257 MVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRG 316
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR--AAKL 544
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I A KL
Sbjct: 317 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLIAKKL 376
Query: 545 GQ 546
Q
Sbjct: 377 PQ 378
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 7/143 (4%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER
Sbjct: 335 ENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEER 391
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+ + G VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G
Sbjct: 392 VENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAK 450
Query: 521 GLVTSLYTESNRDLVDTIRRAAK 543
G VTS+ + + L I A K
Sbjct: 451 GKVTSIVAKKDVALATRIEEAMK 473
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++
Sbjct: 95 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 154
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 155 LLRR---DEAMLGISMKPRRPRA--VVLCPTRELTEQVYRVAKSISH---HARFRSTMVS 206
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 207 GGTRLRPQEDSLNMPVDMVVGTPGRILDHI-----KDGNMVYGDIKYLVLDEADTMFDQG 261
Query: 258 F 258
F
Sbjct: 262 F 262
>gi|407853529|gb|EKG06479.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 712
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 129/495 (26%), Positives = 206/495 (41%), Gaps = 87/495 (17%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
+NG+ + D V W LGL L+RA+ + GF P+ VQ ++ VL G DV A T
Sbjct: 50 RNGAGNQ--TQDQVMWIELGLCKALVRAVTHIGFLSPTPVQVQAIPAVLGGSDVCARAVT 107
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM-ANAL 189
GSGKT ++L+PL+ L T + + K S++L P L Q M L
Sbjct: 108 GSGKTAAFLLPLLHILLTRAPQKQLHSGGKRRF---IRSIILLPTRELGMQCQYMLQQIL 164
Query: 190 SADNGEPLVRAVAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEF-VRGVK 243
+ G L A+A+ G Q + PD++++TP L++ + + V GV+
Sbjct: 165 THTTG--LTVALAIGGIAQTAQEAALESIPDILIATPGRLVDLLHNYKGAHGSLDVSGVE 222
Query: 244 YVVFDEADMLLCGSFQNQVIRLI--------NMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
VV DE D +L + ++QV+ +I + F S ++E E E +N +
Sbjct: 223 MVVLDECDKMLTVTLKDQVVDIIQRVPEETRQVLMFSATMTSEVDEFAKEHLFEPENVDV 282
Query: 296 TQPDLQDEENLQDEYI-----SDEG------------NFEGDSDVEGLTEETKSGSIKKK 338
LQ + L+ +++ SD + EG+ ++EG E+ K + KK+
Sbjct: 283 GHVALQSK--LRQQFVRIRLPSDATTTTRTTAPLRGCDNEGNGEMEG-DEKEKVDNKKKR 339
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
RSK+ A + ++ +T A+ H ++K ++
Sbjct: 340 I---------RSKRLRDAAKSEAVDSHETEDAL-----------------EHLTKIKSRF 373
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ L G +T+VF + + + G +
Sbjct: 374 LVA----------------LCLGYFREKTIVFTRYRTTAHRLHLLFTALGFTSAELQGNQ 417
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
EER +L F G V TD A+RG+DI VS V+ D + ++HRVGRTAR
Sbjct: 418 LQEERFASLKKFA-SGEVQYLFSTDVASRGLDIKGVSTVVNFDLPPTLTAYIHRVGRTAR 476
Query: 517 AGQYGLVTSLYTESN 531
G G SL ES
Sbjct: 477 IGGSGTAVSLVEESK 491
>gi|328771085|gb|EGF81125.1| hypothetical protein BATDEDRAFT_16201 [Batrachochytrium
dendrobatidis JAM81]
Length = 588
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 18/185 (9%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
+ L R+ RA+ GF +P++VQA ++ L GKD++ A TGSGKT +Y +P+I+K+ T
Sbjct: 1 MDLDPRIQRAVAKLGFVQPTLVQAKAIPLALEGKDILARARTGSGKTAAYCIPIIQKILT 60
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
++ PP +L+L P L EQV R L+ + VR+V + G
Sbjct: 61 F-------KTNNASAPPAIRALILVPTRELAEQVHRHIQQLTMYATKE-VRSVNISTGDV 112
Query: 209 WPIGK-------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
G+ PD+IV+TPA ++ +I R +E V+ +V DEAD++L
Sbjct: 113 SVAGQRSILAETPDIIVATPAKIMAHI---RENNLELKETVESMVIDEADLILSYGHDED 169
Query: 262 VIRLI 266
V +L+
Sbjct: 170 VKKLL 174
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 18/198 (9%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V + LGLSD ++ A++ G P+ VQA + VL+G++VV+A+ TGSGKT +YL+P++
Sbjct: 181 VRFNDLGLSDEVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIV 240
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L + + S K R ++VLCP L EQV R+A +L RA V
Sbjct: 241 QAL-----RRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCH---HARFRAAMV 292
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K D+IV+TP LL +I+ + M + +KYVV DEAD +
Sbjct: 293 GGGSRMKTQEDSLNKAIDLIVATPGRLLMHIE---QGNMAY-GDLKYVVLDEADTMFDKG 348
Query: 258 FQNQVIRLINMFRFDEKQ 275
F +V + +N R +Q
Sbjct: 349 FGVEVRKFLNPLRNRSRQ 366
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 34/201 (16%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q + V AT+ K ++L + FP I + LH +K +E +
Sbjct: 373 QTVLVTATI----TKAVQSLLDEEFPGIKHIYTSTLH-------KKILEPEL-------- 413
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF- 470
A+ R MVF NT+ + AV L G YH + +ER + L F
Sbjct: 414 ----------AKGKRVMVFCNTLGSCRAVDHFLSERGTTSVNYHGAIPADERVENLEKFK 463
Query: 471 ---QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
++ VCTD AARG+D+ HVI DF + +D+LHR GRTAR G+ G+VTSL
Sbjct: 464 NADEDSLPALVCTDLAARGLDLV-CDHVINFDFPLNPIDYLHRTGRTARMGRKGMVTSLV 522
Query: 528 TESNRDLVDTIRRAAKLGQPV 548
T+ ++ L + A + G+ +
Sbjct: 523 TKRDQTLAIQLEEAMRKGESL 543
>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 521
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 20/180 (11%)
Query: 379 ADWISGNYLHFH--------NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVF 430
+D++S N +H H N R+++ + + + + +E +KE ++ + ++F
Sbjct: 282 SDFLS-NPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVEILKEN-----QSKKIIIF 335
Query: 431 ANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGGVFVCTDAAARGID 488
A T V ++ LK+ I C H D + +ER L F+ GGV V TD AARG+D
Sbjct: 336 AKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGGVLVATDVAARGLD 395
Query: 489 IPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAAKL 544
+ ++ V+ DF D++HR+GRTAR + G+ + +T+ NR DLV+ I+ +A++
Sbjct: 396 VTDIDLVLNYDFPGDIEDYVHRIGRTARGEKTGVAITFFTDENRFLASDLVEVIKNSAQV 455
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 52/308 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VT++ L L ++ ++ + + P+ +Q+ S+ L G D+V A+TGSGKT S+L+P +
Sbjct: 85 VTFEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASFLIPAL 144
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ SEN LVL P L Q +A G + V +
Sbjct: 145 MHISAQRKISENDG---------PIVLVLSPTRELALQTDEVAAQFCVKMG---YKHVCI 192
Query: 204 CGGQG--WPIGK----PDVIVSTPAALLNNI-----DPKRRRRMEFVRGVKYVVFDEADM 252
GG+ I K P+++ +TP L++ + +P R ++V DEAD
Sbjct: 193 YGGEDRHRQINKLRFHPEIVTATPGRLIDFLQSGVFNPNR---------ANFLVLDEADR 243
Query: 253 LLCGSFQNQVIRLI-------NMFRFDE---KQLSRMNESGVEKPLEMDNSSLTQPDLQD 302
+L F+ Q+ +I F F K++ ++ + P+ M + +L
Sbjct: 244 MLDMGFEPQIRAIIASLTKDRETFMFSATWPKEIRQLASDFLSNPIHM---HVGGEELAT 300
Query: 303 EENLQDEYISDEGNFEGDSDVEGLTE-ETKSGSIKKKDWRRVRK--NYQRSKQYIFVAAT 359
E +Q + + + +G+ VE L E ++K I K R V++ ++ +SK
Sbjct: 301 NERIQQNVLLLQEHEKGEKCVEILKENQSKKIIIFAKTKRTVQQLSDFLKSKSI----RC 356
Query: 360 LPINGKKT 367
L I+G KT
Sbjct: 357 LSIHGDKT 364
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q I V AT+ K ++ + F + + LH + +I+++ + +++AL
Sbjct: 312 QTILVTATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEAL 367
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ +R MVF NT+++ AV L I YH ++ ++R + L F
Sbjct: 368 LQVLEPSL---AKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVENLKKF 424
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G G VTSL
Sbjct: 425 KSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLV 483
Query: 528 TESNRDLVDTIRRAAK 543
+ + L I A +
Sbjct: 484 GKKDNILATRIEEAIR 499
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 43 LRVRFLRLNQWKGRPFRG-FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALEN 101
LR R L+ + K +P R + + D+ S+ + +++ LGL++ ++ A+
Sbjct: 78 LRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKKKKLDESFEELGLNEEVMGAVRE 137
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
G PS +Q + VL GK V++ + TGSGKT +YL+PL++ L D E +
Sbjct: 138 MGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLLRR---DEELFGRLMK 194
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP-D 215
P PRA +VLCP L EQV R++ ++S R+ V GG Q + P D
Sbjct: 195 PRRPRA--VVLCPTRELSEQVFRVSKSISH---HARFRSTMVSGGGRLRPQEDSLSNPID 249
Query: 216 VIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSFQNQVIRLINMFR 270
++V TP +L +I+ V G +KY+V DEAD + F + + I +
Sbjct: 250 MVVGTPGRVLQHIEAG-----NMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q I V AT+ K ++ + F + + LH + +I+++ + +++AL
Sbjct: 312 QTILVTATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEAL 367
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ +R MVF NT+++ AV L I YH ++ ++R + L F
Sbjct: 368 LQVLEPSL---AKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVENLKKF 424
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G G VTSL
Sbjct: 425 KSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLV 483
Query: 528 TESNRDLVDTIRRAAK 543
+ + L I A +
Sbjct: 484 GKKDNILATRIEEAIR 499
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 43 LRVRFLRLNQWKGRPFRG-FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALEN 101
LR R L+ + K +P R + + D+ S+ + +++ LGL++ ++ A+
Sbjct: 78 LRTRHLKESAPKTKPTRNTLSQSVGSAEDEMKKSEKKKKKLDESFEELGLNEEVMGAVRE 137
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
G PS +Q + VL GK V++ + TGSGKT +YL+PL++ L D E +
Sbjct: 138 MGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLLRR---DEELFGRLMK 194
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP-D 215
P PRA +VLCP L EQV R++ ++S R+ V GG Q + P D
Sbjct: 195 PRRPRA--VVLCPTRELSEQVFRVSKSISH---HARFRSTMVSGGGRLRPQEDSLSNPID 249
Query: 216 VIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSFQNQVIRLINMFR 270
++V TP +L +I+ V G +KY+V DEAD + F + + I +
Sbjct: 250 MVVGTPGRVLQHIEAG-----NMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
>gi|156399511|ref|XP_001638545.1| predicted protein [Nematostella vectensis]
gi|156225666|gb|EDO46482.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 150/365 (41%), Gaps = 92/365 (25%)
Query: 86 WKS---LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
W+S LGL + L+ L PS +Q ++ V G + VI AETGSGKT YL+P+
Sbjct: 25 WRSFGDLGLHENLVARLRALKIQYPSEIQTKALPIVSVGGNTVINAETGSGKTLCYLLPI 84
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ +L T N T P A L+L P V LC QV + +++ P + +
Sbjct: 85 VNRLLT--------NPSISRTSPYA--LILLPTVELCHQVDEVLKSIAG----PDITSCV 130
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
V + P +I++ P ALL+ RM+ + VK VV DEAD L ++ V
Sbjct: 131 VHHDSRLHVNHP-IIMAIPGALLS-------YRMQSLDPVKVVVTDEADFLTTSGGKD-V 181
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322
R++N ++ E + V K L+
Sbjct: 182 WRVLNYMKYGEHIKMKKKNYAVTKRLDKRKR----------------------------- 212
Query: 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382
EGLT+ +Q++FVAATLP GKK + VLK P+ I
Sbjct: 213 -EGLTD----------------------RQFVFVAATLPSRGKKASYNVLKHWLPNCQMI 249
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALI----EAVKERLEFGAETS----------RTM 428
+ H P + ++ V + +++ L+ +++ LE E R +
Sbjct: 250 NSEIAHQKLPTVDFEYRRVENEKKLNELLVCLDSLLRDSLEHENEMEDQKKNTNRKLRVL 309
Query: 429 VFANT 433
VFANT
Sbjct: 310 VFANT 314
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 451 CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C H + L +R +L F+ + V +CTD A+RG+DIPNV+HVIQ DFAT A LH
Sbjct: 391 CAELHGHVPLHQRVLSLEKFKNGEIQVLICTDIASRGLDIPNVTHVIQLDFATDAAQMLH 450
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
RVGRTARAG +G V + T+ N +LV+ +R
Sbjct: 451 RVGRTARAGSHGKVVNFITKDNEELVNALR 480
>gi|195132612|ref|XP_002010737.1| GI21708 [Drosophila mojavensis]
gi|193907525|gb|EDW06392.1| GI21708 [Drosophila mojavensis]
Length = 566
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 25/198 (12%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A + + + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y
Sbjct: 4 AKELLQFHELELDQRILKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYA 63
Query: 140 VPLIEK-LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+PLI+K L + L SE S +LVLCP LC Q ++ LS G+ +V
Sbjct: 64 LPLIQKILNSKLNSSEQCVS----------ALVLCPTKELCRQSRQVIEQLSDSCGK-VV 112
Query: 199 RAVAVCGG------QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
R + G Q + +PD++VSTPA +L + D + ++ ++ +V DEAD
Sbjct: 113 RVTDIAGSSNDAATQRHALAERPDIVVSTPAKILAHAD------IVDLKHIETLVVDEAD 166
Query: 252 MLLCGSFQNQVIRLINMF 269
++ ++ +LI +
Sbjct: 167 LIFAFGYEKDFKKLIKLL 184
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQM----FPDADWISGNYLHFHNP 392
+KD++++ K Q + V+AT+ + + G L + D +S + L H
Sbjct: 174 EKDFKKLIKLLPPIYQAVLVSATISDDVARMKGLCLHNAVTLKLEEPDLVSLDQLSHHRI 233
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
+E + A++ A+ L+ ++++F N VD Y V L+ GI
Sbjct: 234 LAEE--------NEKPAILYAL---LKLMLIQGKSIIFVNNVDRCYKVRLFLEQFGIRSC 282
Query: 453 CYHKDLSLEERAKTLVNFQEKGGVF---VCTD------------------------AAAR 485
+ +L R T+ F GV+ + +D +A+R
Sbjct: 283 VLNSELPANIRIHTINQFNR--GVYDIIIASDEHLLEKPAGKTKNKGGQQKNDHESSASR 340
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
GID V++VI DF ++HR GRTAR G V S +
Sbjct: 341 GIDFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVS 383
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 126/246 (51%), Gaps = 40/246 (16%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+N+TWK LG+ D L +A E+ + P+ +Q ++ + GKDV+ AETGSGKT ++ +P
Sbjct: 22 ENLTWKDLGIVDSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALP 81
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++ L EN P R +L+L P L Q+ AL A G V+ V
Sbjct: 82 ILQALL------EN--------PQRYFALILTPTRELAFQISEQFEALGASIG---VKCV 124
Query: 202 AVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG Q + KP +I++TP L+++++ + + R +K++V DEAD +L
Sbjct: 125 VIVGGMDMMTQSLMLAKKPHIIIATPGRLVDHLENTKGFNL---RSLKFLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F+ +V +++ + + K++ ++ + ++ P++++ S+ Q E
Sbjct: 182 MDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLQNPVKVEVST----KYQTVEK 237
Query: 306 LQDEYI 311
LQ Y+
Sbjct: 238 LQQYYV 243
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L++ G H +S +R L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G+ + T+ + +L I +
Sbjct: 327 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQ 380
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D TW LGL D L +A E + +PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 16 DKPATWSDLGLVDVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L EN P R +L+L P L Q+ AL A+ G V+
Sbjct: 76 PILQSLL------EN--------PQRYFALILTPTRELAFQISEQIEALGANIG---VKC 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP LL++++ + + + +KY+V DEAD +L
Sbjct: 119 AVIVGGMDMMSQALILAKKPHILIATPGRLLDHLENTKGFNL---KALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + F F K++ ++ + + P++++ S+ Q E
Sbjct: 176 NMDFEVEVDKILKVIPRERHTFLFSATMTKKVKKLQRACLRDPVKVEVST----KYQTVE 231
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 232 KLQQYYI 238
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ K R + +AT+ KK A L+ P +S Y +L++ +I +
Sbjct: 185 KILKVIPRERHTFLFSATMTKKVKKLQRACLRD--PVKVEVSTKYQTVE--KLQQYYIFI 240
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
V + L+ + E + M+F +T + +L+ G+ H +S
Sbjct: 241 PVKFKDVYLVHILNE-----MAGNSFMIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQN 295
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V VI D T + D++HRVGRTARAG+
Sbjct: 296 KRLAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRS 355
Query: 521 GLVTSLYTESNRDLVDTIRR 540
G + T+ + +L I +
Sbjct: 356 GKAITFVTQYDVELYQRIEQ 375
>gi|328870114|gb|EGG18489.1| ATP-dependent RNA helicase [Dictyostelium fasciculatum]
Length = 1703
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 372 LKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFA 431
++ +FP+ ++ +H L++++I V + +AL+ A+K +++ R +VF
Sbjct: 1516 VQSLFPNVVKLATPTIHKSLNTLEQQFISVQGGDKHEALMRAIKP-----SQSKRVLVFC 1570
Query: 432 NTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIP 490
N+ ++ + L G H ++ + R+K F + + V TD A+RGID+
Sbjct: 1571 NSPNSCRSTEYFLTENGFNATSLHGEIPPKTRSKNWRQFLNNEKSILVSTDIASRGIDVS 1630
Query: 491 NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
+V HVI DF ++ +D+LHR+GRTARAG+ G VT + + ++ L + I+ A K G
Sbjct: 1631 SVDHVIIFDFPSNPIDYLHRIGRTARAGKKGTVTCIIAKKDQVLANAIQAALKRG 1685
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 67 VVSDKNGSSDTFFADDNVT---WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL-SGK 122
V +K+ D F D T + LG+S L+ L+ PS++Q ++ ++ +
Sbjct: 1218 VFQNKSTYVDGFVPDQKGTGSAFARLGVSKNLMGGLKEMDISIPSLIQQLAIPEIIKANN 1277
Query: 123 DVVIAAETGSGKTHSYLVPLIEKL 146
D++ ++TG+GKT +YL+P+I+ +
Sbjct: 1278 DIIFVSQTGTGKTLTYLLPIIQNI 1301
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R K+ + Q + V AT+ K ++ + F + + LH + +I++
Sbjct: 301 RASKSDDQGFQTVLVTATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 356
Query: 402 T-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++
Sbjct: 357 SGSENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPA 413
Query: 461 EERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
E+R + L F+ + G VCTD AARG+D+ +V HVI DF +++D+LHR GRTAR
Sbjct: 414 EQRVENLKKFKTEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 472
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G G VTSL + + L I A +
Sbjct: 473 GAKGKVTSLVAKKDLLLATRIEEAIR 498
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGLS+ ++ A+ +G P+ +Q V VL G+ VV+ + TGSGKT +Y++PL++
Sbjct: 120 SFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ 179
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D S +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 180 LLRR---DEALSGVLMKPRRPRA--VVLCPTRELSEQVFRVAKSISH---HARFRSTMVS 231
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L +I+ V G +KY+V DEAD +
Sbjct: 232 GGGRLRPQEDSLNIPIDMVVGTPGRVLQHIE-----EGNMVYGEIKYLVLDEADTMFDRG 286
Query: 258 F 258
F
Sbjct: 287 F 287
>gi|427789491|gb|JAA60197.1| Putative atp-dependent rna helicase ddx47 [Rhipicephalus
pulchellus]
Length = 465
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 126/255 (49%), Gaps = 40/255 (15%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+++NVT+KSLG+ D L A E + P+ +Q ++ L G+DV+ AETGSGKT S+
Sbjct: 21 SEENVTFKSLGVVDVLCEACEQLKWKAPTKIQREALPVALQGRDVIGLAETGSGKTASFA 80
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L TP R +LVL P L Q+ AL A G V+
Sbjct: 81 LPILQALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGASIG---VK 123
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ + GG Q + KP VI++TP L+++++ + + + +KY+V DEAD +
Sbjct: 124 SAVIVGGIDMMTQALTLAKKPHVIIATPGRLVDHLENTKGFNL---KSLKYLVMDEADRI 180
Query: 254 LCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
L F+ +V +++ + + K++ ++ + + P++++ SS Q
Sbjct: 181 LNMDFEEEVDKILRVIPRERRTYLYSATMTKKVQKLQRASLRDPVKVEVSS----KYQTV 236
Query: 304 ENLQDEYISDEGNFE 318
E L Y+ F+
Sbjct: 237 EKLMQYYLFIPAKFK 251
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T +L+ G H + +R L F+ K + + TD A+RG
Sbjct: 268 MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALTKFKSKNRSILIATDVASRG 327
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 328 LDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQ 381
>gi|442762935|gb|JAA73626.1| Putative atp-dependent rna helicase, partial [Ixodes ricinus]
Length = 429
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 127/264 (48%), Gaps = 40/264 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ VT+KSLG+ D L A E + P+ +Q S+ L GKDV+ AETGSGKT S+ +
Sbjct: 22 EEEVTFKSLGIVDVLCEACEQLKWKSPTKIQKESIPLALQGKDVIGLAETGSGKTGSFAL 81
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L TP R +LVL P L Q+ AL A G V+
Sbjct: 82 PILQALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGAGIG---VKC 124
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG Q + KP V+++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 125 AVVVGGIDMMTQALTLAKKPHVVIATPGRLVDHLENTKGFSL---KALKYLVMDEADRIL 181
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + + K++ ++ + ++ P++++ SS Q E
Sbjct: 182 NMDFEEEVDKILRVIPRERHTYLYSATMTKKVQKLQRASLKDPVKVEVSS----KYQTVE 237
Query: 305 NLQDEYISDEGNFEGDSDVEGLTE 328
L Y+ F+ V L E
Sbjct: 238 KLMQYYLFIPAKFKDVYLVHLLNE 261
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T +L+ G H + +R L F+ K + + TD A+RG
Sbjct: 268 MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGALNKFKSKNRSILIATDVASRG 327
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 328 LDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 379
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
K R+ K + +Q +F +AT+P K A +LK + +S + R++++
Sbjct: 168 KAIHRIVKTLPQRRQNLFFSATMPTEIAKLAADLLK----NPAQVSVTPVAKTADRVEQQ 223
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ V + D L++ + + A+ +RT++F T V + L+ G+ H +
Sbjct: 224 VLFVETHRKRDILVDLLAD-----AKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGN 278
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S +R ++L +F+ + V TD AARGID+ V+HV+ D ++HR+GRTAR
Sbjct: 279 KSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTAR 338
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
AG G+ SL + RDL+ I R +L P
Sbjct: 339 AGAEGVAISLCDGAERDLLRNIERLTRLRLP 369
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 30/177 (16%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ +P+ +QA ++ VL+G+D+V A+TG+GKT ++ +P++ +L +N +
Sbjct: 21 GYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLA--------ANPQQ-- 70
Query: 163 TPPR--APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP------ 214
PPR A LVL P L Q+ +L G + +VAV G G P G
Sbjct: 71 -PPRGGARVLVLSPTRELASQIAESFRSL----GSEMQLSVAVVFG-GVPHGAQIRALQR 124
Query: 215 --DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269
DV+V+TP L++++D + + ++ V DE D +L F + R++
Sbjct: 125 GLDVLVATPGRLVDHLDSG----VAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTL 177
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 12/208 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + + +Q +AT+P + ++++ DA IS PR ++
Sbjct: 162 EDIEFILQQTPQQRQTALFSATMP----EAVQGLVQRYTRDAKRISIAAEQLATPRTRQT 217
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ EV ++DAL + ET S ++F T A+ + L+ G H
Sbjct: 218 YYEVMPREKLDALCRILD------VETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHG 271
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D+S +R + + F+E + + V TD AARG+DIP+V+HVI D ++HR+GRT
Sbjct: 272 DMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTG 331
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ GL +L T R ++ I RA++
Sbjct: 332 RAGRTGLAITLITPRERRMLQIIERASR 359
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 32/186 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGLS+ ++R L + G+ P+ +Q ++ +LS DV+ A+TG+GKT ++ +P+++
Sbjct: 3 TFSELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQ 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L ++ P+A L+L P L QV A A+ + V
Sbjct: 63 RL-------------RDERVPQA--LILAPTRELAMQV---AEAIYKYGKGRRISVAPVY 104
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ PI + V+V TP +++++ RR + + VV DEAD +L
Sbjct: 105 GGQ--PIYRQLRALEQGVQVVVGTPGRIMDHM----RRGTLVLDQISTVVLDEADEMLDM 158
Query: 257 SFQNQV 262
F +
Sbjct: 159 GFAEDI 164
>gi|195399387|ref|XP_002058302.1| GJ15568 [Drosophila virilis]
gi|194150726|gb|EDW66410.1| GJ15568 [Drosophila virilis]
Length = 564
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 23/193 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y +PLI
Sbjct: 8 LQFHELELDQRILKAIAQLGWVQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 67
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+K+ NS + R +LVLCP LC Q ++ L+ G+ +VR +
Sbjct: 68 QKIL---------NSKMNASEQRVSALVLCPTKELCRQSRQVIEQLAESCGK-VVRVADI 117
Query: 204 CGG------QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G Q + +PD++V+TP+ LL + D + ++ ++ +V DEAD++
Sbjct: 118 AGSSNDVATQRHALAERPDIVVATPSKLLAHAD------VVDLQHIETLVVDEADLIFAF 171
Query: 257 SFQNQVIRLINMF 269
++ RLI
Sbjct: 172 GYEKDFKRLIKHL 184
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 42/221 (19%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQM----FPDADWISGNYLHFHNP 392
+KD++R+ K+ Q + V+AT+ + + G L + D +S + L H
Sbjct: 174 EKDFKRLIKHLPPIYQAVLVSATISDDVARMKGLCLHNAVTLKLEEPDLVSLDQLS-HQR 232
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
L E + A++ A+ L+ ++++F N VD Y V L+ GI
Sbjct: 233 ILAE-------ENDKPAILCAL---LKLTLIQGKSIIFVNNVDRCYKVRLFLEQFGIRSC 282
Query: 453 CYHKDLSLEERAKTLVNFQEKGGVF---VCTD----------------------AAARGI 487
+ +L R T+ F GV+ + +D +A+RGI
Sbjct: 283 VLNSELPANIRIHTISQFNR--GVYDIIIASDEHLLEKPAGQKAKDKSQRDHESSASRGI 340
Query: 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
D V++VI DF ++HR GRTAR G V S +
Sbjct: 341 DFQGVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVS 381
>gi|405975829|gb|EKC40371.1| ATP-dependent RNA helicase DDX54, partial [Crassostrea gigas]
Length = 742
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 25/188 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q +V ++ GKDVV A TGSGKT ++L+P+ EK
Sbjct: 35 FQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGKTAAFLIPMFEK 94
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T S A L+L P L Q ++ L G +RA V G
Sbjct: 95 LKTHTAKSG------------ARGLILSPTRELALQTLKFTKELGKYTG---LRAAVVLG 139
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G PD+I++TP L++ + ++ ++ V+YVVFDEAD L FQ
Sbjct: 140 GDKMDDQFAALHENPDIIIATPGRLMHVLVEMEKK----LKSVEYVVFDEADRLFEMGFQ 195
Query: 260 NQVIRLIN 267
Q+ +I+
Sbjct: 196 EQLHEIIH 203
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAA 483
+T+VFA T V + IL AGI+ + L R + FQ K V + TD A
Sbjct: 276 QQTVVFAATKHHVEYLHMILTYAGIDSTYIYSSLDPSARKINVAKFQHKKVKVLIVTDLA 335
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
ARGIDIP + +VI +F + F+HRVGR ARAG+ G SL
Sbjct: 336 ARGIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGCAYSL 378
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K KQ +F +AT+P + + KQ D I + N + +
Sbjct: 167 DIERIFKMTPPKKQTLFFSATMPPEITR----LTKQFLKDPVRIEASRPATTNENITQLM 222
Query: 399 IEV-TVDTQVD-----ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
++V + D + ALIE K ++E G +VF N V V K LK+ G +
Sbjct: 223 VKVPSSDPKAKRLALRALIE--KAQIETG------IVFCNRKTEVDVVAKSLKSHGFDAA 274
Query: 453 CYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H DL +R KTL F++ + V +D AARG+DIP VSHV D A D++HR+
Sbjct: 275 AIHGDLDQSQRTKTLAAFRDGSLKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRI 334
Query: 512 GRTARAGQYGLVTSLYTESNRDLVDTI 538
GRT RAG+ G+ L T ++ D +
Sbjct: 335 GRTGRAGRSGVTYMLVTPADDKGFDKV 361
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS ++A+ ++G+ + +QAA++ L+G+DV+ A+TG+GKT ++ +PLI+K
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC- 204
L + PRA LV+ P L +QV + G L A+ +
Sbjct: 64 LMNGRAKARM---------PRA--LVIAPTRELADQVASSFEKYA--KGTKLSWALLIGG 110
Query: 205 ---GGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G Q + + DV+++TP LL++ + R + GV+++V DEAD +L F
Sbjct: 111 VSFGDQEKKLDRGVDVLIATPGRLLDHFE----RGKLLMTGVQFLVVDEADRMLDMGFIP 166
Query: 261 QVIRLINM 268
+ R+ M
Sbjct: 167 DIERIFKM 174
>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 440
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 12/193 (6%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQ--VD 408
+Q I ++ATL G G V K + D I + F P + D+Q D
Sbjct: 178 RQVIMLSATLKHKG---LGGVAKDLLRDPQTIEVS--EFRQPHSSIHHQRILADSQEHKD 232
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
L+ A+ ++ F +R +VFAN + +L G+ C C H ++S EER +
Sbjct: 233 KLLCALMDKGGF----TRALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMT 288
Query: 469 NFQEKGGVFVC-TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F++ VC +D AARG+D+ ++ V+ D D+LHR GRT RAG GL SL
Sbjct: 289 QFRDSKVDMVCASDVAARGLDVKDIDLVVNYDLPQKGDDYLHRTGRTGRAGATGLAISLV 348
Query: 528 TESNRDLVDTIRR 540
+ +L+ +I+R
Sbjct: 349 SGLEWNLMVSIQR 361
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 52/257 (20%)
Query: 93 DRLIR-ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALG 151
DR +R L+ + + + VQ + L G D+ ++AETGSGKT +YL+P ++++ +A
Sbjct: 8 DRGLRLGLDALEYEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRILSA-- 65
Query: 152 DSENSNSDKEPTPPRAPSL--VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
P +A +L VL P L QV + L + + A A+ GG +
Sbjct: 66 ----------PINRKAGALAVVLVPTRELARQVQKNCRDLMQ---KTQLGAQAITGGADF 112
Query: 210 PIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
+ P++I++TP LL + + + + ++ ++ DEAD +L F++ V+
Sbjct: 113 KYQRALLRKNPELIIATPGRLLEHCE----KGSADLGSLQTLILDEADRMLDMGFRDDVM 168
Query: 264 RLINMFRFDEKQLSRMNES-------GVEK-----PLEMDNSSLTQPD--------LQDE 303
+L + F E+Q+ ++ + GV K P ++ S QP L D
Sbjct: 169 KLAS-FCGAERQVIMLSATLKHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADS 227
Query: 304 ENLQDEYIS---DEGNF 317
+ +D+ + D+G F
Sbjct: 228 QEHKDKLLCALMDKGGF 244
>gi|340056449|emb|CCC50781.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 743
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ ++ + V D +++ L + + + +T ++F T A + LK++GI
Sbjct: 517 ITQRLMRVQEDEKMNKLFDLILNQ----KQTDLVLIFVETKRAAEDLHHALKSSGIPSST 572
Query: 454 YHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H D +R + L +F++ + V TD A+RG+DIPNV+HVIQ D D+ HR+G
Sbjct: 573 IHGDRKQMDRERALRDFKDGVTPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIG 632
Query: 513 RTARAGQYGLVTSLYTESNRDLV 535
RT RAG G+ TS YT +NR+L
Sbjct: 633 RTGRAGNKGIATSFYTRNNRNLA 655
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ P+ VQ + L G D++ A+TGSGKT ++LVP++ + G S P
Sbjct: 313 GYKDPTPVQRYGIPVCLEGHDLMACAQTGSGKTAAFLVPVVHYILKH-GVSPAVGRVSHP 371
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTP 221
++++ P L +Q+ L+ + VA GG +P + D++V+ P
Sbjct: 372 I-----AVIMAPTRELAQQIHDEVRKLTFRTD--IFFDVAY-GGIPYPSRFENDILVACP 423
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L + D R + F R VK+++ DEAD +L F+ Q+ L+
Sbjct: 424 GRLKDIFD---RGVLSFSR-VKFLILDEADRMLEMGFEEQIEYLV 464
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 356 VAATL-PINGKKTAGAVL----KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
VAA L P+ K VL +++ PDA + + LH +++ + L
Sbjct: 246 VAAILAPLRSKPDPAHVLLRAIRELVPDAKELKTSTLHRAVSGSSHQFMTLPPGGNKLQL 305
Query: 411 IEAVKERLEFGAETSRT---MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ + GA+ R +VF NTVD+ AV + G+ C CYH ++ EER +++
Sbjct: 306 LAEI-----LGADNRRAQKVLVFCNTVDSCRAVEHFAREEGLPCVCYHGEMPSEERQESM 360
Query: 468 VNFQEKGG-------VFVCTDAAARGIDIPN-VSHVIQADFATSAVDFLHRVGRTARAGQ 519
F + + TD AARG+D P V HV+ DF T++VD+LHR GRTARAG
Sbjct: 361 ATFAAAVAGGGARLPIMIATDLAARGLDFPGTVDHVVNFDFPTTSVDYLHRTGRTARAGN 420
Query: 520 YG 521
G
Sbjct: 421 TG 422
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 29/249 (11%)
Query: 35 SAPS--SFYPLRVRFLRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNV-TWKSLGL 91
SAPS S+ P+ +R + +R A V + +D A +++ LGL
Sbjct: 22 SAPSALSYRPVILRAPVFHNQPSHLYRTLGAPQLTVVNVARHNDWPAASAGPRSFEQLGL 81
Query: 92 SDRLIRALENSGFGRPSIVQAASVGPVLSGK--DVVIAAETGSGKTHSYLVPLIEKLCTA 149
L+ AL G P+ +Q+ S+ P L + + +A+ TGSGKT +YL+PL++ A
Sbjct: 82 QTPLVSALYGMGITEPTDIQSISI-PALMNQPGNYFLASHTGSGKTLAYLLPLVQ----A 136
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
L E S P PR LVL P L +Q+ +A L V+ A C
Sbjct: 137 LKQEEASGFVPRPKRPRV--LVLGPTRELTDQITGVAKKLCHT-----VKFRATCANADT 189
Query: 210 PI--------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
I G DV+V+TP L++I + R ++++V DEAD + + +
Sbjct: 190 SISQQARAMSGPIDVLVATPTRFLHHI----KEGNVAYRDIRWLVVDEADTVFGQGWGEE 245
Query: 262 VIRLINMFR 270
V ++ R
Sbjct: 246 VAAILAPLR 254
>gi|154314076|ref|XP_001556363.1| hypothetical protein BC1G_04981 [Botryotinia fuckeliana B05.10]
Length = 490
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D +W+ L LS + AL GF +P+ +Q+ ++ VL+G DVV A TGSGKT ++ +P
Sbjct: 205 DVSSWEELDLSSNTLSALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIP 264
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++EK A G+ + K PP A L+L P L Q+ AL G P V
Sbjct: 265 IVEKWLEAYGELDEDELKKNTRPPTA--LILSPTRELAHQLTEHITALC--KGMPTSPWV 320
Query: 202 -AVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
AV GG Q + K D+I+ TP L I ++ V+++V DEAD LL
Sbjct: 321 AAVTGGLSVQKQQRQLAKADIIIGTPGRLWEGISSSNELSAS-LKQVRFLVIDEADRLLT 379
Query: 256 GSFQNQVIRLINMF 269
+ ++N
Sbjct: 380 DGHFKEAEEILNAL 393
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R K+ + Q + V AT+ K ++ + F + + LH + +I++
Sbjct: 171 RASKSDDQGFQTVLVTATMT----KAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 226
Query: 402 T-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++
Sbjct: 227 SGSENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPA 283
Query: 461 EERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
E+R + L F+ + G VCTD AARG+D+ +V HVI DF +++D+LHR GRTAR
Sbjct: 284 EQRVENLKKFKTEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 342
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G G VTSL + + L I A +
Sbjct: 343 GAKGKVTSLVAKKDLLLATRIEEAIR 368
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 20/168 (11%)
Query: 98 ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157
A+ +G P+ +Q V VL G+ VV+ + TGSGKT +Y++PL++ L D S
Sbjct: 3 AVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLRR---DEALSG 59
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIG 212
+P PRA +VLCP L EQV R+A ++S R+ V GG Q +
Sbjct: 60 VLMKPRRPRA--VVLCPTRELSEQVFRVAKSISH---HARFRSTMVSGGGRLRPQEDSLN 114
Query: 213 KP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSF 258
P D++V TP +L +I+ V G +KY+V DEAD + F
Sbjct: 115 IPIDMVVGTPGRVLQHIEEG-----NMVYGEIKYLVLDEADTMFDRGF 157
>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
Length = 771
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +ER + L NF+ K V V T A
Sbjct: 549 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 608
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DIPNV HVI D + +++HR+GRT R G GL TS + + N RD+VD +
Sbjct: 609 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNKNIVRDMVDLLI 668
Query: 540 RAAK 543
A +
Sbjct: 669 EAKQ 672
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC----TALGDSENSN 157
S + +P+ VQ ++ + +D++ A+TGSGKT S+LVP++ ++ +N+
Sbjct: 307 SKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNR 366
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-------QGWP 210
++++ P +LVL P L Q+ A + VR V GG + P
Sbjct: 367 NNRKQYP---IALVLAPTRELASQIYEEARKFAY---RSHVRPCVVYGGADIGAQMRDLP 420
Query: 211 IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
++V+TP L++ ++ R + +++VV DEAD +L F+ Q+ R++
Sbjct: 421 ERGCHLLVATPGRLVDMLE----RGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIV 472
>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
Length = 818
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 35/240 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + R + + G+ P+ +Q ++ ++ G+DVV A TGSGKT ++++P++EK
Sbjct: 38 FQSMGLSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPMLEK 97
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K RA LV+ P L EQ + L +R + G
Sbjct: 98 L--------KSHSAK--VGIRA--LVMSPTRELAEQTFKFIKELGRRTD---LRVALILG 142
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G GW PDVIV+TP L+ + ME ++ V+YVVFDEAD L F
Sbjct: 143 GDNMDDQFGWMHANPDVIVATPGRFLHLL-----VEMELSLKAVEYVVFDEADQLFEKGF 197
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQDEYI 311
+ ++ I M +++Q + + +K +E + L QP D + E L+ +Y+
Sbjct: 198 EEH-LKEILMRLPEDRQTLLFSATLPKKLIEFARAGLKQPTLVRLDADTKLSEQLRTQYV 256
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF +T + + +L+ I C + +L R + F+ K + + TD AAR
Sbjct: 281 TVVFVSTKHLIEYLKVLLEALQIPCTYSYGNLDPTARKINIAKFRAGKVKLLLVTDVAAR 340
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
GIDIP + +V+ DF F+HRVGR ARAG+ G SL
Sbjct: 341 GIDIPMLDYVVNYDFPRRPKLFVHRVGRVARAGRSGTAYSL 381
>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
Length = 816
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S T+VF T A+ L G C H D S +ER + L NF+ K V V T A
Sbjct: 594 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 653
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIR 539
ARG+DIPNV HVI D + +++HR+GRT R G GL TS + + N RD+VD +
Sbjct: 654 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNKNIVRDMVDLLI 713
Query: 540 RAAK 543
A +
Sbjct: 714 EAKQ 717
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC----TALGDSENSN 157
S + +P+ VQ ++ + +D++ A+TGSGKT S+LVP++ ++ +N+
Sbjct: 352 SKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNR 411
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-------QGWP 210
++++ P +LVL P L Q+ A + VR V GG + P
Sbjct: 412 NNRKQYP---IALVLAPTRELASQIYEEARKFAY---RSHVRPCVVYGGADIGAQMRDLP 465
Query: 211 IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
++V+TP L++ ++ R + +++VV DEAD +L F+ Q+ R++
Sbjct: 466 ERGCHLLVATPGRLVDMLE----RGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIV 517
>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
Length = 507
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 133/261 (50%), Gaps = 40/261 (15%)
Query: 67 VVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVI 126
+ S++ ++ ++ +TWK LGL++ L +A E + PS +Q ++ L GKDV+
Sbjct: 38 ISSEEGATTAENGSEQKLTWKDLGLNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIG 97
Query: 127 AAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186
AETGSGKT ++ +P+++ L EN P R +LVL P L Q+
Sbjct: 98 LAETGSGKTGAFALPILQALL------EN--------PQRYFALVLTPTRELAFQIGEQF 143
Query: 187 NALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVR 240
AL + G ++ V GG QG + KP +I++TP L+++++ + + +
Sbjct: 144 EALGSGIG---IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---K 197
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEM 290
+KY+V DEAD +L F+ ++ +++ + F F K++ ++ + ++ P+++
Sbjct: 198 AIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKV 257
Query: 291 DNSSLTQPDLQDEENLQDEYI 311
+ S+ Q E LQ Y+
Sbjct: 258 EVSN----KYQTVEQLQQSYL 274
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ K R ++ +AT+ KK A LK P +S Y +L++ ++ +
Sbjct: 221 KILKVLPRERRTFLFSATMTKKVKKLQRASLKD--PVKVEVSNKYQTVE--QLQQSYLFI 276
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
V + L+ + E + M+F +T + +L+ G+ H +S
Sbjct: 277 PVKYKDVYLVHILNE-----LAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQN 331
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 332 KRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 391
Query: 521 GLVTSLYTESNRDLVDTI 538
G ++ ++ + +L I
Sbjct: 392 GRAITMVSQYDIELYQRI 409
>gi|340374499|ref|XP_003385775.1| PREDICTED: ATP-dependent rRNA helicase RRP3-like [Amphimedon
queenslandica]
Length = 443
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 34/221 (15%)
Query: 343 VRKNYQRSK---QYIFVAATLPINGKKTAGAVLKQMFP-DADWISGNYLH--FHNPRLKE 396
+RK SK Q I AATLP K+ G +LK+ P + ++S + H N + K
Sbjct: 194 LRKGGTESKERVQVILTAATLPSKSPKSVGTLLKRWLPRETVYVSTDNTHQVLSNSQFKF 253
Query: 397 KWIEVT--VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC- 453
+++ + DT+ L+ +K ++ + +VF NT+ V + L+ E C
Sbjct: 254 EYLAESEGTDTKFQTLVNELKRD-----KSQKILVFCNTLSNVEELYNKLE----EFTCS 304
Query: 454 ---------------YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQ 497
HK ++ ++R + NF+ V + TD ++RG+DIP++S VI
Sbjct: 305 PSPSSSLWWSNKVGQLHKHITPKKRVSLIENFKSGNIKVLISTDLSSRGLDIPDISSVIM 364
Query: 498 ADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
DF T V FLHR GRTARAG+ G V +L T + DL I
Sbjct: 365 YDFPTGTVGFLHRAGRTARAGKPGKVVALVTSKDEDLATAI 405
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 17/185 (9%)
Query: 86 WKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+K LG+ L L +S P+ +Q+ + P L+G VV AETGSGKT +L+P+++
Sbjct: 17 FKDLGIIPYLCDKLSSSFNIKSPTHIQSKCLVPALNGNHVVANAETGSGKTLCFLLPILQ 76
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L S ++++ + P A LV+ P L Q+ LS D G +VA
Sbjct: 77 RLIHL------STTNEQVSSPIA--LVMVPTADLAHQINHYFQDLSKDYG--FHSSVAYS 126
Query: 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
++V+TP + D K+ +RG++++ +DEAD+L G ++
Sbjct: 127 NRPLLMTNPTHLVVTTPTFIF-QYDIKK-----ILRGLEFICYDEADILFSGGHESASRD 180
Query: 265 LINMF 269
++ F
Sbjct: 181 ILETF 185
>gi|346472553|gb|AEO36121.1| hypothetical protein [Amblyomma maculatum]
Length = 473
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 40/255 (15%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+++NVT+KSLG+ D L A E + P+ +Q ++ L G+DV+ AETGSGKT S+
Sbjct: 28 SEENVTFKSLGVVDVLCEACEQLKWKSPTKIQKEAIPVALQGRDVIGLAETGSGKTASFA 87
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L EN P R +LVL P L Q+ AL A G V+
Sbjct: 88 LPILQALL------EN--------PQRLFALVLTPTRELAFQISEQFEALGASIG---VK 130
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ + GG Q + KP VI++TP L+++++ + + + +KY+V DEAD +
Sbjct: 131 SAVIVGGIDMMTQALLLAKKPHVIIATPGRLVDHLENTKGFSL---KSLKYLVMDEADRI 187
Query: 254 LCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
L F+ +V +++ + + K++ ++ + + P++++ SS Q
Sbjct: 188 LNMDFEEEVDKILRVIPRERRTYLYSATMTKKVQKLQRASLRDPVKVEVSS----KYQTV 243
Query: 304 ENLQDEYISDEGNFE 318
E L Y+ F+
Sbjct: 244 EKLMQYYLFIPAKFK 258
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T +L+ G H + +R +L F+ K + + TD A+RG
Sbjct: 275 MVFCSTCSNTQRTALLLRNLGFTAIPLHGQMGQAKRLGSLTKFKSKNRSILIATDVASRG 334
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 335 LDIPHVDCVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 386
>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|425067413|ref|ZP_18470529.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|404601244|gb|EKB01657.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
Length = 465
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS+ L+RA++ G+ P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++ +P++EK
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L T+ E T R P +L+L P L Q+ A+ + A + +R++ V
Sbjct: 64 LATS----------AEKTKGRKPVKALILTPTRELAAQI---ADNVKAYSRYLPIRSLVV 110
Query: 204 CGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + G DV+++TP LL D + + ++ R V+ +V DEAD +L
Sbjct: 111 FGGVSINPQMMKLRGGVDVLIATPGRLL---DLEHQNAVDLSR-VEVLVLDEADRMLDMG 166
Query: 258 FQNQVIRLINMF 269
F + + R+IN
Sbjct: 167 FIHDIRRVINKL 178
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++F T + + L GI+ H + S R + L +F++ K V TD AA
Sbjct: 248 QVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + +V+ + A D++HR+GRT RA G SL L+ I R K
Sbjct: 308 RGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLK 366
>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
Length = 423
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 10/212 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R + + + +Q +F +AT+P +K AG +L + + +++
Sbjct: 166 RDVRHIIRELPKKRQSMFFSATMPSEIEKLAGTILSNPVKVVVNPVSSTVEV----IQQN 221
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
V + + LI +K + + R++VF+ T + K L AG H +
Sbjct: 222 VYRVAKTDKTNLLIYLLKNK-----QVERSLVFSRTKHGANKIVKKLLQAGFSAEAIHGN 276
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R + L NF+ K V V TD AARGID+P +S VIQ D ++HR+GRT R
Sbjct: 277 KSQNARQQALENFKTMKTSVLVATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGR 336
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AG G S E+ DL+ I + +K PV
Sbjct: 337 AGLSGKAISFCDETESDLLRDIEKLSKRKVPV 368
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 86/177 (48%), Gaps = 27/177 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L+ L+ AL+ +G+ + + +Q ++ +++ KD++ A+TG+GKT ++ +P++
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPIL-- 60
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+N +K +L+L P E +++ ++ + + G
Sbjct: 61 --------QNIMEEKTIGKGAIKALILAPT---RELAIQIGDSFQTYAKYLPLNIQVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVR--GVKYVVFDEADMLL 254
G Q + + D++V+TP LL+ I R FV+ V + V DEADM+L
Sbjct: 110 GVSQNPQTATLKRGTDILVATPGRLLDLI------RQGFVKLNQVDFFVLDEADMML 160
>gi|219120540|ref|XP_002181006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407722|gb|EEC47658.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 462
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 190/461 (41%), Gaps = 85/461 (18%)
Query: 91 LSDRLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
L L+ A+E F PS +Q ++ L +D++ AETGSGKT ++ VPL L
Sbjct: 45 LHTALLEAIEQVLRFKEPSPIQRQAIPIGLQRRDLIGIAETGSGKTVAFGVPLCHYLLNL 104
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
S +D P +LV+ P L Q+ L + + L+R V + GGQ
Sbjct: 105 PSRVLESVADAGPL-----ALVMAPTRELALQIDGEFQKLLSR--QRLIRTVGIVGGQQI 157
Query: 210 PIGKPD------VIVSTPAALLNNIDPKRRRRMEF--VRGVKYVVFDEADMLLCGSFQNQ 261
+ ++V TP + ID M + + Y+V DEAD ++ F Q
Sbjct: 158 QQQAQELRRGVHIVVGTPGRINECID------MAYMVLNQCCYIVLDEADRMIDMGFAPQ 211
Query: 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDS 321
+ E I D S
Sbjct: 212 I----------------------------------------------ETILDACGGSLKS 225
Query: 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ--MFPDA 379
+ E T + + ++K D R R +AT+P ++ A L+ +
Sbjct: 226 ENEAETYQQEKEDLQKADVARHRLTA-------MFSATMPPEVERIAKRYLRHPAIVSVG 278
Query: 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439
D SG N R++++ + + +Q + ++ + F E + +VF N
Sbjct: 279 DKDSGK-----NARIEQRIMFLASVSQKEKVLREQLQDRRFLRE--KIIVFVNEKKHAEG 331
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQAD 499
V ++++ +G C H + E+R + L F+ V V TD A RG+DIP+V+HVI D
Sbjct: 332 VGRMVERSGRACVVLHGGKTQEQREENLETFRRGNVVLVATDVAGRGLDIPDVAHVINYD 391
Query: 500 FATSAVD-FLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
T +++ + HR+GRT RAG+ G+ TS T+ + ++ ++
Sbjct: 392 LPTRSIENYTHRIGRTGRAGKEGVATSFITDEDEGIMAPLK 432
>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
Length = 465
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS+ L+RA++ G+ P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++ +P++EK
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L T+ E T R P +L+L P L Q+ A+ + A + +R++ V
Sbjct: 64 LATS----------AEKTKGRKPVKALILTPTRELAAQI---ADNVKAYSRYLPIRSLVV 110
Query: 204 CGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + G DV+++TP LL D + + ++ R V+ +V DEAD +L
Sbjct: 111 FGGVSINPQMMKLRGGVDVLIATPGRLL---DLEHQNAVDLSR-VEVLVLDEADRMLDMG 166
Query: 258 FQNQVIRLINMF 269
F + + R+IN
Sbjct: 167 FIHDIRRVINKL 178
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++F T + + L GI+ H + S R + L +F++ K V TD AA
Sbjct: 248 QVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + +V+ + A D++HR+GRT RA G SL L+ I R K
Sbjct: 308 RGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLK 366
>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
Length = 518
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +TWK LGL+D L +A + + PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 66 DQKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFAL 125
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L +P R +LVL P L Q+ AL + G ++
Sbjct: 126 PILHALLE--------------SPQRYFALVLTPTRELAFQIGEQFEALGSGIG---IKC 168
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 169 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIKYLVMDEADRIL 225
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q E
Sbjct: 226 NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVE 281
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 282 QLQQSYL 288
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 312 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 371
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G ++ ++ + +L I
Sbjct: 372 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
Length = 518
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 124/247 (50%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +TWK LGL+D L +A + + PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 66 DQKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFAL 125
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L +P R +LVL P L Q+ AL + G ++
Sbjct: 126 PILHALLE--------------SPQRYFALVLTPTRELAFQIGEQFEALGSGIG---IKC 168
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 169 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIKYLVMDEADRIL 225
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q E
Sbjct: 226 NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVE 281
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 282 QLQQSYL 288
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 312 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 371
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G ++ ++ + +L I
Sbjct: 372 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRI 423
>gi|425073153|ref|ZP_18476259.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
gi|404595790|gb|EKA96324.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
Length = 465
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS+ L+RA++ G+ P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++ +P++EK
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L T+ E T R P +L+L P L Q+ A+ + A + +R++ V
Sbjct: 64 LATS----------AEKTKGRKPVKALILTPTRELAAQI---ADNVKAYSRYLPIRSLVV 110
Query: 204 CGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + G DV+++TP LL D + + ++ R V+ +V DEAD +L
Sbjct: 111 FGGVSINPQMMKLRGGVDVLIATPGRLL---DLEHQNAVDLSR-VEVLVLDEADRMLDMG 166
Query: 258 FQNQVIRLINMF 269
F + + R+IN
Sbjct: 167 FIHDIRRVINKL 178
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++F T + + L GI+ H + S R + L +F++ K V TD AA
Sbjct: 248 QVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + +V+ + A D++HR+GRT RA G SL L+ I R K
Sbjct: 308 RGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLK 366
>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 7/205 (3%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP---DADWISGNYLHFHNPRLKEK 397
R V N + Q + +AT+P+ + A L + A + + + H +L +
Sbjct: 218 REVMMNLPKPHQTLLFSATMPVEVEALAADYLNKPVKVKVGAVSVPTSNVAQHLEKLVDS 277
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VD + L+E E +FG + T+VF + +L G+ +H
Sbjct: 278 Q---KVDRLCELLLEEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGG 334
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S +ER L +F + V V TD AARG+D+ V HV+ D D++HRVGRT R
Sbjct: 335 RSQQEREAALADFTTGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRVGRTGR 394
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRA 541
AG G TS YT+ + LV I+RA
Sbjct: 395 AGMTGRATSFYTDRDSFLVAQIKRA 419
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ + L +++ ++ F +P+ +QA ++ + SG+DV+ AETGSGKT ++ +P+I+
Sbjct: 49 SFEDMNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDVLGCAETGSGKTAAFSIPMIQ 108
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L E D P ++V+ P L +Q+ + A S + + V
Sbjct: 109 H---CLQQPEIKRGD-------GPFAIVMAPTRELAQQIEKEAKIFSRSSKG--FKTTIV 156
Query: 204 CGGQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + D V V+TP L++++ + R V V+ DEAD +L
Sbjct: 157 VGGTNMSEQRMDLKNGVEVCVATPGRLIDHL---HQGNTNLAR-VSLVILDEADRMLDMG 212
Query: 258 FQNQV 262
F+ Q+
Sbjct: 213 FEPQI 217
>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
Length = 423
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R + + + +Q +F +AT+P +K AG +L + + + +
Sbjct: 166 RDVRHIIRELPKKRQSMFFSATMPTEIEKLAGTILSNPVKVVVNPVSSTVEV----ILQS 221
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
V + + LI +K + + R++VF+ T + K L AG H +
Sbjct: 222 VYRVAKTDKTNLLIHLLKNK-----QVERSLVFSRTKHGANKIVKKLLQAGFTAEAIHGN 276
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R + L NF+ K V V TD AARGID+P +S VIQ D ++HR+GRT R
Sbjct: 277 KSQNARQQALENFKTMKTSVLVATDIAARGIDVPELSQVIQFDLPEVPETYVHRIGRTGR 336
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AG G S E+ DL+ I + +K PV
Sbjct: 337 AGLSGKAISFCDETESDLLRDIEKLSKRKVPV 368
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L+ L+ AL+ +G+ + + +Q ++ +L+ KD++ A+TG+GKT ++ +P++
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPIL-- 60
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+N +K +L+L P L Q+ + PL V G
Sbjct: 61 --------QNIMEEKTVGKGAIKALILAPTRELAIQIGESFQTYA--KYLPLNIQVIFGG 110
Query: 206 GQGWPIGK-----PDVIVSTPAALLNNIDPKRRRRMEFVR--GVKYVVFDEADMLL 254
P D++++TP LL+ I R FV+ V++ V DEADM+L
Sbjct: 111 VSQNPQTATLKRGTDILIATPGRLLDLI------RQGFVKLNQVEFFVLDEADMML 160
>gi|298710365|emb|CBJ31982.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 613
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI------------ 399
Q+IFV ATLP ++ +LK+ FP ++ G LH P ++E I
Sbjct: 399 QFIFVTATLP----QSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPGEPRNE 454
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG----IECYCYH 455
E + + DAL+ ++ R+ RT+VF NT+ V +L A E YH
Sbjct: 455 ETGLARKRDALLSQLERRMAL-----RTLVFCNTIQGCRQVENMLSRASRGGQFETLVYH 509
Query: 456 KDLSLEERAKTLVNFQEKGG----VFVCTDAAARGIDI--PNVSHVIQADFATSAVDFLH 509
+ ++ A + F V VCTD ++RG+D V HV+ DF ++++
Sbjct: 510 SAIDPKQAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMR 569
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
RVGRTARAG+ G+VT L LV I K G+
Sbjct: 570 RVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGK 606
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
+G SD + AL++ G RPS +QA S +L+G V+A +TGSGKT +YL PL+++L
Sbjct: 218 IGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYLAPLVQRL-- 275
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
L + + P PR L+L P L +QV +A LS G R+ GG G
Sbjct: 276 RLEELAEVHGRARPGRPRV--LILAPTAELAQQVYGVAQRLS---GSVPFRSCCFTGGPG 330
Query: 209 WPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
DV+V+TP + ++ + + + V+ DE D+L
Sbjct: 331 RTFKTQAKLLEEGVDVLVATPGRVATLLEAG----VLNLEDCRAVILDEVDVLF 380
>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 484
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 28/213 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D R+ K ++Q +F +AT+P P+ ++ +LH NP R++
Sbjct: 166 DIERICKLVPFTRQTLFFSATMP---------------PEITRLTETFLH--NPVRIEVA 208
Query: 398 WIEVTVDTQVDALI---------EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
T T L+ E +++ + ++F N V + K L+ G
Sbjct: 209 RASSTATTITQGLVASAHGPAKRETLRQLIRGAENLKNAIIFCNRKRDVAVLHKSLQKHG 268
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D+ R +L F+ + VC+D AARG+DIP+VSHV D T A D+
Sbjct: 269 FSAGALHGDMDQRARMTSLDAFKSGDVNLLVCSDVAARGLDIPDVSHVFNFDVPTHAEDY 328
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+HR+GRT RAG+ G+ S+ T ++R VD I +
Sbjct: 329 VHRIGRTGRAGRSGVALSIVTSADRKYVDEIEK 361
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 110/221 (49%), Gaps = 28/221 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGLS+++++A+ +G+ P+ +QA ++ L+G+D++ A+TG+GKT ++ +P++
Sbjct: 1 MTFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVRA 200
+L + PR +L+L P L QV + N L+
Sbjct: 61 SRLEQGRARARM---------PR--TLILEPTRELAAQVEESFARYGINHKLNVALLIGG 109
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
V+ + + DV+++TP LL D R ++ + G++ +V DEAD +L F
Sbjct: 110 VSFAEQENKIMRGADVLIATPGRLL---DFSERGKL-LLTGIEILVIDEADRMLDMGFIP 165
Query: 261 QVIRLINMFRFDEK----------QLSRMNESGVEKPLEMD 291
+ R+ + F + +++R+ E+ + P+ ++
Sbjct: 166 DIERICKLVPFTRQTLFFSATMPPEITRLTETFLHNPVRIE 206
>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
Length = 478
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 15/187 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L LS++ ++ALE +GF P+ +QA ++ P L G+DV+ AA TG+GKT ++L+P+IE
Sbjct: 8 TFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 67
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L + + +P P +LVL P L V++A L VR V
Sbjct: 68 RLAGGAPKDRPAAAHGKPGP---RALVLAPTRELA---VQIAGELERFGRGRHVRGALVI 121
Query: 205 GG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GG Q + +VIV+TP L++++ R + G++ +V DEAD +L F
Sbjct: 122 GGVGMGAQSAALRDHEVIVATPGRLVDHLQQGTAR----LDGLEVLVLDEADRMLDMGFA 177
Query: 260 NQVIRLI 266
Q+ R++
Sbjct: 178 PQLKRIL 184
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T V K L+ AG + H D S +R L F++ + V V TD AAR
Sbjct: 257 TLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAAR 316
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GID+ + HV+ D D++HRVGRTAR G ++ + DL+ I R
Sbjct: 317 GIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRDIER 371
>gi|339061979|ref|ZP_08649136.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
Length = 448
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 30/231 (12%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L++RLI+ALE GF +P+ VQ S+ L+GKD++++AETGSGKT ++L+P++ KL
Sbjct: 11 LNERLIKALEKQGFEQPTPVQEQSIPAALAGKDLLVSAETGSGKTAAFLLPILNKLLA-- 68
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
D+ N+ + +LVL P L QV++ AL++ + ++A + G + +
Sbjct: 69 NDAPNTGTR---------ALVLVPTRELARQVLKNCEALASFSH---LKAGLIIGRENFQ 116
Query: 211 IGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
I K P+++++TP L+ ++D + + ++ +V DEAD +L F V++
Sbjct: 117 IQKALFRKNPEILIATPGRLVEHLD----QNTPDFKDLEVLVLDEADRMLDMGFGEDVLK 172
Query: 265 LINMFRFDEKQL---SRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312
+ + + + L + +N+ G+ KP M LT P +++D++ S
Sbjct: 173 ITHACNKERQTLLYSATLNQKGL-KP--MIEKVLTDPQKLLLNSVRDQHQS 220
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 10/210 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D ++ + +Q + +ATL G K +++++ D + N + + ++++
Sbjct: 168 EDVLKITHACNKERQTLLYSATLNQKGLK---PMIEKVLTDPQKLLLNSVRDQHQSIRQQ 224
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
I + L+ A+ R ++ + ++F NT + ++L + + H +
Sbjct: 225 IILADDTGHKERLLLALLTREKY----EKALIFTNTRAKADVLGEMLFKSEVRSGVLHGE 280
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ E R + + + V +D AARG+DI + VI D A S D+LHR+GRT R
Sbjct: 281 MEQEHRNRVVERLRTGHISALVASDVAARGLDIKGIDLVINFDMARSGDDYLHRIGRTGR 340
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
AG+ GL SL + +L+ I R LGQ
Sbjct: 341 AGETGLAVSLIIDPEWNLMAGIERY--LGQ 368
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K KQ +F +AT+P + + KQ D I + N + +
Sbjct: 167 DIERIFKMTPPKKQTLFFSATMPPEITR----LTKQFLRDPVRIEASRPATTNENITQLM 222
Query: 399 IEV-TVDTQVD-----ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
++V + D + ALIE K ++E G +VF N V V K LK+ G +
Sbjct: 223 VKVPSSDPKAKRLALRALIE--KAQIETG------IVFCNRKTEVDVVAKSLKSHGFDAA 274
Query: 453 CYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H DL +R KTL F++ + V +D AARG+DIP VSHV D A D++HR+
Sbjct: 275 AIHGDLDQSQRMKTLAAFRDGSLKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRI 334
Query: 512 GRTARAGQYGLVTSLYTESN 531
GRT RAG+ G+ L T ++
Sbjct: 335 GRTGRAGRSGIAYMLVTPAD 354
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS ++A+ ++G+ + +QAA++ L+G+DV+ A+TG+GKT ++ +P+I+K
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPMIDK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + PRA LV+ P L +QV + G L A+ + G
Sbjct: 64 LASGRAKARM---------PRA--LVIAPTRELADQVASSFEKYA--KGTKLSWALLIGG 110
Query: 206 GQ-GWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G + K DV+++TP LL++ + R + GV+ +V DEAD +L F
Sbjct: 111 VSFGDQVKKLDRGVDVLIATPGRLLDHFE----RGGLLMTGVQIMVVDEADRMLDMGFIP 166
Query: 261 QVIRLINM 268
+ R+ M
Sbjct: 167 DIERIFKM 174
>gi|330798542|ref|XP_003287311.1| hypothetical protein DICPUDRAFT_151404 [Dictyostelium purpureum]
gi|325082704|gb|EGC36178.1| hypothetical protein DICPUDRAFT_151404 [Dictyostelium purpureum]
Length = 1008
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 358 ATLPINGKKTAGAVLKQM-------FPDADWISGNYLHFHNPRLKEKWIEVTVD--TQVD 408
LP+N + + Q+ FP + I+ +H L +K+I+V + +
Sbjct: 790 GVLPVNAVICSATLTDQLMSTIDSIFPSIEKIATPTIHRSLNTLSQKFIDVKEKGGDKHN 849
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
AL++A+ E + +T++F NT ++V + L + H ++ R+
Sbjct: 850 ALLKAINEA-KTPTPPRKTLIFCNTPNSVRSTEYFLTENKFKATSLHGEMPPHRRSNNWR 908
Query: 469 NF--QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F Q V TD A+RGIDI V HVI DF ++ +D+LHR+GRTARAG GLVTSL
Sbjct: 909 TFTNQADCQFLVSTDIASRGIDIDCVDHVILFDFPSNPIDYLHRIGRTARAGNAGLVTSL 968
Query: 527 YTESNRDLVDTIRRAAKLG 545
T+ + L ++I+ + + G
Sbjct: 969 ITKRDSILANSIKESIRKG 987
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 79 FADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTH 136
F V + LG+ L+ L+NS PS++Q ++ +L KDV+ ++TG+GKT
Sbjct: 522 FKGRGVAFSRLGIYGYLVETLKNSFDITIPSLIQQLAIPEILKKNKDVLYVSQTGTGKTL 581
Query: 137 SYLVPLIEKL 146
+YL+P+I+++
Sbjct: 582 TYLLPIIQEI 591
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 40/266 (15%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
S K S+D ++++V++KSLG+ D L A E + PS +Q ++ L G D++ A
Sbjct: 7 SSKLSSNDLEDSEESVSFKSLGVVDVLCEACERLKWKSPSKIQREAIPVALQGSDIIGLA 66
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT ++ +P+++KL +P R +L+L P L Q+ A
Sbjct: 67 ETGSGKTGAFAIPILQKLL--------------DSPQRLYALILTPTRELAFQISEQFEA 112
Query: 189 LSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L + G V+ V GG Q + KP +I++TP L+++++ + + R +
Sbjct: 113 LGSAIG---VKCAVVVGGIDMMSQSLMLAKKPHIIIATPGRLIDHLENTKGFNL---RAL 166
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDN 292
K++V DEAD +L F+ +V +++ + + K+++++ + ++ P++++
Sbjct: 167 KFLVMDEADRILNMDFEQEVDKILKVIPRERSTYLYSATMTKKVAKLQRASLQNPVKVEV 226
Query: 293 SSLTQPDLQDEENLQDEYISDEGNFE 318
SS Q + LQ Y+ F+
Sbjct: 227 SS----KYQTVDKLQQYYLFVPAKFK 248
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T +L+ G+ H +S +R +L F+ K + + TD A+RG
Sbjct: 265 MVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRLGSLNKFKSKSRSILIATDVASRG 324
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + ++ + +L I
Sbjct: 325 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELYQRI 376
>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
Length = 523
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +TWK LGL+D L +A E + PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 61 DQPLTWKDLGLNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFAL 120
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L EN P R +LVL P L Q+ AL + G ++
Sbjct: 121 PILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEALGSGIG---IKC 163
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 164 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNL---KAIKYLVMDEADRIL 220
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q +
Sbjct: 221 NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVD 276
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 277 QLQQYYI 283
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ K R ++ +AT+ KK A LK P +S Y +L++ +I +
Sbjct: 230 KILKVLPRERRTFLFSATMTKKVKKLQRASLKD--PVKVEVSNKYQTVD--QLQQYYIFI 285
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
V + L+ + E + M+F +T + +L+ G+ H +S
Sbjct: 286 PVKYKDVYLVHILNE-----LAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQN 340
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 341 KRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 400
Query: 521 GLVTSLYTESNRDLVDTIRR 540
G ++ T+ + +L I +
Sbjct: 401 GQAITMVTQYDIELYQRIEQ 420
>gi|407408155|gb|EKF31699.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 787
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ +K + V ++D L E + ++ +T ++F T A + LK+ GI
Sbjct: 553 ITQKIVRVQESEKMDKLFEVIYQQ----KQTDLVLIFVETKRAAEELHYALKSEGIPSAT 608
Query: 454 YHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H D +R + L +F++ + V TD A+RG+D+PNV+HVIQ D D+ HR+G
Sbjct: 609 IHGDRRQFDRERALRDFKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIG 668
Query: 513 RTARAGQYGLVTSLYTESNRDLV 535
RT RAG G TS Y ++NR+L
Sbjct: 669 RTGRAGNKGTATSFYNKNNRNLT 691
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ +P+ VQ + L+G D++ A+TGSGKT ++LVP++ + G S P
Sbjct: 349 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKH-GVSPARERVSYP 407
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTP 221
++++ P L Q+ L+ + V GG +P + D++V+ P
Sbjct: 408 I-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVYGGTPYPTRFENDILVACP 459
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L + D R + VK++V DEAD +L F+ Q+ L+
Sbjct: 460 GRLKDIFD----RGIVSFSQVKFLVLDEADRMLEMGFEEQIEYLV 500
>gi|426371743|ref|XP_004052801.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Gorilla gorilla gorilla]
Length = 406
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q +V L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 798
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P A L+Q + ++ + + +K + V ++D L
Sbjct: 528 RQTLMFSATFPQRILNLAKRYLRQHYY---LLTVGRVGSTTKNITQKIVRVQESEKMDKL 584
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
E + ++ +T ++F T A + LK+ GI H D +R + L +F
Sbjct: 585 FEVIYQQ----KQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDF 640
Query: 471 QEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ + V TD A+RG+D+PNV+HVIQ D D+ HR+GRT RAG G TS Y +
Sbjct: 641 KDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNK 700
Query: 530 SNRDLV 535
+NR+L
Sbjct: 701 NNRNLT 706
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ +P+ VQ + L+G D++ A+TGSGKT ++LVP++ + G S P
Sbjct: 364 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKH-GVSPARERVSYP 422
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTP 221
++++ P L Q+ L+ + V GG +P + D++V+ P
Sbjct: 423 I-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVYGGTPYPTRFENDILVACP 474
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L + D R + F R VK++V DEAD +L F+ Q+ L+
Sbjct: 475 GRLKDIFD---RGIVSFSR-VKFLVLDEADRMLEMGFEEQIEYLV 515
>gi|443726900|gb|ELU13896.1| hypothetical protein CAPTEDRAFT_175937 [Capitella teleta]
Length = 453
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 124/254 (48%), Gaps = 40/254 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ VT+KSLG++D L A E G+ PS +Q S+ L G DV+ AETGSGKT S+ +
Sbjct: 24 EETVTFKSLGVTDVLCEACEILGWKAPSKIQKESIPVALQGSDVIGLAETGSGKTGSFAL 83
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L P R LVL P L Q+ AL A G V+
Sbjct: 84 PVLQTLLD--------------NPQRMYCLVLTPTRELAFQISEQFEALGASIG---VKC 126
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 127 AVIVGGMDMMTQSMVLAKKPHIIIATPGRLVDHLENTKGFNL---RALKYLVMDEADRIL 183
Query: 255 CGSFQNQVIRLINMFRFDEK----------QLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + + K +++++ + ++ P++++ S+ Q +
Sbjct: 184 NMDFEQEVNKILKVIPKERKTYLYSATMTSKVAKLQRACLKNPVKVEVST----KYQTVD 239
Query: 305 NLQDEYISDEGNFE 318
LQ Y F+
Sbjct: 240 KLQQSYCFIPAKFK 253
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF +T V +L+ G+ H ++ +R L F+ K + + TD A+RG
Sbjct: 270 IVFCSTCANTQRVALMLRNLGMTAIPLHGQMNQTKRLGALNKFKSKSRSILIATDVASRG 329
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V+ V+ D T + D++HRVGRTARAG+ G +L T+ + +L I +
Sbjct: 330 LDIPHVNVVVNFDIPTHSKDYIHRVGRTARAGKSGKAITLVTQYDVELYQRIEQ 383
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 18/216 (8%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ + ++Q+I V AT P +K + ++ P A I+ + LH L++++
Sbjct: 269 DIRQIMGKARNTQQFIAVGATHPTAAQK----LYREFCPGAKPITVD-LHQTPSNLRQRF 323
Query: 399 IEVT-VDTQVDALIEAVKE------RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
I V+ + + D ++ +KE RL G R MVF NTVD+ + L+ G
Sbjct: 324 IRVSGANGKTDEILALLKEETHKKTRLLSGG---RVMVFCNTVDSCRFLDYFLQEHGFTT 380
Query: 452 YCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPN-VSHVIQADFATSAVDFLH 509
YH D+ + R + F + + + VCTD AARG+D + + VI DF +A+D+LH
Sbjct: 381 ANYHGDIPKDRREEEFQAFVRGERQILVCTDIAARGLDYDHKIDQVILFDFPRTAIDYLH 440
Query: 510 RVGRTARA-GQYGLVTSLYTESNRDLVDTIRRAAKL 544
R GRTAR G VTSL T+ + L I A ++
Sbjct: 441 RAGRTARGPSGTGTVTSLVTKKDLPLASFIEDATRI 476
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 54/282 (19%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ SLG+ L+ AL+ G P+ +Q +V +L G V+I + TGSGKT +YL+P+++
Sbjct: 81 SFASLGVFPELVTALDAVGIQTPTAIQTRAVPAILGGASVIIGSATGSGKTLAYLLPIVQ 140
Query: 145 KL-------CTALGDSENS-------NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190
+L + + E + + + P PRA LV+ P L EQV+ + LS
Sbjct: 141 RLKSEEQQVVSEMQTEEAAEMMRRGRHPLRRPGAPRA--LVITPTRELAEQVLGVCKHLS 198
Query: 191 ------ADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
A +G VR + + P+ D++++T LL +D + R +R V+
Sbjct: 199 HYIKIRAASGLG-VRRIVRAQLEEQPV---DILITTSGRLLQLLDEQLIR----LRSVQT 250
Query: 245 VVFDEADMLLC--GSFQNQVIRLINMFRFDE-------------KQLSRMNESGVEKPLE 289
VV DE D LL G F + + +++ R + ++L R G KP+
Sbjct: 251 VVLDEVDTLLLDEGGFHDDIRQIMGKARNTQQFIAVGATHPTAAQKLYREFCPGA-KPIT 309
Query: 290 MDNSSLTQPDLQDEENLQDEYISDEG-NFEGDSDVEGLTEET 330
+D Q NL+ +I G N + D + L EET
Sbjct: 310 VDLH-------QTPSNLRQRFIRVSGANGKTDEILALLKEET 344
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 487
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 15/187 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L LS++ + ALE +GF P+ +Q ++ P L+G+DV+ AA TG+GKT ++L+P+IE
Sbjct: 16 TFADLNLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIE 75
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L A + + P P +LVL P E V++A L VR V
Sbjct: 76 RLSGAATKDRPAAAHARPGP---RALVLAPT---RELAVQIAGELDRFGRGRHVRGALVI 129
Query: 205 GGQGW-----PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GG G + +VIV+TP L++++ R + G++ +V DEAD +L F
Sbjct: 130 GGVGMGAQSAALRDHEVIVATPGRLVDHLQQGTAR----LDGLEVLVLDEADRMLDMGFA 185
Query: 260 NQVIRLI 266
Q+ R++
Sbjct: 186 PQLKRIL 192
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T V K L+ AG + H D S +R L F++ + V V TD AAR
Sbjct: 265 TLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAAR 324
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GID+ + HV+ D D++HRVGRTAR G ++ + DL+ I R
Sbjct: 325 GIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEELDLLRDIER 379
>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 792
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P A L+Q + ++ + + +K + V ++D L
Sbjct: 521 RQTLMFSATFPQRILNLAKRYLRQHYY---LLTVGRVGSTTKNITQKIVRVQESEKMDKL 577
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
E + ++ +T ++F T A + LK+ GI H D +R + L +F
Sbjct: 578 FEVIYQQ----KQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDF 633
Query: 471 QEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ + V TD A+RG+D+PNV+HVIQ D D+ HR+GRT RAG G TS Y +
Sbjct: 634 KDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNK 693
Query: 530 SNRDLV 535
+NR+L
Sbjct: 694 NNRNLT 699
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ +P+ VQ + L+G D++ A+TGSGKT ++LVP++ + G S P
Sbjct: 357 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKH-GVSPARERVSYP 415
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTP 221
++++ P L Q+ L+ + V GG +P + D++V+ P
Sbjct: 416 I-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVYGGTPYPTRFENDILVACP 467
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L + D R + F R VK++V DEAD +L F+ Q+ L+
Sbjct: 468 GRLKDIFD---RGIVSFSR-VKFLVLDEADRMLEMGFEEQIEYLV 508
>gi|407847412|gb|EKG03129.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 794
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P A L+Q + ++ + + +K + V ++D L
Sbjct: 522 RQTLMFSATFPQRILNLAKRYLRQHYY---LLTVGRVGSTTKNITQKIVRVQESEKMDKL 578
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
E + ++ +T ++F T A + LK+ GI H D +R + L +F
Sbjct: 579 FEVIYQQ----KQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDF 634
Query: 471 QEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ + V TD A+RG+D+PNV+HVIQ D D+ HR+GRT RAG G TS Y +
Sbjct: 635 KDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNK 694
Query: 530 SNRDLV 535
+NR+L
Sbjct: 695 NNRNLT 700
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
G+ +P+ VQ + L+G D++ A+TGSGKT ++LVP++ + G S P
Sbjct: 358 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKH-GVSPARERVSYP 416
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTP 221
++++ P L Q+ L+ + V GG +P + D++V+ P
Sbjct: 417 I-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVYGGTPYPTRFENDILVACP 468
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
L + D R + F R VK++V DEAD +L F+ Q+ L+
Sbjct: 469 GRLKDIFD---RGIVSFSR-VKFLVLDEADRMLEMGFEEQIEYLV 509
>gi|375111191|ref|ZP_09757402.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
gi|374568733|gb|EHR39905.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
Length = 449
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 106/187 (56%), Gaps = 23/187 (12%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D + ++ +GL RL+R++++ GF RP+ +Q ++ V+ G+D++++++TGSGKT +YL+P
Sbjct: 4 DILQFQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLP 63
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++++L + S+ A +L+L P L +QV A+ V AV
Sbjct: 64 MMQRLLKSRALSKQD----------ARALILTPTRELAKQVYAQLRLFVANTP---VTAV 110
Query: 202 AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG+ + +PD+IV+TP +++++ K F++G++ ++ DEAD +L
Sbjct: 111 LLVGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKS----VFLQGLEMLILDEADRMLD 166
Query: 256 GSFQNQV 262
F Q+
Sbjct: 167 LGFLPQL 173
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ +L + ++F T D + + + AG+ L+ +R K + +F
Sbjct: 239 EALLAKLLQQESLKQLIIFTATRDDAGRLAEFCQQAGLPAIGLSARLNQAQRNKVMQDFA 298
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
K V V TD A+RG+D+ VSHVI D +++HR+GRT RAG G SL
Sbjct: 299 SGKYQVLVTTDLASRGLDLLQVSHVINFDLPKHPEEYVHRIGRTGRAGAKGTAISL 354
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 43/256 (16%)
Query: 55 GRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAAS 114
G PFR + A + + D A N T+ LG+S L RA + GF +PS +QA +
Sbjct: 16 GSPFRSPSPAPS-------NPDAPEASHNKTFADLGISPELCRACASMGFKKPSDIQAEA 68
Query: 115 VGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP 174
+ L GKD++ A+TGSGKT ++ +P+++ L EN P P A LVL P
Sbjct: 69 IPHALEGKDIIGLAQTGSGKTAAFSLPILQTLW------EN------PQPFFA--LVLAP 114
Query: 175 NVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGK-PDVIVSTPAALLNNI 228
L Q+ + +L + G VR + GG Q + K P VIV+TP L++++
Sbjct: 115 TRELAYQISQQVTSLGSGIG---VRTAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHL 171
Query: 229 DPKRRRRMEFVRGVKYVVFDEADMLL---CGSFQNQVIRLI----NMFRFD---EKQLSR 278
+ + + + +KY+V DEAD LL G ++V+++I N + F ++++
Sbjct: 172 ENTKGFSL---KSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYLFSATMTTKVAK 228
Query: 279 MNESGVEKPLEMDNSS 294
+ + + KP+ ++ SS
Sbjct: 229 LQRASLNKPVRVEVSS 244
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDA 482
+S ++F TV ++ IL+ G H ++ R +L F+ G + V TD
Sbjct: 277 SSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
A+RG+DIP V VI D T++ D++HRVGRTARAG+ G +L T+ + +++ I
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 486
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK------QMFPDADWISGNYLHFHNP 392
D R+V + +Q +F +AT+P K A +L+ ++ P + I
Sbjct: 168 DIRKVVAMLPQDRQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIE--------- 218
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
R++++ +D + + +KE L E + +VF T + ++L+ AGI+C
Sbjct: 219 RIRQELYR--IDKRRKGAL--LKELLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCA 274
Query: 453 CYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H + S R + L NF+ E+ V V TD AARGID+ +VSHV D F+HR+
Sbjct: 275 AIHGNKSQNRRQEALGNFKCEQIRVLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRI 334
Query: 512 GRTARAGQYGLVTSL 526
GRTARAG+ G+ S
Sbjct: 335 GRTARAGKEGVAISF 349
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 42/209 (20%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ L L++ L RA+ G+ P+ +Q S+ +L GKD++ A+TG+GKT ++ +P++
Sbjct: 1 MKFEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV------------VRMANALSA 191
++L +S K +P +L+L P L QV + A
Sbjct: 61 QRLL---------DSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTAISTACIFGG 111
Query: 192 DNGEP----LVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
N P L+R V DV+V+TP LL+ I K ++ +++ V
Sbjct: 112 VNDNPQKQKLIRGV-------------DVLVATPGRLLDLIGQK----AISLKKLEFFVL 154
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + + +++ M D + L
Sbjct: 155 DEADRMLDMGFIHDIRKVVAMLPQDRQNL 183
>gi|405968650|gb|EKC33699.1| ATP-dependent RNA helicase DDX54 [Crassostrea gigas]
Length = 472
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 28/222 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q +V ++ GKDVV A TGSGKT ++L+P+ EK
Sbjct: 48 FQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGKTAAFLIPMFEK 107
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T S A L+L P L Q ++ L G +RA V G
Sbjct: 108 LKTHTAKSG------------ARGLILSPTRELALQTLKFTKELGKYTG---LRAAVVLG 152
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + PD+I++TP L++ + ++ ++ V+YVVFDEAD L FQ
Sbjct: 153 GDKMDDQFAALHENPDIIIATPGRLMHVLVEMEKK----LKSVEYVVFDEADRLFEMGFQ 208
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
Q+ +I+ R E + + + + + K L E + L P L
Sbjct: 209 EQLHEIIH--RLPESRQTVLFSATLPKLLVEFAKAGLHDPTL 248
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAAR 485
T+VFA T V + IL AGI+ + L R + FQ K V + TD AAR
Sbjct: 291 TVVFAATKHHVEYLHMILTYAGIDSTYIYSSLDPSARKINVAKFQHKKVKVLIVTDLAAR 350
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
GIDIP + +VI +F + F+HRVGR ARAG+ G SL +
Sbjct: 351 GIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGYAYSLVAQ 394
>gi|347831310|emb|CCD47007.1| hypothetical protein [Botryotinia fuckeliana]
Length = 774
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D +W+ L LS + AL GF +P+ +Q+ ++ VL+G DVV A TGSGKT ++ +P
Sbjct: 205 DVSSWEELDLSSNTLSALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIP 264
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++EK A G+ + K PP A L+L P L Q+ AL G P V
Sbjct: 265 IVEKWLEAYGELDEDELKKNTRPPTA--LILSPTRELAHQLTEHITALC--KGMPTSPWV 320
Query: 202 -AVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
AV GG Q + K D+I+ TP L I + V+++V DEAD LL
Sbjct: 321 AAVTGGLSVQKQQRQLAKADIIIGTPGRLWEVISSSNELSASL-KQVRFLVIDEADRLLT 379
Query: 256 GSFQNQVIRLINMF 269
+ ++N
Sbjct: 380 DGHFKEAEEILNAL 393
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF---QEKGGVFVCTDA 482
RT++F N++ +V +T +L+T I + H + + R +++ F G V V TD
Sbjct: 499 RTLIFTNSIHSVRRLTPMLQTLNIPAHSLHSQMIQKARMRSIEKFSRTNNTGSVLVATDV 558
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
AARG+DI V VI +A ++HR GRTARA G +S+ ++V T R A
Sbjct: 559 AARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASG--SSILLCGPEEVVGTRRLVA 616
Query: 543 KL 544
K+
Sbjct: 617 KV 618
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 16 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 76 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 119 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 176 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 231
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 232 KLQQYYI 238
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 262 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 321
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 322 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 373
>gi|374335360|ref|YP_005092047.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372985047|gb|AEY01297.1| DEAD-box ATP dependent DNA helicase [Oceanimonas sp. GK1]
Length = 460
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 24/193 (12%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138
A +N T++ GL RL+RAL++ G P+ +Q ++ V++G D++ +++TGSGKT +Y
Sbjct: 1 MAQNNDTFRDFGLDTRLVRALDHQGLNTPTDIQLKAIPVVMAGFDLLASSKTGSGKTLAY 60
Query: 139 LVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
L+P +++L S+ PRA L+L P L QV +L+ ++ V
Sbjct: 61 LLPALQRLMKTRALSKRD--------PRA--LILAPTRELARQVYAQLRSLAGNS----V 106
Query: 199 RAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
+ GG+ + +PDVIV+TP L N++D R + G++ ++ DEAD
Sbjct: 107 NIALLLGGENFNDQLKSLRRQPDVIVATPGRLANHLDA----RSLMLNGLELLILDEADR 162
Query: 253 LLCGSFQNQVIRL 265
+L F Q+ R+
Sbjct: 163 MLDLGFAPQLERI 175
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF- 470
+A+ E L + ++F T + L+ + H DLS ER + + F
Sbjct: 238 QALLEHLLASEPYQQAIIFTATRADTERLASHLQQTELTTAALHGDLSQAERNRIMDAFA 297
Query: 471 QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+ + + + TD A+RG+D+ VS VI D A +++HR+GRT RAG G SL
Sbjct: 298 RGQHKLLITTDVASRGLDLLQVSLVINFDMPKQAEEYVHRIGRTGRAGASGTAVSLVGPR 357
Query: 531 NRDLVDTIRR 540
+ D + R
Sbjct: 358 DWDAFKRVER 367
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|41327776|ref|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens]
gi|119616689|gb|EAW96283.1| hCG27698, isoform CRA_c [Homo sapiens]
Length = 406
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V++ +
Sbjct: 85 ALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYI 311
YI
Sbjct: 241 YYI 243
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Query: 547 PV 548
PV
Sbjct: 387 PV 388
>gi|296210932|ref|XP_002752173.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Callithrix jacchus]
Length = 406
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V++ +
Sbjct: 85 ALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYI 311
YI
Sbjct: 241 YYI 243
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|16125088|ref|NP_419652.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 476
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ +++Q +F +AT+P K AG +L +NP +
Sbjct: 171 RKIAAQLTKNRQNLFFSATMPSEIGKLAGELL-----------------NNPVQVSVAPQ 213
Query: 401 VTVDTQVDA---LIEAVKER---LEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECY 452
T ++D IEA ++R E A+TS RT+VF T V K L AGIE
Sbjct: 214 ATTVERIDQRVLFIEAQRKRPLLAELFADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAA 273
Query: 453 CYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
H D + +R + L F K G V TD AARGID+ +VSHVI + ++H
Sbjct: 274 SIHGDKTQGQRERALAAF--KAGEMRALVATDIAARGIDVNDVSHVINYELPNVPEAYVH 331
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
R+GRTAR G+ G+ S + R+L+ I++A +
Sbjct: 332 RIGRTARKGKDGIAISFCADDERNLLKDIQKATR 365
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ L++AL G+ P+ +QA ++ VL GKD++ A+TG+GKT ++ +P++++
Sbjct: 4 FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D++P P R LVL P L Q+ A + G + +
Sbjct: 64 LA----------EDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMG---LSVHTIY 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + G DV+V+TP L++++ K V G + V DEAD +L F
Sbjct: 111 GGVKYGPQMKALAGGIDVLVATPGRLMDHMAEKS----AIVSGTEIFVLDEADQMLDLGF 166
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|440301111|gb|ELP93558.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 608
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 114/476 (23%), Positives = 204/476 (42%), Gaps = 79/476 (16%)
Query: 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167
S Q AS+ +L G D ++ A+TGSGKT +YL+P+I K+ + P R
Sbjct: 32 SHAQYASIPKILEGADCLLKAQTGSGKTLAYLLPVITKIL-----------ENHPNIKRT 80
Query: 168 P---SLVLCPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWPIGKP------DV 216
+L++ P L +QV + L+ ++ V V GG K ++
Sbjct: 81 DGIFALIMTPTRELTQQVFEVLTVLTTS----MIGFVPTIVVGGDSKKKEKARIRKGCNL 136
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
+V TP LL++I + +++ V++++ DEAD +L F+ V+++I + + +
Sbjct: 137 LVGTPGRLLDHIKSTQNLKLD---KVEFLILDEADRVLDAGFEESVLQIIERLNKERQTI 193
Query: 277 --SRMNESGVEK--PLEMDNSSLTQPDLQDEENLQDEYISDEG---------------NF 317
S V+K + ++N D ++ + + DE N
Sbjct: 194 LVSATLSDNVQKLASIALNNHVFIDGDARENAKDRKKAKMDEKFGKKEDKEEPKKIKENV 253
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP 377
E VE + E I+K+ ++V K + K+ A I K
Sbjct: 254 EEPEQVEKI--EKTEKPIEKQSEKQVEKPAKLDKK----AKMEKIKNK------------ 295
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
+AD L + LK+ +I V ++ LI ++ L ++ + +VF + + +V
Sbjct: 296 NADIAEEQTLTLPSS-LKQYYITVKDKNRLVYLIATLRTLLGKSSQ-CKVIVFFSCIPSV 353
Query: 438 ---YAVTKILKTAG-------IECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARG 486
YA+ LK + H DL+ ER+ L +F + G+ + TD ARG
Sbjct: 354 NYHYALFSELKFLNDTTLFQDTNLFRLHGDLTSVERSDGLKSFVKSDKGILLTTDVIARG 413
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
+D+ V ++Q D +++HR GRTAR G+ G ES + ++ +R+A
Sbjct: 414 VDLKGVDWILQYDPPGETSEYIHRSGRTARFGREGNALLFLLESEVEYIEMLRKAG 469
>gi|328874326|gb|EGG22691.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 712
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 42/220 (19%)
Query: 64 AAAVVSDKNGSSDTF--FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
+ ++++K+ +S+ D T++S+ L R+I+A++ G+ P+++QA S+ L G
Sbjct: 4 SKTLITEKSNNSNISESLIDGETTFESMCLDMRIIKAVKKIGYEHPTLIQAKSIPLSLQG 63
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA--PSLVLCPNVVLC 179
KD++ A TGSGKT +Y +P+++K+ A + K P+ A +++L P LC
Sbjct: 64 KDILAKARTGSGKTAAYTIPIVQKILMA------KQNTKIPSSKGAGVKAVILVPTKELC 117
Query: 180 EQ-----------------VVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPA 222
EQ VV + + S D ++R V PD+I+STP
Sbjct: 118 EQVQQNLLQICFYCTHLINVVHLGSEQSVDEQRGMLRDV------------PDIIISTPT 165
Query: 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
L+N++ + + ++ ++ +V DEAD++L +Q +
Sbjct: 166 RLVNHL---KNQNIKLDMSLEMLVIDEADLVLSYGYQEDI 202
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
ARGID NV VI DF + +++HRVGRTAR G+ S T+ N L+ I+R
Sbjct: 476 GVARGIDFKNVDIVINFDFPRTYKNYVHRVGRTARGNSKGVALSFVTKRNEPLLKKIQR 534
>gi|402885240|ref|XP_003906072.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Papio anubis]
Length = 406
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|365858292|ref|ZP_09398238.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363714432|gb|EHL97942.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 457
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW---RRVRKNYQRSKQYIFVAATLP 361
LQD + +G VE L + + + W +R+ +++Q +F +AT+P
Sbjct: 135 RLQDHVQTGAAKLQG---VEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQTLFFSATMP 191
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
K AG +LK D +S + R++++ I + + + L E ++E
Sbjct: 192 AEIAKIAGEMLK----DPAKVSVTPVSSTAERVEQRLIHIDASLKRNLLSELLRE----- 242
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
R +VFA T V K L GI + H D S +R + L F+ + + V T
Sbjct: 243 PGIGRALVFARTKHGADRVAKHLNADGIPAHAIHGDRSQGQRERALAEFRTGRAPILVAT 302
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
D A+RGID+ V+HV Q D + ++HR+GRTARAG G
Sbjct: 303 DIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASG 343
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 32/202 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL++ ++RAL G+ P+ +QA ++ VL+G+D++ A+TG+GKT ++ +PL+
Sbjct: 4 FAALGLAEPILRALAQEGYSTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPLLHH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L +D+ PR +L+L P L Q+ G L AV +
Sbjct: 64 L-----------ADRRAPAPRGGCRALILSPTRELASQIHDNIRGYGRFLG--LTSAV-I 109
Query: 204 CGGQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
GG G +P D++V+TP L +++ + ++GV+ +V DEAD +L
Sbjct: 110 FGGVG---ARPQVEALRRGVDILVATPGRLQDHVQTGAAK----LQGVEVLVLDEADQML 162
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F V RL ++ + + L
Sbjct: 163 DRGFWPAVKRLSSVMSKNRQTL 184
>gi|90076578|dbj|BAE87969.1| unnamed protein product [Macaca fascicularis]
Length = 255
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 40/266 (15%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
S S ++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ A
Sbjct: 9 SPTEASQPVMEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 68
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT ++ +P++ L TP R +LVL P L Q+ A
Sbjct: 69 ETGSGKTGAFALPILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEA 114
Query: 189 LSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L + G V++ + GG Q + KP +I++TP L+++++ + + R +
Sbjct: 115 LGSSIG---VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RAL 168
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDN 292
KY+V DEAD +L F+ +V +++ + D K++ ++ + ++ P++
Sbjct: 169 KYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 228
Query: 293 SSLTQPDLQDEENLQDEYISDEGNFE 318
SS Q E LQ YI F+
Sbjct: 229 SS----KYQTVEKLQQYYIFIPSKFK 250
>gi|410963866|ref|XP_003988480.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Felis catus]
Length = 406
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYV 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 14 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 73
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 74 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 116
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 117 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 173
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + F F K++ ++ + ++ P++ SS Q E
Sbjct: 174 NMDFETEVDKILKVNPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 229
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 230 KLQQYYI 236
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 260 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 319
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 320 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 371
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYV 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
Length = 622
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 9/206 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R + ++ Q + +AT+P+ + A+ K+ + + + + + ++
Sbjct: 288 REIMRSLPEKHQTLLFSATMPVEIE----ALAKEYLANPVQVKVGKVSSPTTNVSQTLVK 343
Query: 401 VT----VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
V+ +D +D L+E + + G T+VF V + L G+ H
Sbjct: 344 VSGSEKIDRLLDLLVEEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHG 403
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
S ER L NF+ + V TD A+RG+D+ VSHVI D + D++HR+GRT
Sbjct: 404 GHSQNEREAALQNFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTG 463
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRA 541
RAG G+ TS YT+ + LV IR+A
Sbjct: 464 RAGSTGIATSFYTDRDMFLVTNIRKA 489
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 70 DKNGSSDTFFADDNV-TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
D SSD+ A + ++ + L +++ + + RPS +QA ++ LSG+D++ A
Sbjct: 103 DVTVSSDSTAAPGPIESFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCA 162
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRM 185
ETGSGKT ++ +P+++ +P R +LVL P L +Q+ +
Sbjct: 163 ETGSGKTAAFTIPMLQHCLV------------QPPIRRGDGPLALVLAPTRELAQQIEKE 210
Query: 186 ANALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFV 239
A S + E L + V GG + ++ V+TP ID ++
Sbjct: 211 VQAFS-RSLESLKNCI-VVGGTNIEKQRSELRAGVEIAVATPGRF---IDHLQQGNTSLS 265
Query: 240 RGVKYVVFDEADMLLCGSFQNQV 262
R + YVV DEAD +L F+ Q+
Sbjct: 266 R-ISYVVLDEADRMLDMGFEPQI 287
>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
Length = 524
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +TWK LGL++ L +A + + PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 66 DQKLTWKDLGLNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFAL 125
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L EN P R +LVL P L Q+ AL + G ++
Sbjct: 126 PILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEALGSGIG---IKC 168
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 169 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIKYLVMDEADRIL 225
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q E
Sbjct: 226 NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVE 281
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 282 QLQQSYL 288
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ K R ++ +AT+ KK A LK P +S Y +L++ ++ +
Sbjct: 235 KILKVLPRERRTFLFSATMTKKVKKLQRASLKD--PVKVEVSNKYQTVE--QLQQSYLFI 290
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
V + L+ + E + M+F +T + +L+ G+ H +S
Sbjct: 291 PVKYKDVYLVHILNE-----LSGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQN 345
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 346 KRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 405
Query: 521 GLVTSLYTESNRDLVDTI 538
G +L ++ + +L I
Sbjct: 406 GKAITLVSQYDIELYQRI 423
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 37/225 (16%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ T+ SLGL L+ AL+ G+ +P+ +QA + L GKDV+ AETGSGKT ++ +P+
Sbjct: 95 SATFDSLGLISPLLEALKQVGYSKPTEIQAGIIPHALEGKDVIGVAETGSGKTAAFALPI 154
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++KL PR + VL P L Q+ + AL + G VR
Sbjct: 155 LQKLWDE---------------PRGLFACVLAPTRELAYQIAQQFEALGSAIG---VRCA 196
Query: 202 AVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL-- 254
+ GG Q +GKP +IV+TP L ++++ + + RG++Y+V DEAD LL
Sbjct: 197 TIVGGMDMMSQSIALGKPHIIVATPGRLNDHLENTKGFSL---RGLRYLVLDEADRLLDM 253
Query: 255 -CGSFQNQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMD 291
G +++++++ N F F +++++ + ++ P+ ++
Sbjct: 254 DFGPVIDKILKVLPRERNTFLFSATMSTKVAKLQRASLQNPVRVE 298
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++F TV ++ +L+ G H LS R L F+ G + + TD A+ G
Sbjct: 338 IIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGALNKFKAGGRSLLIATDVAS-G 396
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP V VI D T + D++HRVGRTARAG+ G +L T+ + +L+ I
Sbjct: 397 LDIPTVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELLQRI 448
>gi|388581211|gb|EIM21521.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 929
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 39/202 (19%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPL 142
+++S+GL+ L+R+L GF +P+ +Q ++ P+LS +D+V A TGSGKT +YL+PL
Sbjct: 90 SFQSMGLNPSLLRSLFLRGFNQPTPIQRLAIPPILSTPPRDLVGMARTGSGKTLAYLIPL 149
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL------SADNGEP 196
++KL + A SL+L P+ L Q++R+ L G+
Sbjct: 150 VQKLGA-----------QHSIRFGARSLILVPSRELALQILRVGKELVKGYKKEMGEGQE 198
Query: 197 LVRAVAVCGGQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYV 245
+R + GG+ PDVI++TP LL+ N+D ++ V+YV
Sbjct: 199 EMRWSVIVGGESLDDQFSLIASNPDVIIATPGRLLHLAVEMNLD---------LKSVEYV 249
Query: 246 VFDEADMLLCGSFQNQVIRLIN 267
VFDEAD L FQ Q+ LI+
Sbjct: 250 VFDEADRLFEMGFQLQLNELIS 271
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQEKGGV---FVCTD 481
+T++F T V + +LK AG + Y SL++ A+ L Q + GV V TD
Sbjct: 375 QTIIFTATKHHVEYLNTLLKAAGYAVAHVYG---SLDQTARQLQMDQFRRGVSSILVVTD 431
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
AARGID+P +VI DF T A F+HRVGRTARAG+ G S T S
Sbjct: 432 VAARGIDLPGCENVINYDFPTGARIFIHRVGRTARAGRKGTAWSFITNS 480
>gi|397169877|ref|ZP_10493304.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
gi|396088405|gb|EJI85988.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
Length = 444
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 108/190 (56%), Gaps = 24/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ +GL RL+R++++ GF RP+ +Q ++ V+ G+D++++++TGSGKT +YL+P++
Sbjct: 1 MQFQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMM 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + S+ A +L+L P L +QV A+ V AV +
Sbjct: 61 QRLLKSRALSKQD----------ARALILTPTRELAKQVYAQLRLFVANTP---VTAVLL 107
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG+ + +PD+IV+TP +++++ K F++G++ ++ DEAD +L
Sbjct: 108 VGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKS----VFLQGLEMLILDEADRMLDLG 163
Query: 258 FQNQVIRLIN 267
F Q+ +IN
Sbjct: 164 FLPQLT-IIN 172
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ +L + ++F T D + + + A + L+ +R K + +F
Sbjct: 234 EALLAKLLQQESLKQLIIFTATRDDAGRLAEFCQQAALPAIGLSARLNQAQRNKVMQDFA 293
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
K V V TD A+RG+D+ VSHVI D +++HR+GRT RAG G SL
Sbjct: 294 SGKYQVLVTTDLASRGLDLLQVSHVINFDLPKHPEEYVHRIGRTGRAGAKGTAISL 349
>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 461
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 5/202 (2%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R++ + +++Q +F +AT+P K ++ Q + +S R+++
Sbjct: 170 LRKINELTPKTRQTLFFSATMP----KAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLF 225
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V D + L + R E + R +VFA T V K L GI H + S
Sbjct: 226 MVQQDEKQSLLELILSGRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKS 285
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R + L F+ K V V TD AARGIDIP VSHVI + ++HR+GRTARAG
Sbjct: 286 QPQRERALDEFKRAKTPVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAG 345
Query: 519 QYGLVTSLYTESNRDLVDTIRR 540
G+ + E R + IR+
Sbjct: 346 ADGIAIAFCAEDERQYLKDIRK 367
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 17/185 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS +++AL+ G+ P+ +QA ++ PVL G+D++ A+TG+GKT ++++P I++
Sbjct: 4 FTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN---ALSADNGEPLVRAVA 202
L A EN K LVL P L Q+ + A AL+ + +V +
Sbjct: 64 LREA----ENQTPFKS-----CRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTS 114
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
V + D++V+TP LL+ ID +R + V+ +V DEAD +L F +
Sbjct: 115 VNKDRNKLHRGTDILVATPGRLLDLID----QRAFTLDKVEILVLDEADQMLDLGFIH-A 169
Query: 263 IRLIN 267
+R IN
Sbjct: 170 LRKIN 174
>gi|393221493|gb|EJD06978.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 496
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/436 (24%), Positives = 177/436 (40%), Gaps = 80/436 (18%)
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181
+DV +A TGSGKT +Y++P++E L + T RA LV+ P L Q
Sbjct: 42 QDVCASAPTGSGKTLAYVIPIVEILSARIA-----------TKLRA--LVVLPTRDLVLQ 88
Query: 182 VVRMANALSADNGEPLVRAV-----AVCGGQGWP---------IGKPDVIVSTPAALLNN 227
V + A+ G + A A GQ P K D+++ TP L+++
Sbjct: 89 VQEVFEAVGKGRGLKIGVATGQHSFAHEQGQLVPDQDKGSQGGASKVDILICTPGRLMDH 148
Query: 228 IDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLS------RMNE 281
++ ++ +R ++V DEAD LL SFQ+ + ++++ R + +S +N+
Sbjct: 149 LNGTPGFTLQHLR---FLVIDEADRLLAQSFQDWLAQVLSALRPPTQSISDGVSSLSLNK 205
Query: 282 SGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341
G L + S+ L +I + + S + L + +D
Sbjct: 206 PGASSILGFGHDSIAPAFL--------PHIPTDLDDPKHSSCQKLL----FSATLTRDPA 253
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ R +Y V AT I+ + A L G P LKE +I
Sbjct: 254 RIAALGLRDPKYFVVQATTSIDRDTSGPAAL-----------GMENFAMPPSLKEHYITT 302
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK---------------T 446
+ L + R S +VF + ++ + K+L+
Sbjct: 303 PTARKPLILFHLLHNR-----GISNALVFTKSAESTARLVKLLEYFEVAYLALSDTVNPP 357
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
I Y DL ER L F+++ + VC+D ARG+DI +V+HV+ D
Sbjct: 358 KRIVAQAYSSDLPSGERKNVLEKFKKQEIDILVCSDLVARGLDISHVAHVVSYDAPVDIR 417
Query: 506 DFLHRVGRTARAGQYG 521
++HR GRTARAG+ G
Sbjct: 418 KYVHRAGRTARAGRAG 433
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 40/254 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 113 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 172
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 173 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 215
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 216 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 272
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 273 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 328
Query: 305 NLQDEYISDEGNFE 318
LQ YI F+
Sbjct: 329 KLQQYYIFIPSKFK 342
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 359 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 418
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 419 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 470
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 79
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 80 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 122
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 123 AVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 179
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 180 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 235
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 236 KLQQYYL 242
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 266 IIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 326 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 377
>gi|194763885|ref|XP_001964063.1| GF21359 [Drosophila ananassae]
gi|190618988|gb|EDV34512.1| GF21359 [Drosophila ananassae]
Length = 567
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 22/198 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A V + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y
Sbjct: 5 AQTAVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYA 64
Query: 140 VPLIEK-LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+PLI+K L + L SE S ++VL P LC Q + L+ G+ ++
Sbjct: 65 LPLIQKILNSKLNASEQCVS----------AVVLAPTKELCRQSRAVIEQLAESCGK-VI 113
Query: 199 RAVAVCGG------QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
R + G Q + +PD++VSTP+ LLN+ D +++ V+ +V DEAD
Sbjct: 114 RVADIAGSSSDAATQRHALAERPDIVVSTPSKLLNHADAGGVVDLKY---VETLVVDEAD 170
Query: 252 MLLCGSFQNQVIRLINMF 269
++ ++ +LI F
Sbjct: 171 LMFAFGYEKDFKKLIKHF 188
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 93/244 (38%), Gaps = 54/244 (22%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP---- 392
+KD++++ K++ Q I V+ATL + + G L L P
Sbjct: 178 EKDFKKLIKHFPPIYQAILVSATLSDDVVRMKGLCLNNPVT---------LKLEEPELVP 228
Query: 393 --RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
+L + I + + L +K RL G +T++F N +D Y V L+ GI
Sbjct: 229 QDQLTHQRILAEENDKPAILYALLKLRLVRG----KTIIFVNNIDRCYKVRLFLEQFGIR 284
Query: 451 CYCYHKDLSLEERAKTLVNFQEKG--GVFVCTD--------------------------- 481
+ +L R T+ F KG + + +D
Sbjct: 285 ACVLNSELPANIRIHTISQFN-KGTYDIIIASDEHHLEQPGGKSSAASSSSSGKRKSPRS 343
Query: 482 -----AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVD 536
+A+RGID V++V+ DF ++HR GRTAR G V S + + D
Sbjct: 344 GDFESSASRGIDFQCVNNVLNFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAAVND 403
Query: 537 TIRR 540
+ +
Sbjct: 404 AVEK 407
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+++AL++ ++ L A+ SR MVF +VD+ AV L + C YH ++ E+R K
Sbjct: 346 KLEALVQVLEPAL---AKGSRCMVFCRSVDSCRAVDHYLNEMDVHCVNYHGEVPAEDRIK 402
Query: 466 TLVNFQEKGG-----VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
L F+ + G +CTD AARG+D+ V HVI DF ++++D+LHR GRTAR G
Sbjct: 403 NLAKFKIEDGEGPVPALICTDLAARGLDL-QVDHVINFDFPSTSIDYLHRSGRTARMGLK 461
Query: 521 GL 522
GL
Sbjct: 462 GL 463
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGL++ L A+E P+ VQ ++ +L G++VV+A+ TGSGKT +Y++PL++
Sbjct: 102 SFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLPLVQ 161
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM--ANALSADNGEPLVRAVA 202
+ S + + +LVLCP L EQV+ + +L + R+
Sbjct: 162 VYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSHHARFRSAM 221
Query: 203 VCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + G D++V TP LL +++ + F +KYVV DEAD +
Sbjct: 222 ISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEG---NLAF-GDIKYVVIDEADTMFDR 277
Query: 257 SFQNQVIRLINMFR 270
F ++ ++I+ R
Sbjct: 278 GFGPELKKIIDPLR 291
>gi|393762574|ref|ZP_10351201.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392606809|gb|EIW89693.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 444
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 105/185 (56%), Gaps = 23/185 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ +GL RL+R++++ GF RP+ +Q ++ V+ G+D++++++TGSGKT +YL+P++
Sbjct: 1 MQFQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMM 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L + S+ A +L+L P L +QV A+ V AV +
Sbjct: 61 QRLLKSRALSKQD----------ARALILTPTRELAKQVYAQLRLFVANTP---VTAVLL 107
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG+ + +PD+IV+TP +++++ K F++G++ ++ DEAD +L
Sbjct: 108 VGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKS----VFLQGLEMLILDEADRMLDLG 163
Query: 258 FQNQV 262
F Q+
Sbjct: 164 FLPQL 168
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ +L + ++F T D + + + AG+ L+ +R K + +F
Sbjct: 234 EALLAKLLQQESLKQLIIFTATRDDAGRLAEFCQQAGLPAIGLSARLNQAQRNKVMQDFA 293
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
K V V TD A+RG+D+ VSHVI D +++HR+GRT RAG G SL
Sbjct: 294 SGKYQVLVTTDLASRGLDLLQVSHVINFDLPKHPEEYVHRIGRTGRAGAKGTAISL 349
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQVEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQT 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 494
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 28/213 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D R+ K ++Q +F +AT+P P+ ++ +LH NP R++
Sbjct: 166 DIERICKLVPFTRQTLFFSATMP---------------PEITRLTETFLH--NPARVEVA 208
Query: 398 WIEVTVDTQVDALI---------EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
T T LI E ++ L A+ ++F N V + K L T G
Sbjct: 209 RASSTATTITQGLIASAPGPAKRETLRRLLRSAADFKNAIIFCNRKRDVALLHKSLLTHG 268
Query: 449 IECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H DL R +L F+ + + VC+D AARG+DIP+VSHV+ D T A D+
Sbjct: 269 FNAGALHGDLDQRARMASLDAFKTGEVALIVCSDVAARGLDIPDVSHVLNFDVPTHAEDY 328
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+HR+GRT RAG+ G+ ++ T++++ + I +
Sbjct: 329 VHRIGRTGRAGKSGVAITIVTKADQKHIAEIEK 361
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ LGLS ++++A+E SG+ P+ +QA ++ L+G+DV+ A+TG+GKT ++ +P++
Sbjct: 1 MTFEELGLSAKVLQAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPLVR 199
+L + PR +L+L P L QV VR N L+
Sbjct: 61 SRLEQGRARARM---------PR--TLILEPTRELAAQVEESFVRYGVNHKV-NVALLIG 108
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + DV+++TP LL+ + R + G++ +V DEAD +L F
Sbjct: 109 GVSFADQEAKITRGADVLIATPGRLLDFAE----RGKLLLTGIEILVIDEADRMLDMGFI 164
Query: 260 NQVIRLINMFRFDEK----------QLSRMNESGVEKPLEMD 291
+ R+ + F + +++R+ E+ + P ++
Sbjct: 165 PDIERICKLVPFTRQTLFFSATMPPEITRLTETFLHNPARVE 206
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 10/185 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ KQ + +AT+P ++ G LK PD + P++K++ I V + ++
Sbjct: 174 KEKQTLLFSATMPYEIRRLIGRYLK---PDYKNVKVGK-QLITPKVKQRIILVRSEDKIK 229
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
AL + +KE E T+VF T + K L+ GI H DLS +R +
Sbjct: 230 ALEKLLKEH-----EGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMR 284
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+E K V V TD AARGIDI +V VI + + ++HR+GRT RAG+ GL SL
Sbjct: 285 AFREGKVKVLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLV 344
Query: 528 TESNR 532
E +
Sbjct: 345 AEPEK 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L +R+ ++LE GF P+ +Q ++ L G D+V A+TG+GKT ++ +PL+ +
Sbjct: 8 LDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGIS--- 64
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG---- 206
P ++VL P L QV + + + G V A + GG
Sbjct: 65 -----------PRERGVKAIVLTPTRELAIQVAHELSLIGKNKG---VSAFPIYGGVSIE 110
Query: 207 ---QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G+ +IV TP + + I+ R + + V+Y V DEAD +L F
Sbjct: 111 RQINALKRGRHQIIVGTPGRVKDLIN----RGVLRLDRVRYAVLDEADQMLDMGF 161
>gi|398382811|ref|ZP_10540892.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397726211|gb|EJK86652.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 460
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
+RV K R +Q +F +AT+P K A+ Q D +S R++++
Sbjct: 169 LKRVAKMLPRDRQNLFFSATMP----KEIEALAAQFLNDPVKVSVAPQSTTAERVRQQMT 224
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + AL+ V + E R ++F T V + L+ AGI+ + H + S
Sbjct: 225 FVN-QAEKQALLHIVLKT----EEIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKS 279
Query: 460 LEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R L F Q K + V TD AARGID+ VSHVI + ++HR+GRTARAG
Sbjct: 280 QGQRTTALQAFRQGKVKLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAG 339
Query: 519 QYGLVTSLYTESNRDLVDTIRRAAKL 544
G+ S + R + I RA K+
Sbjct: 340 ADGIAISFVADDERPYLKAIERATKV 365
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + LGLS+ +++AL + P+ +Q ++ +L G+D+ A+TG+GKT ++ +P +
Sbjct: 1 MQFNELGLSEPILKALSAKNYATPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ + +PTP + LVL P L Q+ + D G + +V
Sbjct: 61 DYFA----------RNPKPTPIKGCRMLVLSPTRELAAQIAQSFR----DYGRFMRLSVE 106
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PIGK D++V+TP LL+ ID +R ++ + V DEAD ++
Sbjct: 107 TVFG-GVPIGKQIRALSAGVDIVVATPGRLLDLID----QRAFTIKDTEIFVLDEADQMM 161
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F + + R+ M D + L
Sbjct: 162 DMGFIHPLKRVAKMLPRDRQNL 183
>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
Length = 522
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 40/252 (15%)
Query: 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKT 135
D D +TWK LGL++ L +A + + PS +Q ++ L GKDV+ AETGSGKT
Sbjct: 60 DDTAEDQKLTWKDLGLNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKT 119
Query: 136 HSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195
++ +P++ L EN P R +LVL P L Q+ AL + G
Sbjct: 120 GAFALPILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEALGSGIG- 164
Query: 196 PLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
++ V GG QG + KP +I++TP L+++++ + + + +KY+V DE
Sbjct: 165 --IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIKYLVMDE 219
Query: 250 ADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPD 299
AD +L F+ ++ +++ + F F K++ ++ + ++ P++++ S+
Sbjct: 220 ADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----K 275
Query: 300 LQDEENLQDEYI 311
Q E LQ Y+
Sbjct: 276 YQTVEQLQQSYL 287
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 311 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 370
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L T+ + +L I
Sbjct: 371 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 422
>gi|410479720|ref|YP_006767357.1| DEAD/DEAH box helicase [Leptospirillum ferriphilum ML-04]
gi|406774972|gb|AFS54397.1| DEAD/DEAH box helicase domain protein [Leptospirillum ferriphilum
ML-04]
Length = 444
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 19/216 (8%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAG-----AVLKQMFPDADWISGNYLHFHNPR 393
D + + + +Q + +AT P ++ A AV+ ++ P+ +++H
Sbjct: 166 DINTIVRQLPKGRQSLLFSATCPPRIQELAATFQNDAVIVRVEPERK--GSDHIH----- 218
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
++WI V+ +Q L++ V + E +ET + ++F T + ++ L AG
Sbjct: 219 --QEWITVSHGSQKLGLLKKVLD--EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDA 274
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H D S R + L F+ V V TD AARG+DI ++HVI D +A D++HR+G
Sbjct: 275 LHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIG 334
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG+ G S + ++RD+V +I A G+P+
Sbjct: 335 RTGRAGRTGRALSFFHPADRDIVRSIETMA--GKPI 368
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 36/187 (19%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+++LGLS ++RAL + G P+ +Q S+ V+ G+D++ A+TG+GKT +L+P++
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
K+ R +LVL P L Q+ + A D + L AV
Sbjct: 61 HKIAEGRRHGI-----------RNRALVLSPTRELATQIHQAAK----DYAKYLHTNAVL 105
Query: 203 VCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ GG + W D++V+TP LL+++ RR + V+ DEAD
Sbjct: 106 LVGGVDFIRQERNLKRNW-----DIVVATPGRLLDHV----RRNNLTLANTSLVIIDEAD 156
Query: 252 MLLCGSF 258
+L F
Sbjct: 157 RMLDMGF 163
>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
Length = 444
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 19/216 (8%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAG-----AVLKQMFPDADWISGNYLHFHNPR 393
D + + + +Q + +AT P ++ A AV+ ++ P+ +++H
Sbjct: 166 DINTIVRQLPKGRQSLLFSATCPPRIQELAATFQNDAVIVRVEPERK--GSDHIH----- 218
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
++WI V+ +Q L++ V + E +ET + ++F T + ++ L AG
Sbjct: 219 --QEWITVSHGSQKLGLLKKVLD--EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDA 274
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H D S R + L F+ V V TD AARG+DI ++HVI D +A D++HR+G
Sbjct: 275 LHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIG 334
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG+ G S + ++RD+V +I A G+P+
Sbjct: 335 RTGRAGRTGRALSFFHPADRDIVRSIETMA--GKPI 368
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 36/187 (19%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+++LGLS ++RAL + G P+ +Q S+ V+ G+D++ A+TG+GKT +L+P++
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
K+ R +LVL P L Q+ + A D + L AV
Sbjct: 61 HKIAEGRRHGI-----------RNRALVLSPTRELATQIHQAAK----DYAKYLHTNAVL 105
Query: 203 VCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ GG + W D++V+TP LL+++ RR + V+ DEAD
Sbjct: 106 LVGGVDFIRQERNLKRNW-----DIVVATPGRLLDHV----RRNNLTLANTSLVIIDEAD 156
Query: 252 MLLCGSF 258
+L F
Sbjct: 157 RMLDMGF 163
>gi|119191696|ref|XP_001246454.1| hypothetical protein CIMG_00225 [Coccidioides immitis RS]
gi|118575169|sp|Q1EB38.1|DBP10_COCIM RecName: Full=ATP-dependent RNA helicase DBP10
gi|392864317|gb|EAS34854.2| ATP-dependent RNA helicase DBP10 [Coccidioides immitis RS]
Length = 927
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 83 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T + L+L P+ L Q +++ L G L + V + G
Sbjct: 143 LKS------------HSTKVGSRGLILSPSRELALQTLKVVKELG--RGTDL-KCVLLVG 187
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ G PD+I++TP L+ N+D + +KYVVFDEAD L
Sbjct: 188 GDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 238
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ +F K L +G+++P + +D S PDLQ
Sbjct: 239 EMGFAAQLTEILHGLPQSRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQ 297
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++F T V + +L+ +G + L R + NF+ + V TD AAR
Sbjct: 365 TIIFVATKHHVDYIASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAAR 424
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP + +VI DF + A F+HRVGRTARAG+ G SL +++
Sbjct: 425 GIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDAD 470
>gi|340373969|ref|XP_003385512.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Amphimedon queenslandica]
Length = 648
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 12/213 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN-PRLKEKWI 399
R++ + +Q + +AT P + AG LK + + S HN ++ E
Sbjct: 297 RKIFDQIRPDRQVLMWSATWPKEVQGLAGDFLKN-YIQVNIGSLELCANHNITQVVEICE 355
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E ++++++L+E++ G + ++T++F T V +T+ L+ G C H D
Sbjct: 356 EFQKESKLNSLLESI-----MGQKENKTIIFVETKRRVDEITRKLRYGGWPAICIHGDKV 410
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER L F+ K + + TD A+RG+D+ ++ +VI DF + D++HR+GRTARA
Sbjct: 411 QTEREWVLNEFRSGKAPILLATDVASRGLDVTDIKYVINFDFPGNTEDYVHRIGRTARAK 470
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G S +T+ N +DL+D +R A + P
Sbjct: 471 NTGTAYSFFTKQNARQAKDLLDILREAGQSINP 503
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 110/279 (39%), Gaps = 58/279 (20%)
Query: 34 NSAPSSFYPLRVRFLRLNQWKGRPFR-------------------GFAAAAAVVSDKNGS 74
NS PS ++ R + L+ + R R A + V++ S
Sbjct: 54 NSGPSGYHKERSDYRNLDTYVPRKTRWDTEKLPSFRKNFFREHPNSVARPQSEVAEYCRS 113
Query: 75 SDTFFADDNV-----TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
+ F N+ ++ + + ++ GF P+ +QA LSG DVV A+
Sbjct: 114 RNMFVKGQNIPKPCLKFEEANFPEYMYDVMKRQGFVEPTPIQAQGWSMALSGSDVVGIAQ 173
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT +Y +P L EN ++ P LVL P L QV +
Sbjct: 174 TGSGKTLAYSLP-------GLIHIENQPRLQKGEGPIV--LVLAPTRELAIQVQNVVQEY 224
Query: 190 SADNGEPLVRAVAVCGGQGWPIGKPDV------------IVSTPAALLNNIDPKRRRRME 237
S G +R V G G P V +++TP L++ ++ +
Sbjct: 225 SKVVG---LRTCCVYG------GAPKVPQLREISSGCHFVIATPGRLIDFMESGKVS--- 272
Query: 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
++ Y+V DEAD +L F+ Q+ ++ + R D + L
Sbjct: 273 -LKRCTYLVLDEADRMLDMGFEPQIRKIFDQIRPDRQVL 310
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V++ +
Sbjct: 85 ALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYI 311
YI
Sbjct: 241 YYI 243
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H ++ +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|392396591|ref|YP_006433192.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527669|gb|AFM03399.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 437
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 29/224 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ L+ +L+ A+E +G+ +PS +Q ++ +L+G DV+ A+TG+GKT ++++PL+
Sbjct: 1 MQFEDFKLNRQLLNAIEEAGYEKPSPIQEQAIPLLLAGHDVIGVAQTGTGKTAAFMLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL A G++ PRA L+L P L Q+ LS +RAVA+
Sbjct: 61 MKLKYAQGEN-----------PRA--LILAPTRELVIQIHEHFEMLSKYTD---LRAVAL 104
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG G I + D+I++TP LL D R + +R +K ++ DEAD +L
Sbjct: 105 YGGSG-SIKRQLEQVREGMDLIIATPGRLL---DIYERNELN-LRQIKTMIMDEADRILD 159
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
F Q+ RL+ + ++Q + + + EK +++ + LT P+
Sbjct: 160 MGFMPQINRLLEIISSKKRQNALFSATMPEKVVKLTHDFLTFPE 203
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 18/201 (8%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV-TVDTQV 407
+ +Q +AT+P K L FP+ IS ++ +++K+ EV T++
Sbjct: 176 KKRQNALFSATMPEKVVKLTHDFL--TFPEEINIS--HVAVTAETVEQKYYEVPNFRTKI 231
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL-KTAGIECYCYHKDLSLEERAKT 466
+ L +K++ F ++ +VF T D V K L + H + R+
Sbjct: 232 NLLDYLLKDKEVF----NKVIVFTRTKDVANNVYKFLGRKVDDSVKVIHSNKDQNTRSNA 287
Query: 467 LVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV 523
+F K G + V TD AARG+D+ +VSHVI + D++HR+GRT RA + G+
Sbjct: 288 FNDF--KNGDIRILVATDVAARGLDVSDVSHVINFEVPKQYDDYVHRIGRTGRAEKEGIA 345
Query: 524 TSLYTESNRDLVDTIRRAAKL 544
+ +N V I+R KL
Sbjct: 346 ITF---ANVLDVHHIKRIEKL 363
>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
Length = 525
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 126/247 (51%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ +TWK LGL+D L +A + + PS +Q ++ L GKDV+ AETGSGKT ++ +
Sbjct: 68 NEKLTWKDLGLNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFAL 127
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L EN P R +LVL P L Q+ AL + G ++
Sbjct: 128 PILHALL------EN--------PQRFFALVLTPTRELAFQIGEQFEALGSSIG---IKC 170
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L
Sbjct: 171 CVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KSIKYLVMDEADRIL 227
Query: 255 CGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q E
Sbjct: 228 NMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVE 283
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 284 QLQQYYL 290
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 314 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILISTDVASRG 373
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L ++ + +L I
Sbjct: 374 LDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 425
>gi|348690718|gb|EGZ30532.1| hypothetical protein PHYSODRAFT_477816 [Phytophthora sojae]
Length = 690
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 129/252 (51%), Gaps = 41/252 (16%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENS------GFGRPSIVQAASVGPVLSGKDVVIA 127
SS+ FA + T++S+ ++++L+ L+ GF RP+ VQ ++ VL G D+++
Sbjct: 97 SSEKIFAAN--TFESMNMAEKLVNVLKKDASCGGFGFARPTNVQVQTIPSVLKGNDILVK 154
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187
+ETGSGKT SYL+P+++KL S S + +LVL P LC Q++ AN
Sbjct: 155 SETGSGKTLSYLLPIVQKL--------QSVSPRIQRQDGCMALVLAPTRELCTQIMETAN 206
Query: 188 ALSADNGEPLVRAV--AVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFV 239
L +P V V A+ GG+ K ++++TP L +++ + +
Sbjct: 207 KLI----QPFVFLVPGAIIGGEKKKAEKARLRKGITILIATPGRLADHL--VNTQSFNYT 260
Query: 240 RGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMN-------ESGVEKPLEMDN 292
+ ++++V DEAD LL F+ Q+ +++++ + R N SGV++ +M
Sbjct: 261 Q-LQFLVLDEADRLLDMGFEKQITQILSILDGQKSAKKRQNILVSATINSGVQQLAKM-- 317
Query: 293 SSLTQPDLQDEE 304
SL+ P L D +
Sbjct: 318 -SLSNPVLIDAD 328
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 455 HKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H ++ +ER T +F GV +CTD AARG+++P V ++Q D T D++HRVGR
Sbjct: 450 HGNIPQQERVTTFKSFCSSSSGVLLCTDVAARGLNLPTVKWIVQYDPPTETRDYVHRVGR 509
Query: 514 TARAGQYG 521
TAR+G G
Sbjct: 510 TARSGNQG 517
>gi|301765214|ref|XP_002918023.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Ailuropoda melanoleuca]
Length = 406
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|303313411|ref|XP_003066717.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106379|gb|EER24572.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 936
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 92 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 151
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T + L+L P+ L Q +++ L ++ V + G
Sbjct: 152 LKS------------HSTKVGSRGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVG 196
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ G PD+I++TP L+ N+D + +KYVVFDEAD L
Sbjct: 197 GDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 247
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ +F K L +G+++P + +D S PDLQ
Sbjct: 248 EMGFAAQLTEILHGLPQSRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQ 306
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++F T V V +L+ +G + L R + NF+ + V TD AAR
Sbjct: 374 TIIFVATKHHVDYVASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAAR 433
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP + +VI DF + A F+HRVGRTARAG+ G SL +++
Sbjct: 434 GIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDAD 479
>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 493
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
+Q + +AT+P KK A +KQ P I G R+++ + V + DA
Sbjct: 176 QRQVLLFSATMPDLVKKLAHRFMKQ--PPHIKIEGKQKTVE--RIEQFYYVVNQSDKTDA 231
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ +++ F T+VFANT V +T L+ G+ + DLS +R + +
Sbjct: 232 LVDVLEQEQPF-----LTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQ 286
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E + + TD AARG+D+ V+HVI D ++HRVGRT RAGQ G SL +
Sbjct: 287 FREIRFQFLIATDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLIS 346
Query: 529 ESNRDLVDTIRRAAK 543
++L+ +A K
Sbjct: 347 PRQKNLMARFAKATK 361
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ S G L++ +++ + P+ +Q ++ ++ GKD++ A+TG+GKT ++++P++
Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
L D + +L+L P L Q+ + L G+ L V +++
Sbjct: 64 ALDEGKRDIQ--------------ALILTPTRELSIQIAKEVEKL----GKHLNVNVLSL 105
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G G I K ++V TP +L+++ +R + F R + +V DEAD ++
Sbjct: 106 HG--GTDIDKQLSKLKETVQIVVGTPGRVLDHM---KRGSLHFGR-ISTLVLDEADKMME 159
Query: 256 GSFQNQVIRLI 266
F V ++I
Sbjct: 160 MGFLEDVEQVI 170
>gi|124487974|gb|ABN12070.1| putative RNA-dependent helicase p68 [Maconellicoccus hirsutus]
Length = 328
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + + +Q + +AT P + A L + + + S HN R + I+
Sbjct: 114 RKIIEQIRPDRQVLMWSATWPKEVRTLAEDFLHKKYIQLNVGSLTLSANHNIR---QHID 170
Query: 401 VTVDTQVDALIEAVKERLEFG-AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + + + + + E E G E ++T+VFA T V A+T+ ++ AG+ H D S
Sbjct: 171 VCTEDEKENKLMGLLE--EIGNQEENKTIVFAETKKKVDALTRKIRNAGVPVVGIHGDKS 228
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R +L F+ + V V TD AARG+D+ +V +VI DF S+ D++HR+GRT R+
Sbjct: 229 QTDRDYSLNAFRSGRAAVLVATDVAARGLDVDDVKYVINYDFPNSSEDYIHRIGRTGRSS 288
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
Q G + +T++N +DLV+ ++ A + P
Sbjct: 289 QTGTSYAFFTKNNSRLAKDLVNVLKEANQQVNP 321
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 170 LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-------QGWPIGKPDVIVSTPA 222
LVL P L +Q+ +A+ VR+ + GG + +GK +++++TP
Sbjct: 22 LVLAPTRELAQQIKIVASQYGTSTH---VRSTCIFGGAAKGPQARDLMVGK-EIVIATPG 77
Query: 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
LL+ + +R Y+V DEAD +L F+ Q+ ++I R D + L
Sbjct: 78 RLLDFLQTNATN----LRRTTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 127
>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 511
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 109/187 (58%), Gaps = 23/187 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ +LGL+ +++A++++G+ PS +QA ++ L+G D++ +A+TG+GKT ++++P ++
Sbjct: 19 TFATLGLNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQ 78
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L E++ K P LVL P L +QV AN + V+ V++
Sbjct: 79 RLSV-----ESAVRSKGPR-----VLVLTPTRELAQQVSDAANKYGKNM---RVKVVSIL 125
Query: 205 GGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG +P+ G D++V+TP L+++I+ R R++F R ++ +V DEAD +L F
Sbjct: 126 GGMPYPLQNKLLSGFVDILVATPGRLIDHIE---RGRIDFSR-LEMLVLDEADRMLDMGF 181
Query: 259 QNQVIRL 265
+ V R+
Sbjct: 182 IDDVERI 188
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ ER +TL+N + V V TD AARGID+ ++HVI D A D++HR+GRT
Sbjct: 294 DMNQRERNRTLLNLRRGNVRVLVATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTG 353
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
R G G+ S SNRD + + GQP+
Sbjct: 354 RGGASGIAVSF--ASNRDAMHLKKIERYTGQPI 384
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LG++D L A E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P+++
Sbjct: 20 TFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQ 79
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L +P R +LVL P L Q+ AL + G V++ +
Sbjct: 80 TLLE--------------SPQRLYALVLTPTRELAFQISEQFEALGSSIG---VKSAVIV 122
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 123 GGIDMMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RAIKYLVMDEADRILNMDF 179
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 180 ETEVDKILKVIPRDRKTFLFSATMTKKVHKLQRAALKDPVKCAVSS----KYQTVEKLQQ 235
Query: 309 EYI 311
Y+
Sbjct: 236 FYV 238
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + V +L+ G H + +R L F+ K + + TD A+RG
Sbjct: 262 MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLATDVASRG 321
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + ++ + +L I
Sbjct: 322 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|453075407|ref|ZP_21978194.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
gi|452763129|gb|EME21412.1| dead/deah box helicase [Rhodococcus triatomae BKS 15-14]
Length = 587
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D+ T+ LG+ DR++RAL + G+ PS +QAA++ P+++G DVV A+TG+GKT ++ VP
Sbjct: 13 DSTTFADLGIDDRVLRALNDVGYESPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAVP 72
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++ ++ D+E R +LVL P L QV SA P ++ +
Sbjct: 73 ILSRI-----DTEQK---------RPQALVLAPTRELALQVAEAFGKYSAHI--PGLQVL 116
Query: 202 AVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GGQ + + VIV TP ++++++ + ++ + Y+V DEAD +L
Sbjct: 117 PIYGGQSYGVQLSGLRRGAQVIVGTPGRVIDHLE---KGTLDLTH-LDYLVLDEADEMLK 172
Query: 256 GSFQNQVIRLI 266
FQ V +++
Sbjct: 173 MGFQEDVEKIL 183
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 12/213 (5%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D ++ KQ +AT+P +K + KQ D I+ + +
Sbjct: 176 QEDVEKILAETPEYKQVALFSATMPPAIRK----ISKQYLHDPVEITVKGKTSTATNITQ 231
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W++V ++DAL + E +F A ++F T A + + L+ G +
Sbjct: 232 RWVQVAHQRKLDALTR-ILEVEQFEA----MIIFVRTKQATEDLAERLRARGFSAAAING 286
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D+ +R +T+ + + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 287 DIVQAQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 346
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G R L+ I RA + QP+
Sbjct: 347 RAGRTGDALLFVAPRERHLLKAIERATR--QPL 377
>gi|348569356|ref|XP_003470464.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Cavia porcellus]
Length = 406
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFAL 79
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 80 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 122
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 123 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 179
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 180 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 235
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 236 KLQQYYL 242
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 251 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 310
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 311 GKAITFVTQYDVELFQRI 328
>gi|320036334|gb|EFW18273.1| ATP-dependent RNA helicase DBP10 [Coccidioides posadasii str.
Silveira]
Length = 927
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 83 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 142
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T + L+L P+ L Q +++ L G L + V + G
Sbjct: 143 LKS------------HSTKVGSRGLILSPSRELALQTLKVVKELG--RGTDL-KCVLLVG 187
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ G PD+I++TP L+ N+D + +KYVVFDEAD L
Sbjct: 188 GDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 238
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ +F K L +G+++P + +D S PDLQ
Sbjct: 239 EMGFAAQLTEILHGLPQSRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQ 297
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++F T V V +L+ +G + L R + NF+ + V TD AAR
Sbjct: 365 TIIFVATKHHVDYVASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAAR 424
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP + +VI DF + A F+HRVGRTARAG+ G SL +++
Sbjct: 425 GIDIPILENVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDAD 470
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 19/216 (8%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAG-----AVLKQMFPDADWISGNYLHFHNPR 393
D + + + +Q + +AT P ++ A AV+ ++ P+ +++H
Sbjct: 166 DINTIVRQLPKGRQSLLFSATCPPRIQELAATFQNDAVIVRVEPERK--GSDHIH----- 218
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
++WI V+ +Q L++ V + E +ET + ++F T + ++ L AG
Sbjct: 219 --QEWITVSHGSQKLGLLKKVLD--EGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDA 274
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H D S R + L F+ V V TD AARG+DI ++HVI D +A D++HR+G
Sbjct: 275 LHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIG 334
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG+ G S + ++RD+V +I A G+P+
Sbjct: 335 RTGRAGRTGRALSFFHPADRDIVRSIETMA--GKPI 368
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 36/187 (19%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+++LGLS ++RAL + G P+ +Q S+ V+ G+D++ A+TG+GKT +L+P++
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
K+ + R +LVL P L Q+ + A D + L AV
Sbjct: 61 HKIA-----------EGRRHGIRNRALVLSPTRELATQIHQAAK----DYAKYLHTNAVL 105
Query: 203 VCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ GG + W D++V+TP LL+++ RR + V+ DEAD
Sbjct: 106 LVGGVDFIRQERNLKRNW-----DIVVATPGRLLDHV----RRNNLTLANTSLVIIDEAD 156
Query: 252 MLLCGSF 258
+L F
Sbjct: 157 RMLDMGF 163
>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
Length = 455
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 28/235 (11%)
Query: 70 DKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
D + SS T A + T+KSLGL D L+ ALE G+ P+ +Q+ S+ L G+D++ AE
Sbjct: 6 DASTSSATPEAQKH-TFKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAE 64
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT ++ +P+++KL +EP A VL P L Q+ + AL
Sbjct: 65 TGSGKTAAFALPILQKLW------------EEPKGLFA--CVLAPTRELAYQISQQFEAL 110
Query: 190 SADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
A G R + GG P +P V+V+TP LL +++ + + R +K
Sbjct: 111 GAAMG---ARCAVIVGGMDLPTQAIALAKRPHVVVATPGRLLQHLEETKGFSL---RTLK 164
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
++V DEAD LL F + +++ + E+ + + K ++ +SL P
Sbjct: 165 FLVLDEADRLLDMDFGPAIDKILKLIP-KERTTYLFSATMTSKVAKLQRASLVNP 218
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++F TV ++ IL+T G H LS +R L F+ G + V TD A+RG
Sbjct: 262 IIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILVATDVASRG 321
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G +L T+ + +L+ I +
Sbjct: 322 LDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVELLQRIEK 375
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFAL 79
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 80 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 122
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 123 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 179
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 180 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 235
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 236 KLQQYYL 242
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 266 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 326 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 385
Query: 547 PV 548
PV
Sbjct: 386 PV 387
>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 488
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 102/188 (54%), Gaps = 15/188 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L LS++ ++ALE +GF P+ +QA ++ P L G+DV+ AA TG+GKT ++L+P+IE
Sbjct: 16 TFADLNLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIE 75
Query: 145 KLCTALGDSENSNSDKEPTP-PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L ++ + P PRA LVL P L V++A L VR V
Sbjct: 76 RLGGGAPAPKDRPAAAHGKPGPRA--LVLAPTRELA---VQIAGELDRFGRGRHVRGALV 130
Query: 204 CGGQGW-----PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G + +VIV+TP L++++ R + G++ +V DEAD +L F
Sbjct: 131 IGGVGMGAQSAALRDHEVIVATPGRLVDHLQQGTAR----LDGLEVLVLDEADRMLDMGF 186
Query: 259 QNQVIRLI 266
Q+ R++
Sbjct: 187 APQLKRIL 194
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T V K L+ AG + H D S +R L F++ + V V TD AAR
Sbjct: 267 TLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVATDIAAR 326
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GID+ + HV+ D D++HRVGRTAR G ++ + DL+ I R
Sbjct: 327 GIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRDIER 381
>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
Length = 519
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 42/258 (16%)
Query: 72 NGSS--DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
NGS D + +TWK LGL++ L +A + + PS +Q ++ L GKDV+ AE
Sbjct: 51 NGSEPEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAE 110
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT ++ +P++ L EN P R +LVL P L Q+ AL
Sbjct: 111 TGSGKTGAFALPILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEAL 156
Query: 190 SADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G ++ V GG QG + KP +I++TP L+++++ + + + +K
Sbjct: 157 GSGIG---IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIK 210
Query: 244 YVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNS 293
Y+V DEAD +L F+ ++ +++ + F F K++ ++ + ++ P++++ S
Sbjct: 211 YLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKIEVS 270
Query: 294 SLTQPDLQDEENLQDEYI 311
+ Q E LQ Y+
Sbjct: 271 N----KYQTVEQLQQSYL 284
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 308 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRG 367
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L ++ + +L I
Sbjct: 368 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
gi|91208275|sp|Q2UHC1.1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
Length = 929
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ G+DVV A TGSGKT ++++P+IEK
Sbjct: 91 FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIEK 150
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L +++V + G
Sbjct: 151 LKS------------HSTKVGARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVG 195
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 196 GDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 246
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F +Q+ ++ + K L +G+++P + +D S PDL++
Sbjct: 247 EMGFADQLTEILYGLPANRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLEN 306
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L+ AG + L R + NF+ + V TD AAR
Sbjct: 375 TIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAAR 434
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 435 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDAD 480
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|301119351|ref|XP_002907403.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262105915|gb|EEY63967.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 685
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 51/261 (19%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENS------GFGRPSIVQAASVGPVLSGKDVV 125
+ SS+ FA + T++S+ +S++L+ L+ GF RP+ VQ ++ +L G D++
Sbjct: 93 SSSSEKIFAAN--TFESMQMSEKLVNVLKKDTERGGFGFARPTNVQVQTIPSILKGNDIL 150
Query: 126 IAAETGSGKTHSYLVPLIEKL-----CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180
+ +ETGSGKT SYL+P+++KL C D +L+L P LC
Sbjct: 151 VKSETGSGKTLSYLLPIVQKLQAVSPCIQRQDG-------------CMALILAPTRELCT 197
Query: 181 QVVRMANALSADNGEPLVRAV--AVCGGQGWPIGKPD------VIVSTPAALLNNIDPKR 232
Q++ AN L +P V V A+ GG+ K ++V+TP L +++
Sbjct: 198 QILETANRLI----QPFVFLVPGAIIGGEKKKAEKARLRKGIIILVATPGRLADHL--VN 251
Query: 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMN-------ESGVE 285
+ R ++++V DEAD LL F+ Q+ +++ + + R N SGV+
Sbjct: 252 TLSFNYSR-LQFLVLDEADRLLDMGFEKQITQILTILDGKKTSQKRQNILVSATVNSGVQ 310
Query: 286 KPLEMDNSSLTQPDLQDEENL 306
+ +M SL++P L D + L
Sbjct: 311 QLAKM---SLSKPVLIDADAL 328
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 34/198 (17%)
Query: 377 PDADWISGNYLHFHNP-RLKEKWIEVTVDTQVDALIEAVKERLEFGAE---------TSR 426
P +D S F P +L + ++ V T++ AL +++ L +
Sbjct: 334 PASDMKSARQEKFFTPHQLMQHFMLVPAKTRLCALTCFLRKELRHAPRDHKKDGSPGKCK 393
Query: 427 TMVFANTVDAV---YAVTKIL------------KTAGIEC--------YCYHKDLSLEER 463
+VF +T DAV YA+ + +++G+ + H ++ +ER
Sbjct: 394 IVVFLSTCDAVDFHYALFRKCAWPSGKGASEESESSGVASLFGSQGPIFRLHGNIPQQER 453
Query: 464 AKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
T +F G GV +CTD AARG+++P V ++Q D T D++HRVGRTAR+G G
Sbjct: 454 VTTFKSFCSSGSGVLLCTDVAARGLNLPTVKWIVQYDPPTETRDYVHRVGRTARSGNQGS 513
Query: 523 VTSLYTESNRDLVDTIRR 540
S + +D + +
Sbjct: 514 SLLFLMPSESEYLDYLSK 531
>gi|441477763|dbj|BAM75194.1| vasa-like gene-4, partial [Pinctada fucata]
Length = 593
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++RKN +Q + +AT P + ++ A LK + G NP ++++
Sbjct: 358 RQIRKN----RQTLMWSATWPKDIQRLASKFLKDP---VEIHVGTSDLVANPDIEQRVKL 410
Query: 401 VTVDTQVDALIEAVKERLE---FGAETSRTMVFANTVDA-------VYAVTKILKTAGIE 450
V + ++ LI+ +KE + GAE + ++F T +Y T I
Sbjct: 411 VDDNDKIPNLIQDLKEIFDPKNMGAEKPKVLIFTTTKRTADFLSRKMYGATVNSDNLRIT 470
Query: 451 CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C H D ER L +F+ + + + TD A+RG+D+ +++HVI D T D++H
Sbjct: 471 SDCLHGDKDQRERDSILADFRSGRSFILIATDVASRGLDVNDITHVINYDMPTRIEDYIH 530
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLV-DTIRRAAKLGQPV 548
R+GRT RAG+ G+ S E++R+++ D +R GQ V
Sbjct: 531 RIGRTGRAGRKGVSISYVNETDRNMLKDVVRIMEDAGQDV 570
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 37/245 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ + + + L F +P+ +Q+ + SG+DV+ A+TGSGKT ++++P +
Sbjct: 186 TFEEANFPEYIQKTLMQQDFEKPTSIQSVTWPLASSGRDVIGIAQTGSGKTLAFMLPALV 245
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ N N P A LV+ P LC+QV +++ A S + +VAV
Sbjct: 246 HIM-------NQNDRSCRDGPIA--LVMTPTRELCQQVTKVSQAFSR---ACKINSVAVF 293
Query: 205 GG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G P ++V+TP LN++ + V Y+V DEAD +L
Sbjct: 294 GGAKRHSQLADIRAGAP-ILVATPGR-LNDLTSSGELTLN---KVTYLVLDEADRMLDMG 348
Query: 258 FQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSS---LTQPDLQDEE 304
F+ Q+ +++ R + K + R+ ++ P+E+ + + PD++
Sbjct: 349 FEPQIQKIVRQIRKNRQTLMWSATWPKDIQRLASKFLKDPVEIHVGTSDLVANPDIEQRV 408
Query: 305 NLQDE 309
L D+
Sbjct: 409 KLVDD 413
>gi|15236218|ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|332661036|gb|AEE86436.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
Length = 626
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL RLIRAL G +P+++Q +++ +L GKDVV A+TGSGKT +YL+PL++
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL-----SADNGEPLVR 199
KL +A +S S K+ P + +L P+ LC+QV ++L L
Sbjct: 107 KLFSA-----DSVSKKKLAP---SAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTS 158
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+++ + G P+++VSTPA + + +V DEAD+LL ++
Sbjct: 159 SMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYE 218
Query: 260 NQV 262
+ +
Sbjct: 219 DNL 221
>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
gi|225201660|gb|EEG84014.1| DEAD/DEAH box helicase [Proteus penneri ATCC 35198]
Length = 475
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 21/190 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS+ L+RA++ G+ P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++ +P++EK
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+++ K P +A L+L P L Q+ A S +R++ V G
Sbjct: 64 L------SQSATKTKGRQPVKA--LILTPTRELAAQIAENVKAYSR---YIPIRSLVVFG 112
Query: 206 G-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + G DV+++TP LL D + + ++ R V+ +V DEAD +L F
Sbjct: 113 GVSINPQMMKLRGGVDVLIATPGRLL---DLEHQNAVDLSR-VEVLVLDEADRMLDMGFI 168
Query: 260 NQVIRLINMF 269
+ + R+IN
Sbjct: 169 HDIRRVINKL 178
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++F T + + L GI+ H + S R + L +F++ K V TD AA
Sbjct: 248 QVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + +V+ + A D++HR+GRT RA G SL L+ I R K
Sbjct: 308 RGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLK 366
>gi|391865804|gb|EIT75083.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 928
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ G+DVV A TGSGKT ++++P+IEK
Sbjct: 91 FQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIPMIEK 150
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L +++V + G
Sbjct: 151 LKS------------HSTKVGARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVG 195
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 196 GDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 246
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F +Q+ ++ + K L +G+++P + +D S PDL++
Sbjct: 247 EMGFADQLTEILYGLPANRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLEN 306
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L+ AG + L R + NF+ + V TD AAR
Sbjct: 375 TIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAAR 434
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 435 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDAD 480
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|73997169|ref|XP_866840.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Canis lupus familiaris]
Length = 407
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 475
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 24/215 (11%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ +++Q +F +AT+P K AG +LK D +S R+ ++ +
Sbjct: 171 RKIASQLTKNRQNLFFSATMPSEIGKLAGELLK----DPVQVSVAPQATTVERIDQRVL- 225
Query: 401 VTVDTQVDALIEAVKER---LEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCYH 455
IEA ++R E A++S RT+VF T V K L AGIE H
Sbjct: 226 ---------FIEAQRKRPLLAELFADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIH 276
Query: 456 KDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
D + +R + L F K G V TD AARGID+ +VSHVI + ++HR+G
Sbjct: 277 GDKTQGQRERALAAF--KAGEMRALVATDIAARGIDVNDVSHVINYELPNVPEAYVHRIG 334
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
RTAR G+ G+ S + R+L+ I++A + P
Sbjct: 335 RTARKGKDGIAISFCADDERNLLKDIQKATRQTIP 369
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ L++AL G+ P+ +QA ++ VL GKD++ A+TG+GKT ++ +P++++
Sbjct: 4 FADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D++P P R LVL P L Q+ A + G + +
Sbjct: 64 LA----------EDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMG---LSVHTIY 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + G DV+V+TP L++++ K V G + V DEAD +L F
Sbjct: 111 GGVKYGPQMKALAGGIDVLVATPGRLMDHMAEKS----AIVSGTEIFVLDEADQMLDLGF 166
>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
musculus]
Length = 354
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 40/264 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 24 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 83
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 84 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 126
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 127 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 183
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 184 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 239
Query: 305 NLQDEYISDEGNFEGDSDVEGLTE 328
LQ Y+ F+ V L E
Sbjct: 240 KLQQYYLFIPSKFKDTYLVYILNE 263
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 270 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 329
Query: 487 IDIPNVSHVIQADFAT 502
+DIP+V V+ D T
Sbjct: 330 LDIPHVDVVVNFDIPT 345
>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 545
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D R+ K +Q +F +AT+P + A LK +P R++
Sbjct: 167 DIERIFKLTPPRRQTLFFSATMPPEITRLTAAFLK-----------------DPTRIEAS 209
Query: 398 WIEVTVDTQVDALI-----EAVKERLEFGAETSRT-----MVFANTVDAVYAVTKILKTA 447
+T DT ++ + +R A SRT +VF N V V K LKT
Sbjct: 210 RPAMTADTITQYIVRIPTSDPKAKRAALRALMSRTDVRNGIVFCNRKSEVDIVAKSLKTH 269
Query: 448 GIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G + H DL R KTL +F+ + V +D AARG+DIP+VSHV D + A D
Sbjct: 270 GFDAAAIHGDLDQSHRTKTLADFRSGALKILVASDVAARGLDIPDVSHVFNYDVSHHADD 329
Query: 507 FLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
++HR+GRT RAG+ G + T ++ +D + + K+
Sbjct: 330 YVHRIGRTGRAGKLGQAFMIVTPADDKSLDKVLKLIKM 367
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 22/188 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS ++A+ ++G+ + +Q ++ L+G+DV+ A+TG+GKT ++ +PL+E+
Sbjct: 4 FSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVER 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV-- 203
L + + PRA +VL P L +QV + G L + +
Sbjct: 64 LASGRARARM---------PRA--IVLAPTRELADQVAESFAKYA--KGTKLTWVLLIGG 110
Query: 204 --CGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G Q + K DV+++TP LL+ + R +M + GV+ +V DEAD +L F
Sbjct: 111 VSMGDQVAALNKGVDVLIATPGRLLDLFE---RGKM-LLTGVEIMVVDEADRMLDMGFIP 166
Query: 261 QVIRLINM 268
+ R+ +
Sbjct: 167 DIERIFKL 174
>gi|395850554|ref|XP_003797848.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Otolemur
garnettii]
Length = 441
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 21 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 80
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V+ +
Sbjct: 81 ALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQCAVIV 123
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 124 GGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 180
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 181 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 236
Query: 309 EYI 311
Y+
Sbjct: 237 YYL 239
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 263 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 322
Query: 487 IDIPNVSHVIQADFATSA 504
+DIP+V V+ D T +
Sbjct: 323 LDIPHVDVVVNFDIPTHS 340
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 40/265 (15%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+++ ++K LG++D L A + G+ P+ +Q ++ L G+D++ AETGSGKT ++
Sbjct: 22 GEESRSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFA 81
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L TP R +LVL P L Q+ AL + G V
Sbjct: 82 LPILQALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VH 124
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +
Sbjct: 125 TTVIVGGIDAMSQSLALAKKPHVIIATPGRLVDHLENTKGFNL---RALKYLVMDEADRI 181
Query: 254 LCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
L F+ +V +++ + D K++ ++ + ++ P++ SS Q
Sbjct: 182 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTV 237
Query: 304 ENLQDEYISDEGNFEGDSDVEGLTE 328
E LQ YI F+ V L E
Sbjct: 238 EKLQQYYIFIPSKFKDSYLVHILNE 262
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGALNKFKAKARSILLATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 380
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 83 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 125
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 126 AVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 182
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 183 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 238
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 239 KLQQYYL 245
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 388
Query: 547 PV 548
PV
Sbjct: 389 PV 390
>gi|452751054|ref|ZP_21950800.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
gi|451961204|gb|EMD83614.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
Length = 481
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 12/202 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ R++Q + +AT+P KK A D S + K
Sbjct: 178 DVERICGLLGRNRQTLLFSATMPPPIKKLA---------DKFMSSPKQIEVERQSSTNKN 228
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRT-MVFANTVDAVYAVTKILKTAGIECYCYHKD 457
IE +V V + R G+E R+ +VF N V +T +LK AG H D
Sbjct: 229 IEQSV-QHVGPRGKRGALRKILGSEGMRSAIVFCNRKRDVKTLTDVLKDAGFRAGQIHGD 287
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ++R T+ +F+ V V +D AARG+D+ VSHV+ D A D++HR+GRT R
Sbjct: 288 MDQKDRMATMADFKADAINVLVASDVAARGLDVKGVSHVVNYDVPLHAEDYVHRIGRTGR 347
Query: 517 AGQYGLVTSLYTESNRDLVDTI 538
AG G+ +L T+S+ +L++ I
Sbjct: 348 AGATGVAVTLVTDSDTELLENI 369
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 18/196 (9%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L+ A+ +SG+ P+ +Q ++ VL GKDVV A+TG+GKT S+++P+I
Sbjct: 13 LSFHQLGLSDELLGAVADSGYSDPTDIQRQAIPLVLMGKDVVGVAQTGTGKTASFVLPMI 72
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L S PR SL++ P L +QV + ++ + +
Sbjct: 73 DIL---------SQGRSRARMPR--SLIIAPTRELADQVAQNFEKYGKNSKLSMALLIGG 121
Query: 204 C--GGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G Q + K DV+++TP LL+ + R + GV +V DEAD +L F
Sbjct: 122 VSFGDQDKALAKGVDVLIATPGRLLDQFE----RGKILLSGVDILVIDEADRMLDMGFIP 177
Query: 261 QVIRLINMFRFDEKQL 276
V R+ + + + L
Sbjct: 178 DVERICGLLGRNRQTL 193
>gi|426225488|ref|XP_004006898.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Ovis aries]
Length = 408
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 83 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 125
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 126 AVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 182
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 183 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 238
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 239 KLQQYYL 245
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 254 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 313
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 314 GKAITFVTQYDVELFQRI 331
>gi|149713748|ref|XP_001501504.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Equus caballus]
Length = 406
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Query: 547 PV 548
PV
Sbjct: 387 PV 388
>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 16/221 (7%)
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW---RRVRKNYQRSKQYIFVAATLP 361
LQD + +G VE L + + + W +R+ +++Q +F +AT+P
Sbjct: 135 RLQDHVQTGAAKLQG---VEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQTLFFSATMP 191
Query: 362 INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421
K A +LK D +S + R+++K I + + L E +++
Sbjct: 192 AEIAKIAAEMLK----DPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQ----- 242
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
R +VFA T VTK L GI + H D S +R + L F+ + + V T
Sbjct: 243 PGIGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPILVAT 302
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
D A+RGID+ V+HV Q D + ++HR+GRTARAG G
Sbjct: 303 DIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASG 343
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 32/202 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL++ L+RAL G+ P+ +QA ++ VL+G+D++ A+TG+GKT ++ +P++
Sbjct: 4 FAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLHH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L +D++ PR +L+L P L Q+ A G + + +
Sbjct: 64 L-----------ADRKAPAPRGGCRALILSPTRELASQIHDNIRAYGRFLG---LSSAVI 109
Query: 204 CGGQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
GG G +P DV+V+TP L +++ + ++GV+ +V DEAD +L
Sbjct: 110 FGGVG---ARPQVEALRRGVDVLVATPGRLQDHVQTGAAK----LQGVEVLVLDEADQML 162
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F V RL ++ + + L
Sbjct: 163 DRGFWPAVKRLSSVMSKNRQTL 184
>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
gi|74697392|sp|Q8NJM2.1|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
Af293]
gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
A1163]
Length = 869
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 72 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 131
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A LVL P+ L Q +++ L G L ++V + G
Sbjct: 132 LKS------------HSTKVGARGLVLSPSRELALQTLKVVKELG--RGTDL-KSVLLVG 176
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD+I++TP L+ N+D + ++YVVFDEAD L
Sbjct: 177 GDSLEEQFAMIAGNPDIIIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 227
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ + K L +G+++P + +D S PDLQ+
Sbjct: 228 EMGFAAQLTEILHGLPANRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQN 287
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VFA T V + +L AG + L R + NF+ + V TD AAR
Sbjct: 357 TIVFAATKHHVDYLYSLLCEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAAR 416
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 417 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDAD 462
>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
Length = 519
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 129/258 (50%), Gaps = 42/258 (16%)
Query: 72 NGSS--DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
NGS D + +TWK LGL++ L +A + + PS +Q ++ L GKDV+ AE
Sbjct: 51 NGSEPEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAE 110
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT ++ +P++ L EN P R +LVL P L Q+ AL
Sbjct: 111 TGSGKTGAFALPILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEAL 156
Query: 190 SADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G ++ V GG QG + KP +I++TP L+++++ + + + +K
Sbjct: 157 GSGIG---IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNL---KAIK 210
Query: 244 YVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNS 293
Y+V DEAD +L F+ ++ +++ + F F K++ ++ + ++ P++++ S
Sbjct: 211 YLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVS 270
Query: 294 SLTQPDLQDEENLQDEYI 311
+ Q E LQ Y+
Sbjct: 271 N----KYQTVEQLQQSYL 284
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 308 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVASRG 367
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G +L ++ + +L I
Sbjct: 368 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 419
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 237 KLQQYYL 243
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 40/250 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V +
Sbjct: 85 ALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VHCAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYISDEGNFE 318
YI F+
Sbjct: 241 YYIFIPSKFK 250
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Query: 547 PV 548
PV
Sbjct: 387 PV 388
>gi|297798432|ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
gi|297312936|gb|EFH43359.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
Length = 634
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL RLIRAL G +P+++Q +++ +L GKDVV A+TGSGKT +YL+PL++
Sbjct: 49 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 108
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL-----SADNGEPLVR 199
KL +A +S S K+ P + +L P+ LC QV ++L L
Sbjct: 109 KLFSA-----DSGSKKKLAP---SAFILVPSRELCHQVYSEVSSLIELCRVQLKAVQLTS 160
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+++ + G P+++VSTPA + + +V DEAD+LL ++
Sbjct: 161 SMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLAILVLDEADLLLSYGYE 220
Query: 260 NQV 262
+ +
Sbjct: 221 DNL 223
>gi|301610484|ref|XP_002934776.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Xenopus (Silurana) tropicalis]
Length = 399
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++ LG++D L E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 16 EEQKTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L +P R +LVL P L Q+ AL + G V++
Sbjct: 76 PILQTLL--------------ESPQRLYALVLTPTRELAFQISEQFEALGSTIG---VKS 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 119 AVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 176 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVE 231
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 232 KLQQFYV 238
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V VI D T + D++HRVGRTARAG+
Sbjct: 247 KRLGSLNKFKAKSRSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRS 306
Query: 521 GLVTSLYTESNRDLVDTI 538
G + ++ + +L I
Sbjct: 307 GKAITFVSQYDVELFQRI 324
>gi|38566158|gb|AAH62498.1| ddx47-prov protein, partial [Xenopus (Silurana) tropicalis]
Length = 401
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++ LG++D L E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 15 EEQKTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFAL 74
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L +P R +LVL P L Q+ AL + G V++
Sbjct: 75 PILQTLL--------------ESPQRLYALVLTPTRELAFQISEQFEALGSTIG---VKS 117
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 118 AVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 174
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 175 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVE 230
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 231 KLQQFYV 237
>gi|406606644|emb|CCH41966.1| hypothetical protein BN7_1505 [Wickerhamomyces ciferrii]
Length = 528
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+R +++Q + AT P ++ A +K+ P I N R+ + V
Sbjct: 286 MRSTTHKARQTLMFTATWPKEVRELASGFMKE--PVKVSIGNRDELSANKRITQVVEVVE 343
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
++ + L+ +K+ + + ++FA + ++L G + H DLS ++
Sbjct: 344 PFSKENKLLSLLKQYQSGSKKDDKVLIFALYKKEASRIERLLINKGYKVAAIHGDLSQQQ 403
Query: 463 RAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R ++L NF++ + + TD AARG+DIPNV VI F + D++HR+GRT RAG YG
Sbjct: 404 RTQSLDNFKKGHSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGAYG 463
Query: 522 LVTSLYTESNRDLVDTIRRAAK-LGQPV 548
+L+TE + L + K QPV
Sbjct: 464 TAHTLFTEQEKHLSGALINVLKGANQPV 491
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F +P+ +Q+ S +LSGKDV+ AETGSGKT ++ VP ++KL + D +P
Sbjct: 138 FPKPTPIQSVSWPYLLSGKDVIGVAETGSGKTLAFGVPAVDKLIKS--------GDLKP- 188
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDVIV 218
L + P L Q+ L+ G + V + GG Q + K +++
Sbjct: 189 ---VQVLAVSPTRELASQIYDNLKTLTDKVG---LNCVCLYGGVPKEQQRRDLKKAQIVI 242
Query: 219 STPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
+TP L++ ++ + V Y+V DEAD +L F+ +
Sbjct: 243 ATPGRLIDLMNEGSVN----LSNVHYLVLDEADRMLEKGFEEDI 282
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 83 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 125
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 126 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 182
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 183 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 238
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 239 KLQQYYL 245
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 388
Query: 547 PV 548
PV
Sbjct: 389 PV 390
>gi|302772787|ref|XP_002969811.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
gi|300162322|gb|EFJ28935.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
Length = 591
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ + ++ LGL RL+RA+ G +P+++Q ++ +L GKDVV A+TGSGKT +YL+
Sbjct: 10 EEALGFEELGLDPRLLRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKTFAYLL 69
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE----- 195
P+I KL L +EN+ K +LVL P LC+QV +L +G
Sbjct: 70 PMIHKL---LAHTENATGLK--------ALVLVPTRELCQQVFDELESLLNFSGGVLTAV 118
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
L +++ +G +P+++VSTP + + I + +V DEAD+LL
Sbjct: 119 QLTTSMSSAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEADLLLS 178
Query: 256 GSFQNQVIRLI 266
++ + +L+
Sbjct: 179 YGYEEDLQKLV 189
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 37/148 (25%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCTD- 481
+ ++F N +D + + L+ GI+ + +L R L F G+F + TD
Sbjct: 269 KALIFVNAIDTSFKIKLFLEQFGIKSAVLNAELPQNSRLHILKEFNL--GLFDYMIATDD 326
Query: 482 -------------------------------AAARGIDIPNVSHVIQADFATSAVDFLHR 510
RG+D NV V+ D + ++HR
Sbjct: 327 GKSDKLETEDQAGGKLKNRKKLKKRIMDAEFGVVRGVDFKNVYTVVNFDLPRTVTGYIHR 386
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTI 538
+GRT RAG G+ S E + L+ ++
Sbjct: 387 IGRTGRAGNAGVAVSFVCEGDEGLLSSL 414
>gi|291392612|ref|XP_002712706.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
[Oryctolagus cuniculus]
Length = 406
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V +
Sbjct: 85 ALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VHCAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYI 311
YI
Sbjct: 241 YYI 243
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 20 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFAL 79
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 80 PILNALLD--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 122
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 123 AVIVGGIDSMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 179
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 180 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 235
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 236 KLQQYYL 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 266 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 326 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 385
Query: 547 PV 548
PV
Sbjct: 386 PV 387
>gi|443672055|ref|ZP_21137151.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443415418|emb|CCQ15489.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 600
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 106/202 (52%), Gaps = 28/202 (13%)
Query: 73 GSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGS 132
G S + D++T+ LG+ +R+++AL + G+ PS +QAA++ P+++G DVV A+TG+
Sbjct: 25 GESASVPEGDDITFADLGIDERVLKALRDVGYESPSPIQAATIPPLMAGNDVVGLAQTGT 84
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSA 191
GKT ++ VP++ +L + R P +LVL P L QV +
Sbjct: 85 GKTAAFAVPILSRLDVSR---------------RVPQALVLAPTRELALQVAEAFGKYAT 129
Query: 192 DNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
P + + + GGQ + I +IV TP ++++++ + + G++Y+
Sbjct: 130 HI--PGLHILPIYGGQAYGIQLSGLRKGAQIIVGTPGRVIDHLE----KGTLDLSGLEYL 183
Query: 246 VFDEADMLLCGSFQNQVIRLIN 267
V DEAD +L FQ V R+++
Sbjct: 184 VLDEADEMLKMGFQEDVERILS 205
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D R+ + KQ +AT+P +K + KQ D I+ P + +
Sbjct: 197 QEDVERILSDTPEYKQVALFSATMPAAIRK----ISKQYLHDPVEITVKTKTSTAPNITQ 252
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++++V +++AL + E EF A ++F T A + + L+ G +
Sbjct: 253 RYVQVAHQRKLEALTR-IFEVEEFEA----MIMFVRTKQATEELAEKLRARGFSAAAING 307
Query: 457 DLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D+ +R +T+ Q K G + V TD AARG+D+ +SHVI D ++HR+GR
Sbjct: 308 DIVQAQRERTI--GQLKNGQIDILVATDVAARGLDVDRISHVINYDIPHDTESYVHRIGR 365
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
T RAG+ G R L+ I RA + QP+
Sbjct: 366 TGRAGRAGQALLFVAPRERHLLKAIERATR--QPI 398
>gi|335308097|ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa]
Length = 473
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 74 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 133
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 134 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 176
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 177 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 233
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 234 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 289
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 290 KLQQYYL 296
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 320 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 379
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+DIP+V V+ D T + D++HRVGRTARAG
Sbjct: 380 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG 411
>gi|301610486|ref|XP_002934777.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Xenopus (Silurana) tropicalis]
Length = 402
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++ LG++D L E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 16 EEQKTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L +P R +LVL P L Q+ AL + G V++
Sbjct: 76 PILQTLL--------------ESPQRLYALVLTPTRELAFQISEQFEALGSTIG---VKS 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 119 AVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 176 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVE 231
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 232 KLQQFYV 238
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 23 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 82
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 83 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQC 125
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 126 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 182
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 183 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 238
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 239 KLQQYYL 245
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 269 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 388
Query: 547 PV 548
PV
Sbjct: 389 PV 390
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
K R+V + +Q +F +AT+P K G + ++ D P+ E
Sbjct: 168 KPIRQVASRLPKKRQNLFFSATMP----KEIGVLASELLTD-------------PKRVEI 210
Query: 398 WIEVTVDTQVDA---LIEAVKER-----LEFGAETSRTMVFANTVDAVYAVTKILKTAGI 449
E T +V IEA ++R + A RT+VF T + V L+ G+
Sbjct: 211 TPEATTAERVSQQVLFIEAQRKRALLSEMYADAVLERTLVFTRTKRSADRVAAYLQAGGV 270
Query: 450 ECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
E H D + +R + L F+ K V TD AARGID+ NVSHVI + A ++
Sbjct: 271 EAAAIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDNVSHVINYELPNVAEAYV 330
Query: 509 HRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
HR+GRTARAG+ G+ +L + R L+ I R +
Sbjct: 331 HRIGRTARAGKSGVSITLCADDERRLLKDIERVTR 365
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS L+ LE G+ +P+ VQA ++ +L G D++ A+TG+GKT ++ +P+++
Sbjct: 4 FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + K P+P +L+L P L Q+ S G ++ + G
Sbjct: 64 LLS---------NRKMPSPKMVRALILSPTRELASQIAESFKTYSKGMG---LQIATIYG 111
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + +G DV+V TP L+++I+ K + V+ V DEAD +L F
Sbjct: 112 GVKYGPQYKALLGGLDVLVCTPGRLIDHIEQK----TVDLSQVECFVLDEADQMLDLGF 166
>gi|358382238|gb|EHK19911.1| hypothetical protein TRIVIDRAFT_83250 [Trichoderma virens Gv29-8]
Length = 549
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + + +Q + +AT P + A L+ D+I N N R+ +
Sbjct: 303 RKIIEQIRPDRQTLMWSATWPKEVRALAADFLQ------DFIQVNIGSMELAANHRITQI 356
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VT + D +I+ +++ +E + ++ ++F T +T+ L+ G H D
Sbjct: 357 VEVVTEMEKRDRMIKHLEKVME--NKENKILIFVGTKRIADEITRFLRQDGWPALSIHGD 414
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT R
Sbjct: 415 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGR 474
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AGQ+G +L+T N RDLV+ ++ A + P
Sbjct: 475 AGQHGTAITLFTTDNQKQARDLVNVLQEAKQQIDP 509
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 135 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 194
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L V++ +S +R V
Sbjct: 195 HI----------NAQPLLAPGDGPIVLILAPTRELA---VQIQQEISKFGRSSRIRNTCV 241
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 242 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 295
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 296 MGFEPQIRKIIEQIRPDRQTL 316
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 36/231 (15%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A N T+ LG+S L RA + GF +PS +QA ++ L GKD++ A+TGSGKT ++
Sbjct: 34 ASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFS 93
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L EN P P A LVL P L Q+ + +L + G VR
Sbjct: 94 LPILQTLW------EN------PQPFFA--LVLAPTRELAYQISQQVTSLGSGIG---VR 136
Query: 200 AVAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q + K P +IV+TP L+++++ + + + +KY+V DEAD L
Sbjct: 137 TAVLVGGMDMMSQSIALSKRPHIIVATPGRLMDHLENTKGFSL---KSLKYLVMDEADRL 193
Query: 254 L---CGSFQNQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSS 294
L G ++++++I N + F +++++ + + KP+ ++ SS
Sbjct: 194 LDLDFGPIIDKILKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSS 244
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDA 482
+S M+F TV ++ IL+ G H ++ R +L F+ G + V TD
Sbjct: 277 SSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
A+RG+DIP V VI D T++ D++HRVGRTARAG+ G +L T+ + +++ I
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 124/246 (50%), Gaps = 40/246 (16%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ +TWK LGL D L + + + P+ +Q ++ L GKDV+ AETGSGKT ++ +P
Sbjct: 16 EKITWKDLGLVDILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALP 75
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++ L EN P R +L+L P L Q+ +AL + G V+ V
Sbjct: 76 ILQALL------EN--------PQRYFALILTPTRELAFQISEQFDALGSSIG---VKTV 118
Query: 202 AVCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG QG + KP +I++TP L+++++ + + R +K++V DEAD +L
Sbjct: 119 VLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTKGFNL---RQLKFLVMDEADRILN 175
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F+ +V +++ + + K++ ++ + + P++++ S+ Q E
Sbjct: 176 MDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEK 231
Query: 306 LQDEYI 311
LQ YI
Sbjct: 232 LQQYYI 237
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H ++ +R L F+ K + + TD A+RG
Sbjct: 261 MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRG 320
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETG GKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 119/243 (48%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V+ +
Sbjct: 85 ALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQCAVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 128 GGIDSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYI 311
Y+
Sbjct: 241 YYL 243
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
Length = 469
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 36/230 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VTW LGL D L +A E + PS +Q S+ L GKD++ AETGSGKT ++ +P++
Sbjct: 39 VTWSDLGLVDVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPIL 98
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L EN P R +L+L P L Q+ AL + G V+++ +
Sbjct: 99 QALL------EN--------PQRHFALILTPTRELAFQISEQFEALGSGIG---VKSIVI 141
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP +I++TP L++++ + + R +K++V DEAD +L
Sbjct: 142 VGGLDMTSQALMLAKKPHIIIATPGRLVDHLSNTKGFNL---RALKFLVMDEADRILNMD 198
Query: 258 FQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQ 297
F+ +V +++ + F F K+++++ + ++ P+ ++ S+ Q
Sbjct: 199 FEAEVDKILKVIPRERRTFLFSATMTKKVNKLQRACLQDPVRVEVSTKYQ 248
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 282 MVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRG 341
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 342 LDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 393
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 27 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 86
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 87 PILNALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 129
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP ++++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 130 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 186
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 187 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 242
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 243 KLQQYYL 249
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 273 MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLNKFKAKARSILLATDVASRG 332
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 333 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 384
>gi|340520139|gb|EGR50376.1| predicted protein [Trichoderma reesei QM6a]
Length = 547
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + + +Q + +AT P + A L+ D+I N N R+ +
Sbjct: 297 RKIIEQIRPDRQTLMWSATWPKEVRALASDFLQ------DFIQVNIGSMELAANHRITQI 350
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VT + D +I+ +++ +E + ++ ++F T +T+ L+ G H D
Sbjct: 351 VEVVTEMEKRDRMIKHLEKVME--NKENKILIFVGTKRIADEITRFLRQDGWPALSIHGD 408
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT R
Sbjct: 409 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGR 468
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AGQ+G +L+T N RDLV+ ++ A + P
Sbjct: 469 AGQHGTAITLFTTDNQKQARDLVNVLQEAKQQIDP 503
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 129 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 188
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L V++ +S +R V
Sbjct: 189 HI----------NAQPLLAPGDGPIVLILAPTRELA---VQIQQEISKFGRSSRIRNTCV 235
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 236 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 289
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 290 MGFEPQIRKIIEQIRPDRQTL 310
>gi|221502971|gb|EEE28681.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii VEG]
Length = 959
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
W L LS L+RA+++ + P+ +QAA + P L G+D++ A+TGSGKT ++L+P
Sbjct: 220 QTAWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPT 279
Query: 143 IEKLCTALGDSENSNSDKEPTP--PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+E+L + G + PT +LVL P L Q V+M LS P+ A
Sbjct: 280 LERLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT--PITHA 337
Query: 201 VAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+A CGG +PD++V+TP +L+ + +E ++ +V DEAD LL
Sbjct: 338 LA-CGGMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLEL---LEIIVLDEADRLL 393
Query: 255 CGSFQNQVIRLI 266
F+ +++ ++
Sbjct: 394 ELGFREEILAIL 405
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFV-CT 480
A T +VF T + + + K G++ H +L+ + R + L F F+ +
Sbjct: 500 AYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLAS 559
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ A+RG+DI V VI + ++H VGRTAR G+ G+ ++Y
Sbjct: 560 ELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIY 606
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++ LG++D L E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 16 EEQKTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L +P R +LVL P L Q+ AL + G V++
Sbjct: 76 PILQTLL--------------ESPQRLYALVLTPTRELAFQISEQFEALGSTIG---VKS 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 119 AVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 176 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVE 231
Query: 305 NLQDEYI 311
LQ Y+
Sbjct: 232 KLQQFYV 238
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + V +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 262 MIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVASRG 321
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + ++ + +L I
Sbjct: 322 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRI 373
>gi|221485654|gb|EEE23935.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii GT1]
Length = 962
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
W L LS L+RA+++ + P+ +QAA + P L G+D++ A+TGSGKT ++L+P
Sbjct: 223 QTAWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPT 282
Query: 143 IEKLCTALGDSENSNSDKEPTP--PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+E+L + G + PT +LVL P L Q V+M LS P+ A
Sbjct: 283 LERLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT--PITHA 340
Query: 201 VAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+A CGG +PD++V+TP +L+ + +E ++ +V DEAD LL
Sbjct: 341 LA-CGGMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLEL---LEIIVLDEADRLL 396
Query: 255 CGSFQNQVIRLI 266
F+ +++ ++
Sbjct: 397 ELGFREEILAIL 408
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFV-CT 480
A T +VF T + + + K G++ H +L+ + R + L F F+ +
Sbjct: 503 AYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLAS 562
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ A+RG+DI V VI + ++H VGRTAR G+ G+ ++Y
Sbjct: 563 ELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIY 609
>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
Length = 518
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 126/248 (50%), Gaps = 40/248 (16%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+ +TWK LGLS+ L +A + + PS +Q ++ L GKDV+ AETGSGKT ++
Sbjct: 53 AEQPLTWKDLGLSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFA 112
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P++ L EN P R +LVL P L Q+ AL + G ++
Sbjct: 113 LPILHALL------EN--------PQRYFALVLTPTRELAFQIGEQFEALGSGIG---IK 155
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +
Sbjct: 156 CCVIVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNL---KAIKYLVMDEADRI 212
Query: 254 LCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
L F+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q
Sbjct: 213 LNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTV 268
Query: 304 ENLQDEYI 311
+ LQ Y+
Sbjct: 269 DQLQQYYL 276
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 300 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 359
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V V+ D T + D++HRVGRTARAG+ G ++ ++ + +L I +
Sbjct: 360 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQ 413
>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 455
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 340 WRRVRKNYQRSKQYIFVAATLP-----INGKKTAGAVLKQMFPDADWISGNYLHFHNPRL 394
R++ + +Q +F +AT+P + GK V + P++ R+
Sbjct: 170 LRKISELVPDDRQTLFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAE---------RI 220
Query: 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
+ V D + L + ER + + R ++FA T + K L +GI
Sbjct: 221 DQYLFMVQQDEKQTLLEMILSERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAI 280
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H + S +R + L F+ K + V TD AARGIDIP VSHV+ + ++HR+GR
Sbjct: 281 HGNKSQPQRERALDEFKRAKTPILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGR 340
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRR 540
TARAG+ G+ + E RD + IR+
Sbjct: 341 TARAGRDGVAIAFCAEDERDYLKDIRK 367
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 102/196 (52%), Gaps = 23/196 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS +++AL+ G+ P+ +QA ++ PVL G+D++ A+TG+GKT ++++P I++
Sbjct: 4 FTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPSIDR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++DK+ L+L P L Q+ A A G ++ ++ G
Sbjct: 64 L---------RDADKQSPFKSCRMLILAPTRELAGQIADSAKDYGALAG---LKVHSIVG 111
Query: 206 GQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G + D++V+TP LL+ ID ++ + V+ ++ DEAD +L F
Sbjct: 112 GTSVNKDRNKLHRGTDILVATPGRLLDLID----QKAFTLDKVEILILDEADQMLDLGFI 167
Query: 260 NQVIRLINMFRFDEKQ 275
+ +R I+ D++Q
Sbjct: 168 H-ALRKISELVPDDRQ 182
>gi|255718829|ref|XP_002555695.1| KLTH0G15224p [Lachancea thermotolerans]
gi|238937079|emb|CAR25258.1| KLTH0G15224p [Lachancea thermotolerans CBS 6340]
Length = 596
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 110/193 (56%), Gaps = 14/193 (7%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHS 137
+ DD+VT++S L RL+++++ +G+ RP+++Q++++ L +DV+ A TGSGKT +
Sbjct: 10 YIDDSVTFESFQLDPRLLQSIKYNGYDRPTLIQSSAIPLALEQRRDVIAKAATGSGKTLA 69
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL----SAD- 192
YL+P+I+ + +N++ +E P+ ++L P L +QV + + L S D
Sbjct: 70 YLIPVIQTILNYKQSEQNNSQTQE---PKTLGIILVPTRELAQQVQSVLSKLVLYCSKDV 126
Query: 193 NGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
+ L ++ + +P+V++STP+ LLN ++ K + +K++V DE D+
Sbjct: 127 HSLNLSSQLSESVLTSLLLDRPEVLISTPSKLLNVLETKSSALS--LEDLKFLVIDEVDL 184
Query: 253 LLCGSFQ---NQV 262
+L +Q NQ+
Sbjct: 185 VLTFGYQEDLNQI 197
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RG+D NV+ V+ D T+A ++HR+GRTARAG+ G+ S
Sbjct: 383 GVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKSGVAISF 427
>gi|66826187|ref|XP_646448.1| hypothetical protein DDB_G0269986 [Dictyostelium discoideum AX4]
gi|60474406|gb|EAL72343.1| hypothetical protein DDB_G0269986 [Dictyostelium discoideum AX4]
Length = 796
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCTD 481
+ +T++F N D+ + L GI H ++ R++ +F F V TD
Sbjct: 645 QKRKTLIFCNKPDSCRSTEYFLTENGINATSLHGEMPPHRRSENWKSFLNGDKEFLVATD 704
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
A+RGIDI + HVI DF ++ +D+LHR+GRTARAG GLVT L T +R L D I+ +
Sbjct: 705 IASRGIDIGLIDHVILFDFPSNPIDYLHRIGRTARAGNRGLVTCLITHKDRYLADEIKES 764
Query: 542 AKLG 545
+ G
Sbjct: 765 IRKG 768
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 84 VTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVP 141
+ + LG+ L+ +L+ PS++Q ++ P+LS KDV+ ++TG+GKT +YL+P
Sbjct: 225 IAFSRLGIKKNLVESLKKHFNITIPSLIQQLAIPPILSNSKDVLFVSQTGTGKTLTYLLP 284
Query: 142 LIEKL 146
+I+ +
Sbjct: 285 IIQNI 289
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 26/135 (19%)
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG-----------WPIG 212
P R +++L P L QV+++A +S E A+ G G PI
Sbjct: 370 PRRPKAIILVPTRELAIQVMKVAKKISF---EVKFSCTAISSGGGDLNKYLKTFKNLPI- 425
Query: 213 KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGS-FQNQVIRLINMFR 270
D+++STP +L+ I+ K+ F ++++V DEAD M G F+ + +++ F+
Sbjct: 426 --DILISTPGSLIKLIEQKKI----FFSKLRHLVIDEADSMFTIGKGFEQDIDKIVQPFK 479
Query: 271 FDEKQLSRMNESGVE 285
+ +L E G E
Sbjct: 480 Y---RLQNKQEIGSE 491
>gi|254454125|ref|ZP_05067562.1| ATP-dependent RNA helicase RhlE [Octadecabacter arcticus 238]
gi|198268531|gb|EDY92801.1| ATP-dependent RNA helicase RhlE [Octadecabacter arcticus 238]
Length = 501
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VC 479
GA+ ++F N V AV K + AG++ H DL R +TL F++ F V
Sbjct: 208 GADCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTLRFLVA 267
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+D AARG+DIPNVSHV D + A D++HR+GRT RAG+ G + T ++ D I
Sbjct: 268 SDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGTTIMICTPRDQKNFDDIE 327
Query: 540 RAAKLGQP 547
R ++ P
Sbjct: 328 RLVEMAIP 335
>gi|357417152|ref|YP_004930172.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
gi|355334730|gb|AER56131.1| ATP-dependent RNA helicase DbpA [Pseudoxanthomonas spadix BD-a59]
Length = 458
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +L LSD L R L+ +G+ RP+ +QA ++ P+L G+DV+ A TGSGKT ++ + L+ +
Sbjct: 4 FSTLPLSDALRRGLDAAGYTRPTDIQARALPPILEGRDVIAQAPTGSGKTAAFALGLLTR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ T L ++ +LVLCP L +QV R L+ G P ++ +CG
Sbjct: 64 MDTGLVKTQ--------------ALVLCPTRELADQVARAVRRLAV--GLPNLKVSLLCG 107
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P V+V TP I R++ + GV+ +V DEAD +L F+
Sbjct: 108 GMALEPQLASLEHDPHVVVGTP----GRIQELLRKKALHLNGVRVLVLDEADRMLDMGFE 163
Query: 260 NQVIRLIN 267
Q+ ++
Sbjct: 164 EQIREILG 171
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 16/196 (8%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++ R + R++Q + +AT P + A LK+ ++ + P + +
Sbjct: 163 EEQIREILGRTPRTRQSLLFSATWPEAIRAIAQDSLKEPV----EVATDLATADTPDILQ 218
Query: 397 KWIEVTVDTQVDALIEAV-KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
++ EV + AL + ++R+E +VF NT V V L+ G H
Sbjct: 219 RFCEVEPALRQKALAGLLLQQRVE------PAVVFCNTRKDVDEVANSLQGYGFSALALH 272
Query: 456 KDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
D+ +R + LV F GG V V +D AARG+D+ ++ V + T + HR+G
Sbjct: 273 GDMEQRDREEVLVRF--SGGSCNVLVASDVAARGLDVEELAAVFNYELPTDTDTYTHRIG 330
Query: 513 RTARAGQYGLVTSLYT 528
RTARAG+ GL SL T
Sbjct: 331 RTARAGRSGLAFSLVT 346
>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 530
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VC 479
GA ++F N V AV K + AG++ H DL R +TL F++ F V
Sbjct: 249 GANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTLRFLVA 308
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+D AARG+DIPNVSHV D + A D++HR+GRT RAG+ G + T ++ +D I
Sbjct: 309 SDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQKNLDDIE 368
Query: 540 RAAKLGQP 547
R ++ P
Sbjct: 369 RLVEMAVP 376
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + L L ++++A+E +G+ P+ +QA ++ P L G+DV+ A+TG+GKT + +P+I
Sbjct: 2 IKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMI 61
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L + PR SLVL P L QV N + L +A+ +
Sbjct: 62 TMLKRGRARARM---------PR--SLVLAPTRELAAQVAE--NFDTYAKYTKLTKALLI 108
Query: 204 CG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G Q I + DV+++TP LL++ + R + VK +V DEAD +L F
Sbjct: 109 GGVSFKEQDNLIDRGVDVLIATPGRLLDHFE----RGKLILSDVKIMVVDEADRMLDMGF 164
Query: 259 QNQVIRLINMFRFDEKQL 276
+ R+ + F + L
Sbjct: 165 IPDIERIFGLTPFTRQTL 182
>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
Length = 410
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAE-TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+EV + + +A ++ + E + E +S+ ++F T V ++T+ ++ G C H D
Sbjct: 213 VEVCEEYEKEAKLKTLLENIHDANEDSSKIIIFVETKKKVESITRSIRRFGWPAVCIHGD 272
Query: 458 LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER L F+ +K + V TD AARG+D+ +V +VI D+ +S+ D++HR+GRT R
Sbjct: 273 KSQHERDFVLREFRNKKSSILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGR 332
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+G G +L+T N RDL++ ++ A + P
Sbjct: 333 SGNTGTSYALFTPQNARQARDLINVLKEAKQEVNP 367
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
GF P+ +QA +SG ++V +TGSGKT Y++P I + E N P
Sbjct: 9 GFQEPTAIQAQGWPIAMSGYNMVGIGQTGSGKTLGYILPAI----VHINAQERLNHGDGP 64
Query: 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGGQGWPIGKP------- 214
+L+L P L +Q+ +++ D G VR+ + GG P G
Sbjct: 65 I-----ALILAPTRELAQQI----QSVTTDFGSLSYVRSTCIFGGA--PRGGQARDLRRG 113
Query: 215 -DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDE 273
++ ++TP L++ ++ +R Y+V DEAD +L F+ Q+ ++I R D
Sbjct: 114 VEICIATPGRLIDFLEQGTTN----LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 169
Query: 274 KQL 276
+ L
Sbjct: 170 QVL 172
>gi|237842773|ref|XP_002370684.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968348|gb|EEB03544.1| DEAD/DEAH box RNA helicase, putative [Toxoplasma gondii ME49]
Length = 962
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
W L LS L+RA+++ + P+ +QAA + P L G+D++ A+TGSGKT ++L+P
Sbjct: 223 QTAWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPT 282
Query: 143 IEKLCTALGDSENSNSDKEPTP--PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+E+L + G + PT +LVL P L Q V+M LS P+ A
Sbjct: 283 LERLLHSPGVRSRKMTANGPTGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT--PITHA 340
Query: 201 VAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+A CGG +PD++V+TP +L+ + +E ++ +V DEAD LL
Sbjct: 341 LA-CGGMTLKAHESALRHQPDIVVATPGRILDLLLNSPTVHLEL---LEIIVLDEADRLL 396
Query: 255 CGSFQNQVIRLI 266
F+ +++ ++
Sbjct: 397 ELGFREEILAIL 408
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFV-CT 480
A T +VF T + + + K G++ H +L+ + R + L F F+ +
Sbjct: 503 AYTKNVIVFFQTKKLAHQTSLLFKFMGLKYAELHGNLTQQMRVEALERFHAGEADFLLAS 562
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ A+RG+DI V VI + ++H VGRTAR G+ G+ ++Y
Sbjct: 563 ELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTIY 609
>gi|148232160|ref|NP_001084651.1| uncharacterized protein LOC414610 [Xenopus laevis]
gi|46249606|gb|AAH68844.1| MGC81500 protein [Xenopus laevis]
Length = 317
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 128/264 (48%), Gaps = 40/264 (15%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T++ LG++D L A E G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 16 EEQKTFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFAL 75
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L +P R +LVL P L Q+ A+ + G V++
Sbjct: 76 PILQTLLE--------------SPQRLYALVLTPTRELAFQISEQFEAIGSSIG---VKS 118
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 119 AVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 175
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 176 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLERAALKDPVKCAVSS----KYQTVE 231
Query: 305 NLQDEYISDEGNFEGDSDVEGLTE 328
LQ Y+ F+ V L E
Sbjct: 232 KLQQFYVFIPSKFKDSYLVYILNE 255
>gi|95132450|gb|AAI16543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio]
gi|182891866|gb|AAI65407.1| Ddx56 protein [Danio rerio]
Length = 557
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D+V + +GL DRL++AL + G+ +P+++Q ++ VL GKD++ A TGSGKT +Y V
Sbjct: 3 EDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLVLEGKDLLARARTGSGKTAAYAV 62
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
PLI+++ T+ K+ +A ++VL P L +QV M L+ VR
Sbjct: 63 PLIQRVLTS----------KQTVREQAVRAVVLVPTKELGQQVQTMIRQLTVYCSRD-VR 111
Query: 200 AVAVCGGQGW----PI--GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ G PI KPD++VSTP+ + +I+ + ++ ++ +V DEAD+L
Sbjct: 112 VADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQ---NLQLHSSLEMLVIDEADLL 168
Query: 254 LCGSFQNQVIRLI 266
F+ + L+
Sbjct: 169 FSFGFEADLKNLL 181
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF 477
L+ G +T++F + VD Y + L+ I + +L + R + F + +
Sbjct: 248 LKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNY 307
Query: 478 VCTD----------------------------------AAARGIDIPNVSHVIQADFATS 503
+ +RGID NVS+VI DF TS
Sbjct: 308 IIASDEQGLESPAGSSQKTQEKGNKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTS 367
Query: 504 AVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
++HRVGRTARA G S + + ++ + A
Sbjct: 368 VESYIHRVGRTARADNPGTALSFISHAELSMLSEVENA 405
>gi|366993102|ref|XP_003676316.1| hypothetical protein NCAS_0D03740 [Naumovozyma castellii CBS 4309]
gi|342302182|emb|CCC69955.1| hypothetical protein NCAS_0D03740 [Naumovozyma castellii CBS 4309]
Length = 519
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGNYLHFHNPRLKEKW 398
+R+ + +Q + AT P ++ A + + K + D +S N R+ +
Sbjct: 279 IRETATKDRQTLMFTATWPKEVRELASSFMNKPVKVSIGNRDELSAN------KRITQ-I 331
Query: 399 IEVTVDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+EV + D L+E +K+ + ++ + ++FA V + L+ G + H D
Sbjct: 332 VEVIEPQRKDRKLLELLKK---YHSKKEKVLIFALYKKEAARVERTLRYNGYDVAAIHGD 388
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
LS E+R K L F+ K + + TD AARG+DIPNV VI F + D++HR+GRT R
Sbjct: 389 LSQEQRTKALGEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 448
Query: 517 AGQYGLVTSLYTESNRDL 534
AGQ G +L+TE + L
Sbjct: 449 AGQTGTAHTLFTEQEKHL 466
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E + F +P+ +QA S +LSGKDV+ AETGSGKT ++ VP I L G S+
Sbjct: 126 EIAKFPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINYLVLNNGKSKG---- 181
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G + V GG Q + +
Sbjct: 182 -------VQVLVISPTRELASQIYDNLIVLTDKVG---LECCCVYGGVPKDAQRAQLRRS 231
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL+ I + VKY+V DEAD +L F+ + +I ++
Sbjct: 232 QVVVATPGRLLDLIQEGSVD----LSAVKYLVLDEADRMLEKGFEEDIKNIIRETATKDR 287
Query: 275 QLSRMNESGVEKPLEMDNSSLTQP 298
Q + ++ E+ +S + +P
Sbjct: 288 QTLMFTATWPKEVRELASSFMNKP 311
>gi|440804129|gb|ELR25007.1| DEAD/DEAH box helicase domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 597
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 27/204 (13%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWI------SGNYLHFHNPRLKEKWIEVTVD 404
+Q + +AT P+ ++ A L DWI G+ F + +K + V
Sbjct: 342 RQTLLFSATFPVEIQRLASDFLN------DWIFLRVGRVGSTTDF----ISQKLMYVEDR 391
Query: 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERA 464
+ +A++E + E T++F T + L G H D + ER
Sbjct: 392 DKTNAVLELLAEVRGL------TLIFVQTKRGADQLENFLYREGFPVASIHGDRTQRERE 445
Query: 465 KTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV 523
L +F+ + + V TD AARG+DIPNV HVI D T+ D++HR+GRT RAG GL
Sbjct: 446 AALTSFRSGRTPILVATDVAARGLDIPNVLHVINYDLPTNIDDYVHRIGRTGRAGNTGLT 505
Query: 524 TSLYTESNR----DLVDTIRRAAK 543
T+ +E + DL+D +R A +
Sbjct: 506 TAFVSERDANILPDLLDILREAEQ 529
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 29/201 (14%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL-------- 146
++R +E SG+ +P+ VQ ++ V G+D++ A+TGSGKT ++L+P+I L
Sbjct: 152 VMRNIELSGYDKPTPVQKYAIPIVGQGRDLMACAQTGSGKTAAFLLPIISALHKNPPASG 211
Query: 147 ---CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
GD S + P A LVL P L Q+ + A S PL RA V
Sbjct: 212 YGRGGFGGDRGGGYSRRPMAQPHA--LVLAPTRELASQIYKEACKFSYYG--PL-RAAVV 266
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q I + +++V+TP L +D R R+ ++Y++ DEAD +L
Sbjct: 267 YGGADIYQQLREIERGVEILVATPGRL---VDLMERARVSLA-NIRYLILDEADRMLDMG 322
Query: 258 FQNQVIRLI---NMFRFDEKQ 275
F+ Q+ R++ +M R +++Q
Sbjct: 323 FEPQIRRIVEQEDMPRTEDRQ 343
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 103/185 (55%), Gaps = 26/185 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K L LS ++A+E G+ +PS +QA ++ VL+GKD++ A+TG+GKT ++++P++
Sbjct: 4 ITFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPIL 63
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EK+ D +N N +LVLCP L QV + S +N + V +++
Sbjct: 64 EKI-----DPKNKN---------VQALVLCPTRELAVQVHEESKKFSRNNRD--VHILSI 107
Query: 204 CGGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GGQ + P + ++V TP +++++ RR + +K +V DEAD +L
Sbjct: 108 YGGQSYDPQIRALKKGVQIVVGTPGRVMDHM----RRGTLKLENLKMLVLDEADEMLNMG 163
Query: 258 FQNQV 262
F++ +
Sbjct: 164 FKDDI 168
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLP---INGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393
K D + + S+Q + +AT+ +N KT Q P+ + L N +
Sbjct: 165 KDDIEEILEKTPESRQTVMFSATMAREIMNIAKTY-----QKNPEVVKVVSEELS--NKK 217
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ + ++EV +V A+I + + TS ++VF NT V + L+ G
Sbjct: 218 IDQYYVEVKRQDRVQAMIRCI----DMMGLTS-SIVFTNTKREVDELVSKLQEEGYVTEG 272
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DL +R + + +F+ K + V TD AARGID+ NV V D + +++HR+G
Sbjct: 273 LHGDLKQAQRDRVMNSFRRKNVNILVATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIG 332
Query: 513 RTARAGQYGL 522
RT RAG GL
Sbjct: 333 RTGRAGMTGL 342
>gi|444320655|ref|XP_004180984.1| hypothetical protein TBLA_0E04100 [Tetrapisispora blattae CBS 6284]
gi|387514027|emb|CCH61465.1| hypothetical protein TBLA_0E04100 [Tetrapisispora blattae CBS 6284]
Length = 866
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
S+Q + +AT P N + AG L D ++S + + + V + + +
Sbjct: 560 SRQTLMFSATFPSNIQNLAGDFLN----DYIFLSVGKIGSTTDNIIQHIYYVRQEEKDNT 615
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ + + + +T++F T + A+T +L G + H D + ER + L
Sbjct: 616 LLDLLDSK---NYKKKQTLIFVETKRSADALTDLLIIEGYKATAIHGDRTQLERERALTA 672
Query: 470 FQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K V V T AARG+DIPNV+HV+ D + D++HR+GRT R G G+ TS +
Sbjct: 673 FKTKRANVLVATSVAARGLDIPNVAHVLNYDLPNNIDDYVHRIGRTGRVGNIGMATSFFN 732
Query: 529 ESN 531
E+N
Sbjct: 733 ENN 735
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 27/198 (13%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ + F +P+ +Q S+ V G+D++ A+TGSGKT ++L P++ K +L
Sbjct: 364 LDNLLVENIKLARFNKPTPIQKYSIPIVNQGRDLMACAQTGSGKTDAFLFPILSK-AFSL 422
Query: 151 GDS-------------ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
G S N S + L+L P L Q+ A S
Sbjct: 423 GPSINNNNDNDNDANQYNKISKYRAKNIKPIILILAPTRELANQIFEEARKFSY---RSW 479
Query: 198 VRAVAVCGGQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+R V GG + ++V+TP L D R ++ + +KY++ DEAD
Sbjct: 480 IRPCVVYGGTNIFTQMKNLENGSQLLVATPGRL---NDLMERGKIS-LSNIKYLILDEAD 535
Query: 252 MLLCGSFQNQVIRLINMF 269
+L F+ Q+ +++ +
Sbjct: 536 RMLDMGFELQIRQIVEHY 553
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 109/194 (56%), Gaps = 12/194 (6%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138
+ ++++ LGLS+ +IRA+ G+ +P+ +Q ++ VLSG+D++ A+TG+GKT S+
Sbjct: 36 YLRSSMSFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASF 95
Query: 139 LVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV---VRMANALSADNGE 195
+PL++KL + + ++ E P RA L+L P L QV VR + N
Sbjct: 96 TLPLLQKLSS---EKSLKSTSYECFPIRA--LILTPTRELAAQVELNVREYSKYLKLNTM 150
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ V++ + G+ D++V+TP LL+++ ++R + V+++V DEAD +L
Sbjct: 151 AMFGGVSINPQKKLLRGRVDILVATPGRLLDHV----QQRTVNLSNVEFLVLDEADRMLD 206
Query: 256 GSFQNQVIRLINMF 269
F + R++++
Sbjct: 207 MGFIRDIRRILSLL 220
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 10/202 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D RR+ + +Q + AT K+ A +L + + I + + +K
Sbjct: 211 RDIRRILSLLPKQRQNLLFFATFSDKIKELATGLLD----NPEMIEVARRNVTADTVTQK 266
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+V D + L++ +++ + + +VF T + K L I+ H +
Sbjct: 267 VYKVDRDRKCQLLVQLIRQNNWY-----QVLVFTRTKYGADRLVKQLTQERIQALAIHGN 321
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R L F+ V V TD AARG+DI + HV+ D D++HR+GRT R
Sbjct: 322 KSQSARTHALAKFKNDSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGR 381
Query: 517 AGQYGLVTSLYTESNRDLVDTI 538
AG G SL DL+ I
Sbjct: 382 AGASGKAVSLVCADEYDLLADI 403
>gi|384251995|gb|EIE25472.1| DEAD-box RNA helicase [Coccomyxa subellipsoidea C-169]
Length = 461
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 20/212 (9%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP----DADWISGNYLHFHNPRLKE 396
R + + +Q + +AT P + + A A L+ + D + + + H L E
Sbjct: 212 RNIVSQIRPDRQTLLWSATWPKDVQSIASAFLRDFYQVTIGSRDLKANHLIDQHFQFLSE 271
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
D A+ LE + SR ++F T AVT+ L+T G H
Sbjct: 272 -----------DDKYRALSRLLEREMDGSRLLIFCETKRGCDAVTRQLRTEGWPALSIHG 320
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D S +ER L F+ K + + TD AARG+D+ ++ V+ D +A D++HR+GRTA
Sbjct: 321 DKSQQERDWVLAEFKAGKSPIMLATDVAARGLDVKDIKMVVNYDMPNTAEDYVHRIGRTA 380
Query: 516 RAGQYGLVTSLYTESN----RDLVDTIRRAAK 543
RAG GL S +T +N R +VD + A +
Sbjct: 381 RAGASGLAVSFFTSANGRMARQIVDILSEAHQ 412
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ + ++ ++++GF +P+ +QA L G+D+V AETGSGKT +YL+P I
Sbjct: 44 TFEEASFPEYVLTEVKHAGFTQPTPIQAQGWPMALLGRDLVGLAETGSGKTLAYLLPAIV 103
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L Q+ + + R
Sbjct: 104 HI----------NAQPYLEPGDGPIVLVLAPTRELAVQIQQECAKFGTSS-----RIKNT 148
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
C G P G +++++TP L++ ++ R+ +R V Y+V DEAD +L
Sbjct: 149 CVYGGAPKGPQMRDLRNGVEIVIATPGRLIDMLE----SRVTNLRRVTYLVLDEADRMLD 204
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ +++ R D + L
Sbjct: 205 MGFEPQIRNIVSQIRPDRQTL 225
>gi|115397285|ref|XP_001214234.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
gi|121738336|sp|Q0CMM8.1|DBP10_ASPTN RecName: Full=ATP-dependent RNA helicase dbp10
gi|114192425|gb|EAU34125.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
Length = 928
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 91 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEK 150
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A L+L P+ L Q +++ L +++V + G
Sbjct: 151 L--------KSHSSKFG----ARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVG 195
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 196 GDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 246
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ K L +G+++P + +D S PDLQ+
Sbjct: 247 EMGFAAQLTEILHGLPTTRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQN 306
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L+ AG + L R + NF+ + V TD AAR
Sbjct: 377 TIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAAR 436
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 437 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDAD 482
>gi|302806830|ref|XP_002985146.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
gi|300146974|gb|EFJ13640.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
Length = 578
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ + ++ LGL RL+RA+ G +P+++Q ++ +L GKDVV A+TGSGKT +YL+
Sbjct: 10 EEALGFEELGLDPRLLRAIAKRGLPKPTLIQQTAIPRILEGKDVVGRAKTGSGKTFAYLL 69
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE----- 195
P+I KL L +EN+ K +LVL P LC+QV +L +G
Sbjct: 70 PMIHKL---LAHTENATGLK--------ALVLVPTRELCQQVFDELESLLNFSGGVLTAV 118
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
L +++ +G +P+++VSTP + + I + +V DEAD+LL
Sbjct: 119 QLTTSMSSAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEADLLLS 178
Query: 256 GSFQNQVIRLI 266
++ + +L+
Sbjct: 179 YGYEEDLQKLV 189
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 37/148 (25%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCTD- 481
+ ++F N +D + + L+ GI+ + +L R L F G+F + TD
Sbjct: 269 KALIFVNAIDTSFKIKLFLEQFGIKSAVLNAELPQNSRLHILKEFNL--GLFDYMIATDD 326
Query: 482 -------------------------------AAARGIDIPNVSHVIQADFATSAVDFLHR 510
RG+D NV V+ D + ++HR
Sbjct: 327 GKSDKLETEDQAGGKLKNRKKLKKRIMDAEFGVVRGVDFKNVYTVVNFDLPRTVTGYIHR 386
Query: 511 VGRTARAGQYGLVTSLYTESNRDLVDTI 538
+GRT RAG G+ S E + L+ ++
Sbjct: 387 IGRTGRAGNAGVAVSFVCEGDEGLLSSL 414
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 23/194 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A D +T+ L + R+ A+ + G+ PS +QAA++ P+++G+DVV A+TG+GKT ++
Sbjct: 13 APDGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFA 72
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+P++ +L A GD PR P +LVL P L QV SA P V
Sbjct: 73 IPILSRLEGA-GDGSG---------PRKPQALVLAPTRELALQVAEAFGRYSAHM--PEV 120
Query: 199 RAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R + + GGQ + + VIV TP +++++D R + ++++V DEAD
Sbjct: 121 RVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLD----RGTLDISELRFLVLDEADE 176
Query: 253 LLCGSFQNQVIRLI 266
+L F V R++
Sbjct: 177 MLTMGFAEDVERIL 190
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 12/208 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ KQ +AT+P ++ A ++ D I+ + ++
Sbjct: 184 EDVERILAETPDDKQVALFSATMPSAIRRLA----QRYLNDPQEITVKSKTATAQNITQR 239
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+++V+ ++DAL ++ ET M VF T A + + L++ G +
Sbjct: 240 YLQVSHQRKLDALTRFLE------VETFDAMIVFVRTKQATEELAEKLRSRGFSAVAING 293
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ +R +T+ + G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 294 DMAQAQRERTINQLKSGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 353
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ G + R L+ +I RA +
Sbjct: 354 RAGRAGNALLFVSPRERHLLRSIERATR 381
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 351 KQYIFVAATLP-----INGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
+Q +F +AT+P + GK V + P A R+ + V D
Sbjct: 183 RQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAE---------RIDQYLFMVQQDE 233
Query: 406 QVDALIEAV-KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERA 464
+ ALIE + K R + R +VF T V K L+ AGIE H + S +R
Sbjct: 234 K-QALIEMILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQ 292
Query: 465 KTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV 523
+ L F+ K + + TD AARGIDIP VSHVI + ++HR+GRTARAG+ G+
Sbjct: 293 RALDEFKRAKTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVA 352
Query: 524 TSLYTESNRDLVDTIRR 540
+ E R + I++
Sbjct: 353 IAFCAEDERAYLKDIQK 369
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 27/200 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
T+ LGLS +++AL+ G+ P+ +QA ++ PVL G+D++ A+TG+GKT ++++P I
Sbjct: 4 TTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSI 63
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L A +N K LVL P L Q+ + A A G ++ ++
Sbjct: 64 DRLREA----DNQTPFKS-----CRMLVLAPTRELAGQIAQSAKDYGAMAG---LKVHSI 111
Query: 204 CGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG +GK D++V+TP LL+ ID K + + V+ +V DEAD +L
Sbjct: 112 VGGTS--VGKDRNKLHRGTDILVATPGRLLDLIDQKAFK----LNAVEILVLDEADQMLD 165
Query: 256 GSFQNQVIRLINMFRFDEKQ 275
F + +R IN E+Q
Sbjct: 166 LGFIH-ALRQINDLVPAERQ 184
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 26/188 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W++LGL + +A+E G+ +P+ +Q ++ ++ GKDVV + TGSGKT +++VP+++K
Sbjct: 40 WQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPMLQK 99
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L +E RA L++ P L Q + L G +R A+ G
Sbjct: 100 L-----------KRREVNGTRA--LLIAPTRELALQTFKFTKELGRFTG---LRCAALVG 143
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G KPD+I++TP LL+ I R + V+Y+VFDEAD L F
Sbjct: 144 GDSIEEQFGAIHEKPDIIIATPGRLLHLIIEMNLR----LTTVQYLVFDEADRLFEMGFS 199
Query: 260 NQVIRLIN 267
Q+ ++
Sbjct: 200 EQLHEILK 207
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCT 480
A T+VF T+ V + + + A I+C + L R + F+ K + + T
Sbjct: 277 ANNEMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRSKQCLLLIVT 336
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
D AARG+DIP + + I F A F+HRVGR ARAG+ G SL +
Sbjct: 337 DVAARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLIS 384
>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 408
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 10/203 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + KQ + +ATL ++ A Q D IS N + P ++E+
Sbjct: 162 DVQRIMAHLPAKKQTLLFSATLLPELEEKA----LQPLNDPIKISANPPNQTVPEIEEQL 217
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V ++ LI +K+ S+ +VF + D A+ K L AGI H +
Sbjct: 218 YLVNKGSKAQVLIHLLKQH-----HWSQVLVFISARDNADALAKKLLKAGIRVAALHGNK 272
Query: 459 SLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
ER + L F Q+K V + TD ARGI I + VI D S ++HRVGRTARA
Sbjct: 273 DQTEREQILTQFKQQKIEVLIATDLLARGIHIEQLPVVINFDLPPSPAVYIHRVGRTARA 332
Query: 518 GQYGLVTSLYTESNRDLVDTIRR 540
GQ GL SL + ++D IR+
Sbjct: 333 GQTGLALSLVCHNENAILDAIRQ 355
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 41/249 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ L L+ L+ AL + P+ +Q ++ +LSG+D++ A+TGSGKT +Y +PL+
Sbjct: 1 MTFSELNLASSLLSALP-AELHTPTTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPLL 59
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+K P P +L++ P L QV + AL + V
Sbjct: 60 QKTL--------------PMTPHIQTLIIVPTRELATQV---SQALGLIAKPMHIDVCPV 102
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
CGG Q P +IV+TP LL+ I+ +++ + ++++V DEAD LL
Sbjct: 103 CGGVDQQWQQDQLAQNPQLIVATPGRLLDLIE----QQIINLSSLQHLVLDEADRLLEMG 158
Query: 258 FQNQVIRLI-------NMFRFDEKQLSRMNESGVEK---PLEMDNSSLTQPDLQDEENLQ 307
F V R++ F L + E ++ P+++ + Q + EE L
Sbjct: 159 FWPDVQRIMAHLPAKKQTLLFSATLLPELEEKALQPLNDPIKISANPPNQTVPEIEEQL- 217
Query: 308 DEYISDEGN 316
Y+ ++G+
Sbjct: 218 --YLVNKGS 224
>gi|390600267|gb|EIN09662.1| ATP-dependent RNA helicase dbp9 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 634
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 15/188 (7%)
Query: 76 DTFFADDNVTWKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
D D+ ++ S L RL+RAL + GF RP++VQA ++ L G+D++ A TGSG
Sbjct: 3 DPLLVDNKASFSSFSHILDARLLRALADLGFARPTLVQAKAIPLALEGRDILARARTGSG 62
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD- 192
KT +Y +P+I+K+ +A G + + PT +L+L P L EQV AL A
Sbjct: 63 KTAAYCIPVIQKVLSANGVAIDPRQQSAPTDKHTHALILVPTRELAEQVSSHLRALLAYC 122
Query: 193 NGEPLVRAVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
E +V VA G + K P ++VSTP+ +L + + + ++ R ++ +V
Sbjct: 123 ENEVIVSNVA--SGATSHLQKTLLEDRPQIVVSTPSRVLTLL---KSKTVDISR-IECLV 176
Query: 247 FDEADMLL 254
DEAD++
Sbjct: 177 IDEADLIF 184
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 473 KGGVFVCTD---AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
KGG TD RG+D +V+ V+ D +S+ + HRVGRTARAG+ G+ S
Sbjct: 388 KGGKVKSTDREYGVTRGVDFIDVACVLNFDLPSSSRAYTHRVGRTARAGRTGMSLS 443
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ +TWK LG+ D L +A E+ + P+ +Q S+ L GKD++ AETGSGKT ++ +P
Sbjct: 16 NEMTWKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQGKDIIGLAETGSGKTAAFALP 75
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++ L EN P R +L+L P L Q+ AL + G V+
Sbjct: 76 ILQALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCA 118
Query: 202 AVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 119 VIVGGMDMMSQALILAKKPHILIATPGRLIDHLENTKGFNL---RSLKFLVMDEADRILN 175
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F+ +V +++ + + K++ ++ + + P++++ S+ Q E
Sbjct: 176 MDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEK 231
Query: 306 LQDEYI 311
LQ YI
Sbjct: 232 LQQYYI 237
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 261 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 320
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 10/190 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + KN ++Q + +AT+P K A LK P IS L P +++
Sbjct: 167 EDIEFILKNVPENRQTLLFSATVPDPIAKLARRYLKD--PVHVNISPERLTV--PSIEQV 222
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ EV ++DAL R+ E RT++F T V +T+ L+ G H D
Sbjct: 223 FYEVREFEKLDALT-----RILDMEEAERTIIFCRTKKRVDELTEGLQARGYTAEALHGD 277
Query: 458 LSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ +R + + F+E G + V TD AARG+DI NV+HVI D ++HR+GRT R
Sbjct: 278 LNQVQRNRVMKRFKEGGSEILVATDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGR 337
Query: 517 AGQYGLVTSL 526
AG+ G SL
Sbjct: 338 AGRTGTAISL 347
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 27/182 (14%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+++K++GLS +I+ALE GF PS +QA ++ +L G D++ A+TG+GKT ++ +P+
Sbjct: 5 ELSFKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPI 64
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+E+L D + R +LVL P L QV + +G ++ V
Sbjct: 65 VERL-----DHRSK---------RVEALVLAPTRELAIQVAEEITKIGKFSG---IKVVP 107
Query: 203 VCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GGQ + V++ TP ++++I RR + V+ +V DEAD +L
Sbjct: 108 IYGGQSYDRQIRALEHGAQVVIGTPGRVMDHI----RRGTLKLDHVQMMVLDEADEMLDM 163
Query: 257 SF 258
F
Sbjct: 164 GF 165
>gi|51467996|ref|NP_001003876.1| probable ATP-dependent RNA helicase DDX56 [Danio rerio]
gi|49619091|gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio]
Length = 557
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D+V + +GL DRL++AL + G+ +P+++Q ++ L GKD++ A TGSGKT +Y V
Sbjct: 3 EDSVRFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAV 62
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
PLI+++ T+ K+ +A ++VL P L +QV M L+A VR
Sbjct: 63 PLIQRVLTS----------KQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRD-VR 111
Query: 200 AVAVCGGQGW----PI--GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ G PI KPD++VSTP+ + +I+ + ++ ++ +V DEAD+L
Sbjct: 112 VADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQ---NLQLHSSLEMLVIDEADLL 168
Query: 254 LCGSFQNQVIRLI 266
F+ + L+
Sbjct: 169 FSFGFEADLKNLL 181
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF 477
L+ G +T++F + VD Y + L+ I + +L + R + F + +
Sbjct: 248 LKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNY 307
Query: 478 VCTD----------------------------------AAARGIDIPNVSHVIQADFATS 503
+ +RGID NVS+VI DF TS
Sbjct: 308 IIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTS 367
Query: 504 AVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
++HRVGRTARA G S + + ++ + A
Sbjct: 368 VESYIHRVGRTARADNPGTALSFISHAELSMLSEVENA 405
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 24/226 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ + L++A E G+ PS +QA ++ L GKDV+ A+TGSGKT ++ +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + DSE + P P + VL P L Q+ AL AD +R +
Sbjct: 70 ALLEYVYDSEPKKG-RRPDPAFF-ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLV 124
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P VIV+TP L +++ + + + +KY+V DEAD LL F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSL---KSLKYLVLDEADRLLNEDF 181
Query: 259 Q---NQVIRLINM----FRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ NQ++ I + F F K++ ++ + + P++++ +S
Sbjct: 182 EKSLNQILEEIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +M+F T D + +L++ G ++ +R L F+ + + VCTD A
Sbjct: 261 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
>gi|383854020|ref|XP_003702520.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Megachile rotundata]
Length = 404
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ +TWK LG+ D L +A E+ + P+ +Q S+ L GKD++ AETGSGKT ++ +P
Sbjct: 16 NEMTWKDLGIVDVLCKACEDLKWKSPTKIQRESIPLTLQGKDIIGLAETGSGKTAAFALP 75
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++ L EN P R +L+L P L Q+ AL + G V+
Sbjct: 76 ILQALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCA 118
Query: 202 AVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 119 VIVGGMDMMSQALILAKKPHILIATPGRLIDHLENTKGFNL---RSLKFLVMDEADRILN 175
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F+ +V +++ + + K++ ++ + + P++++ S+ Q E
Sbjct: 176 MDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEK 231
Query: 306 LQDEYI 311
LQ YI
Sbjct: 232 LQQYYI 237
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V VI D T + D++HRVGRTARAG+
Sbjct: 246 KRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRS 305
Query: 521 GLVTSLYTESNRDLVDTIRR 540
G + T+ + +L I +
Sbjct: 306 GRSITFVTQYDVELYQRIEQ 325
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ + +++Q + +AT K A LK PD I + + ++
Sbjct: 172 DISRILQLLPKTRQSLMFSATFSEEITKLAKNFLK---PDPAVIKVARQNQTAATVTQEL 228
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ VT + D LI+ ++ R G ++ +VF N + + L+ GI H D
Sbjct: 229 LAVTERDKTDVLIDMLRTRGPEGGPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDK 288
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ EER L F+ V V TD AARG+DI + VI D SA D++HR+GRT RA
Sbjct: 289 TQEERQVALDGFKSGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRA 348
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G G+ L T + LV+ I + K
Sbjct: 349 GSKGVAVMLSTPGDARLVEAIEKLTK 374
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++S GL R++ A+ G+ P+ +Q ++ VL G DV+ AA+TG+GKT + +PL+
Sbjct: 3 SFESFGLDPRILSAIARMGYSEPTPIQTQAIPVVLKGGDVMGAAQTGTGKTAGFGLPLLA 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ +N+ P +L+L P L +QV A +AD PL V
Sbjct: 63 RILP------KANTSMSPARHPVRALILTPTRELADQVSDNLTAYAADT--PLRVGVVYG 114
Query: 205 GGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P +V+ +TP LL+++ K + V+ VV DEAD +L F
Sbjct: 115 GVDIRPQADMLRRGIEVLTATPGRLLDHVAQKSVN----LSQVEIVVLDEADRMLDMGFL 170
Query: 260 NQVIRLINMF 269
+ R++ +
Sbjct: 171 PDISRILQLL 180
>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
Length = 515
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 123/243 (50%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TWK LGL++ L +A E + PS +Q ++ L GKD++ AETGSGKT ++ +P++
Sbjct: 60 TWKDLGLNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILH 119
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L EN P R +LVL P L Q+ AL + G ++ V
Sbjct: 120 ALL------EN--------PQRYFALVLTPTRELAFQIGEQFEALGSGIG---IKCCVVV 162
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG QG + KP +I++TP L+++++ + + + +KY+V DEAD +L F
Sbjct: 163 GGMDMVAQGLQLAKKPHIIIATPGRLVDHLENLKGFNL---KAIKYLVMDEADRILNMDF 219
Query: 259 QNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ ++ +++ + F F K++ ++ + ++ P++++ S+ Q + LQ
Sbjct: 220 EVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN----KYQTVDQLQQ 275
Query: 309 EYI 311
YI
Sbjct: 276 YYI 278
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ K R ++ +AT+ KK A LK P +S Y +L++ +I +
Sbjct: 225 KILKVLPRERRTFLFSATMTKKVKKLQRASLKD--PVKVEVSNKYQTVD--QLQQYYIFI 280
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
V + L+ + E + M+F +T + +L+ G+ H +S
Sbjct: 281 PVKYKDVYLVHILNE-----LAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQN 335
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 336 KRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 395
Query: 521 GLVTSLYTESNRDLVDTIRR 540
G ++ T+ + +L I +
Sbjct: 396 GQAITMVTQYDIELYQRIEQ 415
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 24/226 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ + L++A E G+ PS +QA ++ L GKDV+ A+TGSGKT ++ +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + DSE + P P + VL P L Q+ AL AD +R +
Sbjct: 70 ALLEYVYDSEPKKG-RRPDPAFF-ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLV 124
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P VIV+TP L +++ + + + +KY+V DEAD LL F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSL---KSLKYLVLDEADRLLNEDF 181
Query: 259 Q---NQVIRLINM----FRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ NQ++ I + F F K++ ++ + + P++++ +S
Sbjct: 182 EKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +M+F T D + +L++ G ++ +R L F+ + + VCTD A
Sbjct: 261 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
>gi|67516603|ref|XP_658187.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|74681494|sp|Q5BFU7.1|DBP10_EMENI RecName: Full=ATP-dependent RNA helicase dbp10
gi|40747526|gb|EAA66682.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|259489152|tpe|CBF89188.1| TPA: ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BFU7] [Aspergillus
nidulans FGSC A4]
Length = 936
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L +++V + G
Sbjct: 153 LKS------------HSTKFGARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVG 197
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G G PD++++TP L+ N+D + +KYVVFDEAD L
Sbjct: 198 GDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 248
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ +F K L +G++ P + +D S PDLQ+
Sbjct: 249 EMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQN 308
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L+ AG + L R + NF+ + V TD AAR
Sbjct: 376 TIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAAR 435
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 436 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDAD 481
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 34/241 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+TWK LG+ D L +A E+ + P+ +Q ++ L GKD++ AETGSGKT ++ +P++
Sbjct: 18 ITWKDLGIVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPIL 77
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L EN P R +L+L P L Q+ AL + G V+ +
Sbjct: 78 QALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCAVI 120
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 121 VGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL---RSLKFLVMDEADRILNMD 177
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQDEY 310
F+ +V +++ + + K L + + +K ++ +SL P Q E LQ Y
Sbjct: 178 FEVEVDKILRVIPRERKTLL-FSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYY 236
Query: 311 I 311
I
Sbjct: 237 I 237
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 261 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 320
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|212275354|ref|NP_001130628.1| uncharacterized protein LOC100191727 [Zea mays]
gi|194689682|gb|ACF78925.1| unknown [Zea mays]
gi|413943771|gb|AFW76420.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 614
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T ++ L++ G H D + +ER + L +F+ + V TD A+R
Sbjct: 350 TLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERERALKSFKSGATPILVATDVASR 409
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+D+PNV+HVI D S D++HR+GRT RAG+ G T+L+TESN L
Sbjct: 410 GLDVPNVAHVINYDLPKSIDDYVHRIGRTGRAGKAGKATALFTESNHHL 458
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 21/203 (10%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+++ GL++ ++R + G+ P+ VQ ++ V++G+D++ A+TGSGKT ++ +P++
Sbjct: 82 FEAAGLAEAVLRNVARCGYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 141
Query: 146 LCTALGDS------ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
L G + + D+ PRA LVL P L Q+ A S G +R
Sbjct: 142 LVAPAGGGNGHGPRDRGSFDRVAAKPRA--LVLAPTRELAAQINEEAKKFSFQTG---LR 196
Query: 200 AVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG Q + K D++V+TP L++ ++ R R+ + +KY+V DEAD +
Sbjct: 197 VVVAYGGTPMFSQLRDLEKGVDLLVATPGRLVDLVE---RSRIS-LEAIKYLVMDEADRM 252
Query: 254 LCGSFQNQVIRLINMFRFDEKQL 276
L F+ Q+ ++++M +K +
Sbjct: 253 LNMGFEPQIRKIVDMMNMPKKSV 275
>gi|399046383|ref|ZP_10738806.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398055540|gb|EJL47607.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 492
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
+Q + +AT+P K+ A +KQ P I G ++++ + V + DA
Sbjct: 176 QRQVLLFSATMPDLVKRLAHRFMKQ--PPHIKIEGKQKTVE--KIEQFYYVVNQSDKTDA 231
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ +++ F T+VFANT V +T L+ G+ + DLS +R + +
Sbjct: 232 LVDVLEQEQPF-----LTIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQ 286
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E + V TD AARG+D+ V+HVI D ++HRVGRT RAGQ G SL +
Sbjct: 287 FREMRFQYLVATDIAARGLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSGKAISLIS 346
Query: 529 ESNRDLVDTIRRAAK 543
++L+ +A K
Sbjct: 347 PRQKNLMGRFAKATK 361
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ S G L++ +++ + P+ +Q ++ +L GKDV+ A+TG+GKT ++++P++
Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM---------ANALSADNGE 195
+L D + +L+L P L Q+ + N LS G
Sbjct: 64 RLDAGKRDIQ--------------ALILTPTRELSIQIAKEVEKLGKHLDVNVLSLHGGT 109
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ R ++ ++V TP +L+++ +R + F R + +V DEAD ++
Sbjct: 110 DIDRQLSKLK------STVHIVVGTPGRVLDHM---KRGSLHFGR-ISTLVLDEADKMME 159
Query: 256 GSFQNQVIRLI 266
F V ++I
Sbjct: 160 MGFLEDVEQVI 170
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ + ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
>gi|398815938|ref|ZP_10574597.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398033470|gb|EJL26769.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 496
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
+Q + +AT+P K+ A +KQ P I G R+++ + V + DA
Sbjct: 176 QRQVLLFSATMPDLVKRLAHRFMKQ--PPHIKIEGKQKTVE--RIEQFYYVVNQSDKTDA 231
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ +++ F T+VFANT V +T L+ G+ + DLS +R + +
Sbjct: 232 LVDLLEQEQPF-----LTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQ 286
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E + + TD AARG+D+ V+HVI D ++HRVGRT RAGQ G SL +
Sbjct: 287 FREIRFQYLIATDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLIS 346
Query: 529 ESNRDLVDTIRRAAK 543
++L+ +A K
Sbjct: 347 PRQKNLMARFAKATK 361
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ S G L++ +++ + P+ +Q ++ ++ GKD++ A+TG+GKT ++++P++
Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDIIGQAQTGTGKTAAFMLPILN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
L D + +L+L P L Q+ + L G+ L V +++
Sbjct: 64 ALEEGKRDIQ--------------ALILTPTRELSIQIAKEVEKL----GKHLNVNVLSL 105
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G G I K V+V TP +L+++ +R + F R + +V DEAD ++
Sbjct: 106 HG--GTDIDKQLSKLKETVHVVVGTPGRVLDHM---KRGSLHFGR-ISTLVLDEADKMME 159
Query: 256 GSFQNQVIRLI 266
F V ++I
Sbjct: 160 MGFLEDVEQVI 170
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ + L++A E G+ PS +QA ++ L GKDV+ A+TGSGKT ++ +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + DSE + P P + VL P L Q+ AL AD +R +
Sbjct: 70 ALLEYVYDSEPKKG-RRPDPAFF-ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLV 124
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P VIV+TP L +++ + + + +KY+V DEAD LL F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSL---KSLKYLVLDEADRLLNEDF 181
Query: 259 Q---NQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ NQ++ I F F K++ ++ + + P++++ +S
Sbjct: 182 EKSLNQILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +M+F T D + +L++ G ++ +R L F+ + + VCTD A
Sbjct: 261 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 40/260 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG++D L +A + G+ P+ +Q ++ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 25 SFKDLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V+ +
Sbjct: 85 ALL--------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQTTVIV 127
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP VI++TP L+++++ + + R +K++V DEAD +L F
Sbjct: 128 GGIDTMSQSLALAKKPHVIIATPGRLVDHLENTKGFNL---RALKFLVMDEADRILNMDF 184
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 185 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 240
Query: 309 EYISDEGNFEGDSDVEGLTE 328
YI F+ V L E
Sbjct: 241 YYIFIPSKFKDSYLVYILNE 260
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 267 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 326
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 327 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 378
>gi|428781308|ref|YP_007173094.1| DNA/RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428695587|gb|AFZ51737.1| DNA/RNA helicase, superfamily II [Dactylococcopsis salina PCC 8305]
Length = 467
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 31/188 (16%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++++SLGLS+ ++ LE GF +P+ VQ+ ++ +L GKDVV ++TG+GKT ++ +PL
Sbjct: 2 TISFQSLGLSEERVKQLEKLGFEQPTDVQSQAIPELLKGKDVVGQSQTGTGKTAAFSLPL 61
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+E++ D E T +A L+L P L +QV S D ++ +
Sbjct: 62 LEQI------------DVEDTVVQA--LILTPTRELAQQVTTAMKTFSHDRA---LKILT 104
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
VCGGQ PI + V+V TP +++ ++ K R + ++YVV DEAD +L
Sbjct: 105 VCGGQ--PIDRQIQTLKRGVQVVVGTPGRVIDLLNRKALR----LNTLRYVVLDEADEML 158
Query: 255 CGSFQNQV 262
F + V
Sbjct: 159 SMGFIDDV 166
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F T +T+ L+ AG YH DLS +R + + F++ + + V TD AARG
Sbjct: 246 LIFVRTKRTASEITQELQAAGYSADEYHGDLSQSQRERLVQRFRKSQVRLVVATDIAARG 305
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+D+ ++SHVI D + ++HR+GRT RAG+ G+ SL +++ + I R
Sbjct: 306 LDVQDLSHVINFDLPDNVETYIHRIGRTGRAGKTGVAISLSQPRDQNTIRQIER 359
>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 38/235 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+++LGLS + RA++ G+ P+ +Q ++ +L+G DVV A TGSGKT ++L+P+IEK
Sbjct: 9 FETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAAFLIPMIEK 68
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L E+SN+ A +++L P+ L Q + LS ++ + G
Sbjct: 69 LV------EHSNNAG------ARAVILSPSRELALQTFKFCKELSKYTD---LKIAILVG 113
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G PDVI++TP L++++ + R V+Y+VFDEAD L F
Sbjct: 114 GDSMEAQFEQLAGNPDVIIATPGRLMHHLSEVEGMSL---RTVEYIVFDEADRLFEMGFA 170
Query: 260 NQVIRLINMFRFDEKQ-----------LSRMNESGVEKP--LEMDNSSLTQPDLQ 301
Q +R I + +Q L+ ++G+ P + +D S PDLQ
Sbjct: 171 EQ-LRQIMSHLGESRQVLLFSATLPRLLADFAKAGLRDPHLVRLDVESRISPDLQ 224
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+ R++ + S+Q + +ATLP A A L+ D + + +P L+
Sbjct: 171 EQLRQIMSHLGESRQVLLFSATLPRLLADFAKAGLR----DPHLVRLDVESRISPDLQLS 226
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ V D + AL+ V+E + +T+VF T V + ++LKT GI+ +
Sbjct: 227 FFTVRHDEKPAALVHLVREVI---PAEQQTIVFVATKHHVEFLYELLKTEGIDISVVYGS 283
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ R + F+ K + + TD AARGIDIP + +VI DF F+HRVGR AR
Sbjct: 284 MDQAARKIHIAKFRAGKTKLLLVTDVAARGIDIPLLDNVINYDFPPKPKLFVHRVGRAAR 343
Query: 517 AGQYGLVTSLYT 528
AG+ G S T
Sbjct: 344 AGRTGTSYSFVT 355
>gi|109095726|ref|XP_001086008.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Macaca mulatta]
Length = 406
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 40/247 (16%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ + ++ L G+D++ AETGSGKT ++ +
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 81 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 123
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 180
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304
F+ +V +++ + D K++ ++ + ++ P++ SS Q E
Sbjct: 181 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVE 236
Query: 305 NLQDEYI 311
LQ YI
Sbjct: 237 KLQQYYI 243
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 252 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 311
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 312 GKAITFVTQYDVELFQRI 329
>gi|168019520|ref|XP_001762292.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686370|gb|EDQ72759.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
+GL RL+RAL G P+ VQA ++ +L GKDVV A+TGSGKT SYL+PL+ KL
Sbjct: 1 MGLDARLLRALSKKGLSYPTPVQAKAMPLILEGKDVVARAKTGSGKTLSYLLPLVHKLLA 60
Query: 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
G + PRA +VL P LC+QV A +L+ G L R V +
Sbjct: 61 EGGSKKG---------PRA--MVLVPTRELCQQVYDEATSLAEYCGATL-RVVQLATTMS 108
Query: 209 WPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
K PD++V+TPA + I + + +V DEAD+L ++ +
Sbjct: 109 TATMKMSLARVPDILVATPARIAACISQNVIQPAVLEESLAMLVLDEADLLFSYGYEEDL 168
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
RGID NV V+ D + ++HR+GRT RAG G+ SL + +++ I+
Sbjct: 353 RGIDFKNVRTVVNYDMPETVAGYIHRIGRTGRAGNAGISLSLVPPEDEEILKQIK 407
>gi|359437298|ref|ZP_09227366.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
gi|359444834|ref|ZP_09234601.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
gi|358027964|dbj|GAA63615.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
gi|358041403|dbj|GAA70850.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
Length = 415
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 30/298 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ SL L L+ A+E + + P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++++PL+
Sbjct: 5 SFSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLH 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN--ALSADNGEPLVRAVA 202
KL NS K+ P A ++L P L +QV AL +D L A
Sbjct: 65 KLL---------NSSKKDEPGIARVVILTPTRELAQQVFASFEKYALGSDIQGALAYGGA 115
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G Q + VIV+TP LL++I + + V +VFDEAD +L F +++
Sbjct: 116 SIGPQIKALKTAQVIVATPGRLLDHI----VKGSVVLSSVDSLVFDEADRMLDMGFIDEI 171
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS-DEGNFEGDS 321
R++ D + L + + + E+ L P+L + + + ++ + D
Sbjct: 172 KRILRHIPGDRQTLL-FSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDE 230
Query: 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA---------TLPINGKKTAGA 370
D + E S I K+WR+V + R+KQ A T I+G K+ GA
Sbjct: 231 DRK---RELVSHMIGMKNWRQVL-IFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGA 284
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAA 484
+ ++F T + K + G++ H D S R + L NF+E V V TD AA
Sbjct: 248 QVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DIP + +VI + A D++HR+GRT RAG+ GL SL + + L++ I
Sbjct: 308 RGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEEI 361
>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 627
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 37/253 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL DR++RAL + P+ VQA ++ LSG+D+++ ++TGSGKT ++++P I++
Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94
Query: 146 LCTA-------LGDSENSNSDKEPTP-PRAPS-LVLCPNVVLCEQVVRMANALSADNGEP 196
+ + + P P P PS LVL P L QV +A G
Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVT----TATAQYGRH 150
Query: 197 LVRAV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
L R V ++ GG +P PD+I++TP LL++ID R + + +VFD
Sbjct: 151 LRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFD 206
Query: 249 EADMLLCGSFQNQVIRLI-------NMFRFD---EKQLSRMNESGVEKP--LEMDNSSLT 296
EAD +L F + + ++ M F ++++ ++ E + +P +E+ + +
Sbjct: 207 EADRMLDMGFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVD 266
Query: 297 QPDLQDEENLQDE 309
Q ++++ + D+
Sbjct: 267 QSNIEERLHFTDD 279
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 294 ASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 353
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L ++
Sbjct: 354 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 404
>gi|433544706|ref|ZP_20501082.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432183978|gb|ELK41503.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 530
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
+Q + +AT+P K+ A +KQ P I G ++++ + V + DA
Sbjct: 176 QRQVLLFSATMPDLVKRLAHRFMKQ--PPHIKIEGKQKTVE--KIEQFYYVVNQSDKTDA 231
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ +++ F T+VFANT V +T L+ G+ + DLS +R + +
Sbjct: 232 LVDVLEQEQPF-----LTIVFANTQVRVQQLTARLQENGLTAQALYGDLSQSKREQLMRQ 286
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+E + V TD AARG+D+ V+HVI D ++HRVGRT RAGQ G SL +
Sbjct: 287 FREMRFQYLVATDIAARGLDVEGVTHVINYDLPNDVESYIHRVGRTGRAGQSGKAISLIS 346
Query: 529 ESNRDLVDTIRRAAK 543
++L+ +A K
Sbjct: 347 PRQKNLMGRFAKATK 361
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ S G L++ +++ + P+ +Q ++ +L GKDV+ A+TG+GKT ++++P++
Sbjct: 4 SFASFGFRPELMQGIQDLYYKEPTPIQEEAIPLILEGKDVIGQAQTGTGKTAAFMLPILN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM---------ANALSADNGE 195
+L D + +L+L P L Q+ + N LS G
Sbjct: 64 RLDAGKRDIQ--------------ALILTPTRELSIQIAKEVEKLGKHLDVNVLSLHGGT 109
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ R ++ ++V TP +L+++ +R + F R + +V DEAD ++
Sbjct: 110 DIDRQLSKLK------STVHIVVGTPGRVLDHM---KRGSLHFGR-ISTLVLDEADKMME 159
Query: 256 GSFQNQVIRLI 266
F V ++I
Sbjct: 160 MGFLEDVEQVI 170
>gi|126136425|ref|XP_001384736.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
gi|146286107|sp|A3LV40.1|DBP9_PICST RecName: Full=ATP-dependent RNA helicase DBP9
gi|126091958|gb|ABN66707.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
Length = 581
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGS 132
S+ + DDN +W S L RL++A++ GF P+++QA+++ L K D++ A TGS
Sbjct: 5 SASEAYVDDNSSWDSFHLDARLVQAIDQLGFEHPTLIQASAIPLALEEKRDIIAKASTGS 64
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL--S 190
GKT +Y++P+I L T +++ E S++L P L QV++ L
Sbjct: 65 GKTGAYVIPIIHNLLT--------DAEVESGNHHIKSIILVPTRELSNQVLQFVEKLLVY 116
Query: 191 ADNGEPLVRAVAVCGGQ---GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
++N + A Q + KP++I+STPA L+ ++ + + + V+ +
Sbjct: 117 SNNRINAINLSANLSDQVVNSLLMNKPEIIISTPAKLIQVLEKNANKDLIDLSTVRNLTI 176
Query: 248 DEADMLLCGSFQNQVIRL 265
DE D++L + + +L
Sbjct: 177 DEVDLVLSYGYLEDLQKL 194
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 43/144 (29%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD--- 481
+T+VF N +D Y + L+ GI C + +L + R + + + + + TD
Sbjct: 271 KTLVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEYNKNVYNLLIATDETN 330
Query: 482 ---------------------------------------AAARGIDIPNVSHVIQADFAT 502
+RG+D NV+ V+ D T
Sbjct: 331 DFTVEKDEQQQEESQDKKASSAKTKQSKKSKKQKKDTEYGVSRGVDFRNVACVLNFDLPT 390
Query: 503 SAVDFLHRVGRTARAGQYGLVTSL 526
++ ++HR+GRTARAG+ G+ S
Sbjct: 391 TSKAYIHRIGRTARAGKAGMALSF 414
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 40/260 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG++D L A + G+ P+ +Q ++ L G+D++ AETGSGKT ++ +P+++
Sbjct: 26 SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P R +LVL P L Q+ AL + G V + +
Sbjct: 86 ALLDA--------------PQRLFALVLTPTRELAFQISEQFEALGSSIG---VHSAVIV 128
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP +I++TP L+++++ + + R +K++V DEAD +L F
Sbjct: 129 GGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNL---RALKFLVMDEADRILNMDF 185
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D KQ+ ++ + ++ P++ SS Q E LQ
Sbjct: 186 ETEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 241
Query: 309 EYISDEGNFEGDSDVEGLTE 328
YI F+ V L E
Sbjct: 242 YYIFIPSKFKDSYLVYILNE 261
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 268 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 328 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379
>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|404393998|ref|ZP_10985802.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|348614316|gb|EGY63868.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
Length = 627
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 37/253 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL DR++RAL + P+ VQA ++ LSG+D+++ ++TGSGKT ++++P I++
Sbjct: 35 FAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQR 94
Query: 146 LCTA-------LGDSENSNSDKEPTP-PRAPS-LVLCPNVVLCEQVVRMANALSADNGEP 196
+ + + P P P PS LVL P L QV +A G
Sbjct: 95 ISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVT----TATAQYGRH 150
Query: 197 LVRAV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
L R V ++ GG +P PD+I++TP LL++ID R + + +VFD
Sbjct: 151 LRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFD 206
Query: 249 EADMLLCGSFQNQVIRLI-------NMFRFD---EKQLSRMNESGVEKP--LEMDNSSLT 296
EAD +L F + + ++ M F ++++ ++ E + +P +E+ + +
Sbjct: 207 EADRMLDMGFSDDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVD 266
Query: 297 QPDLQDEENLQDE 309
Q ++++ + D+
Sbjct: 267 QSNIEERLHFTDD 279
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 294 ASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 353
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L ++
Sbjct: 354 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 404
>gi|119471856|ref|XP_001258230.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|134034063|sp|A1DNG2.1|DBP10_NEOFI RecName: Full=ATP-dependent RNA helicase dbp10
gi|119406382|gb|EAW16333.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 934
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 92 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 151
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L G L ++V + G
Sbjct: 152 LKS------------HSTKVGARGLILSPSRELALQTLKVVKELG--RGTDL-KSVLLVG 196
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 197 GDSLEEQFAMMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 247
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ + K L +G+++P + +D S PDLQ+
Sbjct: 248 EMGFAAQLTEILHGLPANRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQN 307
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L AG + L R + NF+ + V TD AAR
Sbjct: 377 TIVFAATKHHVDYLYSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAAR 436
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 437 GIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDAD 482
>gi|156554399|ref|XP_001604593.1| PREDICTED: ATP-dependent RNA helicase p62-like [Nasonia
vitripennis]
Length = 551
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E +T++ L++ + + G +T++F T V +T+ ++ G C H D S
Sbjct: 353 EQEKETKLGTLLQEIGNVNDDGG---KTIIFVETKKKVENITRNIRRYGWPAVCMHGDKS 409
Query: 460 LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ER L F+ +KG + V TD AARG+D+ +V +VI D+ +S+ D++HR+GRT R+
Sbjct: 410 QQERDYVLREFRNKKGSILVATDVAARGLDVDDVRYVINFDYPSSSEDYIHRIGRTGRSQ 469
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N +DL++ +R A ++ P
Sbjct: 470 SSGTSYAFFTPQNGRQAKDLINVLREANQIINP 502
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 35/208 (16%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
FF + N D +++ ++ G+ P+ +QA +SGK++V A+TGSGKT +
Sbjct: 126 FFEEGN-------FPDYVMQGIKKQGYSEPTPIQAQGWPIAMSGKNMVGIAQTGSGKTLA 178
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEP 196
Y++P I + NS + P +L+L P L +Q+ +A+ + +
Sbjct: 179 YILPAIVHI----------NSQQPLNRGDGPIALILAPTRELAQQIQTVASDFGSLS--- 225
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
VR + GG P G +++++TP L++ ++ R +R Y+V D
Sbjct: 226 YVRNTCIFGGA--PKGGQARDLERGVEIVIATPGRLIDFLE----RGTTNLRRCTYLVLD 279
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQL 276
EAD +L F+ Q+ ++I R D + L
Sbjct: 280 EADRMLDMGFEPQIRKIIEQIRPDRQVL 307
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG+ D+L A EN G+ P+ +Q+ ++ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P LVL P L Q+ + L + G VR +
Sbjct: 107 ALMEA--------------PQTLFGLVLAPTRELAYQISQAFETLGSTIG---VRCAVIV 149
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +G KP +IV+TP LL++++ + + R +KY+ DEAD LL F
Sbjct: 150 GGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSL---RNLKYLAIDEADRLLDMDF 206
Query: 259 QNQVIRLINMF 269
+ ++I +
Sbjct: 207 GESLDKIIRIL 217
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
EF +++ ++F TV V +L+ G H LS R L F+ + +
Sbjct: 282 EFAGQSA--IIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 339
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
V TD AARG+DIP+V V D + ++HRVGRTARAG+ G+ S T+
Sbjct: 340 VATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ 391
>gi|372270527|ref|ZP_09506575.1| ATP-dependent DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 460
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 25/196 (12%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D NV + L L +RL++A++ GF +P+ VQ ++ L+G D+++ AETGSGKT +++
Sbjct: 5 DFNV-FAELMLHERLLKAIDKLGFTQPTPVQLETLPEALAGHDLIVGAETGSGKTLAFVA 63
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ D+ + N+ L+L P L EQV + L+A V
Sbjct: 64 PMLQHFL----DTPSPNTGTR-------GLILTPTRELAEQVCQSVKDLAAFT---RVNV 109
Query: 201 VAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ VCGG G+ P+V+V+TP L +++ R+ + ++Y+V DEAD +L
Sbjct: 110 MTVCGGTGFKEQAAEMRKNPEVLVATPGRLAEHLE----RQTLDLDDLEYLVLDEADRML 165
Query: 255 CGSFQNQVIRLINMFR 270
F+++V+ ++++ R
Sbjct: 166 DMGFRDEVMAIVDICR 181
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI-EVTVDTQVD 408
+Q + +ATL G + +L Q+ D L H P+ + I + + D
Sbjct: 183 QRQSMVFSATLTHRGVR---ELLPQVLKDP-----KELLLHTPQDAQASIRQQIILADDD 234
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
E + E L + + ++F NT D + K L+ H +++ +ER K ++
Sbjct: 235 KHKERLMEWLLANEQYDKAIIFTNTRDKAQWLAKSLQRQNRRSGVLHGEMTQDER-KHVM 293
Query: 469 NFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
G V V TD AARG+DI + VI D A + +HRVGRT R + GL L
Sbjct: 294 GLMRSGKINVLVATDVAARGLDIEGLDLVINFDMARKGDEHVHRVGRTGRQSREGLAVCL 353
Query: 527 YTESNRDLVDTIRRAAKL 544
+ + +L+ +I R KL
Sbjct: 354 ISHTEWNLMSSIERYLKL 371
>gi|161761223|pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 100 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 142
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 143 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 199
Query: 255 CGSFQNQVIRLINMFRFDEK 274
F+ +V +++ + D K
Sbjct: 200 NMDFETEVDKILKVIPRDRK 219
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ + L++A E G+ PS +QA ++ L GKDV+ A+TGSGKT ++ +P+++
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + DSE + P P + VL P L Q+ AL AD +R +
Sbjct: 70 ALLEYVYDSEPKKG-RRPDPAFF-ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLF 124
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P VIV+TP L +++ + + + +KY+V DEAD LL F
Sbjct: 125 GGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSL---KSLKYLVLDEADRLLNEDF 181
Query: 259 Q---NQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ NQ++ I F F K++ ++ + + P++++ +S
Sbjct: 182 EKSLNQILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +M+F T D + +L++ G ++ +R L F+ + + VCTD A
Sbjct: 261 STSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 34/242 (14%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+TWK LG+ D L +A E+ + P+ +Q ++ L GKD++ AETGSGKT ++ +P+
Sbjct: 17 KITWKDLGIVDILHKACEDLKWKSPTKIQCEAIPLALEGKDIIGLAETGSGKTAAFALPI 76
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
++ L EN P R +L+L P L Q+ AL + G V+
Sbjct: 77 LQALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCAV 119
Query: 203 VCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 120 IVGGMDMMSQALILAKKPHILIATPGRLVDHLENTKGFSL---RSLKFLVMDEADRILNM 176
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DLQDEENLQDE 309
F+ +V +++ + + K L + + +K ++ +SL P Q E LQ
Sbjct: 177 DFEVEVDKILRVIPRERKTLL-FSATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQY 235
Query: 310 YI 311
YI
Sbjct: 236 YI 237
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 261 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 320
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++FA+T + VT +L+ G + C H + R L F+ K V VCTD A+RG
Sbjct: 271 LIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRG 330
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T D++HRVGRTARAG+ G+ S T+ + +L I
Sbjct: 331 LDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRI 382
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 34/226 (15%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
+D N + F+ + ++ LG+ + A+E G+ PS +Q ++ L+GKD++ A
Sbjct: 14 ADANNETAEGFSG-SASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLA 72
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT ++++P+++ L P R +LVL P L Q+ A
Sbjct: 73 ETGSGKTGAFVIPILQSLLH--------------NPQRLYALVLAPTRELAYQIGEQFEA 118
Query: 189 LSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L A G ++ V GG Q KP V+++TP L+++++ + + R +
Sbjct: 119 LGASIG---LKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSL---RTM 172
Query: 243 KYVVFDEADMLLCGSFQ---NQVIRLI----NMFRFDEKQLSRMNE 281
K++V DEAD +L F+ NQ+++L+ N + F S++ +
Sbjct: 173 KFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATMTSKVRK 218
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 36/231 (15%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A N ++ LG+S L RA + GF +PS +QA ++ L GKD++ A+TGSGKT ++
Sbjct: 34 ASHNKSFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFS 93
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L EN P P A LVL P L Q+ + +L + G VR
Sbjct: 94 LPILQTLW------EN------PQPFFA--LVLAPTRELAYQISQQITSLGSGIG---VR 136
Query: 200 AVAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q + K P VIV+TP L+++++ + + + +KY+V DEAD L
Sbjct: 137 TAVLVGGMDMMSQSIALSKRPHVIVATPGRLMDHLENTKGFSL---KSLKYLVMDEADRL 193
Query: 254 L---CGSFQNQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSS 294
L G ++V+++I N + F +++++ + + KP+ ++ SS
Sbjct: 194 LDLDFGPIIDKVLKVIPKERNTYLFSATMTTKVAKLQRASLNKPVRVEVSS 244
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDA 482
+S ++F TV ++ IL+ G H ++ R +L F+ G + V TD
Sbjct: 277 SSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDV 336
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
A+RG+DIP V VI D T++ D++HRVGRTARAG+ G +L T+ + +++ I
Sbjct: 337 ASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQRI 392
>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
Length = 721
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 414 VKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE- 472
V+ER F R +VF T TK L+ GI H D S +RA+ L NF+E
Sbjct: 259 VRERGGF-----RVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREG 313
Query: 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
K V V TD +RGID+P V +VI D D++HR+GRT RAG G S T R
Sbjct: 314 KTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTR 373
Query: 533 DLVDTIRR 540
+L+ +I++
Sbjct: 374 NLLKSIQK 381
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 37/196 (18%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
T+ LGLS++ + A+ + G+ P+ VQ ++ VL G+D++ AA+TG+GKT ++ +P +
Sbjct: 24 ATFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTL 83
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVL-CPNVVLCEQVVRMANALSADNGEPLVR--- 199
++L D P +V+ P L +Q+ AD P+ R
Sbjct: 84 DQLRYRADDE-------------GPLMVIVTPTRELAQQI--------ADTCAPIARRTN 122
Query: 200 --AVAVCGGQGW--PIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V + GG G+ I K D+I++TP LL+ + R+ + V+ +V DEAD
Sbjct: 123 HSTVVLLGGVGYGPQIKKLRAGADIIIATPGRLLDLM----RQGAADLGNVEKLVLDEAD 178
Query: 252 MLLCGSFQNQVIRLIN 267
+L F QV +++
Sbjct: 179 RMLDMGFWPQVSEIVD 194
>gi|402828050|ref|ZP_10876941.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
gi|402286651|gb|EJU35113.1| putative ATP-dependent RNA helicase RhlE [Slackia sp. CM382]
Length = 721
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 414 VKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE- 472
V+ER F R +VF T TK L+ GI H D S +RA+ L NF+E
Sbjct: 259 VRERGGF-----RVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREG 313
Query: 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
K V V TD +RGID+P V +VI D D++HR+GRT RAG G S T R
Sbjct: 314 KTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTR 373
Query: 533 DLVDTIRR 540
+L+ +I++
Sbjct: 374 NLLKSIQK 381
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 37/196 (18%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
T+ LGLS++ + A+ + G+ P+ VQ ++ VL G+D++ AA+TG+GKT ++ +P +
Sbjct: 24 ATFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTL 83
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVL-CPNVVLCEQVVRMANALSADNGEPLVR--- 199
++L D P +V+ P L +Q+ AD P+ R
Sbjct: 84 DQLRYRADDE-------------GPLMVIVTPTRELAQQI--------ADTCAPIARRTN 122
Query: 200 --AVAVCGGQGW--PIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V + GG G+ I K D+I++TP LL+ + R+ + V+ +V DEAD
Sbjct: 123 HSTVVLLGGVGYGPQIKKLRAGADIIIATPGRLLDLM----RQGAARLGNVEKLVLDEAD 178
Query: 252 MLLCGSFQNQVIRLIN 267
+L F QV +++
Sbjct: 179 RMLDMGFWPQVSEIVD 194
>gi|327272752|ref|XP_003221148.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Anolis carolinensis]
Length = 399
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 40/248 (16%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+ ++K LG+++ L A + G+ P+ +Q S+ L G+D++ AETGSGKT ++
Sbjct: 12 AEAAKSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFA 71
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L TP R +LVL P L Q+ AL + G V+
Sbjct: 72 LPILQALL--------------ETPQRFFALVLTPTRELAFQISEQFEALGSSIG---VQ 114
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +
Sbjct: 115 TAVIVGGIDMMAQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRI 171
Query: 254 LCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303
L F+ +V +++ + D K++ ++ + ++ P++ SS Q
Sbjct: 172 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTV 227
Query: 304 ENLQDEYI 311
E LQ Y+
Sbjct: 228 EKLQQYYV 235
>gi|402466230|gb|EJW01762.1| hypothetical protein EDEG_00353 [Edhazardia aedis USNM 41457]
Length = 615
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 39/248 (15%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
++D++ D+ TW+SL L ++I +L N+ F PS VQA ++ L GKD+V+ ++ G+G
Sbjct: 378 TTDSYRGDE--TWESLCLDHKIINSLCNNNFTHPSPVQANTIPLTLEGKDLVVRSKNGTG 435
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP-------SLVLCPNVVLCEQ---VV 183
KT S+++P+++ L D +N+ R P +LVL P L Q V
Sbjct: 436 KTLSFVIPILQHLQQIEADYKNN---------RVPKSDLYNFALVLEPTRELAFQTGSVF 486
Query: 184 R-MANALSADNGEPLVRAVAVCGGQGWP--IGKPD----VIVSTPAALLNNIDPKRRRRM 236
R ++N+L+ R ++ GG + I K + +IVSTP +L+ I K +M
Sbjct: 487 RTVSNSLTH-------RIISTFGGTNYSDDIAKIERGVAIIVSTPGRILDFI-AKNIIKM 538
Query: 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLT 296
+ R +V DEAD +L F+ + +++ F + K L R +++ + + T
Sbjct: 539 DKFR---LIVIDEADKVLSKDFRVDIEKMVTFFNKNRKMLKRSHKNTKKSKNTLKKQIFT 595
Query: 297 QPDLQDEE 304
Q + +EE
Sbjct: 596 QNKMNNEE 603
>gi|345859080|ref|ZP_08811447.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
gi|344327834|gb|EGW39245.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
Length = 492
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 27/180 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGLS+ +IR++ N GF + +Q ++ L GKD++ A+TG+GKT +Y +PL+E
Sbjct: 3 TFTDLGLSEPIIRSIINMGFEETTPIQEKTIPTALEGKDLIGQAQTGTGKTAAYGIPLVE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ P + +VL P L QV N + + A+ +
Sbjct: 63 RIL--------------PQAEQIQGIVLAPTRELAVQVAEELNKIGQFK---RIHALPIY 105
Query: 205 GGQG--WPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQG W I +P +IV+TP L++++ RRR + +K VV DEAD +L F
Sbjct: 106 GGQGIDWQIRALRKRPHIIVATPGRLMDHM----RRRTIRLNDIKIVVLDEADEMLNMGF 161
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 10/192 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + K +Q + +AT+P + A +K+ P+ I + + ++
Sbjct: 163 EDIETILKEIPEERQTLLFSATMPRQIQNIAQRFMKE--PELISIKATGVTVSD--TEQH 218
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++EV+ + D L R+ ++VFA T V +++ L G H D
Sbjct: 219 YVEVSERLKFDVL-----SRILDIQSPDLSIVFARTKRRVDELSEALSKRGYSAEGIHGD 273
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ +R L F++ V V TD AARG+DI V+HV D ++HRVGRT R
Sbjct: 274 LTQSKRDSVLRQFKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGR 333
Query: 517 AGQYGLVTSLYT 528
AG+ GL +L T
Sbjct: 334 AGKTGLAITLVT 345
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG+++ L A + G+ P+ +Q S+ L G+D++ AETGSGKT ++ +P+++
Sbjct: 17 SFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQ 76
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V+ +
Sbjct: 77 ALLE--------------TPQRFFALVLTPTRELAFQISEQFEALGSSIG---VQTAVIV 119
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 120 GGIDMMAQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 176
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 177 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVEKLQQ 232
Query: 309 EYI 311
Y+
Sbjct: 233 YYV 235
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H ++ +R +L F+ K V + TD A+RG
Sbjct: 259 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLLATDVASRG 318
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 319 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 370
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 103/184 (55%), Gaps = 25/184 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L RL+R++++ GF +P+ +QA ++ V+ G+D++++++TGSGKT +YL+P++++
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQR 62
Query: 146 LCTALGDSENSNSDKEPTPPR-APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + P R A +L+L P L +QV A+ PL A+ +
Sbjct: 63 LLKS-----------RPLSKRDARALILAPTRELAKQVYAQLRLFVANT--PLTSAL-IV 108
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+ + +PD+IV+TP +++++ K F+ G++ ++ DEAD +L F
Sbjct: 109 GGENFNDQEKLLKREPDIIVATPGRFVDHLEHKS----VFINGLEVLILDEADRMLDLGF 164
Query: 259 QNQV 262
Q+
Sbjct: 165 MPQL 168
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+ + ++F T + + + +T G LS R + F K V V TD
Sbjct: 245 DIKQLIIFTATREDAERLALLCQTLGKTAVGLSGKLSQSSRNSVMQAFASGKYQVLVTTD 304
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
A+RG+D+ VSHVI D A +++HR+GRT RAG G SL
Sbjct: 305 LASRGLDLLQVSHVINFDLPKHAEEYVHRIGRTGRAGAKGTAISL 349
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAAR 485
++FA+T + VT +L+ G + C H + R L F+ K V VCTD A+R
Sbjct: 273 VLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASR 332
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
G+DIP+V VI D T D++HRVGRTARAG+ G+ S T+ + +L I
Sbjct: 333 GLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRI 385
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 33/210 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LG+ + A+E G+ +PS +Q ++ L+GKD++ AETGSGKT ++++P+++
Sbjct: 32 SFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQ 91
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L P R +LVL P L Q+ AL A G ++ V
Sbjct: 92 SLLR--------------NPQRLYALVLAPTRELAYQIGEQFEALGASIG---LKCACVV 134
Query: 205 GG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q KP V+++TP L+++++ + + R +K++V DEAD +L F
Sbjct: 135 GGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSL---RTMKFLVLDEADRMLSMDF 191
Query: 259 Q---NQVIRLI----NMFRFDEKQLSRMNE 281
+ NQ+++L+ N + F S++ +
Sbjct: 192 EEEINQIVQLMPAERNTYLFSATMTSKVRK 221
>gi|449498867|ref|XP_004160656.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 382
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R + K+ + QY+FV ATLP++ T L + FPD + I G +H +P L+E +
Sbjct: 149 LRSLMKSAPVNTQYLFVTATLPVDIYNT----LVENFPDCEVIMGPGVHRISPSLEEVLV 204
Query: 400 EVTVDTQV----DALIEAVKERLEFGAETS---RTMVFANTVDAVYAVTKIL-----KTA 447
+ + + + DA K+ L AE + +T+VF N ++ V L K +
Sbjct: 205 DCSGEDEQHKTPDAAFSNKKDALLQIAEGTPVLKTIVFCNKIETCRKVENALQRFDKKGS 264
Query: 448 GIECYCYHKDLSLEERAKTLVNF-----QEKGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
++ + +H L+ E R + F + VCTD A+RGID PNV HVI DF
Sbjct: 265 RLQVFPFHAALARESRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPR 324
Query: 503 SAVDFLHRVGRTARAG 518
+++ RVGRTAR
Sbjct: 325 DPSEYVRRVGRTARGA 340
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 115 VGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP 174
+ V+ GK +I+ ++GSGKT +YLVPLI++L + +S K P +++ P
Sbjct: 6 ISSVIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSSKSPQ-----IVIIVP 60
Query: 175 NVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIGK----PDVIVSTPAALLNNI 228
L QV+ ++S G P R++ V GG Q + DV+++TP L+ I
Sbjct: 61 TAELASQVLSNCRSIS-KFGVPF-RSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLI 118
Query: 229 DPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + ++ V DE D+L
Sbjct: 119 N----EGFLLLSNLRCAVMDEVDILF 140
>gi|212539832|ref|XP_002150071.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
gi|210067370|gb|EEA21462.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
Length = 948
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ +L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 98 FQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 157
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + G L++ P+ L Q +++ L G L +AV + G
Sbjct: 158 LKSHSGKVG------------VRGLIMSPSRELALQTLKVVKELG--RGTDL-KAVLLVG 202
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G +G PD++++TP L+ N+D + +KYVVFDEAD L
Sbjct: 203 GDSLEEQFGLMVGNPDIVIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 253
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ K L +G++ P + +D PDLQ+
Sbjct: 254 EMGFAAQLTEILHGLPATRQTLLFSATLPKSLVEFARAGLQDPTLIRLDTEGKISPDLQN 313
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIEC-YCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
T++FA T V + +L+ AG Y Y SL++ A+ + + + G + V TD
Sbjct: 384 TIIFAATKHHVDYIASMLREAGFAVSYAYG---SLDQTARNIQVQRFRAGATHILVVTDV 440
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTI 538
AARGIDIP +++VI DF + F+HRVGRTARAGQ G SL +++ DL +
Sbjct: 441 AARGIDIPILANVINYDFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFL 500
Query: 539 RRAAKLGQP 547
R LG+P
Sbjct: 501 GRKLVLGRP 509
>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
Length = 724
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 348 QRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407
+ +Q + +AT P N + A LK PD +++ + +++K +EV +
Sbjct: 477 KEERQTLMFSATFPENIQSLAREFLK---PDYLFVTVGQVGGACADVQQKILEVDQYEKK 533
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D L+E ++ G RTMVF T +T +L I H D ER + L
Sbjct: 534 DKLVEILQ-----GLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEAL 588
Query: 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+F+ K V V T+ AARG+DI NV HVI D + + +++HR+GRT R G G S
Sbjct: 589 ADFRFGKCHVLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISF 648
Query: 527 Y-TESNRDLVDTI 538
+ + NRDL ++
Sbjct: 649 FHSNQNRDLAPSL 661
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 29/194 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ L + L + +G+ + + VQ S+ VL+ +D++ A+TGSGKT ++L+P++
Sbjct: 294 LTFEEANLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPIL 353
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L G ++ +EP +++ P L Q+ A + ++ V V
Sbjct: 354 AHLMQD-GIPPPTSELQEPE-----VIIVAPTRELINQIFLDARKFAY---RTCIKPVVV 404
Query: 204 CGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
GG QG +++ +TP L++ I RR ++ + ++Y+V DEAD
Sbjct: 405 YGGTQTIHSLRQIYQGC-----NILCATPGRLIDII---RREKIGLTK-LRYLVLDEADR 455
Query: 253 LLCGSFQNQVIRLI 266
+L F + L+
Sbjct: 456 MLDMGFGPDMKTLV 469
>gi|449459868|ref|XP_004147668.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 648
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R + K+ + QY+FV ATLP++ T L + FPD + I G +H +P L+E +
Sbjct: 415 LRSLMKSAPVNTQYLFVTATLPVDIYNT----LVENFPDCEVIMGPGVHRISPSLEEVLV 470
Query: 400 EVTVDTQV----DALIEAVKERLEFGAETS---RTMVFANTVDAVYAVTKIL-----KTA 447
+ + + + DA K+ L AE + +T+VF N ++ V L K +
Sbjct: 471 DCSGEDEQHKTPDAAFSNKKDALLQIAEGTPVLKTIVFCNKIETCRKVENALQRFDKKGS 530
Query: 448 GIECYCYHKDLSLEERAKTLVNF-----QEKGGVFVCTDAAARGIDIPNVSHVIQADFAT 502
++ + +H L+ E R + F + VCTD A+RGID PNV HVI DF
Sbjct: 531 RLQVFPFHAALARESRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPR 590
Query: 503 SAVDFLHRVGRTARAG 518
+++ RVGRTAR
Sbjct: 591 DPSEYVRRVGRTARGA 606
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG S+ +I +L F RPS +QA + V+ GK +I+ ++GSGKT +YLVPLI+
Sbjct: 242 SFKELGCSEYMIESLRRQNFVRPSQIQAKAFSSVIDGKSCIISDQSGSGKTLAYLVPLIQ 301
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L + +S K P +++ P L QV+ ++S G P R++ V
Sbjct: 302 RLRQEELEGHQKSSSKSPQ-----IVIIVPTAELASQVLSNCRSISK-FGVPF-RSMVVT 354
Query: 205 GG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
GG Q + DV+++TP L+ I+ + ++ V DE D+L
Sbjct: 355 GGFRQKTQLDNLQEGVDVLIATPGRLMLLINEG----FLLLSNLRCAVMDEVDILF 406
>gi|328778265|ref|XP_391920.3| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Apis mellifera]
Length = 552
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L DR+++A+ G+ P+++Q ++ ++ GKD++I A TGSGKT ++ +PLI+
Sbjct: 18 SFYELELDDRILKAVAKLGWLEPTLIQEKTIPLMIEGKDILIRARTGSGKTAAFTIPLIQ 77
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV- 203
K+ + N + K+ L++ P+ LC+Q+ + +L+ V+A+ +
Sbjct: 78 KILS------NKQTRKQ---QEIKGLIIAPSKELCKQIHDVIISLTIKCSRE-VKAIDIS 127
Query: 204 ----CGGQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
Q + KPD++VSTP+ LL ++ K M+ + ++ ++ DEAD++ +
Sbjct: 128 PQVDLSAQKLLLAEKPDIVVSTPSKLLQHLKAK---NMKLKQSLETLIIDEADLIFSFGY 184
Query: 259 QNQVIRLINMF 269
+N++ ++N
Sbjct: 185 ENEIKDILNYL 195
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD--- 481
+T++F NTVD Y + L+ GI + +L R + + F + + +D
Sbjct: 267 KTIIFVNTVDRCYKLKLFLEQFGIATCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKS 326
Query: 482 --------------------AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
ARGID VS+V DF ++HR GRTAR G
Sbjct: 327 LEEPHIAKVKRGKRKKDKEFGIARGIDFQFVSNVFNFDFPPDINSYIHRAGRTARGKNDG 386
Query: 522 LVTSLYTESNRDLVDTI 538
V SL + R +++ +
Sbjct: 387 TVLSLVSIRERPILEDV 403
>gi|302802223|ref|XP_002982867.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
gi|300149457|gb|EFJ16112.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
Length = 431
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 6/187 (3%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P ++ AG L++ D +++ + R++++ I V + + D L
Sbjct: 221 RQTLMFSATFPKKIQRLAGEFLRK---DYVFLAIGEVGSSTSRIEQEIIFVQRNQKHDCL 277
Query: 411 IEAVKERLEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+ + G++++ +T+VF T + L++ G H D + EER + L
Sbjct: 278 GMVIDRQQMHGSKSNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAIHGDKTQEERRRALK 337
Query: 469 NFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+F+ + V T+ A+RGIDIP+VSHVI D T+ D++HR+GRT RAG+ G T+L+
Sbjct: 338 SFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTNIDDYVHRIGRTGRAGKRGFATALF 397
Query: 528 TESNRDL 534
+ + L
Sbjct: 398 CDGDAPL 404
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 47/195 (24%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P++VQ ++ L+ +D++ A+TGSGKT ++ P+IE + +EP
Sbjct: 33 FAVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIEGIL------------REPV 80
Query: 164 PPRAP--------SLVLCPNVVLCEQV-VRMANALS--------------ADNGEPLVRA 200
P R +L+L P L +Q + ++ +S AD
Sbjct: 81 PGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFVSFPRSFWWQIADEAFKFCYQ 140
Query: 201 VAVCGGQG------WP--IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V G W +G D++V+TP L + +D R M +R +KY+ DEAD
Sbjct: 141 TGVRVGVVYGGTRLWSDNLGGVDILVATPGRLNDLLD----REMVELRKLKYLTLDEADR 196
Query: 253 LLCGSFQNQVIRLIN 267
+L F+ Q+ R++
Sbjct: 197 MLDMGFEPQIRRIVE 211
>gi|261328097|emb|CBH11074.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 641
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 198/459 (43%), Gaps = 56/459 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W LGL L+RA+ + G+ P+ VQA ++ +LSG DV A TGSGKT ++L+PL+
Sbjct: 2 WIELGLCKALVRAISHIGYISPTPVQAQAIPAILSGTDVCARAVTGSGKTAAFLLPLLHL 61
Query: 146 LCT-ALGDSENSNSDKEPTPPRAPSLVLCPNVVL---CEQVVRMANALSADNGEPL-VRA 200
L T A NS + ++VL P L C+QV++ A + L +
Sbjct: 62 LLTRAPMKQTRMNSKRRYI----RAIVLVPTRELGMQCQQVLQQFLAFTTGLQVSLAIGG 117
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNI-DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ PD++V+TP L++ I + K + + GV+ VV DE D +L +
Sbjct: 118 VSPSAQLAALEACPDILVATPGRLVDLIHNHKGAQSAVDITGVEVVVLDECDKMLTVVLR 177
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQD------EENLQDEYISD 313
+QV+ ++ + +Q+ + + + E L +P D + L+ +++
Sbjct: 178 DQVVDILKRVPEETRQVLMFSATMTTEVDEFAKEHLFKPKNVDIGHVALQAKLRQQFV-- 235
Query: 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK 373
D+ ++ TEE + + + + +RS+ + ++ G +
Sbjct: 236 RVRLHADTSLQS-TEENRGDVAPSAEGCQKKTRSKRSR-----------DKPQSEG---R 280
Query: 374 QMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANT 433
Q P+ H ++K +++ V + T G +T++F
Sbjct: 281 QNHPEESESEAE----HMTKVKSRYL-VALCT---------------GYFREKTLIFTRY 320
Query: 434 VDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPN 491
+ + + G + EER +L F G V TD A+RG+DI +
Sbjct: 321 RTTAHRLRLLFNVIGFPSVELQGNQLQEERFASLEKF-ASGEVNYLFSTDVASRGLDIKD 379
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
VS VI D + ++HRVGRTAR G G SL ES
Sbjct: 380 VSTVINFDLPPTLTAYIHRVGRTARIGGSGTAVSLVDES 418
>gi|449019765|dbj|BAM83167.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 627
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF +T A A+ L G H D S ER +L F+ + + V TD AAR
Sbjct: 433 TLVFVDTKRAADALEDFLLRHGYAASSIHGDRSQREREDSLAAFRSGQTPILVATDVAAR 492
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV-DTIRRAAKL 544
G+DIPNV+HV+ + + D++HR+GRT RAG G+ TS E NR +V D I +
Sbjct: 493 GLDIPNVAHVVNYELPAAIDDYVHRIGRTGRAGNQGIATSFANEKNRGIVRDLIELLQEA 552
Query: 545 GQPV 548
GQ V
Sbjct: 553 GQEV 556
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 40/206 (19%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++++ G+ L+R + SG+ +P+ VQ ++ V++G+D++ A+TGSGKT ++++P++
Sbjct: 168 MSFETSGMDKILLRNVALSGYRKPTPVQRHAIPTVMAGRDLMSCAQTGSGKTAAFVLPVL 227
Query: 144 EKLCTALGDSENSNSDKEPTPPRA---------------PS-LVLCPNVVLCEQVVRMAN 187
++ G P PP + P+ L+L P L Q+
Sbjct: 228 HQMLLMGG----------PAPPPSSSGVGGISSRSRCSYPTYLILAPTRELASQIFSECR 277
Query: 188 ALSADNGEPLVRAVAVCGG------QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVR 240
+RA + GG Q + + D++V+TP LL+ ID R R+
Sbjct: 278 KFCYGTS---IRAAVIYGGSENTREQLRAVENQVDIVVATPGRLLDFID---RGRIHLAN 331
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLI 266
V+++ DEAD +L F+ Q+ +++
Sbjct: 332 -VRFLTLDEADRMLDMGFEPQIRQIV 356
>gi|253742309|gb|EES99150.1| DEAD box RNA helicase Vasa [Giardia intestinalis ATCC 50581]
Length = 658
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTV-DAVYAVTKILKTAGIECYCYHKDLSL 460
+VD +++ LI +K + T++F T D VY VTK+L AG+ H DL
Sbjct: 426 SVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLL-NAGLRVCEMHGDLEQ 484
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L NF++ K V V TD A RGIDI + HV+ DF ++HR+GRT RAG
Sbjct: 485 RERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFDFPKDIDAYIHRIGRTGRAGA 544
Query: 520 YGLVTSL 526
GL TS
Sbjct: 545 EGLATSF 551
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 15/194 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T + LG LIR +E + +P+ +Q ++ +LS D++ ++TGSGKT S+L P++
Sbjct: 179 TLQKLGFPPGLIRNIEKLHYKQPTPIQENAIPLILSSMDILATSQTGSGKTFSFLSPIVT 238
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
KL + + D+E + +++L P L +Q+ M L+ + +VR V
Sbjct: 239 KLINSHAKDTILSEDRESSTSFPLAVILSPTRELTQQIAFMCYQLTFKT-DLIVR--LVY 295
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+G K D++++TP L + ++ R ++ V+ +V DEAD +L F
Sbjct: 296 GGEGAREQKGLLRKGCDIVIATPGRLKDFLE----RGCLSLKYVQIMVLDEADKMLDMGF 351
Query: 259 QNQVIRLINMFRFD 272
+ Q+ L+ ++FD
Sbjct: 352 EPQIRDLV--YKFD 363
>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
HTCC2999]
Length = 442
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 107/192 (55%), Gaps = 24/192 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGLS +++A+ + G+ +PS +Q ++GPVL G+DV+ AA+TG+GKT ++ +P++
Sbjct: 4 SFSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L S + K P+P +L+L P L QV A ++ A +R++ V
Sbjct: 64 LL---------SETSKRPSPNNIKALILTPTRELAAQV---AESVKACAQHTQLRSMVVF 111
Query: 205 GG-------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG QG G D++++TP LL D ++ ++F + ++ +V DEAD +L
Sbjct: 112 GGVSINPQMQGLRRG-CDILIATPGRLL---DLHQQNAVKFSQ-LEILVLDEADRMLDMG 166
Query: 258 FQNQVIRLINMF 269
F + + R++ +
Sbjct: 167 FIHDIKRIMKLI 178
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 20/201 (9%)
Query: 339 DWRRVRKNYQRSKQYIFVAATL--PINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
D +R+ K +Q + +AT PI + KQ + IS + P +K+
Sbjct: 170 DIKRIMKLIPAKRQTLLFSATFSDPIR------ELAKQFTQEPIEISVTPKNSTTPLVKQ 223
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ ++ LI+ +K+ + + +VF T + + L I H
Sbjct: 224 LLVHAEKSSKTTLLIKLIKDN-----DWQQVLVFTRTKHGANRIAQKLGNKNITAAAIHG 278
Query: 457 DLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
+ S R K L +F K G V V TD AARGIDI + +VI D D++HR+GR
Sbjct: 279 NKSQGARTKALADF--KSGDVRVLVATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGR 336
Query: 514 TARAGQYGLVTSLYTESNRDL 534
T RAG G S T N D+
Sbjct: 337 TGRAGATGHAVSFAT--NEDI 355
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++FA+T + VT +L+ G + C H +S R L F+ K + VCTD A+RG
Sbjct: 272 LIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCTDVASRG 331
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T D++HRVGRTARAG+ G+ S T+ + +L I
Sbjct: 332 LDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRI 383
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 132/264 (50%), Gaps = 42/264 (15%)
Query: 64 AAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKD 123
A ++++ + D F D T++ LG+ L A+ + G+ +PS +Q ++ L+G+D
Sbjct: 11 AESIINPSGDNCDGFSGDQ--TFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRD 68
Query: 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183
++ AETGSGKT ++++P+++ L +P R +LVL P L Q+
Sbjct: 69 LIGLAETGSGKTGAFVIPILQSLLR--------------SPQRLYALVLAPTRELAYQIS 114
Query: 184 RMANALSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRME 237
AL A G ++ V GG Q KP +I++TP L+++++ + +
Sbjct: 115 EQFEALGASIG---LKCACVVGGIDMMNQQIALARKPHIIIATPGRLVDHLENTKGFSL- 170
Query: 238 FVRGVKYVVFDEADMLLCGSFQ---NQVIRLI----NMFRFD---EKQLSRMNESGVEKP 287
R +K++V DEAD +L F+ NQ+++L+ N + F +++++ + + P
Sbjct: 171 --RTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTYLFSATMTSKVAKLQRASLLNP 228
Query: 288 LEMDNSSLTQPDLQDEENLQDEYI 311
++++ + ENL+ Y+
Sbjct: 229 IKIEITH----KFATPENLRQHYL 248
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 26/183 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ LGL + +A+E GF +P+ +Q ++ ++ GKDVV + TGSGKT ++++P+++K
Sbjct: 26 WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ RA L++ P L Q ++ L G +R + G
Sbjct: 86 L-----------KGRDTKGIRA--LMVSPTRELALQTFKVVKELGRFTG---LRCACLVG 129
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + PD++++TP LL+ I + R++F V+YVVFDEAD L FQ
Sbjct: 130 GDVLEDQFSTIHENPDILLATPGRLLHVI-VEMDLRLQF---VQYVVFDEADRLFEMGFQ 185
Query: 260 NQV 262
+Q+
Sbjct: 186 DQL 188
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD 481
E +T+VF T+ V V IL AGI+C + L R + + F EK + V TD
Sbjct: 290 ENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKFHEKQNNILVVTD 349
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DIP + VI F + A ++HRVGR ARAG+ G SL
Sbjct: 350 VAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVARAGRSGTAISL 394
>gi|339449340|ref|ZP_08652896.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 496
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ +K LGLSD L++A+E SGF P+ +QA ++ +L G+DV+ A+TG+GKT ++ +P++
Sbjct: 1 MKFKDLGLSDSLLKAIEKSGFDEPTPIQAQTIPLLLKGQDVIGQAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+++ D N P +LV+ P L Q + L G R V
Sbjct: 61 QEI-----DLNN---------PDVQALVISPTRELAIQTQKEMQRLGGVEG---ARVQVV 103
Query: 204 CGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K P ++V TP +L++I+ RR + VKY+V DEAD +L
Sbjct: 104 YGGSDIRQQIRDLKKTPQIVVGTPGRILDHIN----RRTLKLGHVKYLVLDEADEMLNMG 159
Query: 258 FQNQVIRLINMFRFDEKQL 276
F + + +I D + L
Sbjct: 160 FLDDIESIIKNIPSDRQTL 178
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 12/208 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + KN +Q + +AT+P K+ V Q D I+ + + +
Sbjct: 163 DIESIIKNIPSDRQTLLFSATMPAPIKR----VGVQFMRDPKQITVKSKELTTDLVDQYY 218
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSR-TMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V + + D + RL F +T + T+VF T V V+K L G H D
Sbjct: 219 VKVKDNEKFDTMT-----RL-FDVQTPKVTIVFCRTKRRVDEVSKGLIARGYRAAGLHGD 272
Query: 458 LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ + R + + F+ +K V TD AARGID+ V++V D ++HR+GRT R
Sbjct: 273 LTQKRRTQIMNEFKNDKINYLVATDVAARGIDVSGVTYVYNFDIPQDPESYVHRIGRTGR 332
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKL 544
AG +G + T + + I + K+
Sbjct: 333 AGHHGTSVTFVTPNEMSYLRGIEKLTKV 360
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 40/243 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ P+ +Q ++ L G+D++ AETGSGKT ++ +P++
Sbjct: 26 TFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILN 85
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L TP R +LVL P L Q+ AL + G V +
Sbjct: 86 ALLD--------------TPQRFFALVLTPTRELAFQISEQFEALGSSIG---VECAVIV 128
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP VI++TP L+++++ + + R +KY+V DEAD +L F
Sbjct: 129 GGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDF 185
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ +V +++ + D K++ ++ + ++ P++ SS Q E LQ
Sbjct: 186 ETEVDKILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQ 241
Query: 309 EYI 311
Y+
Sbjct: 242 YYL 244
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 268 MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 328 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|440295520|gb|ELP88433.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 672
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 39/199 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS +++ + + GF P+ +Q ++ +++G DV+ A TGSGKT +YLVP+IEK
Sbjct: 14 FQSMGLSKHVLQGILHKGFKVPTPIQRKAIPAIMTGVDVIAMARTGSGKTAAYLVPIIEK 73
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D S+V+CP L Q V++ N L+ +RA + G
Sbjct: 74 LGFHSEDG-------------VRSIVICPTRELALQTVKVFNELTFKTN---LRASLIIG 117
Query: 206 G-----QGWPIGK-PDVIVSTPAALL-----NNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G Q + K PD+IV+TP L NI +R V V FDEADM+
Sbjct: 118 GSKLYEQFENLEKNPDIIVATPGRLTFILESANISLQR---------VDIVCFDEADMMF 168
Query: 255 CGSFQNQ---VIRLINMFR 270
F Q ++RL+ + R
Sbjct: 169 EQGFSEQISDIVRLLPLSR 187
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
S+Q++ +AT+P ++ G LK+ + I + +P L+ + V +
Sbjct: 186 SRQFLLFSATIP----QSLGVFLKKTLKRPEIIRLDTEDKLSPDLENIFYHVKEVEKDGH 241
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ + E++ + +T++F T V + +LK + ++R L
Sbjct: 242 LLWLLLEKI---PKEEQTVIFCATRHEVEYLGALLKQYKVNSSILFGKADQQDREINLKK 298
Query: 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
F+ ++ + TD AARG+DIPN+ +VI DF +SA ++HR GR ARAG+ G
Sbjct: 299 FRNDENKIMFVTDVAARGVDIPNLDNVINYDFPSSAKLYIHRCGRVARAGRIG 351
>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 453
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 109/193 (56%), Gaps = 29/193 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++++L LS +++A++ G+ +P+ +QA S+ LSG+D++ +A+TG+GKT S+++P +
Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
E+L T P+P R LVL P L QVV +A+ + VR
Sbjct: 61 ERLLT-------------PSPLRGKGPRILVLTPTRELAIQVV---DAVRSYGKFMRVRC 104
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
++ GG Q + +P D+IV+TP L++++D RR + F R ++ +V DEAD +L
Sbjct: 105 GSILGGMPYRDQMMLLAQPVDIIVATPGRLIDHLD---RRSINFSR-LEMLVLDEADRML 160
Query: 255 CGSFQNQVIRLIN 267
F V R+ N
Sbjct: 161 DMGFSEDVDRIAN 173
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVC 479
A ++ ++F+ T + L + G H D+S R KT + +G V V
Sbjct: 242 ASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKT-ITMMRRGKVRLLVA 300
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
TD AARG+D+ +SHVI D A D++HR+GRT RAG G+ S + + +D I
Sbjct: 301 TDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDRIE 360
Query: 540 R 540
R
Sbjct: 361 R 361
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 121/223 (54%), Gaps = 28/223 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ L LS ++++L+ GF P+ VQA+++ L GKD+V +A+TGSGKT +YL+P+IE
Sbjct: 197 TFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIE 256
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPLVRA 200
+L +NS S K +++L P L QV ++ +S N V
Sbjct: 257 RLLYV----KNSTSTK--------AIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGG 304
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSFQ 259
+++ + +PD++++TP L+++I R F V V+ ++ DEAD +L FQ
Sbjct: 305 LSLKQQEQQLKTRPDIVIATPGRLIDHI----RNSPSFSVEDVQVLIIDEADRMLEEGFQ 360
Query: 260 NQVIRLINMFRFDEKQL----SRMNESGVEKPLEMDNSSLTQP 298
++ ++++ ++Q + MN + ++ +++ SL +P
Sbjct: 361 EELTEILSLIPKQKRQTLLFSATMNNTKIQDLVQL---SLNKP 400
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAAR 485
RT+VF T + + IL G+ H L+ E+R + F+ V +CTD AAR
Sbjct: 443 RTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQEQRLANVKAFKNNVNVLICTDLAAR 502
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
G+DI + +VI D + + HRVGRTARAG+ G S ES +D
Sbjct: 503 GLDI-RIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQD 549
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 31/191 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS +++ + G+ +P+ +Q ++ VL G+DVV A TGSGKT ++LVP++E+
Sbjct: 58 FQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFLVPILER 117
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L G S + T PRA L+L P L Q + A L +R+ + G
Sbjct: 118 LG---GRSPH-------TGPRA--LILSPTRELALQTHKFAKELGKFTD---LRSTVILG 162
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G Q I + PD++++TP L+ + ME + VKYVVFDEAD L
Sbjct: 163 GDSMEDQFEAIHENPDLLIATPGRFLHVV-------MEMNLRLNSVKYVVFDEADRLFEM 215
Query: 257 SFQNQVIRLIN 267
FQ Q+ +++
Sbjct: 216 GFQEQLTEVLH 226
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAAR 485
T +F T + IL+ AG+ C + L R + FQ + V + TD AAR
Sbjct: 301 TFIFVATRHHAEYLRDILERAGVTCTYVYSSLDQAARRINVSKFQARQVPVMLVTDVAAR 360
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
G+DIP + +VI F F+HRVGR ARAG+ G SL
Sbjct: 361 GLDIPLLDNVINYSFPPRPKLFVHRVGRVARAGRTGTAYSL 401
>gi|383455859|ref|YP_005369848.1| ATP-dependent RNA helicase [Corallococcus coralloides DSM 2259]
gi|380734128|gb|AFE10130.1| ATP-dependent RNA helicase [Corallococcus coralloides DSM 2259]
Length = 424
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++KSLGLS + A++ + FG P+ +QA ++ P LSG+DV+ A TG+GKT +YL+P+
Sbjct: 2 SASFKSLGLSPETLGAVKRARFGTPTPIQAQAIPPALSGRDVIGCAATGTGKTAAYLLPM 61
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAV 201
IE+ G L+L P L +QV A GEPL V V
Sbjct: 62 IERFAGEKGTR---------------GLILTPTRELAQQVEEQARFF----GEPLGVLPV 102
Query: 202 AVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG+ +P +IV+TP L++ + K + ++ +V DEAD +L
Sbjct: 103 LIVGGEDMNAQVDALRERPSLIVATPGRLVDLLGVK----AVNLHRIQTLVLDEADRMLD 158
Query: 256 GSFQNQVIRLINMFRFDEKQL----------SRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F Q+ ++++ + + L +R + + KP+ ++ + P + E++
Sbjct: 159 MGFLPQINQILHALPRERQTLLFSATLGADVTRFGQRALHKPVRVEVTPSGTPAPRAEQH 218
Query: 306 L 306
L
Sbjct: 219 L 219
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVC---TDAAA 484
+VF T + ++L AG + H + +R + L F+ G + C TD AA
Sbjct: 243 LVFVRTQQRADKMKELLAAAGHKSAALHAGRTQAQRRQALEGFRR--GQYRCLVATDLAA 300
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
RG+D+ ++ HVI D D++HR+GRT
Sbjct: 301 RGLDVDDIGHVISLDVPHGPEDYVHRIGRT 330
>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 836
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ + RA+ G+ P+ +Q S+ +LSGKDVV A TGSGK+ ++L+PLIEK
Sbjct: 28 FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEK 87
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L E+S T LVL P L Q ++ L+ +R + G
Sbjct: 88 L------KEHS------TRVGLRGLVLAPTRELALQTLQFTKGLAKYTS---LRVSLIVG 132
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G+G PD++V+TP L++++ + +F ++ V+YVVFDEAD L F
Sbjct: 133 GEGMEQQFSALASNPDILVATPGRLMHHL----QEIPDFNLKSVEYVVFDEADRLFEMGF 188
Query: 259 QNQVIRLINMF 269
+Q+ +++
Sbjct: 189 ADQLHEILSQM 199
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
LK + V D + + V++ F + +T++F T V + ++L IE C
Sbjct: 242 LKMAFFTVRSDDKPAVFVHLVRD---FLPKNDQTIIFTATRHHVEFLHQLLIANDIESSC 298
Query: 454 YHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
+ ++ R + F+ K + + TD AARGIDIP +++VI F +A F+HRVG
Sbjct: 299 VYGEMDQTSRKLNIAKFRAGKTNLLLVTDVAARGIDIPLLNNVINYSFPPTAKLFVHRVG 358
Query: 513 RTARAGQYGLVTSL 526
R ARAG+ G SL
Sbjct: 359 RAARAGKSGTAFSL 372
>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
Length = 489
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E ++ ++F T +T+ L+ G H D ER L
Sbjct: 294 DKMIKELEKIMEDKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVL 353
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HVI D+ ++ D++HR+GRT RAG G +
Sbjct: 354 DQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITY 413
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N RDLV +R A ++ P
Sbjct: 414 FTTDNAKQARDLVGVLREAKQVIDP 438
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G ++ ++ GF P+ +QA LSG+DVV AETGSGKT +Y +P I +
Sbjct: 67 GFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI--- 123
Query: 150 LGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG 208
N+ P P L+L P L V++ +S +R V GG
Sbjct: 124 -------NAQPLLAPGDGPIVLILAPTRELA---VQIQQEISKFGKSSRIRNTCVYGGV- 172
Query: 209 WPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
P G +V ++TP L++ ++ + +R V Y+V DEAD +L F+
Sbjct: 173 -PKGPQIRDLQRGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLDMGFEP 227
Query: 261 QVIRLINMFRFDEKQL 276
Q+ ++I R D + L
Sbjct: 228 QIRKIIGQIRPDRQTL 243
>gi|410863319|ref|YP_006978553.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
gi|410820581|gb|AFV87198.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii AltDE1]
Length = 459
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 31/190 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T K L ++ + +AL++ G + S +QA S+ L GKDV+ A+TGSGKT +++P +E
Sbjct: 5 TLKQLDINPAITKALDSQGIHQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALE 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ E +++LCP L EQV + + + D G ++ +C
Sbjct: 65 KI--------------EVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGN--IKVTTLC 108
Query: 205 GGQGWPIG--------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ P+G P +IV TP ++++++ +RR++ R VK V DEAD +L
Sbjct: 109 GGQ--PMGPQIQSLKHSPHIIVGTPGRVMDHVE---KRRIDL-RNVKLRVLDEADRMLDM 162
Query: 257 SFQNQVIRLI 266
F++ +R+I
Sbjct: 163 GFEDD-LRII 171
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF N V V L G D+ +R L+ F V V TD AARG
Sbjct: 246 IVFCNRKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATDVAARG 305
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DI +V+ VI + +HR+GRTARAG G+ +L +E + I
Sbjct: 306 LDIDDVACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKI 357
>gi|310800598|gb|EFQ35491.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 777
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D W LGLS L+ A+ F +P+ +Q++++ +L+G DV+ A TGSGKT ++ +P
Sbjct: 203 DMTPWVDLGLSPALVAAIAKLKFAKPTNIQSSTIPDILAGHDVIGKASTGSGKTLAFSIP 262
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
++E+ N++ ++ P P +L+L P L Q+ L A L+ A
Sbjct: 263 IVEEWVDKHDGDGNADGERPSKPDNTPFALILSPTRELAHQITNHIKNLCAG----LLNA 318
Query: 201 VAVC---GG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
VC GG Q + K D+++ TP L I R F R ++Y+V DEAD
Sbjct: 319 PFVCSVTGGLSVFKQQRQLAKADIVIGTPGRLWEVISGSRELLAGF-RKIRYLVVDEADR 377
Query: 253 LLC-GSFQN--QVIRLINMFRFDEKQLSRMNESGV 284
LL G F+ Q++ ++ +++ NE G+
Sbjct: 378 LLSEGHFKEAGQILDALDREVIEDEGEDYDNEKGL 412
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ----EKGGVFVCTD 481
RT+VF N++ AV + L+ I H ++ + R +++ F+ V + TD
Sbjct: 503 RTLVFTNSISAVRRLAPFLQNLNINATALHSQMAQKARLRSIERFKASKPNTTAVLIATD 562
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARG+DIP + VI +A ++HR GRTARA + GL S+ ++V T R A
Sbjct: 563 VAARGLDIPGIDQVIHYHVPRAADMYVHRSGRTARAERTGL--SIILCGPDEVVPTRRLA 620
Query: 542 AKL 544
AK+
Sbjct: 621 AKV 623
>gi|367005897|ref|XP_003687680.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
gi|357525985|emb|CCE65246.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
Length = 604
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 29/213 (13%)
Query: 68 VSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVI 126
+S N ++ + DD+VT+ S+ L RL++A++ +G+ P+++QA ++ L K D++
Sbjct: 1 MSSSNDTALDAYIDDSVTFDSMKLDPRLLQAIKRNGYKNPTLIQATAIPLALQEKRDIIA 60
Query: 127 AAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186
A TGSGKT +YL+P+I+ T L +N +D + ++L P L +QV +
Sbjct: 61 KASTGSGKTLAYLIPVIQ---TILDYQQNKGNDVDSNSSATLGIILVPTRELAQQVTEVL 117
Query: 187 NAL----SADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALL----NNIDPKR 232
+ + S D +R++ + G + KP+++VSTP+ LL N+D
Sbjct: 118 DKMILYCSKD-----IRSLNIAGDISPAVLTSLLLEKPEIVVSTPSRLLGLLETNVDSLS 172
Query: 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
+ +K++V DE D++L ++ + ++
Sbjct: 173 ------LDDLKFLVIDEVDLVLTFGYKEDLTKI 199
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RG+D NV+ V+ D T+A ++HRVGRTARAG+ G S
Sbjct: 391 GVSRGVDFQNVACVLNFDLPTTAKSYVHRVGRTARAGKSGTAISF 435
>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVC 479
+T ++F T + + LK++GI H D +R L +F K G+ V
Sbjct: 537 QTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDF--KSGITPILVA 594
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
TD A+RG+DIPNV+HVIQ D D+ HR+GRT RAG G+ TS Y +NR+L
Sbjct: 595 TDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYDRNNRNLA 650
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L + L + G+ P+ VQ + L+G D++ A+TGSGKT ++LVP++
Sbjct: 290 SFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVH 349
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ G S + P ++++ P L Q+ L+ + V
Sbjct: 350 YILKN-GVSPAKDRISHPI-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVY 400
Query: 205 GGQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG +P + D++V+ P L + D R + VK+++ DEAD +L F+ Q+
Sbjct: 401 GGTPYPTRFENDILVACPGRLKDIFD----RNIVSFSCVKFLILDEADRMLEMGFEEQIE 456
Query: 264 RLI 266
L+
Sbjct: 457 YLV 459
>gi|340027405|ref|ZP_08663468.1| ATP-dependent RNA helicase SrmB [Paracoccus sp. TRP]
Length = 685
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ + ++Q +F +AT M P+ + I+ +LH R++
Sbjct: 167 DIERIFQLTPFTRQTLFFSAT---------------MAPEIERITDTFLHLPE-RIEVAR 210
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSR----------------TMVFANTVDAVYAVTK 442
T +T L+E R + A+ R ++F N V V K
Sbjct: 211 QATTSETITQKLVELTPTRRDQTAKQKRELLRALIHAEGEGLKNAIIFCNRKTDVDIVAK 270
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFA 501
LK G + H DL R TL F++ F V +D AARG+DIP VSHV D
Sbjct: 271 SLKVHGFDAAPIHGDLDQRHRMATLDGFRDGTLRFLVASDVAARGLDIPAVSHVFNFDLP 330
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
+ A D++HR+GRT RAG+ G S+ T ++ L+ I K P
Sbjct: 331 SHAEDYVHRIGRTGRAGRQGTAISISTPADEKLLGAIEALVKQALP 376
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L ++++A+ +G+ P+ +QA ++ P L G+DV+ A+TG+GKT S+ +P I +
Sbjct: 4 FSDLKLDPKVLKAIAEAGYEAPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPTITR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADNGE 195
L + PR SLVLCP L QV R+ AL
Sbjct: 64 LGRGRARARM---------PR--SLVLCPTRELAAQVAENFDIYAKYTRLTKAL------ 106
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
L+ V+ DV+++TP LL++ + R + GV+ +V DEAD +L
Sbjct: 107 -LIGGVSFAEQDRLIDRGVDVLIATPGRLLDHFE----RGKLLLTGVEIMVVDEADRMLD 161
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F + R+ + F + L
Sbjct: 162 MGFIPDIERIFQLTPFTRQTL 182
>gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
Length = 465
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVF 477
G+ RT++F T V V + L AG+ H + R +TL +F + V
Sbjct: 248 HIGSRPGRTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVL 307
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
V TD AARGI + ++ V+ D T A D+LHR GRTARAG+ G+V +L TE R V+
Sbjct: 308 VATDVAARGIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERAAVEK 367
Query: 538 IRRAAKL 544
+ R A L
Sbjct: 368 LTRQAGL 374
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ +LGL + AL+ G P +QAA++ VL+G+DV+ A TGSGKT ++ +P++
Sbjct: 15 TFLALGLPAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLV 74
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L A PR +VL P L Q+ R + + G +R V
Sbjct: 75 RLKGAASRRGY---------PR--GVVLVPTRELALQIERALDEPALSVG---LRVANVV 120
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G G PI + D++V+TP L +++ + + V + DEAD +
Sbjct: 121 G--GVPIKRQAETLSRGVDLLVATPGRLADHLA----QGSVSLDDVTVLALDEADHMADL 174
Query: 257 SFQNQVIRLIN 267
F QV +++
Sbjct: 175 GFLPQVTTILD 185
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ ++ MVF NT+++ AV L I YH ++ EER
Sbjct: 349 ENKLEALLQVLEPSL---AKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEER 405
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+ + G VCTD AARG+D+ +V HVI DF ++++D+LHR GRTAR G
Sbjct: 406 VENLNKFRNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAK 464
Query: 521 GLVTSLYTESNR 532
G+ T + R
Sbjct: 465 GVAKKDVTLATR 476
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++
Sbjct: 109 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 168
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 169 LLRR---DEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSISH---HARFRSTMVS 220
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 221 GGSRIRPQEDSLNMPVDMVVGTPGRILDHI-----KDGNMVYGDIKYLVLDEADTMFDQG 275
Query: 258 F 258
F
Sbjct: 276 F 276
>gi|258573243|ref|XP_002540803.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901069|gb|EEP75470.1| predicted protein [Uncinocarpus reesii 1704]
Length = 937
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++++ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 92 FQAMGLNATLLKSITRKGFSVPTPIQRKTIPLVLDEQDVVGMARTGSGKTAAFVIPMIEK 151
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K RA L++ P+ L Q +++ L G L + V + G
Sbjct: 152 L--------KSHSSK--IGSRA--LIMSPSRELALQTLKVVKELG--RGTDL-KCVLLVG 196
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ G PD+I++TP L+ N+D + +KYVVFDEAD L
Sbjct: 197 GDSLEEQFGYMAGNPDIIIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 247
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ +F K L +G++ P + +D S PDLQ+
Sbjct: 248 EMGFAAQLTEILHGLPQSRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQN 307
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + IL+ +G + L R + NF+ + V TD AAR
Sbjct: 374 TIVFVATKHHVDYIASILRESGFAVAYAYGSLDQTARKIQVNNFRAGISNILVVTDVAAR 433
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + A F+HRVGRTARAG+ G SL +S+
Sbjct: 434 GIDIPVLANVINYDFPSQAKIFVHRVGRTARAGRKGWSYSLVRDSD 479
>gi|359419518|ref|ZP_09211469.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
gi|358244479|dbj|GAB09538.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia araii NBRC
100433]
Length = 569
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 102/188 (54%), Gaps = 26/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+ DR+ RAL++ G+ PS +QAA++ P+++G+DVV A+TG+GKT ++ +P++
Sbjct: 8 SFDDLGIDDRVRRALDDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILS 67
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L T S ++P +LVL P L QV +A P +R + +
Sbjct: 68 RLDT---------SARKPQ-----ALVLAPTRELALQVAEAFGRYAAHI--PELRVLPIY 111
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ + + VIV TP +++++D + + ++++V DEAD +L F
Sbjct: 112 GGQSYGVQLSGLRRGAQVIVGTPGRVIDHLD----KGTLDISELEFLVLDEADEMLTMGF 167
Query: 259 QNQVIRLI 266
V R++
Sbjct: 168 AEDVERIL 175
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 10/207 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + SKQ +AT+P K G + ++ D ++ + +K
Sbjct: 169 EDVERILADTPDSKQVALFSATMP----KAIGRLAQKYLHDPAEVTVKSKTSTAQNITQK 224
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+++V+ ++DAL V E +F +VF T A + + L+ G+ + D
Sbjct: 225 YLQVSHQRKLDALTR-VLEVEQFDG----MIVFVRTKSATEELAEKLRARGLSAMAINGD 279
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ +R +T+ +E + V TD AARG+D+ +SHV+ D ++HR+GRT R
Sbjct: 280 MVQAQRERTINQLKEGSLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGR 339
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG+ G + R L+ I +A +
Sbjct: 340 AGRSGTALLFVSPRERHLLRAIEKATR 366
>gi|302818592|ref|XP_002990969.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
gi|300141300|gb|EFJ08013.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
Length = 421
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 6/187 (3%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P ++ AG L++ D +++ + R++++ I V + + D L
Sbjct: 211 RQTLMFSATFPKKIQRLAGEFLRK---DYVFLAIGEVGSSTSRIEQEVIFVQRNQKYDCL 267
Query: 411 IEAVKERLEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+ + G + + +T+VF T + L++ G H D + EER + L
Sbjct: 268 GMVIDRQQMHGTKNNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAIHGDKTQEERRRALK 327
Query: 469 NFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+F+ + V T+ A+RGIDIP+VSHVI D T+ D++HR+GRT RAG+ G T+L+
Sbjct: 328 SFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTNIDDYVHRIGRTGRAGKRGFATALF 387
Query: 528 TESNRDL 534
+ + L
Sbjct: 388 CDGDAPL 394
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L L + F P++VQ ++ L+ +D++ A+TGSGKT ++ P+IE
Sbjct: 14 SFDDLSLHSILNDNIRQCRFTVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIE 73
Query: 145 KLCTALGDSENSNSDKEPTPPRAP--------SLVLCPNVVLCEQV-----VRMANALSA 191
+ +EP P R +L+L P L +Q + ++ + A
Sbjct: 74 GIL------------REPVPGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFIA 121
Query: 192 DNGEPLVRAVAVCGGQG------WP--IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
D V G W +G D++V+TP L + +D R M ++ +K
Sbjct: 122 DEAFKFCYQTGVRVGVVYGGTRLWSDNLGGVDILVATPGRLNDLLD----REMVELQKLK 177
Query: 244 YVVFDEADMLLCGSFQNQVIRLIN 267
Y+ DEAD +L F+ Q+ R++
Sbjct: 178 YLTLDEADRMLDMGFEPQIRRIVE 201
>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
Length = 611
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E+ + + L+ A +E E ++ S T+VF T ++ +L G H D +
Sbjct: 391 EIDKRSHLMDLLHAQRE-TEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRT 449
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ER L +F+ K + V TD AARG+DIP+V+HV+ D D++HR+GRT RAG
Sbjct: 450 QQEREMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG 509
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKL 544
GL T+ + E++ R L D ++ A ++
Sbjct: 510 NTGLATAFFNENSMSLARPLADLMQEANQV 539
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L + + + + + +P+ VQ ++ +L+G+D++ A+TGSGKT ++ P+I
Sbjct: 156 TFADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIA 215
Query: 145 KLC-TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + P +L+L P L Q+ A S G +V
Sbjct: 216 GIMREQYVQRPHGGRTMYPL-----ALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGG 270
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
PI + D++V+TP L++ ++ + R ++ +R Y+ DEAD +L
Sbjct: 271 A-----PINQQLRELERGVDILVATPGRLVDLLE-RARVSLQMIR---YLALDEADRMLD 321
Query: 256 GSFQNQVIRLI 266
F+ Q+ +++
Sbjct: 322 MGFEPQIRKIV 332
>gi|359497578|ref|XP_003635571.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial
[Vitis vinifera]
Length = 301
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 38/195 (19%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LGL LIRAL G +P+ +Q ++ +L GKDVV A+TGSGKT +YL+PL++
Sbjct: 25 TFEELGLEPSLIRALIKKGIEKPTPIQEVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL +SE+ N APS VL P LC+QV +L + +
Sbjct: 85 KL---FCESESRNK-------LAPSAFVLVPTRELCQQVYSEVLSL-----------IEL 123
Query: 204 CGGQGWPI----------------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
C GQ + G PD++VSTP + + + + ++ +V
Sbjct: 124 CRGQLKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASIIESLEILVL 183
Query: 248 DEADMLLCGSFQNQV 262
DEAD+LL +++ +
Sbjct: 184 DEADLLLSYGYEDDL 198
>gi|387824537|ref|YP_005824008.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
Length = 445
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + +S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSPEIKNLANDFLN----NPQSVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ T+++ALI +K++ + + +VF+ T +++ L AGI H +
Sbjct: 223 YTLDKSTKINALISLIKDQ-----DLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ K V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSKEINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQDGLAISLVS 348
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ V G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVVFG 109
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNALKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|405945579|gb|EKC17390.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 446
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138
++D +++ +GL DRL++A+ G+ P+ +Q ++ L GKD++ A TGSGKT ++
Sbjct: 1 MSEDTLSFHEMGLDDRLLKAISQLGWSEPTPIQEKAIPLALDGKDILARARTGSGKTAAF 60
Query: 139 LVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+P+I+K+ TA S K +LVL P LC Q R L++ V
Sbjct: 61 CIPVIQKILTAKQTSSTEQCVK--------ALVLTPTKELCHQAYRNLMDLTSSCSRE-V 111
Query: 199 RAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
+ + + P + KPD+IV+TP L +I + ++ + ++ ++ DEAD+
Sbjct: 112 KVLDISPQVPLPTQKPMLMEKPDIIVATPTRALAHI---KAGNLDLRQSLELLIIDEADL 168
Query: 253 LLCGSFQNQV 262
L +++ V
Sbjct: 169 LFSFGYEDDV 178
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 30/146 (20%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD--- 481
++++F N V+ Y + L+ I + +L + R + F E + + +D
Sbjct: 257 KSIIFVNEVNRCYKLKLFLEQFAIPACVLNSELPVNSRCHIVNQFNEGLYDIIIASDENL 316
Query: 482 --------------------------AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
+RGID NVS+VI DF ++HRVGRTA
Sbjct: 317 LMDPKTKPLDPEKKKDKKRKKKDKEYGVSRGIDFQNVSNVINFDFPCDVDTYIHRVGRTA 376
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRA 541
R G S + + DL+ + +
Sbjct: 377 RGDNQGSALSFVSVKDMDLLVEVEKT 402
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 34/190 (17%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
VT+ LGLSD++++AL + G+ +PS +QAA++ P+L+G+DVV A+TG+GKT ++ +P+
Sbjct: 13 EVTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPI 72
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLV 198
+ +L D T P+A LVL P + +CE R A + V
Sbjct: 73 LSRL------------DLTQTTPQA--LVLAPTRELALQVCEAFERYAAHVKG------V 112
Query: 199 RAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
+ V GGQG+ + V+V TP ++++++ E +++V DEAD
Sbjct: 113 HVLPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSEL----RFLVLDEADE 168
Query: 253 LLCGSFQNQV 262
+L F V
Sbjct: 169 MLNMGFAEDV 178
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
K +AT+P ++ + L P + G N + ++++ V+ +VDAL
Sbjct: 189 KNVALFSATMPAQIRRISKKYLDD--PAEITVKGKTATASN--ITQRYLTVSYPQKVDAL 244
Query: 411 IEAVK-ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
++ E E +VF T + + + L+ G+ + D++ +R +T+
Sbjct: 245 TRILEVENFEG------MIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQ 298
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
+ K + V TD AARG+D+ +SHV+ D T ++HR+GRT RAG+ G S T
Sbjct: 299 LKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVT 358
Query: 529 ESNRDLVDTIRRAAKLGQPV 548
R L+ I +A + QP+
Sbjct: 359 PRERYLLKHIEKATR--QPL 376
>gi|339326701|ref|YP_004686394.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166858|gb|AEI77913.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 656
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL ++RAL + P+ VQA ++ L+G+D++++++TGSGKT ++++P I++
Sbjct: 60 FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119
Query: 146 LCTALGDSENSNSDK-------EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ + K P+P + LVL P L QV A A G L
Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAA----AKYGRNLR 175
Query: 199 RAV--AVCGGQGWP-----IGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
R V ++ GG +P + K PD++V+TP LL++ID R + ++ +VFDEA
Sbjct: 176 RIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRID----LSALQMLVFDEA 231
Query: 251 DMLLCGSFQNQVIRLIN 267
D +L F + + ++N
Sbjct: 232 DRMLDMGFADDIDAIVN 248
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D++ R +TL + V V T
Sbjct: 317 ATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVAT 376
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G +L ++
Sbjct: 377 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHND 427
>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV---FVC 479
+T ++F T + + LK++GI H D +R L +F K G+ V
Sbjct: 540 QTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDF--KSGITPILVA 597
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
TD A+RG+DIPNV+HVIQ D D+ HR+GRT RAG G+ TS Y +NR+L
Sbjct: 598 TDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYDRNNRNL 652
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L + L + G+ P+ VQ + L+G D++ A+TGSGKT ++LVP++
Sbjct: 293 SFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVH 352
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ G S + P ++++ P L Q+ L+ + V
Sbjct: 353 YILKN-GVSPAKDRISHPI-----AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVY 403
Query: 205 GGQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
GG +P + D++V+ P L + D R + VK+++ DEAD +L F+ Q+
Sbjct: 404 GGTPYPTRFENDILVACPGRLKDIFD----RNIVSFSCVKFLILDEADRMLEMGFEEQIE 459
Query: 264 RLI 266
L+
Sbjct: 460 YLV 462
>gi|71022233|ref|XP_761347.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
gi|74699940|sp|Q4P3W3.1|DBP10_USTMA RecName: Full=ATP-dependent RNA helicase DBP10
gi|46097655|gb|EAK82888.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
Length = 1154
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 43/204 (21%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLI 143
++S+GL L+R+L GF P+ +Q ++ ++S +DVV A TGSGKT +YL+PLI
Sbjct: 146 FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPPRDVVGMARTGSGKTLAYLIPLI 205
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR----MANALSADNGE---- 195
+L N PT SL+LCP+ L Q++R +A AD GE
Sbjct: 206 NRL----------NGRHSPTFG-IKSLILCPSRELAVQILRVGKEIARGWKADAGEGQDS 254
Query: 196 --PLVRAVAVCGGQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGV 242
+R + GG+ G PDV+++TP +L+ N+D ++ V
Sbjct: 255 RGEAIRWAIIVGGESLDEQFGIMSNNPDVVIATPGRMLHLTVEMNLD---------LKSV 305
Query: 243 KYVVFDEADMLLCGSFQNQVIRLI 266
+YVVFDEAD L F Q+ ++
Sbjct: 306 EYVVFDEADRLFEMGFAEQLEEML 329
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+T++F T V + +L T G C + L R + F+ + + + TD AA
Sbjct: 470 QTIIFCATKHHVEYLLLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIVTDVAA 529
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
RGID+P + HV+ DF F+HRVGRTARAG+ G S+ T +
Sbjct: 530 RGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAGRNGWAWSMCTNA 575
>gi|341615128|ref|ZP_08701997.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 460
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 5/202 (2%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R++ + + +Q +F +AT+P K ++ Q + +S R+++
Sbjct: 170 LRKINELTPKDRQTLFFSATMP----KQIKELVSQYCRNPVQVSVTPESTTAERIEQFLF 225
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V D + L + R E + R +VFA T V K L I H + S
Sbjct: 226 MVQQDEKQSLLELILSGRHEIPGKIERVLVFARTKHGCDRVVKKLAQVNIAANAIHGNKS 285
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R + L F+ K V V TD AARGIDIP VSHVI + ++HR+GRTARAG
Sbjct: 286 QPQRERALDEFKRAKTPVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAG 345
Query: 519 QYGLVTSLYTESNRDLVDTIRR 540
G+ + E R + IR+
Sbjct: 346 ADGIAIAFCAEDERQYLKDIRK 367
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 17/193 (8%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS +++AL+ G+ P+ +QA ++ PVL G+D++ A+TG+GKT ++++P I++
Sbjct: 4 FSDLGLSQPVLQALDLQGYKEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN---ALSADNGEPLVRAVA 202
L D++N K LVL P L Q+ + A AL+ + +V +
Sbjct: 64 ----LRDADNQTPFKS-----CRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTS 114
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
V + D++V+TP LL+ ID +R + V+ +V DEAD +L F +
Sbjct: 115 VNKDRNKLHRGTDILVATPGRLLDLID----QRAFTLDAVEILVLDEADQMLDLGFIH-A 169
Query: 263 IRLINMFRFDEKQ 275
+R IN ++Q
Sbjct: 170 LRKINELTPKDRQ 182
>gi|145488701|ref|XP_001430354.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397451|emb|CAK62956.1| unnamed protein product [Paramecium tetraurelia]
Length = 1133
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKE-RLEFGAETSRTMVFANTVDAVYAVTKILKT 446
H H L ++ T + + I KE + +F ++F N + + + + K
Sbjct: 901 HMHLENLSHDFVHCTTLDKSEPFIALYKECQTKFKGSI---IIFCNEITSCHFLEFFCKK 957
Query: 447 AGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAV 505
GI+ H DL R++ + F+ ++ V + TD ARG+D P V VI DF S
Sbjct: 958 NGIKTVSLHGDLPKGMRSQNVAEFRSQQCKVLITTDLGARGLDFPFVDAVINFDFPNSTS 1017
Query: 506 DFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D+LHR GR RAG+ G + SLY S + ++D +R+A + +P+
Sbjct: 1018 DYLHRAGRAGRAGKKGFIYSLYHNSEQSVIDELRKANEGERPI 1060
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVV--IAAETGSGKTHSYLVPLI 143
+K L +++ L+ G + VQ + S +D V + TG+GKT++YL+P++
Sbjct: 687 FKQYPLHPKILEILDTKGLHTATPVQDM----MFSCQDKVRLLIGPTGTGKTYAYLLPIL 742
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL + E + E PRA +V+ L EQV ++ + + +A+
Sbjct: 743 GKLKQE--EEEQNKILTEQNKPRA--IVVVSTKELAEQVEDVSQEFTKAMK---LSTIAL 795
Query: 204 CGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G Q + D++V+T L + R + ++ V++ V DE D LL S
Sbjct: 796 GKGTFKREQSYLQEGVDLVVTT----LERLQRHRSAQSIYLSRVQHYVVDEIDTLLDASM 851
Query: 259 QNQVIRLINMFR 270
Q+ + +L F+
Sbjct: 852 QDDLKKLATYFK 863
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis
NIH/UT8656]
Length = 480
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+ T+K LG+ D L A E+ G+ P+ +QA ++ L G+D++ AETGSGKT +++
Sbjct: 47 ANSPTTFKELGIIDSLCEACESLGYKAPTPIQAEAIPLALQGRDLIGLAETGSGKTAAFV 106
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ L DK P + SL+L P L Q+ AL + VR
Sbjct: 107 LPILQALM-----------DK---PQQLHSLILAPTRELAYQISEAVEALGSLIA---VR 149
Query: 200 AVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q +G KP VIV+TP LL++++ + + R +KY+V DEAD L
Sbjct: 150 CAVLVGGMDMITQAIALGKKPHVIVATPGRLLDHLENTKGFSL---RQLKYLVMDEADRL 206
Query: 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
L F + +++ + + ++ + + K + +SL+ P
Sbjct: 207 LDLDFGPILDKILKILPREGRKTYLFSATMSSKVESLQRASLSNP 251
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++F TV+ V+ +L+T G H LS + R L F+ K + V +D AARG
Sbjct: 296 IIFTRTVNEAQRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNLLVASDVAARG 355
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
+DIP+V VI D + ++HRVGRTARAG+ GL S T+ + +L
Sbjct: 356 LDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDVEL 403
>gi|365093472|ref|ZP_09330537.1| dead/deah box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363414352|gb|EHL21502.1| dead/deah box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 427
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 10/192 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
++ +RV +Q +F +AT P + A +LK + + + P ++++
Sbjct: 168 EELQRVLALLPAQRQNLFFSATFPATVQTLADGLLK----NPVRVEVPHTPGKEPAIEQR 223
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
I V + L VKE SR +VF T A V + L AGI +H
Sbjct: 224 AIAVDASRRTQLLRHLVKEH-----NWSRVLVFVATQYAAEHVAEKLYKAGIYATPFHGG 278
Query: 458 LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
LS R++ L F+ E+ V V TD AARGIDI + V+ D SAVD++HR+GRT R
Sbjct: 279 LSQGARSQVLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTGR 338
Query: 517 AGQYGLVTSLYT 528
AG+ G+ S T
Sbjct: 339 AGESGVAVSFVT 350
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS L A E +GF P+ +Q A++ +L G D++ AA+TGSGKT ++
Sbjct: 3 FASLGLSPALAHAAEKAGFVTPTPIQGAAIPAILQGADLLGAAQTGSGKTAAF------- 55
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
AL + P R +LVL P L QV + +L+ +PL A+ G
Sbjct: 56 ---ALPLLQQLQLSATGGPRRVRALVLVPTRELAAQVGEVLRSLAQHLLQPLKIAIVFGG 112
Query: 206 GQGWPI-----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
P G D++V+TP LL+ ++ R + V ++V DEAD LL F
Sbjct: 113 VSINPQMLGLRGGADIVVATPGRLLDLVEHNALR----LGAVAHLVLDEADRLLDLGFAE 168
Query: 261 QVIRLINMFRFDEKQL 276
++ R++ + + L
Sbjct: 169 ELQRVLALLPAQRQNL 184
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT-VDTQVDAL 410
Q I V AT+ K ++ + F + + LH + +I+++ + +++AL
Sbjct: 313 QTILVTATM----TKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEAL 368
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ ++ L A+ +R MVF NT+++ AV L I YH ++ E+R + L F
Sbjct: 369 LQVLEPSL---AKGNRVMVFCNTLNSSRAVDHFLAENQISTVNYHGEVPAEQRVENLQKF 425
Query: 471 QEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G
Sbjct: 426 KSDDGDCPTLVCTDLAARGLDL-DVDHVVMFDFPLNSIDYLHRTGRTARMG 475
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 20/181 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L LSD ++ A+ P+ +Q + VL GK VV+ + TGSGKT +Y++PL++
Sbjct: 122 SFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQ 181
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 182 LLRR---DEALLGLLMKPRRPRA--IVLCPTRELSEQVFRVAKSISH---HARFRSTMVS 233
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D+IV TP +L +I+ V G +KY+V DEAD +
Sbjct: 234 GGGRMRPQEDSLNSPIDMIVGTPGRILQHIEDG-----NMVYGDIKYLVLDEADTMFDRG 288
Query: 258 F 258
F
Sbjct: 289 F 289
>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 471
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 5/204 (2%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN-PRLKEKWI 399
R V +N Q + +AT+P + A L + P + + N + EK +
Sbjct: 216 REVMQNLPTPHQTLLFSATMPAEVESLAADYLNK--PVKVKVGAVSVPTANVAQHLEKLV 273
Query: 400 EVT-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ VD + L+E E +FG T+VF V ++L G+ +H
Sbjct: 274 DAQKVDRLCELLLEEKAEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGR 333
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +ER L +++ K V TD AARG+D+ ++HV+ D D++HRVGRT RA
Sbjct: 334 SQQEREAALSDYKNGKCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRVGRTGRA 393
Query: 518 GQYGLVTSLYTESNRDLVDTIRRA 541
G G TS YT+ + +V ++RA
Sbjct: 394 GMTGRATSFYTDRDSYIVAQVKRA 417
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ + L+ +++ + + +P+ +QA ++ +LSG+DV+ AETGSGKT ++ +P+I+
Sbjct: 47 SFEDMMLNAKILLDIRFHEYDKPTPIQAQAIPIILSGRDVLGCAETGSGKTAAFSIPMIQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ K P A +V+ P L +Q+ + A S + + V
Sbjct: 107 HCL-------EQDPIKRGDGPFA--IVMAPTRELAQQIEKEAKVFSRSSKG--FKTTIVV 155
Query: 205 GGQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + D V V+TP L++++ + V V+ DEAD +L F
Sbjct: 156 GGTNMSDQRSDLRQGVEVCVATPGRLIDHLHQGNTN----LGRVSLVILDEADRMLDMGF 211
Query: 259 QNQV 262
+ Q+
Sbjct: 212 EPQI 215
>gi|406865244|gb|EKD18286.1| putative ATP-dependent RNA helicase dbp10 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1090
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 39/235 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ VL KDVV A TGSGKT ++++P+IE+
Sbjct: 215 FQAMGLNSHLLKAISRKGFSVPTPIQRKTIPLVLDHKDVVGMARTGSGKTAAFVIPMIER 274
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K A ++++ P+ L Q +++ S ++ V + G
Sbjct: 275 L--------KSHSVKVG----ARAIIMSPSRELALQTLKVVKEFSRGTD---LKCVLLVG 319
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G G+ G PD++++TP L+ + M + VKYVVFDEAD L F
Sbjct: 320 GDSLEEQFGFMAGNPDIVIATPGRFLH-----LQVEMSLDLSSVKYVVFDEADRLFEMGF 374
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 375 AAQLTEILHALPTSRQTLLFSATLPKSLVEFARAGLQEPTLVRLDAESKVSPDLQ 429
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++FA T V +T +L+ +G + L R + + +F+ + + V TD AAR
Sbjct: 490 TIIFAATKHHVDYITSLLRLSGFAVSHAYGSLDQTARNQQVEDFRTGRSNILVVTDVAAR 549
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF F+HRVGRTARAG+ G SL +++
Sbjct: 550 GIDIPVLANVINYDFPPQPKIFVHRVGRTARAGKRGWSYSLVRDTD 595
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 31/235 (13%)
Query: 70 DKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
++N S TF ++ L L LI+A N F +P+ +Q+ S+ P L G D++ A+
Sbjct: 66 EENTSEKTF-----TSFNELDLVPELIQACHNLNFSKPTPIQSKSIPPALEGHDIIGLAQ 120
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT ++ +P++ KL D++P + +L P L +Q+ ++L
Sbjct: 121 TGSGKTAAFAIPILNKLW----------EDQQP----YYACILAPTRELAQQIKETFDSL 166
Query: 190 SADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G VR+V + GG + KP +I++TP L+++++ + + R +K
Sbjct: 167 GSLMG---VRSVCIVGGMNMMDQSRELMRKPHIIIATPGRLMDHLENTKGFSL---RKLK 220
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
++V DEAD LL F + R++ + ++ + + K ++ +SLT P
Sbjct: 221 FLVMDEADRLLDMEFGPVLDRILKIIPTQDRTTYLFSATMTSKIEKLQRASLTNP 275
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 453 CYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H DL+ +R L F+ K + V D AARG+DIP+V VI D + ++HRV
Sbjct: 344 ALHGDLNQNQRTGALDLFKAGKRQILVAIDVAARGLDIPSVDIVINYDIPVDSKSYIHRV 403
Query: 512 GRTARAGQYGLVTSLYTESNRDLV 535
GRTARAG+ G SL ++ + +L+
Sbjct: 404 GRTARAGRSGKSISLVSQYDLELI 427
>gi|365760745|gb|EHN02442.1| Dbp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840222|gb|EJT43125.1| DBP3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 516
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 21/202 (10%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP----DADWISGN-----YLHFHNPR 393
+R+ +Q + AT P ++ A +K + D ++ N + +PR
Sbjct: 273 IRETDASKRQTLMFTATWPKEVRELASTFMKNPIKVSIGNTDQLTANKKITQIVEVVDPR 332
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
KE+ L+E +K+ + + ++FA V + LK G +
Sbjct: 333 GKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEATRVERNLKYNGYDVAA 381
Query: 454 YHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DLS ++R + L F+ K + + TD AARG+DIPNV VI F + D++HR+G
Sbjct: 382 IHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 441
Query: 513 RTARAGQYGLVTSLYTESNRDL 534
RT RAGQ G +L+TE + L
Sbjct: 442 RTGRAGQTGTAHTLFTEQEKHL 463
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F P+ +QA + +LSGKDVV AETGSGKT ++ VP I L G
Sbjct: 121 EISKFPTPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQGKR------ 174
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + +
Sbjct: 175 ------GIQVLVISPTRELASQIYDNLIILTDKVG---MQCCCVYGGVPKDEQRNQLKRS 225
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+V+TP LL D + ++ + V Y+V DEAD +L F+ + +I
Sbjct: 226 QVVVATPGRLL---DLLQEGSVDLSQ-VNYLVLDEADRMLEKGFEEDIRNII 273
>gi|342184980|emb|CCC94462.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 594
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 8/143 (5%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W+E Q AL ++E + +VF + + L+ G+ C H
Sbjct: 350 RWVEDNEKRQ--ALFSLLRENV-----GKLVLVFVEKRRDADNLERFLRNNGLGCASIHG 402
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D +ER K L F+ + + V TD A+RG+DIPNV VIQ D ++ D++HR+GRT
Sbjct: 403 DRVQQEREKALRMFKSGECQILVATDVASRGLDIPNVGLVIQYDLPSNIDDYVHRIGRTG 462
Query: 516 RAGQYGLVTSLYTESNRDLVDTI 538
RAG+ G+ S + E NR++VD +
Sbjct: 463 RAGKVGVAISFFNEKNRNIVDDL 485
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 18/188 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ + +S L+ ++ G+ +P+ VQ+ + LS +D++ A+TGSGKT SYL+P I
Sbjct: 117 SFVEMKISPTLLENVKRCGYTKPTPVQSLGIPTALSHRDLMACAQTGSGKTASYLIPAIN 176
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ + + S+ ++ + P+ LVL P L Q+ A + VR V V
Sbjct: 177 EILLNMSNRPQSSPNQ--SCPQV--LVLAPTRELSLQIYGEARKFTFRTH---VRCVVVY 229
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + + ++V+TP L++ R + F +++++ DEAD +L F
Sbjct: 230 GGADPRHQIQELSRGCSLLVATPGRLMDMFS---RGYVRFC-SIRFLILDEADRMLDMGF 285
Query: 259 QNQVIRLI 266
+ Q IR+I
Sbjct: 286 EPQ-IRMI 292
>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 646
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL ++RAL + P+ VQA ++ L+G+D++++++TGSGKT ++++P I++
Sbjct: 60 FATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQR 119
Query: 146 LCTALGDSENSNSDK-------EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ + K P+P + LVL P L QV A A G L
Sbjct: 120 ISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAA----AKYGRNLR 175
Query: 199 RAV--AVCGGQGWP-----IGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
R V ++ GG +P + K PD++V+TP LL++ID R + ++ +VFDEA
Sbjct: 176 RIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHIDAGRID----LSALQMLVFDEA 231
Query: 251 DMLLCGSFQNQVIRLIN 267
D +L F + + ++N
Sbjct: 232 DRMLDMGFADDIDAIVN 248
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D++ R +TL + V V T
Sbjct: 317 ATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVAT 376
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G +L ++
Sbjct: 377 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHND 427
>gi|281207672|gb|EFA81852.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 729
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 21/188 (11%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D + T++S+ L R+ R++ GF P+++Q+ ++ L GKD++ A TGSGKT +Y V
Sbjct: 19 DQDTTFESMCLDMRITRSIRKMGFDHPTLIQSKAIPLALQGKDILAKARTGSGKTAAYSV 78
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++K+ + +N++K+ RA +VL P LCEQV N +
Sbjct: 79 PIVQKILMS-----KANNNKKCI--RA--VVLVPTRELCEQV---KNHFLQICFYTQLSV 126
Query: 201 VAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + G Q K PD+I+STP L+N++ + ++ ++ +V DEAD++L
Sbjct: 127 VQLAGDQSESEQKGLLRDIPDIIISTPTRLVNHL---KSGSIQLESSLEMLVIDEADLVL 183
Query: 255 CGSFQNQV 262
+Q +
Sbjct: 184 SYGYQEDI 191
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+RGID NV V+ DF + +++HR+GRTAR G+ S T N DL+ +++
Sbjct: 479 GVSRGIDFRNVDIVVNFDFPRTVKNYVHRIGRTARGSNKGIALSFITPDNDDLLHEVQK 537
>gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 445
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ K + Q + +AT ++ + + +S + ++ ++ +K
Sbjct: 167 DLKRIHKLLPKKLQTLMFSATF----SPEITSLANEFLDNPQSVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ T+++ALI +K++ + + +VF+ T +++ L AGI H +
Sbjct: 223 YTLDKSTKINALISLIKDQ-----DLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ K V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSKDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQDGLAISLVS 348
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ V G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVVFG 109
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNALKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + R+
Sbjct: 166 NDLKRI 171
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 40/244 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+TWK LG+ D L + E+ + P+ +Q ++ L GKDV+ AETGSGKT ++ +P++
Sbjct: 18 LTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDVIGLAETGSGKTAAFAIPIL 77
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L EN P R +L+L P L Q+ AL + G V+ +
Sbjct: 78 QALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCAVI 120
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 121 VGGMDMMSQALLLAKKPHILIATPGRLVDHLENTKGFNL---RSLKFLVMDEADRILNMD 177
Query: 258 FQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ 307
F+ +V +++ + + K++ ++ + + P++++ S+ Q E LQ
Sbjct: 178 FEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEKLQ 233
Query: 308 DEYI 311
YI
Sbjct: 234 QYYI 237
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 261 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 320
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 374
>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
Length = 567
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T ++ L++ G H D + +ER L +F+ + V TD A+R
Sbjct: 330 TLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQERESALKSFKSGTTPIMVATDVASR 389
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+D+PNV+HVI D S D++HR+GRT RAG+ G+ T+ +TESN L
Sbjct: 390 GLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGIATAFFTESNHPL 438
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 27/207 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+++ GL++ ++R + G+ P+ VQ ++ V++G+D++ A+TGSGKT ++ +P++
Sbjct: 58 FEAAGLAEAVLRNVARCGYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 117
Query: 146 LCT--------ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
L + S PRA LVL P L Q+ A S G
Sbjct: 118 LVVPPAGGGSGYGYGRRDRGSFDRVAKPRA--LVLAPTRELAAQINEEARKFSFQTG--- 172
Query: 198 VRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
+R V GG P+ D++V+TP L++ ++ R R+ + G+KY+V DE
Sbjct: 173 LRVVVAYGGT--PMYNQLRDLERGVDLLVATPGRLVDMVE---RSRIS-LEGIKYLVMDE 226
Query: 250 ADMLLCGSFQNQVIRLINMFRFDEKQL 276
AD +L F+ Q+ ++++M +K +
Sbjct: 227 ADRMLDMGFEPQIRKIVDMMNMPKKSV 253
>gi|121699888|ref|XP_001268209.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|134034061|sp|A1CTZ6.1|DBP10_ASPCL RecName: Full=ATP-dependent RNA helicase dbp10
gi|119396351|gb|EAW06783.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 935
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GLS L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+IEK
Sbjct: 91 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEK 150
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L ++ V + G
Sbjct: 151 LRS------------HSTKVGARGLILSPSRELALQTLKVVKELGKGTD---LKCVLLVG 195
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 196 GDSLEEQFTMMAGNPDIVIATPGRFLHLKVEMNLD---------LYSIRYVVFDEADRLF 246
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ + K L +G+++P + +D S PDLQ+
Sbjct: 247 EMGFAAQLTEILHGLPPNRQTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQN 306
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VFA T V + +L AG + L R + NF+ + V TD AAR
Sbjct: 376 TIVFAATKHHVDYLYSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAAR 435
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAG+ G SL +++
Sbjct: 436 GIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDAD 481
>gi|255727326|ref|XP_002548589.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
gi|240134513|gb|EER34068.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
Length = 605
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 20/202 (9%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAET 130
N ++ + + D++ TW S L RL++A++ GF P+++Q++++ L K D++ A T
Sbjct: 38 NTAASSAYLDEDTTWDSFNLDPRLLQAIDQLGFANPTLIQSSAIPLALEEKRDIIAKAST 97
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR-MANAL 189
GSGKT +Y +P++ L T GDSE S+VL P L QV + + L
Sbjct: 98 GSGKTAAYSIPIVNNLLTD-GDSEG-----------IKSIVLVPTRELSNQVFQFIEKLL 145
Query: 190 SADNGEPLVRAVAVCGG----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
S N + V ++ + KPD+I+STPA L+ I K + ++ + VK +
Sbjct: 146 SFSNNKINVLNLSSNYSDQVLNSLLVNKPDIIISTPAKLI-QILEKNEKNVD-LSTVKNL 203
Query: 246 VFDEADMLLCGSFQNQVIRLIN 267
DE D++L + + + +L N
Sbjct: 204 TIDEVDLVLSFGYMDDLKKLEN 225
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 40/141 (28%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD--- 481
+T+VF N +D Y + L+ GI C + +L + R + F + + + TD
Sbjct: 300 KTIVFVNNIDRGYRLKLFLEQFGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDETN 359
Query: 482 ------------------------------------AAARGIDIPNVSHVIQADFATSAV 505
+RG+D NV+ V+ D TS+
Sbjct: 360 ELNEEKDEDDIDEDQADGEPAAKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSK 419
Query: 506 DFLHRVGRTARAGQYGLVTSL 526
++HR+GRTARAG+ G+ S
Sbjct: 420 AYIHRIGRTARAGKAGMALSF 440
>gi|412985561|emb|CCO19007.1| predicted protein [Bathycoccus prasinos]
Length = 585
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
+++ K ++Q +F +AT P +K A + + G N + +
Sbjct: 331 KKIIKLCPHARQTLFYSATWPKAVQKIAANFTTKPIQVSIGEGGTGKLTANKMITQIVQV 390
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459
T D + D ++A+ E LE E +VF T + + L+ +GI C H D
Sbjct: 391 CTEDEKFDNCMQAMGE-LE---EKDTCIVFCGTKRRCDFLDRKLRQSGIHSCGAIHGDKD 446
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER K+L NF++ +G V V TD AARG+DIP V+ V+ DF + D++HR+GRT RAG
Sbjct: 447 QHEREKSLDNFRKGRGNVLVATDVAARGLDIPGVAMVLIYDFPGAVEDYVHRIGRTGRAG 506
Query: 519 QYGLVTSLYTESN----RDLVDTIRRA 541
+ G+ +L+T + R+LV + A
Sbjct: 507 KTGIAHTLFTREDSQQARELVQIMEGA 533
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
++ AL+ G+ +P+ +QA S L+G+D+V A+TGSGKT S+L+P + ++ G +
Sbjct: 154 IVAALKKQGYEKPTPIQAFSWTIALTGRDIVAIAKTGSGKTCSFLLPALTRIKKNGGPQK 213
Query: 155 NS-----NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA--VAVCGG- 206
N +P + S+VL P L Q+ P V+A V + GG
Sbjct: 214 APEMKLVNGRWKPGAVKPTSIVLAPTRELAIQINDECAKFC-----PAVKAKCVVLYGGA 268
Query: 207 -QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSFQN 260
+G + G D++V+TP + + +DP YVV DEAD +L F+
Sbjct: 269 AKGDQLRALRGGADIVVATPGRINDFLDPPPGFSAPVSASAATYVVLDEADRMLDMGFEP 328
Query: 261 QVIRLINM 268
Q+ ++I +
Sbjct: 329 QIKKIIKL 336
>gi|350629908|gb|EHA18281.1| hypothetical protein ASPNIDRAFT_38116 [Aspergillus niger ATCC 1015]
Length = 932
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ V+ +DVV A TGSGKT ++++P+I+K
Sbjct: 92 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVVMEDQDVVGMARTGSGKTAAFVIPMIQK 151
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L ++AV + G
Sbjct: 152 LKS------------HSTQVGARGLILSPSRELALQTLKVVKELGKGTD---LKAVLLVG 196
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 197 GDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 247
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ +F K L +G+++P + +D S PDLQ+
Sbjct: 248 EMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQN 307
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++FA T V + +L AG + L R + NF+ + V TD AAR
Sbjct: 377 TIIFAATKHHVDYLYSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAAR 436
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + A F+HRVGRTARAG+ G SL +S+
Sbjct: 437 GIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSD 482
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K KQ +F +AT+P + + KQ D I N + +
Sbjct: 167 DIERIFKMTPPKKQTLFFSATMPPEITR----LTKQFLRDPVRIEVARPATTNANITQLL 222
Query: 399 IEV-TVDTQ-----VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
++V + D + + ALIE K ++E G +VF N V V K LK G +
Sbjct: 223 VKVPSSDPKAKRLALRALIE--KAQIETG------IVFCNRKTEVDIVAKSLKVHGYDAA 274
Query: 453 CYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H DL +R KTL +F+ + V +D AARG+DIP VSHV D A D++HR+
Sbjct: 275 PIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRI 334
Query: 512 GRTARAGQYGLVTSLYTESN 531
GRT RAG+ G+ L T ++
Sbjct: 335 GRTGRAGRTGITYMLVTPAD 354
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS ++A+ ++G+ + +QA ++ L+G+DV+ A+TG+GKT ++ +PLI+K
Sbjct: 4 FSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC- 204
L + + PRA LV+ P L +QV + G L A+ +
Sbjct: 64 LQSGRAKARM---------PRA--LVIAPTRELADQVASSFEKYA--KGTKLSWALLIGG 110
Query: 205 ---GGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G Q + + DV+++TP LL++ + R + GV+++V DEAD +L F
Sbjct: 111 VSFGDQEKKLDRGVDVLIATPGRLLDHFE----RGKLLMTGVQFLVVDEADRMLDMGFIP 166
Query: 261 QVIRLINM 268
+ R+ M
Sbjct: 167 DIERIFKM 174
>gi|242803555|ref|XP_002484198.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
gi|218717543|gb|EED16964.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
Length = 945
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ +L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 98 FQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVILDDQDVVGMARTGSGKTAAFVIPMIEK 157
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + G L+L P+ L Q +++ L G L +AV + G
Sbjct: 158 LKSHSGKVG------------VRGLILSPSRELALQTLKVVKELG--RGTDL-KAVLLVG 202
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G +G PD++++TP L+ N+D + +KYVVFDEAD L
Sbjct: 203 GDSLEEQFSLMVGNPDIVIATPGRFLHLKVEMNLD---------LSSIKYVVFDEADRLF 253
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ +F K L +G++ P + +D PDLQ+
Sbjct: 254 EMGFAAQLTEILHGLPATRQTLLFSATLPKSLVEFARAGLQDPSLIRLDTEGKISPDLQN 313
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIEC-YCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
T++FA T V + IL+ AG Y Y SL++ A+ + + + G + V TD
Sbjct: 382 TIIFAATKHHVDYIVSILREAGFAVSYAYG---SLDQTARNIQVQRFRNGATHILVVTDV 438
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTI 538
AARGIDIP +++VI DF + F+HRVGRTARAGQ G SL +++ DL +
Sbjct: 439 AARGIDIPILANVINYDFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFL 498
Query: 539 RRAAKLGQP 547
R LG+P
Sbjct: 499 GRKLVLGRP 507
>gi|383785235|ref|YP_005469805.1| ATP-dependent RNA helicase [Leptospirillum ferrooxidans C2-3]
gi|383084148|dbj|BAM07675.1| putative ATP-dependent RNA helicase [Leptospirillum ferrooxidans
C2-3]
Length = 467
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + + + +Q + +ATLP ++ A + + DA I N +P+++++
Sbjct: 191 DIQAIVAGLPQDRQSLLFSATLPPRIQELARSFQR----DAAIIRLNSSEPSSPQIEQEI 246
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ V+ +Q +++ + + ++ T +T+VF T ++ L G H D
Sbjct: 247 VTVSHGSQKLGILKTILDSVK--NHTGQTIVFTRTKRGAEELSISLSGEGYSTDALHGDK 304
Query: 459 SLEERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R + L F+ KG + V TD AARG+DI ++HVI D +A D++HR+GRT R
Sbjct: 305 SQHVRNRVLAKFR-KGDLKILVATDVAARGLDIEGITHVINYDLPQTAEDYVHRIGRTGR 363
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AG+ G S Y ++ D + +I R G+P+
Sbjct: 364 AGRTGKAISFYHPADTDTMRSIERMT--GEPI 393
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D VT+ LGL+ +++AL + P+ +QAA++ ++ G+D++ A TG+GKT +L+P
Sbjct: 24 DQVTFADLGLAPEILKALNDIEHFVPTPIQAATIPLIIEGRDILGIARTGTGKTGGFLLP 83
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+ ++ + L+L P L Q A + S R +
Sbjct: 84 ALHRIYQTRTAKQGFR-----------VLILSPTRELANQTFSAAMSYSKYTRS---RQI 129
Query: 202 AVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GG Q + KP D+ V TP LL+++ RR + + V+ DEAD +L
Sbjct: 130 LLVGGTDLRRQEMSLRKPWDIAVVTPGRLLDHL---RRGNINLAH-ISMVIIDEADRMLD 185
Query: 256 GSF 258
F
Sbjct: 186 MGF 188
>gi|156103037|ref|XP_001617211.1| DEAD/DEAH box helicase [Plasmodium vivax Sal-1]
gi|148806085|gb|EDL47484.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
Length = 923
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N +K+ I + + + + L++ + E T++F T + + L +
Sbjct: 595 NEYIKQNLIYIEEENKCNYLLKLLSEN-----NNGLTIIFVETKRKADIIERFLNNQKLN 649
Query: 451 CYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C H D S +ER + L F+ + V TD AARG+DI N+ HVI D ++ D++H
Sbjct: 650 AVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINFDLPSNIDDYIH 709
Query: 510 RVGRTARAGQYGLVTSLYTESNRDL 534
R+GRT RAG G+ TS + NR++
Sbjct: 710 RIGRTGRAGNIGIATSFVNDDNRNI 734
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 29/285 (10%)
Query: 19 PKLLSKFNASSSCLSNSAPSSFYPLRVR--FLRLNQWKGRPFRGFAAAAAVVSDKNGSSD 76
P +N + +N +YP + + + KG F + + + N SD
Sbjct: 275 PAFGRNYNIPKTAWANRDNRRYYPEKEEEIYSNVKSEKGVNFDMYDSIPVEIKGYN--SD 332
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
DN L L + L+ ++ + + + +Q S+ +++ D++ A+TGSGKT
Sbjct: 333 NIIPIDNFDDVGLNLHEILLSNIKKVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTA 392
Query: 137 SYLVPLIEKLC-------TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
YL+P+I + T +++ S+S L+L P L Q+ +
Sbjct: 393 GYLLPIINHMLLNDPPKHTFYEENQKSSSYYYNRVCLPICLILAPTRELAVQIFYDSKKF 452
Query: 190 SADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G ++ V + GG D+IV+TP LN+I K + R+ F+
Sbjct: 453 CFETG---IKPVVLYGGSNIKTQLSNLDKGADIIVATPGR-LNDILEKGKIRL-FL--TS 505
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFD---EKQLSRMNESGVE 285
++V DEAD +L F Q IR I M+ +D + SRMN + +E
Sbjct: 506 FLVLDEADRMLDMGFSPQ-IRSI-MYDYDMPGNENDSRMNPNKME 548
>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660558|sp|Q6CT46.1|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
Length = 504
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++FA V + LK G + H DLS ++R + L F+ K + + TD AA
Sbjct: 342 KVLIFALYKKEASRVERNLKYNGYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAA 401
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK- 543
RG+DIPNV VI F + D++HR+GRT RAGQYG +L+TE + L +
Sbjct: 402 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVLNG 461
Query: 544 LGQPV 548
GQPV
Sbjct: 462 AGQPV 466
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 114/236 (48%), Gaps = 29/236 (12%)
Query: 68 VSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
VSD +GS+ + D + + D++ + E S F +P+ +QA S +L+GKDV+
Sbjct: 82 VSDPSGSNIVPYLD----FSQVSFIDQIQK--EISKFPKPTPIQAVSWPYLLAGKDVIGI 135
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187
AETGSGKT ++ VP I + T+ GD +S LV+ P L Q+
Sbjct: 136 AETGSGKTFAFGVPAINNIVTS-GDKSSS----------VKVLVISPTRELASQIYDNLI 184
Query: 188 ALSADNGEPLVRAVAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L+ G +R+ V GG Q + + V+V+TP LL+ I+ + V
Sbjct: 185 VLTDACG---LRSCCVYGGVPKDQQREDLRRSQVVVATPGRLLDLIEEGSVD----LSHV 237
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
Y+V DEAD +L F+ + ++I R +Q + ++ E+ +S +++P
Sbjct: 238 NYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEP 293
>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein [Neptuniibacter
caesariensis]
gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
[Oceanospirillum sp. MED92]
Length = 412
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 108/192 (56%), Gaps = 24/192 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ +K L LS +++A+EN+G+ S VQA ++ VLSGKD+++ A+TG+GKT ++ +P++
Sbjct: 1 MLFKDLCLSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L N++S +P +LVL P L +QV + G +R+
Sbjct: 61 DQLL-------NTSSQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTG---LRSAVA 110
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG G IG D++V+TP LL+ +++ +R +++++FDEAD +L
Sbjct: 111 YGGVG--IGPQIDQLKQGVDLLVATPGRLLDLC----KKKAANLREIEFLIFDEADRMLD 164
Query: 256 GSFQNQVIRLIN 267
F++++ +I+
Sbjct: 165 MGFRDEIKAVIS 176
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAA 483
++ MVF+ T + + L G+E H D + ++R L F+ +K V V TD A
Sbjct: 251 AQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQKLKVLVATDVA 310
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
ARGIDI + VI + A D++HR+GRT RAG G+ SL E L++ I
Sbjct: 311 ARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLLIEEENYLLEAI 365
>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 439
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 22/185 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LG++ ++RAL+ +G+ P+ VQA +V ++G+D++++A+TGSGKT ++L+P +
Sbjct: 1 MTFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
KL SE S + + PR LVL P L +QV + NAL +R +
Sbjct: 61 TKL------SERSTAKGQ--GPRV--LVLTPTRELAQQVEK--NALEYGKDLRWMRTACL 108
Query: 204 CGGQ--GWPI---GKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G+ I +P D+IV+TP L++++ R R++F R ++ +V DEAD +L
Sbjct: 109 VGGSSFGYQIRALSRPIDLIVATPGRLMDHM---RSGRIDFSR-LEMLVLDEADRMLDMG 164
Query: 258 FQNQV 262
F + +
Sbjct: 165 FIDDI 169
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F+ T + L G C H D+ R +TL + + + V V TD AARG
Sbjct: 249 VIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVLVATDVAARG 308
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
ID+P ++HV+ D A D++HR+GRT RAG+ G +L
Sbjct: 309 IDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITL 348
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 134/267 (50%), Gaps = 36/267 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ D+L+ A +N G+ P+ +Q S+ L GKD++ A+TGSGKT ++ +P+++
Sbjct: 10 TFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQ 69
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A E + + VL P L Q+ AL +D G V+ +
Sbjct: 70 SLLEA----------SEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIG---VKCAVLV 116
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +GK P ++V+TP L++++ + + R +KY+V DEAD LL F
Sbjct: 117 GGVDMVQQSIALGKRPHIVVATPGRLVDHLSNTKGFSL---RTLKYLVLDEADRLLNEDF 173
Query: 259 Q---NQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308
+ ++++++I F F K++ ++ + + P++++ +S + L+
Sbjct: 174 EKSLDEILKVIPRERRTFLFSATMTKKVKKLQRACLRNPVKIEAAS----KYSTVDTLKQ 229
Query: 309 EYISDEGNFEGDSDVEGLTEETKSGSI 335
EY ++ V LTE++ S S+
Sbjct: 230 EYRFIPAKYKDCYLVYILTEKSGSTSM 256
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +MVF T DA + +L+ G+ + ++ +R L F+ + + +CTD A
Sbjct: 253 STSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILICTDVA 312
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP+V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 313 SRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 358
>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
gi|74897202|sp|Q54VT4.1|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
Full=DEAD box protein 47
gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
Length = 546
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 27/222 (12%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
NVT++SLG+ ++I A GF +P +Q S+ L G+D++ A+TGSGKT ++++P+
Sbjct: 118 NVTFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPV 177
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
++KL A P L L P L Q+ NA+ + G V+
Sbjct: 178 LQKLLEA--------------PQGLFCLALAPTRELAYQIADQFNAIGSTIG---VKTCV 220
Query: 203 VCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + KP V+V +P +L++++ + + R +KY + DEAD L
Sbjct: 221 LVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNL---RSIKYFIMDEADRLFSA 277
Query: 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ +V ++ + E+ + + K ++ +SL P
Sbjct: 278 DFEEEVNNILKVIP-KERNTYLFSATMTSKVAKLQRASLVNP 318
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAAR 485
T++F +T + + +L+ G + D+ +R +L F Q + V TD AAR
Sbjct: 361 TIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAAR 420
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
G+DIP+V VI D T++ +++HRVGRTARAG G ++ T+ + ++ I K
Sbjct: 421 GLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIEFVLK 478
>gi|358397215|gb|EHK46590.1| hypothetical protein TRIATDRAFT_291734 [Trichoderma atroviride IMI
206040]
Length = 549
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + + +Q + +AT P + A L+ D+I N N R+ +
Sbjct: 310 RKIIEQIRPDRQTLMWSATWPKEVRALASDFLQ------DFIQVNIGSMELAANHRITQI 363
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VT + D +I+ +++ +E + ++ ++F T +T+ L+ G H D
Sbjct: 364 VEVVTEMEKRDRMIKHLEKVME--NKENKILIFVGTKRIADEITRFLRQDGWPALSIHGD 421
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT R
Sbjct: 422 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGR 481
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AGQ G +L+T N RDLV+ ++ A + P
Sbjct: 482 AGQNGTAITLFTTDNQKQARDLVNVLQEAKQQIDP 516
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 142 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 201
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ +P P L+L P L V++ +S +R V
Sbjct: 202 HI----------NAQPLLSPGDGPIVLILAPTRELA---VQIQQEISKFGRSSRIRNTCV 248
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 249 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 302
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 303 MGFEPQIRKIIEQIRPDRQTL 323
>gi|56461231|ref|YP_156512.1| ATP-dependent RNA helicase SrmB [Idiomarina loihiensis L2TR]
gi|56180241|gb|AAV82963.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 409
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 29/226 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ L DRLI L ++ +P+ VQ S+ L G+D++I+A TG+GKT ++L+P ++
Sbjct: 5 WEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQH 64
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++P P R LVL P L EQ+ A A G + +V V G
Sbjct: 65 LL--------DFPRQQPGPARI--LVLAPTRELAEQIHEQAKQFEAKTG---LTSVVVTG 111
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G + D++V+TP L++ ++ ++ + G+++++ DEAD +L F
Sbjct: 112 GINYGSQLSVLEKTHDILVATPGRLMDLLEAEQYN----LEGIEWLIIDEADRMLDMGFA 167
Query: 260 NQVIRLINMFRFDEKQL---SRMNESGVEKPLEMDNSSLTQPDLQD 302
V + R ++ L + +N SGV ++ LT+P+ D
Sbjct: 168 ATVKEMALQARHRQQSLLLSATLNSSGV---IKFSRELLTEPEYID 210
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKT---AGIECYCYHKDLSLEERAKTLVNFQEKGGV-F 477
A R VF T + V + L++ G + D+ +R + + ++ +
Sbjct: 244 AHPGRQFVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTEITL 303
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
V TD AARG+D+ +++ V+ D A +LHR+GRTAR GQ G SL + L+
Sbjct: 304 VATDIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAVSLVEAHDALLLGR 363
Query: 538 IRR 540
+ R
Sbjct: 364 VER 366
>gi|347534130|ref|YP_004840800.1| DEAD/DEAH box helicase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504186|gb|AEN98868.1| DEAD-box ATP-dependent RNA helicase cshA [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 505
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKT 135
D ++ +K LGLSD L++A+ ++G+ P+ +Q ++ L G+DV+ A+TG+GKT
Sbjct: 7 DVSIGGTHLNFKDLGLSDSLLKAVADNGYAEPTAIQTETIPLTLKGEDVIGQAQTGTGKT 66
Query: 136 HSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195
++ +P+++ + + P +LV+ P L Q + L G
Sbjct: 67 AAFALPILQGI--------------DVNDPNVQALVISPTRELAIQTQKEIQKLGRGEG- 111
Query: 196 PLVRAVAVCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
VRA V GG Q + + KP +IV TP LL++I +RR + VK++V DE
Sbjct: 112 --VRAQVVYGGSDIRKQIYDLKKKPQIIVGTPGRLLDHI----KRRTLKLEHVKFLVLDE 165
Query: 250 ADMLLCGSFQNQVIRLI 266
AD +L F + +I
Sbjct: 166 ADEMLNMGFLEDIESII 182
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + KN +Q + +AT+P K+ V Q D I K K
Sbjct: 176 EDIESIIKNTPSDRQTMLFSATMPDPIKR----VGVQFMTDPKQI------------KVK 219
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAET--------SRTMVFANTVDAVYAVTKILKTAGI 449
E+T D VD VK+ +F T T+VF T V V K L G
Sbjct: 220 SKELTTDL-VDQYYVKVKDNEKFETMTRLFDVEQPKVTIVFCRTKRRVDEVAKGLIARGY 278
Query: 450 ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
+ H DL+ R + + F+ ++ V TD AARGID+ V+HV D ++
Sbjct: 279 KAAGLHGDLTQSRRTQIMNEFKRDQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYV 338
Query: 509 HRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
HR+GRT RAG +G + T + + + + K+
Sbjct: 339 HRIGRTGRAGHHGTSVTFVTPNEMSYLRLVEKLTKV 374
>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
Length = 924
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 23/187 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ + LS L+RA+ + F + +QAA++ P L G+D+V A+TGSGKT ++L+P++E+
Sbjct: 344 FTEMNLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLER 403
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ T P + LVL P L Q M L+ +R +CG
Sbjct: 404 LLY-----------RQKTNPASRVLVLSPTRELAVQCHAMGEKLAKFTD---IRMSLICG 449
Query: 206 G------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q PDVIV+TP L++++ +E G++ ++ DEAD LL F+
Sbjct: 450 GFSTKRQQAELRAHPDVIVATPGRLIDHLQNSPGFDLE---GIEVLIMDEADRLLEMGFK 506
Query: 260 NQVIRLI 266
+V +I
Sbjct: 507 EEVDEII 513
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++T+VF + + I G++ H DL+ +R ++L F+E + + TD A
Sbjct: 588 TKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLLATDLA 647
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+RG+DI V V+ AD + ++HRVGRTARAG+ G SL E R L+ I
Sbjct: 648 SRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEI 702
>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 407
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVEEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK+ LH PR + + W+ + D ++ L+ +K+
Sbjct: 196 EKFANDILKEPV---------ELHAEPPRSERRPITQWVHLADDAAHKLALLVHILKD-- 244
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
ET + ++F T + + ++ L+ AG+ C ++ +R +++ F E F
Sbjct: 245 ---PETQKAIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 31/224 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L+ L RAL GF RP+ +Q + P L G+D++ +A TG+GKT ++L+P ++
Sbjct: 4 SFDDFDLNPALNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R LVL P L QV A AL+A + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LVLTPTRELALQVTAHAKALAAHTN---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEKPLEMDNSSLTQP 298
F V R++ R+ + + + + +G+EK N L +P
Sbjct: 166 FIKDVNRIVEEARYRKHTMLFSATLEGAGLEK---FANDILKEP 206
>gi|71003417|ref|XP_756389.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
gi|46095767|gb|EAK81000.1| hypothetical protein UM00242.1 [Ustilago maydis 521]
Length = 957
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGG-----VFV 478
RT+VF N++D + +T +L + CY H L ++R K L F+ E+ G V +
Sbjct: 625 RTLVFVNSIDGIRRLTPLLTQLNVMCYPIHSQLQQKQRLKNLDRFRAFERCGQASNCVLL 684
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
TD AARG+DIP+V HV+ SA ++HR GRTARAG G+ +L + L +
Sbjct: 685 ATDVAARGLDIPSVEHVVHYQLPRSADTYVHRSGRTARAGSSGVSLALIEAKEKQLWTQL 744
Query: 539 RRA 541
RA
Sbjct: 745 CRA 747
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 75/272 (27%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQ-------------------------AASVGP--V 118
W L L L RAL + GF +P+ +Q +A++G
Sbjct: 243 WSHLALHSDLKRALLHKGFKQPTEIQRKAIPFALGLQQEATSSDDSEDTADSAAIGAPST 302
Query: 119 LSGKDVVIAAETGSGKTHSYLVP----LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP 174
+DVV ++TGSGKT +Y +P L E A+ S N+ + PP +L+LCP
Sbjct: 303 RRKRDVVGVSQTGSGKTLAYGLPILNYLFENAENAIASSCRRNAVDDLPPPLG-ALILCP 361
Query: 175 NVVLCEQV-------VRMANALS-ADNGEPLV---------RAVAVCGG----------- 206
L QV VR + +S D +P + + VCGG
Sbjct: 362 TRELALQVSSHLIDLVRASCIVSDIDVDQPEISHRKLLRRPQIAVVCGGMSEQKQRRLLE 421
Query: 207 ----QGWPIGKPDVIVSTPAAL--LNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSF- 258
QG D+IV+TP L + +D R ++ +++V DEAD M+ G F
Sbjct: 422 GRSRQGDRKAGVDIIVATPGRLWEMTRLDDHLAAR---IKQTRFLVLDEADRMVEVGHFA 478
Query: 259 -QNQVIRLINMF---RFDEKQLSRMNESGVEK 286
++ L+N R E Q + + SG +K
Sbjct: 479 EMEHILNLVNRSEAKRPSEGQDGQQHVSGSDK 510
>gi|365990195|ref|XP_003671927.1| hypothetical protein NDAI_0I01150 [Naumovozyma dairenensis CBS 421]
gi|343770701|emb|CCD26684.1| hypothetical protein NDAI_0I01150 [Naumovozyma dairenensis CBS 421]
Length = 523
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+R+ + +Q + AT P ++ A + + + P I N R+ + +EV
Sbjct: 280 IRETSPKGRQTLMFTATWPKEVRELASSFMNE--PVKVSIGNRDELTANKRITQ-IVEVI 336
Query: 403 VDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
+ D L++ +K+ + + ++FA V + LK G E H DLS E
Sbjct: 337 DPQRKDRKLLDLLKKYHSGPTKNDKVLIFALYKKEAARVERNLKYNGYEVAAIHGDLSQE 396
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R + L F+ K + + TD AARG+DIPNV VI F + D++HR+GRT RAGQ
Sbjct: 397 QRTRALGEFKAGKTNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQT 456
Query: 521 GLVTSLYTESNRDL 534
G +L+TE + L
Sbjct: 457 GTAHTLFTEHEKHL 470
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E + F +P+ +QA S +LSGKDV+ AETGSGKT ++ VP I+ L + NS
Sbjct: 122 EIAKFPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAIDYLVKTNQSNNKKNSG 181
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 182 G------IQVLVISPTRELASQIYDNLIILTEKVG---LQCCCVYGGVPKEAQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+V+TP LL+ I + VKY+V DEAD +L F+ + +I
Sbjct: 233 QVVVATPGRLLDLIQEGSVN----LSAVKYLVLDEADRMLEKGFEEDIKNII 280
>gi|391344138|ref|XP_003746360.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Metaseiulus occidentalis]
Length = 461
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 115/224 (51%), Gaps = 26/224 (11%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D T+K LG+ D L A E + PS +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 27 EDKTTFKELGVVDVLCEACEALKWRTPSKIQKEAIPVALQGRDIIGLAETGSGKTAAFAL 86
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L EN P R +L+L P L Q+ AL + G +++
Sbjct: 87 PILQALL------EN--------PARLFALILTPTRELAFQISEQFEALGSTIG---IKS 129
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP V+++TP L+++++ + + + ++Y+V DEAD +L
Sbjct: 130 AVIVGGIDMMTQAMMLAKKPHVVIATPGRLIDHLENTKGFTL---KNLRYLVMDEADRIL 186
Query: 255 CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ +V +++ + + ++ + + +K ++ +SLT P
Sbjct: 187 NMDFEEEVDKILKVIPRENRRTYLYSATMTKKVAKLQRASLTDP 230
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF T + + +L+ G H +S +R L F+ + + + TD AARG
Sbjct: 274 IVFCATCNGTQKLALMLRNLGFTAIPLHGQMSQAKRLGALQKFKAQARNILLATDVAARG 333
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + ++ + +L I
Sbjct: 334 LDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKAVTFVSQYDVELYQRI 385
>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 479
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 10/209 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q +F +AT+P K AG +LK A S + R+ + I
Sbjct: 171 RKIASQLPKERQNLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVE----RIDQSLIF 226
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + L E + ++ R++VF T V K L +GIE H D +
Sbjct: 227 IEAQRKRPLLAELLADK-----SVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQ 281
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R + L F+ + + TD AARGID+ +VSHV + ++HR+GRTAR G+
Sbjct: 282 GQRERALAAFKAGQVKALIATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGK 341
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G+ S + R+L+ I++A + P
Sbjct: 342 EGIAISFCADDERNLLKDIQKATRQTIPT 370
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 26/181 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ L++AL + G+ P+ +QA ++ V+SG+D++ A+TG+GKT ++ +P++ +
Sbjct: 4 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 63
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA-V 203
L DK+P P R LVL P L Q+ D G+ + VA +
Sbjct: 64 LA----------EDKKPAPRRGFRCLVLSPTRELATQIAESFR----DYGKHMGLTVATI 109
Query: 204 CGGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + P K DV+V+TP L++++ K + GV+ V DEAD +L
Sbjct: 110 FGGVKYGPQMKALAAGVDVVVATPGRLMDHLGEK----SAHLNGVEIFVLDEADQMLDLG 165
Query: 258 F 258
F
Sbjct: 166 F 166
>gi|342319649|gb|EGU11596.1| ATP-dependent RNA helicase DBP3 [Rhodotorula glutinis ATCC 204091]
Length = 623
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+ A K+ + G + + +VFA + + L+ G E C + D+S E+R K+L +F
Sbjct: 447 LNATKKGADKGKDRDKALVFALYKKEATRLFEFLRMKGYEVACINGDMSQEKRTKSLEDF 506
Query: 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K + V TD AARG+DIP V VI F + D++HR+GRT RAG+ G + +TE
Sbjct: 507 KLGKANILVATDVAARGLDIPKVELVINQTFPLTIEDYVHRIGRTGRAGRTGKSITFFTE 566
Query: 530 SNRDLVDTIRR 540
+++ L R
Sbjct: 567 ADKALAGQFIR 577
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 36/217 (16%)
Query: 76 DTFFADDNVTWK---------------SLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
D F +++N++++ SL L+D + + L SGF +P+ +Q+AS +L+
Sbjct: 153 DAFLSENNISYEPESAKTQFPPVLSFASLPLADGVRKGL--SGFAKPTPIQSASFPLMLA 210
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180
G+DV+ AETGSGKT ++ VP IE + + L S K P L++CP L
Sbjct: 211 GRDVIGIAETGSGKTVAFGVPAIEHILS-LPTSPAGKKGKSTAP--VSVLIICPTRELAM 267
Query: 181 QVVRMANALSADNGEPLVRAVAVCGGQGWPI---------GKPDVIVSTPAALLNNIDPK 231
Q LS + +VC G P +P ++V TP LL D
Sbjct: 268 QT---HQNLSLISSALSPSLPSVCLYGGVPKPEQVKILRNDRPRIVVGTPGRLL---DLA 321
Query: 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
R ++ + V ++V DEAD +L F+N + +I +
Sbjct: 322 REGNLDLGK-VSWLVLDEADRMLDKGFENDIREIIKL 357
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ T++ LG+ L AL+N G+ P+ +QA S+ L GKD++ AETGSGKT ++ +P+
Sbjct: 58 STTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIGLAETGSGKTAAFAIPV 117
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
I++L P P A V+ P LC Q+ A+ A G +R
Sbjct: 118 IQQLL------------DNPQPFFA--CVMSPTRELCVQIAEQFEAIGAGIG---LRTAV 160
Query: 203 VCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + K P V++ TP + +++ + + + +K+++FDEAD LL
Sbjct: 161 LVGGLDMVSQAIALSKNPHVVIGTPGRMADHLANTKGFHL---KKLKFLIFDEADRLLSM 217
Query: 257 SFQNQV 262
F+ Q+
Sbjct: 218 DFEKQI 223
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA 484
+ ++F T + + IL+ + + L+ +R L F+ + + + TD A+
Sbjct: 300 KMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALNKFKANERNILIATDVAS 359
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RG+DIP V VI D + D++HRVGRTARAG+ G + T+ + V+T ++ +L
Sbjct: 360 RGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYD---VETFQKIEQL 416
>gi|395763064|ref|ZP_10443733.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 468
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 110/201 (54%), Gaps = 24/201 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++SLGL +I AL SG+ P+ VQ+ ++ + G+D++++++TGSGKT ++++P +
Sbjct: 1 MTFESLGLHPSIIAALTESGYTAPTAVQSQAIPAAIEGRDLLVSSQTGSGKTAAFMLPSL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS------------LVLCPNVVLCEQVVRMANALSA 191
KL +A + ++E RA LVL P L QV + S+
Sbjct: 61 HKLASAEQSAAGKTPNQEMQASRARGERPRFKAAQPKMLVLTPTRELALQVTTNTDKYSS 120
Query: 192 DNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
G ++AV++ GG +P P+++V+TP L++++D +++F + ++ +
Sbjct: 121 --GIRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMDSG---KIDFSQ-LEIL 174
Query: 246 VFDEADMLLCGSFQNQVIRLI 266
V DEAD +L F + + +++
Sbjct: 175 VLDEADRMLDMGFIDDIEKIV 195
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + L AG H D+ R +TL + + V V TD AA
Sbjct: 269 QAVVFTATKRDADTIADRLNIAGFSAAALHGDMHQGARNRTLDGMRRGQVKVLVATDVAA 328
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RGID+P ++HV D D++HR+GRT RAG+ GL SL + V I R K
Sbjct: 329 RGIDVPTITHVFNYDLPKFPEDYVHRIGRTGRAGRNGLAISLVNHAEGMNVKRIERFTKQ 388
Query: 545 GQPV 548
PV
Sbjct: 389 LIPV 392
>gi|383458360|ref|YP_005372349.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380732541|gb|AFE08543.1| DEAD-box ATP dependent DNA helicase [Corallococcus coralloides DSM
2259]
Length = 805
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+V++ + LS+ L RAL G+ P+ VQA + GP ++GKD+++ ++TG+GKT ++ +PL
Sbjct: 27 DVSFDEMNLSEPLRRALAERGYTSPTPVQAKAFGPAMAGKDLIVRSKTGTGKTAAFGLPL 86
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+EK+ +D++ R +L+LCP L QV L+ G V+ A
Sbjct: 87 LEKIP----------ADEK----RVRALILCPTRELALQVAEELTTLAKYKG---VKVAA 129
Query: 203 VCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ GG +G PI IV TP + ++I+ R + G + V DEAD
Sbjct: 130 IYGGASMKQQEDALEEGTPI-----IVGTPGRVFDHIN----RGNLKLDGCDHAVLDEAD 180
Query: 252 MLLCGSFQNQVIRLIN 267
+L F +V R+++
Sbjct: 181 EMLNQGFYEEVTRILD 196
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCTD 481
E S ++F NT D VT +L G + + DL +ER + + + F V TD
Sbjct: 266 EPSNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATD 325
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
AARGIDI + +VI +LHRVGRT R G G +L+ S R+L
Sbjct: 326 IAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLF--SGRELA 377
>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
Length = 503
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 4/201 (1%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ + + +Q + +AT KK A + LK + I + + ++
Sbjct: 198 DISRILQLLPQHRQSLLFSATFSPEIKKLAKSFLKD---NPTVIEVARENSTAETVTQEL 254
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + D LI+ +K R G ++ +VF N + + L+ GI H D
Sbjct: 255 FAVNDREKTDVLIDMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDK 314
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ EER L F+ V V TD AARG+DI + VI D SA D++HR+GRT RA
Sbjct: 315 TQEERQVALEGFKNGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRA 374
Query: 518 GQYGLVTSLYTESNRDLVDTI 538
G G+ T L T ++ LV+ I
Sbjct: 375 GAKGVATMLATPEDKRLVEAI 395
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ GL R++ A+E G+ +P+ +Q ++ VL G DV+ AA+TG+GKT Y +PLI
Sbjct: 29 SFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIA 88
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ +N+ P +L+L P L +QV AD PL RA V
Sbjct: 89 RILP------KANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADT--PL-RAGVVY 139
Query: 205 GGQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG +P +++ +TP LL+++ ++R + V+ VV DEAD +L
Sbjct: 140 GGVDI---RPQADMLRRGVEILTATPGRLLDHV----QQRSVNLSQVEIVVLDEADRMLD 192
Query: 256 GSFQNQVIRLINMF 269
F + R++ +
Sbjct: 193 MGFLPDISRILQLL 206
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 29/191 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ LG+ D L A E G+ P+ +Q + L G+D++ AETGSGKT ++++P+++
Sbjct: 29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQ 88
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L DK P + SL+L P L +Q+ AL A VR +
Sbjct: 89 ALM-----------DK---PQQFHSLILAPTRELAQQIAHTVEALGARIS---VRCTLLI 131
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL---C 255
GG Q +G KP VIV+TP LL++++ + + R +KY+V DEAD LL
Sbjct: 132 GGMDMISQAIALGKKPHVIVATPGRLLDHLENTKGFSL---RTLKYLVLDEADRLLDLDF 188
Query: 256 GSFQNQVIRLI 266
G ++++RL+
Sbjct: 189 GPILDKLLRLL 199
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++F TV ++ +L+ G H LS R +L F+ + + + TD AARG
Sbjct: 270 IIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARG 329
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
+DIP V +V+ D + ++HRVGRTARAG+ G+ S T+ +L
Sbjct: 330 LDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVEL 377
>gi|333470576|gb|AEF33826.1| DEAD box helicase DDX5 [Cherax quadricarinatus]
Length = 522
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 400 EVTVDTQVDALI-EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV DT++ L+ E V+ER +T++F T V VT+ L++ G C H D
Sbjct: 316 EVEKDTKLRQLLNEMVQER------AYKTIIFIETKRKVEDVTRGLRSTGWPEVCIHGDK 369
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +ER L F+ + + V TD AARG+D+ +V VI D+ + + D++HR+GRT R+
Sbjct: 370 SQQERDWVLSEFRSGRAPILVATDVAARGLDVDDVKFVINYDYPSCSEDYVHRIGRTGRS 429
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T N +DL+D ++ A ++ P
Sbjct: 430 DKTGTAYTFFTADNCKQAKDLIDVLKEANQVVNP 463
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 39/210 (18%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
+F+D N D ++ + G+ +P+ +Q L G+D V A+TGSGKT
Sbjct: 89 YFSDYN-------FPDYVMAEIRRQGYEQPTPIQGQGWPISLQGRDFVGIAQTGSGKTLG 141
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNG 194
Y++P I + + +P R +L+L P L +Q++ +A +
Sbjct: 142 YILPAIVHI------------NHQPYLERGDGPIALILAPTRELAQQILTVAQDYGTSSK 189
Query: 195 EPLVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+R+ V GG P G ++ ++TP L++ ++ + +R Y+V
Sbjct: 190 ---IRSTCVFGGA--PKGPQIRDLERGVEICIATPGRLIDFLEAGKTN----LRRTTYLV 240
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD ++ F+ Q+ ++++ R D + L
Sbjct: 241 LDEADCMMEMGFEPQIRKIVDQIRPDRQTL 270
>gi|395218269|ref|ZP_10401928.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394454639|gb|EJF09256.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 380
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 20/191 (10%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SLGLS L+R+++ G+ P +Q ++ +L GKD++ A+TGSGKT S+ +P++
Sbjct: 1 MSFSSLGLSAPLLRSIQEQGYTAPYPIQTRAIPAILKGKDLLGIAQTGSGKTASFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E L + + ++ +LVL P L Q+ + A G P V+ +AV
Sbjct: 61 E-----LYQQKQAGRNR-----YVRTLVLVPTRELAVQIEEVFRAFGKGLGRP-VKTLAV 109
Query: 204 CGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + DV+V+TP LL+ I+ K E V+ +V DEAD +L F
Sbjct: 110 YGGISINPQMMKLSGTDVLVATPGRLLDLIENKAVHLSE----VETLVLDEADKMLNLGF 165
Query: 259 QNQVIRLINMF 269
Q +V +L+ M
Sbjct: 166 QEEVNKLLGML 176
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+ + +VFA+++ V LK GIE +H D S R + L F+ K V V TD
Sbjct: 243 DMQQVLVFASSIRTADNVVGKLKKHGIEAAAFHGDRSQGGRTEALRQFKAGKLRVLVATD 302
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
A+RGIDI + +VI + S D++HR+GRT RA G SL T
Sbjct: 303 LASRGIDIKFLPYVINYELPRSPKDYVHRIGRTGRAEASGEAISLIT 349
>gi|157115632|ref|XP_001658272.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108876828|gb|EAT41053.1| AAEL007274-PA [Aedes aegypti]
Length = 442
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 38/245 (15%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
++KNG++D+ + +W+ +GL D L A + PS +Q ++ L GKDV+ A
Sbjct: 44 NNKNGNADS--EEKQASWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLA 101
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT ++ +P+++ L EN P R +++L P L Q+ A
Sbjct: 102 ETGSGKTGAFALPILQALL------EN--------PQRYFAVILTPTRELAYQISEQFEA 147
Query: 189 LSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L A G ++ + GG Q + KP +I++TP L+++++ + + + V
Sbjct: 148 LGASIG---IKCCVIVGGMDMVSQALHLARKPHIIIATPGRLVDHLENTKGFNL---KAV 201
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDN 292
KY+V DEAD +L F+ ++ +++ + F F K++ ++ + ++ P++++
Sbjct: 202 KYLVMDEADRILNLDFEVELEKILKVIPRERRTFLFSATMTKKVKKLERASLKDPVKVEV 261
Query: 293 SSLTQ 297
SS Q
Sbjct: 262 SSKYQ 266
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 495 VIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
++ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 315 IVNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 358
>gi|442609095|ref|ZP_21023836.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441749707|emb|CCQ09898.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 409
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 29/190 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++SLGL +L+ AL + GF +P+ +Q ++ VL+GKD++ +AETGSGKT ++L+P++
Sbjct: 1 MSFQSLGLEPQLLDALSSLGFEQPTPIQLDAIPVVLTGKDLLASAETGSGKTAAFLLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L + E PRA LVL P L +Q+V+ L+A +R V +
Sbjct: 61 NRLVQTV----------ERGIPRA--LVLAPTRELAQQIVKHGEELAAKTE---LRFVLL 105
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG IG D++V+TP LL+++ + + ++ VV+DEAD LL
Sbjct: 106 QGGAN--IGPQCERLAQGVDIVVATPGRLLDHLI----KGSLSLSAIETVVYDEADRLLD 159
Query: 256 GSFQNQVIRL 265
F++++ R+
Sbjct: 160 MGFKDEIQRI 169
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VFA T V + G+ H D + R K L F++ K V V TD AA
Sbjct: 243 QVLVFARTKQLVDEYVQEFILDGLPASALHGDKTQGHRNKALEQFKDGKIRVLVATDVAA 302
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
RGIDIP +S VI + A D++HR+GRT RAG GL S +
Sbjct: 303 RGIDIPALSVVINMELPFVAEDYIHRIGRTGRAGNEGLALSFVS 346
>gi|383456574|ref|YP_005370563.1| ATP-dependent RNA helicase [Corallococcus coralloides DSM 2259]
gi|380734129|gb|AFE10131.1| ATP-dependent RNA helicase [Corallococcus coralloides DSM 2259]
Length = 421
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGLSD L RA+ G+ P+ VQ A++ VL G DV+ +A+TGSGKT ++L+PL+
Sbjct: 1 MTFASLGLSDALARAVAELGYDEPTPVQRAAIPVVLRGGDVLASAKTGSGKTAAFLLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E L G + P RA +L P L Q+V +PL +AV
Sbjct: 61 EALRARPGGAVR--------PVRA--FILVPTRELAAQIVDSLQRYGRHLKKPLKTCLAV 110
Query: 204 CGGQGWPI-----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G P G DV+V+TP L+ +D R + V+ +V DEAD L F
Sbjct: 111 GGVSANPQMLALRGGADVVVATPGRALDLVDQNALR----LGAVETLVLDEADRLFSLGF 166
Query: 259 QNQVIRLINMF 269
+++ RL+ +
Sbjct: 167 ADELNRLLALL 177
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAA 483
S + F + A V L AGI H DLS R + L +F+ K V V TD A
Sbjct: 247 SHVLTFVASRYAADHVALKLNRAGIPATSLHGDLSQGARTQALADFKAKRVRVLVATDVA 306
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY---TESNRDLVD 536
ARG+DI + V+ D S VD++HR+GRT RAG G+ S TE++ L++
Sbjct: 307 ARGLDIAGLPAVVNYDLPRSTVDYVHRIGRTGRAGDPGVAISFVSADTEAHFRLIE 362
>gi|219111811|ref|XP_002177657.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410542|gb|EEC50471.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 455
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 199/466 (42%), Gaps = 97/466 (20%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDV--VIAAETGSGKTHSYLVPLI 143
+ LGL+D L+ GF RP+ VQ + +L DV + A TGSGKT ++++P++
Sbjct: 10 FSELGLADPLVTTCRQLGFKRPTPVQRVIIPYLLRHDDVHLLTLAATGSGKTAAFVLPIL 69
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL--SADNGEPLVRAV 201
+L P P +++L P L +Q+ + AL SA N V++
Sbjct: 70 HRLA--------------PDPYGIFAVILTPTRELAKQIHQQVLALGSSAYN----VQSA 111
Query: 202 AVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V GG Q + + P V+TP R E +RG +
Sbjct: 112 LVVGGLDATRQSLDLDRRPHFCVATPG-----------RLAELLRGPR------------ 148
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
+++ + DE D ++
Sbjct: 149 ----PPMLKHVRYMVLDEA---------------------------------DRLLAPGS 171
Query: 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA---TLPINGKKTAGAVL 372
FE D E L T S ++ D R+ Q + +F A TL + ++ AGA L
Sbjct: 172 GFERDIS-ELLLHCTTSPTLAAVDGATGRERRQTCQTLLFSATMTRTLE-SVEEMAGAGL 229
Query: 373 KQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS--RTMVF 430
++ P ++ L + PR K+K++ + + L+ A++E + G T ++F
Sbjct: 230 GRL-PLKKFVIHEGLGTNEPRSKKKYVFMPSRVRDAYLLTAIRELMANGGPTKARSAIIF 288
Query: 431 ANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDI 489
+T + V+ IL G++ H LS R +L F+ ++ V V TD A+RG+DI
Sbjct: 289 VSTCERAAFVSGILAQVGVDNVALHSLLSQNRRLASLAKFKSQQVRVLVATDVASRGLDI 348
Query: 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
P+V V+ ++ +A+ ++HRVGRTARAG+ G S +E++ LV
Sbjct: 349 PSVDLVLNSELPRNAISYVHRVGRTARAGRRGRAISFVSEADVALV 394
>gi|359768236|ref|ZP_09272012.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|378717409|ref|YP_005282298.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|359314324|dbj|GAB24845.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|375752112|gb|AFA72932.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 587
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D +T+ L + DR+ A+ G+ PS +QAA++ P+++G+DVV A+TG+GKT ++ +P
Sbjct: 13 DAITFDDLDIDDRVRSAIAEVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIP 72
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
++ ++ +P R +L+L P L QV + SA P VR +
Sbjct: 73 ILSRI--------------DPAVRRPQALILAPTRELALQVSEAFSRYSAHM--PEVRVL 116
Query: 202 AVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ GGQ + + VIV TP +++++D + + ++Y+V DEAD +L
Sbjct: 117 PIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLD----KGTLDISELEYLVLDEADEMLT 172
Query: 256 GSFQNQVIRLI 266
F V R++
Sbjct: 173 MGFAEDVERIL 183
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 14/213 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ SKQ +AT+P ++ A ++ D I+ + ++
Sbjct: 177 EDVERILAETPDSKQVALFSATMPSAIRRLA----QKYLHDPQEITVKSKTATAQNITQR 232
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+++V+ ++DAL ++ ET M VF T A + + L+ G +
Sbjct: 233 YLQVSHQRKLDALTRFLE------VETFDAMIVFVRTKQATEELAERLRARGFSAVAING 286
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D+ +R +T+ ++ G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 287 DMVQAQRERTINQLKDGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 346
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G + R L+ I RA + QP+
Sbjct: 347 RAGRSGNALLFVSPRERHLLRAIERATR--QPL 377
>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
Length = 539
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++ L++ + + E GA +T++F T V +T+ ++ G C H D + +ER
Sbjct: 339 ENKLNVLLQEIGQSQEPGA---KTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQER 395
Query: 464 AKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
L F Q + + V TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 396 DDVLYQFKQGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 455
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV+ ++ A + P
Sbjct: 456 SYAFFTPSNSRQAKDLVNVLQEANQTISP 484
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
D +++ + N G+ P+ +QA +SG ++V A+TGSGKT +Y++P I +
Sbjct: 114 FPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPAIVHI---- 169
Query: 151 GDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGEP-LVRAVAVCGG 206
+ +P R +LVL P L +Q+ ++A D G VR V GG
Sbjct: 170 --------NNQPPIRRGDGPIALVLAPTRELAQQIQQVA----CDFGNASYVRNTCVFGG 217
Query: 207 -----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
Q + + +++++TP L++ ++ + ++ Y+V DEAD +L F+
Sbjct: 218 APKREQARDLERGVEIVIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEP 273
Query: 261 QVIRLINMFRFDEKQL 276
Q+ ++I R D + L
Sbjct: 274 QIRKIIEQIRPDRQTL 289
>gi|145240463|ref|XP_001392878.1| ATP-dependent RNA helicase DBP10 [Aspergillus niger CBS 513.88]
gi|134034062|sp|A2QRY2.1|DBP10_ASPNC RecName: Full=ATP-dependent RNA helicase dbp10
gi|134077396|emb|CAK40010.1| unnamed protein product [Aspergillus niger]
Length = 932
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 47/240 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+I+K
Sbjct: 92 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQK 151
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L ++AV + G
Sbjct: 152 LKS------------HSTQVGARGLILSPSRELALQTLKVVKELGKGTD---LKAVLLVG 196
Query: 206 GQGWP------IGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G PD++++TP L+ N+D + ++YVVFDEAD L
Sbjct: 197 GDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLD---------LSSIRYVVFDEADRLF 247
Query: 255 CGSFQNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ +F K L +G+++P + +D S PDLQ+
Sbjct: 248 EMGFAAQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQN 307
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++FA T V + +L AG + L R + NF+ + V TD AAR
Sbjct: 377 TIIFAATKHHVDYLYSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAAR 436
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + A F+HRVGRTARAG+ G SL +S+
Sbjct: 437 GIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSD 482
>gi|401412566|ref|XP_003885730.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
gi|325120150|emb|CBZ55704.1| putative DEAD/DEAH box RNA helicase [Neospora caninum Liverpool]
Length = 969
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 20/195 (10%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
W L LS L+RA+++ + P+ +QAA + P L G+D++ A+TGSGKT ++L+P
Sbjct: 230 QTAWGDLPLSRPLLRAIQDLEYAHPTHIQAACLRPALEGRDLLANAQTGSGKTAAFLLPT 289
Query: 143 IEKLCTALGDSENSNSDKEPTPPRA-----PSLVLCPNVVLCEQVVRMANALSADNGEPL 197
+E+L + G + P P +LVL P L Q V+M LS P+
Sbjct: 290 LERLLHSPGVRTRKMT---PNGPAGGLRGTKALVLLPTRELAMQCVQMLQCLSKYT--PV 344
Query: 198 VRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
A+A CGG +PD++V+TP +L+ + +E ++ +V DEAD
Sbjct: 345 THALA-CGGMTLKAHENALRQQPDIVVATPGRILDLLLNSPTVHLEL---LEIIVLDEAD 400
Query: 252 MLLCGSFQNQVIRLI 266
LL F+ +++ ++
Sbjct: 401 RLLELGFREEILAIL 415
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFV-CT 480
A T +VF T + + + K G++ H +L+ + R + L F F+ +
Sbjct: 510 AYTKNVIVFFQTKQLAHQTSLLFKFMGLQYAELHGNLTQQMRVEALERFHAGEADFLLAS 569
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+ A+RG+DI V VI + ++H VGRTAR G+ G+ +LY
Sbjct: 570 ELASRGLDIAGVEAVINFNVPADIDRYIHSVGRTARMGRSGVAVTLY 616
>gi|409078207|gb|EKM78570.1| hypothetical protein AGABI1DRAFT_100622 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 494
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 11/212 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q + +AT P + +K A LK M + S + HN ++ +E
Sbjct: 230 RKIVGQIRPDRQTLMFSATWPKDVQKLASDFLKDMI-QVNIGSMDLTANHN---IQQIVE 285
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V D + + + +K + AE ++ ++F T +TK L+T G H D
Sbjct: 286 VCSDFEKRSKL--IKHLDQISAENAKVLIFVGTKRIADDITKYLRTDGWPALAIHGDKEQ 343
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L F+ + + + TD A+RG+D+ +V +VI DF + D++HR+GRT RAG
Sbjct: 344 RERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGL 403
Query: 520 YGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L++ +R A + P
Sbjct: 404 KGTSYTYFTTENAKAARELINILREAKAVIPP 435
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ G L+ ++ GF P+ +Q + LSG+DVV A+TGSGKT S+ +P +
Sbjct: 62 SFEEAGFPQYLMTSIRAQGFSSPTPIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAML 121
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P +L+L P L Q+ + +++ +R A+
Sbjct: 122 HI----------NAQPLLAPGDGPIALILAPTRELAVQIQQECTKFGSNS---RIRNTAI 168
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G ++ ++TP L++ ++ + ++ + Y+V DEAD +L
Sbjct: 169 YGGA--PKGPQIRDLQRGVEIAIATPGRLIDMLESGKTN----LKRITYLVLDEADRMLD 222
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ +++ R D + L
Sbjct: 223 MGFEPQIRKIVGQIRPDRQTL 243
>gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS]
Length = 464
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q I AT PI + A + K P I + N R+K+ +EV + D
Sbjct: 277 QKRQTIMFTATWPIGVRNLAASFTKN--PVTVTIGDSSDIRANKRIKQ-MVEVLQPYEKD 333
Query: 409 A-LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ L+E ++ + G R +VF V + + + G + H D+S ER ++L
Sbjct: 334 SRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSL 393
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ + V TD AARG+DIP V V+ F + D++HR+GRT RAG GL +L
Sbjct: 394 EAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITL 453
Query: 527 YTESNRDL 534
+TE ++ L
Sbjct: 454 FTERDKAL 461
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QA S +G+D++ AETGSGKT ++ +P + ++ + NS + +P
Sbjct: 119 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVL----ELNNSETSCKPC 174
Query: 164 PPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVS 219
+L++ P V + +Q++R ++A+ D G + + Q I V+++
Sbjct: 175 -----ALIITPTRELAVQIYDQLLRFSSAV--DVGIACIYGGSPKDHQRREIRNASVVIA 227
Query: 220 TPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRM 279
TP L + + + + GVKY+V DEAD +L F+ + ++ +K+ + M
Sbjct: 228 TPGRLKDF----QADQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIM 283
>gi|381199589|ref|ZP_09906736.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
gi|427407897|ref|ZP_18898099.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
gi|425713860|gb|EKU76872.1| hypothetical protein HMPREF9718_00573 [Sphingobium yanoikuyae ATCC
51230]
Length = 476
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
+R+ K R +Q +F +AT+P + AG Q D +S R++++
Sbjct: 169 LKRIAKLLPRDRQNLFFSATMPKEIEALAG----QFLNDPVKVSVAPQSTTAERVRQQLT 224
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + AL+ V + E R ++F T V + L+ AGI+ + H + S
Sbjct: 225 FVN-QAEKQALLHIVLKT----EEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKS 279
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R L F+ + V TD AARGID+ VSHVI + ++HR+GRTARAG
Sbjct: 280 QAQRTTALQAFRHGHCKLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAG 339
Query: 519 QYGLVTSLYTESNRDLVDTIRRAAKL 544
G+ S + R + I RA K+
Sbjct: 340 ADGIAISFVADDERPYLKAIERATKV 365
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 28/200 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS+ +I+AL + P+ +Q ++ +L G+D+ A+TG+GKT ++ +P ++
Sbjct: 3 FNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDY 62
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ +PTP + LVL P L Q+ + D G L +V
Sbjct: 63 FA----------RNPKPTPIKGCRMLVLSPTRELAAQIAQSFR----DYGRFLRLSVETV 108
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G G P+ K D++V+TP LL+ ID +R ++ + V DEAD ++
Sbjct: 109 FG-GVPVNKQIRALSAGVDIVVATPGRLLDLID----QRAFTIKDTEIFVLDEADQMMDM 163
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F + + R+ + D + L
Sbjct: 164 GFIHPLKRIAKLLPRDRQNL 183
>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
Length = 821
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 36/234 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGLS + +A+ G+ P+ +Q ++ +L+G DVV A TGSGKT ++L+P++EK
Sbjct: 55 FESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 114
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++S K P A +L+L P L Q + L + +R + G
Sbjct: 115 L--------RAHSPK----PGARALILSPTRELALQTFKFCKELGRNTD---LRITVLVG 159
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G PD++++TP L++++ + + V+YVVFDEAD L F
Sbjct: 160 GDSMETQFEQLSKNPDILIATPGRLMHHLSEVEGMSL---KSVEYVVFDEADRLFEMGFA 216
Query: 260 NQVIRLINMFR-------FDE---KQLSRMNESGVEKPL--EMDNSSLTQPDLQ 301
Q+ +++ F + L+ ++G++ PL +D + PDL+
Sbjct: 217 EQLRQILTQLHELRQTLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLK 270
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R++ +Q + +ATLP A A LK D + + +P LK +
Sbjct: 219 LRQILTQLHELRQTLLFSATLPRLLADFAKAGLK----DPLTVRLDTETKISPDLKLAFF 274
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
+ + ++ L+ ++E + + +T+VF +T V + ++LK+ GI+ + +
Sbjct: 275 TMRKEEKLACLVHLLREVV---SSEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMD 331
Query: 460 LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R + F+ K + + TD AARGIDIP + +V+ DF F+HRVGR ARAG
Sbjct: 332 QTARKINVAKFRARKTMILLVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAG 391
Query: 519 QYGLVTSLYT 528
+ G S T
Sbjct: 392 RTGTAYSFLT 401
>gi|395538709|ref|XP_003771317.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
[Sarcophilus harrisii]
Length = 411
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 42/257 (16%)
Query: 73 GSSDTFFAD--DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
GSS+ A+ + T+K LG+++ L A + G+ P+ +Q ++ L G+D++ AET
Sbjct: 12 GSSEPKEAEVQETKTFKDLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAET 71
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190
GSGKT ++ +P++ L TP R +LVL P L Q+ AL
Sbjct: 72 GSGKTGAFALPILNALLE--------------TPQRFFALVLTPTRELAFQISEQFEALG 117
Query: 191 ADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
+ G V + GG Q + KP VI++TP L+++++ + + R +KY
Sbjct: 118 SSIG---VECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKY 171
Query: 245 VVFDEADMLLCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSS 294
+V DEAD +L F+ +V +++ + D K++ ++ + ++ P++ SS
Sbjct: 172 LVMDEADRILNMDFETEVDKILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 231
Query: 295 LTQPDLQDEENLQDEYI 311
Q E LQ Y+
Sbjct: 232 ----KYQTVEKLQQYYL 244
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R +L F+ K + + TD A+RG+DIP+V V+ D T + D++HRVGRTARAG+
Sbjct: 253 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 312
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 313 GKSITFVTQYDVELYQRI 330
>gi|426199199|gb|EKV49124.1| hypothetical protein AGABI2DRAFT_65810 [Agaricus bisporus var.
bisporus H97]
Length = 494
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 11/212 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q + +AT P + +K A LK M + S + HN ++ +E
Sbjct: 230 RKIVGQIRPDRQTLMFSATWPKDVQKLASDFLKDMI-QVNIGSMDLTANHN---IQQIVE 285
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V D + + + +K + AE ++ ++F T +TK L+T G H D
Sbjct: 286 VCSDFEKRSKL--IKHLDQISAENAKVLIFVGTKRIADDITKYLRTDGWPALAIHGDKEQ 343
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L F+ + + + TD A+RG+D+ +V +VI DF + D++HR+GRT RAG
Sbjct: 344 RERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGL 403
Query: 520 YGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
G + +T N R+L++ +R A + P
Sbjct: 404 KGTSYTYFTTENAKAARELINILREAKAVIPP 435
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ G L+ ++ GF P+ +Q + L+G+DVV A+TGSGKT S+ +P +
Sbjct: 62 SFEEAGFPQYLMTSIRAQGFSSPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAML 121
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P +L+L P L Q+ + +++ +R A+
Sbjct: 122 HI----------NAQPLLAPGDGPIALILAPTRELAVQIQQECTKFGSNS---RIRNTAI 168
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G ++ ++TP L++ ++ + ++ + Y+V DEAD +L
Sbjct: 169 YGGA--PKGPQIRDLQRGVEIAIATPGRLIDMLESGKTN----LKRITYLVLDEADRMLD 222
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ +++ R D + L
Sbjct: 223 MGFEPQIRKIVGQIRPDRQTL 243
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++AL++ ++ L A+ S+ MVF NT+++ AV L I YH ++ E+R
Sbjct: 346 EDKLEALLQVLEPSL---AKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQR 402
Query: 464 AKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+ L F+++ G VCTD AARG+D+ +V HV+ DF +++D+LHR GRTAR G
Sbjct: 403 VENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAK 461
Query: 521 GL 522
GL
Sbjct: 462 GL 463
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 34/202 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQV 173
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + E +N K+ P R ++VLCP L EQV L D R++ V G
Sbjct: 174 LSELMREDE-ANLGKKTKPRRPRTVVLCPTRELSEQV-----CLHQDYHHARFRSILVSG 227
Query: 206 GQGWPIGKP---------DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLC 255
G +P D++V TP +L +I+ V G + Y+V DEAD +
Sbjct: 228 GSRI---RPQEDSLNNAIDMVVGTPGRILQHIEEG-----NMVYGDIAYLVLDEADTMFD 279
Query: 256 GSFQ----------NQVIRLIN 267
F NQ I+++N
Sbjct: 280 RGFGPEIRKFLAPLNQHIKVVN 301
>gi|389614656|dbj|BAM20360.1| DEAD box ATP-dependent RNA helicase [Papilio polytes]
Length = 539
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++ L++ + + E GA +T++F T V +T+ ++ G C H D + +ER
Sbjct: 338 ENKLNVLLQEIGQSQEPGA---KTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQER 394
Query: 464 AKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
L F Q + + V TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 395 DDVLYQFKQGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 454
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV+ ++ A + P
Sbjct: 455 SYAFFTPSNSRQAKDLVNVLQEANQTISP 483
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
D +++ + N G+ P+ +QA +SG ++V A+TGSGKT +Y++P I +
Sbjct: 113 FPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPAIVHI---- 168
Query: 151 GDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGEP-LVRAVAVCGG 206
+ +P R +LVL P L +Q+ ++A D G VR V GG
Sbjct: 169 --------NNQPPIRRGDGPIALVLAPTRELAQQIQQVA----CDFGNASYVRNTCVFGG 216
Query: 207 -----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
Q + + +++++TP L++ ++ + ++ Y+V DEAD +L F+
Sbjct: 217 APKREQARDLERGVEIVIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEP 272
Query: 261 QVIRLINMFRFDEKQL 276
Q+ ++I R D + L
Sbjct: 273 QIRKIIEQIRPDRQTL 288
>gi|343472940|emb|CCD15039.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 803
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+ ++ V D + D L E + ++ +T ++F T + + L GI
Sbjct: 580 ITQRIQRVPEDEKTDKLFEILYKQ----KQTDLVLIFVETKRSADYLQSTLNNNGIPSTT 635
Query: 454 YHKDLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H D +R L +F K G+ V TD A+RG+DIPNV+HVIQ D D+ HR
Sbjct: 636 IHGDRRQCDRETALTDF--KNGIKPILVATDIASRGLDIPNVAHVIQYDLPKEMDDYTHR 693
Query: 511 VGRTARAGQYGLVTSLYTESNRDLV 535
+GRT RAG G+ TS Y +NR+L
Sbjct: 694 IGRTGRAGNKGIATSFYDRNNRNLA 718
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 47 FLRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGR 106
F R +Q KG +A+ + ++ D +++ L + L + G+
Sbjct: 327 FERHHQQKGISLENYASIPVDIVPRD-------IDPVESFEDLFVEPALALNIAKCGYKE 379
Query: 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR 166
P+ VQ + L+G D++ A+TGSGKT ++L+P++ + G S + P
Sbjct: 380 PTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLIPVVHYILKH-GVSPAKDGMSHPI--- 435
Query: 167 APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTPAALL 225
++++ P L Q+ L+ + V GG +P + D++V+ P L
Sbjct: 436 --AVIMAPTRELALQIYDEVRKLTFRTD---IFYDVVYGGTAYPSRFENDILVACPGRLK 490
Query: 226 NNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
+ D R + F VK+++ DEAD +L F++Q+ L+
Sbjct: 491 DIFD---RSNVSFS-CVKFLILDEADRMLEMGFEDQIEYLV 527
>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1198
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 95/190 (50%), Gaps = 31/190 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGLS + RA+ G+ P+ +Q ++ +L GKDVV A TGSGKT ++LVPL+EK
Sbjct: 259 FQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEK 318
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S T RA L+L P L Q + N LS+ +R + G
Sbjct: 319 L----------QSHVPGTGCRA--LILSPTRELAMQTHKFCNDLSSFTN---LRTRLIVG 363
Query: 206 GQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G+ PD++++TP L+ + ME ++ V+YVVFDEAD L
Sbjct: 364 GESLEQQFAAMHENPDIVIATPGRFLHVV-------MEMNLRLQAVQYVVFDEADRLFEM 416
Query: 257 SFQNQVIRLI 266
F Q+ L+
Sbjct: 417 GFAEQLSELL 426
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V D ++ ALI + + T +++VF T V ++ IL + G+ + +
Sbjct: 479 VRKDEKIGALIHVLTNLIN--TTTEQSIVFVATRHHVEFISLILTSFGLSVASIYGSMDQ 536
Query: 461 EERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
R L F+ K V V TD AARGIDIP +++VI DF F+HRVGR ARAG+
Sbjct: 537 AARKINLAKFRLNKASVMVVTDVAARGIDIPLLNNVINYDFPAKPKLFIHRVGRAARAGR 596
Query: 520 YGLVTSL 526
G+ SL
Sbjct: 597 TGVAYSL 603
>gi|391342263|ref|XP_003745440.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Metaseiulus occidentalis]
Length = 510
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + + +Q + +AT P K A LK D+I N N R+ +
Sbjct: 258 RKIIEQIRPDRQVLMWSATWPKEVKSLAEDFLK------DYIQINIGALQLSANHRILQI 311
Query: 398 WIEVTVDTQVDA-LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
I+V +++ D+ LI ++E + + ++T+VFA T V +T+ ++ G C H
Sbjct: 312 -IDVCSESEKDSKLINLLEEIMN--EKENKTIVFAETKRKVDEITRRMRRDGWPAMCIHG 368
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D + +ER L F+ K + V TD AARG+D+ +V VI D+ + D++HR+GRTA
Sbjct: 369 DKAQQERDWVLHEFRSGKSPILVATDVAARGLDVDDVKFVINYDYPNCSEDYVHRIGRTA 428
Query: 516 RAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
R+ + G + +T +N ++L+D ++ A ++ P
Sbjct: 429 RSNKTGTAYTFFTSNNAKQAQELIDVLQEAKQVVNP 464
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 26/201 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ + L ++ ++ + P+ +QA LSG+D+V A+TGSGKT ++++P I
Sbjct: 89 LTFQEIELPPDVVVVIQEQKYQAPTCIQAQGWPIALSGRDLVGIAQTGSGKTLAFILPAI 148
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ +N + P A LVL P L +Q+ +A+ G VR V
Sbjct: 149 IHI-------QNQPRLQRGDGPIA--LVLAPTRELAQQIQTVADTFGRPAG---VRNTCV 196
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G ++ ++TP L++ ++ + +R Y+V DEAD +L
Sbjct: 197 FGGA--PKGPQLRDLERGVEICIATPGRLIDFLEAGKTD----LRRCTYLVLDEADRMLD 250
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 251 MGFEPQIRKIIEQIRPDRQVL 271
>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CMR15]
Length = 613
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 32/226 (14%)
Query: 57 PFRGFAAAAAVVSDKNGSSDTFFADDNVTWKS---LGLSDRLIRALENSGFGRPSIVQAA 113
P G A A SD SDT A+ + LGL +R+ RAL + +P+ VQA
Sbjct: 4 PQNGSGAIAHAESD----SDTLIANAATQASAFAALGLDERIARALGELNYTQPTPVQAQ 59
Query: 114 SVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT--------ALGDSENSNSDKEPTPP 165
++ LSG+D+++ ++TGSGKT ++++P I+++ A G + + P
Sbjct: 60 AIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQRPRADGPQQRVKGRRPRPEP 119
Query: 166 RAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDV 216
PS LVL P L QV +A G L R V ++ GG +P PD+
Sbjct: 120 AKPSLLVLTPTRELALQVT----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDI 175
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
I++TP LL++ID R + + +VFDEAD +L F + +
Sbjct: 176 IIATPGRLLDHIDSGR----IDLSALDMLVFDEADRMLDMGFADDI 217
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 291 ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 26/183 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ LGL + +A+E GF +P+ +Q ++ ++ GKDVV + TGSGKT ++++P+++K
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ RA L++ P L Q ++ L G +R + G
Sbjct: 86 L-----------KGRDTKGIRA--LMVSPTRELALQTFKVVKELGRFTG---LRCACLVG 129
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + PD++++TP LL+ I + R+ F V+YVVFDEAD L FQ
Sbjct: 130 GDVLEEQFSTIHENPDILLATPGRLLHVI-VEMDLRLSF---VQYVVFDEADRLFEMGFQ 185
Query: 260 NQV 262
+Q+
Sbjct: 186 DQL 188
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD 481
E +T++F T+ V V IL AGI+C + L R + + F EK + V TD
Sbjct: 264 ENKQTVIFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKFHEKQNNILVVTD 323
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DIP + VI F + A F+HRVGR ARAG+ G SL
Sbjct: 324 VAARGVDIPLLDTVINLHFPSKAKLFVHRVGRVARAGRSGTAISL 368
>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
malayi]
gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
[Brugia malayi]
Length = 462
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
DD++T++ LG++D L A + + +P+ VQ A++ +D++ AETGSGKT ++ +
Sbjct: 21 DDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAI 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L TP + +LVL P L Q+ AL A G ++ A
Sbjct: 81 PILQALL--------------ETPQKLFALVLTPTRELAFQIGEQFEALGASIG--ILIA 124
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P VIV+TP L+++++ + + R +KY+V DEAD +L
Sbjct: 125 VIVGGVDTVTQSLALAKRPHVIVATPGRLVDHLENTKGFNL---RALKYLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ ++ +++ + E++ + + +K +++ +SL P
Sbjct: 182 MDFEVELEKILKVIP-KERRTYLYSATMTKKVAKLERASLNDP 223
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VF 477
E +T+ +VF +T + +L+ G H +S +R +L F+ K V
Sbjct: 260 EMAGQTA--IVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVL 317
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
VCTD A+RG+DIP+V V+ D T + D++HRVGRTARAG+ G+ + T+ + ++
Sbjct: 318 VCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQK 377
Query: 538 IRR 540
I R
Sbjct: 378 IER 380
>gi|194290281|ref|YP_002006188.1| DEAD/DEAH box helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
taiwanensis LMG 19424]
Length = 624
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 23/194 (11%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGL ++RAL + + P+ VQA ++ L+G+D++++++TGSGKT ++++P I+++
Sbjct: 54 LGLDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISE 113
Query: 149 ALGDSENSNSDK-------EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+ K P P + LVL P L QV A A G L R V
Sbjct: 114 MPAPQRATEPAKRMKGKRPRPAPAQPALLVLTPTRELALQVTEAA----AKYGRNLRRIV 169
Query: 202 --AVCGGQGWP-----IGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
++ GG +P + K PD++V+TP LL++ID R + ++ +VFDEAD +
Sbjct: 170 CASILGGMPYPKQLAMLAKMPDILVATPGRLLDHIDAGR----IDLSALQMLVFDEADRM 225
Query: 254 LCGSFQNQVIRLIN 267
L F + + ++N
Sbjct: 226 LDMGFADDIDAIVN 239
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D++ R +TL + V V T
Sbjct: 308 ASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVAT 367
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L ++
Sbjct: 368 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHND 418
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|440469812|gb|ELQ38909.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae Y34]
Length = 760
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
FAA A + G+ D W+ LGLS+ ++ ++ F +P+ +QAA++ +L+
Sbjct: 171 FAALAEIDETDEGA-------DVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILA 223
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN-SDKEPTPPRAPSLVLCPNVVLC 179
G DVV A TGSGKT ++ +P++EK + +++ ++ E P A LVL P L
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIA--LVLSPTRELA 281
Query: 180 EQVV-RMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRR 233
Q+ + N + P V +V GG Q + K D++V TP L + +
Sbjct: 282 HQLTDHIKNLCAGLATSPYV--CSVTGGLSVHKQQRQLEKADIVVGTPGRLWEVLSSSTK 339
Query: 234 RRMEFVRGVKYVVFDEADMLLC-GSFQN 260
F RG+K++V DEAD LL G F++
Sbjct: 340 LIQAF-RGIKFLVVDEADRLLSEGHFKD 366
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK----GGVFVC 479
T RT+VF N++ +V +T +L+ + H + + R +++ F + +
Sbjct: 477 TQRTLVFTNSISSVRRLTPMLQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIA 536
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
TD AARG+DI + VI +A ++HR GRTARA GL
Sbjct: 537 TDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARADSSGL 579
>gi|411012166|ref|ZP_11388495.1| ATP-dependent RNA helicase SrmB [Aeromonas aquariorum AAK1]
Length = 407
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 113/243 (46%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVEEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK+ LH PR + + W+ + D ++ L+ +K
Sbjct: 196 EKFASEILKEPV---------ELHAEPPRSERRPITQWVHLADDAAHKLALLVHILK--- 243
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
ET + ++F T + + ++ L+ AG+ C ++ +R +++ F E F
Sbjct: 244 --NPETQKAIIFVKTRERLAELSGQLQAAGVPCAWIRGEMEQAKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 28/212 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L+ L RAL GF RP+ +Q + P L G+D++ +A TG+GKT ++L+P ++
Sbjct: 4 SFDDFDLNPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R LVL P L QV A AL+A + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LVLTPTRELALQVTAHAKALAAHTN---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEK 286
F V R++ R+ + + + + +G+EK
Sbjct: 166 FIKDVNRIVEEARYRKHTMLFSATLEGAGLEK 197
>gi|395503712|ref|XP_003756207.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sarcophilus harrisii]
Length = 800
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 400 EVTVDTQVDALIEAVKERLEFG------AETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
E TV+T + I KE +F RTMVFAN++D + +T +L E
Sbjct: 507 EATVETLTETKIHCDKEEKDFYLYYFLLQYPGRTMVFANSIDCIKRLTALLSILEQEPLP 566
Query: 454 YHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H ++ ++R K L F E+ GV + TD AARG+DIP+V HVI ++ ++HR G
Sbjct: 567 LHANMHQKQRLKNLERFAERDNGVLLSTDVAARGLDIPDVQHVIHYQVPRTSEIYVHRSG 626
Query: 513 RTARAGQYGL 522
RTARA + GL
Sbjct: 627 RTARAAKEGL 636
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 60/244 (24%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLV 140
D WK L + + ++RAL + GF P+ +QA ++ P + D++ AAETGSGKT ++ +
Sbjct: 203 DVSAWKDLFVPEPVLRALSSLGFSAPTPIQALALAPAIRDNLDILGAAETGSGKTLAFAI 262
Query: 141 PLI--------------------EKLCTALGDSENSNSDKEPTPPRAPS----------- 169
P+I E L A G S++ N +K+ P +PS
Sbjct: 263 PMIHSVLRWQEEQEQAGGHSEDGESLGDANGSSDDGNEEKDGDPSHSPSDEKESADIELE 322
Query: 170 ------------------LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG----- 206
LVL P L QV +A++ G ++ + GG
Sbjct: 323 LEEEKPTGHSNRSSPLLGLVLTPTRELAVQVKHHIDAVAKFTG---IKTALLVGGMAPQK 379
Query: 207 -QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
Q +P+++++TP L I ++ + + +R ++ +V DEAD ++ ++ +L
Sbjct: 380 QQRMLTRRPEIVIATPGRLWELIK-EQHQHLSNLRQLRCLVIDEADRMVERGHFTELTQL 438
Query: 266 INMF 269
+ M
Sbjct: 439 LEML 442
>gi|389641713|ref|XP_003718489.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|374095422|sp|A4REU9.2|MAK5_MAGO7 RecName: Full=ATP-dependent RNA helicase MAK5
gi|351641042|gb|EHA48905.1| ATP-dependent RNA helicase MAK5 [Magnaporthe oryzae 70-15]
gi|440476884|gb|ELQ58053.1| ATP-dependent RNA helicase mak5 [Magnaporthe oryzae P131]
Length = 760
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
FAA A + G+ D W+ LGLS+ ++ ++ F +P+ +QAA++ +L+
Sbjct: 171 FAALAEIDETDEGA-------DVSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILA 223
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN-SDKEPTPPRAPSLVLCPNVVLC 179
G DVV A TGSGKT ++ +P++EK + +++ ++ E P A LVL P L
Sbjct: 224 GHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIA--LVLSPTRELA 281
Query: 180 EQVV-RMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRR 233
Q+ + N + P V +V GG Q + K D++V TP L + +
Sbjct: 282 HQLTDHIKNLCAGLATSPYV--CSVTGGLSVHKQQRQLEKADIVVGTPGRLWEVLSSSTK 339
Query: 234 RRMEFVRGVKYVVFDEADMLLC-GSFQN 260
F RG+K++V DEAD LL G F++
Sbjct: 340 LIQAF-RGIKFLVVDEADRLLSEGHFKD 366
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK----GGVFVC 479
T RT+VF N++ +V +T +L+ + H + + R +++ F + +
Sbjct: 477 TQRTLVFTNSISSVRRLTPMLQQLTLPVIALHSQMIQKARLRSVERFTSSKPGSASILIA 536
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
TD AARG+DI + VI +A ++HR GRTARA GL
Sbjct: 537 TDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARADSSGL 579
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K KQ +F +AT+P + + KQ D I N + +
Sbjct: 167 DIERIFKMTPPKKQTLFFSATMPPEITR----LTKQFLRDPVRIEVARPATTNANITQLL 222
Query: 399 IEV-TVDTQVDAL-IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++V + D + L + A+ E+ G ET +VF N V V K LK G + H
Sbjct: 223 VKVPSSDPKAKRLALRALIEKA--GIETG--IVFCNRKTEVDIVAKSLKVHGYDAAPIHG 278
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
DL +R KTL +F+ + V +D AARG+DIP VSHV D A D++HR+GRT
Sbjct: 279 DLDQTQRMKTLADFRSGALKILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTG 338
Query: 516 RAGQYGLVTSLYTESN 531
RAG+ G+ L T ++
Sbjct: 339 RAGRTGITYMLVTPAD 354
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 22/188 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS ++A+ ++G+ + +QA ++ L+G+DV+ A+TG+GKT ++ +PLI++
Sbjct: 4 FTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + PRA LV+ P L +QV A+ G L A+ + G
Sbjct: 64 LQSGRAKARM---------PRA--LVIAPTRELADQVA--ASFEKYAKGTKLSWALLIGG 110
Query: 206 GQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
K DV+++TP LL++ + R + GV+++V DEAD +L F
Sbjct: 111 VSFGDQEKKLDRGVDVLIATPGRLLDHFE----RGKLLMTGVQFLVVDEADRMLDMGFIP 166
Query: 261 QVIRLINM 268
+ R+ M
Sbjct: 167 DIERIFKM 174
>gi|221131953|ref|XP_002164829.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Hydra
magnipapillata]
Length = 674
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E D ++ L+E + G + ++T++F T +T+ L+ G C H D S
Sbjct: 334 EYEKDRKLVKLLEEI-----MGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKS 388
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
ER L F+ K + + TD A+RG+DIP+++ V+ D+ S D++HR+GRTARAG
Sbjct: 389 QPEREWVLKEFRSGKAPILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAG 448
Query: 519 QYGLVTSLYTESN 531
G + +T +N
Sbjct: 449 NTGTAYTFFTSAN 461
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L + D + AL F P+ +Q+ LSG+++V A+TGSGKT S+++P +
Sbjct: 107 SFDELCIPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLPAV- 165
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + N P LVLCP L QV +A VR+ +
Sbjct: 166 ---IHINNQPPLNQGDGPI-----CLVLCPTRELAIQVQSVAGQFGLTT---RVRSTCIY 214
Query: 205 GG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG +G I +++V+TP L++ I+ R++ R V Y+V DEAD +L F
Sbjct: 215 GGASKGPQIRDLERGSEIVVATPGRLIDLIEI---RKISLKR-VTYLVLDEADRMLDMGF 270
Query: 259 QNQVIRLINMFRFDEKQL 276
+ Q+ ++I+ R D + L
Sbjct: 271 EPQIRKIIDQIRPDRQVL 288
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|196003292|ref|XP_002111513.1| hypothetical protein TRIADDRAFT_55608 [Trichoplax adhaerens]
gi|190585412|gb|EDV25480.1| hypothetical protein TRIADDRAFT_55608 [Trichoplax adhaerens]
Length = 506
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 451 CYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
C HKD+ +E R + L F + + TD A+RG+DIPNV+ VIQ DFA SAVD+LH
Sbjct: 369 CGILHKDIPIEVREEILNKFINGDIPILITTDIASRGLDIPNVTAVIQYDFALSAVDYLH 428
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
R GRTAR+G G S+ TE++ LV+ IR
Sbjct: 429 RAGRTARSGNEGQFFSMATENDSFLVEAIR 458
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
Length = 491
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGV 476
L A + T+VF T A+ L T G C C H D + ER + L +F+ + +
Sbjct: 284 LNASAPDTLTLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGEREQALHSFRTARMPI 343
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVD 536
V T AAR +DIPNV HV+ D +++HR+GRT + G GL TS + E NR+L +
Sbjct: 344 LVATAVAARSLDIPNVKHVVNFDMPADIEEYVHRIGRTGKVGNLGLATSFFNERNRNLCN 403
Query: 537 TI 538
+
Sbjct: 404 DL 405
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
LS+ + +E + + +P+ VQ ++ +LS +D++ A+TGSGKT ++L+P+++ +
Sbjct: 39 LSEIIQLNVELTHYSKPTPVQKHALPIILSKRDLMACAQTGSGKTAAFLIPILDLVFQQG 98
Query: 151 GDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
S+S + P+ LVL P L Q+ A S + VR V GG
Sbjct: 99 CPRPPSDSRYSGRRKQYPTALVLGPTRELAVQIFEEARKFSYRS---RVRPCVVYGGADI 155
Query: 210 PIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
D ++V+TP L++ ++ R + GV+Y+V DEAD +L F+ Q+
Sbjct: 156 GAQMRDLEHGCHLLVATPGRLVDMME----RGKIGLDGVRYLVLDEADRMLDMGFEPQIR 211
Query: 264 RLI 266
R++
Sbjct: 212 RIV 214
>gi|423201201|ref|ZP_17187781.1| hypothetical protein HMPREF1167_01364 [Aeromonas veronii AER39]
gi|404617773|gb|EKB14707.1| hypothetical protein HMPREF1167_01364 [Aeromonas veronii AER39]
Length = 407
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVEEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK D + LH PR + + WI + D ++ L +K+
Sbjct: 196 EKFANEILK------DPVE---LHAEPPRSERRPITQWIHLADDAAHKLALLTHILKD-- 244
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
ET + ++F T + + ++ L+ AGI C ++ +R +++ F E F
Sbjct: 245 ---PETQKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L RAL GF RP+ +Q + P L G+D++ +A TG+GKT S+L+P ++
Sbjct: 4 SFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R L+L P L QV A AL+A + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LILTPTRELALQVTAHAKALAAHTN---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEK 286
F V R++ R+ + + + + +G+EK
Sbjct: 166 FIKDVNRIVEEARYRKHTMLFSATLEGAGLEK 197
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQSAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|442570095|sp|Q1DZK8.2|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3
gi|392871537|gb|EAS33450.2| ATP-dependent RNA helicase DBP3 [Coccidioides immitis RS]
Length = 515
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q I AT PI + A + K P I + N R+K+ +EV + D
Sbjct: 277 QKRQTIMFTATWPIGVRNLAASFTKN--PVTVTIGDSSDIRANKRIKQ-MVEVLQPYEKD 333
Query: 409 A-LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ L+E ++ + G R +VF V + + + G + H D+S ER ++L
Sbjct: 334 SRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSL 393
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ + V TD AARG+DIP V V+ F + D++HR+GRT RAG GL +L
Sbjct: 394 EAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITL 453
Query: 527 YTESNRDL 534
+TE ++ L
Sbjct: 454 FTERDKAL 461
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QA S +G+D++ AETGSGKT ++ +P + ++ + NS + +P
Sbjct: 119 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVL----ELNNSETSCKPC 174
Query: 164 PPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVS 219
+L++ P V + +Q++R ++A+ D G + + Q I V+++
Sbjct: 175 -----ALIITPTRELAVQIYDQLLRFSSAV--DVGIACIYGGSPKDHQRREIRNASVVIA 227
Query: 220 TPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
TP L + + + + GVKY+V DEAD +L F+ +
Sbjct: 228 TPGRLKDF----QADQTINLSGVKYLVLDEADRMLDKGFEQDI 266
>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 496
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D RV K ++Q +F +AT+P P+ ++ +LH NP R++
Sbjct: 166 DIERVCKLVPFTRQTLFFSATMP---------------PEITRLTEAFLH--NPIRIEVA 208
Query: 398 WIEVTVDTQVDALI---------EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
T T AL+ E ++ + +VF N V + + L G
Sbjct: 209 RASTTASTIRQALVASRGHADKRETLRNLIRGAENLKNAIVFCNRKRDVAILHRSLVKHG 268
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D+ R +L F+ + VC+D AARG+DIP+VSHV D T + D+
Sbjct: 269 FPAGALHGDMDQLARMASLDAFKNGDVAILVCSDVAARGLDIPDVSHVFNFDVPTHSEDY 328
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+HR+GRT RAG+ G+ ++ TE + +D I+
Sbjct: 329 VHRIGRTGRAGRSGVAMTIVTEDDTKYIDQIQ 360
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 30/222 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGLS +++ A++ SG+ P+ +QA ++ P L G+D++ A+TG+GKT ++ +P++
Sbjct: 1 MTFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSAD---NGEPLVR 199
+L E + R P +L+L P L QV A+ N L+
Sbjct: 61 SRL-------EQGRARA-----RVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIG 108
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + + DV+++TP LL+ D R + G++ +V DEAD +L F
Sbjct: 109 GVSFGDQEAKIMRGADVLIATPGRLLDFFD----RGKLLLTGIEILVIDEADRMLDMGFI 164
Query: 260 NQVIRLINMFRFDEK----------QLSRMNESGVEKPLEMD 291
+ R+ + F + +++R+ E+ + P+ ++
Sbjct: 165 PDIERVCKLVPFTRQTLFFSATMPPEITRLTEAFLHNPIRIE 206
>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 441
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 40/208 (19%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
SS + FAD LGL++ L+RAL+ +G+ P+ +QA ++ VL G D++ AA+TG+G
Sbjct: 2 SSVSSFAD-------LGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTG 54
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------- 182
KT + +P++++L T +++P PRA L+L P L QV
Sbjct: 55 KTAGFTLPILQRLTTG------QTPERKPGRPRA--LILTPTRELAAQVHDSVRTYGRHL 106
Query: 183 -VRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241
++ N P ++A+ G D++V+TP LL++ K + G
Sbjct: 107 SLKSMTIFGGVNMNPQIKALR---------GPMDIVVATPGRLLDHAGQK----TIDLSG 153
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLINMF 269
V+ +V DEAD +L F + RLI +
Sbjct: 154 VEILVLDEADRMLDMGFIRDIRRLIGLM 181
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + + L G+ H + S R K L F+ V V TD AA
Sbjct: 251 QVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVLVATDIAA 310
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
RG+DI + V+ + D++HR+GRT RAG G SL L+ I R
Sbjct: 311 RGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKLLKGIER 366
>gi|427794033|gb|JAA62468.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 1111
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 19/195 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W G+S +++ L+ GF +P+ +QA ++ V+SG+D++ A+TGSGKT ++L+P+
Sbjct: 417 WAQCGVSKKVLELLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFRH 476
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ D D P ++++ P L Q+ + + G +R V V G
Sbjct: 477 IL----DQPPLEDDDGPI-----AVIMTPTRELAMQITKDCKKFTKSLG---LRVVCVYG 524
Query: 206 GQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G D +IV TP +++ + R F R YVV DEAD + F+
Sbjct: 525 GTGISEQIADLKRGAEIIVCTPGRMIDMLAANNGRVTNF-RRTTYVVLDEADRMFDMGFE 583
Query: 260 NQVIRLINMFRFDEK 274
QV+R+I+ R D +
Sbjct: 584 PQVMRIIDSIRPDRQ 598
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
+VF + + + K L A H + +R T+V+F+ K GV + T AARG
Sbjct: 666 IVFVDKQEHADILLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKVGVLIATSVAARG 725
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVDTIRRAAKLG 545
+D+ ++ V+ D D++HR GRT RAG G + TE R D I+ G
Sbjct: 726 LDVKHLILVVNFDCPNHYEDYVHRCGRTGRAGNKGYAYTFITEDQGRYTADVIKALELSG 785
Query: 546 QPV 548
P+
Sbjct: 786 NPI 788
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 42/274 (15%)
Query: 73 GSSDTFFAD--DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
GSS+ A+ + T+K LG+++ L A + G+ P+ +Q ++ L G+D++ AET
Sbjct: 12 GSSEPKEAEVQETKTFKDLGVTEVLCDACDQLGWKTPTKIQIEAIPMALEGRDIIGLAET 71
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190
GSGKT ++ +P++ L TP R +LVL P L Q+ AL
Sbjct: 72 GSGKTGAFALPILNALL--------------ETPQRFFALVLTPTRELAFQISEQFEALG 117
Query: 191 ADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244
+ G V + GG Q + KP VI++TP L+++++ + + R +KY
Sbjct: 118 SSIG---VECAVIVGGIDSMSQSLALAKKPHVIIATPGRLIDHLENTKGFNL---RALKY 171
Query: 245 VVFDEADMLLCGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSS 294
+V DEAD +L F+ +V +++ + D K++ ++ + ++ P++ SS
Sbjct: 172 LVMDEADRILNMDFETEVDKILKLIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 231
Query: 295 LTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328
Q E LQ Y+ F+ V L E
Sbjct: 232 ----KYQTVEKLQQYYLFIPSKFKDSYLVYILNE 261
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 268 MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 328 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRI 379
>gi|427793119|gb|JAA62011.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 1147
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 19/195 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W G+S +++ L+ GF +P+ +QA ++ V+SG+D++ A+TGSGKT ++L+P+
Sbjct: 419 WAQCGVSKKVLELLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFRH 478
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ D D P ++++ P L Q+ + + G +R V V G
Sbjct: 479 IL----DQPPLEDDDGPI-----AVIMTPTRELAMQITKDCKKFTKSLG---LRVVCVYG 526
Query: 206 GQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G D +IV TP +++ + R F R YVV DEAD + F+
Sbjct: 527 GTGISEQIADLKRGAEIIVCTPGRMIDMLAANNGRVTNF-RRTTYVVLDEADRMFDMGFE 585
Query: 260 NQVIRLINMFRFDEK 274
QV+R+I+ R D +
Sbjct: 586 PQVMRIIDSIRPDRQ 600
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+V+F+ K GV + T AARG+D+ ++ V+ D D++HR GRT RAG
Sbjct: 736 DRDSTIVDFKAGKVGVLIATSVAARGLDVKHLILVVNFDCPNHYEDYVHRCGRTGRAGNK 795
Query: 521 GLVTSLYTESN-RDLVDTIRRAAKLGQPV 548
G + TE R D I+ G P+
Sbjct: 796 GYAYTFITEDQGRYTADVIKALELSGNPI 824
>gi|427795059|gb|JAA62981.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 1123
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 19/195 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W G+S +++ L+ GF +P+ +QA ++ V+SG+D++ A+TGSGKT ++L+P+
Sbjct: 395 WAQCGVSKKVLELLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFRH 454
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ D D P ++++ P L Q+ + + G +R V V G
Sbjct: 455 IL----DQPPLEDDDGPI-----AVIMTPTRELAMQITKDCKKFTKSLG---LRVVCVYG 502
Query: 206 GQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G D +IV TP +++ + R F R YVV DEAD + F+
Sbjct: 503 GTGISEQIADLKRGAEIIVCTPGRMIDMLAANNGRVTNF-RRTTYVVLDEADRMFDMGFE 561
Query: 260 NQVIRLINMFRFDEK 274
QV+R+I+ R D +
Sbjct: 562 PQVMRIIDSIRPDRQ 576
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+V+F+ K GV + T AARG+D+ ++ V+ D D++HR GRT RAG
Sbjct: 712 DRDSTIVDFKAGKVGVLIATSVAARGLDVKHLILVVNFDCPNHYEDYVHRCGRTGRAGNK 771
Query: 521 GLVTSLYTESN-RDLVDTIRRAAKLGQPV 548
G + TE R D I+ G P+
Sbjct: 772 GYAYTFITEDQGRYTADVIKALELSGNPI 800
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 27/191 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS + R + G+ P+ +Q S+ VLSGKD V A TGSGKT ++L+P++EK
Sbjct: 38 FQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLIPMLEK 97
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L E+S T ++VL P L Q +R A LS ++ + G
Sbjct: 98 L------KEHS------TKIGVRAVVLSPTRELAVQTLRFAKQLSKFTS---LKMALIVG 142
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G+G PDV+V+TP L++++ + +F ++ V+YVVFDEAD + F
Sbjct: 143 GEGMDQQFEAIAANPDVLVATPGRLMHHL----QEIPDFNLKAVEYVVFDEADRIFEMGF 198
Query: 259 QNQVIRLI-NM 268
Q+ ++ NM
Sbjct: 199 AEQLQEILKNM 209
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+ KN S+Q + +ATLP K + D + I + + + LK + V
Sbjct: 205 ILKNMPTSRQTLLFSATLP----KALVQFARAGLSDPELIRLDVENKISENLKMAFFTVR 260
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
+ + V+E L G +T +VFA T V + +L IE C + D+
Sbjct: 261 SLDKPALFLYMVREFLPKGEQT---IVFAATRHHVEFLHALLAANHIEASCAYGDMDQAS 317
Query: 463 RAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R L F+ +K + + TD AARGIDIP +++V+ F +A F+HRVGR ARAG+ G
Sbjct: 318 RKINLGKFRAKKTSLLIVTDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAGRSG 377
Query: 522 LVTSL 526
S
Sbjct: 378 TAFSF 382
>gi|225432238|ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
vinifera]
Length = 707
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD-----TQ 406
QY+FV ATLP+ L ++FPD + I G +H + RL+E ++ + D T
Sbjct: 486 QYLFVTATLPVGIYNK----LVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTP 541
Query: 407 VDALIEAVKERLEF--GAETSRTMVFANTVDAVYAVTKILKT-----AGIECYCYHKDLS 459
A + L+ G+ SRT+VF N ++ V +LK + +H L+
Sbjct: 542 ESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALT 601
Query: 460 LEERAKTLVNF--QEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
E R L F GV VCTD A+RGID V HV+ DF +++ RVGRT
Sbjct: 602 QESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRT 661
Query: 515 AR-AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AR AG G L I K G P+
Sbjct: 662 ARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPL 696
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 44 RVRFLRLNQWK-GRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKS---LGLSDRLIRAL 99
RV L W G R F + + G ++ D + KS LG SD +I +L
Sbjct: 256 RVSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESL 315
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL----CTALGDSEN 155
F RPS +QA + V+ GK +IA ++GSGKT +YL+P+I++L LG S
Sbjct: 316 RGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSA 375
Query: 156 SNSDKEPTPPRAPSLV-LCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGW 209
P +V L P L QV+ ++S G P R++A GG Q
Sbjct: 376 G----------CPQVVILVPTAELASQVLSNCRSISK-FGAPF-RSMAATGGFRQRTQLE 423
Query: 210 PIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + DV+++TP + I + + ++ V DE D+LL
Sbjct: 424 NLQQDLDVLIATPGRFMFLI----KEGFLQLTNLRCAVLDEVDILL 465
>gi|375107094|ref|ZP_09753355.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374667825|gb|EHR72610.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 457
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ L+ AL+ +G+ P+ VQAA++GP L+G+D++++A+TGSGKT ++++P +++
Sbjct: 28 FAQLGLAKELLFALDKAGYTEPTPVQAAAIGPALAGRDLLVSAQTGSGKTAAFVLPALQR 87
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ A D + + PR LVL P L +QV + A++ G +R ++ G
Sbjct: 88 ILEARRDPAQRRPKGQVSGPRV--LVLAPTRELAQQVTQA--AVTYGRGVQGLRVASLVG 143
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G + G D++++TP L++ + + V+ +V DEAD +L F
Sbjct: 144 GVPYHAQLKALRGPLDILIATPGRLMDLMGSGS----AVLASVQTLVLDEADRMLDMGFI 199
Query: 260 NQV 262
+ +
Sbjct: 200 DDI 202
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--VFVCTDAA 483
+ +VF T V L G H + R + L N G V V TD A
Sbjct: 280 QAVVFTATQRDADEVADKLAQIGHAVAALHGGMPQGRRTRVL-NALRMGHLRVLVATDVA 338
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
ARGID+P ++HVI A D++HR+GRT RAG+ G+ +L + +V I R
Sbjct: 339 ARGIDVPGITHVINHGLPMKAEDYVHRIGRTGRAGRNGMAITLAERRDTGMVRRIER 395
>gi|350399327|ref|XP_003485490.1| PREDICTED: ATP-dependent RNA helicase p62-like [Bombus impatiens]
Length = 519
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L + ++E E +T++F T V ++TK ++ +G C H D S ER L
Sbjct: 332 LQDLLQEISNVSPEGGKTIIFVETKKKVESITKTIRRSGWPAVCIHGDKSQLERDFVLTE 391
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + V TD AARG+D+ +V +VI D+ TS+ D++HR+GRT R+ G + +T
Sbjct: 392 FRRNKDSILVATDVAARGLDVDDVKYVINFDYPTSSEDYIHRIGRTGRSNNSGTSYAFFT 451
Query: 529 ESN----RDLVDTIRRAAKLGQP 547
N + L++ ++ A ++ P
Sbjct: 452 PQNSRQAKGLINVLKEAKQVINP 474
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 29/194 (14%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
D +++ + GF P+ +QA +SG+++V A+TGSGKT Y++P I +
Sbjct: 107 FPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGQNMVGIAQTGSGKTLGYILPAI----VHI 162
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
+ N P +LVL P L +Q+ ++ VR+ + GG P
Sbjct: 163 SSQQPLNHGDGPI-----ALVLAPTRELAQQIQKVTYNFG------YVRSTCIFGGA--P 209
Query: 211 IGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G ++ ++TP L++ ++ R + +R Y+V DEAD +L F+ Q+
Sbjct: 210 KGSQARDLEQGVEICIATPGRLIDFLE----RGITNLRRCTYLVLDEADRMLDMGFEPQI 265
Query: 263 IRLINMFRFDEKQL 276
++I R D + L
Sbjct: 266 RKIIEQIRPDRQVL 279
>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 468
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 27/191 (14%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+VT+++L L ++RALE +G+ P+ +QA ++ VL+G D++ +A+TG+GKT ++ +P
Sbjct: 2 SVTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPA 61
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPL-VRA 200
+ L D P+ R P LVL P L QV N + G+ + R
Sbjct: 62 LNLLA-----------DIHPSKSRGPRILVLTPTRELAAQV----NDAARKYGKFMRART 106
Query: 201 VAVCGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V++ GG +P + +P D++V+TP LL++++ R R++ R ++ ++ DEAD +L
Sbjct: 107 VSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHME---RGRIDMSR-LQMLILDEADRML 162
Query: 255 CGSFQNQVIRL 265
F + R+
Sbjct: 163 DMGFMPDIERI 173
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG- 474
E L + ++ +VF +T + + L AG + H D++ R +TL +
Sbjct: 238 EHLLIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDV 297
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
V V TD AARGID+ ++HVI D A D++HR+GRT RAG G+ S + ++R
Sbjct: 298 RVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQ 357
Query: 535 VDTI 538
+ I
Sbjct: 358 LRKI 361
>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108869558|gb|EAT33783.1| AAEL013950-PA [Aedes aegypti]
Length = 495
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 38/245 (15%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
++KNG++D+ + +W+ +GL D L A + PS +Q ++ L GKDV+ A
Sbjct: 44 NNKNGNADS--EEKQASWEDMGLIDTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLA 101
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
ETGSGKT ++ +P+++ L EN P R +++L P L Q+ A
Sbjct: 102 ETGSGKTGAFALPILQALL------EN--------PQRYFAVILTPTRELAYQISEQFEA 147
Query: 189 LSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L A G ++ + GG Q + KP +I++TP L+++++ + + + V
Sbjct: 148 LGASIG---IKCCVIVGGMDMVSQALHLARKPHIIIATPGRLVDHLENTKGFNL---KAV 201
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDN 292
KY+V DEAD +L F+ ++ +++ + F F K++ ++ + ++ P++++
Sbjct: 202 KYLVMDEADRILNLDFEVELEKILKVIPRERRTFLFSATMTKKVKKLERASLKDPVKVEV 261
Query: 293 SSLTQ 297
SS Q
Sbjct: 262 SSKYQ 266
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 300 MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILISTDVASRG 359
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 360 LDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRI 411
>gi|260944756|ref|XP_002616676.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
gi|238850325|gb|EEQ39789.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
Length = 598
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGS 132
S+ + DD W+S L RL++A+++ GF P+++Q++++ L K D++ + TGS
Sbjct: 4 SASAAYLDDTSKWESFNLDPRLLQAIDHLGFKYPTLIQSSAIPLALEEKRDIIAKSSTGS 63
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN----VVLCEQVVRMANA 188
GKT +Y +P+++ + + +E S P R S +C +V C N
Sbjct: 64 GKTAAYCIPILQNIISTENSNEKSVKSIILVPTRELSSQVCQFLESLLVYCNHKFSAVN- 122
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
LS++ E +++++ V KPD+IVSTPA L+ ++ M + V+ +V D
Sbjct: 123 LSSNVSEQVLKSLLV--------NKPDIIVSTPAKLIEVLEQNVNTNMIDLSKVRSLVID 174
Query: 249 EADMLLCGSFQNQVIRL 265
E D++L + + +L
Sbjct: 175 EVDLVLSYGYMEDLQQL 191
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RG+D NV+ V+ D T++ ++HRVGRTARAG+ G+ S
Sbjct: 389 GVSRGVDFRNVACVLNFDLPTTSRAYIHRVGRTARAGKAGMALSF 433
>gi|340370804|ref|XP_003383936.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Amphimedon queenslandica]
Length = 545
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ + L R+++A+ G+G+P+ +Q +V ++ GKD+V+ A+TGSGKT SY +PLI+K
Sbjct: 3 FDEMNLDPRIVKAVRKLGWGQPTPIQEKAVPLIMEGKDLVVKAKTGSGKTASYALPLIQK 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL----CEQVVRMANALSADNGEPLV-RA 200
+ S S K PP +LVL P+ L Q+ + S D V ++
Sbjct: 63 ILEL-----QSTSIK--VPPSVKALVLVPSQELSLQAAAQIKELCTCCSRDIKVVCVSQS 115
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
AV + + PDV+V TP+ +L+++ K + + +V+FDEAD+L ++
Sbjct: 116 NAVSSQRTVLLECPDVVVGTPSRILSHLSGK---SLLLTESLHFVIFDEADLLFSYGYEE 172
Query: 261 QVIRLINMF 269
+ +++
Sbjct: 173 DINNIVSFL 181
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
RL + I+ D + + +K +L G ++++F N + Y + L+ I+
Sbjct: 224 RLTQYHIQCLEDDKFLLIYSLLKLKLIRG----KSLIFVNDITRCYKLKLFLEQFFIKSC 279
Query: 453 CYHKDLSLEERAKTLVNF-QEKGGVFVCTD--------------------AAARGIDIPN 491
+ +L R + F ++ + TD +RGID
Sbjct: 280 VLNSELPHNSRCHVIEQFNRDIYDYIIATDELVDHTHQTKKKKKGQDKEYGVSRGIDFQG 339
Query: 492 VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
V +V+ DF ++ ++HRVGRTAR YG + + S
Sbjct: 340 VVNVVNFDFPPNSKAYIHRVGRTARGNDYGTALTFVSPS 378
>gi|283854609|gb|ADB44900.1| DEAD(Asp-Glu-Ala-Asp) box polypeptide 5 [Macrobrachium nipponense]
Length = 540
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E+ DT++ L+ + + + +T++F T V VT+ L++ G C H D S
Sbjct: 328 EIEKDTKLRQLLNEMAQEKAY-----KTIIFIETKRKVEEVTRGLRSTGWPAMCIHGDKS 382
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ER L F+ + + V TD AARG+D+ +V VI D+ + + D++HR+GRT R+
Sbjct: 383 QQERDWVLSEFRSGRAPILVATDVAARGLDVDDVKFVINYDYPSCSEDYVHRIGRTGRSD 442
Query: 519 QYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T N +DL+D ++ A ++ P
Sbjct: 443 KTGTAYTFFTADNCKQAKDLIDVLKEANQVVNP 475
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 39/210 (18%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
+F D N D ++ + G+ P+ +QA L G+D V A+TGSGKT
Sbjct: 101 YFTDYN-------FPDYVMAEIRRQGYEIPTPIQAQGWPISLQGRDFVGIAQTGSGKTLG 153
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNG 194
Y++P I + + +P R +LVL P L +Q++ ++ +
Sbjct: 154 YILPAIVHI------------NHQPYLERGDGPIALVLAPTRELAQQILTVSQDFGTSSK 201
Query: 195 EPLVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+R+ V GG P G ++ ++ P L++ ++ + +R Y+V
Sbjct: 202 ---IRSTCVFGGA--PKGPQIRDLERGVEICIAIPGRLIDFLEASKTN----LRRCTYLV 252
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F+ Q+ ++++ R D + L
Sbjct: 253 LDEADRMLDMGFEPQIRKIVDQIRPDRQTL 282
>gi|423198248|ref|ZP_17184831.1| hypothetical protein HMPREF1171_02863 [Aeromonas hydrophila SSU]
gi|404630472|gb|EKB27149.1| hypothetical protein HMPREF1171_02863 [Aeromonas hydrophila SSU]
Length = 407
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVEEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK D + LH PR + + W+ + D ++ L+ +K
Sbjct: 196 EKFASEILK------DPVE---LHAEPPRSERRPITQWVHLADDAAHKLALLVHILK--- 243
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
+ET + ++F T + + ++ L+ AG+ C ++ +R +++ F E F
Sbjct: 244 --NSETQKAIIFVKTRERLAELSGQLQAAGVPCAWIRGEMEQAKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 28/212 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L+ L RAL GF RP+ +Q + P L G+D++ +A TG+GKT ++L+P ++
Sbjct: 4 SFDDFDLNPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R LVL P L QV A AL+A + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LVLTPTRELALQVTAHAKALAAHTN---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEK 286
F V R++ R+ + + + + +G+EK
Sbjct: 166 FIKDVNRIVEEARYRKHTMLFSATLEGAGLEK 197
>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
Length = 449
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 101/188 (53%), Gaps = 24/188 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S L R+++ +E GF + + VQ ++ L +D+++ A TGSGKT +++VP+++
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T + NS + +L+L P L +Q+++ AL+ G +++ + G
Sbjct: 62 LLTH--KAPNSGTR---------ALILVPTRELAKQLLKQCQALAKFTG---IQSGMITG 107
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GQ + P++I++TP L++++ K+ + + V+Y + DEAD +L F+
Sbjct: 108 GQEFKFQAALFRKNPEIIIATPGRLIDHLKQKK----DLMEDVEYFILDEADRMLDMGFE 163
Query: 260 NQVIRLIN 267
V+ + N
Sbjct: 164 EDVLTIAN 171
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 8/190 (4%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q + +ATL G K V+KQ+ D + I + + +++ ++ D ++
Sbjct: 180 QTLLFSATLQQRGLK---HVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRIL 236
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + ++F NT + L +E H D++ +ER + +
Sbjct: 237 TWLLSNEEY----RQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMR 292
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+ V V TD AARG+DI ++ VI D A S D++HR+GRT RA G SL +
Sbjct: 293 NGRFKVLVATDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHT 352
Query: 531 NRDLVDTIRR 540
+L I R
Sbjct: 353 EWNLKAAIER 362
>gi|365990357|ref|XP_003672008.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
gi|343770782|emb|CCD26765.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
Length = 608
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 108/201 (53%), Gaps = 24/201 (11%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAE 129
KN +S+ + DD+ T++S L RL++A+++ GF P+++Q+ ++ L K D++ A
Sbjct: 3 KNTASEAYI-DDSTTFESFQLDSRLLQAIKSFGFHHPTLIQSTAIPLALQQKRDIIAKAA 61
Query: 130 TGSGKTHSYLVPLIEKLC----TALGD---SENSNSDKEPTPPR----APSLVLCPNVVL 178
TGSGKT SYLVP+IE + T +G+ ENS P R + VL ++
Sbjct: 62 TGSGKTLSYLVPVIETILDYKKTRVGNDIIEENSTLGIILVPTRELAHQVATVLEQMILF 121
Query: 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF 238
C +R N +S+D ++ ++ +P++I+STP L+N ++ K
Sbjct: 122 CSNDIRYLN-ISSDISNSVLSSLLT--------NRPEIIISTPGKLMNVLETKITSIT-- 170
Query: 239 VRGVKYVVFDEADMLLCGSFQ 259
+ +K++V DE D++L +Q
Sbjct: 171 LEDLKFLVIDEVDLVLTFGYQ 191
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL------YTESNRDLV 535
+RG+D NV+ V+ D T+A ++HR+GRTARAG+ G S Y + +
Sbjct: 394 GVSRGVDFKNVACVLNFDLPTTAKSYIHRIGRTARAGKSGTAISFVVPLKEYGKHKPSMC 453
Query: 536 DTIRRAAKL 544
T +R K+
Sbjct: 454 QTTKRDEKI 462
>gi|388583305|gb|EIM23607.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 605
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 24/206 (11%)
Query: 68 VSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
+SD S ++F D++ L RL+RAL + GF RP++VQA +V L+GKD++
Sbjct: 1 MSDIRESEESFAKFDHL------LDKRLLRALADLGFARPTLVQAKAVPLALNGKDILAR 54
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187
A+TGSGKT +YL+P+ +K+ D + + P +L+L P L EQV
Sbjct: 55 AKTGSGKTLAYLLPIAQKVLAEKDDGD--------SKPETRALILVPTRELSEQVSSHLK 106
Query: 188 ALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241
+L + + + + G KPD+++STP+ L+ ++ K +
Sbjct: 107 SLLKYSQKEVSQVNLAGSGTDNKFQRLLLSDKPDIVISTPSRLIGHLQSKSLS----LST 162
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLIN 267
+K + DEAD++L + V L++
Sbjct: 163 LKTLAIDEADLILSYGHADDVKALLS 188
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+RGID +V+ VI D ++ + HRVGRTARAG+ G+
Sbjct: 408 SRGIDFVDVACVINFDLPKNSSSYTHRVGRTARAGRSGI 446
>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
CD36]
gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
CD36]
Length = 667
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 378 KDRQTLMFSATFPRDIQMLARDFLK----DYIFLSVGRVGSTSENITQKILYVEDDEKKS 433
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+++ + E T+VF T + L G H D S ER K L
Sbjct: 434 VILDLLSAN-----ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALA 488
Query: 469 NFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ + V T AARG+DIPNVSHVI D + D++HR+GRT RAG G+ T+ +
Sbjct: 489 AFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFF 548
Query: 528 TESNRDLV 535
+N+++V
Sbjct: 549 NRNNKNIV 556
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI-EKLCTA 149
L + L+ ++ S F +P+ VQ SV V +G+D++ A+TGSGKT +L P++ E
Sbjct: 194 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 253
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
SN +LV+ P L Q+ + S VRA V GG
Sbjct: 254 PAPVPESNGAFSSHKVYPTTLVMAPTRELVSQIYEESKKFSY---RSWVRACVVYGGAD- 309
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
IG+ D++V+TP L + +D R + ++Y+V DEAD +L F+ Q
Sbjct: 310 -IGQQMRNMDRGCDLLVATPGRLKDLLD----RGKVSLANIRYLVLDEADRMLDMGFEPQ 364
Query: 262 VIRLIN 267
+ +++
Sbjct: 365 IRYIVD 370
>gi|410077537|ref|XP_003956350.1| hypothetical protein KAFR_0C02220 [Kazachstania africana CBS 2517]
gi|372462934|emb|CCF57215.1| hypothetical protein KAFR_0C02220 [Kazachstania africana CBS 2517]
Length = 511
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP 377
E D +E EE IK+ + R ++Q + AT P ++ A ++ P
Sbjct: 249 EADRMLEKGFEEDIKNIIKETNGNRA------NRQTLMFTATWPKEVRELASTFMRD--P 300
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
I N R+ + V T+ L++ +K+ + + ++FA
Sbjct: 301 VKVSIGNRDELTANKRITQIVEVVEPHTKERKLLDLLKKYQGGAKKNDKVLIFALYKKEA 360
Query: 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVI 496
V + L+ G + H DLS ++R + L +F Q K + + TD AARG+DIPNV VI
Sbjct: 361 ARVERNLRYNGYDVAAIHGDLSQQQRTQALNDFKQGKSSLLLATDVAARGLDIPNVKTVI 420
Query: 497 QADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
F + D++HR+GRT RAGQ G+ +L+TE + L
Sbjct: 421 NLTFPLTVEDYVHRIGRTGRAGQTGVAHTLFTEQEKHL 458
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QAAS +L+GKDV+ AETGSGKT ++ VP I L S+S+
Sbjct: 114 EISKFPKPTPIQAASWPYLLAGKDVIGVAETGSGKTFAFGVPAIHSLV--------SSSN 165
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
K+ LV+ P L Q+ L+ G + + GG Q + +
Sbjct: 166 KKDI----SVLVISPTRELASQIYDNLIILTDKVG---LECCCIYGGVPKDEQRKQLRRS 218
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+V+TP LL+ I + V+Y+V DEAD +L F+ + +I
Sbjct: 219 QVVVATPGRLLDLIQEGSVN----LSKVQYLVLDEADRMLEKGFEEDIKNII 266
>gi|386334065|ref|YP_006030236.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196515|gb|AEG69700.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 599
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 27/207 (13%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
+SD + +LGL +R++RAL + P+ VQA ++ LSG+D+++ ++TGSG
Sbjct: 20 NSDALNTSAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSG 79
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSD--------KEPTP-PRAPS-LVLCPNVVLCEQVV 183
KT ++++P I+++ + + +D + P P P PS LVL P L QV
Sbjct: 80 KTAAFILPAIQRISEQP-EPQRPRADGAPQRIKGRRPRPAPAKPSLLVLTPTRELALQVT 138
Query: 184 RMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235
+A G L R V ++ GG +P PD+I++TP LL++ID R
Sbjct: 139 ----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR--- 191
Query: 236 MEFVRGVKYVVFDEADMLLCGSFQNQV 262
+ + +VFDEAD +L F + +
Sbjct: 192 -IDLSALDMLVFDEADRMLDMGFADDI 217
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V T
Sbjct: 291 ASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 33/226 (14%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K ++Q +F +AT M P+ + I+ +L +++
Sbjct: 167 DIERIFKLTPFTRQTLFFSAT---------------MAPEIERITNTFLSAPV-KVEVAR 210
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSR----------------TMVFANTVDAVYAVTK 442
T +T LI +R EFGA+ R ++F N V V K
Sbjct: 211 AATTSETITQGLIWHEPKRREFGAKDKRNILRATIEAEGEKCTNAIIFCNRKVEVDIVAK 270
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVC-TDAAARGIDIPNVSHVIQADFA 501
LK G H DL R K L F+E F+C +D AARG+DIPNVSHV D
Sbjct: 271 SLKKHGYNAEPIHGDLDQSHRMKVLNGFREGEIRFLCASDVAARGLDIPNVSHVFNFDVP 330
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
A D++HR+GRT RAG+ G ++ T ++ + + K+ P
Sbjct: 331 GHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQLAAVEELVKMAIP 376
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L ++++A+ +G+ P+ +QA ++ P L GKDV+ A+TG+GKT S+ +P+I
Sbjct: 4 FSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISL 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + PR SLVL P L QV +A S + L +A+ + G
Sbjct: 64 LSKGRARARM---------PR--SLVLAPTRELAAQVAENFDAYSKYSK--LTKALLIGG 110
Query: 206 ----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
Q I + DV+++TP LL++++ R + GV+ +V DEAD +L F
Sbjct: 111 VSFKEQDKLIDRGVDVLIATPGRLLDHVE----RGKLLLTGVQIMVVDEADRMLDMGFIP 166
Query: 261 QVIRLINMFRFDEKQL 276
+ R+ + F + L
Sbjct: 167 DIERIFKLTPFTRQTL 182
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGLS+ +IR++ N GF + +Q ++ + G+D++ A+TG+GKT +Y +PLIE
Sbjct: 3 TFTDLGLSESIIRSIINMGFEETTPIQEQTIPIAMEGRDLIGQAQTGTGKTAAYGIPLIE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ G SE+ +VL P L QV A L+ + A+ +
Sbjct: 63 RIV---GQSEHIQ-----------GIVLAPTRELAVQV---AEELNKIGQYKRIHALPIY 105
Query: 205 GGQG--WPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQG W I +P +IV+TP L++++ RR+ + +K +V DEAD +L F
Sbjct: 106 GGQGIEWQIRALKKRPHIIVATPGRLMDHM----RRKTIRLNDIKILVLDEADEMLNMGF 161
Query: 259 QNQV 262
+ +
Sbjct: 162 LDDI 165
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + K +Q + +AT+P + A +++ P I + + +++ +
Sbjct: 164 DIETILKEVPEERQTLLFSATMPRQIQNIAHRFMQE--PQLISIKATGVTVSD--IEQHY 219
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+EVT + D L R+ ++VFA T V + + L G H DL
Sbjct: 220 VEVTERLKFDVL-----SRILDIQSPELSIVFARTKKRVDELAEALSKRGYSAEGIHGDL 274
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ +R L F++ V V TD AARG+DI V+HV D ++HRVGRT RA
Sbjct: 275 TQNKRDSVLRQFKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGRA 334
Query: 518 GQYGLVTSLYT 528
G+ GL +L T
Sbjct: 335 GKSGLAITLVT 345
>gi|337755348|ref|YP_004647859.1| ATP-dependent RNA helicase RhlE [Francisella sp. TX077308]
gi|336446953|gb|AEI36259.1| ATP-dependent RNA helicase RhlE [Francisella sp. TX077308]
Length = 445
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ K + Q + +AT K A + + +S + ++ ++ +K
Sbjct: 167 DLKRIHKLLPKKLQTLMFSATFSPEIKNLAS----EFLDNPQSVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ T+++ALI +K++ + + +VF+ T +++ L A I H +
Sbjct: 223 YTLDKSTKINALISLIKDQ-----DLHQVLVFSRTKHGANKISEKLNKASITSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ K V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSKDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQDGLAISLVS 348
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ V G
Sbjct: 63 LL----DQPKAQAN------RVKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVVFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNALKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + R+
Sbjct: 166 NDLKRI 171
>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
Length = 786
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 36/234 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGLS + +A+ G+ P+ +Q ++ +L+G DVV A TGSGKT ++L+P++EK
Sbjct: 26 FESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++S K P A +L+L P L Q + L + +R + G
Sbjct: 86 L--------RAHSPK----PGARALILSPTRELALQTFKFCKELGRNTD---LRITVLVG 130
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G PD++++TP L++++ + + V+YVVFDEAD L F
Sbjct: 131 GDSMETQFEQLSKNPDILIATPGRLMHHLSEVEGMSL---KSVEYVVFDEADRLFEMGFA 187
Query: 260 NQVIRLINMFR-------FDE---KQLSRMNESGVEKPL--EMDNSSLTQPDLQ 301
Q+ +++ F + L+ ++G++ PL +D + PDL+
Sbjct: 188 EQLRQILTQLHELRQTLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLK 241
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R++ +Q + +ATLP A A LK D + + +P LK +
Sbjct: 190 LRQILTQLHELRQTLLFSATLPRLLADFAKAGLK----DPLTVRLDTETKISPDLKLAFF 245
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
+ + ++ L+ ++E + + +T+VF +T V + ++LK+ GI+ + +
Sbjct: 246 TMRKEEKLACLVHLLREVV---SAEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMD 302
Query: 460 LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R + F+ K + + TD AARGIDIP + +V+ DF F+HRVGR ARAG
Sbjct: 303 QTARKINVAKFRARKTMILLVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAG 362
Query: 519 QYGLVTSLYT 528
+ G S T
Sbjct: 363 RTGTAYSFLT 372
>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 449
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 110/193 (56%), Gaps = 29/193 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++++L LS +++A++ G+ +P+ +QA S+ LSG+D++ +A+TG+GKT S+++P +
Sbjct: 1 MSFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
E+L T P+P R LVL P L QVV +A+ + VR
Sbjct: 61 ERLLT-------------PSPLRGKGPRILVLTPTRELAIQVV---DAVRSYGKFMRVRC 104
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
++ GG Q + +P D+IV+TP L++++D RR + F R ++ +V DEAD +L
Sbjct: 105 GSILGGMPYRDQMMLLAQPVDIIVATPGRLIDHLD---RRSINFSR-LEMLVLDEADRML 160
Query: 255 CGSFQNQVIRLIN 267
F + V R+ +
Sbjct: 161 DMGFSDDVDRIAD 173
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A ++ ++F+ T + L + G H D+S R KT+ N + K + V T
Sbjct: 242 ASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLLVAT 301
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D AARG+D+ +SHVI D A D++HR+GRT RAG G+ S + + +D I R
Sbjct: 302 DVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRIER 361
>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
Length = 468
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 27/191 (14%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+VT+++L L ++RALE +G+ P+ +QA ++ VL+G D++ +A+TG+GKT ++ +P
Sbjct: 2 SVTFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPA 61
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPL-VRA 200
+ L D P+ R P LVL P L QV N + G+ + R
Sbjct: 62 LNLLA-----------DIHPSKSRGPRILVLTPTRELAAQV----NDAARKYGKFMRART 106
Query: 201 VAVCGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V++ GG +P + +P D++V+TP LL++++ R R++ R ++ ++ DEAD +L
Sbjct: 107 VSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHME---RGRIDMSR-LQMLILDEADRML 162
Query: 255 CGSFQNQVIRL 265
F + R+
Sbjct: 163 DMGFMPDIERI 173
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG- 474
E L + ++ +VF +T + + L AG + H D++ R +TL +
Sbjct: 238 EHLLIAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDV 297
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
V V TD AARGID+ ++HVI D A D++HR+GRT RAG G+ S + ++R
Sbjct: 298 RVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQ 357
Query: 535 VDTI 538
+ I
Sbjct: 358 LRKI 361
>gi|146101459|ref|XP_001469120.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 924
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + ++D L++ + +G E S ++F T V + L GI H D
Sbjct: 702 VPDNEKMDRLLQII-----YGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRR 756
Query: 460 LEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
++R L +F++K + V TD A+RG+DIP+V+HV+Q D D+ HR+GRT RAG
Sbjct: 757 QQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAG 816
Query: 519 QYGLVTSLYTESNRDL-VDTIRRAAKLGQPV 548
G+ T+ Y +NR L +D + ++ GQ +
Sbjct: 817 NKGIATAFYNRNNRRLALDLHKYFSEHGQEI 847
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
+E G+ +P+ VQ + LSG D++ A+TGSGKT ++L+P+++ + G S
Sbjct: 487 IERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVH-GVSPARQR 545
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVI 217
P +LVL P L Q+ L+ + + V GG +P + D++
Sbjct: 546 KSYPI-----ALVLAPTRELAVQIFDEVRKLTFNTD---IFYDVVYGGTRYPQRFEQDIL 597
Query: 218 VSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI-----NMFRFD 272
V+ P L + + + + F +K+++ DEAD +L F+ Q+ L+ +M D
Sbjct: 598 VACPGRLRDMFNEE---YLSFS-AIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVD 653
Query: 273 EKQ 275
E+Q
Sbjct: 654 ERQ 656
>gi|297736840|emb|CBI26041.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 96/215 (44%), Gaps = 22/215 (10%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD-----TQ 406
QY+FV ATLP+ L ++FPD + I G +H + RL+E ++ + D T
Sbjct: 427 QYLFVTATLPVGIYNK----LVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTP 482
Query: 407 VDALIEAVKERLEF--GAETSRTMVFANTVDAVYAVTKILKT-----AGIECYCYHKDLS 459
A + L+ G+ SRT+VF N ++ V +LK + +H L+
Sbjct: 483 ESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALT 542
Query: 460 LEERAKTLVNF--QEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
E R L F GV VCTD A+RGID V HV+ DF +++ RVGRT
Sbjct: 543 QESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRT 602
Query: 515 AR-AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AR AG G L I K G P+
Sbjct: 603 ARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPL 637
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 44 RVRFLRLNQWK-GRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKS---LGLSDRLIRAL 99
RV L W G R F + + G ++ D + KS LG SD +I +L
Sbjct: 197 RVSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESL 256
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL----CTALGDSEN 155
F RPS +QA + V+ GK +IA ++GSGKT +YL+P+I++L LG S
Sbjct: 257 RGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSA 316
Query: 156 SNSDKEPTPPRAPSLV-LCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGW 209
P +V L P L QV+ ++S G P R++A GG Q
Sbjct: 317 G----------CPQVVILVPTAELASQVLSNCRSIS-KFGAPF-RSMAATGGFRQRTQLE 364
Query: 210 PIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + DV+++TP + I + + ++ V DE D+LL
Sbjct: 365 NLQQDLDVLIATPGRFMFLI----KEGFLQLTNLRCAVLDEVDILL 406
>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 608
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 32/226 (14%)
Query: 57 PFRGFAAAAAVVSDKNGSSDTFFADDNVTWKS---LGLSDRLIRALENSGFGRPSIVQAA 113
P G A A SD +DT A+ + LGL +R+ RAL + +P+ VQA
Sbjct: 4 PQNGSGAIAHAESD----TDTLIANAATQASAFAALGLDERIARALGELNYTQPTPVQAQ 59
Query: 114 SVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT--------ALGDSENSNSDK-EPTP 164
++ LSG+D+++ ++TGSGKT ++++P I+++ A G + + P P
Sbjct: 60 AIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQRPRADGPQQRVKGRRPRPAP 119
Query: 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDV 216
+ LVL P L QV +A G L R V ++ GG +P PD+
Sbjct: 120 AKPSLLVLTPTRELALQVT----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDI 175
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
I++TP LL++ID R + + +VFDEAD +L F + +
Sbjct: 176 IIATPGRLLDHIDSGR----IDLSALDMLVFDEADRMLDMGFADDI 217
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 291 ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 113/198 (57%), Gaps = 23/198 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+++VT+ + GL ++RAL SG+ RP+ +QAA++ V++G+DV+ AA+TG+GKT +
Sbjct: 11 ANESVTFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFS 70
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPL 197
+P+I+ L L ++ S S P R P +L+L P L +QV + ++
Sbjct: 71 LPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQVY---DNVAKYGKYTA 119
Query: 198 VRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +V DEAD
Sbjct: 120 LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRMLVLDEAD 175
Query: 252 MLLCGSFQNQVIRLINMF 269
+L F + R+IN+
Sbjct: 176 RMLDMGFLPDLQRIINLL 193
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ GI H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREGINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 117/213 (54%), Gaps = 23/213 (10%)
Query: 65 AAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDV 124
AA S ++ T + D+VT+ + GL ++RAL SG+ RP+ +QAA++ V+ G+DV
Sbjct: 67 AAFPSMNTETTSTAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDV 126
Query: 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQV 182
+ AA+TG+GKT + +P+I+ L L ++ S S P R P +L+L P L +QV
Sbjct: 127 MGAAQTGTGKTAGFSLPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQV 178
Query: 183 VRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRM 236
+ ++ +R+ V GG Q + + +++V+TP LL+++ ++R
Sbjct: 179 Y---DNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRS 231
Query: 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269
+ V+ +V DEAD +L F + R+IN+
Sbjct: 232 VNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 264
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 256 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 311
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 312 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 370
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 371 TQIERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 430
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 431 GASGDALSLFAPGDERLLADIEKLIKRNLP 460
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 121/244 (49%), Gaps = 40/244 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+TWK LG+ D L + E+ + P+ +Q ++ L GKD++ AETGSGKT ++ +P++
Sbjct: 23 LTWKDLGIVDTLCKTCEDLKWKSPTKIQCEAIPLTLEGKDIIGLAETGSGKTAAFAIPIL 82
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L EN P R +L+L P L Q+ AL + G V+ +
Sbjct: 83 QALL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCAVI 125
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L
Sbjct: 126 VGGMDMMSQALLLAKKPHILIATPGRLVDHLENTKGFNL---RSLKFLVMDEADRILNMD 182
Query: 258 FQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ 307
F+ +V +++ + + K++ ++ + + P++++ S+ Q E LQ
Sbjct: 183 FEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEKLQ 238
Query: 308 DEYI 311
Y+
Sbjct: 239 QYYV 242
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 266 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 326 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQ 379
>gi|194897631|ref|XP_001978693.1| GG17541 [Drosophila erecta]
gi|190650342|gb|EDV47620.1| GG17541 [Drosophila erecta]
Length = 559
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y +PLI
Sbjct: 9 VQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 144 EK-LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+K L + L SE S ++VL P LC Q ++ L G+ +VR
Sbjct: 69 QKILNSKLNASEQCVS----------AVVLAPTKELCRQSRKVIEQLVESCGK-VVRVAD 117
Query: 203 VCGGQGWPIG-------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+ G + +PD++V+TPA LL + + + ++ V+ +V DEAD++
Sbjct: 118 IAGSSNDTVTQRHALAERPDIVVATPAKLLAHAEAG---SVVDLKHVETLVVDEADLVFA 174
Query: 256 GSFQNQVIRLINMF 269
++ RLI
Sbjct: 175 FGYEKDFKRLIKHL 188
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ----MFPDADWISGNYLHFHNP 392
+KD++R+ K+ Q + V+ATL + + G L + + +S + L H
Sbjct: 178 EKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPEVVSQDQL-THQR 236
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
L E+ + + L +K RL G ++++F N++D Y V L+ GI
Sbjct: 237 ILAEE------NDKPAILYALLKLRLIRG----KSIIFVNSIDRCYKVRLFLEQFGIRAC 286
Query: 453 CYHKDLSLEERAKTLVNFQEKG--GVFVCTD-------------------------AAAR 485
+ +L R T+ F KG + + +D +A+R
Sbjct: 287 VLNSELPANIRIHTISQFN-KGTYDIIIASDEHHLEQPGGKSATNRKSPRSGDMESSASR 345
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GID V++VI DF ++HR GRTAR G V S + + D + +
Sbjct: 346 GIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAKVNDAVEK 400
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
G S ADD VT+ L ++ ++RA+ + G+ PS +QAA++ P+L+G DVV A+TG
Sbjct: 11 TGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTG 70
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
+GKT ++ +P++ K+ D++ +LVL P L QV A
Sbjct: 71 TGKTAAFAIPILSKIDLTSKDTQ--------------ALVLAPTRELALQVAEAFGRYGA 116
Query: 192 DNGEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
P + + + GGQ + + V+V TP ++++++ R + + Y+
Sbjct: 117 HM--PKLNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLE----RGTLDLSHLDYL 170
Query: 246 VFDEADMLLCGSFQNQVIRLI 266
V DEAD +L F V R++
Sbjct: 171 VLDEADEMLTMGFAEDVERIL 191
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + KQ +AT+P ++ + K+ D I + + ++
Sbjct: 185 EDVERILADTPEYKQVALFSATMPTTIRR----LTKKYLHDPVEIKIDAKTSTAENITQR 240
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+I+V ++DAL ++ ET M VF T A V LK G +
Sbjct: 241 FIQVAGPRKMDALTRILE------VETFEAMIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 457 DLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R +T +N + G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 295 DINQSQRERT-INALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRT 353
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRR--AAKLGQ 546
RAG+ G + R L+ I + AKL +
Sbjct: 354 GRAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAE 387
>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517186|gb|EAS19843.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 377
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 105/191 (54%), Gaps = 21/191 (10%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++SLGLS++L+ AL + F P+ +Q ++ +L+GKDV+ A+TGSGKT +Y +PL+
Sbjct: 1 MSFESLGLSNQLLFALRENQFSHPTPIQKLAMPDILAGKDVLGIAKTGSGKTMAYALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L +SEN + +L+L P L QV + S +PL+ +AV
Sbjct: 61 QRLEGI--ESENRH---------ITALILVPTRELAAQVSEVFIPYSKALTKPLI-TMAV 108
Query: 204 CGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + D++V+TP LL I+ ++ VK +V DEAD +L F
Sbjct: 109 YGGASINPQMRKMNNVDILVATPGRLLELIEANAVH----LKNVKALVLDEADKMLTKGF 164
Query: 259 QNQVIRLINMF 269
+ ++ +++ +
Sbjct: 165 KKELDQILKLL 175
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
E ++ ++F ++ V V LK GI H S R L F+ + V TD
Sbjct: 242 EMTQVLIFCSSTYQVDHVNDKLKKNGIASKAIHSKKSQGARNSALSEFKSGELTALVSTD 301
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
ARGIDI + V+ + S DF+HR+GRT RA G
Sbjct: 302 LLARGIDIEFLPFVVNYELPRSPKDFVHRIGRTGRAENPG 341
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
G S ADD VT+ L ++ ++RA+ + G+ PS +QAA++ P+L+G DVV A+TG
Sbjct: 11 TGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTG 70
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
+GKT ++ +P++ K+ D++ +LVL P L QV A
Sbjct: 71 TGKTAAFAIPILSKIDLTSKDTQ--------------ALVLAPTRELALQVAEAFGRYGA 116
Query: 192 DNGEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
P + + + GGQ + + V+V TP ++++++ R + + Y+
Sbjct: 117 HM--PKLNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLE----RGTLDLSHLDYL 170
Query: 246 VFDEADMLLCGSFQNQVIRLI 266
V DEAD +L F V R++
Sbjct: 171 VLDEADEMLTMGFAEDVERIL 191
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + KQ +AT+P ++ + K+ D I + + ++
Sbjct: 185 EDVERILADTPEYKQVALFSATMPTTIRR----LTKKYLHDPVEIKIDAKTSTAENITQR 240
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+I+V ++DAL ++ ET M VF T A V LK G +
Sbjct: 241 FIQVAGPRKMDALTRILE------VETFEAMIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 457 DLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R +T +N + G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 295 DINQSQRERT-INALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRT 353
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRR--AAKLGQ 546
RAG+ G + R L+ I + AKL +
Sbjct: 354 GRAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAE 387
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 24/200 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++++LGL+ ++RA+E+ G+ P+ +QA ++ VL GKD++ +A+TG+GKT + +P++
Sbjct: 1 MSFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
KL +A G + PPRA LVL P L QV A ++ A G+ PL AV
Sbjct: 61 HKLASA-GRGQGRR------PPRA--LVLTPTRELAAQV---AESI-ATYGKYVPLRTAV 107
Query: 202 AVCGGQGWP-IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G + P I K DV+V+TP LL+++ +R + V+ +V DEAD +L
Sbjct: 108 VFGGVKIQPQIHKLQRGVDVLVATPGRLLDHVG----QRTVDLSQVEVLVLDEADRMLDM 163
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F + + RL+N + + L
Sbjct: 164 GFIHDIRRLLNELPAERQTL 183
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV--FVCTDAA 483
+ +VF T + + L+ G++ H + S R + L +F+ KG V V TD A
Sbjct: 246 QVLVFTRTKHGANRLAEQLERDGLKTAAIHGNKSQGARTRALQDFK-KGAVRVLVATDIA 304
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
ARG+DI ++ HV+ + + D++HR+GRT RAG G SL + L+ +I R K
Sbjct: 305 ARGLDIDHLPHVVNFELPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEEYPLLRSIERLLK 364
Query: 544 LGQP 547
P
Sbjct: 365 QDLP 368
>gi|118388510|ref|XP_001027352.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89309122|gb|EAS07110.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1110
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARG 486
M+F N++ + ++ L G + +H D+ R + F+ + + +CTD A+RG
Sbjct: 336 MIFCNSIPSCRSLDYTLSEEGYDVVSFHGDIPKRLRIQNFDRFKSRESKIMICTDLASRG 395
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+D P ++HV+ DF + D+LHR GRT RAG+ G V SLY + ++++ ++++
Sbjct: 396 LDFPFLTHVVNYDFPITTSDYLHRAGRTGRAGRKGSVISLYHNKDNNIINELKKSHDNKI 455
Query: 547 PV 548
PV
Sbjct: 456 PV 457
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLS--GKDVVIAAETGSGKTHSYLVPLIEKLC 147
+ +++ +ALE+ PS +Q ++ +L+ + +AA+TG+GKT +YL+P+I
Sbjct: 65 NIHEKIKKALESQNIFTPSPIQDLAIPALLNQNHNNFFLAAQTGTGKTLAYLIPII---- 120
Query: 148 TALGDSENSNSDKEPTPPRAPS-LVLCPNVVL-------CEQVVRMAN--ALSADNGEPL 197
+ E +N ++ T P PS +++ P L C++++ A L +N +
Sbjct: 121 SQFKKLEEANHNQRLTTPNRPSIIIIVPTKELANQLEDECKKLIHFAKFTCLGVNNSKVF 180
Query: 198 VRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
+R +G DV++ TP + I+ R + F+ V Y V DEAD L
Sbjct: 181 MREKKAL-DEGV-----DVLIGTP----DRIERHREKGNLFLSNVSYFVVDEADTFLDSG 230
Query: 258 FQNQVIRLINMFRFDEKQLSRMNES 282
++ + I ++Q+ N S
Sbjct: 231 YKEVIETYIKTITHRQEQIKEGNYS 255
>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
Length = 557
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 10/205 (4%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
++ ++ +++Q + V+AT+P + +L + P+ I +Y+ + LK ++ V
Sbjct: 172 KILESIPKNRQCVLVSATMPTALASFSKVMLNE--PEVIQIDSDYIL--SETLKLTFLFV 227
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D ++ +L+ ++ + R ++F T V + KIL++ I + ++ E
Sbjct: 228 REDEKLASLLYLLRNTI---PSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQE 284
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
R L F++ K + TD AARG+DIP + +VI DF S F+HR GRTARAGQ+
Sbjct: 285 ARTMHLNTFRKNKSRALIVTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQH 344
Query: 521 GLVTSLYTESNRDLVDTIRRAAKLG 545
G SL T +RDL TI LG
Sbjct: 345 GRAFSLIT--SRDLPYTIDLCLFLG 367
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ G S +L+ +++ G+ P+ +Q +L+G+DVV A TGSGKT +++P+IE
Sbjct: 5 TFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L S + R ++L P L Q R+ L+ + A+
Sbjct: 65 RL---------GCSHSQIVGIRG--VILSPTRELALQTYRVVRKLACKTN---LVVCALT 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G PD++V+TP L ++I + VK +V DEAD L
Sbjct: 111 GGSSLDRQFESLSGNPDIVVATPGRLFHHIIEAGLSLI----AVKIIVLDEADRLFEMGL 166
Query: 259 QNQVIRLI 266
+Q+ +++
Sbjct: 167 ASQIEKIL 174
>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
Length = 537
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 14/215 (6%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + +Q + +AT P + A L D+I N N R+ +
Sbjct: 286 RKILSQIRPDRQTLMWSATWPKEVRNLAADFL------TDFIQVNIGSLDLSANHRITQI 339
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
V+ + D +++ +++ ++ + ++ ++F T +T++L+ G H D
Sbjct: 340 VEVVSEGDKRDRMLKHLEKVMDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGD 399
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HVI D+ ++ D++HR+GRT R
Sbjct: 400 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGR 459
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AG G +L+T N RDLV ++ A + P
Sbjct: 460 AGANGTAITLFTTDNAKQARDLVSVLQEAKQQIDP 494
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G +I ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 118 TFDEAGFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 177
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L V++ ++ +R V
Sbjct: 178 HI----------NAQPLLAPGDGPIVLVLAPTRELA---VQIQQEITKFGKSSRIRNTCV 224
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ R +R V Y+V DEAD +L
Sbjct: 225 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLESGRTN----LRRVTYLVLDEADRMLD 278
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++++ R D + L
Sbjct: 279 MGFEPQIRKILSQIRPDRQTL 299
>gi|398023465|ref|XP_003864894.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322503130|emb|CBZ38214.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 917
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + ++D L++ + +G E S ++F T V + L GI H D
Sbjct: 695 VPDNEKMDRLLQII-----YGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRR 749
Query: 460 LEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
++R L +F++K + V TD A+RG+DIP+V+HV+Q D D+ HR+GRT RAG
Sbjct: 750 QQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAG 809
Query: 519 QYGLVTSLYTESNRDL-VDTIRRAAKLGQPV 548
G+ T+ Y +NR L +D + ++ GQ +
Sbjct: 810 NKGIATAFYNRNNRRLALDLHKYFSEHGQEI 840
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
+E G+ +P+ VQ + LSG D++ A+TGSGKT ++L+P+++ + G S
Sbjct: 480 IERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVH-GVSPARQR 538
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVI 217
P +LVL P L Q+ L+ + + V GG +P + D++
Sbjct: 539 KSYPI-----ALVLAPTRELAVQIFDEVRKLTFNTD---IFYDVVYGGTRYPQRFEQDIL 590
Query: 218 VSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI-----NMFRFD 272
V+ P L + + + + F +K+++ DEAD +L F+ Q+ L+ +M D
Sbjct: 591 VACPGRLRDMFNEE---YLSFS-AIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVD 646
Query: 273 EKQ 275
E+Q
Sbjct: 647 ERQ 649
>gi|255070509|ref|XP_002507336.1| helicase [Micromonas sp. RCC299]
gi|226522611|gb|ACO68594.1| helicase [Micromonas sp. RCC299]
Length = 605
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 45/242 (18%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D+ TW SLGL R+++AL+ + P+ VQA ++ VLSGKDVV+ A TGSGKT +YL+P
Sbjct: 14 DHSTWASLGLDRRILKALKRKQYNAPTAVQAQAIPLVLSGKDVVVRAHTGSGKTAAYLLP 73
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA- 200
+ + +N P P ++VL P L QV + A+++ P +RA
Sbjct: 74 VAHIV------MQNHAHGALPNP---RAIVLVPTRELANQVTKEASSILCQCA-PTLRAG 123
Query: 201 ---VAVCGGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFV------RGVKYV 245
+ C + G P P+++V TPA ++ I R F G+ +
Sbjct: 124 ELPASGCAPEILREFAGAP---PEILVGTPARVVECI------RCGFFPPDALNSGLDLL 174
Query: 246 VFDEADMLLCGSFQNQV----------IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
V DEADMLL + + + + I + ++L+ M + P+++D SL
Sbjct: 175 VLDEADMLLSFGYNHDIKCIAAEVQRGCQSILLSATTNEELTGMQSLVLHNPVQLDLGSL 234
Query: 296 TQ 297
+
Sbjct: 235 NR 236
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 51/198 (25%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
+PR+ I++ D D L+ + G +T+VF + DA + L I
Sbjct: 252 SPRISHYIIKLHTD---DKLLYCMA-LFRLGLCEKKTLVFVSHSDAAIRLRLFLAKFSIS 307
Query: 451 CYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAA-------------------------- 484
C H +L RA L + GV+ C A A
Sbjct: 308 CCALHHELPYNSRAHILQEYNR--GVYDCMIAVADDISARTKKESEARDLMLDGKHLNAS 365
Query: 485 -------------------RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
RGID V VI D + A ++H++GRT R G++G +
Sbjct: 366 EEVKRFGRQKDAHKDFGVVRGIDFKQVRTVINFDVPSDASAYVHQIGRTGRGGEHGSAIT 425
Query: 526 LYTESNRDLVDTIRRAAK 543
+ S ++ I++ K
Sbjct: 426 FVSLSEVRKIEAIQQDLK 443
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
G S ADD VT+ L ++ ++RA+ + G+ PS +QAA++ P+L+G DVV A+TG
Sbjct: 11 TGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTG 70
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
+GKT ++ +P++ K+ D++ +LVL P L QV A
Sbjct: 71 TGKTAAFAIPILSKIDLTSKDTQ--------------ALVLAPTRELALQVAEAFGRYGA 116
Query: 192 DNGEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
P + + + GGQ + + V+V TP ++++++ R + + Y+
Sbjct: 117 HM--PKLNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLE----RGTLDLSHLDYL 170
Query: 246 VFDEADMLLCGSFQNQVIRLI 266
V DEAD +L F V R++
Sbjct: 171 VLDEADEMLTMGFAEDVERIL 191
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + KQ +AT+P ++ + K+ D I + + ++
Sbjct: 185 EDVERILADTPEYKQVALFSATMPTTIRR----LTKKYLHDPVEIKIDAKTSTAENITQR 240
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+I+V ++DAL ++ ET M VF T A V LK G +
Sbjct: 241 FIQVAGPRKMDALTRILE------VETFEAMIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 457 DLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R +T +N + G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 295 DINQSQRERT-INALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRT 353
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRR--AAKLGQ 546
RAG+ G + R L+ I + AKL +
Sbjct: 354 GRAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAE 387
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 15/214 (7%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
R++ ++Q +F +AT+P + + AG +L+ D + + R+++K I
Sbjct: 170 LRKIMAKLPANRQTLFFSATMPADVSELAGKMLR----DPLRVEVTPVSTTAERIEQKVI 225
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + L++ ++ A R++VF T V+ L+ AGIE H + S
Sbjct: 226 FVPAAEKRHVLVDLIRG----DAGMQRSIVFTRTKHGANRVSAQLEQAGIEAAAIHGNKS 281
Query: 460 LEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R K L F+ V V TD AARGID+ V+HV+ + ++HR+GRTARAG
Sbjct: 282 QNARQKALDGFRAGTVRVLVATDIAARGIDVDGVTHVVNFELPNEPETYVHRIGRTARAG 341
Query: 519 QYGLVTSLYTESN------RDLVDTIRRAAKLGQ 546
G+ SL T RD+ IR++ +G+
Sbjct: 342 ASGVAVSLCTADGDERIYLRDIEKLIRKSIPVGE 375
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +L L + AL G + +QA ++ L G+D++ A+TG+GKT ++ +P++++
Sbjct: 4 FDTLSLRPEIQAALAQLGHHTATPIQARAIPHALEGRDILGIAQTGTGKTAAFTLPILQR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P R P +L+L P L Q+ + + G L V +
Sbjct: 64 LGAA----------PSALPLRMPRALILTPTRELAVQIGE--SITNYGVGLKLSHTVILG 111
Query: 205 G-GQGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G GQG + D++V+TP LL+ + R + V+ +V DEAD +L F
Sbjct: 112 GVGQGSQVKALANGIDILVATPGRLLDLMTQGHVR----LDKVEVLVLDEADRMLDMGF 166
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++ LGL+D L+RAL + G+ P+ +QA ++ VL+G+D++ AA+TG+GKT + +P+
Sbjct: 12 DTSFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPI 71
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+++L +N ++P PR L+L P L QV A + +R+V
Sbjct: 72 LQRLL------DNPMQTRKPGRPRC--LILTPTRELTAQVEESVKAYAKYT---RIRSVL 120
Query: 203 VCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + +P D++V+TP LL+++ ++ + GV+ V DEAD +L
Sbjct: 121 IFGGVSINPQIQALRQPVDILVATPGRLLDHV----QQGTVDLSGVEIFVLDEADRMLDM 176
Query: 257 SFQNQVIRLI 266
F + + R+I
Sbjct: 177 GFIHDIRRVI 186
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + + L GIE H + S R + L F++ V V TD AA
Sbjct: 259 QVLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLVATDIAA 318
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + HV+ + D++HR+GRT RAG G SL L+ I R K
Sbjct: 319 RGLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLTGIERLIK 377
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 28/244 (11%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
AA +V S + +T A + T+KSLGL D L E + P+ +Q S+ L
Sbjct: 1 MAATVSVESAADDQKETT-AQEPATFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALE 59
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180
GKDV+ AETGSGKT ++ +P+++ L P R +L+L P L
Sbjct: 60 GKDVIGLAETGSGKTGAFALPILQDLLEH--------------PQRLFALILTPTRELAF 105
Query: 181 QVVRMANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRR 234
Q+ AL + G ++ V GG Q + KP V+V+TP L+++++ +
Sbjct: 106 QISEQFEALGSAIG---IKCAVVVGGIDMMSQALQLAKKPHVVVATPGRLVDHLENTKGF 162
Query: 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSS 294
+ R VKY+V DEAD +L F+ ++ +++ + E++ + + +K ++ +S
Sbjct: 163 NL---RSVKYLVMDEADRILNMDFEIELDKILKVIP-RERRTYLYSATMTKKVAKLQRAS 218
Query: 295 LTQP 298
L P
Sbjct: 219 LKNP 222
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T + V +L+ G+ H +S +R L F+ K + + TD A+RG
Sbjct: 266 MVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILIATDVASRG 325
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I +
Sbjct: 326 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRIEQ 379
>gi|351729630|ref|ZP_08947321.1| dead/deah box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 426
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ-MFPDADWISGNYLHFHNPRLKE 396
++ RV +Q +F +AT P + A +LK + + GN P +++
Sbjct: 168 EELTRVLALLPAQRQNLFFSATFPAAVQALADGLLKNPVRVEVPHTPGN-----EPAIEQ 222
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ I V + L VKE SR +VF T A V + L AGI +H
Sbjct: 223 RAIAVDAVRRTQLLRHLVKEH-----SWSRVLVFVATQYAAEHVAEKLYKAGIFATPFHG 277
Query: 457 DLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
LS R + L F+ E+ V V TD AARGIDI + V+ D SAVD++HR+GRT
Sbjct: 278 GLSQGARKQVLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTG 337
Query: 516 RAGQYGLVTSLYT 528
RAG+ G+ S T
Sbjct: 338 RAGESGMAVSFVT 350
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS L+ A E +GF P+ +QA ++ +L G D++ AA+TGSGKT ++
Sbjct: 3 FASLGLSPALVHAAEKAGFLAPTPIQAGAIPAILQGADLLGAAQTGSGKTAAF------- 55
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
AL + P R SLVL P L QV + +L+ +PL A+ G
Sbjct: 56 ---ALPLLQQLQLSATSGPRRVRSLVLVPTRELAAQVGEVLRSLAQHLQQPLKVAIVFGG 112
Query: 206 GQGWPI-----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
P G D++V+TP LL+ ++ R + V ++V DEAD LL F
Sbjct: 113 VSINPQMLGLRGGADIVVATPGRLLDLVEHNALR----LSAVAHLVLDEADRLLDLGFAE 168
Query: 261 QVIRLINMFRFDEKQL 276
++ R++ + + L
Sbjct: 169 ELTRVLALLPAQRQNL 184
>gi|50424613|ref|XP_460896.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
gi|74688654|sp|Q6BLM5.1|DBP9_DEBHA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49656565|emb|CAG89246.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
Length = 586
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 103/202 (50%), Gaps = 35/202 (17%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHS 137
+ DD+ TW+S GL RL++A++ GF P+++Q++++ + K D++ A TGSGKT +
Sbjct: 16 YVDDSTTWESFGLDARLLQAIDQLGFENPTLIQSSAIPLAIEEKRDIIAKASTGSGKTAA 75
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN--------------VVLCEQVV 183
Y +P+I+ L L D E T S++L P ++ C +
Sbjct: 76 YSIPIIQNL---LQD--------ESTEREIKSIILVPTRELSNQVSQFLEKLLIFCNSKI 124
Query: 184 RMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
R+ N +S++ + ++ ++ I KP++IVSTPA L+ ++ + + VK
Sbjct: 125 RLIN-ISSNLSDQVINSLL--------INKPEIIVSTPAKLIQILEKNVNSNLINLSTVK 175
Query: 244 YVVFDEADMLLCGSFQNQVIRL 265
+ DE D++L + + +L
Sbjct: 176 NLTIDEVDLVLSYGYLEDLQKL 197
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 46/147 (31%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD--- 481
+T+VF N +D Y + L+ G+ C + +L + R + + + + + TD
Sbjct: 274 KTLVFVNNIDRGYRLKLFLEQFGVRCCILNSELPINSRLNIVEQYNKNVYNLLIATDETN 333
Query: 482 ------------------------------------------AAARGIDIPNVSHVIQAD 499
+RG+D NV+ V+ D
Sbjct: 334 DFTIQEDEKDEGEEIEENKNEENDGKTSKNTKKPNQKKDKEYGVSRGVDFRNVACVLNFD 393
Query: 500 FATSAVDFLHRVGRTARAGQYGLVTSL 526
TS+ ++HRVGRTARAG+ G+ S
Sbjct: 394 LPTSSKSYIHRVGRTARAGKSGMALSF 420
>gi|348527894|ref|XP_003451454.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
[Oreochromis niloticus]
Length = 1038
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 23/196 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S +++ AL+ G+ +P+ +QA ++ ++SG+D++ A+TGSGKT ++L+P+
Sbjct: 362 TWVQCGVSMKILNALKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 421
Query: 145 KLCTALGDSENSNSDKEP-TPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ D+ P P S+++ P L Q+ + S G +R V
Sbjct: 422 HIM-----------DQRPLEESEGPISVIMTPTRELALQITKECKKFSKPLG---LRVVC 467
Query: 203 VCGGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG G I + ++IV TP +++ + R+ +R V YVV DEAD +
Sbjct: 468 VYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGA-NSGRVTNLRRVTYVVLDEADRMFDM 526
Query: 257 SFQNQVIRLINMFRFD 272
F+ QV+R+I+ R D
Sbjct: 527 GFEPQVMRIIDNVRPD 542
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVC 479
E ++F + + + K L A C H + +R + +F K G + V
Sbjct: 607 EKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDF--KNGACRLMVA 664
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
T AARG+D+ + V+ + D++HR GRT RAG G + TE I
Sbjct: 665 TSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQVRYAGDII 724
Query: 540 RAAKL-GQPV 548
+A +L G PV
Sbjct: 725 KALELSGSPV 734
>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
Length = 539
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 7/189 (3%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEKWIEVTVDTQV 407
R +Q + AT P ++ A ++ D +S GN + + +EV Q
Sbjct: 302 RDRQTLMFTATWPKEVRELASTFMR----DPVKVSIGNRDELSANKRITQIVEVIEPRQK 357
Query: 408 D-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
D L+E +++ + + ++FA V LK G + H DLS ++R
Sbjct: 358 DRKLLELLRKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSA 417
Query: 467 LVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
L +F+ K + + TD AARG+DIPNV VI F + D++HR+GRT RAGQ G +
Sbjct: 418 LNDFKAGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHT 477
Query: 526 LYTESNRDL 534
L+T++ + L
Sbjct: 478 LFTDNEKHL 486
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 22/181 (12%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +Q+ S +LSG+DV+ AETGSGKT ++ VP I++L SN D
Sbjct: 142 EISKFPKPTPIQSVSWPYLLSGRDVIGVAETGSGKTFAFGVPAIDQLV--------SNGD 193
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
+ + LV+ P L Q L+ G + V GG Q +
Sbjct: 194 AKRKSVKV--LVISPTRELASQTYDNLIILTNKVG---LECCCVYGGVPKQEQRNQLRNS 248
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
V+V+TP LL+ I+ + + V+Y+V DEAD +L F+ + +IN ++
Sbjct: 249 QVVVATPGRLLDLINEQSVD----LSQVQYLVLDEADRMLEKGFEEDIKNIINQTNSRDR 304
Query: 275 Q 275
Q
Sbjct: 305 Q 305
>gi|421899355|ref|ZP_16329720.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 633
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 25/218 (11%)
Query: 62 AAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
A A +SD + +LGL +R++RAL + P+ VQA ++ LSG
Sbjct: 40 GGAIAHTESDTPNSDALNTTAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSG 99
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTA-------LGDSENSNSDKEPTP-PRAPS-LVL 172
+D+++ ++TGSGKT ++++P I+++ + + + P P P PS LVL
Sbjct: 100 RDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVL 159
Query: 173 CPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAAL 224
P L QV +A G L R V ++ GG +P PD+I++TP L
Sbjct: 160 TPTRELALQVT----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRL 215
Query: 225 LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
L++ID R + + +VFDEAD +L F + +
Sbjct: 216 LDHIDSGR----IDLSALDMLVFDEADRMLDMGFADDI 249
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V T
Sbjct: 323 ASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVAT 382
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 383 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 433
>gi|389594963|ref|XP_003722704.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 923
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + ++D L++ + +G E S ++F T V + L GI H D
Sbjct: 700 VPDNEKMDRLLQII-----YGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRR 754
Query: 460 LEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
++R L +F++K + V TD A+RG+DIP+V+HV+Q D D+ HR+GRT RAG
Sbjct: 755 QQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAG 814
Query: 519 QYGLVTSLYTESNRDL-VDTIRRAAKLGQPV 548
G+ T+ Y +NR L +D + ++ GQ +
Sbjct: 815 NKGIATAFYNRNNRRLALDLHKYFSEHGQEI 845
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
+E G+ +P+ VQ + LSG D++ A+TGSGKT ++L+P+++ + G S
Sbjct: 485 IERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVH-GVSPARQR 543
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVI 217
P +LVL P L Q+ L+ + + V GG +P + D++
Sbjct: 544 KSYPI-----ALVLAPTRELAVQIFDEVRKLTFNTD---IFYDVVYGGTRYPQRFEQDIL 595
Query: 218 VSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+ P L + + + + F +K+++ DEAD +L F+ Q+ L+
Sbjct: 596 VACPGRLRDMFNEE---YLSFS-AIKFLILDEADRMLEMGFEEQIEELV 640
>gi|401429648|ref|XP_003879306.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 926
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETSR-TMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + ++D L++ + +G E S ++F T V + L GI H D
Sbjct: 704 VPDNEKMDRLLQII-----YGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRR 758
Query: 460 LEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
++R L +F++K + V TD A+RG+DIP+V+HV+Q D D+ HR+GRT RAG
Sbjct: 759 QQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAG 818
Query: 519 QYGLVTSLYTESNRDL-VDTIRRAAKLGQPV 548
G+ T+ Y +NR L +D + ++ GQ +
Sbjct: 819 NKGIATAFYNRNNRRLALDLHKYFSEHGQEI 849
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
+E G+ +P+ VQ + LSG D++ A+TGSGKT ++L+P+++ + G S
Sbjct: 489 IERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVH-GVSPARQR 547
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVI 217
P +LVL P L Q+ L+ + + V GG +P + D++
Sbjct: 548 KSYPI-----ALVLAPTRELAVQIFDEVRKLTFNTD---IFYDVVYGGTRYPQRFEQDIL 599
Query: 218 VSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI-----NMFRFD 272
V+ P L + + + + F +K+++ DEAD +L F+ Q+ L+ +M D
Sbjct: 600 VACPGRLRDMFNEE---YLSFS-AIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVD 655
Query: 273 EKQ 275
E+Q
Sbjct: 656 ERQ 658
>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 585
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 6/137 (4%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ A +E E + S T+VF T ++ L G H D + +ER L +
Sbjct: 374 LLHAQRE-TEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMALRS 432
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + V TD AARG+DIP+V+HV+ D D++HR+GRT RAG+ GL T+ +
Sbjct: 433 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFN 492
Query: 529 ESN----RDLVDTIRRA 541
E+N R L D ++ A
Sbjct: 493 ENNLSLARPLADLMQEA 509
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 27/193 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L + L + + + +P+ VQ ++ +L+G+D++ A+TGSGKT ++ P+I
Sbjct: 129 TFAEIDLGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIIS 188
Query: 145 KLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+ + P PR +L+L P L Q+ A S G V+ V
Sbjct: 189 GIM-------REQYVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTG---VKVV 238
Query: 202 AVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
GG PI + D++V+TP L +D R R+ ++ ++Y+ DEAD +
Sbjct: 239 VAYGGA--PINQQLRELERGVDILVATPGRL---VDLLERARIS-LQMIRYLALDEADRM 292
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ +++
Sbjct: 293 LDMGFEPQIRKIV 305
>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
Length = 539
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++ L++ + + E GA +T++F T +++ ++ G C H D + +ER
Sbjct: 339 ENKLNVLLQEIGQSQEPGA---KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 395
Query: 464 AKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+ L F+E + + V TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 396 DEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 455
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV ++ A ++ P
Sbjct: 456 SYAFFTPSNSRQAKDLVSVLQEANQIISP 484
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 30/194 (15%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D + + ++ G+ P+ +QA +SGK++V A+TGSGKT +Y++P I +
Sbjct: 116 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI------ 169
Query: 153 SENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG-- 206
+ +P R +LVL P L +Q+ ++A AD G VR V GG
Sbjct: 170 ------NNQPPIRRGDGPIALVLAPTRELAQQIQQVA----ADFGHTSYVRNTCVFGGAP 219
Query: 207 ---QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
Q + + +++++TP L++ ++ + ++ Y+V DEAD +L F+ Q+
Sbjct: 220 KREQARDLERGVEIVIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEPQI 275
Query: 263 IRLINMFRFDEKQL 276
++I R D + L
Sbjct: 276 RKIIEQIRPDRQTL 289
>gi|334703235|ref|ZP_08519101.1| ATP-dependent RNA helicase SrmB [Aeromonas caviae Ae398]
Length = 406
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVEEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK D + LH PR + + W+ + D ++ L+ +K+
Sbjct: 196 EKFASEILK------DPVE---LHAEPPRSERRPITQWVHLADDAAHKLALLVHILKK-- 244
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
ET + ++F T + + ++ L+ AG+ C ++ +R +++ F E F
Sbjct: 245 ---PETQKAIIFVKTRERLAELSGQLQAAGVPCAWIRGEMEQAKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L+ L RAL GF RP+ +Q + P L G+D++ +A TG+GKT ++L+P ++
Sbjct: 4 SFDDFDLNPALSRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPAMQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R L+L P L QV A AL+ + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LILTPTRELALQVSAHAKALAVHTH---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEK 286
F V R++ R+ + + + + +G+EK
Sbjct: 166 FIKDVNRIVEEARYRKHTMLFSATLEGAGLEK 197
>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
Length = 463
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D++T++ LG++D L A + + +P+ VQ A++ +D++ AETGSGKT ++ +
Sbjct: 21 NDDITFQQLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAI 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L TP + +LVL P L Q+ AL A G ++ A
Sbjct: 81 PILQALL--------------ETPQKLFALVLTPTRELAFQIGEQFEALGASIG--ILIA 124
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P VIV+TP L+++++ + + R +KY+V DEAD +L
Sbjct: 125 VIVGGVDTVTQSLALAKRPHVIVATPGRLVDHLENTKGFNL---RALKYLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ +V +++ + E++ + + +K +++ +SL P
Sbjct: 182 MDFEVEVEKILKVIP-KERRTYLYSATMTKKVAKLERASLNDP 223
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGV-F 477
E +T+ +VF +T + +L+ G H +S +R +L F+ K
Sbjct: 260 EMAGQTA--IVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTL 317
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+CTD A+RG+DIP+V V+ D T + D++HRVGRTARAG+ G+ + T+ + ++
Sbjct: 318 ICTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQR 377
Query: 538 IRR 540
I R
Sbjct: 378 IER 380
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 5/202 (2%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
RR+ + + +Q +F +AT+P K ++ + +S R+ +
Sbjct: 170 LRRISQLVPKERQTLFFSATMP----KAIKELVSGYCNNPVQVSVTPESTTAERIDQYLF 225
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V D + L + R + E R ++F T V K L AGI H + S
Sbjct: 226 MVQQDEKQSLLELILSGRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKS 285
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R + L F+ K + V TD AARGIDIP VSHV+ + ++HR+GRTARAG
Sbjct: 286 QPQRQRALDEFRRGKTMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAG 345
Query: 519 QYGLVTSLYTESNRDLVDTIRR 540
+ G+ + E R + IR+
Sbjct: 346 KDGVAIAFCAEDERAYLKDIRK 367
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS +++AL+ G+ P+ +Q ++ PVL G+D++ A+TG+GKT ++++P I++
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA---NALSADNGEPLVRAVA 202
L A +N K LVL P L Q+ A AL+ + +V +
Sbjct: 64 LREA----DNRIPFKS-----CRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTS 114
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGSFQNQ 261
V + D++++TP LL+ ID K F G V+ +V DEAD +L F +
Sbjct: 115 VNKDRNKLHRGTDILIATPGRLLDLIDQK-----AFNLGSVEVLVLDEADQMLDLGFVH- 168
Query: 262 VIRLINMFRFDEKQ 275
+R I+ E+Q
Sbjct: 169 ALRRISQLVPKERQ 182
>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GL+ L++A+ GF P+ +Q ++ VL G DVV A TGSGKT ++++P++E+
Sbjct: 91 FQSMGLNMTLLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKTAAFVIPMVER 150
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T +LVL P+ L Q +++ G L + V + G
Sbjct: 151 LKT------------HSVRVGMRALVLSPSRELALQTMKVVKEFG--RGTDL-KVVLLVG 195
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G G+ G PD++++TP ++ + ME +R V+YVVFDEAD L F
Sbjct: 196 GDSLEEQFGYMAGNPDIVIATPGRFMH-----LKVEMELDLRSVQYVVFDEADRLFEMGF 250
Query: 259 QNQVIRLIN 267
Q+ +++
Sbjct: 251 SAQLTEILH 259
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A T T+VFA T V + +++ AG + + L R + F+ + V T
Sbjct: 298 ASTHSTIVFAATKHHVEYLAQLISQAGFQVSYVYGTLDQVARRNQVARFRTGDTSILVVT 357
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
D AARGIDIP +S+VI DF F+HRVGRTARAG+ G S
Sbjct: 358 DVAARGIDIPLLSNVINYDFPPQPKVFVHRVGRTARAGRRGWAYSF 403
>gi|422349727|ref|ZP_16430616.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657936|gb|EKB30816.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 483
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ K ++Q + +AT + + A LK PD I + + ++
Sbjct: 172 DISRILKLLPANRQSLMFSATFSPDIARLAKNFLK---PDPFMIEVARQNQTADTVTQEV 228
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V + D LI+ +K R + +VF N + + L+ GI H D
Sbjct: 229 FQVADREKTDVLIDILKTRGPENKPLEQVIVFVNAKITCRRLARTLERVGINADAIHGDK 288
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ EER L F+ V V TD AARG+DI + VI D SA D++HR+GRT RA
Sbjct: 289 TQEERQAALDGFKSGAIHVLVATDVAARGLDIKELPCVINYDVPFSAEDYVHRIGRTGRA 348
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G +GL L T + LVD I + +
Sbjct: 349 GSHGLAIMLATREDGRLVDAIEKLTR 374
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L R++ A+E G+ P+ +Q ++ V+ G DV+ AA+TG+GKT S+ +PLI
Sbjct: 3 SFAQFNLDSRIMSAIERIGYKEPTPIQLQAIPVVMKGGDVMGAAQTGTGKTASFGLPLIA 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ ++N+ P +L+L P L +QV +AD PL V
Sbjct: 63 RILP------HANTSMSPARHPVRALILTPTRELADQVSANMTQYAADT--PLRVGVVYG 114
Query: 205 GGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P +++ +TP LL++I+ +R + V+ VV DEAD +L F
Sbjct: 115 GVDIRPQSDMLRRGVEILTATPGRLLDHIE----QRATNLSQVEVVVLDEADRMLDMGFL 170
Query: 260 NQVIRLINMFRFDEKQL 276
+ R++ + + + L
Sbjct: 171 PDISRILKLLPANRQSL 187
>gi|339482174|ref|YP_004693960.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804319|gb|AEJ00561.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 460
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 104/186 (55%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++ L L+ +I+A++++G+ P+ +Q ++ +LSG D++ +A+TG+GKT ++++P +
Sbjct: 1 MSFEDLNLNPSIIKAIQDAGYTTPTPIQKQAIPELLSGHDIMASAQTGTGKTAAFMLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L T TP R P LVL P L QV AL P + V+
Sbjct: 61 HLLATP-----------AKTPGRGPRVLVLTPTRELALQVSEA--ALKYGKYLPRTKVVS 107
Query: 203 VCGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG +P + +P D++V+TP L+++I +R R++F R ++ +V DEAD +L
Sbjct: 108 ILGGMPYPLQNKLLSQPVDILVATPGRLIDHI---QRGRIDFKR-LEMLVLDEADRMLDM 163
Query: 257 SFQNQV 262
F + V
Sbjct: 164 GFIDDV 169
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+K+ + F A A D +YA G H D++ ER +TL +
Sbjct: 243 EALKQAIVFTATKRDADTLA---DNLYA-------QGYAAAALHGDMNQRERTRTLTKLR 292
Query: 472 EKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
G V V TD AARGIDI +++HVI D A D++HR+GRT RAG G+ S S
Sbjct: 293 SGGLRVLVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGAAGVAVSF--AS 350
Query: 531 NRD 533
NRD
Sbjct: 351 NRD 353
>gi|357616261|gb|EHJ70100.1| RNA helicase [Danaus plexippus]
Length = 559
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D V + + L DRL++A+ G+ P+++Q ++ +L GKDV++ A TGSGKT ++ +
Sbjct: 4 DKKVMFHEMELDDRLLKAISQLGWPHPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFTI 63
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+I+K+ S + +L+L P+ LC Q+ + L+ VR
Sbjct: 64 PVIQKILNLKNTSAHQC---------IRALILSPSKELCGQITSVVGHLTLKCARE-VRC 113
Query: 201 VAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + I KPD++VSTP+ +L ++ R E + +V DEAD++
Sbjct: 114 IDISSNGDMQIQKSLLADKPDIVVSTPSRVLAHLKANNVRLKE---DIAMLVVDEADLVF 170
Query: 255 CGSFQNQVIRLI 266
++N++ L+
Sbjct: 171 SFGYENEIKELL 182
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 32/146 (21%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDL-------SLEE----RAKTLVNFQEK- 473
+T++F TVD Y + L+ I + +L S+E+ R + +V EK
Sbjct: 257 KTIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCMSVEQFNRGRYQIIVASDEKA 316
Query: 474 -----GGVFV---------------CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
GG+ + +RGID +VS+VI DF ++HR GR
Sbjct: 317 LEEPDGGMMLEETGKKKQKSKRRKDKESGVSRGIDFQHVSNVINFDFPLDVTAYVHRAGR 376
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIR 539
TAR G V S + + L++ ++
Sbjct: 377 TARGTSQGSVLSFVSIREKPLMNAVK 402
>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 388
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 144/284 (50%), Gaps = 36/284 (12%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
++++ +LGLS +++ALE + P +Q ++ +L GKD++ A+TGSGKT S+++P+
Sbjct: 8 HMSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPI 67
Query: 143 IEKLCTA-LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-LVRA 200
++ L T LG + + N +LVL P L QV ++ A S N P +++
Sbjct: 68 LQMLQTKPLGKNRHIN-----------ALVLVPTRELAVQVGQVFQAFS--NALPNKIKS 114
Query: 201 VAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
+AV GG Q + +++++TP LL+ +D K ++ V+ +V DEAD +L
Sbjct: 115 LAVYGGVSINPQMIQLQGVEILIATPGRLLDLVDSKAV----YLSDVEVLVLDEADKMLN 170
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315
F+ + + N+F+ ++ + S L D ++T+ L D + E I++E
Sbjct: 171 LGFKEE---MANIFKLLPQKRQNLLFSAT---LGKDVDTITEFLLHDPVKI--EIIAEEQ 222
Query: 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAAT 359
N + + E+ + G + R + K + ++ IF ++
Sbjct: 223 NIDLIQQIAYAVEDARKGPL----LRYLIKEQKMNQVLIFTSSV 262
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVC 479
+ ++ ++F ++V AV + LK I H S R + L F K G V V
Sbjct: 251 KMNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQF--KAGNIHVLVA 308
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
TD +RGIDIP + VI + S D++HR+GRT RA G+ +L +E I+
Sbjct: 309 TDLMSRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEETHHFSVIQ 368
Query: 540 RAAKLGQPV 548
+ K+G+ V
Sbjct: 369 K--KMGKKV 375
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 22/240 (9%)
Query: 47 FLRLNQWKGRPF----RGFAAAAAVVSDKNGS-SDTFFADDNVTWKSLGLSDRLIRALEN 101
F+ + +W P R A A ++N + SD+ + T+ GL+ ++RA+
Sbjct: 59 FVFIPKWVASPVSRASRSCAGCPAAPFERNATMSDSVAKPVDATFDQFGLAAEILRAIAE 118
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
G+ P+ +QA ++ VLSG+DV+ AA+TG+GKT S+ +P+I++L N+++
Sbjct: 119 QGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLP----QANTSASPA 174
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP-----DV 216
P RA L+L P L +QV AN + PL AV G P ++
Sbjct: 175 RHPVRA--LILTPTRELADQVA--ANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEI 230
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
+++TP LL+++ +++ + V+ +V DEAD +L F + R++N+ + + L
Sbjct: 231 LIATPGRLLDHV----QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTL 286
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + +Q + +AT KK A L+ + I + + +
Sbjct: 271 DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLR----NPQTIEVARSNAAASTVTQIV 326
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+V + A+++ +++R + +VF N+ + + ++ GI H D
Sbjct: 327 YDVAEGDKQAAVVKLIRDR-----SLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDR 381
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER + L F+ +G + V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 382 SQSERMQALDAFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 440
Query: 517 AGQYGLVTSLYTESNR----DLVDTIRRAAKL 544
AG G SL + + R D+ I+R L
Sbjct: 441 AGASGDALSLCSPNERKQLADIEKLIKRTLSL 472
>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|417906606|ref|ZP_12550387.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Staphylococcus capitis SK14]
gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
caprae C87]
gi|341597608|gb|EGS40154.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus capitis
VCU116]
Length = 511
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 32/198 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K LG+SDR ++ LE+ GF P+ +Q S+ L G D++ A+TG+GKT ++ +PLIEK
Sbjct: 4 FKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ G SL+L P L QV S V+ V V G
Sbjct: 64 VVGQQG---------------VQSLILAPTRELAMQVAEQLREFSKGQN---VQVVTVFG 105
Query: 206 GQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
G PI + P ++V TP ++++++ RR G+ ++ DEAD ++
Sbjct: 106 --GMPIERQIKALKRGPQIVVGTPGRVIDHLN----RRTLKTNGIHTLILDEADEMMNMG 159
Query: 258 FQNQVIRLINMFRFDEKQ 275
F + + +++ D++Q
Sbjct: 160 FIDDMRFIMDKIPSDQRQ 177
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 404 DTQVDALIEAVKERLEFGAETS--------RTMVFANTVDAVYAVTKILKTAGIECYCYH 455
D Q+D VKE +F T+ +VF T V +T L + G + H
Sbjct: 212 DPQIDEYYTIVKELEKFDTFTNFLDVHQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLH 271
Query: 456 KDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R + L F+ ++ + V TD AARG+DI VSHV D + HR+GRT
Sbjct: 272 GDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRT 331
Query: 515 ARAGQYGLVTSLYTESNRDLVDTI 538
RAG+ G+ + D + I
Sbjct: 332 GRAGKEGIAVTFVNPIEMDYIRQI 355
>gi|50312293|ref|XP_456179.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74689956|sp|Q6CIR0.1|DBP10_KLULA RecName: Full=ATP-dependent RNA helicase DBP10
gi|49645315|emb|CAG98887.1| KLLA0F24684p [Kluyveromyces lactis]
Length = 973
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
N ++D ++ S GLS ++ + GF +P+ +Q ++ +L +D+V A TG
Sbjct: 114 NTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTG 173
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
SGKT ++++P+IEKL T +++L P+ L Q R+ S
Sbjct: 174 SGKTAAFVLPMIEKLKT------------HSAKIGVRAVILSPSRELAIQTHRVFKEFSK 221
Query: 192 DNGEPLVRAVAVCGGQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVR 240
+ +R++ + GG G +G PDV+++TP L+ N+D ++
Sbjct: 222 GSD---LRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNLD---------LK 269
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMF 269
V+YVVFDEAD L FQ Q+ L+ F
Sbjct: 270 SVEYVVFDEADRLFEMGFQEQLNELLVAF 298
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V VT++LK G + L+ R + L NF+ + V TD AAR
Sbjct: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
G+DIP +++VI S+ F+HRVGRTARAG G S+ +E+
Sbjct: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSEN 525
>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274, partial [Cryptosporidium hominis]
Length = 868
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 10/198 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+++Q + V+AT+P + +L + P+ I +Y+ + LK ++ V D ++
Sbjct: 179 KNRQCVLVSATMPTALASFSKVMLNE--PEVIQIDSDYIL--SETLKLTFLFVREDEKLA 234
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+L+ ++ + R ++F T V + KIL++ I + ++ E R L
Sbjct: 235 SLLYLLRNTI---PSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLS 291
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F++ K V TD AARG+DIP + +VI DF S F+HR GRTARAGQ+G SL
Sbjct: 292 TFRKNKSRALVVTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLI 351
Query: 528 TESNRDLVDTIRRAAKLG 545
T +RDL TI LG
Sbjct: 352 T--SRDLPYTIDLCLFLG 367
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 26/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++S G S +L+ +++ G+ P+ +Q +L+G+DVV A TGSGKT +++P+IE
Sbjct: 5 TFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64
Query: 145 KL-CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L C S + R +VL P L Q R+ L+ + A+
Sbjct: 65 RLGC----------SHSQIVGIRG--VVLSPTRELALQTYRVVRKLACKTN---LVVCAL 109
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G PD++V+TP L ++I + VK ++ DEAD L
Sbjct: 110 TGGSSLDRQFESLSGNPDIVVATPGRLFHHIIEAGLSLI----AVKIIILDEADRLFEMG 165
Query: 258 FQNQVIRLI 266
+Q+ +++
Sbjct: 166 LASQIEKIL 174
>gi|452824296|gb|EME31300.1| ATP-dependent RNA helicase isoform 2 [Galdieria sulphuraria]
gi|452824297|gb|EME31301.1| ATP-dependent RNA helicase isoform 1 [Galdieria sulphuraria]
Length = 434
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGI----ECY---CYHKDLSLEERAKTLVNFQEK-G 474
E S+T+VF NTVD+ V +L +G+ EC CYH ++ +ER + + F EK
Sbjct: 299 EDSKTIVFCNTVDSCRFVDHVL--SGLNEKGECLPSACYHGEMPPKERRSSWIRFCEKDA 356
Query: 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G VCTD ARG+D+P++ +I DF +A +LHRVGR G+V SL T S+R L
Sbjct: 357 GFLVCTDLGARGLDVPSIGAIIMFDFPKTAASYLHRVGRIRNE---GVVYSLITHSSRKL 413
Query: 535 VD 536
+
Sbjct: 414 AE 415
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLG+ L+ +L+ G P+ +Q + +L+G +V I AETGSGKT ++L+PL+E
Sbjct: 41 FASLGIGKELLASLDEQGIHVPTQIQNRGIPKILTGSNVFIGAETGSGKTLTFLLPLVEL 100
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + E P R LV P L EQ+ ++A LS + G
Sbjct: 101 L-----TRQEKSGRVERLPNRPRCLVFAPTRELGEQICKVAKKLSH---RARFSCTEIVG 152
Query: 206 GQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G+ + P D++V+TP L + R++ + ++++VFDEAD L
Sbjct: 153 GRSRKAEEESLSVPRDLVVATPGRFLEH----NRKKNIMLSELRHIVFDEADYLF 203
>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|442570182|sp|Q75B50.2|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
gi|374107035|gb|AEY95943.1| FADL273Cp [Ashbya gossypii FDAG1]
Length = 623
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 10/187 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
++Q + +AT P + + A LK D ++S + + + +K + V +
Sbjct: 337 NRQTLMFSATFPTDIQHLAADFLK----DYIFLSVGRVGSTSENITQKVLHVEDIDKRSV 392
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ L ++ T+VF T A+T L + H D + ER + L
Sbjct: 393 LLD-----LLAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAF 447
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V V T AARG+DIPNV+HVI D + D++HR+GRT RAG GL T+ +
Sbjct: 448 FRTGRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFN 507
Query: 529 ESNRDLV 535
N+++V
Sbjct: 508 RGNKNVV 514
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 13/182 (7%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ + F +P+ VQ SV V G+D++ A+TGSGKT +L P++ + +
Sbjct: 153 LDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNG 212
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG---- 206
S S ++VL P L Q+ A + V+ V GG
Sbjct: 213 PASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTY---RSWVKPCVVYGGADIR 269
Query: 207 -QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
Q + + D+IV+TP L + ++ R ++ VKY+V DEAD +L F+ Q+
Sbjct: 270 QQIRELERGCDLIVATPGRLNDLLE---RGKISLC-SVKYLVLDEADRMLDMGFEPQIRH 325
Query: 265 LI 266
++
Sbjct: 326 IV 327
>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
Length = 412
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L L+RA+E G+ RP++VQA ++ L GKDV+ +A TG+GKT ++L+P+I+
Sbjct: 4 FSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L K P P R L+L P L QV A AL+ ++ + G
Sbjct: 64 L--------QDFPRKRPGPARI--LILTPTRELAIQVADQARALAKYT---TLKVFTITG 110
Query: 206 GQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G + +GK D++V+TP L+ I+ ++ F R V+ ++ DEAD +L F
Sbjct: 111 GISYDEHAEMLGKTQDIVVATPGRLMEYIEAEK-----FDCRAVECLILDEADRMLDMGF 165
Query: 259 QNQVIRLINMFRFDEKQL 276
V RL + R+ + L
Sbjct: 166 GKIVERLNHECRWRRQSL 183
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
+D ++ L +KE+ E RT++F T + + + L+ GI C +++
Sbjct: 230 MDHKLALLENIIKEQAE------RTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAA 283
Query: 463 RAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R + F++ V + TD AARGID+P+VSHVI D +A ++HR+GRTARAG+ G
Sbjct: 284 RTNMITRFRDGVVNVLIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKG 343
Query: 522 LVTSLYTESNRDLVDTIRRAAK 543
SL ++++++ I R K
Sbjct: 344 TAISLVEAHDQNMIERISRYMK 365
>gi|402574642|ref|YP_006623985.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402255839|gb|AFQ46114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 500
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 27/180 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L LS+ ++R++ N GF + +Q ++ + GKD++ A+TG+GKT +Y +PL+E
Sbjct: 3 TFTDLNLSELVMRSIINMGFEETTPIQEQTIPSAMEGKDLIGQAQTGTGKTAAYGIPLVE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ +G SEN +VL P L QV N + + A+ +
Sbjct: 63 RI---MGQSENIQ-----------GIVLAPTRELAVQVAEELNKIGQFK---RIHALPIY 105
Query: 205 GGQG--WPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQG W I +P +IV+TP L++++ RR+ + +K VV DEAD +L F
Sbjct: 106 GGQGIDWQIRALKKRPHIIVATPGRLMDHM----RRKTIRLHDIKIVVLDEADEMLNMGF 161
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 10/192 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + K +Q + +AT+P + A +K+ P I + + +++
Sbjct: 163 EDIETILKEVPEERQTLLFSATMPRQIQNIAQRFMKE--PQLISIKATGVTVSD--IEQH 218
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++EVT + D L R+ ++VFA T V +++ L G H D
Sbjct: 219 YVEVTERLKFDVL-----SRILDIQSPDLSIVFARTKRRVDELSEALSKRGYSAEGIHGD 273
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ +R L F++ V V TD AARG+DI V+HV D ++HRVGRT R
Sbjct: 274 LTQSKRDSVLRQFKDGTIEVLVATDVAARGLDISGVTHVFNFDIPQDPESYVHRVGRTGR 333
Query: 517 AGQYGLVTSLYT 528
AG+ GL +L T
Sbjct: 334 AGKSGLAITLVT 345
>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
Length = 458
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ + +Q + +AT KK AG L D I + +K++
Sbjct: 175 DISRILNALPKKRQNLMFSATFSPEIKKLAGNFLT----DPVVIEVARQNATAATIKQEV 230
Query: 399 IEVTVDTQVDALIEAVKERLE-FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
V + DAL+E +K R E + +T+VF N + + L+ G H D
Sbjct: 231 FSVNELQKTDALVELLKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGD 290
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ EER K L +F++ + V TD AARG+DI + VI D D++HR+GRT R
Sbjct: 291 KTQEERLKLLKDFKDGTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGR 350
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKL 544
AG GL L T+ ++ D IR+ ++
Sbjct: 351 AGSSGLALMLVTDKDKKSFDAIRKLTRV 378
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 23/192 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ GL+ L+ A++ G+ +P+ +Q ++ VL G+DV+ AA+TG+GKT S+ +P+++K
Sbjct: 7 FEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQK 66
Query: 146 LCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L L ++ S P R P L+L P L +Q A ALS + +R V
Sbjct: 67 LL-PLANTSTS-------PARHPVRVLILSPTRELADQT---AEALSNYAADTPIRIGVV 115
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K +++++TP LL++++ +R + V+ DEAD +L
Sbjct: 116 YGGVDIKPQAEALRKGVEILIATPGRLLDHLE----QRNTNLNQSGIVILDEADRMLDMG 171
Query: 258 FQNQVIRLINMF 269
F + R++N
Sbjct: 172 FLPDISRILNAL 183
>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661294|sp|Q6FS54.1|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
Length = 540
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ----MFPDADWISGN-----YLHFHN 391
R + + + +Q + AT P ++ A +K+ + D +S N + +
Sbjct: 295 RIIGQTKSKDRQTLMFTATWPKEVRELASTFMKEPVKVSIGNRDELSANKRITQIVEVVD 354
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
PR KE+ L++ +K+ + + ++FA V + L G +
Sbjct: 355 PRSKER-----------KLLDLLKKYQSGPKKNDKVLIFALYKKEASRVERNLNYNGYKV 403
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
H DLS ++R + L F+ K + + TD AARG+DIPNV VI F + D++HR
Sbjct: 404 AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 463
Query: 511 VGRTARAGQYGLVTSLYTESNRDL 534
+GRT RAGQ G +L+TE + L
Sbjct: 464 IGRTGRAGQTGTAHTLFTEQEKHL 487
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 23/181 (12%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E + F +P+ +QA S +LSGKDV+ AETGSGKT ++ VP I L T+
Sbjct: 144 EIAKFPKPTPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAINNLLTS---------- 193
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
P LV+ P L Q+ L+ G + V GG Q I K
Sbjct: 194 -SSKPKGIKVLVISPTRELASQIYDNLVLLTQKVG---IDCCVVYGGVPKDDQRRQIAKS 249
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274
+V+V+TP LL+ I+ + V Y+V DEAD +L F+ + R+I + ++
Sbjct: 250 NVVVATPGRLLDLIEEGSVD----LSPVDYMVLDEADRMLEKGFEEDIKRIIGQTKSKDR 305
Query: 275 Q 275
Q
Sbjct: 306 Q 306
>gi|448522708|ref|XP_003868758.1| Dbp10 protein [Candida orthopsilosis Co 90-125]
gi|380353098|emb|CCG25854.1| Dbp10 protein [Candida orthopsilosis]
Length = 912
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 36/205 (17%)
Query: 77 TFFADDNVTWK--------SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
+FF +N T K S G S L+ + G+ +P+ +Q S+ +++ +DVV A
Sbjct: 79 SFFTANNPTAKKAKAGSFASFGFSKFLLSNISKKGYKQPTPIQRKSIPLIINNRDVVGMA 138
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
TGSGKT ++++PLIEKL + + PT RA ++L P+ L Q +
Sbjct: 139 RTGSGKTAAFVLPLIEKLKS-----------RRPTGVRA--VILSPSRELALQTYKQVKE 185
Query: 189 LSADNGEPLVRAVAVCGGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRG 241
S ++++ + GG G + KPDVIV TP L+ + M++ +
Sbjct: 186 FSRGTD---LQSIVLIGGDSLEEDFGKMVSKPDVIVCTPGRFLH-----LKVEMQYDLST 237
Query: 242 VKYVVFDEADMLLCGSFQNQVIRLI 266
V+Y+VFDEAD L F Q+ L+
Sbjct: 238 VQYIVFDEADRLFEMGFAEQLNELL 262
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Query: 427 TMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
T++F T V +TK+L+ AG + Y Y +L++ A+ +Q K G + V TD
Sbjct: 387 TIIFVPTKHHVEYITKLLRDAGYLVSYIYG---TLDQHARKNQLYQFKIGLTKILVVTDV 443
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
AARGIDIP +++VI S+ F+HRVGRTARAG G S+ E
Sbjct: 444 AARGIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNE 490
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 23/204 (11%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
++ T + D+VT+ + GL ++RAL SG+ RP+ +QAA++ V+ G+DV+ AA+TG+G
Sbjct: 5 TTSTAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTG 64
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSA 191
KT + +P+I+ L L ++ S S P R P +L+L P L +QV +
Sbjct: 65 KTAGFSLPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 192 DNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +
Sbjct: 117 YTA---LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRML 169
Query: 246 VFDEADMLLCGSFQNQVIRLINMF 269
V DEAD +L F + R+IN+
Sbjct: 170 VLDEADRMLDMGFLPDLQRIINLL 193
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQIERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|322693567|gb|EFY85423.1| ATP-dependent RNA helicase MAK5 [Metarhizium acridum CQMa 102]
Length = 794
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
F A AA+ ++ + D D W +L LS L+ A+ GF +P+ +Q S+ +++
Sbjct: 194 FLALAAMADEEAENDDLDMGD----WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIA 249
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR----AP-SLVLCPN 175
G DV+ A+TGSGKT ++ +P++EK + E+ D+ P + P +++L P
Sbjct: 250 GGDVIGKAQTGSGKTLAFGIPIVEKWLEMREEQEDQGGDRGDQPKKKNGEGPMAVILSPT 309
Query: 176 VVLCEQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNID 229
L +Q+ A+ +G P + V G Q + + D+++ TP L +D
Sbjct: 310 RELAKQIGEHIKAVC--DGLPASPYICVVTGGLSIQKQQRQLEEADIVIGTPGRLWEVLD 367
Query: 230 PKRRRRMEFVRGVKYVVFDEADMLL-CGSFQ 259
+ + +F R +K++V DEAD L G F+
Sbjct: 368 GDAKLQEQFTR-IKFLVVDEADRLFKVGQFK 397
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
RT+VF N++ AV +T +L+ H + + R ++L F + + V TD AA
Sbjct: 517 RTLVFTNSISAVRRITPLLQHLNQNALPLHSQMIQKARLRSLEKFTAARNTILVATDVAA 576
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RG+DI V VI +A ++HR GRTARA + G+ S+ S +++ T R A+K+
Sbjct: 577 RGLDIKEVDQVIHYHVPRAADTYIHRSGRTARADRSGV--SIILCSPDEVLPTRRLASKV 634
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSNNPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
gi|74656359|sp|Q5A4E2.1|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
Length = 672
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLK----DYVFLSVGRVGSTSENITQKILYVEDDEKKS 432
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+++ + E T+VF T + L G H D S ER K L
Sbjct: 433 VILDLLSAN-----ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALA 487
Query: 469 NFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ + V T AARG+DIPNVSHVI D + D++HR+GRT RAG G+ T+ +
Sbjct: 488 AFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFF 547
Query: 528 TESNRDLV 535
+N+++V
Sbjct: 548 NRNNKNVV 555
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 18/185 (9%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI-EKLCTA 149
L + L+ ++ S F +P+ VQ SV V +G+D++ A+TGSGKT +L P++ E
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
SN LV+ P L Q+ + S VRA V GG
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSY---RSWVRACVVYGGA-- 307
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
IG+ D++V+TP L + +D R + ++Y+V DEAD +L F+ Q
Sbjct: 308 DIGQQMRNMDRGCDLLVATPGRLKDLLD----RGKVSLANIRYLVLDEADRMLDMGFEPQ 363
Query: 262 VIRLI 266
+ ++
Sbjct: 364 IRYIV 368
>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|406678532|ref|ZP_11085707.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|423205247|ref|ZP_17191803.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
gi|423211047|ref|ZP_17197600.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
gi|404614049|gb|EKB11053.1| hypothetical protein HMPREF1169_03118 [Aeromonas veronii AER397]
gi|404621645|gb|EKB18511.1| hypothetical protein HMPREF1170_03915 [Aeromonas veronii AMC35]
gi|404624330|gb|EKB21165.1| hypothetical protein HMPREF1168_01438 [Aeromonas veronii AMC34]
Length = 407
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 27/243 (11%)
Query: 309 EYISDEGNFEGDSDVEGLTEETKS---GSIKKKDWRRVRKNYQRSKQYIFVAATLPING- 364
EYI E D +V L E + G IK D R+ + K + +ATL G
Sbjct: 138 EYIEKEEFESHDIEVLVLDEADRMLDMGFIK--DVNRIVAEARYRKHTMLFSATLEGAGL 195
Query: 365 KKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK----WIEVTVDT--QVDALIEAVKERL 418
+K A +LK D + LH PR + + WI + D ++ L +K+
Sbjct: 196 EKFANEILK------DPVE---LHAEPPRSERRPITQWIHLADDAAHKLALLTHILKD-- 244
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF- 477
ET + ++F T + + ++ L+ AGI C ++ +R +++ F E F
Sbjct: 245 ---PETQKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFL 301
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARGID+PNVSHVI D A ++HR+GRT RAG G SL + +V
Sbjct: 302 IATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVAK 361
Query: 538 IRR 540
I R
Sbjct: 362 IER 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L RAL GF RP+ +Q + P L G+D++ +A TG+GKT S+L+P ++
Sbjct: 4 SFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P R L+L P L QV A AL+A + +
Sbjct: 64 HLL--------DFPRRKPGPCRM--LILTPTRELALQVTAHAKALAAHTN---LSIETII 110
Query: 205 GGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG P D++V+TP LL I+ + EF ++ +V DEAD +L
Sbjct: 111 GGVSHEEQLPALTKTTDIVVATPGRLLEYIE-----KEEFESHDIEVLVLDEADRMLDMG 165
Query: 258 FQNQVIRLINMFRFDEKQL---SRMNESGVEK 286
F V R++ R+ + + + + +G+EK
Sbjct: 166 FIKDVNRIVAEARYRKHTMLFSATLEGAGLEK 197
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 23/204 (11%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
++ T + D+VT+ + GL ++RAL SG+ RP+ +QAA++ V+ G+DV+ AA+TG+G
Sbjct: 5 TTSTAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTG 64
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSA 191
KT + +P+I+ L L ++ S S P R P +L+L P L +QV +
Sbjct: 65 KTAGFSLPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 192 DNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +
Sbjct: 117 YTA---LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRML 169
Query: 246 VFDEADMLLCGSFQNQVIRLINMF 269
V DEAD +L F + R+IN+
Sbjct: 170 VLDEADRMLDMGFLPDLQRIINLL 193
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQIERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 442
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 29/191 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++SL LS L++A+ G+ P+ +QA S+ LSG+D++ +A+TG+GKT S+++P +
Sbjct: 1 MSFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
E+L P+P R LVL P L QVV +A+ VR
Sbjct: 61 ERLLV-------------PSPARGKGPRILVLTPTRELANQVV---DAVKTYGKFMRVRC 104
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
++ GG Q + +P D+IV+TP L++++D RR + F R ++ +V DEAD +L
Sbjct: 105 GSILGGMPYREQMMLLSQPVDIIVATPGRLIDHLD---RRSINFSR-LEMLVLDEADRML 160
Query: 255 CGSFQNQVIRL 265
F V R+
Sbjct: 161 DMGFSEDVDRI 171
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A ++ ++F+ T + L + G H D+S R +T+ N + K + V T
Sbjct: 242 ASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLLVAT 301
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D AARG+D+ +SHVI D A D++HR+GRT RAG G+ S + + +D I R
Sbjct: 302 DVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRIER 361
Query: 541 AAKLGQPV 548
G+P+
Sbjct: 362 LT--GKPL 367
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 23/204 (11%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
++ T + D+VT+ + GL ++RAL SG+ RP+ +QAA++ V+ G+DV+ AA+TG+G
Sbjct: 5 TTSTAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTG 64
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSA 191
KT + +P+I+ L L ++ S S P R P +L+L P L +QV +
Sbjct: 65 KTAGFSLPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 192 DNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +
Sbjct: 117 YTA---LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRML 169
Query: 246 VFDEADMLLCGSFQNQVIRLINMF 269
V DEAD +L F + R+IN+
Sbjct: 170 VLDEADRMLDMGFLPDLQRIINLL 193
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQIERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 371
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 27/185 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ +K+LG+S +I L+ SG P+ +Q ++ +LSGKDV+ A+TG+GKT ++L+PL
Sbjct: 1 MNFKTLGISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLF 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL + P +LVL P L Q+ + A L+ + + +
Sbjct: 61 EKLSSK--------------SPNIQALVLSPTRELAIQITQEAKKLAEAKA---IGILPI 103
Query: 204 CGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GGQ +GKP ++++TP LL++I R+ ++ + + V DEAD +L
Sbjct: 104 YGGQDTAMQLKKLGKPVHLVIATPGRLLDHIG---RKSIDLSKTTTF-VLDEADQMLLMG 159
Query: 258 FQNQV 262
F+N V
Sbjct: 160 FKNDV 164
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 12/213 (5%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
K D + K + +Q + +AT+ KK A P I+ + + +
Sbjct: 161 KNDVESITKQLPKKRQTLCFSATMDAPVKKLAYRYTSS--PTTVTIAKKKITIEA--IHQ 216
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ +E T + AL++ + E + A ++F T V + + +K C H
Sbjct: 217 EIVETTDRHKQAALLQVLSEDNPYMA-----IIFCRTKRRVEVLYEAMKDKDYNCVRLHS 271
Query: 457 DLSLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D+ +R + + +F+ KG + + TD AARG+DI V+H+ D + ++HR+GRT
Sbjct: 272 DILQSKRERIMKSFK-KGDIQYLIATDVAARGLDISGVTHIYNYDVPETPEAYIHRIGRT 330
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
RAG G + N V I + P
Sbjct: 331 GRAGNDGYTCMFMSPKNEKEVSEIEAHIRFKIP 363
>gi|195482299|ref|XP_002101990.1| GE15300 [Drosophila yakuba]
gi|194189514|gb|EDX03098.1| GE15300 [Drosophila yakuba]
Length = 560
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
V + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y +PL
Sbjct: 8 TVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPL 67
Query: 143 IEK-LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
I+K L + L SE S +++L P LC Q ++ L G+ +VR
Sbjct: 68 IQKILNSKLNASEQCVS----------AVILAPTKELCRQSRKVIEQLVESCGK-VVRVA 116
Query: 202 AVCGGQGWPIG-------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ G + +PD++V+TPA LL + + + ++ V+ +V DEAD++
Sbjct: 117 DIAGSSNDTVTQRHALAERPDIVVATPAKLLAHAEAG---SVVDLKHVETLVVDEADLVF 173
Query: 255 CGSFQNQVIRLINMF 269
++ RLI
Sbjct: 174 AFGYEKDFKRLIKHL 188
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ----MFPDADWISGNYLHFHNP 392
+KD++R+ K+ Q + V+ATL + + G L + + +S + L H
Sbjct: 178 EKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPEVVSQDQL-THQR 236
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
L E+ + + L +K RL G ++++F N++D Y V L+ GI
Sbjct: 237 ILAEE------NDKPSILYALLKLRLIRG----KSIIFVNSIDRCYKVRLFLEQFGIRAC 286
Query: 453 CYHKDLSLEERAKTLVNFQEKG--GVFVCTD-------------------------AAAR 485
+ +L R T+ F KG + + +D +A+R
Sbjct: 287 VLNSELPANIRIHTISQFN-KGTYDIIIASDEHHLEQPGGKSATNRKSPRSGDMESSASR 345
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
GID V++VI DF ++HR GRTAR G V S + + D + +
Sbjct: 346 GIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAKVNDAVEK 400
>gi|410912180|ref|XP_003969568.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Takifugu
rubripes]
Length = 512
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 25/193 (12%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A D ++K+L + L+ AL N P+ VQ + +L G +++ AAETGSGKT SYL
Sbjct: 99 AVDQPSFKNLPICKELLEALHNMDITHPTTVQLECIPKILKGHNILCAAETGSGKTLSYL 158
Query: 140 VPLIEKL-----CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194
+P++ +L C +E +NS + ++VL P+ L EQV ++ L + G
Sbjct: 159 LPVVHRLQADKSCGT--HAEGANSIR--------TIVLVPSRELAEQVAAVSRTLCSPFG 208
Query: 195 EPLVRAVAVCGGQGWPIG-----KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
L + V G G G +PD++V+TP AL + RRR ++ +K+ V DE
Sbjct: 209 L-LTKTVGGGRGVGHIKGIFRRNQPDILVATPGALAKAL----RRRCLYLSHLKFFVVDE 263
Query: 250 ADMLLCGSFQNQV 262
AD + SF + +
Sbjct: 264 ADTMFDHSFSHML 276
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 11/213 (5%)
Query: 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAG 369
++ DE + D + E+ + + R R Q + V AT P G
Sbjct: 259 FVVDEADTMFDHSFSHMLEDILHYTHISSNPRETR-GLDHKAQLLVVGATFP----GGVG 313
Query: 370 AVLKQMFPDADWI--SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRT 427
VL ++ + LH P +K+ +++V ++ L +A+K+ + +
Sbjct: 314 DVLSRVMDLGSMVVVKSKMLHLLMPHVKQMFLKVKGADKILELQQALKQLQQEKGGGA-V 372
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG--GVFVCTDAAAR 485
+VF N V + +L+ G++ ++ RA ++FQ KG V VCTD +R
Sbjct: 373 LVFCNKSATVNWLGYMLEEMGVQHLRLQGEMPAAVRAGVFLSFQ-KGVVDVLVCTDIGSR 431
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
G+D V V+ D S D++HR GR RAG
Sbjct: 432 GLDTSKVRLVVNYDCPESYTDYIHRAGRVGRAG 464
>gi|389609093|dbj|BAM18158.1| DEAD box ATP-dependent RNA helicase [Papilio xuthus]
gi|389610941|dbj|BAM19081.1| DEAD box ATP-dependent RNA helicase [Papilio polytes]
Length = 405
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 34/223 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ S+GL D L+R + GF +PS +Q S+ P++ G+DV+ A++G+GKT ++ + +++
Sbjct: 33 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQ 92
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
L T L +++ LVL P L Q+ ++ AL G+ + V+ A
Sbjct: 93 SLDTTLRETQ--------------VLVLSPTRELATQIQKVILAL----GDFMNVQCHAC 134
Query: 204 CGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I K D V+ TP + + I RRR+ R +K +V DEAD +L
Sbjct: 135 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMI----RRRVLRTRSIKMLVLDEADEMLNKG 190
Query: 258 FQNQVIRLINMFRF--DEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ Q+ +++R+ Q+ ++ + + LEM + +T P
Sbjct: 191 FKEQI---YDVYRYLPPATQVVLISATLPHEILEMTSKFMTDP 230
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++ ++F NT V +T+ ++ A H D+ +ER + F+ + V + TD
Sbjct: 272 TQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVW 331
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
ARGID+ VS VI D + ++HR+GR+ R G+ G+
Sbjct: 332 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 370
>gi|311743209|ref|ZP_07717016.1| DeaD protein, partial [Aeromicrobium marinum DSM 15272]
gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
Length = 567
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGL D L+ L G+ P+ +QA ++GP+L G+DVV A+TG+GKT ++ +P++E
Sbjct: 7 SFADLGLGDALVAVLAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILE 66
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L +P +L+L P L QV +A P +R + V
Sbjct: 67 RL--------------DPDRAETQALILAPTRELALQVSDAFATYAART--PGLRILPVY 110
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQG+ V+V TP +++++D R +E G+ ++V DEAD +L F
Sbjct: 111 GGQGYAAQLRGLQRGAHVVVGTPGRVIDHLD---RGSLEL-SGLDHLVLDEADEMLTMGF 166
Query: 259 QNQVIRLI 266
V R++
Sbjct: 167 AEDVERIL 174
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + KQ +AT+P ++ A K+ D ++ ++++
Sbjct: 168 EDVERILADTPEDKQVALFSATMPPAIRRLA----KKYLNDPVDVATPAATRSTTTVRQR 223
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
WI V + DAL ++ +E G ++F T A + + L++ G + + D
Sbjct: 224 WISVPHHGKFDALTRLLE--VENG---DGMIIFVRTKQATEELAEKLRSRGFDAAALNGD 278
Query: 458 LSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
L +R + + Q KGG + V TD AARG+D+ ++HVI D A ++HR+GRT
Sbjct: 279 LVQAQRER--IVGQLKGGSLDILVATDVAARGLDVDRITHVINHDIPHDAESYVHRIGRT 336
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G T R ++ I + + G+PV
Sbjct: 337 GRAGRSGEAVLFVTPRERRMLSAIEKVS--GRPV 368
>gi|384490926|gb|EIE82122.1| hypothetical protein RO3G_06827 [Rhizopus delemar RA 99-880]
Length = 816
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T +V + L G E H D ER L +F++ K + V T AAR
Sbjct: 572 TLVFTETKRMADSVCEFLLENGFEATAIHGDRIQSEREAALDSFRKGKTPIMVATAVAAR 631
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+DIPNV+HVI D DF+HRVGRT RAG G TS +T NR L
Sbjct: 632 GLDIPNVTHVISFDLPNDIDDFVHRVGRTGRAGNTGYATSFFTRQNRFL 680
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT--ALGDSENSNSDK---- 160
P+ VQ S+ V +G+D++ A+TGSGKT +L P++ + T L + E++ +
Sbjct: 329 PTPVQKYSIPIVAAGRDLMACAQTGSGKTAGFLFPILSAMFTFGPLAEPEDAEVKQGYRT 388
Query: 161 -EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
+ P+A L+L P L Q+ A VR GG Q I +
Sbjct: 389 YKKAYPQA--LILAPTRELASQIYEEAKKFCY---RSYVRPCVAYGGADIQQQLRLIDRG 443
Query: 215 -DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLIN 267
++V+TP L +D RRR+ F + ++Y+V DEAD +L F+ Q+ R+++
Sbjct: 444 CHLLVATPGRL---VDILERRRLSF-KNIQYLVLDEADRMLDMGFEPQIRRIVD 493
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 23/204 (11%)
Query: 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
++ T + D+VT+ + GL ++RAL SG+ RP+ +QAA++ V+ G+DV+ AA+TG+G
Sbjct: 5 TTSTAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTG 64
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSA 191
KT + +P+I+ L L ++ S S P R P +L+L P L +QV +
Sbjct: 65 KTAGFSLPIIQNL---LPEANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAK 116
Query: 192 DNGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +
Sbjct: 117 YTA---LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRML 169
Query: 246 VFDEADMLLCGSFQNQVIRLINMF 269
V DEAD +L F + R+IN+
Sbjct: 170 VLDEADRMLDMGFLPDLQRIINLL 193
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQIERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|261195464|ref|XP_002624136.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
gi|239588008|gb|EEQ70651.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
Length = 628
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 17/188 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++L L RL++AL F +P+++QA ++ L GKDV+ A+TGSGKT +YL+P+++
Sbjct: 25 SFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-----LVR 199
+ +PT +L+L P L EQV + + SA G+ L +
Sbjct: 85 SIL--------QKKTNDPTHKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQ 136
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + PD+++STPA + NI+ ++ + ++V DEAD++L ++
Sbjct: 137 KVSDAVQRSILADLPDIVISTPARAVVNINSS----ALTLQHLTHLVIDEADLVLSYGYE 192
Query: 260 NQVIRLIN 267
+ L N
Sbjct: 193 EDMQSLAN 200
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID +V+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 400 SRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQ 448
>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 433
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ-----MFPDADWISGNYLHFHNPR 393
D RR+ K +Q +F +AT+P K A +LK+ + P + +
Sbjct: 169 DVRRIIKYIPAVRQTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVD---------I 219
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+++ V +V LI +K + A +VF+ T + K L+ AG++
Sbjct: 220 IEQAVYYVNKSNKVQLLIHLLKSKAIVSA-----LVFSRTKHGADKIVKSLEKAGLQAQA 274
Query: 454 YHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H + S R L NF+E K + V TD AARGID+ +SHVI D ++HR+G
Sbjct: 275 IHGNKSQNARQLALNNFKERKTRILVATDIAARGIDVEELSHVINFDLPEVPETYVHRIG 334
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG G+ S + ++L+ I++ PV
Sbjct: 335 RTGRAGLGGIAISFCAQEEKNLLKEIQKLISKSVPV 370
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+++L + + RAL G+ + +Q ++ +L G D++ A+TG+GKT ++ +P+++
Sbjct: 3 FENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPILQG 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + + S + +L+L P E +++A++ +R + + G
Sbjct: 63 LSSEQRNLKGSR--------QIQALILAPT---RELAIQIADSFETYGKHLGLRTLVIYG 111
Query: 206 G-QGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVR--GVKYVVFDEADMLLCGS 257
G P K D++V+TP LL+ I+ K FVR +KY V DEADM+L
Sbjct: 112 GVSQHPQTKSLNRGIDILVATPGRLLDLINQK------FVRLNSIKYFVLDEADMMLDMG 165
Query: 258 FQNQVIRLI 266
+ V R+I
Sbjct: 166 MIHDVRRII 174
>gi|404369513|ref|ZP_10974847.1| hypothetical protein CSBG_03368 [Clostridium sp. 7_2_43FAA]
gi|226914541|gb|EEH99742.1| hypothetical protein CSBG_03368 [Clostridium sp. 7_2_43FAA]
Length = 526
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 9/206 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + K +Q + +AT+P +K A +K PDA IS + + +
Sbjct: 165 DLEDIIKQLPSERQTLLFSATMPDQIRKLAKRYMK---PDAKHISIKKTSMTVSTISQNF 221
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV+ T+ +AL L+F +S ++F T V + + +++ G H D+
Sbjct: 222 FEVSHKTRFEALCRV----LDFDTPSS-AIIFCRTKKGVDELVEGMQSRGYVVEGMHGDM 276
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R +TL F+E V TD AARGID+ ++HVI D ++HR+GRT RA
Sbjct: 277 SQAHRLRTLKKFKEGSLNYLVATDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRA 336
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
+ G+ SL + ++ I+ K
Sbjct: 337 NREGIAYSLVSPKEYSMLKQIKSVTK 362
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 32/185 (17%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ + + +LGL D L++++ + GF +PS +QA ++ + G D++ A+TG+GKT ++
Sbjct: 2 NEIKFSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCG 61
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+I + G S +++L P L QV LS + + +
Sbjct: 62 IINHISKKSGLS---------------AIILAPTRELAIQVNDELKRLSKYDD---LTIL 103
Query: 202 AVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG PI +++V TP +L++I +R + +K++V DEAD +
Sbjct: 104 PVYGGD--PITNQIRALKRNVNIVVGTPGRVLDHI----KRGTIKLDQIKFLVLDEADEM 157
Query: 254 LCGSF 258
L F
Sbjct: 158 LNMGF 162
>gi|326476368|gb|EGE00378.1| ATP-dependent RNA helicase DBP9 [Trichophyton tonsurans CBS 112818]
gi|326484727|gb|EGE08737.1| ATP-dependent RNA helicase DBP9 [Trichophyton equinum CBS 127.97]
Length = 618
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ GL RL++AL + F +P++VQA ++ LSGKD++ A+TGSGKT +YL+P+++K
Sbjct: 26 FEDFGLDPRLLQALTSQNFSKPTLVQAEAIPLALSGKDILARAKTGSGKTAAYLIPILQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-----LVRA 200
+ +P +LVL P L +QV + A S + L +
Sbjct: 86 IL--------QKKAADPAHKSISTLVLVPTRELAQQVHKTVTAFSEFCSKDIRSGNLTQK 137
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
V+ + PD+++STPA + N++ + + VV DEAD+LL ++
Sbjct: 138 VSDAVQRALLADLPDIVISTPARAIVNVN----NSALVLDNISQVVIDEADLLLSYGYEQ 193
Query: 261 QVIRL 265
+ L
Sbjct: 194 DMQNL 198
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
+RGID +V+ V+ D T+A + HR+GRT RAG+ G+ S S
Sbjct: 392 SRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPS 438
>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
Length = 435
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 40/242 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
WK+LGL D L + P+ +Q ++ VL GKDV+ AETGSGKT ++ +P+++
Sbjct: 4 WKALGLVDTLCTTCIQLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQA 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L EN P R +L+L P L Q+ AL + G V+ + G
Sbjct: 64 LL------EN--------PQRYFALILTPTRELAFQISEQFEALGSSIG---VKCAVIVG 106
Query: 206 G-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G QG + KP +I++TP L+++++ + + R +K+++ DEAD +L F+
Sbjct: 107 GMDMHAQGLLLEKKPHIIIATPGRLVDHLENTKGFNL---RQIKFLIMDEADRILNMDFE 163
Query: 260 ---NQVIRLINMFRFD-------EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309
N+++R++ R K++ ++ + + P++++ S+ Q E LQ
Sbjct: 164 VEVNKILRVMPRERRTLLFSATMTKKVQKLQRASLRNPVKVEVST----KYQTVEKLQQY 219
Query: 310 YI 311
YI
Sbjct: 220 YI 221
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F T + +L+ G H +S +R L F+ K + + TD A+RG
Sbjct: 245 MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRG 304
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 305 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRI 356
>gi|365897083|ref|ZP_09435116.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
gi|365422196|emb|CCE07658.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
Length = 503
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R+ ++
Sbjct: 169 DIRKIVAKLPHKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTAERISQRA 224
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +KE R +VF T V + L+ AGI H +
Sbjct: 225 IQVDHTAKSAMLTQLLKEE-----PVDRALVFTRTKHGADKVVRGLEKAGIPAQAIHGNK 279
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ VSHV+ D ++HR+GRTAR
Sbjct: 280 SQNHRERTLAAFRS-GEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTAR 338
Query: 517 AGQYGLVTSL 526
AG G+ SL
Sbjct: 339 AGAEGVAISL 348
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ GL+D L RAL++ + P+ +QA ++ L G+DVV A+TG+GKT S+ +P++
Sbjct: 2 TSFQDFGLADALQRALKDENYQTPTPIQAQTIPLALEGRDVVGIAQTGTGKTASFALPIL 61
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADN 193
+L + +P P A LVL P L Q+ +R+++AL A
Sbjct: 62 HRLL---------QNRTKPQPKTARVLVLSPTRELSGQILDSFHAYGRHIRLSSAL-AIG 111
Query: 194 GEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
G P+ R V + +V+V+TP LL+ I + + V+++V DEAD +
Sbjct: 112 GVPMGRQVRTI------MPGVEVLVATPGRLLDLIQGNALK----LTSVEFLVLDEADRM 161
Query: 254 LCGSFQNQVIRLI 266
L F N + +++
Sbjct: 162 LDMGFINDIRKIV 174
>gi|345874413|ref|ZP_08826227.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
gi|417957560|ref|ZP_12600481.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343968096|gb|EGV36329.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343970686|gb|EGV38859.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
Length = 453
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 26/210 (12%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ + + +Q + +AT +K L Q F H+P E
Sbjct: 172 DIRKIMQMLPKQRQTLLFSATFAPPIRK-----LAQDF------------MHSPEQVEVA 214
Query: 399 IEVTVDTQVDALIEAVK--------ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
+ T + V+ I AV ERL + S+ +VF T +V VT+ L+ I
Sbjct: 215 AQNTTNANVEQHIIAVDTMRKRSLLERLILDLDISQVIVFCKTKQSVEHVTRDLQRRNIS 274
Query: 451 CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
H D S + R +TL F+E K V V TD AARG+DI + VI + T D++H
Sbjct: 275 AQAIHGDKSQQLRLETLNAFKEGKLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVH 334
Query: 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
R+GRT RAG G+ SL E+ + + ++I+
Sbjct: 335 RIGRTGRAGADGIAISLMDETEQKMFESIQ 364
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGL + ++ AL G+ +P+ +QAA++ L+G D++ AA+TG+GKT ++++P +E+
Sbjct: 4 FASLGLGNEIVSALSEQGYEQPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L +N+ P LVL P L +Q+ + N S PL R + G
Sbjct: 64 L------KRYANASTSPAMHPVRMLVLTPTRELADQIDQ--NIRSYIKNLPL-RHTVLFG 114
Query: 206 GQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G +++V+T LL++I K + V+ VV DEAD +L F
Sbjct: 115 GVNMDNQTKELRSGCEIVVATVGRLLDHIKQKNIN----LNKVEIVVLDEADRMLDMGFI 170
Query: 260 NQVIRLINMF 269
+ + +++ M
Sbjct: 171 DDIRKIMQML 180
>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 631
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 25/218 (11%)
Query: 62 AAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
A A +SD + +LGL +R++RAL + P+ VQA ++ LSG
Sbjct: 40 GGAIAHTESDTPNSDALNTTAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSG 99
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTA-------LGDSENSNSDKEPTP-PRAPS-LVL 172
+D+++ ++TGSGKT ++++P I+++ + + + P P P PS LVL
Sbjct: 100 RDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPSLLVL 159
Query: 173 CPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAAL 224
P L QV +A G L R V ++ GG +P PD+I++TP L
Sbjct: 160 TPTRELALQVT----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRL 215
Query: 225 LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
L++ID R + + +VFDEAD +L F + +
Sbjct: 216 LDHIDSGR----IDLSALDMLVFDEADRMLDMGFADDI 249
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V T
Sbjct: 323 ASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVAT 382
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 383 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 433
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF-VCTDAAARG 486
++F N V +T+ L G + H DL+ + R KT+ F+ F VC+D AARG
Sbjct: 278 IIFCNRKKDVDILTRSLNRHGFQSSALHGDLTQQHRTKTMEEFKNGEIQFLVCSDIAARG 337
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
ID+ ++SHV D A D++HR+GRT RAG+ G SL TE +++ ++ I
Sbjct: 338 IDVDHLSHVFNFDLPRQAEDYVHRIGRTGRAGRTGFAYSLATEDDKETIEAI 389
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
+ V + LGL ++RA++ G+ P+ +QA ++ +L +D+V A+TG+GKT S+
Sbjct: 29 TEHTVLFSDLGLCAPIMRAIDEIGYKTPTQIQAQAIPVILQKQDLVGIAQTGTGKTASFT 88
Query: 140 VPLIEKLCTALGDSENSNS-DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+P++E L + G + + EPT R ++ + N+ Q +++++AL GE +V
Sbjct: 89 LPILEILTSTKGRARMPRALILEPT--RELAIQVADNLKQYGQYLKLSHALLM-GGESIV 145
Query: 199 RAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
+ +G D+I++TP L++ D + + +K +V DEAD +L F
Sbjct: 146 EQKDIL-NRGV-----DIIIATPGRLMDLFD----KGAILLNQIKILVIDEADRMLDMGF 195
Query: 259 QNQVIRLINMF 269
V R+I+
Sbjct: 196 IPDVERIISFL 206
>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
Length = 537
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN-----YLHFHNPR 393
+R+ +Q + AT P ++ A + K + D ++ N + +PR
Sbjct: 280 IRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPR 339
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
KE+ L+E +K+ + + ++FA V + LK G
Sbjct: 340 GKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAA 388
Query: 454 YHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DLS ++R + L F+ K + + TD AARG+DIPNV VI F + D++HR+G
Sbjct: 389 IHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 448
Query: 513 RTARAGQYGLVTSLYTESNRDL 534
RT RAGQ G +L+TE + L
Sbjct: 449 RTGRAGQTGTAHTLFTEQEKHL 470
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L + D +
Sbjct: 128 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---MNDQKKRG-- 182
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G ++ V GG Q + K
Sbjct: 183 -------IQVLVISPTRELASQIYDNLIVLTDKVG---MQCCCVYGGVPKDEQRIQLKKS 232
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+V+TP LL+ + + V Y+V DEAD +L F+ + +I
Sbjct: 233 QVVVATPGRLLDLLQEGSVD----LSQVNYLVLDEADRMLEKGFEEDIKNII 280
>gi|123456838|ref|XP_001316151.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121898850|gb|EAY03928.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 570
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 21/199 (10%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
F+D V K+ + RL+ LE GF + + +QA S+ + + +D +I A TG+GKT S
Sbjct: 13 LFSD--VDIKAADIDSRLMSVLEKKGFSKLTNIQAESIKAINNSRDALICANTGTGKTLS 70
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL 197
YL+P+ L D + +L++ P LC Q+ + L +
Sbjct: 71 YLLPIFTNLAKEFPDIKREMG--------CLALIVVPTRELCLQIETVVQDLRSKMN--F 120
Query: 198 VRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ A + GG+ + K +VI++TP L ++ + ++ R Y V DEAD
Sbjct: 121 IVAGTLLGGEQTNVEKKALRKGLNVIITTPGRLTYHLQNSQNLTFDYFR---YFVLDEAD 177
Query: 252 MLLCGSFQNQVIRLINMFR 270
LL FQNQ++++IN+ +
Sbjct: 178 RLLSEGFQNQLVQIINLIK 196
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 450 ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
E Y H +L +R KT+ + K + CT+ AARGIDIP+V ++Q + D++
Sbjct: 349 EIYKLHGNLEQTDRNKTISKYTASKDALLFCTNVAARGIDIPDVQLIVQYEAPVETEDYV 408
Query: 509 HRVGRTARAGQYGL 522
HR+GRTAR G+ G+
Sbjct: 409 HRIGRTARIGEDGV 422
>gi|323507773|emb|CBQ67644.1| related to MAK5-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 946
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGG-----VFV 478
R++VF N++DA+ +T IL + CY H L ++R K L F+ + G V +
Sbjct: 619 RSLVFVNSIDAIRRLTPILAQLQVTCYPIHSQLQQKQRLKNLDRFRTFNRSGRSANCVLL 678
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
TD AARG+DIP+V HV+ SA ++HR GRTARAG G+ +L + L
Sbjct: 679 ATDVAARGLDIPSVEHVVHYQLPRSADTYVHRSGRTARAGSSGVALALIEPKEKTL 734
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 122/301 (40%), Gaps = 88/301 (29%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG------------------------ 121
W L L L RAL + GF +P+ +Q S+ P+ G
Sbjct: 244 WSHLPLHAALKRALAHKGFKKPTEIQNRSI-PLALGLQQEAASSDDSDDAAAANSSSSSR 302
Query: 122 --KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENS------NSDKEPTPPRAPSLVLC 173
+DVV ++TGSGKT +Y +P++ L ++EN+ S + PP +L+LC
Sbjct: 303 RKRDVVGVSQTGSGKTLAYGLPILNYL---FENAENAIASFSRPSTTDDVPPPLGALILC 359
Query: 174 PNVVLCEQV-------VRMANALSADNGE-------PLVR---AVAVCGG---------- 206
P L QV VR + +S+ G+ L+R VCGG
Sbjct: 360 PTRELALQVSSHLTEIVRASCLVSSTTGDEDEISHKKLLRRPQIAVVCGGMSEQKQRRLL 419
Query: 207 -----QGWPIGKPDVIVSTPAAL--LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
QG D+IV+TP L + +D R ++ +++V DEAD
Sbjct: 420 DGRSRQGDRKAGVDIIVATPGRLWEMTRLDDNLAAR---IKQTRFLVLDEAD-------- 468
Query: 260 NQVIRLINMFRFDEKQ--LSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317
R++ + F E + L+ +N S +P E + L Q D DE ++ + N
Sbjct: 469 ----RMVEVGHFAEMEHILNLVNRSEGRRPSEGKDGQLPQDD-DDESEVETHGVKPSANM 523
Query: 318 E 318
+
Sbjct: 524 Q 524
>gi|399072166|ref|ZP_10750181.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398042783|gb|EJL35752.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 494
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 10/209 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q +F +AT+P K AG +LK A S + R+ + I
Sbjct: 183 RKIASQLPKERQNLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVE----RIDQSLIF 238
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + L E + ++ R++VF T V K L +GIE H D +
Sbjct: 239 IEAQRKRPLLAELLADK-----SVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQ 293
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R + L F+ + + TD AARGID+ +VSHV + ++HR+GRTAR G+
Sbjct: 294 GQRERALAAFKAGQVKALIATDIAARGIDVNDVSHVFNFELPNVPESYVHRIGRTARKGK 353
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G+ S + R+L+ I++A + P
Sbjct: 354 EGVAISFCADDERNLLRDIQKATRQTIPT 382
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 27/185 (14%)
Query: 83 NVT-WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
N+T + L L+ L++AL + G+ P+ +QA ++ V+SG+D++ A+TG+GKT ++ +P
Sbjct: 12 NLTQFTDLALAKPLLKALTDKGYTTPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALP 71
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
++ +L DK+P P R LVL P L Q+ A++ D G+ +
Sbjct: 72 ILHRLA----------EDKKPAPRRGFRCLVLSPTRELATQI---ADSFR-DYGKHMGLT 117
Query: 201 VA-VCGGQGW-PIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
VA + GG + P K DV+V+TP L++++ K + GV+ V DEAD +
Sbjct: 118 VATIFGGVKYGPQMKALAAGVDVVVATPGRLMDHLGEK----SAHLNGVEIFVLDEADQM 173
Query: 254 LCGSF 258
L F
Sbjct: 174 LDLGF 178
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 34/230 (14%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LGLS+ L+ A E G+ P +Q ++ L GKDV+ A+TGSGKT ++ +
Sbjct: 6 EETKTFKDLGLSESLVEACEKLGWKNPLKIQTEAIPLALEGKDVIGLAQTGSGKTGAFAL 65
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L A P P + VL P L Q+ AL ++ G V+
Sbjct: 66 PILHALLEA------------PRPKDFFACVLSPTRELAIQIAEQFEALGSEIG---VKC 110
Query: 201 VAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q I K P +IV TP +++++ K + R +KY+V DEAD LL
Sbjct: 111 AVLVGGIDMVQQSIKIAKQPHIIVGTPGRVIDHL--KHTKGFSLSR-LKYLVLDEADRLL 167
Query: 255 CGSFQ---NQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSS 294
F+ N+++++I F F K++ ++ + P++++ SS
Sbjct: 168 NEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIEASS 217
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
S +MVF T DA + IL+ G++ + +S +R L F+ + + +CTD A
Sbjct: 251 STSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVA 310
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 311 SRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 356
>gi|225713694|gb|ACO12693.1| ATP-dependent RNA helicase T26G10.1 [Lepeophtheirus salmonis]
Length = 233
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 107/208 (51%), Gaps = 30/208 (14%)
Query: 70 DKNGSSDTFFAD----DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVV 125
D+ S ++ F D D T+ LGL++ L A E+ G+ PS +Q ++ L+G+D++
Sbjct: 16 DETNSKESPFQDEKEEDTTTFSDLGLTEVLCEACESLGWKTPSKIQKEAIPVALTGRDII 75
Query: 126 IAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185
AETGSGKT ++ +P+++ L P R +LVL P L Q+
Sbjct: 76 GLAETGSGKTAAFALPVLQSLLEK--------------PQRFFALVLTPTRELAYQISEQ 121
Query: 186 ANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFV 239
L G V+ V + GG Q +G KP +I++TP L+++++ + +
Sbjct: 122 FEKLGKSIG---VKCVVLVGGMDMVSQALVLGKKPHIIIATPGRLIDHMENTKGFDL--- 175
Query: 240 RGVKYVVFDEADMLLCGSFQNQVIRLIN 267
R +KY++ DEA+ +L F+ +V ++++
Sbjct: 176 RSLKYLIMDEANRILNMDFEIEVDKILS 203
>gi|170578156|ref|XP_001894291.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158599187|gb|EDP36872.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 599
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K GL ++L++ + G+ RP+++Q+ + K+++ A TGSGKT ++++PL+
Sbjct: 73 MTFKDFGLDEQLLKVIGEFGWERPTLIQSRMIPTAFENKNILARARTGSGKTAAFMLPLV 132
Query: 144 EKLCTALGDSENSNSDKEPTPPR-APSLVLCPNV--VLCEQVVRMANALSADNGEPLVRA 200
+K+ L + +SN D P PS L +LC+ + +S + E
Sbjct: 133 QKVLQ-LKCNSSSNGDAGPFAVFIVPSKELAKQTYSLLCKLTEKFPFLMSLNFAE----- 186
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
+ V GW + KPD +VSTP LL+ + ++ + VK+VV DEAD+LL +
Sbjct: 187 LNVNTDDGWLLKKPDFVVSTPGRLLHAL----KKYGKPCESVKHVVLDEADLLLSFGYAE 242
Query: 261 QVIRLINMF 269
+ +RLI F
Sbjct: 243 E-MRLIKNF 250
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 26/183 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ +GL + +A+E GF +P+ +Q ++ ++ GKDVV + TGSGKT ++++P+++K
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ T RA L++ P L Q ++ L G +R + G
Sbjct: 86 L-----------KRRDTTGIRA--LMVSPTRELALQTFKVVKELGRFTG---LRCACLVG 129
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + PD++++TP LL+ I R + V+YVVFDEAD L FQ
Sbjct: 130 GDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLR----LSYVQYVVFDEADRLFEMGFQ 185
Query: 260 NQV 262
+Q+
Sbjct: 186 DQL 188
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD 481
E +T+VF T+ V V IL AGI+C + L R + F EK + V TD
Sbjct: 264 ENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTD 323
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DIP + VI F A F+HRVGR ARAG+ G SL
Sbjct: 324 VAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISL 368
>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
Length = 940
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 43/237 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 94 FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T A L+L P+ L Q +++ L G L + V + G
Sbjct: 154 LKN------------HSTKVGARGLILSPSRELALQTLKVVKELG--RGTDL-KCVLLVG 198
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G G+ G PD+I++TP L+ ++E + ++Y VFDEAD L
Sbjct: 199 GDSLEEQFGYMAGNPDIIIATPGRFLH-------LKVEMSLDLSSIRYAVFDEADRLFEM 251
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 252 GFAAQLTEILHALPSSRQTLLFSATLPKSLVEFARAGLQEPVLIRLDADSKISPDLQ 308
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + +L+ +G + L+ R + NF+ + V TD AAR
Sbjct: 378 TIVFVATKHHVEYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAAR 437
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + ++HRVGRTARAGQ G SL +S+
Sbjct: 438 GIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSD 483
>gi|303273436|ref|XP_003056079.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462163|gb|EEH59455.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 598
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
++ W SLGL ++RAL F P+ VQ+ ++ VL+GKDV+ A TGSGKT +YL+P
Sbjct: 5 NDTGWPSLGLDRGILRALAKKKFKCPTAVQSRAIPLVLAGKDVLARAHTGSGKTAAYLLP 64
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
I K+ SN PR L+L P L +QV++ A + + L
Sbjct: 65 AIHKIMQRSDSKTKSN-------PRV--LILVPTHELAQQVMKEAVSFLVECAPTLRAGE 115
Query: 202 AVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
C G + + P+++VSTP+ + I + G+++ V DEAD+LL
Sbjct: 116 LTCSGSADVLPRNFAGVPPEILVSTPSRVAACIRGGKFPPRALNSGLEFFVLDEADLLLS 175
Query: 256 GSFQNQV 262
+++ +
Sbjct: 176 FGYEDDI 182
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R + +R Q + V+AT P + K VL + N++ + R+KE+
Sbjct: 181 DIRCIADATERGCQCMLVSATSPDDLSKLKAIVLHNPVNVDIALENNFV---SGRVKEEQ 237
Query: 399 IEVTVDTQVDALIE----AVKER---------LEFGAETSRTMVFANTVDAVYAVTKILK 445
+ T + V LI + E+ L G +++VF ++ DA + L
Sbjct: 238 V-TTGKSAVMPLISHYALEILEKDKLLYCMALLRLGLCKKKSLVFVSSPDAAVRLRLFLH 296
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAA--------------------- 484
GI C H++L RA L F GV+ AAA
Sbjct: 297 KFGIPCCVLHEELPANSRAHILHEFNR--GVYDYMIAAADDLSSSISVVNDDNKDFTKHT 354
Query: 485 -----------------RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
RGID +V V+ D SA D++HRVGRT RAGQ G +L
Sbjct: 355 KRKRNAMSHAQTEFGVVRGIDFKDVHTVLNLDVPISASDYIHRVGRTGRAGQPGTAITLT 414
Query: 528 TESN-RDLVDTIRR 540
T N R L D + R
Sbjct: 415 TPKNARALEDMLSR 428
>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
holarctica FSC022]
Length = 441
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSGVIFG 109
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 21/185 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ SLGLSD L + G+ P+ +Q ++ VL G D++ AAETGSGKT +++PL+
Sbjct: 1 MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL + N +LVL P L QV + + S +N +R+VA+
Sbjct: 61 EKLHSIPAPGNNLTH----------ALVLVPTRELAVQVSQSVDRYS-ENCPRKIRSVAI 109
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K D++V+TP LL+ + R+ +RG+K +V DEAD +L
Sbjct: 110 YGGAAINPQMQSLSKGCDIVVATPGRLLDLM----RKNALDLRGLKALVLDEADRMLDLG 165
Query: 258 FQNQV 262
F +++
Sbjct: 166 FADEL 170
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
+L ++ IEV + + L +K+ + + ++F + + L +GI+
Sbjct: 219 QLHQRAIEVDRNNRTMLLKHLIKQE-----KWQQLLIFVGSKRTANNIELKLYRSGIQSS 273
Query: 453 CYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H DL+ +ER L +F + + + + TD AARGIDIP++ V+ D + D++HR
Sbjct: 274 TLHGDLTQKERLGALEDFSKGRCKILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRA 333
Query: 512 GRTARAGQYGLVTSL 526
GRTARAG+ GL S
Sbjct: 334 GRTARAGEAGLAISF 348
>gi|421872322|ref|ZP_16303941.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
gi|372458934|emb|CCF13490.1| DEAD/DEAH box helicase family protein [Brevibacillus laterosporus
GI-9]
Length = 409
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN-------YLHFHNPRLK 395
V + R Q +F +ATL K A++K M + I+ LHF+ L
Sbjct: 168 VLRRLMRDTQRLFFSATL----SKQTQALIKSMAHEPVVIATEAPESKYEVLHFY---LV 220
Query: 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
E+ + DAL RL +T+VF NT++ V + + L +EC H
Sbjct: 221 EEG-----RKKADAL-----RRLIRLVNAKKTLVFLNTIERVDEIKEKLTYHHLECELLH 270
Query: 456 KDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
+D +RA+ L F+E K V + TD AARGIDI +V VI D AT A ++HR GRT
Sbjct: 271 RDTPKVDRARALQQFREGKLPVLIVTDVAARGIDISDVELVIHYDPATDADTYVHRSGRT 330
Query: 515 ARAGQYGLVTSLYTESNRDLV 535
R G+ GLV S+ + R ++
Sbjct: 331 GRMGKAGLVFSIVLPNQRFII 351
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 27/184 (14%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L G+ + + +QA ++ +L GKDV+ + TGSGKT +YL+PL++ L
Sbjct: 17 LRERGYEKLTPIQAQTLPAILEGKDVIAESPTGSGKTMAYLLPLVQNL------------ 64
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIGK--- 213
+ T LVL P L Q+ R A L A G + A A+ GG + K
Sbjct: 65 --DETKKELQVLVLAPTQELVMQIYREATQLLASIG---MHAAALIGGVDAKRQLDKLKT 119
Query: 214 -PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272
P +++ TP + ++ ++ + V VK VV DEAD +L F N V ++ D
Sbjct: 120 HPAIVIGTPGRVKELLEMRKLK----VHTVKSVVIDEADRMLDRGFANPVQDVLRRLMRD 175
Query: 273 EKQL 276
++L
Sbjct: 176 TQRL 179
>gi|156060651|ref|XP_001596248.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980]
gi|160409986|sp|A7EAY2.1|MAK5_SCLS1 RecName: Full=ATP-dependent RNA helicase mak5
gi|154699872|gb|EDN99610.1| hypothetical protein SS1G_02468 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 780
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 11/190 (5%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W L LS + AL GF +P+ +Q+ ++ VL+G DVV A TGSGKT ++ +P++EK
Sbjct: 215 WVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEK 274
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV-AVC 204
G+ + K PP A L+L P L Q+ L G P V AV
Sbjct: 275 WLEVYGELDEDELKKSTRPPTA--LILSPTRELAHQLTEHITTLC--KGMPTSPYVAAVT 330
Query: 205 GG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GG Q + K D+I+ TP L I ++ V+++V DEAD LL
Sbjct: 331 GGLSVQKQQRQLSKADIIIGTPGRLWEVISSSNELSA-GLKQVRFLVIDEADRLLTDGHF 389
Query: 260 NQVIRLINMF 269
+ ++N
Sbjct: 390 KEAEEILNAL 399
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF---QEKGGVFVCTDA 482
RT++F N++ +V +T +L+T I + H + + R +++ F G V V TD
Sbjct: 505 RTLIFTNSIHSVRRLTPMLQTLNIPAHSLHSQMIQKARMRSIEKFSRTNNTGSVLVATDV 564
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
AARG+DI V VI +A ++HR GRTARA G +S+ ++V T R A
Sbjct: 565 AARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASG--SSILLCGPEEVVGTRRLVA 622
Query: 543 KL 544
K+
Sbjct: 623 KV 624
>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|422938927|ref|YP_007012074.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|407294078|gb|AFT92984.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
Length = 441
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|374572806|ref|ZP_09645902.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374421127|gb|EHR00660.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 505
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R++++
Sbjct: 175 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTVERIQQRI 230
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ + +R +VF T V K L+ AGI H +
Sbjct: 231 IQVDFSAKPAFLAQLLKQE-----QVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNK 285
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ ++HVI D ++HR+GRTAR
Sbjct: 286 SQNHRERTLAQFR-TGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTAR 344
Query: 517 AGQYGLVTSL 526
AG G SL
Sbjct: 345 AGAEGTAISL 354
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ GL++ + RAL + P+ +QA ++ L+G+DVV A+TG+GKT S+ +P++
Sbjct: 8 TSFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPIL 67
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L EN +P P A LVL P L Q++ NA +R +
Sbjct: 68 HRLL------ENR---IKPQPKTARVLVLSPTRELSGQILDSFNAYGRH-----IRLSST 113
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G P+G+ +V+V+TP LL+ + + + V+++V DEAD +L
Sbjct: 114 LAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLK----LGSVEFLVLDEADRMLD 169
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F N + +++ + L
Sbjct: 170 MGFINDIRKIVAKLPIKRQTL 190
>gi|289550302|ref|YP_003471206.1| cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|385783930|ref|YP_005760103.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|418415253|ref|ZP_12988459.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418635602|ref|ZP_13197976.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
lugdunensis M23590]
gi|339894186|emb|CCB53451.1| putative helicase [Staphylococcus lugdunensis N920143]
gi|374841707|gb|EHS05164.1| DEAD/DEAH box helicase [Staphylococcus lugdunensis VCU139]
gi|410875260|gb|EKS23185.1| hypothetical protein HMPREF9308_01624 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 504
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 32/181 (17%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K LG+S++ ++ LEN GF P+ +Q S+ L G+D++ A+TG+GKT ++ +PLIEK
Sbjct: 4 FKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ G SL+L P L QV S V+ V V G
Sbjct: 64 VVNKSG---------------VQSLILAPTRELAMQVAEQLREFSRGQN---VQVVTVFG 105
Query: 206 GQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
G PI + P ++V TP ++++++ RR G+ ++ DEAD ++
Sbjct: 106 --GMPIDRQIKALKKGPQIVVGTPGRVIDHLN----RRTLKTNGIHTLILDEADEMMNMG 159
Query: 258 F 258
F
Sbjct: 160 F 160
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 404 DTQVDALIEAVKERLEFGAETS--------RTMVFANTVDAVYAVTKILKTAGIECYCYH 455
D Q+D VKE +F T+ +VF T V +T L + G + H
Sbjct: 212 DPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLH 271
Query: 456 KDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R + L F+ ++ + V TD AARG+DI VSHV D + HR+GRT
Sbjct: 272 GDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRT 331
Query: 515 ARAGQYGLVTSLYTESNRDLVDTI-----RRAAKLGQP 547
RAG+ G+ + D + I RR L P
Sbjct: 332 GRAGKEGIAVTFVNPIEMDYIRQIEEVNSRRMTALRPP 369
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 26/183 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ +GL + +A+E GF +P+ +Q ++ ++ GKDVV + TGSGKT ++++P+++K
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++ T RA L++ P L Q ++ L G +R + G
Sbjct: 86 L-----------KRRDTTGIRA--LMVSPTRELALQTFKVVKELGRFTG---LRCACLVG 129
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + PD++++TP LL+ I R + V+YVVFDEAD L FQ
Sbjct: 130 GDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLR----LSYVQYVVFDEADRLFEMGFQ 185
Query: 260 NQV 262
+Q+
Sbjct: 186 DQL 188
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD 481
E +T+VF T+ V V IL AGI+C + L R + F EK + V TD
Sbjct: 264 ENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTD 323
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARG+DIP + VI F A F+HRVGR ARAG+ G SL
Sbjct: 324 VAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISL 368
>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
Length = 441
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 72 NGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETG 131
G S ADD VT+ L ++ ++RA+ + G+ PS +QAA++ P+L+G DVV A+TG
Sbjct: 11 TGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTG 70
Query: 132 SGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191
+GKT ++ +P++ K+ D++ +LVL P L QV A
Sbjct: 71 TGKTAAFAIPILSKIDLTSKDTQ--------------ALVLAPTRELALQVSEAFGRYGA 116
Query: 192 DNGEPLVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245
P + + + GGQ + + V+V TP ++++++ R + + Y+
Sbjct: 117 HM--PKLNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLE----RGTLDLSHLDYL 170
Query: 246 VFDEADMLLCGSFQNQVIRLI 266
V DEAD +L F V R++
Sbjct: 171 VLDEADEMLTMGFAEDVERIL 191
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + KQ +AT+P ++ + K+ D I + + ++
Sbjct: 185 EDVERILADTPEYKQVALFSATMPTTIRR----LTKKYLHDPVEIKIDAKTSTAENITQR 240
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+I+V ++DAL ++ ET M VF T A V LK G +
Sbjct: 241 FIQVAGPRKMDALTRILE------VETFEAMIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 457 DLSLEERAKTLVNFQEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D++ +R +T +N + G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 295 DINQSQRERT-INALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRT 353
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRR--AAKLGQ 546
RAG+ G + R L+ I + AKL +
Sbjct: 354 GRAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAE 387
>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
Length = 512
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++ L++ + + E GA +T++F T +++ ++ G C H D + +ER
Sbjct: 312 ENKLNVLLQEIGQSQEPGA---KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 368
Query: 464 AKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+ L F+E + + V TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 369 DEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 428
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV ++ A ++ P
Sbjct: 429 SYAFFTPSNSRQAKDLVSVLQEANQIISP 457
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 30/194 (15%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D + + ++ G+ P+ +QA +SGK++V A+TGSGKT +Y++P I +
Sbjct: 89 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI------ 142
Query: 153 SENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG-- 206
+ +P R +LVL P L +Q+ ++A AD G VR V GG
Sbjct: 143 ------NNQPPIRRGDGPIALVLAPTRELAQQIQQVA----ADFGHTSYVRNTCVFGGAP 192
Query: 207 ---QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
Q + + +++++TP L++ ++ + ++ Y+V DEAD +L F+ Q+
Sbjct: 193 KREQARDLERGVEIVIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEPQI 248
Query: 263 IRLINMFRFDEKQL 276
++I R D + L
Sbjct: 249 RKIIEQIRPDRQTL 262
>gi|456358119|dbj|BAM92564.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain,
RhlE protein [Agromonas oligotrophica S58]
Length = 471
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R+ ++
Sbjct: 169 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTVERIAQRV 224
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + + L + +K+ +R +VF T V K L+ AGI H +
Sbjct: 225 IQVDHSAKPNLLAQLLKQE-----PVNRALVFTRTKHGADKVVKSLEKAGIPAQAIHGNK 279
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ VSHV+ D ++HR+GRTAR
Sbjct: 280 SQNHRERTLAAFR-TGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTAR 338
Query: 517 AGQYGLVTSL 526
AG G+ SL
Sbjct: 339 AGAEGVAISL 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 32/203 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L+D L RAL+ + P+ +QA ++ L G+DVV A+TG+GKT S+ +P++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVVGIAQTGTGKTASFALPILH 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADNG 194
+L EN +P P A LVL P L Q+ +R+++AL A G
Sbjct: 63 RLL------ENR---IKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSAL-AIGG 112
Query: 195 EPLVRAV-AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
P+ R V AV G +V+V+TP LL+ + + + V+++V DEAD +
Sbjct: 113 VPMGRQVRAVMPGL-------EVLVATPGRLLDLVQGNALK----LSHVEFLVLDEADRM 161
Query: 254 LCGSFQNQVIRLINMFRFDEKQL 276
L F N + +++ + L
Sbjct: 162 LDMGFINDIRKIVAKLPIKRQTL 184
>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
6260]
Length = 666
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
S+Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 390 SRQTLMFSATFPRDIQMLARDFLK----DYIFLSVGRVGSTSENITQKVLYVEDDEKKSV 445
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ + + T++F T + L G H D S ER K L
Sbjct: 446 LLDLLSAN-----DNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAA 500
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V T AARG+DIPNVSHV+ D D++HR+GRT RAG G+ T+ +
Sbjct: 501 FKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFN 560
Query: 529 ESNRDLV 535
+NR++V
Sbjct: 561 RNNRNVV 567
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT----AL 150
++ ++ S F +P+ VQ SV V SG+D++ A+TGSGKT +L P++ + A+
Sbjct: 209 IVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAV 268
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
+S+ + S + P +LV+ P L Q+ A S + VR V GG
Sbjct: 269 PESQGAFSSHKVHP---TALVMAPTRELVSQIFEEAKKFSYRS---WVRPCVVYGGAD-- 320
Query: 211 IGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
IG D++V+TP L + ++ R R+ + +KY+V DEAD +L F+ Q+
Sbjct: 321 IGTQIRNLDRGCDLLVATPGRLKDLLE---RGRVS-LSNIKYLVLDEADRMLDMGFEPQI 376
Query: 263 IRLI 266
++
Sbjct: 377 RHIV 380
>gi|421888857|ref|ZP_16319933.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
gi|378965799|emb|CCF96681.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
Length = 597
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 25/191 (13%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGL +R++RAL + P+ VQA ++ LSG+D+++ ++TGSGKT ++++P I+++
Sbjct: 35 LGLDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISE 94
Query: 149 A-------LGDSENSNSDKEPTP-PRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+ + + P P P PS LVL P L QV +A G L R
Sbjct: 95 QPEPQRPRMDGAPQRIKGRRPRPAPAKPSLLVLTPTRELALQVT----TATAQYGRHLRR 150
Query: 200 AV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V ++ GG +P PD+I++TP LL++ID R + + +VFDEAD
Sbjct: 151 IVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFDEAD 206
Query: 252 MLLCGSFQNQV 262
+L F + +
Sbjct: 207 RMLDMGFADDI 217
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V T
Sbjct: 291 ASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|367474852|ref|ZP_09474344.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
gi|365272847|emb|CCD86812.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
Length = 469
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A ++L+ D ++ + R+ ++
Sbjct: 169 DIRKIVAKLPIKRQTLFFSATMPKDIAELADSMLR----DPARVAVTPVSSTVERIAQRV 224
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + + L + +KE +R +VF T V K L+ AGI H +
Sbjct: 225 IQVDHSAKPNLLAQLLKEE-----PVNRALVFTRTKHGADKVVKSLEKAGIPAQAIHGNK 279
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R +TL F+ + V TD AARGID+ VSHV+ D ++HR+GRTARA
Sbjct: 280 SQNHRERTLAAFRTGEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARA 339
Query: 518 GQYGLVTSL 526
G G+ SL
Sbjct: 340 GAEGVAISL 348
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 32/203 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L+D L RAL+ + P+ +QA ++ L G+DV+ A+TG+GKT S+ +P++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADNG 194
+L EN +P P A LVL P L Q+ +R+++ L A G
Sbjct: 63 RLL------ENR---IKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTL-AIGG 112
Query: 195 EPLVRAV-AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
P+ R V AV G DV+V+TP LL+ + + + V+++V DEAD +
Sbjct: 113 VPMGRQVRAVMPGV-------DVLVATPGRLLDLVQGNALK----LSHVEFLVLDEADRM 161
Query: 254 LCGSFQNQVIRLINMFRFDEKQL 276
L F N + +++ + L
Sbjct: 162 LDMGFINDIRKIVAKLPIKRQTL 184
>gi|223590230|sp|A5DQS0.3|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
Length = 637
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
S+Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 361 SRQTLMFSATFPRDIQMLARDFLK----DYIFLSVGRVGSTSENITQKVLYVEDDEKKSV 416
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ + + T++F T + L G H D S ER K L
Sbjct: 417 LLDLLSAN-----DNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAA 471
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V T AARG+DIPNVSHV+ D D++HR+GRT RAG G+ T+ +
Sbjct: 472 FKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFN 531
Query: 529 ESNRDLV 535
+NR++V
Sbjct: 532 RNNRNVV 538
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT----AL 150
++ ++ S F +P+ VQ SV V SG+D++ A+TGSGKT +L P++ + A+
Sbjct: 180 IVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAV 239
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
+S+ + S + P +LV+ P L Q+ A S + VR V GG
Sbjct: 240 PESQGAFSSHKVHP---TALVMAPTRELVSQIFEEAKKFSYRS---WVRPCVVYGGAD-- 291
Query: 211 IGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
IG D++V+TP L + ++ R R+ + +KY+V DEAD +L F+ Q+
Sbjct: 292 IGTQIRNLDRGCDLLVATPGRLKDLLE---RGRVS-LSNIKYLVLDEADRMLDMGFEPQI 347
Query: 263 IRLI 266
++
Sbjct: 348 RHIV 351
>gi|405966818|gb|EKC32055.1| Putative ATP-dependent RNA helicase DDX5 [Crassostrea gigas]
Length = 677
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 111/216 (51%), Gaps = 18/216 (8%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNP-RLKE 396
R++ + + +Q + +AT P + +K A LK Q+ A +S N HN ++ +
Sbjct: 296 RKIVEQIRPDRQTLMWSATWPKDVRKLAEDFLKEYIQLNIGALQLSAN----HNILQIID 351
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
E + ++ L+E + + E ++T++F T +T+ ++ G C H
Sbjct: 352 VCDENEKEFKLTKLLEEIMQEKE-----NKTLIFTETKRKADEITRRMRREGWPMMCIHG 406
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D S +ER L F+ + + V TD A+RG+D+ ++ VI D+ +S+ D++HR+GRTA
Sbjct: 407 DKSQQERDWVLNGFRSGQTPILVATDVASRGLDVGDIKFVINFDYPSSSEDYVHRIGRTA 466
Query: 516 RAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
RAGQ G + +T N DL+ ++ A ++ P
Sbjct: 467 RAGQTGTAYTFFTPDNVKQANDLISVLQEAKQVVNP 502
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 40/222 (18%)
Query: 76 DTFFADDNVTWKSLGLS------------DRLIRALENSGFGRPSIVQAASVGPVLSGKD 123
D F+ + VT K G+ D ++ G+ RP+ +Q S +SG+D
Sbjct: 107 DQFYNEHQVTVKGTGIPKPIFAFEEGGFPDYVMSTFRRLGWTRPTSIQTVSWPVAMSGRD 166
Query: 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQV 182
VV A+TGSGKT ++VP I + N P P LVL P L +QV
Sbjct: 167 VVGIAQTGSGKTAGFIVPSIVHI----------NHQPHLQPHDGPIVLVLVPTRELAQQV 216
Query: 183 VRMANALSADNGEPLVRAVAVCGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRR 234
+AN + +R V V GG P G ++ ++TP L++ ++ +
Sbjct: 217 QEVANDFGHAS---RIRNVCVYGGA--PKGPQIRDLERGAEICIATPGRLIDFLEAGKTN 271
Query: 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
+R Y+V DEAD +L F+ Q+ +++ R D + L
Sbjct: 272 ----LRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTL 309
>gi|393221845|gb|EJD07329.1| ATP-dependent RNA helicase dbp9 [Fomitiporia mediterranea MF3/22]
Length = 633
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 15/200 (7%)
Query: 75 SDTFFADDNVTWKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGS 132
+D D T+ SL L RL+RAL + GF RP++VQA ++ L G+D++ A TGS
Sbjct: 2 TDVSLLDSQATFASLTHVLDARLLRALADMGFARPTLVQAQAIPLALEGRDILARARTGS 61
Query: 133 GKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD 192
GKT SY VPL +K+ +++ S ++P +LVL P L +QV + L A
Sbjct: 62 GKTASYCVPLAQKILR----KKDAFSIEDPARQAVRALVLVPTKELADQVAKHLRQLLAY 117
Query: 193 NGEPLVRAVAVCGGQG-----WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
+ +V V G KPD+++ TP+ L+ + K + ++ +V
Sbjct: 118 CEKEIVVVNLVSGTSTHLQRVLTSEKPDIVIGTPSRALSALQVKALS----LSDLESLVI 173
Query: 248 DEADMLLCGSFQNQVIRLIN 267
DEAD++L + +IN
Sbjct: 174 DEADLVLSYGHDEDIRTVIN 193
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
RG+D +V+ V+ D TSA + HRVGRTARAG+ G+ S
Sbjct: 406 RGVDFIDVACVLNFDLPTSARAYTHRVGRTARAGRTGMALSF 447
>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
Length = 416
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L L+RA+E G+ RP++VQA ++ L GKDV+ +A TG+GKT ++L+P+I+
Sbjct: 4 FSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L K P P R L+L P L QV A AL+ ++ + G
Sbjct: 64 L--------QDFPRKRPGPARI--LILTPTRELAIQVADQARALAKYTT---LKVFTITG 110
Query: 206 GQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G + +GK D++V+TP L+ I+ ++ F R ++ ++ DEAD +L F
Sbjct: 111 GISYDEHAEMLGKTQDIVVATPGRLMEYIEAEK-----FDCRAIECLILDEADRMLDMGF 165
Query: 259 QNQVIRLINMFRFDEKQL 276
V RL + R+ + L
Sbjct: 166 GKIVERLNHECRWRRQSL 183
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
+D ++ L +KE+ E RT++F T + + + L+ GI C +++
Sbjct: 230 MDHKLALLENIIKEQAE------RTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAA 283
Query: 463 RAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
R + F++ V + TD AARGID+P+VSHVI D +A ++HR+GRTARAG+ G
Sbjct: 284 RTNMITRFRDGVVNVLIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKG 343
Query: 522 LVTSLYTESNRDLVDTIRRAAK 543
SL ++ +++ I R K
Sbjct: 344 TAISLVEAHDQSMIERISRYMK 365
>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
6260]
Length = 666
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
S+Q + +AT P + + A LK D ++S + + + +K + V D +
Sbjct: 390 SRQTLMFSATFPRDIQMLARDFLK----DYIFLSVGRVGSTSENITQKVLYVEDDEKKSV 445
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ + + T++F T + L G H D S ER K L
Sbjct: 446 LLDLLSAN-----DNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAA 500
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V T AARG+DIPNVSHV+ D D++HR+GRT RAG G+ T+ +
Sbjct: 501 FKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFN 560
Query: 529 ESNRDLV 535
+NR++V
Sbjct: 561 RNNRNVV 567
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT----AL 150
++ ++ S F +P+ VQ SV V SG+D++ A+TGSGKT +L P++ + A+
Sbjct: 209 IVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNGPDAV 268
Query: 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP 210
+S+ + S + P +LV+ P L Q+ A S + VR V GG
Sbjct: 269 PESQGAFSSHKVHP---TALVMAPTRELVSQIFEEAKKFSYRS---WVRPCVVYGGAD-- 320
Query: 211 IGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
IG D++V+TP L + ++ R R+ + +KY+V DEAD +L F+ Q+
Sbjct: 321 IGTQIRNLDRGCDLLVATPGRLKDLLE---RGRVS-LSNIKYLVLDEADRMLDMGFEPQI 376
Query: 263 IRLI 266
++
Sbjct: 377 RHIV 380
>gi|403213513|emb|CCK68015.1| hypothetical protein KNAG_0A03280 [Kazachstania naganishii CBS
8797]
Length = 607
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P + + A L+ PD ++S + + + ++ + V + AL
Sbjct: 342 RQTLMFSATFPADIQHLARDFLR---PDYIFLSVGKVGSTSENITQRVMYVESMDKKSAL 398
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ + +E T++F T +T L + H D + ER + L F
Sbjct: 399 LDLLAS-----SEPGLTLIFVETKRMADQLTDFLIMQNLRATAIHGDRTQSERERALAAF 453
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ + + V T AARG+DIPNV+HVI D D++HR+GRT RAG GL T+ +
Sbjct: 454 KSGRANILVATAVAARGLDIPNVTHVINYDLPGDIDDYVHRIGRTGRAGNTGLATAFFNR 513
Query: 530 SNRDLV 535
N ++V
Sbjct: 514 DNGNIV 519
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 24/188 (12%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLIE---KL 146
L D L+ ++ + F +P+ VQ S+ P++S G+D++ A+TGSGKT +L P++ K+
Sbjct: 156 LDDLLMENVKLARFTKPTPVQKYSI-PIISIGRDLMACAQTGSGKTGGFLFPVLSESFKV 214
Query: 147 CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
++ S + P A +++ P L Q+ A + V V GG
Sbjct: 215 GPSVVQGNEGYSYQRKAYPTA--VIMAPTRELATQIFDEAKKFCYRS---WVNPCVVYGG 269
Query: 207 QGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
PIG D++V+TP L + I+ R + VKY+V DEAD +L F
Sbjct: 270 A--PIGNQLREMDRGCDLLVATPGRLSDMIE----RGKISLSNVKYLVLDEADRMLDMGF 323
Query: 259 QNQVIRLI 266
+ Q+ +++
Sbjct: 324 EIQIRQIV 331
>gi|394988530|ref|ZP_10381365.1| dead/deah box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393791909|dbj|GAB71004.1| dead/deah box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 352
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 108/185 (58%), Gaps = 23/185 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++++ L L+ +++A+ +SG+ PS +QAA++ VL+G D++ +A+TG+GKT ++++P +
Sbjct: 1 MSFEKLNLNPAILQAIADSGYTEPSPIQAAAIPEVLAGHDLMASAQTGTGKTAAFILPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L +E S S + PR LVL P L QV A S V+ V++
Sbjct: 61 QYL------TEPSQSKSK--GPRI--LVLTPTRELANQVNDAARKYSK---HMRVKTVSI 107
Query: 204 CGGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +P + +P D++V+TP L++++D R R++F R ++ +V DEAD +L
Sbjct: 108 LGGMPYPLQNKLLSQPVDILVATPGRLIDHLD---RGRIDFSR-LEMLVLDEADRMLDMG 163
Query: 258 FQNQV 262
F + V
Sbjct: 164 FIDDV 168
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF +T + + L G + H D++ R +TL + V V TD AA
Sbjct: 246 QAIVFTSTKRDADMLAEDLFALGHQAAALHGDMNQGARNRTLTRMRSGAIKVLVATDVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
RG+D+ +SHVI D A D++HR+GRT RAG GL
Sbjct: 306 RGLDVAGISHVINFDLPKFAEDYVHRIGRTGRAGSSGL 343
>gi|340721213|ref|XP_003399019.1| PREDICTED: ATP-dependent RNA helicase p62-like [Bombus terrestris]
Length = 533
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L + ++E E +T++F T V ++TK ++ G C H D S ER L
Sbjct: 346 LQDLLQEISNVSPEGGKTIIFVETKKKVESITKTIRRCGWPAVCIHGDKSQLERDFVLTE 405
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + V TD AARG+D+ +V +VI D+ TS+ D++HR+GRT R+ G + +T
Sbjct: 406 FRRNKDSILVATDVAARGLDVDDVKYVINFDYPTSSEDYIHRIGRTGRSNNSGTSYAFFT 465
Query: 529 ESN----RDLVDTIRRAAKLGQP 547
N + L++ ++ A ++ P
Sbjct: 466 PQNSRQAKGLINVLKEAKQVINP 488
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 41/221 (18%)
Query: 76 DTFFADDNVTWKSLGLS------------DRLIRALENSGFGRPSIVQAASVGPVLSGKD 123
DTF ++ +T K + D +++ + GF P+ +QA +SG++
Sbjct: 94 DTFRQENQITLKGEKIPNPIQHFEEGNFPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGQN 153
Query: 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183
+V A+TGSGKT Y++P I + + N P +LVL P L +Q+
Sbjct: 154 MVGIAQTGSGKTLGYILPAI----VHISSQQPLNRGDGPI-----ALVLAPTRELAQQIQ 204
Query: 184 RMANALSADNGEPLVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRR 235
++ VR+ + GG P G ++ ++TP L++ ++ R
Sbjct: 205 KVTYNFG------YVRSTCIFGGA--PKGNQARDLEHGVEICIATPGRLIDFLE----RG 252
Query: 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
+ +R Y+V DEAD +L F+ Q+ ++I R D + L
Sbjct: 253 ITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 293
>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
Length = 513
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 36/243 (14%)
Query: 65 AAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDV 124
A +V D G S+T ++K LG+ D L A EN G+ P+ +Q S+ L GKD+
Sbjct: 66 AKLVPDAAGPSETAPLK---SFKELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDL 122
Query: 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184
+ AETGSGKT ++ +P+++ AL D+ P + +L P L Q+
Sbjct: 123 IGLAETGSGKTAAFAIPILQ----ALWDN----------PTGLFACILAPTRELAFQISE 168
Query: 185 MANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEF 238
AL G VR+ + GG Q +G KP ++V+TP LL++++ + +
Sbjct: 169 QFEALGGGIG---VRSAVIVGGMDMMTQSVALGKKPHILVATPGRLLDHLENTKGFSL-- 223
Query: 239 VRGVKYVVFDEADMLL---CGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSL 295
R +KY+V DEAD LL G ++++++I R S S VEK + +SL
Sbjct: 224 -RNLKYLVMDEADRLLDMDFGPILDKILKVIPQTR-RTYLFSATMTSKVEK---LQRASL 278
Query: 296 TQP 298
+ P
Sbjct: 279 SSP 281
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
EF +T T++F TV + +L+ G + +S R L F+ +
Sbjct: 318 EFAGQT--TIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNIL 375
Query: 478 VCTDAAARGIDI---PN--VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
V TD AARG+D+ P+ + V+ D A + ++HRVGRTARAG+ G SL T+
Sbjct: 376 VATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYEV 435
Query: 533 DLVDTIRRAAKLGQPV 548
+L +R A LG+ +
Sbjct: 436 ELF--LRIEAALGKKI 449
>gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 441
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLIS 348
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ + + +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGAEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|154342919|ref|XP_001567405.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 604
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W+E +D + L+E +KE + R +VF + + L+ + I C H
Sbjct: 359 RWVE-DMDKR-GCLLEVLKEH-----QGERVLVFVEKKRDADYLERYLRQSRIPCSSIHG 411
Query: 457 DLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D ER + L F K GV V TD A+RG+DIPNV+ V+Q D ++ D++HR+GR
Sbjct: 412 DRVQREREEALDIF--KSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGR 469
Query: 514 TARAGQYGLVTSLYTESNRDLVDTI 538
T RAG+ G S + E NR++VD +
Sbjct: 470 TGRAGKRGTAISFFNEKNRNVVDDL 494
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ ++GLS L + + +P+ VQ + VL G D++ A+TGSGKT +YL+P I
Sbjct: 126 SFATMGLSPALAENVSRCRYQKPTPVQKYGIPCVLKGSDLMACAQTGSGKTAAYLIPAIN 185
Query: 145 -KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L L ++ +NS P+ +LVL P L Q+ + G +R V V
Sbjct: 186 FMLVNNLNRAKPTNSQSAPS-----ALVLSPTRELSIQIYEEGRKFTYRTG---IRCVVV 237
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG------VKYVVFDEAD 251
GG Q + + ++V+TP L + F RG V+++V DEAD
Sbjct: 238 YGGADPRHQIHELTRGCGLLVATPGRLSDM----------FTRGYTRYSDVRFLVLDEAD 287
Query: 252 MLLCGSFQNQV 262
+L F+ Q+
Sbjct: 288 RMLDMGFEPQI 298
>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 459
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
+RV K +Q +F +AT+P + AG Q D +S R++++
Sbjct: 169 LKRVAKLLPTDRQNLFFSATMPKEIEALAG----QFLNDPVKVSVAPQSTTAERVRQQAT 224
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + AL+ V E + R ++F T V + L+ AGI+ + H + S
Sbjct: 225 FVN-QAEKQALLHIVLET----EDIDRALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKS 279
Query: 460 LEERAKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R L F Q K + V TD AARGID+ VSHVI + ++HR+GRTARAG
Sbjct: 280 QGQRTTALQAFRQGKVKLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAG 339
Query: 519 QYGLVTSLYTESNRDLVDTIRRAAKL 544
G+ S + R + I RA ++
Sbjct: 340 AEGVAISFVADDERPYLKAIERATRV 365
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS+ +++AL + P+ +Q ++ +L G D+ A+TG+GKT ++ +P ++
Sbjct: 3 FTDLGLSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSLDY 62
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ +PTP R LVL P L Q+ + D G L +V
Sbjct: 63 FA----------RNPKPTPVRGCRMLVLSPTRELAAQIAQSFR----DYGRFLKLSVETV 108
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G G PI + D++V+TP LL+ ID +R ++ + V DEAD ++
Sbjct: 109 FG-GVPINRQIKALSQGVDIVVATPGRLLDLID----QRCFTIKDTEIFVLDEADQMMDM 163
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F + + R+ + D + L
Sbjct: 164 GFIHPLKRVAKLLPTDRQNL 183
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 26/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ R+ A+ + G+ PS +QAA++ P+++G+DVV A+TG+GKT ++ +P++
Sbjct: 17 TFDDLGIEPRVRAAISDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILS 76
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L T S K P +L+L P L QV SA P V+ + +
Sbjct: 77 RLDT---------SAKTPQ-----ALILAPTRELALQVSEAFGRYSAHM--PEVKVLPIY 120
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ + + VIV TP +++++D R+ + ++++V DEAD +L F
Sbjct: 121 GGQSYGVQLAGLRRGAQVIVGTPGRVIDHLD----RKTLDISNLEFLVLDEADEMLTMGF 176
Query: 259 QNQVIRLI 266
V R++
Sbjct: 177 AEDVERIL 184
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 14/209 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ SKQ +AT+P ++ A ++ D I+ + ++
Sbjct: 178 EDVERILAETPDSKQVALFSATMPSAIRRLA----QRYLNDPQEITVKSKTATAQNITQR 233
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+++V+ ++DAL + E EF A +VF T A + + L++ G+ + D
Sbjct: 234 YLQVSHQRKLDALTRFL-EVEEFDA----MIVFVRTKQATEELAEKLRSRGLSAVAINGD 288
Query: 458 LSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
L+ +R +T+ Q K G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 289 LAQAQRERTI--NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRT 346
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ G + R L+ I RA +
Sbjct: 347 GRAGRSGNALLFVSPRERHLLRAIERATR 375
>gi|440637394|gb|ELR07313.1| hypothetical protein GMDG_02493 [Geomyces destructans 20631-21]
Length = 582
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L++ +KE + R +VF V L++ GI H DLS E+R K+L
Sbjct: 404 LLQILKEHQSGSQKDDRIIVFCLYKKEATRVEGFLRSKGIRVAGIHGDLSQEQRTKSLDA 463
Query: 470 FQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F+ KG V V TD AARG+DIP V V+ F + D++HR+GRT RAG+ GL +L+
Sbjct: 464 FK-KGTTPVLVATDVAARGLDIPAVKLVLNCTFPLTVEDYVHRIGRTGRAGKEGLAITLF 522
Query: 528 TESNR 532
TE ++
Sbjct: 523 TEHDK 527
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +Q+A+ +L+G+DV+ AETGSGKT ++ VP I + ++P
Sbjct: 188 FKSPTPIQSAAWPFLLAGRDVIGVAETGSGKTMAFAVPCIRHIS------------EQPK 235
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDVIV 218
A ++V+ P L Q N L+A +G ++AV V GG Q + D++V
Sbjct: 236 FKGAKAVVVSPTRELAMQSYEQINKLAALSG---MQAVCVYGGVAKDEQRRALKTADIVV 292
Query: 219 STPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270
+TP L + I + + V YVV DEAD +L F+ ++ ++IN R
Sbjct: 293 ATPGRLNDLI----QEGSADLSKVSYVVLDEADRMLDKGFEEEIRKIINTAR 340
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 66 AVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVV 125
+V D ++D A++ T+K LG+ D L A E+ + P+ +QA S+ L G+DV+
Sbjct: 37 SVTLDVASTADAAEAEEPKTFKELGIVDSLCEACESLNYKTPTSIQARSIPVALQGRDVI 96
Query: 126 IAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185
AETGSGKT ++ +P+++ L ++P P LVL P L Q+ +
Sbjct: 97 GLAETGSGKTAAFALPILQALL------------EKPQP--FFGLVLAPTRELAAQIGQS 142
Query: 186 ANALSADNGEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFV 239
AL A +R + GG Q +G KP +IV+TP L+++++ + + +
Sbjct: 143 FEALGALIS---LRCAVIVGGLDMVPQAIALGKKPHIIVATPGRLVDHLE---KTKGFSL 196
Query: 240 RGVKYVVFDEADMLLCGSFQNQVIRLINMF 269
R +KY+V DEAD LL F + +++
Sbjct: 197 RSLKYLVMDEADRLLDMDFGPSIDKILKFI 226
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--- 475
EF ++ ++F TV V +L+T G H LS R L F KGG
Sbjct: 292 EFAGKS--IIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALNKF--KGGSRE 347
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
+ V TD AARG+DIP V V+ D + ++HRVGRTARAG+ G+ S+ T+ + ++
Sbjct: 348 ILVATDVAARGLDIPAVDVVLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIY 407
Query: 536 DTIRRA 541
I A
Sbjct: 408 QRIEAA 413
>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751661|ref|ZP_16188700.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753517|ref|ZP_16190508.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|421757241|ref|ZP_16194123.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|421759101|ref|ZP_16195935.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674420|ref|ZP_18111338.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086783|gb|EKM86896.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|409086998|gb|EKM87108.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091165|gb|EKM91168.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|409092696|gb|EKM92663.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|417434898|gb|EKT89830.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
Length = 441
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ + Q + +AT K A L + ++S + ++ ++ +K
Sbjct: 167 DLKKIHNLLPKKLQTLMFSATFSSEIKNLANEFLN----NPQFVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ +++ALI +K++ + +VF+ T + +++ L AGI H +
Sbjct: 223 YTLDKSNKINALISLIKDQ-----NLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ V V TD AARGIDI + VI D + A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSNDINVLVATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQEGLAISLVS 348
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ + G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVIFG 109
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNAVKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRLINMF 269
N + ++ N+
Sbjct: 166 NDLKKIHNLL 175
>gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus]
Length = 592
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+ +++ L++ + + + G S+T++F T V +T+ ++ G C H D + +ER
Sbjct: 387 ENKLNTLLQEIGQSQDPG---SKTIIFVETKRKVENITRNIRRYGWPAVCMHGDKTQQER 443
Query: 464 AKTLVNF-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
L F Q + + V TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 444 DDVLYQFKQGRANILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGT 503
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV ++ A ++ P
Sbjct: 504 SYAFFTPSNSRQAKDLVSVLQEANQVVSP 532
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D +++++ + G+ P+ +QA +SGK++V A+TGSGKT +Y++P I +
Sbjct: 164 DYVMKSISSMGYNEPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHI------ 217
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----Q 207
N + P A LVL P L +Q+ ++A VR V GG Q
Sbjct: 218 -NNQQPVRRGDGPVA--LVLAPTRELAQQIQQVATDFG---NAAYVRNTCVFGGAPKREQ 271
Query: 208 GWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
+ + +++++TP L++ ++ + ++ Y+V DEAD +L F+ Q+ ++I
Sbjct: 272 ARDLERGVEIVIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 327
Query: 267 NMFRFDEKQL 276
R D + L
Sbjct: 328 EQIRPDRQTL 337
>gi|432871166|ref|XP_004071865.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
[Oryzias latipes]
Length = 439
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ P+ +Q ++ L GKDV+ AETGSGKT ++ +P+++
Sbjct: 40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQ 99
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L +P R +LVL P L Q+ AL + G V+ +
Sbjct: 100 SLLA--------------SPQRLHTLVLTPTRELAFQISEQFEALGSSIG---VKCAVIV 142
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L F
Sbjct: 143 GGIDMMSQSLVLAKKPHIVIATPGRLIDHMENTKGFSL---RALKFLVMDEADRILNMDF 199
Query: 259 QNQVIRLINMF 269
+ +V +++ +
Sbjct: 200 ETEVDKILKVI 210
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 462 ERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ K V + TD A+RG+DIP+V VI D T + D++HRVGRTARAG+
Sbjct: 267 KRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRS 326
Query: 521 GLVTSLYTESNRDLVDTI 538
G + T+ + +L I
Sbjct: 327 GKSITFVTQYDVELFQRI 344
>gi|348532949|ref|XP_003453968.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Oreochromis niloticus]
Length = 336
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 129/294 (43%), Gaps = 64/294 (21%)
Query: 17 SPPKLLSKFNASSSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRGFAAAAAVVSDKNGSSD 76
SP + L +F A+S CLS+ P + R A K+G
Sbjct: 39 SPGRKLPRFPAASECLSDVEPDT-------------------RELVRAQNKKKKKSGG-- 77
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
++S+GLS + + + G+ P+ +Q +V +L GKDVV A TGSGKT
Sbjct: 78 ---------FQSMGLSYPVFKGVMKKGYKIPTPIQRKTVPVILDGKDVVAMARTGSGKTA 128
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
++L+P+ EKL + + T RA L+L P L Q ++ L G
Sbjct: 129 AFLIPMFEKL----------KAPQAQTGARA--LILTPTRELALQTMKFTKELGKFTG-- 174
Query: 197 LVRAVAVCGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVF 247
++ + GG Q + + PD+I+ TP L++ + ME + V YVVF
Sbjct: 175 -LKTALILGGDRMEDQFAALHENPDIIIGTPGRLMHVV-------MEMNLKLHSVAYVVF 226
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPL-EMDNSSLTQPDL 300
DEAD L F Q+ +I R + + + + + + K L E + LT+P L
Sbjct: 227 DEADRLFEMGFAEQLQEIIR--RLPDTRQTLLFSATLPKLLVEFARAGLTEPVL 278
>gi|344170690|emb|CCA83116.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [blood disease
bacterium R229]
Length = 614
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 37/250 (14%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGL +R++RAL + +P+ VQA ++ LSG D+++ ++TGSGKT ++++P I+++
Sbjct: 35 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94
Query: 149 --------ALGDSENSNSDK-EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
A G + + P+P + LVL P L QV A+ G L R
Sbjct: 95 QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQY----GRHLRR 150
Query: 200 AV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V ++ GG +P PD+I++TP LL++ID R + + +VFDEAD
Sbjct: 151 IVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFDEAD 206
Query: 252 MLLCGSFQNQVIRLI-------NMFRFD---EKQLSRMNESGVEKP--LEMDNSSLTQPD 299
+L F + + ++ M F ++++ ++ E + P +E+ + + Q +
Sbjct: 207 RMLDMGFADDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIATAKIDQSN 266
Query: 300 LQDEENLQDE 309
+++ + D+
Sbjct: 267 IEERLHFTDD 276
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 291 ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|154344931|ref|XP_001568407.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 860
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 8/151 (5%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + ++D L++ + +G E S ++F T V + L GI H D
Sbjct: 635 VPDNEKMDRLLQII-----YGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRR 689
Query: 460 LEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
++R L +F++K + V TD A+RG+DIP+V+HV+Q D D+ HR+GRT RAG
Sbjct: 690 QQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAG 749
Query: 519 QYGLVTSLYTESNRDL-VDTIRRAAKLGQPV 548
G+ T+ Y +NR L +D + ++ GQ +
Sbjct: 750 NKGIATAFYNRNNRRLALDLHKYFSEHGQEI 780
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
+E G+ +P+ VQ + L+G D++ A+TGSGKT ++L+P+++ + G S
Sbjct: 420 IERCGYKKPTPVQRYGIPVALAGSDLMACAQTGSGKTAAFLIPVVQYMLVH-GVSPARQR 478
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVI 217
P +LVL P L Q+ L+ + + V GG +P + D++
Sbjct: 479 KSYPI-----ALVLAPTRELAVQIFDEVRKLTFNTD---IFYDVVYGGTRYPQRFEQDIL 530
Query: 218 VSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI-----NMFRFD 272
V+ P L + + + + F +K+++ DEAD +L F+ Q+ L+ +M D
Sbjct: 531 VACPGRLRDMFNEE---YLSFS-AIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVD 586
Query: 273 EKQ 275
++Q
Sbjct: 587 DRQ 589
>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
IMCC9063]
Length = 558
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
+K++ I + + + + L+E VK + T+VF T + K L+ G E
Sbjct: 215 IKQEVINLRQEDKYNTLVEQVK------TKHGSTLVFVKTKHNAKKLAKNLEKEGFESDS 268
Query: 454 YHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H +L +R + + F+ K V V TD AARG+DIP++ HV+ D A DF+HR+G
Sbjct: 269 LHGNLRQNKRNQVIAKFRANKIHVLVATDIAARGLDIPHIEHVVNFDLPQQAEDFIHRMG 328
Query: 513 RTARAGQYGLVTSLYTESNR 532
RT RAG G S T S++
Sbjct: 329 RTGRAGASGTAWSFVTPSDK 348
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ L L+ L +L F P+ +Q S+ +L KD++ +A+TG+GKT ++ +P+IE
Sbjct: 4 FQELNLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIEM 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ T + +++L P L +QV + L + ++++V + G
Sbjct: 64 IATKKINR---------------AIILVPTRELAKQVNDVIEKLLFQ--QSVIKSVCLVG 106
Query: 206 GQGWPIG--------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
G+ P+ KP ++V TP + +++ +R+ + V ++ DE D +L
Sbjct: 107 GE--PMNKQLRRLKTKPQIVVGTPGRVNDHL----KRKSLLLNKVDLLILDEMDRMLDMG 160
Query: 258 FQNQVIRLINMF 269
F Q+ +I
Sbjct: 161 FSIQIDEIIKFL 172
>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
17244]
gi|169258472|gb|EDS72438.1| DEAD/DEAH box helicase [Anaerofustis stercorihominis DSM 17244]
Length = 510
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++F NT V +TK L+ G C H D+ ER++ + NF+ K + V TD AAR
Sbjct: 247 TIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAAR 306
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
GID+ +V +VI D ++ ++HR+GRTAR G+ G TS+ +NR V ++ K
Sbjct: 307 GIDVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTG--TSITMTNNRKQVTDLKMILK 362
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L ++ + R L+ GF P+ +Q ++ + SG DV+ ++TG+GKT ++ +P IE
Sbjct: 5 TFSELEINLDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIE 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ D E P A L++CP L +Q L+ P ++ V +
Sbjct: 65 KI------------DIEQEKPTAQVLIICPTRELAQQGYAEIKKLTK--YMPEIKVVDIY 110
Query: 205 GG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GG Q + K +++ TP + +++ +RR ++ +K VV DEAD +L F+
Sbjct: 111 GGVSMERQISKLKKAHIVIGTPGRIKDHL----KRRTLKLQNIKMVVLDEADEMLSMGFK 166
Query: 260 NQV 262
+
Sbjct: 167 EDI 169
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ VT+ LG+ +R++RAL G+ PS +QAA++ P+L+G DVV A+TG+GKT ++ V
Sbjct: 25 NEPVTFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAV 84
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ K+ D E P+A LVL P L QV + P +
Sbjct: 85 PVLSKI------------DGESRTPQA--LVLAPTRELALQVSEAFGKYAVHM--PNITV 128
Query: 201 VAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + GGQ + + +IV TP ++++++ + + ++++V DEAD +L
Sbjct: 129 LPIYGGQSYGVQLSGLRRGAQIIVGTPGRVIDHLE----KGTLDLSNLEFLVLDEADEML 184
Query: 255 CGSFQNQVIRLI 266
FQ V R++
Sbjct: 185 TMGFQEDVERIL 196
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D R+ + KQ +AT+P +K A K+ D IS + +
Sbjct: 189 QEDVERILADTPEFKQVALFSATMPPAIRKIA----KKYLHDPVEISVKAKTATGSNITQ 244
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++++V ++DAL RL E ++F T A + + L+ G +
Sbjct: 245 RYLQVAHQRKLDALT-----RLLEVEEFDGMIIFVRTKSATEELAEKLRARGHAAAAING 299
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D+ +R +T+ ++ K + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 300 DIVQAQRERTIGQLKDGKVDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTG 359
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G T R L+ I +A + QP+
Sbjct: 360 RAGRKGDALLFVTPRERHLLRAIEKATR--QPL 390
>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 419
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 28/211 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D R+ K ++Q +F +AT+P P+ ++ +LH NP R++
Sbjct: 166 DIERICKLVPFTRQTLFFSATMP---------------PEITRLTEAFLH--NPVRIEVA 208
Query: 398 WIEVTVDTQVDALIEA--------VKERLEFGAETSR-TMVFANTVDAVYAVTKILKTAG 448
T T AL+ RL GAE + ++F N V + + L G
Sbjct: 209 RASSTAATIRQALVATHGHAEKRETLRRLLRGAENFKNAIIFCNRKRDVAILHRSLDKHG 268
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D+ R +L F+ + VC+D AARG+DIP+VSHV D T + D+
Sbjct: 269 FSAGALHGDMDQPARMASLDAFKNGDVALLVCSDVAARGLDIPDVSHVFNFDVPTHSEDY 328
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+HR+GRT RAG+ G +L T +R +D I
Sbjct: 329 VHRIGRTGRAGRSGTAVTLVTGEDRKYLDQI 359
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 108/221 (48%), Gaps = 28/221 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGLS +++ A+E SG+ +P+ +Q ++ P L G+D++ A+TG+GKT ++++P++
Sbjct: 1 MTFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVRA 200
+L PR +L+L P L QV A+ N L+
Sbjct: 61 CRL---------EQGRARARMPR--TLILEPTRELAAQVEASFAKYGANHKLNVALLIGG 109
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
+A + + DV+++TP LL+ D R + ++ +V DEAD +L F
Sbjct: 110 MAFGDQEAKIMRGADVLIATPGRLLDFFD----RGKLLLTNIEILVIDEADRMLDMGFIP 165
Query: 261 QVIRLINMFRFDEK----------QLSRMNESGVEKPLEMD 291
+ R+ + F + +++R+ E+ + P+ ++
Sbjct: 166 DIERICKLVPFTRQTLFFSATMPPEITRLTEAFLHNPVRIE 206
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 26/209 (12%)
Query: 66 AVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVV 125
AVV KNG DT F+ N T L LS L++A G+ P+ +QAA V L+G+D+
Sbjct: 134 AVVKGKNGEKDTTFSAANFT--ELNLSRPLVKACGALGYASPTPIQAAVVPLALTGRDIC 191
Query: 126 IAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVR 184
A TGSGKT ++++P +E++ + P P A LVL P L QV +
Sbjct: 192 GRAVTGSGKTAAFMLPCLERML-----------HRGPKPVAATHVLVLVPTRELAVQVHQ 240
Query: 185 MANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEF 238
M L+ VRA V GG + +P+V+V+TP L++++ R
Sbjct: 241 MTERLAQFTS---VRAALVVGGLSANVQATSLRSRPEVVVATPGRLIDHV---RNTHSVG 294
Query: 239 VRGVKYVVFDEADMLLCGSFQNQVIRLIN 267
+ + +V DEAD LL F ++ ++
Sbjct: 295 LEDLATLVLDEADRLLEMGFLEEIREIVR 323
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
T R ++F+ T + + I+ G++ H DL+ +R L F+ + V TD
Sbjct: 396 TKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEATHMVATDV 455
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI-RRA 541
AARG+DI V V+ D + +LHRVGRTARAG+ G + ES+R L+ + +R
Sbjct: 456 AARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLIKAVSKRG 515
Query: 542 AKL 544
+KL
Sbjct: 516 SKL 518
>gi|401426793|ref|XP_003877880.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 622
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W+E VD + L+E +KE + R +VF + + L+ + I C H
Sbjct: 375 RWVE-DVDKR-GCLLEVLKEH-----QGERVLVFVEKKRDADYLERYLRQSRIPCSSIHG 427
Query: 457 DLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D ER + L F K GV V TD A+RG+DIPNV+ V+Q D ++ D++HR+GR
Sbjct: 428 DRVQREREEALDIF--KSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGR 485
Query: 514 TARAGQYGLVTSLYTESNRDLVDTI 538
T RAG+ G S + + NR++VD +
Sbjct: 486 TGRAGKRGTALSFFNDKNRNIVDDL 510
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ ++ L+ L + + +P+ VQ + VL+G D++ A+TGSGKT +YL+P I
Sbjct: 142 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 201
Query: 145 -KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L L S+ +NS P+ +LVL P L Q+ + G +R V V
Sbjct: 202 FMLVNNLNRSKPTNSQSAPS-----ALVLSPTRELSIQIYEEGRKFTYRTG---IRCVVV 253
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG------VKYVVFDEAD 251
GG Q + + ++V+TP L + F RG V+++V DEAD
Sbjct: 254 YGGADPRHQIHELTRGCGLLVATPGRLSD----------MFTRGYTRYSDVRFLVLDEAD 303
Query: 252 MLLCGSFQNQV 262
+L F+ Q+
Sbjct: 304 RMLDMGFEPQI 314
>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
Length = 549
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463
+T+++ L++ + E GA + ++F T V ++T+ ++ G C H D S +ER
Sbjct: 345 ETKLNNLLQEIGNNGEPGA---KIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQER 401
Query: 464 AKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
L F+ K + + TD AARG+D+ + +VI D+ S+ D++HR+GRT R+ G
Sbjct: 402 DFVLREFRNGKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGT 461
Query: 523 VTSLYTESN----RDLVDTIRRAAKLGQP 547
+ +T SN +DLV ++ A + P
Sbjct: 462 SYAFFTPSNFRQAKDLVSVLKEANQAINP 490
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 32/197 (16%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
D + ++ G+ P+ +QA +SGKD+V A+TGSGKT +Y++P I +
Sbjct: 120 FPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIVHI---- 175
Query: 151 GDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 207
+ +P+ R +LVL P L +Q+ ++A+ + + VR + GG
Sbjct: 176 --------NNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSS---YVRNTCIFGGA 224
Query: 208 GWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
P G ++ ++TP L++ ++ + ++ Y+V DEAD +L F+
Sbjct: 225 --PKGPQARDLERGVEICIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFE 278
Query: 260 NQVIRLINMFRFDEKQL 276
Q+ ++I R D + L
Sbjct: 279 PQIRKIIEQIRPDRQTL 295
>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 586
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 34/204 (16%)
Query: 69 SDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
+D S+ A T+ LGLSD++++AL++ G+ PS +QAA++ +LSG+DV+ A
Sbjct: 3 TDDTASTPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVA 62
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN----VVLCEQVVR 184
+TG+GKT ++ +P++ SN D P+A LVL P + +CE R
Sbjct: 63 QTGTGKTAAFALPIL------------SNLDVSQKTPQA--LVLAPTRELALQVCEAFER 108
Query: 185 MANALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEF 238
A+ + V + V GGQG+ + V+V TP +++++D + ++
Sbjct: 109 YASGMRG------VHVLPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLD---KGTLDL 159
Query: 239 VRGVKYVVFDEADMLLCGSFQNQV 262
+ +K++V DEAD +L F V
Sbjct: 160 SQ-LKFLVLDEADEMLKMGFAEDV 182
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 14/213 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + +SKQ +AT+P ++ +G L+ D + I+ + ++
Sbjct: 180 EDVETILADTPKSKQIALFSATMPAQIRRISGKYLQ----DPEEITVKNKTTTSANTTQR 235
Query: 398 WIEVTVDTQVDALIEAVK-ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++ V+ +VDAL ++ E E +VF T + + + L+ G
Sbjct: 236 YLMVSYPQKVDALTRILETENFEG------MIVFVRTKNETETLAEKLRARGYAAAAISG 289
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ +R +T+ + K + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 290 DVAQAQRERTVEQLKNGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTG 349
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G S T R L+ I +A + QP+
Sbjct: 350 RAGRSGAAISFVTPRERRLLTAIEKATR--QPL 380
>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
Length = 1526
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
T T++F T A+++ L H D + ER + L F+ + + V T
Sbjct: 446 TGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAV 505
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTI 538
AARG+DIPNV+HVI D T D++HR+GRT RAG G+ T+ + N RDL+D +
Sbjct: 506 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLL 565
Query: 539 RRAAK 543
+ A +
Sbjct: 566 KEAHQ 570
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D LI + + + P+ VQ S+ V++G+D++ A+TGSGKT +L P++
Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246
Query: 145 KLCTALGDSENSNSDKE--------PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
+ + ++ + PT SL+L P L Q+ A + +
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPT-----SLILAPTRELVSQIFDEARKFAYRS--- 298
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
VR V GG IG D++V+TP L++ I+ R R+ V +KY++ D
Sbjct: 299 WVRPCVVYGGAD--IGSQLRQIERGCDLLVATPGRLVDLIE---RGRISLV-NIKYLILD 352
Query: 249 EADMLLCGSFQNQVIRLI 266
EAD +L F+ Q+ R++
Sbjct: 353 EADRMLDMGFEPQIRRIV 370
>gi|452990332|emb|CCQ98554.1| putative ATP-dependent RNA helicase [Clostridium ultunense Esp]
Length = 535
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 12/209 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + ++ +Q + +AT+P + A +K D + N P +++ +
Sbjct: 174 DIESILRSVPADRQTLLFSATMPAEIRSLANRYMK----DPQTVRVNREEVAAPLIEQVY 229
Query: 399 IEVTVDTQVDALIEAV-KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+V ++D+L + E +E G ++F T V +T+ L+ G H D
Sbjct: 230 YKVLEKNKLDSLCRVLDSEEVELG------IIFCRTKKGVDELTESLQARGYLADGLHGD 283
Query: 458 LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
LS +R K + +F+ + + + TD AARGID+ NVSHVI D ++HR+GRT R
Sbjct: 284 LSQAQRDKVMGDFRTNRIELLIATDVAARGIDVSNVSHVINYDIPQDPESYVHRIGRTGR 343
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
AG+ G+ +L T + I K G
Sbjct: 344 AGKRGIAITLVTPREMKQLKAIEHMIKTG 372
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 100/200 (50%), Gaps = 32/200 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ + +++A++ GF PS +Q+A + +L G DV+ A+TG+GKT ++ +P++E
Sbjct: 14 SFQEFKIDQAILKAIQEMGFEEPSPIQSACIPKILEGFDVIGQAQTGTGKTAAFGIPIVE 73
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ ++ P +LVL P L ++++ L + ++ + +
Sbjct: 74 KVTSS---------------PEVQALVLTPTRELA---IQISGELRKISKFKRIKTLPIY 115
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ IG V++ TP ++++++ ++ +++ VR VV DEAD +L
Sbjct: 116 GGQS--IGHQIRALKQGVQVVIGTPGRIIDHLN-RKTLKLDHVR---IVVLDEADEMLDM 169
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F + + ++ D + L
Sbjct: 170 GFIDDIESILRSVPADRQTL 189
>gi|336315118|ref|ZP_08570030.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880529|gb|EGM78416.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 438
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 102/183 (55%), Gaps = 23/183 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L RL+R++++ GF +P+ +Q +V ++GKD++++++TGSGKT +YL+P++++
Sbjct: 3 FHDLALDPRLVRSIQHLGFAQPTPIQQEAVPAAMTGKDLMVSSQTGSGKTLAYLLPMMQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + S+ A +L+L P L QV A+ PL A+ + G
Sbjct: 63 LLRSRPLSKQD----------ARALILVPTRELAHQVYAKLRLFVANT--PLTSAL-IVG 109
Query: 206 GQGW----PIGK--PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G+ + I K P +IV+TP ++++ + + F++G++ ++ DEAD +L F
Sbjct: 110 GENFNEQEKILKRQPTIIVATPGRFIDHL----QHKTFFIQGLEMLILDEADRMLDLGFM 165
Query: 260 NQV 262
Q+
Sbjct: 166 PQL 168
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
EA+ L + S+ ++F T + + KI + G L+ +R + F
Sbjct: 234 EALLAYLLKQEQISQLIIFTATREDTDRLAKICDSLGYPAVGLSGKLTQGQRNAVMQGFS 293
Query: 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
K V V TD A+RG+D+ VSHV+ D A +++HR+GRT RAG G+ SL
Sbjct: 294 ANKHQVLVTTDVASRGLDLLQVSHVVNFDLPKHAEEYVHRIGRTGRAGAKGIAISL 349
>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CFBP2957]
Length = 603
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 25/218 (11%)
Query: 62 AAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG 121
A A +SD A + +LGL +R++RAL + P+ VQA ++ LSG
Sbjct: 8 GGAIAHTESDTPNSDALNATAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPACLSG 67
Query: 122 KDVVIAAETGSGKTHSYLVPLIEKLCTA-------LGDSENSNSDKEPTP-PRAPS-LVL 172
+D+++ ++TGSGKT ++++P I+++ + + + P P P PS LVL
Sbjct: 68 RDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRMDGAPQRVKGRRPRPAPAKPSLLVL 127
Query: 173 CPNVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAAL 224
P L QV +A G L R V ++ GG +P PD+I++TP L
Sbjct: 128 TPTRELALQVT----TATAQYGRHLRRIVCASILGGMPYPKQLDMLARMPDIIIATPGRL 183
Query: 225 LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
L++ID R + + +VFDEAD +L F + +
Sbjct: 184 LDHIDSGR----IDLSALDMLVFDEADRMLDMGFADDI 217
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V T
Sbjct: 291 ASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLTALRRGHLRILVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|357125045|ref|XP_003564206.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like
[Brachypodium distachyon]
Length = 637
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
LI A K G + S T+VF T A+ L T G H D + +ER L +
Sbjct: 422 LIHAQKANTVPGKQ-SLTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRS 480
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V TD AARG+DIP+V+HVI D D++HR+GRT RAG+ G+ T+ +
Sbjct: 481 FKSGATPILVATDVAARGLDIPDVAHVINFDLPNDIDDYVHRIGRTGRAGKSGVATAFFN 540
Query: 529 ESNRDL 534
E N L
Sbjct: 541 EGNMSL 546
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + RP+ VQ ++ V+ G+D++ A+TGSGKT ++ P+I
Sbjct: 177 TFAEIDLGDALNENIRRCKYVRPTPVQRHAIPIVIGGRDLMACAQTGSGKTAAFCFPIIS 236
Query: 145 KLCTALGDSENSNSDKEPTPPRAP------SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ + + P PR +L+L P L Q+ A + G V
Sbjct: 237 GIMKS----------RPPQRPRGSRTAYPLALILSPTRELSVQIHEEAKKFAYQTG---V 283
Query: 199 RAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
RAV GG PI + +++V+TP L++ ++ R R+ ++ V Y+ DEA
Sbjct: 284 RAVVAYGGA--PIHQQLRELERGVEILVATPGRLMDLLE---RARVS-LQMVNYLALDEA 337
Query: 251 DMLLCGSFQNQVIRLINMF 269
D +L F+ Q+ +++
Sbjct: 338 DRMLDMGFEPQIRKIVEQM 356
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 30/235 (12%)
Query: 70 DKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAE 129
D+N +S F T+ L L LI+A +N + +P+ +Q+ S+ P L G D++ A+
Sbjct: 74 DENSTSYETFE----TFSELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQ 129
Query: 130 TGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189
TGSGKT ++ +P++ L D++P + +L P L +Q+ ++L
Sbjct: 130 TGSGKTAAFAIPILNSLW----------HDQQP----YYACILAPTRELAQQIKETFDSL 175
Query: 190 SADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
+ G VR+V + GG + KP VI++TP L+++++ + + R +K
Sbjct: 176 GSLMG---VRSVCIVGGMNMMDQARDLMRKPHVIIATPGRLMDHLENTKGFSL---RKLK 229
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
Y+V DEAD LL F + R++ + + + + K ++ +SLT P
Sbjct: 230 YLVMDEADRLLDMEFGPVLDRILKILPTQGRTTYLFSATMTSKIDKLQRASLTNP 284
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++F T ++ + H DL+ +R L F+ + + V TD AAR
Sbjct: 327 TIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKTILVATDVAAR 386
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
G+DIP+V VI D + ++HRVGRTARAG+ G SL ++ + +L+
Sbjct: 387 GLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 436
>gi|334882020|emb|CCB82967.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
Length = 447
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKE--------RLEFGAETSRTMVFANTVDAVYA 439
+ +NP ++E +E + +D + + K RL E ++FANT + V
Sbjct: 200 YMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLLTIGEPYLVLIFANTKERVQE 259
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
+T L+ G+ H D+ ER + + + Q+ K V TD AARGIDI VSHVI
Sbjct: 260 LTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAARGIDIEGVSHVIND 319
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
D F+HRVGRT R G G +LY+ D V +
Sbjct: 320 DIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEDKVSAV 359
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++ L L++AL F +P+ VQ + + +G+ V+ + TGSGKTH++L+P+I
Sbjct: 4 SFENFKLQPFLMQALTEINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L N+D+ +++ P+ L Q+ A L + + + + V
Sbjct: 64 QL----------NADER----YVQAVITTPSRELAYQIQAAAKQLIQHSPKAIHIGLYVG 109
Query: 205 GG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + +P +I+ TP +L D R + ++ R + VV DEADM L F
Sbjct: 110 GTDKQEQIEKLHRHQPQLIIGTPGRIL---DLMRSQSLDVHRATQLVV-DEADMTLDLGF 165
Query: 259 QNQV 262
N V
Sbjct: 166 LNVV 169
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR----- 393
D + K ++Q +F +AT+P P+ ++ +LH NP
Sbjct: 166 DIEEICKKLPFTRQTLFFSATMP---------------PEIQRLTDTFLH--NPERIEVA 208
Query: 394 --------LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK 445
+K+ ++ T D + D L ++E ++F N V + + L
Sbjct: 209 RASSTSANIKQVLLKTTRDGKRDVLQRMIEED-----NVKNAIIFCNRKRDVSVLERALS 263
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSA 504
+G+ H DL R +TL F+ + V +D AARG+DIP+VSHV D + A
Sbjct: 264 KSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVASDVAARGLDIPDVSHVFNYDVPSHA 323
Query: 505 VDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
D++HR+GRT RAG+ G +L T + + I + +G P+
Sbjct: 324 EDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAIEKL--IGNPI 365
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 18/196 (9%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGL+ +++A+ +G+ P+ +QA ++ VL+G+DV+ A+TG+GKT S+ +P+I
Sbjct: 1 MTFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMI 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+KL S PR SL+L P L QV N + +
Sbjct: 61 DKL---------SRGRARARMPR--SLILEPTRELAAQVAENFETYGKYNKLSMALLIGG 109
Query: 204 C--GGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
G Q + + DV+++TP LL++ + R + GV+ +V DEAD +L F
Sbjct: 110 VSFGDQEKKLDRGVDVLIATPGRLLDHCN----RGKVLLTGVQILVIDEADRMLDMGFIP 165
Query: 261 QVIRLINMFRFDEKQL 276
+ + F + L
Sbjct: 166 DIEEICKKLPFTRQTL 181
>gi|323305025|gb|EGA58779.1| Dbp3p [Saccharomyces cerevisiae FostersB]
gi|323337602|gb|EGA78847.1| Dbp3p [Saccharomyces cerevisiae Vin13]
Length = 349
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVL----KQMFPDADWISGN-----YLHFHNPR 393
+R+ +Q + AT P ++ A + K + D ++ N + +PR
Sbjct: 106 IRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPR 165
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
KE+ L+E +K+ + + ++FA V + LK G
Sbjct: 166 GKER-----------KLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAA 214
Query: 454 YHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DLS ++R + L F+ K + + TD AARG+DIPNV VI F + D++HR+G
Sbjct: 215 IHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIG 274
Query: 513 RTARAGQYGLVTSLYTESNRDL 534
RT RAGQ G +L+TE + L
Sbjct: 275 RTGRAGQTGTAHTLFTEQEKHL 296
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 23/198 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+++VT+ S GL ++RAL SG+ +P+ +QAA++ V +G+DV+ AA+TG+GKT +
Sbjct: 9 ANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFS 68
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPL 197
+P+I L L D+ S S P R P +L+L P L +QV +
Sbjct: 69 LPIIHNL---LPDANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAKYTA--- 117
Query: 198 VRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +V DEAD
Sbjct: 118 LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRMLVLDEAD 173
Query: 252 MLLCGSFQNQVIRLINMF 269
+L F + R+IN+
Sbjct: 174 RMLDMGFLPDLQRIINLL 191
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 183 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATAEN--VRQVI 238
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + + AL+ +K+R E G + +VF+N+ + + L+ GI H D
Sbjct: 239 YTVPDNHKQAALVHLLKQRAEQGL-PRQCIVFSNSKIGCSRLARALEREGINANAIHGDK 297
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 298 TQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 357
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 358 GASGDALSLFAPGDERLLADIEKLIKRNLP 387
>gi|406602489|emb|CCH45957.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 644
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P + + A LK D ++S + + + +K + V D + L
Sbjct: 354 RQTLMFSATFPTDIQMLARDFLK----DYIFLSVGKVGSTSENITQKVLYVEDDEKRSVL 409
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ + E T++F T A++ L H D + ER + L F
Sbjct: 410 LDILS-----ADENGLTLIFVETKRMADALSDFLINTNFPATSIHGDRTQNERERALEYF 464
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K + V T AARG+DIPNV+HVI D T D++HR+GRT RAG G+ T+
Sbjct: 465 RSGKAPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATAFLNR 524
Query: 530 SN----RDLVDTIRRA 541
N +DL+D + A
Sbjct: 525 GNKNVVKDLIDILSEA 540
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI-EKLCTA 149
L + L+ ++ + F +P+ VQ SV V +G+D++ A+TGSGKT +L P++ E
Sbjct: 168 LEELLLENIKKARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPILSESFLNG 227
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--- 206
+ + +LVL P L Q+ A + VR V GG
Sbjct: 228 PSEVPEPTTQFSRRKAYPTALVLAPTRELVSQIYDEAKKFTY---RSWVRPTVVYGGSDI 284
Query: 207 --QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
Q I + D++V+TP L + ++ R + +R +KY+V DEAD +L F+ Q+
Sbjct: 285 RSQIQDIQRGCDLLVATPGRLNDLLE----RGVISLRNIKYLVLDEADRMLDMGFEPQIR 340
Query: 264 RLI 266
++
Sbjct: 341 HIV 343
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 34/197 (17%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D T+ LG+ DR++ A+ + G+ PS +QAA++ P+LSG DVV A+TG+GKT ++ +
Sbjct: 17 NDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADVVGLAQTGTGKTAAFAI 76
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV----RMANALSADNGEP 196
P++ L T S K P SLVL P L QV R A + P
Sbjct: 77 PILMGLDT---------SGKLPQ-----SLVLAPTRELAIQVAEAFGRYATHI------P 116
Query: 197 LVRAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
+ + + GGQ + + V+V TP ++++++ + ++ + +KY+V DEA
Sbjct: 117 GLHVLPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLE---KGTLDLSQ-LKYLVLDEA 172
Query: 251 DMLLCGSFQNQVIRLIN 267
D +L FQ V R++
Sbjct: 173 DEMLKMGFQEDVERILK 189
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D R+ K+ KQ +AT+P +K + KQ D I+ + +
Sbjct: 181 QEDVERILKDTPAGKQVALFSATMPAAIRK----ISKQYLNDPVEITVKSKTSTATNITQ 236
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W++V+ ++DAL + E F A ++F T A + + L+ G +
Sbjct: 237 RWVQVSHQRKLDALTR-ILEVESFEA----MIIFVRTKQATEELAEKLRARGFSAAAING 291
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ +R +T+ + + + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 292 DIAQNQRERTIGHLKSGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 351
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ G R L+ +I RA +
Sbjct: 352 RAGRSGEALLFVAPRERHLLKSIERATR 379
>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
Length = 449
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ D L A E+ + RP+ +QA ++ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 59 TFKELGIVDSLCEACESLNYKRPTAIQAKAIPVALQGRDVIGLAETGSGKTAAFALPILQ 118
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P LVL P L Q+ + AL A +R +
Sbjct: 119 ALL------------EKPQP--LFGLVLAPTRELAAQIGQSFEALGALIS---LRCAVIV 161
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +G KP +IV+TP L+++++ + + R +KY+V DEAD LL F
Sbjct: 162 GGLDMVPQAIALGKKPHIIVATPGRLVDHLEKTKGFSL---RSLKYLVMDEADRLLDMDF 218
Query: 259 QNQVIRLINMF 269
+ +++
Sbjct: 219 GPSIDKILKFI 229
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--- 475
EF ++ ++F TV + +L+T G H LS R L F KGG
Sbjct: 295 EFAGKS--IIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKF--KGGSRE 350
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
+ V TD AARG+DIP V V+ D + ++HRVGRTARAG+ G+ ++ T+ + ++
Sbjct: 351 ILVATDVAARGLDIPAVDVVLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIY 410
Query: 536 DTIRRA 541
I A
Sbjct: 411 QRIEAA 416
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|225563337|gb|EEH11616.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus G186AR]
Length = 624
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++L L RL++AL F +P+++QA ++ L GKDV+ A+TGSGKT +YL+P+++
Sbjct: 25 SFETLKLDPRLLQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-----LVR 199
+ L N+ P +L+L P L EQV R A + SA +G+ L +
Sbjct: 85 SI---LQQKMNN-----PAHKSISALILVPTRELAEQVHRTAISFSAFSGKDIRSANLTQ 136
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + PD++VSTPA + N++ + R + ++V DEAD++L ++
Sbjct: 137 KVSDAVQRALLADLPDIVVSTPARAVANVNSS---ALSLER-LTHLVIDEADLVLSYGYE 192
Query: 260 NQVIRL 265
+ L
Sbjct: 193 EDMQNL 198
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID NV+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 395 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQ 443
>gi|156407059|ref|XP_001641362.1| predicted protein [Nematostella vectensis]
gi|156228500|gb|EDO49299.1| predicted protein [Nematostella vectensis]
Length = 507
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+ ++++ S+GL DR+++A+ + +P+ +Q ++ L GKDV+ A+TGSGKT +Y +
Sbjct: 6 EQSLSFDSMGLDDRIVKAISKLNWSKPTPIQEKAITLALEGKDVLARAKTGSGKTAAYAI 65
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++++ + + KE +L+L P L +Q R A LS+ VR
Sbjct: 66 PVVQRIL------QEKQTCKESY---IRALILVPTKELAQQAARNAKELSSCCARE-VRV 115
Query: 201 VAVCGG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V G + + KPD++V TP+ +L +I K M+ ++ +V DEAD++
Sbjct: 116 ADVAQGNLPSTKPLLMDKPDIVVGTPSGILGHIQAK---NMDLKDSLQMLVIDEADLVFS 172
Query: 256 GSFQNQVIRLIN 267
+++ + L++
Sbjct: 173 YGYEDDLKVLLS 184
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
ARGID V +VI DF ++ ++HRVGRTAR G S T S+ ++
Sbjct: 349 ARGIDFQGVENVINFDFPSTVEAYIHRVGRTARGDSSGTALSFVTHSDNTVI 400
>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
gi|91206540|sp|Q4IF76.1|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
Length = 555
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + +Q + +AT P + A L+ D+I N N R+ +
Sbjct: 303 RKIIGQIRPDRQTLMWSATWPKEVRALASDFLQ------DFIQVNIGSMELAANHRITQI 356
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VT + D +I+ +++ +E + ++ ++F T +T+ L+ G H D
Sbjct: 357 VEVVTEMEKRDRMIKHMEKVME--NKENKILIFVGTKRVADEITRFLRQDGWPALSIHGD 414
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT R
Sbjct: 415 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGR 474
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AG G +L+T N RDLV+ ++ A + P
Sbjct: 475 AGAMGTAITLFTTDNQKQARDLVNVLQEAKQQIDP 509
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 135 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 194
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L Q+ + +R V
Sbjct: 195 HI----------NAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSS---RIRNTCV 241
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 242 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 295
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 296 MGFEPQIRKIIGQIRPDRQTL 316
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|392949268|ref|ZP_10314854.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|392435524|gb|EIW13462.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 447
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKE--------RLEFGAETSRTMVFANTVDAVYA 439
+ +NP ++E +E + +D + + K RL E ++FANT + V
Sbjct: 200 YMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLLTIGEPYLVLIFANTKERVQE 259
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
+T L+ G+ H D+ ER + + + Q+ K V TD AARGIDI VSHVI
Sbjct: 260 LTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAARGIDIEGVSHVIND 319
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
D F+HRVGRT R G G +LY+ D V +
Sbjct: 320 DIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEDKVSAV 359
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L L++AL F +P+ VQ + + +G+ V+ + TGSGKTH++L+P+I
Sbjct: 4 SFEDFKLQPFLMQALTEINFRKPTAVQEMLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L N+D+ +++ P+ L Q+ A L + + + + V
Sbjct: 64 QL----------NADER----YVQAVITTPSRELAYQIQAAAKQLIQHSPKAIHIGLYVG 109
Query: 205 GG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + +P +I+ TP +L D R + ++ R + VV DEADM L F
Sbjct: 110 GTDKQEQIEKLHRHQPQLIIGTPGRIL---DLMRSQSLDVHRATQLVV-DEADMTLDLGF 165
Query: 259 QNQV 262
N V
Sbjct: 166 LNVV 169
>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 411
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L L++A+E G+ RP++VQA ++ L GKDV+ +A TG+GKT ++L+P+I+
Sbjct: 4 FSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQH 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L K+P P R LVL P L QV A L+ +++ + G
Sbjct: 64 LL--------DFPRKKPGPARV--LVLTPTRELAIQVADQARTLAKHT---MLKVFTITG 110
Query: 206 GQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G + +GK D++V+TP L+ I+ ++ F R ++ ++ DEAD +L F
Sbjct: 111 GISYDEHAELLGKTQDIVVATPGRLMEYIEAEK-----FDCRAIECLILDEADRMLDMGF 165
Query: 259 QNQVIRLINMFRFDEKQL 276
V RL + R+ + L
Sbjct: 166 GKVVERLNHECRWRSQSL 183
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481
+ RT++F T + + + L+T GI C +++ R + F++ V + TD
Sbjct: 244 QAERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINVLIATD 303
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARGID+P+VSHVI D +A +LHR+GRTARAG+ G SL ++ +++ + R
Sbjct: 304 VAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIERVSRY 363
Query: 542 AK 543
K
Sbjct: 364 MK 365
>gi|322710764|gb|EFZ02338.1| ATP dependent RNA helicase, putative [Metarhizium anisopliae ARSEF
23]
Length = 794
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 19/211 (9%)
Query: 61 FAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS 120
F A AA+ ++ + D D W +L LS L+ A+ GF +P+ +Q S+ +++
Sbjct: 194 FLALAAMADEEAETDDLDMGD----WVALNLSPNLVSAIAKLGFSKPTAIQEKSIPEIIA 249
Query: 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR----AP-SLVLCPN 175
G DV+ A+TGSGKT ++ +P++EK + E+ D P + P +++L P
Sbjct: 250 GGDVIGKAQTGSGKTLAFGIPIVEKWLDMHEEQEDQAGDDGDQPNKKNREGPMAVILSPT 309
Query: 176 VVLCEQVVRMANALSADNGEPLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNID 229
L +Q+ A+ +G P + V G Q + K D+++ TP L +D
Sbjct: 310 RELAKQIGDHIKAVC--DGLPASPYICVVTGGLSIQKQQRQLEKADIVIGTPGRLWEVLD 367
Query: 230 PKRRRRMEFVRGVKYVVFDEADMLL-CGSFQ 259
+ + +F R +K++V DEAD L G F+
Sbjct: 368 GDAKLQQQFTR-IKFLVVDEADRLFKVGQFK 397
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
RT+VF N++ AV +T +L+ H + + R ++L F + + V TD AA
Sbjct: 517 RTLVFTNSISAVRRITPLLQHLNQNALPLHSQMIQKARLRSLEKFTAARNTILVATDVAA 576
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RG+DI V VI +A ++HR GRTARA + G+ S+ S +++ T R A+K+
Sbjct: 577 RGLDIKEVDQVIHYHVPRAADTYVHRSGRTARADRSGV--SIILCSPDEVLPTRRLASKV 634
>gi|336125600|ref|YP_004577556.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343317|gb|AEH34599.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 421
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 107/201 (53%), Gaps = 31/201 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS L+ AL++ GF +P+ VQ+ ++ VL+GKDV+ A+TG+GKT ++ +P++++
Sbjct: 8 FQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFGLPILQR 67
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
++ +++E +LVL P L +QV ++LSA ++ V G
Sbjct: 68 FL-------DNQAEREANSKVVRALVLVPTRELAQQVF---DSLSAYAQGTTLKIVTAYG 117
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGV-----KYVVFDEADMLL 254
G + G D++++TP L++++ FVR + + +V DEAD +L
Sbjct: 118 GTSMQVQTRNLRGGADILIATPGRLIDHL---------FVRNIILTQTEVLVLDEADRML 168
Query: 255 CGSFQNQVIRLINMFRFDEKQ 275
F + R++ DE+Q
Sbjct: 169 DMGFLPDIQRILKRMN-DERQ 188
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + K LK GI+ + D S R K L +F+ K + TD AA
Sbjct: 253 QVLVFTKTKQGSDELAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAA 312
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RGIDI + V+ D A D++HR+GRT RAG G SL + L++ I
Sbjct: 313 RGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGLTGFAVSLMSRDEEYLLEAI 366
>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 445
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K + Q + +AT ++ + +S + ++ ++ +K
Sbjct: 167 DLKKIHKLLPKKLQTLMFSATF----SPEITSLANEFLDSPQSVSADVVNTTVKKITQKI 222
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ T+++ALI +K++ + + +VF+ T +++ L AGI H +
Sbjct: 223 YTLDKSTKINALISLIKDQ-----DLHQVLVFSRTKHGANKISEKLNNAGITSSAIHGNK 277
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R K L +F+ K V V TD AARGIDI + VI D A D++HR+GRT RA
Sbjct: 278 SQTARTKALADFKSKDINVLVATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRA 337
Query: 518 GQYGLVTSLYT 528
GQ GL SL +
Sbjct: 338 GQDGLAISLVS 348
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGL+ + ALE G+ +P+ +QA ++ VL G DV+ +A+TG+GKT + +P+I++
Sbjct: 3 FSDLGLNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L D + ++ R +L+L P L Q+ +A+ +R+ V G
Sbjct: 63 LL----DQPKAQAN------RIKTLILTPTRELAAQIQEQIQIYAANTH---IRSAVVFG 109
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + K +++++TP LL D + ++F + V DEAD +L F
Sbjct: 110 GVSINPQMMKLRKGVEILIATPGRLL---DLYSQNALKF-DSLNTFVLDEADRMLDMGFI 165
Query: 260 NQVIRL 265
N + ++
Sbjct: 166 NDLKKI 171
>gi|422910505|ref|ZP_16945144.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424660172|ref|ZP_18097419.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341633423|gb|EGS58231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408050933|gb|EKG86058.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 397
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL S+ K+ R +L+L P L QV D G ++++AV
Sbjct: 61 EKL------SQGQTQRKK----RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDVYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S +
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSND 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 415
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 19/196 (9%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGLS L++A GF P+ VQ+A++ VL G DV+ +A+TGSGKT ++ +PL+++
Sbjct: 3 FSALGLSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLLQR 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L +D + P +L+L P L QV + +L +P+ AV G
Sbjct: 63 L----------QADAQNAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGG 112
Query: 206 GQGWPI-----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
P G DV+V+TP LL+ ++ R + V+++V DEAD LL F
Sbjct: 113 VSINPQMMGLRGGADVVVATPGRLLDLVEHNALR----LGSVEHLVLDEADRLLDLGFAE 168
Query: 261 QVIRLINMFRFDEKQL 276
++ R++ + + L
Sbjct: 169 ELQRILQLLPVRRQNL 184
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIEC 451
P + ++ V + L V+E + SR MVF T A V + L AGI
Sbjct: 218 PAIAQRAFAVDAQRRTQLLRHLVQEH-----QWSRVMVFVATQYAAEHVAEKLYKAGIFA 272
Query: 452 YCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510
+H LS R + L F++ + V V TD AARGIDI + V+ D SA D++HR
Sbjct: 273 TPFHGGLSQGARTQVLQEFKDDRWQVVVTTDLAARGIDIAQLPAVVNYDLPRSADDYVHR 332
Query: 511 VGRTARAGQYGLVTSLY---TESNRDLVD 536
+GRT RAG+ G+ S TE++ L++
Sbjct: 333 IGRTGRAGESGVAVSFVSAATEAHFRLIE 361
>gi|444709332|gb|ELW50353.1| putative ATP-dependent RNA helicase DDX28 [Tupaia chinensis]
Length = 559
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 33/199 (16%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAA 128
+N SS FAD LGL R++RAL+ + RP+ VQ++++ P+L G+ ++ AA
Sbjct: 139 RNLSSKDSFAD-------LGLETRVLRALQEAAPEVVRPTTVQSSTIPPLLRGRHILCAA 191
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP-PRAPSLVLCPNVVLCEQVVRMAN 187
ETGSGKT YL+PL ++L + N P P PR LVL P+ L EQV +A
Sbjct: 192 ETGSGKTLGYLLPLFQRLV------DLPNLGTRPIPAPRG--LVLVPSRELAEQVRAVAQ 243
Query: 188 ALSADNGEPLVRAVAVCGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFV 239
L + G ++ + GG G + DV+V+TP AL + + ++ +
Sbjct: 244 HLGSSLG---LQVRELGGGHGMSKVRLQLSKQPPSDVLVATPGALWKAL----KSQLISL 296
Query: 240 RGVKYVVFDEADMLLCGSF 258
+ ++V DEAD LL SF
Sbjct: 297 EQLSFLVLDEADTLLDESF 315
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 12/206 (5%)
Query: 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVD 404
++ Q + V AT P + V P++ I+ + LH P +K+ ++ +
Sbjct: 338 SFNPKAQLVLVGATFPEGVNQLLSKVAS---PNSLTTITSSRLHCIMPHVKQTFMRLKGA 394
Query: 405 TQVDALIEAVK--ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462
+V L++ +K ++ + + +VF N+ V + IL I+ +
Sbjct: 395 DKVAELVQILKHHDKADKNRPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASV 454
Query: 463 RAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
RA +FQ KG + +CTD A+RG+D +V VI DF + D++HR GR R G
Sbjct: 455 RAGIFQSFQ-KGSRDILLCTDIASRGLDSTHVELVINYDFPLTLQDYIHRAGRVGRVGSE 513
Query: 521 --GLVTSLYTES-NRDLVDTIRRAAK 543
G V S T + +LV I AA+
Sbjct: 514 VPGTVISFVTHPWDVNLVQKIELAAR 539
>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
Length = 941
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 43/238 (18%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGL+ L++A+ GF P+ +Q ++ VL +DVV A TGSGKT ++++P+IEK
Sbjct: 88 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 147
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L S+S K + RA L+L P+ L Q +++ L +++V + G
Sbjct: 148 L--------KSHSAKFGS--RA--LILSPSRELALQTLKVVKELGRGTD---LKSVLLVG 192
Query: 206 GQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEF---VRGVKYVVFDEADMLLCG 256
G + PD+I++TP L+ ++E + ++YVVFDEAD L
Sbjct: 193 GDSLEEQFEYMASNPDIIIATPGRFLH-------LKVEMSLDLSSIRYVVFDEADRLFEM 245
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
F Q+ +++ K L +G+++P + +D S PDLQ+
Sbjct: 246 GFATQLTEILHGLPSSRQTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQN 303
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 415 KERLEFGAETSR-------TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
++R EF + + + T++F T V +T IL+T+G + L R +
Sbjct: 348 RKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTSILRTSGFAVSYAYGSLDQTARKIEV 407
Query: 468 VNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
NF+ + V TD AARGIDIP +S+VI DF + F+HRVGRTARAG+ G SL
Sbjct: 408 QNFRAGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSL 467
Query: 527 YTESN 531
ES+
Sbjct: 468 IRESD 472
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 110/199 (55%), Gaps = 23/199 (11%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLS+ L+RA+++ G+ PS +Q ++ VL+G+DV+ AA+TG+GKT + +PL+
Sbjct: 1 MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L G+ SN+ + +LVL P L QV A +++ +++V V
Sbjct: 61 HRLSR--GNPARSNAVR--------ALVLTPTRELAAQV---AESVTTYGKYLPLKSVVV 107
Query: 204 CGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + K DV+V+TP LL+ + + + F R ++ ++ DEAD +L
Sbjct: 108 FGGVNINPQMLAMRKGADVLVATPGRLLDLVS---QNALHF-RQLEVLILDEADRMLDMG 163
Query: 258 FQNQVIRLINMFRFDEKQL 276
F + ++INM D + L
Sbjct: 164 FIRDIRKIINMLPKDRQTL 182
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + L+TAGI+ H + S R + L F++ V V TD AA
Sbjct: 245 QVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVATDIAA 304
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RGIDI + V+ + A D++HR+GRT RAG G SL + + L+ + + K
Sbjct: 305 RGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVDVEKLIK 363
>gi|421178877|ref|ZP_15636479.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|404547823|gb|EKA56806.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
Length = 449
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|336370677|gb|EGN99017.1| hypothetical protein SERLA73DRAFT_137127 [Serpula lacrymans var.
lacrymans S7.3]
Length = 332
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q + +AT P + +K A LK M + S HN ++ +E
Sbjct: 111 RKIVSQIRPDRQTLMFSATWPKDVQKLANDFLKDMI-QVNIGSMELTANHN---IQQIVE 166
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V D + A + +K + AE ++ ++F T +TK L+ G H D
Sbjct: 167 VCSDFEKRA--KLIKHLDQISAENAKVLIFVGTKRVADDITKYLRQDGWPALAIHGDKEQ 224
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L F+ + + + TD A+RG+D+ +V +VI DF + D++HR+GRT RAG
Sbjct: 225 RERDWVLGEFKAGRSPILIATDVASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGM 284
Query: 520 YGLVTSLYTESN----RDLVDTIRRA 541
G + +T N R+L+ +R A
Sbjct: 285 KGTSYTYFTTDNAKSARELIGILREA 310
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP--------DVIVST 220
+LVL P L Q+ + + + +R A+ GG P G +V+++T
Sbjct: 18 ALVLAPTRELAVQIQQECTKFGSSS---RIRNTAIYGGA--PKGPQIRDLQRGVEVVIAT 72
Query: 221 PAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
P L++ ++ ++ +R + Y+V DEAD +L F+ Q+ ++++ R D + L
Sbjct: 73 PGRLIDMLETQKTN----LRRITYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTL 124
>gi|408400620|gb|EKJ79698.1| hypothetical protein FPSE_00152 [Fusarium pseudograminearum CS3096]
Length = 558
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + +Q + +AT P + A L+ D+I N N R+ +
Sbjct: 306 RKIIGQIRPDRQTLMWSATWPKEVRALASDFLQ------DFIQVNIGSMELAANHRITQV 359
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
VT + D +I+ +++ +E + ++ ++F T +T+ L+ G H D
Sbjct: 360 VEVVTEMEKRDRMIKHMEKVME--NKENKILIFVGTKRVADEITRFLRQDGWPALSIHGD 417
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
ER L F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT R
Sbjct: 418 KQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGR 477
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AG G +L+T N RDLV+ ++ A + P
Sbjct: 478 AGAMGTAITLFTTDNQKQARDLVNVLQEAKQQIDP 512
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 138 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIV 197
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L Q+ + +R V
Sbjct: 198 HI----------NAQPLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSS---RIRNTCV 244
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 245 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 298
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 299 MGFEPQIRKIIGQIRPDRQTL 319
>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|386068049|ref|YP_005983353.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|348036608|dbj|BAK91968.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
Length = 449
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
Length = 744
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY--LHFHNPRLKEKW 398
R++ + +Q + +AT P ++ A L AD+I N L+ +
Sbjct: 287 RKIMGQIRPDRQVLMWSATWPKEVRQLAEEFL------ADYIQINIGSLNLSANHNILQI 340
Query: 399 IEVTVDTQVDALIEAVKERLEFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V D + D + +K E AE ++T++F T V +T+I+ G H D
Sbjct: 341 VDVCEDYEKDQKL--MKLLTEISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGD 398
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S +ER L F+ + G+ V TD AARG+D+ +V VI D+ +++ D++HR+GRT R
Sbjct: 399 KSQQERDYVLSAFRNGRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGR 458
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G +L+T SN DL++ +R A ++ P
Sbjct: 459 SNNTGTAYTLFTHSNANKANDLINVLREANQVINP 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
GL ++ L+ GF +P+ +QA + LSG+D+V A+TGSGKT +Y+VP + +
Sbjct: 124 GLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSLVHI--- 180
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
++ S + P A L+L P L +Q+ ++A + V A C G
Sbjct: 181 ----QHQESIRRGDGPIA--LILAPTRELAQQIQQVATDFGSR-----VSANNTCVFGGA 229
Query: 210 PIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
P G +++++TP L++ ++ R + ++ Y+V DEAD +L F+ Q
Sbjct: 230 PKGPQIRDLERGAEIVIATPGRLIDFLE----RGITNLKRCTYLVLDEADRMLDMGFEPQ 285
Query: 262 VIRLINMFRFDEKQL 276
+ +++ R D + L
Sbjct: 286 IRKIMGQIRPDRQVL 300
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 26/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ +R+ +AL++ G+ PS +QAA++ P+++G DVV A+TG+GKT ++ +P++
Sbjct: 8 TFDGLGIDERVRQALDDVGYETPSPIQAATIPPLMAGNDVVGLAQTGTGKTAAFAIPILS 67
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L D P+A LVL P L QV S+ P VR + +
Sbjct: 68 RL------------DSSARKPQA--LVLAPTRELALQVSEAFGKYSSHM--PDVRVLPIY 111
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ + + VIV TP +++++D + + ++++V DEAD +L F
Sbjct: 112 GGQSYTVQLSGLRRGAQVIVGTPGRVIDHLD----KGTLDISQLEFLVLDEADEMLTMGF 167
Query: 259 QNQVIRLIN 267
V R+++
Sbjct: 168 AEDVERILS 176
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + SKQ +AT+P K G + K+ + ++ + +K
Sbjct: 169 EDVERILSDTPDSKQVALFSATMP----KAIGRLAKKYLKNPTEVAVESKTATAQNITQK 224
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+++V+ ++DAL ++ ET M VF T A + + L+ G +
Sbjct: 225 YLQVSHQRKLDALTRVLE------VETFDGMIVFVRTKQATEELAERLRARGFSAVAING 278
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
DL+ +R +T+ + + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 279 DLAQAQRERTINQLKNSTIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 338
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G + R L+ I + + QP+
Sbjct: 339 RAGRSGTALLFVSPRERHLLRAIEKMTR--QPL 369
>gi|339639221|emb|CCC18456.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
Length = 447
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKE--------RLEFGAETSRTMVFANTVDAVYA 439
+ +NP ++E +E + +D + + K RL E ++FANT + V
Sbjct: 200 YMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYRLLTIGEPYLVLIFANTKERVQE 259
Query: 440 VTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQA 498
+T L+ G+ H D+ ER + + + Q+ K V TD AARGIDI VSHVI
Sbjct: 260 LTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQFVVATDLAARGIDIEGVSHVIND 319
Query: 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
D F+HRVGRT R G G +LY+ D V +
Sbjct: 320 DIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGEEDKVSAV 359
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L L++AL F +P+ VQ + + +G+ V+ + TGSGKTH++L+P+I
Sbjct: 4 SFEDFKLQPFLMQALTEINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L N+D+ +++ P+ L Q+ A L + + + + V
Sbjct: 64 QL----------NADER----YVQAVITTPSRELAYQIQAAAKQLIQHSPKAIHIGLYVG 109
Query: 205 GG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + +P +I+ TP +L D R + ++ R + VV DEADM L F
Sbjct: 110 GTDKQEQIEKLHRHQPQLIIGTPGRIL---DLMRSQSLDVHRATQLVV-DEADMTLDLGF 165
Query: 259 QNQV 262
N V
Sbjct: 166 LNVV 169
>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 559
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R + + + +F +AT+P + AG++L+ D ++ + R++++ I
Sbjct: 206 RAIVRRLPHKRHSLFFSATMPHAIAELAGSMLR----DPVRVAVTPVAKTADRVEQRVIL 261
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V + L E + + R +VF+ T V ++L AGI H + S
Sbjct: 262 VDKANKGQLLAEVLSTE-----DIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQ 316
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R + L F+E K + TD AARGID+ VSHVI D ++HR+GRTARAG+
Sbjct: 317 NQRDRVLAAFREGKIRTLIATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGR 376
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G+ S R + +I + K+ P
Sbjct: 377 EGIAISFCDHEERAFLRSIEKLIKMQLP 404
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 34/190 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ +LGL++ ++RAL + P+ +QA ++ +L+G+D++ A+TG+GKT ++ +P+++
Sbjct: 38 SFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILD 97
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR----A 200
+L P P +LVL P L Q+V +N E R +
Sbjct: 98 RLV---------RHPHRPEPKSVRALVLSPTRELSGQIV--------ENFEKFGRHANIS 140
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V++ G G P+G+ DV+V+TP L++ ++ + V+ +V DEAD
Sbjct: 141 VSLAIG-GVPMGRQIRALSRGVDVLVATPGRLIDLVE----NHAVKLDQVEVLVLDEADQ 195
Query: 253 LLCGSFQNQV 262
+L F + +
Sbjct: 196 MLDMGFVHAI 205
>gi|300692069|ref|YP_003753064.1| bifunctional DEAD/DEAH box helicase/ATP dependent RNA helicase
[Ralstonia solanacearum PSI07]
gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum PSI07]
Length = 614
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 25/191 (13%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGL +R++RAL + +P+ VQA ++ LSG D+++ ++TGSGKT ++++P I+++
Sbjct: 35 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 94
Query: 149 --------ALGDSENSNSDK-EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
A G + + P+P + LVL P L QV A+ G L R
Sbjct: 95 QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQY----GRHLRR 150
Query: 200 AV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V ++ GG +P PD+I++TP LL++ID R + + +VFDEAD
Sbjct: 151 IVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFDEAD 206
Query: 252 MLLCGSFQNQV 262
+L F + +
Sbjct: 207 RMLDMGFADDI 217
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 291 ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 350
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 351 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 401
>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|375130065|ref|YP_004992164.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
Length = 414
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481
++ R +VF T + + V +L++A I C ++ + R + F++ + + TD
Sbjct: 245 QSERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFRDGSVNILLATD 304
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARGID+P+VSHVI D SA +LHR+GRTARAG+ G+ SL ++ ++D + R
Sbjct: 305 VAARGIDVPDVSHVINFDLPRSADVYLHRIGRTARAGKKGIAISLVEAHDQPMMDRVARY 364
Query: 542 AK 543
K
Sbjct: 365 LK 366
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L L+ A+E GF RP+ VQA ++ L G+DV+ +A TG+GKT ++++P ++
Sbjct: 4 TFADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L K+ P R L+L P L Q+ A L+ + +
Sbjct: 64 FL--------QDFPRKKAGPARI--LILTPTRELAMQITEQARELAKYTK---LNIFTIT 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG + D++V+TP LL I+ +R F R +++++ DEAD +L
Sbjct: 111 GGVQYQEHADILATTQDIVVATPGRLLEYIEAER-----FDCRAIEWLILDEADRMLDMG 165
Query: 258 FQNQVIRL 265
F V RL
Sbjct: 166 FGPVVDRL 173
>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
Length = 614
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVC 479
G E S T+ F T ++ L + G H D S ER L+ F+ + V
Sbjct: 397 GKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDALMTFRTGVTPILVA 456
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLV 535
T AARG+DIPNV HVI D + +++HR+GRT R G GL TS + + N RDLV
Sbjct: 457 TAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNLGLATSFFNDKNRNVVRDLV 516
Query: 536 DTI 538
D +
Sbjct: 517 DIL 519
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL-- 146
L L + + ++ S + +P+ VQ ++ + +D++ A+TGSGKT ++L+P++ +
Sbjct: 143 LDLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILSLIYE 202
Query: 147 -----CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
G + ++ P +LVL P L Q+ + + VR
Sbjct: 203 NGPQGLPQHGRQYGGSGSRKRYP---LALVLAPTRELASQIYDESKKFAY---RSHVRPC 256
Query: 202 AVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
V GG IG ++V TP L++ ++ + R +++ +KY++ DEAD +
Sbjct: 257 VVYGGAD--IGGQMRDLERGCHLLVGTPGRLVDMME-RGRIGLDY---IKYLILDEADRM 310
Query: 254 LCGSFQNQVIRLI 266
L F+ Q+ R++
Sbjct: 311 LDMGFEPQIRRIV 323
>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase [Halorhodospira halophila SL1]
gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
SL1]
Length = 403
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 106/193 (54%), Gaps = 28/193 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++++GLS L+RA+ G+ +P+ +QA ++ VL G DV+ +A+TG+GKT ++ +PL+
Sbjct: 1 MTFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
++L S++ + R +LVL P L QV + A G L +R+
Sbjct: 61 QRL---------SDTAPQQGQRRIRALVLTPTRELAAQV----SESVATYGRHLPLRSTE 107
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ G G P+GK D++V+TP L++++D R +R V ++ DEAD +L
Sbjct: 108 IYG--GAPMGKQTAALRRGVDIVVATPGRLIDHLD----RGNVDLRHVDMLILDEADRML 161
Query: 255 CGSFQNQVIRLIN 267
F+ + R++
Sbjct: 162 DMGFKPAIERILK 174
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + + L+ GI H D S +R + L F+ K V TD AA
Sbjct: 246 QVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKSVRALVATDVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RG+DI + HV+ D + D++HR+GRT R G G SL R I+R K
Sbjct: 306 RGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSGEAWSLVGGEERGQFKAIQRLVK 364
>gi|367030829|ref|XP_003664698.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
gi|347011968|gb|AEO59453.1| hypothetical protein MYCTH_2307795 [Myceliophthora thermophila ATCC
42464]
Length = 580
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
SG+ N R+++K V + + L+E ++E + + R +VF V +
Sbjct: 425 SGSTELQANTRIEQKVEVVDPNAKEQRLLELLREAQKGSGKNDRILVFCLYKKEAVRVEQ 484
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFA 501
L+ GI H DL ++R ++L F+ K V V TD AARG+DIP V VI F
Sbjct: 485 FLERKGIRVASIHGDLRQDQRTRSLEAFKSGKTTVLVATDVAARGLDIPEVKLVINVTFP 544
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+ D++HR+GRT RAG+ G +L+T+ ++
Sbjct: 545 LTIEDYVHRIGRTGRAGRSGKAITLFTQHDK 575
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QAAS LSG+DV+ AETGSGKT ++ +P +E AL K
Sbjct: 214 FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFSLPCVE----ALASRPRPKHSKGGK 269
Query: 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC--GGQGWPIGK-------- 213
A ++V+ P L Q ++L++ LV AVC GG +
Sbjct: 270 TACARAVVVSPTRELAMQTHAAMSSLAS-----LVGLSAVCLYGGASKDEQRALLRKNSG 324
Query: 214 PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDE 273
D+IV+TP L + + + V + V DEAD +L F+ + ++ E
Sbjct: 325 ADIIVATPGRLKDFLS----EGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCPPRE 380
Query: 274 KQLSRM 279
K+ + M
Sbjct: 381 KRQTLM 386
>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
Length = 449
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASVRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLMVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 40/246 (16%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ +T+ +G++ L ++ E G+ P+ +Q ++ L G+DV+ AETGSGKT ++ +P
Sbjct: 24 EGLTFSDIGITSVLCQSCEEMGWTTPTDIQREAIPVALEGRDVIGLAETGSGKTGAFSLP 83
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+++ L TP R +LVL P L Q+ AL G V+
Sbjct: 84 ILQSLLD--------------TPTRLFALVLTPTRELAFQISEQFEALGGRIG---VKCA 126
Query: 202 AVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V GG Q + KP V+++TP L+++++ + + R VKY+V DEAD +L
Sbjct: 127 VVVGGVDMMTQALALAKKPHVVIATPGRLVDHLENTKGFSL---RSVKYLVMDEADRILN 183
Query: 256 GSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEEN 305
F +V +++ + + K++ ++ + + P++++ S+ Q +
Sbjct: 184 MDFGEEVDKILKVLSRERRTYLYSATMTKKVQKLQRASLHNPIKVEVST----KYQTVDK 239
Query: 306 LQDEYI 311
LQ YI
Sbjct: 240 LQQSYI 245
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF +T +L+ G+ + ++ +R L F+ K + + TD A+RG
Sbjct: 269 MVFCSTCANTQRTAVMLRNLGLPAIPLYGKMAQMKRLGALSKFKSKSRSILIATDVASRG 328
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 329 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRAITFVTQYDVELYQRI 380
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 40/255 (15%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++ L
Sbjct: 1 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL-- 58
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--- 206
TP R +LVL P L Q+ AL + G V++ + GG
Sbjct: 59 ------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVIVGGIDS 103
Query: 207 --QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
Q + KP +I++TP L+++++ + + R +KY+V DEAD +L F+ +V
Sbjct: 104 MSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDFETEVD 160
Query: 264 RLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313
+++ + D K++ ++ + ++ P++ SS Q E LQ Y+
Sbjct: 161 KILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQYYLFI 216
Query: 314 EGNFEGDSDVEGLTE 328
F+ V L E
Sbjct: 217 PSKFKDTYLVYILNE 231
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 238 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 297
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 298 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 357
Query: 547 PV 548
PV
Sbjct: 358 PV 359
>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 455
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 48 LRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRP 107
L L ++K R V D++ D+ D+ T++ LG+ L RA + G+ P
Sbjct: 9 LELEKYKSRLMSSINRKMTVTIDQDDEKDS----DSPTFEDLGVCVELCRACKELGWKTP 64
Query: 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167
+ +Q ++ LSGKD++ AETGSGKT ++ +P+++KL P R
Sbjct: 65 TKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEK--------------PQRL 110
Query: 168 PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG-KPDVIVSTPAALLN 226
SL+L P L Q+ +L L+ Q + KP +IV +P + +
Sbjct: 111 FSLILAPTRELSLQIKEQLISLEIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPGRIAD 170
Query: 227 NIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
++ + +E +KY+V DEAD LL F + + ++I
Sbjct: 171 HLQNTKGFSLE---TIKYLVLDEADKLLSADFDDSLNKII 207
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF---VCT 480
TS MVF NT VT L+ + C H LS +R +L +F K G+F V T
Sbjct: 278 TSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSF--KTGLFNILVVT 335
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D +RGIDIP V VI D ++ D++HRVGRTARAG+ G+ +L T+ + + I
Sbjct: 336 DVGSRGIDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIEAFQRIEY 395
Query: 541 A 541
A
Sbjct: 396 A 396
>gi|402590562|gb|EJW84492.1| DEAD box ATP-dependent RNA helicase [Wuchereria bancrofti]
Length = 462
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 117/223 (52%), Gaps = 25/223 (11%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
+D++T++ LG++D L A + + +P+ VQ A++ +D++ AETGSGKT ++ +
Sbjct: 21 NDDITFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAI 80
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++ L TP + +LVL P L Q+ AL A G ++ A
Sbjct: 81 PILQALL--------------ETPQKLFALVLTPTRELAFQIGEQFEALGASIG--ILIA 124
Query: 201 VAVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
V V G Q + K P VIV+TP L+++++ + + R +KY+V DEAD +L
Sbjct: 125 VIVGGIDTVTQSLALAKRPHVIVATPGRLVDHLENTKGFNL---RALKYLVMDEADRILN 181
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ ++ +++ + E++ + + +K +++ +SL P
Sbjct: 182 MDFEVELEKILKVIP-KERRTYLYSATMTKKVAKLERASLVDP 223
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VF 477
E +T+ +VF +T + +L+ G H +S +R +L F+ K V
Sbjct: 260 EMAGQTA--IVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVL 317
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
VCTD A+RG+DIP+V V+ D T + D++HRVGRTARAG+ G+ + T+ + ++
Sbjct: 318 VCTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQK 377
Query: 538 IRR 540
I R
Sbjct: 378 IER 380
>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
Length = 623
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNPRLKEK 397
R++ + + +Q + +AT P ++ A LK Q+ A +S N HN +
Sbjct: 279 RKIIEQIRPDRQTLMYSATWPKEVRQLAEEFLKEYTQINIGALQLSAN----HN---ILQ 331
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V + + D + + E + G + ++T++F T V +T+ ++ G C H D
Sbjct: 332 IVDVVQEHEKDHKLSRLLEEI-MGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGD 390
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER L F+ K + V TD A+RG+D+ ++ VI D+ SA D++HR+GRTAR
Sbjct: 391 KSQPERDWVLNQFRSGKAPILVATDVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTAR 450
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ + G + +T SN +DLV ++ A + P
Sbjct: 451 SDRTGTAYTFFTPSNLKQTKDLVSVLQEAQQQVNP 485
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 32/197 (16%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
D ++ + N+ F +P+ +QA L G+D+V A+TGSGKT +Y++P I +
Sbjct: 117 FPDYVMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLPAIVHI---- 172
Query: 151 GDSENSNSDKEPTPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 207
+ +P R LVL P L +QV + A+ + R C
Sbjct: 173 --------NHQPYLERGDGPICLVLTPTRELAQQVQQEASKFGRSS-----RIKNTCVFG 219
Query: 208 GWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G P G +V ++TP L++ ++ + +R Y+V DEAD +L F+
Sbjct: 220 GSPKGPQIRDLERGVEVCIATPGRLIDFLEAGKTN----MRRCTYLVLDEADRMLDMGFE 275
Query: 260 NQVIRLINMFRFDEKQL 276
Q+ ++I R D + L
Sbjct: 276 PQIRKIIEQIRPDRQTL 292
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 27/221 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VT+KSLGL D L+ ALE G+ P+ +Q S+ L G+D++ A TGSGKT ++ +P++
Sbjct: 17 VTFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPIL 76
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+KL P + VL P L Q+ + +L + G R +
Sbjct: 77 QKLWE--------------DPKGLFACVLAPTRELAYQISQQFESLGSAMG---ARCAVI 119
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG P +P ++V+TP L+ +++ + + R +K++V DEAD LL
Sbjct: 120 VGGMDMPAQAIALAKRPHIVVATPGRLMQHLEETKGFSL---RSIKFLVLDEADRLLDLD 176
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F + +++ + E+ + + K ++ +SL+ P
Sbjct: 177 FGASIDKILKVIP-KERTTYLFSATMTTKVAKLQRASLSNP 216
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAARG 486
++F TV ++ IL+T G H LS +R L F+ G V V TD A+RG
Sbjct: 260 IMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLVATDVASRG 319
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G +L T+ + +LV I +
Sbjct: 320 LDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQ 373
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASIRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 26/220 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L LI+A +N + +P+ +Q+ S+ P L G D++ A+TGSGKT ++ +P++
Sbjct: 81 TFSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILN 140
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L D+EP + +L P L +Q+ ++L + G VR+ +
Sbjct: 141 RLW----------HDQEP----YYACILAPTRELAQQIKEAFDSLGSLMG---VRSTCIV 183
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + KP +I++TP L+++++ + + R +K++V DEAD LL F
Sbjct: 184 GGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSL---RKLKFLVMDEADRLLDMEF 240
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ R++ + E+ + + K ++ +SLT P
Sbjct: 241 GPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNP 280
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H DL+ +R L F+ K + V TD AARG+DIP+V V+ D + ++HRVGR
Sbjct: 351 HGDLNQNQRMGALDLFKAGKRAILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGR 410
Query: 514 TARAGQYGLVTSLYTESNRDLV 535
TARAG+ G SL ++ + +L+
Sbjct: 411 TARAGRSGKSISLVSQYDLELI 432
>gi|383769279|ref|YP_005448342.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
gi|381357400|dbj|BAL74230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
Length = 526
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R++++
Sbjct: 183 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTVERIQQRI 238
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ +R +VF T V K L+ AGI H +
Sbjct: 239 IQVDFSAKPAFLAQLLKQE-----PVNRALVFTRTKHGADKVVKALEKAGIPASAIHGNK 293
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ ++HVI D ++HR+GRTAR
Sbjct: 294 SQNHRERTLAQFRS-GDIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTAR 352
Query: 517 AGQYGLVTSL 526
AG G SL
Sbjct: 353 AGAEGTAISL 362
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ GL++ L RAL + P+ +QA ++ L+G+DVV A+TG+GKT S+ +P++
Sbjct: 17 SFQDFGLAEPLARALAEEKYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L EN +P P LVL P L Q++ NA +R +
Sbjct: 77 RLL------ENR---IKPQPKTCRVLVLSPTRELSGQILDSFNAYGRH-----IRLSSTL 122
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
G P+G+ DV+V+TP LL+ + + + V+++V DEAD +L
Sbjct: 123 AIGGVPMGRQVRSLMQGVDVLVATPGRLLDLVQSNGLK----LSSVEFLVLDEADRMLDM 178
Query: 257 SFQNQVIRLI 266
F N + +++
Sbjct: 179 GFINDIRKIV 188
>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
gi|416877267|ref|ZP_11919721.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
gi|334839751|gb|EGM18425.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 152504]
Length = 449
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASIRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGGDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|149236141|ref|XP_001523948.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013497|sp|A5E572.1|DBP9_LODEL RecName: Full=ATP-dependent RNA helicase DBP9
gi|146452324|gb|EDK46580.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 606
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 111/217 (51%), Gaps = 40/217 (18%)
Query: 66 AVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DV 124
++ S K ++ + DD TW SL L RL++A++ GF P+++Q++++ L K D+
Sbjct: 2 SLKSTKTTAASETYLDDETTWDSLNLDPRLLQAIDKLGFENPTLIQSSAIPLALEEKRDI 61
Query: 125 VIAAETGSGKTHSYLVPLIEKLC---TALGDSENSNSDKEPTPPRAPSLVLCPNVVLC-- 179
+ A TGSGKT +Y +P+I+ + + LG S+VL P L
Sbjct: 62 IAKASTGSGKTAAYAIPIIQNIMVQGSQLG---------------TQSVVLVPTRELSNQ 106
Query: 180 -----EQVVRMAN------ALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNI 228
EQ+++ +N LS++ + +++++ I KP++I+STP+ L+ +
Sbjct: 107 VYQFMEQLIKFSNNKIGILNLSSNYSDQVLKSLL--------INKPEIIISTPSKLIQTL 158
Query: 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
+ + + + VK + DE D++L +++ + +L
Sbjct: 159 EAHEGKDIIDLSTVKNLTIDEVDLILSFGYKDDLQKL 195
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RG+D NV+ V+ D T++ ++HRVGRTARAG+ G+ S
Sbjct: 397 GVSRGVDFRNVACVLNFDLPTTSKSYVHRVGRTARAGKSGMALSF 441
>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
Length = 386
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
+ V K R +Q + +AT+ +KT V K + DA++I + NP + +
Sbjct: 169 KDVIKTTMRDRQLMVFSATI---NEKTLN-VAKGLMKDAEFIKAKSENAINPNITHMYF- 223
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ Q D + V +L + +VF N D +T LK I+ H S
Sbjct: 224 --ISDQRDKI--EVLRKLVASINPEKAIVFINKSDETEIITAKLKYHKIKAEGIHGSSSK 279
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
++R K L F+ K + V +D AARG+DI NVSH+ D + ++LHRVGRT+R G+
Sbjct: 280 KDRQKALEGFRSGKLQLLVASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRTSRTGE 339
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKL 544
G S+ T+ L+ R K+
Sbjct: 340 TGTAISIVTDKELSLIKKYERDFKI 364
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LGL+ LI L+ G +P+ +Q ++ L KDV+ + TGSGKT +YL+P+ +
Sbjct: 4 SFDKLGLNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPIFQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ T+ + + +++L P L Q+ + LS N + V + +
Sbjct: 64 KIDTSKREMQ--------------AIILAPTHELAMQINKEIQLLSG-NSKVSVTSTPII 108
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
G KP VIV + +L I K+ +K +V DE D LL S
Sbjct: 109 GNANVKRQIEKLKEKPHVIVGSSGRILELIKKKKIS----AHTIKTIVVDEGDKLLDHS 163
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 21/213 (9%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
K SDT T+ GL+ +++A++ SG+ P+ +QA ++ VL+G+DV+ AA+T
Sbjct: 24 KATMSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQT 83
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANA 188
G+GKT S+ +P+I++L ++ +P R P +L+L P L +QV AN
Sbjct: 84 GTGKTASFSLPIIQRLL--------PHASTSASPARHPVRALILTPTRELADQVA--ANV 133
Query: 189 LSADNGEPLVRAVAVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
S L AV G P +++++TP LL+++ +++ + V+
Sbjct: 134 QSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHV----QQKTANLGQVQ 189
Query: 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
+V DEAD +L F + R++N+ + + L
Sbjct: 190 ILVLDEADRMLDMGFLPDLQRILNLLPKERQTL 222
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + +Q + +AT KK A L+ P ++ + N + +
Sbjct: 207 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRN--PQTIEVARSNSTATN--VTQIV 262
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV + A+++ ++ER + +VF N+ + + L+ G+ H D
Sbjct: 263 YEVAEGDKTGAVVQLIRER-----NLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDR 317
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER + L F+ +G + V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 318 SQNERMQALDAFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 376
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG G SL++ + + + I + K
Sbjct: 377 AGASGDALSLFSPNEKKQLADIEKLIK 403
>gi|363756356|ref|XP_003648394.1| hypothetical protein Ecym_8298 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891594|gb|AET41577.1| Hypothetical protein Ecym_8298 [Eremothecium cymbalariae
DBVPG#7215]
Length = 638
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T A+T L + H D S ER + L F+ + + V T AAR
Sbjct: 415 TLVFVETKRMADALTDFLIMQNLSATAIHGDRSQAERERALQFFRTARANILVATAVAAR 474
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
G+DIPNV+HVI D + D++HR+GRT RAG GL T+ + N+++V
Sbjct: 475 GLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVV 524
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK---LC 147
L + L+ ++ + F RP+ VQ SV V G+D++ A+TGSGKT +L P++ +
Sbjct: 159 LDNLLLENIKMARFTRPTPVQKYSVPIVALGRDLMACAQTGSGKTGGFLFPVLSQSFGAG 218
Query: 148 TALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 206
A+ E+ N++ + P+ +VL P L Q+ A + V+ V GG
Sbjct: 219 PAVVTEESGNNNYYNSRKAYPTAVVLAPTRELATQIFDEAKKFTY---RSWVKPCVVYGG 275
Query: 207 QGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
I + D+IV+TP L + ++ R ++ VKY+V DEAD +L F
Sbjct: 276 AD--IRQQLRELEHGCDLIVATPGRLNDLLE---RGKISLCN-VKYLVLDEADRMLDMGF 329
Query: 259 QNQVIRLI 266
+ Q+ ++
Sbjct: 330 EPQIRHIV 337
>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
Length = 652
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N R+++K V + L+E ++E + A+ R +VF V + L+ GI
Sbjct: 456 NSRIEQKVEVVDPRGKEQRLLELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIR 515
Query: 451 CYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
H DL ++R K+L F+ V V TD AARG+DIP V VI F + D++H
Sbjct: 516 VASIHGDLRQDQRTKSLEAFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVH 575
Query: 510 RVGRTARAGQYGLVTSLYTESNR 532
R+GRT RAG+ G +L+TE ++
Sbjct: 576 RIGRTGRAGKTGKAITLFTEHDK 598
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 92 SDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALG 151
+ +LI + + P+ +QAAS L+G+D + AETGSGKT ++ +P +EKL
Sbjct: 227 TSKLIAKKPFAAYNAPTPIQAASWPFTLAGRDAIGIAETGSGKTMAFALPCVEKLSI--- 283
Query: 152 DSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI 211
S+ ++ D T PRA +++ P L Q + L++ G + AV + GG
Sbjct: 284 HSKKASKDYRSTRPRA--VIVAPTRELAMQTHEAVSGLASQVG---LTAVCIYGGASKDD 338
Query: 212 GK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
+ D+I +TP L + + + V + V DEAD +L F++ I
Sbjct: 339 QRALLRKNSGADIITATPGRLKDFLSDNTVN----LGDVMFAVLDEADRMLDKGFEDD-I 393
Query: 264 RLI 266
+LI
Sbjct: 394 KLI 396
>gi|406675544|ref|ZP_11082731.1| hypothetical protein HMPREF1170_00939 [Aeromonas veronii AMC35]
gi|404626934|gb|EKB23740.1| hypothetical protein HMPREF1170_00939 [Aeromonas veronii AMC35]
Length = 406
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +ATLP + A +L+ + + I N L+ ++E+ V ++V AL
Sbjct: 174 RQTLLFSATLPAELETLANGLLR----EPNRIEANPLNSVVNEIEERLYLVNKSSKVPAL 229
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
I +KE+ + +VF + D V + L AGI H + R + L +F
Sbjct: 230 ISLLKEQ-----AWPQVLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVREQALGDF 284
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+E K V V TD ARGI + + VI D SA ++HR+GRTARAG+ GL SL
Sbjct: 285 KEGKIRVLVATDLMARGIHVEALPVVINLDLPASAPVYVHRIGRTARAGREGLAISLVCH 344
Query: 530 SNRDLVDTIR 539
D++ IR
Sbjct: 345 GESDMLQAIR 354
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR 166
P+ +Q ++ L+G+D++ A+TGSGKT ++ +PL+++L +P+ +
Sbjct: 23 PTRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLLQRL--------------DPSSSQ 68
Query: 167 APSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAVCGG------QGWPIGKPDVIVS 219
LVL P L QV A + E L +R V +CGG Q P ++V+
Sbjct: 69 VQGLVLVPTRELATQV----TAALEEGAEALGLRIVTLCGGVAQERQQAELAQGPQLLVA 124
Query: 220 TPAAL 224
TP L
Sbjct: 125 TPGRL 129
>gi|388502288|gb|AFK39210.1| unknown [Lotus japonicus]
Length = 460
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VT+KSLGL+D L A E G+ PS +Q ++ +D++ AETGSGKT ++ +P++
Sbjct: 10 VTFKSLGLNDALCEACEKLGWKNPSKIQCEALPIAFQKRDIIGLAETGSGKTGAFALPIL 69
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L TP R +LVL P L Q+ AL + G V+ +
Sbjct: 70 QALLA--------------TPQRLFALVLTPTRELAYQISEQFEALGSSIG---VKCAVI 112
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP ++++TP L+++++ + + R ++Y+V DEAD +L
Sbjct: 113 VGGMDMMSQSIALAKKPHIVIATPGRLVDHLENTKGFSL---RSIQYLVMDEADRILNMD 169
Query: 258 FQNQVIRLINMF 269
F+ + +++ +
Sbjct: 170 FEVDLDKILKIL 181
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VFA+T + + + G H +S +R L F+ K + + TD A+RG
Sbjct: 255 IVFASTCTTTLRLALLTRNLGFTTVPLHGQMSQTKRLGALNKFKGKARSILIATDVASRG 314
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 315 LDIPHVDVVINYDIPNHSKDYIHRVGRTARAGRSGKSITFVTQYDIELYQRI 366
>gi|365538739|ref|ZP_09363914.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 421
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 106/201 (52%), Gaps = 31/201 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS L+ AL++ GF +P+ VQ+ ++ VL+GKDV+ A+TG+GKT ++ +P++++
Sbjct: 8 FQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFGLPILQR 67
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
++ ++E +LVL P L +QV ++LSA ++ V G
Sbjct: 68 FL-------DNQVEREANSKVVRALVLVPTRELAQQVF---DSLSAYAQSTTLKIVTAYG 117
Query: 206 GQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGV-----KYVVFDEADMLL 254
G + G D++++TP L++++ FVR + + +V DEAD +L
Sbjct: 118 GTSMQVQTRNLRGGTDILIATPGRLIDHL---------FVRNIILTQTEVLVLDEADRML 168
Query: 255 CGSFQNQVIRLINMFRFDEKQ 275
F + R++ DE+Q
Sbjct: 169 DMGFLPDIQRILQRMN-DERQ 188
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + K LK GI+ + D S R K L +F+ K + TD AA
Sbjct: 253 QVLVFTKTKRGSDELAKELKLDGIKAASINGDKSQGARQKALDDFKAGKVRALIATDVAA 312
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RGIDI + V+ D A D++HR+GRT RAG G SL + L++ I
Sbjct: 313 RGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGLTGFAVSLMSRDEEYLLEAI 366
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 30/190 (15%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD- 408
+ QY+FV ATLP++ + + FPD + I G +H + RL+E ++ + D +
Sbjct: 445 TTQYLFVTATLPLDIYNK----VVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEK 500
Query: 409 -----------ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL-----KTAGIECY 452
AL++ ++E + +T+VF N ++ V +L K + I+
Sbjct: 501 NPETAFSNKKLALVKIIEE-----SPVRKTIVFCNKIETCRKVENVLTRLDRKASQIKVL 555
Query: 453 CYHKDLSLEER---AKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
+H L E+R K +N Q +F VCTD A+RGID NV+HV+ D+ +++
Sbjct: 556 PFHAALDQEKRIANMKAFLNKQSSDSMFLVCTDRASRGIDFTNVNHVVLFDYPRDPSEYV 615
Query: 509 HRVGRTARAG 518
RVGRTAR
Sbjct: 616 RRVGRTARGA 625
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 25/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K +G D ++ AL + GF +PS +QA + GPVL G+ +IA ++GSGKT +YL P+I+
Sbjct: 262 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQ 321
Query: 145 KLCT--ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L A+G ++S P PR ++L P L QV++ ++S +G P R++
Sbjct: 322 NLRKEEAMGVHKSS-----PRNPRV--IILTPTAELSSQVLQNCRSISK-SGAPF-RSMV 372
Query: 203 VCGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVR--GVKYVVFDEADMLL 254
GG Q + + DV+++TP L + FV+ ++ VVFDE D+L
Sbjct: 373 ATGGFRQKTQLESLEQELDVLIATPGRFLYLLQEG------FVQLNNLRCVVFDEVDILF 426
Query: 255 CGSFQNQVI 263
QV+
Sbjct: 427 GEEGFEQVL 435
>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160380609|sp|A7E449.1|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 572
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 399 IEVTVDTQVDALIEAVKE---------RLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
+E++ + ++ ++E V E LE E ++ ++F T +T+ L+
Sbjct: 360 LELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQD 419
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ K + V TD A+RGID+ N++HV D+ ++ D
Sbjct: 420 GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSED 479
Query: 507 FLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
++HR+GRT RAGQ G +L+T N RDLV+ + A ++ P
Sbjct: 480 YIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDP 524
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 150 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 209
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L Q+ + + +R V
Sbjct: 210 HI----------NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSS---RIRNTCV 256
Query: 204 CGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ I+ + +R V Y+V DEAD +L
Sbjct: 257 YGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVTYLVLDEADRMLDMG 312
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ +++ R D +
Sbjct: 313 FEPQIRKILGQIRPDRQ 329
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 115/228 (50%), Gaps = 36/228 (15%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+ ++K LG+++ L A + G+ +P+ +Q ++ L G+DV+ AETGSGKT ++ VP+
Sbjct: 78 HTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPV 137
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
++ L R +LVL P L Q+ +AL + G V+
Sbjct: 138 LQSLLAC--------------AQRLHTLVLTPTRELAFQIAEQFDALGSSIG---VKTAV 180
Query: 203 VCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + KP V+++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 181 IVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNL---RALKYLVMDEADRILNM 237
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSS 294
F+++V +++ + D K++ ++ + ++ P++ SS
Sbjct: 238 DFESEVDKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSS 285
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF T + V +L+ GI H +S +R L F+ K V + TD A+RG
Sbjct: 322 MVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 381
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 382 LDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 433
>gi|386057057|ref|YP_005973579.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|347303363|gb|AEO73477.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
Length = 449
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G G P+ +QA ++ P L G+D++ AA+TG+GKT + +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV +A D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HASIRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K D++V+TP LL D R+ ++F + ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDILVATPGRLL---DLYRQNAVKFAQ-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAI 359
>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
Length = 670
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 405 TQVDALIEAVKER------LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
TQ +E V +R ++F E + T+VF T ++ + L H D
Sbjct: 421 TQSLVWVEEVDKRNALLDFIDFTKEDNLTLVFVETKRGADSLEEFLYNREFSVSSIHGDR 480
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ +ER + L NF+ K + V T AARG+DIPNV HVI D +++HR+GRT R
Sbjct: 481 TQDERERALKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRV 540
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAK 543
G G TS + + N RDLV+ + A +
Sbjct: 541 GNLGKATSFFNDKNKNLARDLVELLEEANQ 570
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 94 RLIR-ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL-CTALG 151
++IR +E + + RP+ VQ +V + +G+D++ A+TGSGKT ++L+P++ +
Sbjct: 198 KIIRDNVELARYSRPTPVQKYAVPIIAAGRDLMACAQTGSGKTAAFLIPMLNNMFVHGPA 257
Query: 152 DSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI 211
DS + ++++ LV+ P L Q+ A S VR V GG
Sbjct: 258 DSLDRCNEEDRRAQFPTGLVIAPTRELASQIYDEAKKFSY---RSHVRPCVVYGGAAIKG 314
Query: 212 GKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
D VI +TP L++ ID + + +++ R ++V DEAD +L F+ Q+ +
Sbjct: 315 QLSDLSRGCNVIFATPGRLIDIID-RGKLKLDCCR---FLVLDEADRMLDMGFEPQIREI 370
Query: 266 INMF 269
I +
Sbjct: 371 IQRY 374
>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea blandensis MED297]
gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
Length = 448
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 102/197 (51%), Gaps = 24/197 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ S L +L A+E G+ P+ VQ AS+ L GKD++I+AETGSGKT +YL+P + +
Sbjct: 2 FASFDLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHR 61
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ S+++P LV+ P L +QV++ AL+ G ++ V + G
Sbjct: 62 VL----------SERKPKAG-IRVLVMVPTRELAQQVMKDCEALTQQTG---LKTVIIRG 107
Query: 206 GQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GQ + P+++++TP + +++ ++ V+ +V DE D +L F+
Sbjct: 108 GQEFQYQASLLRRNPEIVIATPGRMTEHLNKNSTDLLD----VECLVLDECDRMLDMGFR 163
Query: 260 NQVIRLINMFRFDEKQL 276
++V+ + R D + L
Sbjct: 164 DEVLAIAGQIRNDHQTL 180
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VF T + L+ H ++ +ER + + F++ V V TD AA
Sbjct: 244 KAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATDLAA 303
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
RG+D+ V V+ D A S + +HRVGRT RAGQ GL SL + +L+ +I R
Sbjct: 304 RGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIER 359
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG++D L A + G+ P+ +Q ++ L GKDV+ AETGSGKT ++ +P+++
Sbjct: 40 TFKDLGVTDVLCEACDQLGWKSPTKIQVEAIPVALQGKDVIGLAETGSGKTGAFALPILQ 99
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L +P R +LVL P L Q+ AL + G V+ +
Sbjct: 100 SLLA--------------SPQRLHTLVLTPTRELAFQISEQFEALGSSIG---VKCAVIV 142
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP ++++TP L+++++ + + R +K++V DEAD +L F
Sbjct: 143 GGIDMMSQSLVLAKKPHIVIATPGRLIDHMENTKGFSL---RALKFLVMDEADRILNMDF 199
Query: 259 QNQVIRLINMF 269
+ +V +++ +
Sbjct: 200 ETEVDKILKVI 210
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + V +L+ GI H +S +R L F+ K V + TD A+RG
Sbjct: 282 MIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 341
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V VI D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 342 LDIPHVDCVINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 393
>gi|356483015|emb|CCE46010.1| putative DEAD-box ATP-dependent RNA helicase [Cancer pagurus]
Length = 547
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 22/218 (10%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF-----HNP-RL 394
R++ + +Q + +AT P + A LK D+I N HN ++
Sbjct: 276 RKIVDQIRPDRQTLMWSATWPKEVRNLAEDFLK------DYIQLNVGSLSLAANHNILQI 329
Query: 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
+ + E+ DT++ L+ + + + ++T++F T V VT+ L++ G C
Sbjct: 330 VDVYQEIEKDTKLRQLLNEMAQE-----KANKTIIFIETKRKVEDVTRGLRSTGWPAMCI 384
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D S +ER L F+ + + V TD AARG+D+ +V VI D+ + + D++HR+GR
Sbjct: 385 HGDKSQQERDWVLSEFRSGRAPILVATDVAARGLDVDDVKFVINYDYPSCSEDYVHRIGR 444
Query: 514 TARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
T R+ + G + +T N +DL++ ++ A ++ P
Sbjct: 445 TGRSDKTGTAYTFFTADNCKQAKDLIEVLKEANQVVNP 482
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 39/210 (18%)
Query: 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137
+F D N D ++ + G+ P+ +Q L G+D V A+TGSGKT
Sbjct: 108 YFGDYN-------FPDYVMAEIRRQGYEHPTPIQGQGWPISLQGRDFVGIAQTGSGKTLG 160
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNG 194
Y++P I + + +P R +L+L P L +Q++ +A +
Sbjct: 161 YILPAIVHI------------NHQPYLERGDGPIALILAPTRELAQQILTVAQDYGTSSK 208
Query: 195 EPLVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+R V GG P G ++ ++TP L++ ++ + +R Y+V
Sbjct: 209 ---IRPTCVFGGA--PKGPQIRDLERGVEICIATPGRLIDFLEAGKTN----LRRTTYLV 259
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F+ Q+ ++++ R D + L
Sbjct: 260 LDEADRMLDMGFEPQIRKIVDQIRPDRQTL 289
>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
Length = 788
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466
+D L VK + + T+ T+VF T + L+ G H DL ER K
Sbjct: 537 MDLLDAGVK--VAYSEPTALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFEREKH 594
Query: 467 LVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525
L F+ + V T AARG+DIPNV HVI D + +++HR+GRT R G GL TS
Sbjct: 595 LETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATS 654
Query: 526 LYTESNRDLV 535
+ + NR++
Sbjct: 655 FFNDKNRNIA 664
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 18/183 (9%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT----ALGDSENSN 157
SG+GRP+ VQ S+ +++ +D++ A+TGSGKT ++LVPLI + AL S
Sbjct: 303 SGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINNVLQNGPEALYRSTTQQ 362
Query: 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW--PIGK-- 213
+ + P A L+L P L Q+ + + P+ A+ G + + I K
Sbjct: 363 NGRRKQYPAA--LILSPTRELSLQIYNESRKFAYRT--PITSALLYGGRENYREQINKLR 418
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
++++TP L++ ++ + + G +++V DEAD +L F+ Q+ +++++
Sbjct: 419 LGVHILIATPGRLIDVME----QGYIGLDGCRFLVLDEADRMLDMGFEPQIRQIVDLSEM 474
Query: 272 DEK 274
K
Sbjct: 475 PPK 477
>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013500|sp|A5DZE6.1|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 664
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T + L G H D S ER K L F+ + + V T AAR
Sbjct: 435 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAAR 494
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
G+DIPNVSHVI D + D++HR+GRT RAG G+ T+ + +N+++V
Sbjct: 495 GLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIV 544
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 36/194 (18%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ S F +P+ VQ SV V +G+D++ A+TGSGKT +L P++
Sbjct: 182 LDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVL------- 234
Query: 151 GDSENSNSDKEPTPPRAPS----------LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
SE+ + P P + LV+ P L Q+ + + VR
Sbjct: 235 --SESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAY---RSWVRP 289
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V GG IG D++V+TP L + ++ R R+ +KY+V DEAD
Sbjct: 290 CVVYGGAD--IGNQIRQLDRGCDLLVATPGRLKDLLE---RGRVSLA-NIKYLVLDEADR 343
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ ++
Sbjct: 344 MLDMGFEPQIRHIV 357
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 12/211 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + + + +Q + +AT+P KK + ++ D +S N P + + +
Sbjct: 167 DIESILRQVKNERQTLLFSATMPPAIKKLS----RKYMNDPQTVSINRREVTAPSIDQFY 222
Query: 399 IEVTVDTQVDALIEAV-KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+V ++D+L + E+++ G ++F T V +T+ L+ G H D
Sbjct: 223 YKVLERNKLDSLCRIIDSEQIDLG------ILFCRTKKGVAELTEALQARGYIADGLHGD 276
Query: 458 LSLEERAKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ +R + F++ F + TD AARGID+ NVSHVI D ++HR+GRT R
Sbjct: 277 LTQSQRDAVMRKFRDSSIEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRTGR 336
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
AG+ GL +L T + +I + K+ P
Sbjct: 337 AGRKGLALTLVTPREMKHLRSIEQEIKMSIP 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 28/199 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + L + + + +A+ GF PS +QA ++ +L+G DV+ A+TG+GKT ++ +P++
Sbjct: 6 IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EK+ T +L+L P L QV LS +R + +
Sbjct: 66 EKVSTGR---------------HVQALILTPTRELAIQVSGEIQKLSKHKK---IRTLPI 107
Query: 204 CGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GGQ V++ TP +++++ RR+ + V V+ DEAD +L
Sbjct: 108 YGGQSIVHQIKALKQGVQVVIGTPGRIIDHL----RRKTLILDHVNTVILDEADEMLDMG 163
Query: 258 FQNQVIRLINMFRFDEKQL 276
F + + ++ + + + L
Sbjct: 164 FIDDIESILRQVKNERQTL 182
>gi|367026670|ref|XP_003662619.1| hypothetical protein MYCTH_2303449 [Myceliophthora thermophila ATCC
42464]
gi|347009888|gb|AEO57374.1| hypothetical protein MYCTH_2303449 [Myceliophthora thermophila ATCC
42464]
Length = 552
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E ++ ++F T +T+ L+ G H D ER L
Sbjct: 360 DRMIKHLEKIMEDKETQNKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVL 419
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG G+ +
Sbjct: 420 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGIAITF 479
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N RDLV ++ A + P
Sbjct: 480 FTTDNAKQARDLVSVLQEAKQHIDP 504
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +QA LSG+DVV AETGSGKT +Y +P I
Sbjct: 128 TFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 187
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L V++ ++ +R V
Sbjct: 188 HI----------NAQPLLAPGDGPIVLVLAPTRELA---VQIQQEITKFGKSSRIRNTCV 234
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 235 YGGV--PKGPQIRDLQRGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLD 288
Query: 256 GSFQNQVIRLINMFRFDEK 274
F+ Q+ ++++ R D +
Sbjct: 289 MGFEPQIRKIVSQIRPDRQ 307
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 28/184 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LG+ + AL+ G P+ VQ S+ ++ G+DV+ A TG+GKT ++L+P+++K
Sbjct: 14 FAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQK 73
Query: 146 LCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L N DK R P +LV+ P L Q+ AN L+A EP + +AV
Sbjct: 74 L----------NLDK-----RHPQALVIAPTRELALQITEEANRLAAT--EPSLSLLAVY 116
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ G +I+ TP LL+++ RR + G+K +V DEAD +L F
Sbjct: 117 GGQDVERQLRKLKGGAQLIIGTPGRLLDHL----RRGTLDLGGIKMLVLDEADQMLHMGF 172
Query: 259 QNQV 262
N V
Sbjct: 173 LNDV 176
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F T + + L+ G E H DLS +R + + F+E K + V TD AARG
Sbjct: 256 VIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARG 315
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542
+D+ V+HV D A ++HR+GRT RAG G+ +L T + + I+R A
Sbjct: 316 LDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVA 371
>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 425
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 10/211 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +++ K +Q +F +AT+P KT + +Q+ D + ++ +++++
Sbjct: 168 DIKKLLKLLPHERQSLFFSATMP----KTIVELSRQILGDFERVTIAPEKTTAEKVEQQI 223
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + LIE ++ +L T+VF+ T + K L+ AGI H +
Sbjct: 224 YHVNKKNKTKLLIELLETKL-----LDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNK 278
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S R + L F+E K V TD AARGIDI +S+V+ D A ++HR+GRT RA
Sbjct: 279 SQAARQRALGAFKEGKIQTLVATDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRA 338
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G GL S R + I + K PV
Sbjct: 339 GASGLAVSFCMLEERPFLKDIEKLIKQQIPV 369
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 104/203 (51%), Gaps = 30/203 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K LGL + ++RAL++ G+ P+ +QA S+ +L GKD++ A+TG+GKT ++ +P++
Sbjct: 1 MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRA----PSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+ L + PP+ +LV+ P L Q+ A + +R
Sbjct: 61 QHLYNS-------------APPKGRRSIKALVVTPTRELAIQIDENFKAYAKYTD---IR 104
Query: 200 AVAVCGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG Q + + DV+V+TP LL+ I+ + ++ ++Y V DEAD +
Sbjct: 105 NTVIYGGVKQAQQVNRLKSGIDVLVATPGRLLDLIN----QGFITLKHIEYFVLDEADQM 160
Query: 254 LCGSFQNQVIRLINMFRFDEKQL 276
L F + + +L+ + + + L
Sbjct: 161 LDMGFIHDIKKLLKLLPHERQSL 183
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
+ R++ K +Q + +AT+P + + A +L P I GN +
Sbjct: 164 EIRKITKQLPEKRQTLLFSATMPADIRSLAKDILHD--PLTIRI-GNDIPVSTVSHTLYP 220
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+E + T + LI+ +KE +T +VFA T V +K AG DL
Sbjct: 221 VEQHLKTAL--LIKLLKE-----TDTESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDL 273
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +R L F+E K + + TD AARGID+ +SHVI D + + HR+GRT RA
Sbjct: 274 SQNQRQTALNGFREGKYRILIATDIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRA 333
Query: 518 GQYGLVTSLYTESNRDLVDTI 538
+ G S T RDLVD+I
Sbjct: 334 TKSGDAFSFVTSEERDLVDSI 354
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 91/188 (48%), Gaps = 26/188 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ L ++ +E G+ P+ +Q S+ ++ G+DV+ A+TG+GKT ++ +P++
Sbjct: 1 MSFTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
++L G +L++ P L EQ+ N +S +++VA+
Sbjct: 61 QRLMNGPGKMVR-------------ALIVAPTRELAEQINESINEMSRSTK---LKSVAL 104
Query: 204 CGG--QGWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I K ++IV+ P LL+ + + + + G++ V DEAD +
Sbjct: 105 YGGVSKNPQIEKLRQGAEIIVACPGRLLDLVA----QGVADLSGIEVFVLDEADRMFDMG 160
Query: 258 FQNQVIRL 265
F ++ ++
Sbjct: 161 FLPEIRKI 168
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 27/191 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LGLS + R + G+ P+ +Q S+ VLSGKD V A TGSGKT ++LVP++EK
Sbjct: 38 FQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEK 97
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L E+S T ++VL P L Q +R A LS ++ + G
Sbjct: 98 L------KEHS------TKIGVRAVVLSPTRELAVQTLRFAKQLSKFTS---LKMALIVG 142
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G+G PDV+V+TP L++ + + +F ++ V+YVVFDEAD + F
Sbjct: 143 GEGMDQQFEAIASNPDVLVATPGRLMHLL----QEIPDFNLKAVEYVVFDEADRIFEMGF 198
Query: 259 QNQVIRLI-NM 268
Q+ ++ NM
Sbjct: 199 AEQLQEILKNM 209
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399
+ + KN S+Q + +ATLP K + D + I + + + LK +
Sbjct: 202 LQEILKNMPTSRQTLLFSATLP----KALVQFARAGLSDPELIRLDVENKISENLKMAFF 257
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
V + + V+E L G +T+VFA T V + +L IE C + D+
Sbjct: 258 TVRSLDKPALFLYMVREFLPKG---DQTIVFAATRHHVEFLHALLAANHIEASCAYGDMD 314
Query: 460 LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
R L F+ +K + + TD AARGIDIP +++V+ F +A F+HRVGR ARAG
Sbjct: 315 QASRKINLGKFRAKKTNLLIVTDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAG 374
Query: 519 QYGLVTSL 526
+ G S
Sbjct: 375 RSGTAFSF 382
>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
Length = 1229
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 132/271 (48%), Gaps = 41/271 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 534 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 593
Query: 145 KLCT--ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ AL D + A ++++ P LC Q+ + S G +R V
Sbjct: 594 HILDQPALEDGDG-----------AIAIIMAPTRELCMQIGKDIRKFSRSLG---LRPVC 639
Query: 203 VCGGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG G I + ++IV TP +++ + R+ +R V YVV DEAD +
Sbjct: 640 VYGGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDM 698
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLE--MDNSSLTQPDLQDEE 304
F+ QV+R+I+ R D +Q+ + ++KP+E + S+ D++
Sbjct: 699 GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKDVEQHV 758
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335
+ +SDE F ++ G+ +ET GSI
Sbjct: 759 VI----LSDEAKFFKLLELLGVYQET--GSI 783
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + + E+ + +
Sbjct: 706 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PVEVIVGGRSVVCKDV---EQHVVI 760
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D +A + E L ET +VF + + + + L A C H +
Sbjct: 761 LSD---EAKFFKLLELLGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 817
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG
Sbjct: 818 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNK 877
Query: 521 GLVTSLYT-ESNRDLVDTIRRAAKLGQPV 548
G + T E +R D IR G PV
Sbjct: 878 GCAFTFITPEQSRYAGDVIRALELSGTPV 906
>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 414
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 104/186 (55%), Gaps = 20/186 (10%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+V++ SL L D+L R L G+ +P+ +QA ++ +LSG+D++ +A+TG+GKT ++ +PL
Sbjct: 2 SVSFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPL 61
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+++L +E+ + + PT +L+L P L QV + + + + +V
Sbjct: 62 LQRLLDR--SAEDCLTSRLPT-----ALILVPTRELAVQVNGNVSQYAVNTD---IASVV 111
Query: 203 VCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ GG Q + D+IV+TP LL+++ RR + + Y+VFDEAD +L
Sbjct: 112 IYGGVSIDAQATKLAAGCDIIVATPGRLLDHL----RRGSLNLSSIDYLVFDEADRMLDM 167
Query: 257 SFQNQV 262
F +++
Sbjct: 168 GFMDEI 173
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAA 484
+ ++F+ + + + GIE +H DL R + L +F Q K V TD AA
Sbjct: 250 QVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAA 309
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DI + +V+ + A D++HR+GRT RAG G +LY+E + L++ +
Sbjct: 310 RGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALLLEEV 363
>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++V D + D + +K E AE ++T++F T V +T+I+ G H D
Sbjct: 334 VDVCEDYEKDQKL--MKLLTEISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGD 391
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S +ER L F+ + G+ V TD AARG+D+ +V VI D+ +++ D++HR+GRT R
Sbjct: 392 KSQQERDYVLSTFRNGRQGILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGR 451
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G +L+T SN DL++ +R A ++ P
Sbjct: 452 SNNTGTAYTLFTNSNANKANDLINVLREANQVINP 486
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
GL ++ L+ GF +P+ +QA + LSG+D+V A+TGSGKT +Y+VP + +
Sbjct: 117 GLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSLVHI--- 173
Query: 150 LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
++ + + P A L+L P L +Q+ ++A + V A C G
Sbjct: 174 ----QHQATIRRGDGPIA--LILAPTRELAQQIQQVATDFGS-----RVSANNTCVFGGA 222
Query: 210 PIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
P G +++++TP L++ ++ R + +R Y+V DEAD +L F+ Q
Sbjct: 223 PKGPQIRDLERGAEIVIATPGRLIDFLE----RGITNLRRCTYLVLDEADRMLDMGFEPQ 278
Query: 262 VIRLINMFRFDEKQL 276
+ +++ R D + L
Sbjct: 279 IRKIMGQIRPDRQVL 293
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 39/251 (15%)
Query: 75 SDTFFADDNVTWK-SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSG 133
+D+F + W+ + G++D L A + G+ +P+ +Q ++ L G+D++ AETGSG
Sbjct: 35 ADSFLS----CWRQAQGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSG 90
Query: 134 KTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193
KT ++ +P++ L TP R +LVL P L Q+ AL +
Sbjct: 91 KTGAFALPILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSI 136
Query: 194 GEPLVRAVAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
G V++ + GG Q + KP ++++TP L+++++ + + R +KY+V
Sbjct: 137 G---VQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVM 190
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP-------DL 300
DEAD +L F+ +V +++ + D K L + + +K ++ ++L P
Sbjct: 191 DEADRILNMDFETEVDKILKVIPRDRKTL-LFSATMTKKVQKLQRAALKNPVKCAVSSKY 249
Query: 301 QDEENLQDEYI 311
Q E LQ Y+
Sbjct: 250 QTVEKLQQYYL 260
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 284 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 343
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 344 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 403
Query: 547 PV 548
PV
Sbjct: 404 PV 405
>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
Length = 696
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+T++F T V +T+ +K G C H D S ER TL +F+ + + + TD AA
Sbjct: 345 KTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTPILIATDVAA 404
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRR 540
RG+D+ +V VI DF T++ D++HR+GRT R G + +T +N RDL+D ++
Sbjct: 405 RGLDVDDVKFVINFDFPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNNAAKARDLIDVLKE 464
Query: 541 AAKLGQP 547
A ++ P
Sbjct: 465 AKQVINP 471
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138
D T++ G +I L +GF P+ +QA LSG+D+V A+TGSGKT SY
Sbjct: 91 LPDPIFTFEESGFPAEIIDELRYAGFTAPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSY 150
Query: 139 LVPLIEKLCTALGDSENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGE 195
L+P + + D++P R +L+L P L +Q+ ++A+ D G
Sbjct: 151 LIPALIHI------------DQQPRLRRGDGPIALILSPTRELAQQIKQVAD----DFGR 194
Query: 196 PL-VRAVAVCGGQGWPIGKPD------VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
L + + GG + D ++++TP L++ + + +R Y+V D
Sbjct: 195 ALKYKNTCLFGGGKKRKQQEDLEYGVEIVIATPGRLIDFLSMNQTN----LRRCSYLVLD 250
Query: 249 EADMLLCGSFQNQVIRLINMFRFDEKQL 276
EAD +L F+ Q+ +I R D + L
Sbjct: 251 EADRMLDMGFEPQIRTIIEQIRPDRQTL 278
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 30/190 (15%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD- 408
+ QY+FV ATLP++ + + FPD + I G +H + RL+E ++ + D +
Sbjct: 434 TTQYLFVTATLPLDIYNK----VVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEK 489
Query: 409 -----------ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL-----KTAGIECY 452
AL++ ++E + +T+VF N ++ V +L K + I+
Sbjct: 490 NPETAFSNKKLALVKIIEE-----SPVRKTIVFCNKIETCRKVENVLTRLDRKASQIKVL 544
Query: 453 CYHKDLSLEER---AKTLVNFQEKGGVF-VCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
+H L E+R K +N Q +F VCTD A+RGID NV+HV+ D+ +++
Sbjct: 545 PFHAALDQEKRIANMKAFLNKQSSDSMFLVCTDRASRGIDFTNVNHVVLFDYPRDPSEYV 604
Query: 509 HRVGRTARAG 518
RVGRTAR
Sbjct: 605 RRVGRTARGA 614
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 25/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K +G D ++ AL + GF +PS +QA + GPVL G+ +IA ++GSGKT +YL P+I+
Sbjct: 251 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQ 310
Query: 145 KLCT--ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
L A+G ++S P PR ++L P L QV++ ++S +G P R++
Sbjct: 311 NLRKEEAMGVHKSS-----PRNPRV--IILTPTAELSSQVLQNCRSISK-SGAPF-RSMV 361
Query: 203 VCGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVR--GVKYVVFDEADMLL 254
GG Q + + DV+++TP L + FV+ ++ VVFDE D+L
Sbjct: 362 ATGGFRQKTQLESLEQELDVLIATPGRFLYLLQEG------FVQLNNLRCVVFDEVDILF 415
Query: 255 CGSFQNQVI 263
QV+
Sbjct: 416 GEEGFEQVL 424
>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
HTCC7211]
Length = 536
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q + +ATLP N + + L + + IS ++K++ ++V + + D LI
Sbjct: 177 QTLLFSATLPQNILRISERYLHK----PERISTGATSVPIAKIKQETLQVFKENKYDELI 232
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ +F A +VF T + + K LK G H DL +R + + +F+
Sbjct: 233 D------QFLARKGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFR 286
Query: 472 EKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
KG + + TD AARG+DIP + HVI D D++HR+GRTARAG G + T
Sbjct: 287 -KGLKRILIATDVAARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTP 345
Query: 530 SNRDLVDTIRR 540
+R + ++I +
Sbjct: 346 DDRSMWNSINK 356
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 141/320 (44%), Gaps = 62/320 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K L + + L +L F +P+ +Q ++ L GKD++ A+TG+GKT ++ +PLI K
Sbjct: 4 FKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L DK A +LV+CP L QV+ ++ +D ++ + G
Sbjct: 64 LIL----------DKN-----AFALVMCPTRELATQVMEAIKSIISDKIN--IKTALLIG 106
Query: 206 GQGW-----PIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G+ +G + +IV TP + +++ +R+ + KY+V DE D +L F
Sbjct: 107 GESMQKQLRQLGNRSRIIVGTPGRINDHL----KRKSLNLSATKYLVLDETDRMLDMGFT 162
Query: 260 NQVIRLINMFRFDEKQL----------SRMNESGVEKPLEMDNSSLTQPDLQ-DEENLQ- 307
Q+ ++ D + L R++E + KP + + + P + +E LQ
Sbjct: 163 PQIEMVLKFVPKDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQV 222
Query: 308 ----------DEYISDEGNF--------EGDSDVEGLTEETKS-----GSIKKKDWRRVR 344
D++++ +G+ D V+ L EE S G +++ RV
Sbjct: 223 FKENKYDELIDQFLARKGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVI 282
Query: 345 KNYQRSKQYIFVAATLPING 364
++++ + I +A + G
Sbjct: 283 NSFRKGLKRILIATDVAARG 302
>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 34/214 (15%)
Query: 63 AAAAVVSDKNGSSDTFFADDN------VTWKSLGLSDRLIRALENSGFGRPSIVQAASVG 116
AA A S+K ++ +D T++ LGL+D L+RA + G RP++VQ V
Sbjct: 17 AAVAAASNKKTAAPALLDEDAKAAKEITTFEGLGLTDWLVRACKELGMKRPTLVQQGCVP 76
Query: 117 PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176
+L+GKDV A+TGSGKT ++ +P+++KL +EN P +LVL P
Sbjct: 77 QILAGKDVFGLAQTGSGKTAAFALPILQKL------AEN--------PYGVFALVLTPTR 122
Query: 177 VLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI-- 228
L Q+ ++ A E +R+ V GG + +P ++++TP L ++
Sbjct: 123 ELAFQI---SDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPGRLRDHFMN 179
Query: 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
DP + KY+V DEAD L+ F++++
Sbjct: 180 DPGIP---DVFAKAKYLVLDEADRLMDVGFESEL 210
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR-LKEK 397
+ R V + ++Q + +AT+ N K L + D + Y F L+++
Sbjct: 209 ELRSVFETMPSNRQTLLFSATMTSNLK-----ALHDLSLDKAFFYQQYEGFKTVEALQQQ 263
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+I + + D + + LE + ++FA++ + ++ ++ ++ H
Sbjct: 264 YILTPANVK-DVYLMHIMSTLE-ERKIRSVIIFASSCRTCHLLSLMMSELEVDTTALHSM 321
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ++R +L F+ + + + TD A+RG+DIP V VI D D++HRVGRTAR
Sbjct: 322 KTQQQRLASLSRFKSGQVSILIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTAR 381
Query: 517 AGQYGLVTSLYTESNRDLVDTI 538
AG+ G SL T+ + LV I
Sbjct: 382 AGRGGSAVSLITQYDVQLVQDI 403
>gi|339008487|ref|ZP_08641060.1| putative ATP-dependent RNA helicase [Brevibacillus laterosporus LMG
15441]
gi|338774287|gb|EGP33817.1| putative ATP-dependent RNA helicase [Brevibacillus laterosporus LMG
15441]
Length = 409
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 25/201 (12%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN-------YLHFHNPRLK 395
V + R Q +F +ATL K A++K M + I+ LHF+ L
Sbjct: 168 VLRRLMRDTQRLFFSATL----SKQTQALIKSMAYEPVVIATEAPESKYEVLHFY---LV 220
Query: 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
E+ + DAL RL +T+VF NT++ V + + L +EC H
Sbjct: 221 EEG-----RKKADAL-----RRLIRLVNAKKTLVFLNTIERVDEIKEKLTYHHLECELLH 270
Query: 456 KDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
+D +RA+ L F+E K V + TD AARGIDI +V VI D AT A ++HR GRT
Sbjct: 271 RDTPKVDRARALQQFREGKLPVLIVTDVAARGIDISDVELVIHYDPATDADTYVHRSGRT 330
Query: 515 ARAGQYGLVTSLYTESNRDLV 535
R G+ GLV S+ + R ++
Sbjct: 331 GRMGKAGLVFSIVLPNQRFII 351
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 27/184 (14%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L G+ + + +QA ++ +L GKDV+ + TGSGKT +YL+PL++ L
Sbjct: 17 LRERGYEKLTPIQAQTLPVILEGKDVIAESPTGSGKTMAYLLPLVQNL------------ 64
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIGK--- 213
+ T LVL P L Q+ R A L A G + A A+ GG + K
Sbjct: 65 --DETKKELQVLVLAPTQELVMQIYREATQLLASIG---MHAAALIGGVDAKRQLDKLKT 119
Query: 214 -PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272
P +++ TP + ++ ++ + V VK VV DEAD +L F N V ++ D
Sbjct: 120 HPAIVIGTPGRVKELLEIRKLK----VHTVKSVVIDEADRMLDRGFANSVQDVLRRLMRD 175
Query: 273 EKQL 276
++L
Sbjct: 176 TQRL 179
>gi|398820506|ref|ZP_10579026.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398228828|gb|EJN14930.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 524
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R+ ++
Sbjct: 183 DIRKIVAKLPIRRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTAERINQRI 238
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ + +R +VF T V K L+ AGI H +
Sbjct: 239 IQVDFSAKPAFLAKLLKQE-----QVNRALVFTRTKHGADKVVKTLEKAGIAASAIHGNK 293
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ ++HVI D ++HR+GRTAR
Sbjct: 294 SQNHRERTLAQFRS-GEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTAR 352
Query: 517 AGQYGLVTSL 526
AG G SL
Sbjct: 353 AGAEGTAISL 362
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ GL++ + RAL + P+ +QA ++ L+G+DVV A+TG+GKT S+ +P++
Sbjct: 16 TSFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPIL 75
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L EN +P P LVL P L Q++ NA +R +
Sbjct: 76 HRLL------ENR---IKPQPKTCRVLVLSPTRELSGQILDSFNAYGRH-----IRLSST 121
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G P+G+ DV+V+TP LL+ + + + V+++V DEAD +L
Sbjct: 122 LAIGGVPMGRQVRALMPGVDVLVATPGRLLDLVQSNGLK----LGSVEFLVLDEADRMLD 177
Query: 256 GSFQNQVIRLI 266
F N + +++
Sbjct: 178 MGFINDIRKIV 188
>gi|393236170|gb|EJD43720.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 650
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAAR 485
T++F T ++ L H D S ER L F Q + + V T AAR
Sbjct: 442 TLIFVETKRMADILSDFLYANQFPATSIHGDRSQRERESALATFRQGRTPIMVATAVAAR 501
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
G+DIPNV+HVI D + D++HR+GRT RAG G+ T+ + N RDLVD +R A
Sbjct: 502 GLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGIATAFFNRGNKNIIRDLVDLLREA 561
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 99 LENSGFGR---PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS-- 153
LEN F P+ VQ S+ V G+D++ A+TGSGKT +L P++ L ++ G S
Sbjct: 191 LENIAFAHYSTPTPVQKHSIPIVAGGRDLMACAQTGSGKTAGFLFPILSALFSS-GPSKI 249
Query: 154 --ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG----- 206
+NSNS L+L P L Q+ A + + V+ V GG
Sbjct: 250 PVDNSNSYSRSRKAYPSVLILAPTRELVSQIHDEARKFAYRS---WVKPALVYGGADINQ 306
Query: 207 QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265
Q I + D++ +TP L++ I+ R R+ ++Y+V DEAD +L F+ Q+ R+
Sbjct: 307 QLRLIERGCDLLSATPGRLVDLIE---RGRISLAN-IRYLVLDEADRMLDMGFEPQIRRI 362
Query: 266 I 266
+
Sbjct: 363 V 363
>gi|347836738|emb|CCD51310.1| hypothetical protein [Botryotinia fuckeliana]
Length = 563
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 399 IEVTVDTQVDALIEAVKE---------RLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
+E++ + ++ ++E V E LE E ++ ++F T +T+ L+
Sbjct: 362 LELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQD 421
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ K + V TD A+RGID+ N++HV D+ ++ D
Sbjct: 422 GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSED 481
Query: 507 FLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
++HR+GRT RAGQ G +L+T N RDLV+ + A ++ P
Sbjct: 482 YIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDP 526
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 152 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 211
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L V++ ++ +R V
Sbjct: 212 HI----------NAQPLLAPGDGPIVLVLAPTRELA---VQIQQEITKFGKSSRIRNTCV 258
Query: 204 CGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ I+ + +R V Y+V DEAD +L
Sbjct: 259 YGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVTYLVLDEADRMLDMG 314
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ +++ R D +
Sbjct: 315 FEPQIRKILGQIRPDRQ 331
>gi|400595961|gb|EJP63749.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 472
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ D L + E+ G+ P+ +QA S+ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 51 TFKELGIVDALCESCESVGYTTPTSIQAKSIPVALQGRDVIGLAETGSGKTAAFALPMLQ 110
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P LVL P L Q+ + AL A +R +
Sbjct: 111 ALL------------EKPQP--LFGLVLAPTRELAAQIGQTFEALGALIS---LRCAVIV 153
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q +G KP VIV+TP L+++++ + + R +KY+V DEAD LL F
Sbjct: 154 GGLDMVPQAIALGKKPHVIVATPGRLVDHLEKTKGFSL---RTLKYLVMDEADRLLDMDF 210
Query: 259 QNQVIRLIN 267
+ +L+
Sbjct: 211 GPSIDKLLK 219
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAA 484
+VF TV V +L+T G H LS R L F +GG + V TD AA
Sbjct: 294 IVFTRTVYETQRVAILLRTLGFGAIPLHGQLSQSARLGALNKF--RGGTREILVATDVAA 351
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
RG+DIP V V+ D + + ++HRVGRTARAG+ G+ SL T+ + +L I A
Sbjct: 352 RGLDIPKVDIVLNYDIPSDSKTYIHRVGRTARAGKSGVAISLVTQYDLELFTRIEAA 408
>gi|427795535|gb|JAA63219.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 532
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 25/182 (13%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138
+D + + +GL DRL++A+ G+G+P+ +Q +V +L GKDV+ A TGSGKT +
Sbjct: 5 MSDKELEFHEMGLDDRLLKAIAKLGWGKPTPIQEKAVPLILEGKDVLARARTGSGKTGGF 64
Query: 139 LVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+P+I +L D E P ++L P LC Q+ R + LS +
Sbjct: 65 CLPMIHRLMQYRVDQE----------PATRGIILAPTKELCGQIARCVSQLSGT----WL 110
Query: 199 RAVAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V V G I +P ++V TP+ +L ++ + ++ +V DEAD+
Sbjct: 111 RCVDVSGTADLAIQRPLLAERPAIVVGTPSRILAHL-----KAGHLTLKLEMLVIDEADL 165
Query: 253 LL 254
+L
Sbjct: 166 VL 167
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 28/177 (15%)
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
RL + I D + L K RL G +T++F TVD + V L+ G+ C
Sbjct: 224 RLAQYVIRCEEDDKFALLCALFKLRLIVG----KTLIFVTTVDRCFVVKLFLEQFGVRCC 279
Query: 453 CYHKDLSLEERAKTLVNFQE-KGGVFVCTD-----------------------AAARGID 488
+ +L L RA L F E + + V +D RG+D
Sbjct: 280 VLNSELPLASRALILNQFNEGRYEIMVASDEKGAEVQDKAPKKSKKRNQDPEYGVCRGLD 339
Query: 489 IPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545
NV++VI DF + + HRVGRTAR + G SL + L++ +++A G
Sbjct: 340 FQNVANVINLDFPATVQAYQHRVGRTARGDRKGTALSLVKDREAHLLEAVQKALPEG 396
>gi|451847658|gb|EMD60965.1| hypothetical protein COCSADRAFT_174289 [Cochliobolus sativus ND90Pr]
Length = 1084
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Query: 395 KEKWIEVTV---DTQVDALIEAVKERLE--FGAETSRTMVFANTVDAVYAVTKILKTAGI 449
++ WI+V + D + I+ + E LE + ++ ++F T +T+ L+ G
Sbjct: 875 QKDWIQVNIGSMDLSANHRIQQIVEHLETIMSDKENKILIFTGTKRVADEITRFLRQDGW 934
Query: 450 ECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFL 508
H D + ER L F+ K + V TD A+RGID+ N++HV D+ ++ D++
Sbjct: 935 PALSIHGDKAQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYV 994
Query: 509 HRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
HR+GRT RAG G +L+T N RDLV + + + P
Sbjct: 995 HRIGRTGRAGANGTAITLFTTENSKQARDLVQILTESKQQIDP 1037
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF +P+ +QA LSG+DVV AETGSGKT +Y +P I
Sbjct: 676 TFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIV 735
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P E V++ +S +R V
Sbjct: 736 HI----------NAQPLLAPGDGPIVLILAPT---RELAVQIQQEISKFGKSSRIRNTCV 782
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 783 YGGV--PKGPQIRDLARGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 836
Query: 256 GSFQNQVIRLINMFRFDEK 274
F+ Q+ ++I R D +
Sbjct: 837 MGFEPQIRKIIGQIRPDRQ 855
>gi|357500169|ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 502
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LGL + L+ A E G+ P +Q ++ P L GKD++ AETGSGKT ++ +P++
Sbjct: 74 SFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTGAFALPILH 133
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P P + V+ P L Q+ AL ++ G V+ +
Sbjct: 134 ALLEA------------PRPNHFFACVMSPTRELAIQISEQFEALGSEIG---VKCAVLV 178
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q I K P +IV TP +L+++ K + R +KY+V DEAD LL F
Sbjct: 179 GGIDMVQQSVKIAKLPHIIVGTPGRVLDHL--KNTKGFSLAR-LKYLVLDEADRLLNEDF 235
Query: 259 QNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ + ++ M F F K++ ++ + P++++ SS
Sbjct: 236 EESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSS 281
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAA 483
S +MVF T D+ + IL+ G++ + +S +R L F+ + +CTD A
Sbjct: 315 STSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVA 374
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 375 SRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 420
>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
Length = 548
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R+ + ++Q +F +AT M P+ + I+ +LH R++
Sbjct: 167 DIERIFQLTPFTRQTLFFSAT---------------MAPEIERITNTFLHAPA-RIEVAR 210
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTM----------------VFANTVDAVYAVTK 442
T +T LI+ R + A+ R + +F N V V K
Sbjct: 211 QATTSETITQKLIQITPPRRDQSAKAKRELLRAIIKSEGEACTNAIIFCNRKTDVDIVAK 270
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFA 501
LKT G H DL R KTL F++ + + +D AARG+DIP VSHV D
Sbjct: 271 SLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSLQLLIASDVAARGLDIPAVSHVFNYDLP 330
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
+ A D++HR+GRT RAG+ G S+ T ++
Sbjct: 331 SHAEDYVHRIGRTGRAGRLGTAYSIGTPAD 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ L L ++RA+ ++G+ P+ +QA ++ P L G+DV+ A+TG+GKT S+ +P++
Sbjct: 4 FTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVTM 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADNGE 195
L + + PR SLVLCP L QV R+ AL
Sbjct: 64 LSSGRARARM---------PR--SLVLCPTRELAAQVAENFDTYAKYTRLTKAL------ 106
Query: 196 PLVRAVAVCGGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
L+ V+ G Q I + DV+++TP LL++ + R + GV+ +V DEAD +L
Sbjct: 107 -LIGGVSF-GEQDKLIDRGVDVLIATPGRLLDHFE----RGKLLLTGVQIMVVDEADRML 160
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F + R+ + F + L
Sbjct: 161 DMGFIPDIERIFQLTPFTRQTL 182
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 12/189 (6%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
++K+ RS+Q + +AT+ K A VL + I + +P L +++I VT
Sbjct: 319 IQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPV----TIETTKANRVSPTLTQEFIRVT 374
Query: 403 VDTQVDA-LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSL 460
+ Q +A L+ A + T R ++F + + +L G ++ H +LS
Sbjct: 375 SEQQREATLLAACTKHF-----TKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQ 429
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
++R K L +F+ K +CTD AARG+D+P+V VI + ++HRVGRTARAG
Sbjct: 430 QQRVKALADFESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGA 489
Query: 520 YGLVTSLYT 528
G ++YT
Sbjct: 490 SGTSVTMYT 498
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+V W SL LS ++R L GF P+ VQ + L +D++ AETGSGKT +L+P+
Sbjct: 132 HVAWASLQLSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPI 191
Query: 143 IEKLCTALGDSENSNSDKEPTPPR-------APSLVLCPNVVLCEQVVRMANALSADNGE 195
+E+LC A S + K+P R +LVL P L Q +M +
Sbjct: 192 VERLCQA---SHVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFT--KFA 246
Query: 196 PLVRAVAVCG----GQGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
PL + V G Q + +PDV+++TP +L+ + +E + VV DE
Sbjct: 247 PLTSCLVVGGFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEM---CEIVVLDEC 303
Query: 251 DMLLCGSFQNQVIRLIN 267
D LL F+++ + +I
Sbjct: 304 DRLLEMGFRDECLTIIQ 320
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 111/209 (53%), Gaps = 21/209 (10%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
SDT T+ GL+ +++A++ SG+ P+ +QA ++ VL+G+DV+ AA+TG+GK
Sbjct: 2 SDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGK 61
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSAD 192
T S+ +P+I++L L + S S P R P +L+L P L +QV AN S
Sbjct: 62 TASFSLPIIQRL---LPQASTSAS-----PARHPVRALILTPTRELADQVA--ANVQSYA 111
Query: 193 NGEPLVRAVAVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
L AV G P + +++++TP LL+++ +++ + V+ +V
Sbjct: 112 KHTALRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHV----QQKTANLGQVQILVL 167
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + R++N+ + + L
Sbjct: 168 DEADRMLDMGFLPDLQRILNLLPKERQTL 196
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + +Q + +AT KK A L+ D I + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLR----DPQTIEVARSNSTATNVTQIV 236
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV + A+++ ++ER + +VF N+ + + L+ G+ H D
Sbjct: 237 YEVAEGDKTGAVVQLIRER-----SLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDR 291
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ER + L F+ +G + V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 292 TQNERMQALDAFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 350
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG G SL + + R + I + K
Sbjct: 351 AGASGDALSLCSPNERKQLADIEKLIK 377
>gi|326473025|gb|EGD97034.1| ATP-dependent RNA helicase DBP10 [Trichophyton tonsurans CBS
112818]
Length = 941
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 95 FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T A L+L P+ L Q +++ L ++ V + G
Sbjct: 155 LRN------------HSTKVGARGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVG 199
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ PD+I++TP L+ N+D + ++Y VFDEAD L
Sbjct: 200 GDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLD---------LSSIRYAVFDEADRLF 250
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 251 EMGFAAQLTEILHALPTSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQ 309
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + +L+ +G + L+ R + NF+ + V TD AAR
Sbjct: 379 TIVFVATKHHVEYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAAR 438
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + ++HRVGRTARAGQ G SL +S+
Sbjct: 439 GIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSD 484
>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
Length = 862
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 10/198 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+++Q + V+AT+P + +L + P+ I +Y+ + LK ++ V D ++
Sbjct: 179 KNRQCVLVSATMPTALASFSKVMLNE--PEVIQIDSDYIL--SETLKLTFLFVREDEKLA 234
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
+L+ ++ + R ++F T V + KIL++ I + ++ E R L
Sbjct: 235 SLLYLLRNTI---PSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLN 291
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F++ K + TD AARG+DIP + +VI DF S F+HR GRTARAGQ+G SL
Sbjct: 292 TFRKNKSRALIVTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLI 351
Query: 528 TESNRDLVDTIRRAAKLG 545
T +RDL TI LG
Sbjct: 352 T--SRDLPYTIDLCLFLG 367
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T++ G S +L+ +++ G+ P+ +Q +L+G+DVV A TGSGKT +++P+IE
Sbjct: 5 TFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64
Query: 145 KL-CTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L C S + R ++L P L Q R+ L+ + A+
Sbjct: 65 RLGC----------SHSQIVGIRG--VILSPTRELALQTYRVVRKLACKTN---LVVCAL 109
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G PD++V+TP L ++I + VK +V DEAD L
Sbjct: 110 TGGSSLDRQFESLSGNPDIVVATPGRLFHHIIEAGLSLI----AVKIIVLDEADRLFEMG 165
Query: 258 FQNQVIRLI 266
+Q+ +++
Sbjct: 166 LASQIEKIL 174
>gi|326477276|gb|EGE01286.1| ATP-dependent RNA helicase DBP10 [Trichophyton equinum CBS 127.97]
Length = 941
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 95 FQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 154
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T A L+L P+ L Q +++ L ++ V + G
Sbjct: 155 LRN------------HSTKVGARGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVG 199
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ PD+I++TP L+ N+D + ++Y VFDEAD L
Sbjct: 200 GDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLD---------LSSIRYAVFDEADRLF 250
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 251 EMGFAAQLTEILHALPTSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQ 309
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + +L+ +G + L+ R + NF+ + V TD AAR
Sbjct: 379 TIVFVATKHHVEYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAAR 438
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + ++HRVGRTARAGQ G SL +S+
Sbjct: 439 GIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSD 484
>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
Length = 629
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 25/190 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+K L +L++ +E +GFG+P+ VQ S+ VL+G+D++ A+TGSGKT ++L P+I
Sbjct: 154 FKEANLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISN 213
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVV-------LCEQVVRMANALSADNGEPLV 198
L T G P P +LV CP+V+ L Q+ + + G
Sbjct: 214 LMTQPG-----YETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGR--- 265
Query: 199 RAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R V GG D++V+TP L++ ID R + V+Y+V DEAD
Sbjct: 266 RTVVAYGGAAIQYQLKQLERGCDILVATPGRLVDLID----RGSISLHNVQYLVLDEADR 321
Query: 253 LLCGSFQNQV 262
+L F+ Q+
Sbjct: 322 MLDMGFEPQI 331
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455
+K++ D + D ++EA+ + + T+VF T + L G + H
Sbjct: 387 QKFVYCKDDEKRDLMLEAI------ASVETLTLVFVKTKKEASILEYFLMKNGFKSSSIH 440
Query: 456 KDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
D + ER L NF+ + V TD A+RG+DI +V HVI D + D++HR+GRT
Sbjct: 441 GDKTQRERETALENFRRGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRT 500
Query: 515 ARAGQYGLVTSLYTESNRDLVDTI 538
RAG G+ TS +T+ N + D +
Sbjct: 501 GRAGNTGISTSFFTDKNNQIADDL 524
>gi|344174090|emb|CCA85871.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia syzygii
R24]
Length = 658
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 37/250 (14%)
Query: 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148
LGL +R++RAL + +P+ VQA ++ LSG D+++ ++TGSGKT ++++P I+++
Sbjct: 89 LGLDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISE 148
Query: 149 --------ALGDSENSNSDK-EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
A G + + P+P + LVL P L QV A+ G L R
Sbjct: 149 QPEPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQY----GRHLRR 204
Query: 200 AV--AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V ++ GG +P PD+I++TP LL++ID R + + +VFDEAD
Sbjct: 205 IVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGR----IDLSALDMLVFDEAD 260
Query: 252 MLLCGSFQNQVIRLI-------NMFRFD---EKQLSRMNESGVEKP--LEMDNSSLTQPD 299
+L F + + ++ M F ++++ ++ E + P +E+ + + Q +
Sbjct: 261 RMLDMGFADDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSN 320
Query: 300 LQDEENLQDE 309
+++ + D+
Sbjct: 321 IEERLHFTDD 330
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCT 480
A + +VF T ++ + L G H D+ R +TL + + V V T
Sbjct: 345 ATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTLTALRRGQLRVLVAT 404
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 405 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNHGD 455
>gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 512
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q I AT PI + A + K P I + N R+K+ +EV + D
Sbjct: 274 QKRQTIMFTATWPIGVRNLAASFTKN--PVTVTIGDSSDIRANKRIKQ-IVEVLQPYEKD 330
Query: 409 ALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ + + R + GA+ + R +VF V + + + G + H D+S ER ++L
Sbjct: 331 SRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSL 390
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ + V TD AARG+DIP V V+ F + D++HR+GRT RAG GL +L
Sbjct: 391 EAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITL 450
Query: 527 YTESNRDL 534
+TE ++ L
Sbjct: 451 FTERDKAL 458
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QA S +G+D++ AETGSGKT ++ +P + ++ + NS + +P
Sbjct: 116 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVL----ELNNSETSCKPC 171
Query: 164 PPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVS 219
+L++ P V + +Q++R ++A+ D G + + Q I V+++
Sbjct: 172 -----ALIITPTRELAVQIYDQLLRFSSAV--DVGIACIYGGSPKDHQRREIRNASVVIA 224
Query: 220 TPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
TP L + + + + GVKY+V DEAD +L F+ +
Sbjct: 225 TPGRLKDF----QADQTINLSGVKYLVLDEADRMLDKGFEQDI 263
>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
Length = 457
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 34/193 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K+LGLS + L+ G+ +P+ VQA +V L+GKDV+ A+TGSGKT ++ +P+IE
Sbjct: 3 SFKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL--SADNGEPLVRAVA 202
+ +P R SLVLCP L +QV + L + DN V+ +
Sbjct: 63 AI--------------DPRCFRVQSLVLCPTRELADQVAKALRELARAKDN----VKVLT 104
Query: 203 VCGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+CG G PIG ++V TP +D R+ + G+K +V DEAD +L
Sbjct: 105 LCG--GVPIGPQIGSLSHGAHIVVGTP----GRVDDHLRKGTLSLDGLKVLVLDEADRML 158
Query: 255 CGSFQNQVIRLIN 267
F+ V +++
Sbjct: 159 DMGFEEVVTSIVS 171
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC 453
++E + E+ D Q A + A+ R + ++VF T ++ L G
Sbjct: 215 IEESFYEIQPD-QRAAAVAALLSRFQ----PVSSLVFCTTKRDCDELSDELGRLGFSALS 269
Query: 454 YHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVG 512
H DL ER LV F + V V TD AARG+DI + VI A+ A HRVG
Sbjct: 270 LHGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGLPLVINAEPARDPEVHTHRVG 329
Query: 513 RTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RT RAG+ G +L T R R A+ G+PV
Sbjct: 330 RTGRAGEQGHAVTLCTP--RQGHKITRLEAERGEPV 363
>gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str.
Silveira]
Length = 512
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+ +Q I AT PI + A + K P I + N R+K+ +EV + D
Sbjct: 274 QKRQTIMFTATWPIGVRNLAASFTKN--PVTVTIGDSSDIRANKRIKQ-IVEVLQPYEKD 330
Query: 409 ALIEAVKERLEFGAETS-RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
+ + + R + GA+ + R +VF V + + + G + H D+S ER ++L
Sbjct: 331 SRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSL 390
Query: 468 VNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ + V TD AARG+DIP V V+ F + D++HR+GRT RAG GL +L
Sbjct: 391 EAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITL 450
Query: 527 YTESNRDL 534
+TE ++ L
Sbjct: 451 FTERDKAL 458
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 19/163 (11%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QA S +G+D++ AETGSGKT ++ +P + ++ + NS + +P
Sbjct: 116 FSSPTPIQAVSWPLAFAGRDLIGVAETGSGKTLAFGLPCLRRVL----ELNNSETSCKPC 171
Query: 164 PPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVS 219
+L++ P V + +Q++R ++ + D G + + Q I V+++
Sbjct: 172 -----ALIITPTRELAVQIYDQLLRFSSVV--DVGIACIYGGSPKDHQRREIRNASVVIA 224
Query: 220 TPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
TP L + + + + GVKY+V DEAD +L F+ +
Sbjct: 225 TPGRLKDF----QADQTINLSGVKYLVLDEADRMLDKGFEQDI 263
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
SDT T+ GL+ +++A++ SG+ P+ +QA ++ VL+G+DV+ AA+TG+GK
Sbjct: 2 SDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGK 61
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSAD 192
T S+ +P+I++L ++ +P R P +L+L P L +QV AN S
Sbjct: 62 TASFSLPIIQRLL--------PHASTSASPARHPVRALILTPTRELADQVA--ANVQSYA 111
Query: 193 NGEPLVRAVAVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
L AV G P +++++TP LL+++ +++ + V+ +V
Sbjct: 112 KHTALRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHV----QQKTANLGQVQILVL 167
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + R++N+ + + L
Sbjct: 168 DEADRMLDMGFLPDLQRILNLLPKERQTL 196
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + +Q + +AT KK A L+ P ++ + N + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRN--PQTIEVARSNSTATN--VTQIV 236
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV + A+++ ++ER + +VF N+ + + L+ G+ H D
Sbjct: 237 YEVAEGDKTGAVVQLIRER-----NLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDR 291
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER + L F+ +G + V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 292 SQNERMQALDAFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 350
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG G SL++ + + + I + K
Sbjct: 351 AGASGDALSLFSPNEKKQLADIEKLIK 377
>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
Length = 473
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 399 IEVTVDTQVDALIEAVKE---------RLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
+E++ + ++ ++E V E LE E ++ ++F T +T+ L+
Sbjct: 272 LELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQD 331
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ K + V TD A+RGID+ N++HV D+ ++ D
Sbjct: 332 GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSED 391
Query: 507 FLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
++HR+GRT RAGQ G +L+T N RDLV+ + A ++ P
Sbjct: 392 YIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDP 436
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 62 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 121
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L V++ ++ +R V
Sbjct: 122 HI----------NAQPLLAPGDGPIVLVLAPTRELA---VQIQQEITKFGKSSRIRNTCV 168
Query: 204 CGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ I+ + +R V Y+V DEAD +L
Sbjct: 169 YGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVTYLVLDEADRMLDMG 224
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ +++ R D +
Sbjct: 225 FEPQIRKILGQIRPDRQ 241
>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 533
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 34/231 (14%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
++VT++SLG+ + L+ A + +P+ +Q S+ L +D++ AETGSGKT ++ +P
Sbjct: 94 EDVTFQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALP 153
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
+I+ L A P P A LVL P LC Q+ AL G L V
Sbjct: 154 VIQNLLDA------------PQPFYA--LVLSPTRELCMQIAEHFEALGV--GISLKTTV 197
Query: 202 AVCG----GQGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V G Q + KP +I+ TP +L ++ + + F + +K++V DEAD LL
Sbjct: 198 IVGGLDPMAQAIALSKKPHIIIGTPGRILYHM--QNTKGFNF-KALKFLVLDEADKLLNM 254
Query: 257 SFQ---NQVIRLI----NMFRFD---EKQLSRMNESGVEKPLEMDNSSLTQ 297
F+ NQ++ +I N F F ++ ++ + ++ P++++ SS Q
Sbjct: 255 DFEKDINQILDIIPKKRNTFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQ 305
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVF 477
EF TS ++F T +T +L+ G H +S +R + F+ + +
Sbjct: 332 EFAGNTS--IIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKIL 389
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
V TD A+RG+DIP+V VI D T+A +++HRVGRTARAG+ G S T+ + ++
Sbjct: 390 VATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEM 446
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 107/196 (54%), Gaps = 23/196 (11%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D VT+ + GL ++RAL SG+ R + +QAA++ V++G+DV+ AA+TG+GKT + +P
Sbjct: 13 DPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLP 72
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+I+ L L D+ S S P R P +L+L P L +QV + +R
Sbjct: 73 IIQNL---LPDANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAKHTA---LR 121
Query: 200 AVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ V GG Q + + +V+V+TP LL+++ ++R + V+ +V DEAD +
Sbjct: 122 SAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHV----QQRSVNLSQVRMLVLDEADRM 177
Query: 254 LCGSFQNQVIRLINMF 269
L F + R+IN+
Sbjct: 178 LDMGFLPDLQRIINLL 193
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT KK A + L+ P ++ + N +++
Sbjct: 185 DLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRH--PQTIEVARSNATADN--VRQVI 240
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + AL+ +++R E G S+ +VF+N+ + + L+ I H D
Sbjct: 241 YTVPDGHKQAALVHLLRQRAEQGLP-SQCIVFSNSKIGCSRLARALEREKINANAIHGDK 299
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 300 TQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 359
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 360 GASGDALSLFAPGDERLLADIEKLIKRNLP 389
>gi|223590190|sp|A5DAC8.2|DBP3_PICGU RecName: Full=ATP-dependent RNA helicase DBP3
gi|190344457|gb|EDK36135.2| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
6260]
Length = 534
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVF 477
++G++ + +VFA V +L+ +G H DLS ++R L +F+ +
Sbjct: 366 QYGSD-QKILVFALYKKEATRVEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLL 424
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537
+ TD AARG+DIPNV VI F + D++HR+GRT RAGQ G+ +L+TE + L
Sbjct: 425 LATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGA 484
Query: 538 IRRAAK-LGQPV 548
+ + GQPV
Sbjct: 485 LMNVLRGAGQPV 496
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 29/170 (17%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F +P+ +Q+AS +L+G DVV AETGSGKT ++ VP I + T +N +
Sbjct: 149 FPKPTPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAINNIIT-----DNKKGLR--- 200
Query: 164 PPRAPSLVLC--PNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDV 216
VLC P L Q+ L+ + G + VA+ GG Q + V
Sbjct: 201 -------VLCISPTRELALQIYDNLTMLTKNCG---LTCVAIYGGVPKDQQIKAVKTASV 250
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
+V+TP L++ ++ + + Y+V DEAD +L F+ + +I
Sbjct: 251 VVATPGRLVDLLNDGAVD----LSTIDYLVLDEADRMLEKGFEEDIKNII 296
>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
gi|75326432|sp|Q75HJ0.1|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
Full=OsPL10a
gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
Japonica Group]
gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
Length = 637
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T A+ L T G H D + +ER L +F+ + V TD AAR
Sbjct: 436 TLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAAR 495
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+DIP+V+HVI D D++HR+GRT RAG+ GL T+ + E N L
Sbjct: 496 GLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSL 544
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ VQ ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 175 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 234
Query: 145 KLCTALGDSENSNSDKEPTPPRAP------SLVLCPNVVLCEQVVRMANALSADNGEPLV 198
+ S + P PR +L+L P L Q+ A + G V
Sbjct: 235 GIM----------SSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTG---V 281
Query: 199 RAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250
R V GG PI + +++V+TP L++ ++ R R+ ++ VKY+ DEA
Sbjct: 282 RVVVAYGGA--PIHQQLRELERGVEILVATPGRLMDLLE---RARVS-LQMVKYLALDEA 335
Query: 251 DMLLCGSFQNQVIRLINMF 269
D +L F+ Q+ +++
Sbjct: 336 DRMLDMGFEPQIRKIVEQM 354
>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
Length = 613
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 420 FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFV 478
GA RT++F T V +T+ L+ +G+ H + +R + L +F+E V V
Sbjct: 316 IGAREGRTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVLV 375
Query: 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
TD AARGI + N+S V+ D A D+LHR GRTARAG G+V +L T R T+
Sbjct: 376 ATDVAARGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQR---RTV 432
Query: 539 RR 540
RR
Sbjct: 433 RR 434
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 42/257 (16%)
Query: 31 CLSNSAPSSFYPLRVR--FLRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNV---- 84
CL +P VR F+ + G+ R A + DD V
Sbjct: 20 CLRAGSPGLLATCHVREAFVTITYDSGQSARSRAGRPERKPRHRPAGGDVLHDDTVETPA 79
Query: 85 --TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
T+ LGL + L+RAL +G P +Q+A++ L+G+DV+ A+TGSGKT ++ + +
Sbjct: 80 VKTFAQLGLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAI 139
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ +L P PRA LVL P L QV AD+ PL +++
Sbjct: 140 LARL---------DGGKARPKRPRA--LVLVPTRELAMQV--------ADSLTPLAKSLG 180
Query: 203 V-C---------GGQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+ C G Q + + D++++TP L +++ R+ + ++ DEAD
Sbjct: 181 LWCRTAVGGMSFGRQAESLARGVDLLIATPGRLSDHV----RQGTASLGDCNFIALDEAD 236
Query: 252 MLLCGSFQNQVIRLINM 268
+ F QV ++++
Sbjct: 237 QMADMGFMPQVREIMDL 253
>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
Length = 600
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
VT + + + L++ + +E T+VF T + +IL + H D S
Sbjct: 379 VTPEEKQNTLLDLIST-VEVSRRQGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQ 437
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
E+R L +F+ K V V TD AARG+DIP+V+HVI D D++HR+GRT RAG
Sbjct: 438 EQREMALRSFKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGH 497
Query: 520 YGLVTSLYTESNRDLVDTI 538
GL T+ +T+S+ L ++
Sbjct: 498 KGLATAFFTDSDAPLARSL 516
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ L L ++ ++ F +P+ VQ S+ L+G+D++ A+TGSGKT ++ P+I
Sbjct: 145 SFEDLQLPACMMENIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIA 204
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + ++ P +LVL P L Q+ A + G +R V +
Sbjct: 205 SMLMKGYQPAAGRNSRKALP---GALVLAPTRELTSQIYDEARKFTYMTG---LRPVVIY 258
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG P D++V+TP L + I+ R R+ + + ++ DEAD +L F
Sbjct: 259 GGAPAPNQLRDLERGCDILVATPGRLSDFIE---RGRVG-LSSIVFLCLDEADRMLDMGF 314
Query: 259 QNQVIRLI 266
+ Q+ R++
Sbjct: 315 EPQIRRIV 322
>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
Length = 405
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 34/223 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ S+GL D L+R + GF +PS +Q S+ P++ G+DV+ A++G+GKT ++ + +++
Sbjct: 33 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 92
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVAV 203
L T L +++ L+L P L Q+ ++ AL G+ + V+ A
Sbjct: 93 TLDTTLRETQ--------------VLILSPTRELATQIQKVILAL----GDFMNVQCHAC 134
Query: 204 CGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG G I K D V+ TP + + I RRR+ R +K +V DEAD +L
Sbjct: 135 IGGTNLGEDIRKLDYGQHVVSGTPGRVFDMI----RRRVLRTRSIKMLVLDEADEMLNKG 190
Query: 258 FQNQVIRLINMFRF--DEKQLSRMNESGVEKPLEMDNSSLTQP 298
F+ Q+ +++R+ Q+ ++ + + LEM + +T P
Sbjct: 191 FKEQI---YDVYRYLPPATQVVLISATLPHEILEMTSKFMTDP 230
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAA 483
++ ++F NT V +T+ ++ A H D+ +ER + F+ + V + TD
Sbjct: 272 TQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVW 331
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
ARGID+ VS VI D + ++HR+GR+ R G+ G+
Sbjct: 332 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 370
>gi|356516407|ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 530
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 31/190 (16%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI--------EVTV 403
QY+FV ATLP K L ++FPD + I G +H + RL+E + E T
Sbjct: 313 QYLFVTATLP----KNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTP 368
Query: 404 DT----QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYC-----Y 454
DT + AL++ V+E + RT+VF N ++ V +LK + C +
Sbjct: 369 DTAFLNKKTALLQLVEE-----SPVPRTIVFCNKIETCRKVENLLKRFDRKGNCVQVLPF 423
Query: 455 HKDLSLEERAKTLVNFQE---KG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH 509
H ++ E R ++ F KG VCTD A+RGID V HVI DF +++
Sbjct: 424 HAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFARVDHVILFDFPRDPSEYVR 483
Query: 510 RVGRTARAGQ 519
RVGRTAR +
Sbjct: 484 RVGRTARGAK 493
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 71 KNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAET 130
K+ S FF+ ++K +G S+ +I +L+ F RPS VQA + PV+SGK VIA ++
Sbjct: 113 KSVSDTKFFSLK--SFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQS 170
Query: 131 GSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190
GSGKT +YL P+I++L + S S + PR LVL P L QV+ +LS
Sbjct: 171 GSGKTFAYLAPIIQRLRQQELEGIISKSSSQAPSPRV--LVLAPTAELASQVLDNCRSLS 228
Query: 191 ADNGEPLVRAVAVCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFV 239
+G P +++ V GG QG DV+++TP L I+ + +
Sbjct: 229 -KSGVPF-KSMVVTGGFRQKTQLENLQQGV-----DVLIATPGRFLFLIN----QGFLHL 277
Query: 240 RGVKYVVFDEADMLLCGS-FQNQVIRLINMFRFDEKQL 276
++ V DE D+L F+ + LIN D + L
Sbjct: 278 TNLRCAVLDEVDILFGDEDFEVALQSLINSSPVDTQYL 315
>gi|384222064|ref|YP_005613230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
gi|354960963|dbj|BAL13642.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
Length = 522
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R+ ++
Sbjct: 169 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTAERINQRI 224
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ +R +VF T V K L+ AGI H +
Sbjct: 225 IQVDFSAKPAFLTKLLKDE-----PVNRALVFTRTKHGADKVVKTLEKAGIAASAIHGNK 279
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ +SHVI D ++HR+GRTAR
Sbjct: 280 SQNHRERTLAQFRS-GEIRTLVATDIAARGIDVDGISHVINFDLPNVPETYVHRIGRTAR 338
Query: 517 AGQYGLVTSL 526
AG G SL
Sbjct: 339 AGADGTAISL 348
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ GL++ + RAL + P+ +QA ++ L+G+DVV A+TG+GKT S+ +P++
Sbjct: 2 TSFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPIL 61
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L EN +P P LVL P L Q++ NA +R +
Sbjct: 62 HRLL------ENR---IKPQPKTCRVLVLSPTRELSGQILDSFNAYGRH-----IRLSST 107
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G P+G+ DV+V+TP LL+ + + + V+++V DEAD +L
Sbjct: 108 LAIGGVPMGRQVRALMPGLDVLVATPGRLLDLVQSNGLK----LGSVEFLVLDEADRMLD 163
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F N + +++ + L
Sbjct: 164 MGFINDIRKIVAKLPIKRQTL 184
>gi|260941746|ref|XP_002615039.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
gi|238851462|gb|EEQ40926.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
Length = 533
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ ++FA V +L+ +G + H DLS ++R L F+ + + + TD AA
Sbjct: 370 KVLIFALYKKEASRVEGLLQRSGFKVAAIHGDLSQQQRTHALGQFKSGESNLLLATDVAA 429
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
RG+DIPNV VI F +A D++HR+GRT RAGQ G+ +L+TE + L
Sbjct: 430 RGLDIPNVKVVINLTFPLTAEDYVHRIGRTGRAGQTGIAHTLFTEHEKHL 479
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 25/170 (14%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
S F +P+ +QA S +LS KDV+ AETGSGKT ++ VP + + E K
Sbjct: 139 SKFPKPTPIQAVSWPYLLSQKDVIGVAETGSGKTFAFGVPAVNNIL-----KEKKQGLK- 192
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKPDV 216
L L P L Q+ L+ G + VAV GG Q + +
Sbjct: 193 -------VLCLSPTRELALQIYDNLELLTKATG---ISCVAVYGGVSKMDQIEKLKTASI 242
Query: 217 IVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+TP L++ ++ + + V Y+V DEAD +L F+ + ++I
Sbjct: 243 AVATPGRLVDLLEDG----LVDLSSVDYLVLDEADRMLDKGFEEHIKQII 288
>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
Length = 776
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 16/210 (7%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNP-RLKE 396
R++ + + +Q + +AT P +K A L+ Q+ + +S N HN ++ +
Sbjct: 296 RKIIEQIRPDRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSAN----HNILQIVD 351
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
E +T+++ L++ + E GA + ++F T V ++T+ ++ G C H
Sbjct: 352 VCQEHEKETKLNNLLQEIGNNGEPGA---KIIIFVETKKKVESITRTIRRYGWPAVCMHG 408
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D S +ER L F+ K + + TD AARG+D+ + +VI D+ S+ D++HR+GRT
Sbjct: 409 DKSQQERDFVLREFRNGKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTG 468
Query: 516 RAGQYGLVTSLYTESN----RDLVDTIRRA 541
R+ G + +T SN +DLV ++ A
Sbjct: 469 RSDTTGTSYAFFTPSNFRQAKDLVSVLKEA 498
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 32/195 (16%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D + ++ G+ P+ +QA +SGKD+V A+TGSGKT +Y++P I +
Sbjct: 136 DYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPAIVHI------ 189
Query: 153 SENSNSDKEPTPPRAP---SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW 209
+ +P+ R +LVL P L +Q+ ++A+ + + VR + GG
Sbjct: 190 ------NNQPSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSS---YVRNTCIFGGA-- 238
Query: 210 PIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
P G ++ ++TP L++ ++ + ++ Y+V DEAD +L F+ Q
Sbjct: 239 PKGPQARDLERGVEICIATPGRLIDFLE----KGTTNLQRCTYLVLDEADRMLDMGFEPQ 294
Query: 262 VIRLINMFRFDEKQL 276
+ ++I R D + L
Sbjct: 295 IRKIIEQIRPDRQTL 309
>gi|407921692|gb|EKG14832.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 680
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
T T++F T +++ L G H D + ER K L F+ + + V T
Sbjct: 452 TGLTLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATAV 511
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTI 538
AARG+DIPNV+HV+ D T D++HR+GRT RAG G+ T+ + N RDL++ +
Sbjct: 512 AARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRGNRGVVRDLIELL 571
Query: 539 RRA 541
+ A
Sbjct: 572 KEA 574
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK----- 145
L D LI + +G+ P+ VQ S+ V+ G+D++ A+TGSGKT +L P++ +
Sbjct: 198 LDDHLINNINMAGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKTG 257
Query: 146 ---LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ G + ++ P SL+L P L Q+ A + + VR
Sbjct: 258 PSPIPQQPGGNFGYGRSRKAYP---TSLILAPTRELVSQIFDEARKFAYRS---WVRPCV 311
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG IG D++V+TP L +D R R+ ++ +KY+V DEAD +L
Sbjct: 312 VYGGAD--IGSQLRQIERGCDLLVATPGRL---VDLMERGRIS-LQNIKYLVLDEADRML 365
Query: 255 CGSFQNQVIRLI 266
F+ Q+ R++
Sbjct: 366 DMGFEPQIRRIV 377
>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
Length = 639
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T A+ L G H D + +ER L +F+ + V TD AAR
Sbjct: 432 TLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAAR 491
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+DIP+V+HVI D D++HR+GRT RAG+ GL T+ + ESN L
Sbjct: 492 GLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPL 540
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 37/198 (18%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ VQ ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 171 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 230
Query: 145 KLCTALGDSENSNSDKEPTPPRAP--------SLVLCPNVVLCEQVVRMANALSADNGEP 196
+ + PPR+ +L+L P L Q+ A + G
Sbjct: 231 GIM------------RSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTG-- 276
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
V+ V GG PI + +++V+TP L++ ++ R R+ ++ +KY+ D
Sbjct: 277 -VKVVVAYGGA--PITQQLRELERGVEILVATPGRLMDLLE---RARVS-LQMIKYLALD 329
Query: 249 EADMLLCGSFQNQVIRLI 266
EAD +L F+ Q+ +++
Sbjct: 330 EADRMLDMGFEPQIRKIV 347
>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 585
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 34/188 (18%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGLSD++++AL++ G+ PS +QAA++ +LSG+DV+ A+TG+GKT ++ +P++
Sbjct: 18 TFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPIL- 76
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVRA 200
SN D P+A LVL P + +CE R A+ + V
Sbjct: 77 -----------SNLDVAQKTPQA--LVLAPTRELALQVCEAFERYASGMRG------VHV 117
Query: 201 VAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ V GGQG+ + V+V TP +++++D + ++ + +K++V DEAD +L
Sbjct: 118 LPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLD---KGTLDLSQ-LKFLVLDEADEML 173
Query: 255 CGSFQNQV 262
F V
Sbjct: 174 KMGFAEDV 181
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 14/213 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + +SKQ +AT+P ++ +G L+ D + I+ + ++
Sbjct: 179 EDVETILADTPKSKQIALFSATMPAQIRRISGKYLQ----DPEEITVKNKTTTSANTTQR 234
Query: 398 WIEVTVDTQVDALIEAVK-ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
++ V+ +VDAL ++ E E +VF T + + + L+ G
Sbjct: 235 YLMVSYPQKVDALTRILETENFEG------MIVFVRTKNETETLAEKLRARGYAAAAISG 288
Query: 457 DLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ +R +T+ + K + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 289 DVAQAQRERTVEQLKNGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTG 348
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
RAG+ G S T R L+ I +A + QP+
Sbjct: 349 RAGRSGAAISFVTPRERRLLTAIEKATR--QPL 379
>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
gi|75325411|sp|Q6Z4K6.1|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
Full=OsPL10b
gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
Length = 638
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T A+ L G H D + +ER L +F+ + V TD AAR
Sbjct: 431 TLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAAR 490
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534
G+DIP+V+HVI D D++HR+GRT RAG+ GL T+ + ESN L
Sbjct: 491 GLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPL 539
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 37/198 (18%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ VQ ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 170 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 229
Query: 145 KLCTALGDSENSNSDKEPTPPRAP--------SLVLCPNVVLCEQVVRMANALSADNGEP 196
+ + PPR+ +L+L P L Q+ A + G
Sbjct: 230 GIM------------RSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTG-- 275
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
V+ V GG PI + +++V+TP L++ ++ R R+ ++ +KY+ D
Sbjct: 276 -VKVVVAYGGA--PITQQLRELERGVEILVATPGRLMDLLE---RARVS-LQMIKYLALD 328
Query: 249 EADMLLCGSFQNQVIRLI 266
EAD +L F+ Q+ +++
Sbjct: 329 EADRMLDMGFEPQIRKIV 346
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 10/194 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT+P N +K A L++ + +S H P + + +IEV + DAL
Sbjct: 176 RQTMLFSATMPPNIQKLANQFLRE----PEHVSVMPKHVSAPLIDQAYIEVPERVKFDAL 231
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
RL +VF T V +++ L+ G H DLS +R + F
Sbjct: 232 -----SRLLDMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDTVMRKF 286
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ V V TD AARG+D+ V+HVI D ++HR+GRT RAG+ G S T
Sbjct: 287 RDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTP 346
Query: 530 SNRDLVDTIRRAAK 543
D + I R +
Sbjct: 347 REIDHLHFIERVTR 360
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 31/192 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ GL ++++A+ GF + +Q ++ ++G+D++ A+TG+GKT ++ +PLI
Sbjct: 3 TFAEFGLEPKVLQAITELGFEESTPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ +PT R +L++ P L QV L+ G VR++ +
Sbjct: 63 KI--------------DPTEERVKALIMTPTRELAIQVADEIGKLTRFKG---VRSLPIY 105
Query: 205 GGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ IG+ P +I+ TP LL++I+ K R + V VV DEAD +L
Sbjct: 106 GGQD--IGRQIRALKKHPQIIIGTPGRLLDHINRKTIR----LDDVATVVLDEADEMLDM 159
Query: 257 SFQNQVIRLINM 268
F + ++++
Sbjct: 160 GFMEDITSILSL 171
>gi|401625757|gb|EJS43750.1| dbp3p [Saccharomyces arboricola H-6]
Length = 517
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+E +K+ + + ++FA V + LK G H DLS ++R + L
Sbjct: 339 LLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYSVAAIHGDLSQQQRTQALNE 398
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + + TD AARG+DIPNV VI F + D++HR+GRT RAGQ G +L+T
Sbjct: 399 FKSGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFT 458
Query: 529 ESNRDL 534
E + L
Sbjct: 459 EQEKHL 464
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 24/172 (13%)
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
E S F +P+ +QA + +LSGKDVV AETGSGKT ++ VP I L L D +
Sbjct: 122 EISKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHL---LDDQKKRGIQ 178
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGKP 214
LV+ P L Q+ L+ G + V GG Q + K
Sbjct: 179 ---------VLVISPTRELASQIYDNLIILTNKVG---MECCCVYGGVPKDEQRNQLRKS 226
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
V+V+TP LL D + ++ + V Y+V DEAD +L F+ + +I
Sbjct: 227 QVVVATPGRLL---DLLQEGSVDLSQ-VNYLVLDEADRMLEKGFEEDIKNII 274
>gi|379710610|ref|YP_005265815.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374848109|emb|CCF65181.1| ATP-dependent RNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 591
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 34/192 (17%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LG+ DR++RA+ + G+ PS +QAA++ P+L+G DVV A+TG+GKT ++ +P++
Sbjct: 20 TFADLGIDDRILRAIADVGYESPSPIQAATIPPLLAGADVVGLAQTGTGKTAAFAIPILM 79
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV----RMANALSADNGEPLVRA 200
L EPT +LVL P L QV R A + P +
Sbjct: 80 GL--------------EPTGKAPRALVLAPTRELAIQVAEAFGRYATHI------PGLHV 119
Query: 201 VAVCGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ + GGQ + + V+V TP ++++++ + ++ + ++Y+V DEAD +L
Sbjct: 120 LPIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLE---KGTLDLSQ-LQYLVLDEADEML 175
Query: 255 CGSFQNQVIRLI 266
FQ V R++
Sbjct: 176 KMGFQEDVERIL 187
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396
++D R+ + KQ +AT+P +K + KQ D I+ N + +
Sbjct: 180 QEDVERILADTPADKQVALFSATMPAAIRK----ISKQYLHDPVEITVKAKTSTNTNITQ 235
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W++V+ ++DAL + E F A ++F T A + + L+ G +
Sbjct: 236 RWVQVSHQRKLDALTR-ILEVESFEA----MIIFVRTKQATEELAEKLRARGFSAAAING 290
Query: 457 DLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D++ +R +T+ Q K G + V TD AARG+D+ +SHV+ D ++HR+GR
Sbjct: 291 DIAQAQRERTI--GQLKAGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGR 348
Query: 514 TARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
T RAG+ G R L+ I RA +
Sbjct: 349 TGRAGRSGEALLFVAPRERHLLKAIERATR 378
>gi|365880479|ref|ZP_09419846.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
gi|365291464|emb|CCD92377.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
Length = 481
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R+ ++
Sbjct: 169 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTVERIAQRV 224
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ +R +VF T V K L+ AGI H +
Sbjct: 225 IQVDHSAKPSLLAQLLKDE-----PVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNK 279
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ VSHV+ D ++HR+GRTAR
Sbjct: 280 SQNHRERTLAAFRT-GEIRTLVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTAR 338
Query: 517 AGQYGLVTSLYTESN 531
AG G+ SL S+
Sbjct: 339 AGADGVAISLVAGSD 353
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 32/204 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ L+D L RAL+ + P+ +QA ++ L G+DV+ A+TG+GKT S+ +P++
Sbjct: 2 TSFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPIL 61
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADN 193
+L EN +P P A LVL P L Q+ +R+++ L A
Sbjct: 62 HRLL------ENR---IKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSTL-AIG 111
Query: 194 GEPLVRAV-AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
G P+ R V AV G +V+V+TP LL+ + + + V+++V DEAD
Sbjct: 112 GVPMGRQVRAVMPGV-------EVLVATPGRLLDLVQGNALK----LSHVEFLVLDEADR 160
Query: 253 LLCGSFQNQVIRLINMFRFDEKQL 276
+L F N + +++ + L
Sbjct: 161 MLDMGFINDIRKIVAKLPIKRQTL 184
>gi|308160101|gb|EFO62607.1| DEAD box RNA helicase Vasa [Giardia lamblia P15]
Length = 663
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTV-DAVYAVTKILKTAGIECYCYHKDLSL 460
+VD ++D LI +K + T++F T D Y VTK+L G++ H DL
Sbjct: 431 SVDKRIDKLIHILKSPGSIPTASFLTLIFVETKKDIGYIVTKLL-NGGLKVCEMHGDLEQ 489
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
ER L +F++ K V V TD A RGIDI + HVI DF ++HR+GRT RAG
Sbjct: 490 RERQNNLKSFKDGKTPVLVATDVAQRGIDIGAIRHVINFDFPKDIDTYIHRIGRTGRAGA 549
Query: 520 YGLVTSL 526
GL TS
Sbjct: 550 EGLATSF 556
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 70 DKNGSSDTFFAD-DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
+K D F D + T + LG LIR +E + +P+ +Q ++ VLS D++ +
Sbjct: 166 NKGNFKDLEFKDFSSETLQKLGFPRDLIRNVEKLRYTQPTPIQENAIPLVLSSMDLLATS 225
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDK--EPTPPRAPSLVLCPNVVLCEQVVRMA 186
+TGSGKT S+L P+I +L T+ S DK E + +++L P L +Q+ M
Sbjct: 226 QTGSGKTFSFLSPIIAQLITSRAKDAISEDDKNMEQSMSFPLAVILSPTRELTQQIAFMC 285
Query: 187 NALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRMEFVR 240
L+ + +VR V GG+G + D++++TP L + ++ R+ ++
Sbjct: 286 YQLTFKT-DLIVR--LVYGGEGAREQRGLLKKGCDIVIATPGRLKDFLE----RKCLSLK 338
Query: 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272
V+ +V DEAD +L F+ Q+ L+ ++FD
Sbjct: 339 YVRVMVLDEADKMLDMGFEPQIRDLV--YKFD 368
>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 594
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q+ F +AT+P K + L + P+ +S N L R+K+ + V +VD
Sbjct: 193 RQFAFFSATMPKEIVKLSEKFLVE--PERITLSRNNLTV--SRIKQIYYTVESRDKVDLT 248
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
I+ ++ +TS TM+F NT V +T L AG H D+ E R+ + F
Sbjct: 249 IQLLQLH-----KTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRF 303
Query: 471 QEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
+ KG V + TD AARGID+ ++ VI D ++HR+GRT RAG+ GL +L +
Sbjct: 304 K-KGMVSVLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVS 362
Query: 529 ESNRDLVDTIRR 540
R + I R
Sbjct: 363 RRQRYAIKQIER 374
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K L L + ++RA+ G+ P+ +Q+ ++ +L D++ ++TG+GKT ++ +P++
Sbjct: 17 MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
T GD + +N SL+LCP LC QV + S + V V
Sbjct: 77 S--LTQPGDKKRTN-----------SLILCPTRELCMQVAEEMRSFS--KYKQGVNIACV 121
Query: 204 CGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG PI K D++V+TP L+++I RR+ + +++V DEAD +L
Sbjct: 122 YGGS--PIDKQIRDLKRGADIVVATPGRLMDHI----RRKTIRLDDCRHIVLDEADEMLN 175
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
F + + + F +E+Q + + + ++ +++ L +P+
Sbjct: 176 MGFIEDIEEIFS-FLPEERQFAFFSATMPKEIVKLSEKFLVEPE 218
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 29/191 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ ++L A E G+ P+ +Q S+ L G+D++ AETGSGKT ++ +P+++
Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQ 108
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P LVL P L Q+ + +L A G VR+ +
Sbjct: 109 ALM------------EKPQP--FFGLVLAPTRELAYQISKSFESLGASMG---VRSCVIV 151
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL---C 255
GG Q +G KP +IV+TP LL++++ + + R +KY+V DEAD LL
Sbjct: 152 GGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSL---RNLKYLVMDEADRLLDMDF 208
Query: 256 GSFQNQVIRLI 266
G +++++++
Sbjct: 209 GPLLDKILKVL 219
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
EF ++ T++F TV+ + +L+ G H LS R L F+ + +
Sbjct: 285 EFAGQS--TIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNIL 342
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
V TD AARG+DIP+V V+ D + ++HRVGRTARAG+ GL S +
Sbjct: 343 VATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQ 394
>gi|336066886|ref|YP_004561744.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296832|dbj|BAK32703.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 584
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q+ F +AT+P K + L + P+ +S N L R+K+ + V +VD
Sbjct: 177 RQFAFFSATMPKEIVKLSEKFLVE--PERITLSRNNLTV--SRIKQIYYTVESRDKVDLT 232
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
I+ ++ +TS TM+F NT V +T L AG H D+ E R+ + F
Sbjct: 233 IQLLQLH-----KTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRF 287
Query: 471 QEKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
+ KG V + TD AARGID+ ++ VI D ++HR+GRT RAG+ GL +L +
Sbjct: 288 K-KGMVSVLIATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVS 346
Query: 529 ESNRDLVDTIRR 540
R + I R
Sbjct: 347 RRQRYAIKQIER 358
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K L L + ++RA+ G+ P+ +Q+ ++ +L D++ ++TG+GKT ++ +P++
Sbjct: 1 MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
T GD + +N SL+LCP LC QV + S + V V
Sbjct: 61 S--LTQPGDKKRTN-----------SLILCPTRELCMQVAEEMRSFS--KYKQGVNIACV 105
Query: 204 CGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG PI K D++V+TP L+++I RR+ + +++V DEAD +L
Sbjct: 106 YGGS--PIDKQIRDLKRGADIVVATPGRLMDHI----RRKTIRLDDCRHIVLDEADEMLN 159
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
F + + + F +E+Q + + + ++ +++ L +P+
Sbjct: 160 MGFIEDIEEIFS-FLPEERQFAFFSATMPKEIVKLSEKFLVEPE 202
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 29/191 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ ++L A E G+ P+ +Q S+ L G+D++ AETGSGKT ++ +P+++
Sbjct: 49 TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQ 108
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P LVL P L Q+ + +L A G VR+ +
Sbjct: 109 ALM------------EKPQP--FFGLVLAPTRELAYQISKSFESLGASMG---VRSCVIV 151
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL---C 255
GG Q +G KP +IV+TP LL++++ + + R +KY+V DEAD LL
Sbjct: 152 GGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSL---RNLKYLVMDEADRLLDMDF 208
Query: 256 GSFQNQVIRLI 266
G +++++++
Sbjct: 209 GPLLDKILKVL 219
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVF 477
EF ++ T++F TV+ + +L+ G H LS R L F+ + +
Sbjct: 285 EFAGQS--TIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNIL 342
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
V TD AARG+DIP+V V+ D + ++HRVGRTARAG+ GL S +
Sbjct: 343 VATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQ 394
>gi|353558872|sp|C8V8H4.1|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
nidulans FGSC A4]
Length = 668
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 418 LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGV 476
L T T++F T A+++ L H D + ER + L F+ + +
Sbjct: 440 LHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPI 499
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----R 532
V T AARG+DIPNV+HVI D T D++HR+GRT RAG G+ T+ + N R
Sbjct: 500 LVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVR 559
Query: 533 DLVDTIRRAAK 543
DL+D ++ A +
Sbjct: 560 DLIDLLKEAHQ 570
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D LI + + + P+ VQ S+ V++G+D++ A+TGSGKT +L P++
Sbjct: 187 TFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246
Query: 145 KLCTALGDSENSNSDKE--------PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
+ + ++ + PT SL+L P L Q+ A + +
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPT-----SLILAPTRELVSQIFDEARKFAYRS--- 298
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
VR V GG IG D++V+TP L++ I+ R R+ V +KY++ D
Sbjct: 299 WVRPCVVYGGAD--IGSQLRQIERGCDLLVATPGRLVDLIE---RGRISLVN-IKYLILD 352
Query: 249 EADMLLCGSFQNQVIRLI 266
EAD +L F+ Q+ R++
Sbjct: 353 EADRMLDMGFEPQIRRIV 370
>gi|396484726|ref|XP_003842000.1| hypothetical protein LEMA_P077600.1 [Leptosphaeria maculans JN3]
gi|312218576|emb|CBX98521.1| hypothetical protein LEMA_P077600.1 [Leptosphaeria maculans JN3]
Length = 679
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T++F T +++ L G H D + ER K L F+ + + V T AAR
Sbjct: 455 TLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATAVAAR 514
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
G+DIPNV HV+ D T D++HR+GRT RAG G+ T+ + N RDL+D ++ A
Sbjct: 515 GLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLDLLKEA 574
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 42/198 (21%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L D L+ +E SG+ P+ VQ S+ V+ G+D++ A+TGSGKT +L P++ +
Sbjct: 200 LDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ----- 254
Query: 151 GDSENSNSDKEPTPP--------------RAPSLVLCPNVVLCEQVVRMANALSADNGEP 196
N P+PP SLVL P L Q+ A + +
Sbjct: 255 ------NFVNGPSPPPQSQAGGYGRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRS--- 305
Query: 197 LVRAVAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248
VR V GG IG D++V+TP L++ I+ R R+ +KY+V D
Sbjct: 306 WVRPCVVYGGAD--IGSQLRQIERGCDLLVATPGRLVDLIE---RGRISLA-NIKYLVLD 359
Query: 249 EADMLLCGSFQNQVIRLI 266
EAD +L F+ Q+ R++
Sbjct: 360 EADRMLDMGFEPQIRRIV 377
>gi|255513847|gb|EET90112.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 434
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS-GNYLHFHNPRLKEK 397
D + + ++ R +Q +F +AT+P + ++ + + ++IS G +
Sbjct: 162 DVKDIVRHTGRGRQTMFFSATIP----RELHSLANEFMRNPEFISVGEKEDSIVNTISHT 217
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ EV + + AL+ + E + +T++FA T + L+ AG E H
Sbjct: 218 YCEVGRNEKFSALLAYIDE-----YKPKKTIIFAETKFGAEILASALRNAGYESLLMHGG 272
Query: 458 LSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
LS R TL NF+ + V T+ ARGIDI ++S VI D + +LHRVGR+AR
Sbjct: 273 LSQNRRENTLNNFKTDATMLVTTNVTARGIDIRDISDVINYDCPDNPRVYLHRVGRSARM 332
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKL 544
G G S+ T R+L+ I AK+
Sbjct: 333 GADGRAFSIITHQQRNLISDIEYMAKI 359
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 29/183 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ +G+S RL L G P+ VQ S+ VLSG+D+++ A+TG+GKT+++L+P++EK
Sbjct: 4 FEDIGISKRLASGLSAIGITAPTDVQRESIPKVLSGRDIIVRAKTGTGKTYAFLLPIMEK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ + D E +L+L P L Q+ L + +RAV G
Sbjct: 64 I--------SRGRDIE-------ALILAPTRELAVQIFESGYKLRDNE----IRAVVAYG 104
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q I + ++++ TP +L+ I R + + VKY+V DEAD++L F
Sbjct: 105 GVSINMQMQKISRGCNILIGTPGRILDLIS----RGVLDLEKVKYLVLDEADIMLDMGFI 160
Query: 260 NQV 262
+ V
Sbjct: 161 DDV 163
>gi|402773718|ref|YP_006593255.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401775738|emb|CCJ08604.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 514
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D RV K ++Q +F +AT+P P+ ++ +LH NP R +
Sbjct: 166 DIERVCKLVPFTRQTLFFSATMP---------------PEITRLTEAFLH--NPIRCEVS 208
Query: 398 WIEVTVDTQVDALI---------EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448
T T AL+ E ++ + ++F N V + + L G
Sbjct: 209 RAATTATTIRQALVASRGHADKRETLRTLIREAENFKNAIIFCNRKRDVATLHRSLVKHG 268
Query: 449 IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H D+ R +L F+ + VC+D AARG+DIP+VSHV+ D T + D+
Sbjct: 269 FSAGALHGDMDQLARMASLDAFKTGDVSLIVCSDVAARGLDIPDVSHVLNFDVPTHSEDY 328
Query: 508 LHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
+HR+GRT RAG+ G+ +L TE + +D I+
Sbjct: 329 VHRIGRTGRAGRSGVAITLVTEDDMKYIDQIQ 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 28/223 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++ LGLS +++ A++ SG+ P+ +QA ++ P L G+D++ A+TG+GKT ++ +P++
Sbjct: 1 MTFEELGLSQKVLAAVQTSGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPML 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD---NGEPLVRA 200
+L + + PR +L+L P L QV + N L+
Sbjct: 61 SRLESGRARARM---------PR--TLILEPTRELAAQVEASFAKYGKNHRLNVALLIGG 109
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
VA + + DV+++TP LL+ D R + G++ +V DEAD +L F
Sbjct: 110 VAFGEQETKIMRGADVLIATPGRLLDFFD----RGKLLLTGIEILVIDEADRMLDMGFIP 165
Query: 261 QVIRLINMFRFDEK----------QLSRMNESGVEKPLEMDNS 293
+ R+ + F + +++R+ E+ + P+ + S
Sbjct: 166 DIERVCKLVPFTRQTLFFSATMPPEITRLTEAFLHNPIRCEVS 208
>gi|327349068|gb|EGE77925.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ATCC
18188]
Length = 607
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++L L RL++AL F +P+++QA ++ L GKDV+ A+TGSGKT +YL+P+++
Sbjct: 25 SFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-----LVR 199
+ +PT +L+L P L EQV + + SA G+ L +
Sbjct: 85 SIL--------QKKTNDPTHKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQ 136
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + PD+++STPA + NI+ ++ + ++V DEAD++L ++
Sbjct: 137 KVSDAVQRSILADLPDIVISTPARAVVNINSS----ALTLQHLTHLVIDEADLVLSYGYE 192
Query: 260 NQVIRL 265
+ L
Sbjct: 193 EDMQSL 198
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID +V+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 379 SRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQ 427
>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|392553886|ref|ZP_10301023.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 415
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 30/298 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ SL L L+ A+E + + P+ +Q ++ P+L+GKDV+ +A+TG+GKT ++++PL+
Sbjct: 5 SFSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLH 64
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN--ALSADNGEPLVRAVA 202
KL N+ K+ P A ++L P L +QV A D L A
Sbjct: 65 KLL---------NTTKKDEPGIARVVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGA 115
Query: 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
G Q + VIV+TP LL++I + + V +VFDEAD +L F +++
Sbjct: 116 SIGPQIKALKTAQVIVATPGRLLDHI----VKGSVVLSSVDSLVFDEADRMLDMGFIDEI 171
Query: 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS-DEGNFEGDS 321
R++ D + L + + + E+ L P+L + + + ++ + D
Sbjct: 172 RRILRHIPGDRQTLL-FSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDE 230
Query: 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA---------TLPINGKKTAGA 370
D + E S I K+WR+V + R+KQ A T I+G K+ GA
Sbjct: 231 DRK---RELVSHMIGMKNWRQVL-IFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGA 284
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAA 484
+ ++F T + K + G++ H D S R + L NF+E V V TD AA
Sbjct: 248 QVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVAA 307
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DIP + +VI + A D++HR+GRT RAG+ GL SL + + L++ I
Sbjct: 308 RGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEEI 361
>gi|160380700|sp|A6SFW7.2|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
Length = 514
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 399 IEVTVDTQVDALIEAVKE---------RLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
+E++ + ++ ++E V E LE E ++ ++F T +T+ L+
Sbjct: 313 LELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQD 372
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ K + V TD A+RGID+ N++HV D+ ++ D
Sbjct: 373 GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSED 432
Query: 507 FLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
++HR+GRT RAGQ G +L+T N RDLV+ + A ++ P
Sbjct: 433 YIHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDP 477
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 24/197 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 103 TFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 162
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P E V++ ++ +R V
Sbjct: 163 HI----------NAQPLLAPGDGPIVLVLAPT---RELAVQIQQEITKFGKSSRIRNTCV 209
Query: 204 CGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ I+ + +R V Y+V DEAD +L
Sbjct: 210 YGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTN----LRRVTYLVLDEADRMLDMG 265
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ +++ R D +
Sbjct: 266 FEPQIRKILGQIRPDRQ 282
>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 421
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 27/200 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ SLGLS L+RA+ + + P+ +QA ++GP L G+D++ +A+TGSGKT ++ +PL+++
Sbjct: 3 FSSLGLSPALLRAISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLLQQ 62
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC- 204
A+ S P R +L+L P L QV L G+ L RA+ V
Sbjct: 63 FEAAVPQS----------PRRLRALILVPTRELSTQVGEEIRFL----GQHLPRALKVSI 108
Query: 205 --GG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG Q + G D++V+TP LL+ ID + GV +V DEAD LL
Sbjct: 109 VFGGVSINPQMLRLRGGADIVVATPGRLLDLID----HNALSLSGVATLVLDEADRLLDL 164
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F ++ R++ + + L
Sbjct: 165 GFAEELNRILALLPVQRQNL 184
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q +F +AT P + A +L+ D I P ++++ IEV + L
Sbjct: 181 RQNLFFSATFPPAVQTLAQVLLR----DPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQLL 236
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
+ + SR +VF T A V L+ A I +H +LS +R + L +F
Sbjct: 237 RHLMAQH-----HWSRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADF 291
Query: 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ + V V TD AARG+DI + V+ D SA+D++HR+GRT RAG+ G+ S +
Sbjct: 292 KASRLKVVVATDVAARGLDIAQLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVALSFVSA 351
Query: 530 SN 531
+
Sbjct: 352 AT 353
>gi|414591877|tpg|DAA42448.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 643
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
LI A K G + + T+VF T A+ L G H D + +ER L +
Sbjct: 422 LIHAQKANGTHG-KHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRS 480
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V TD AARG+DIP+V+HVI D D++HR+GRT RAG+ GL T+ +
Sbjct: 481 FKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 540
Query: 529 ESN----RDLVDTIRRA 541
ESN R L D ++ A
Sbjct: 541 ESNTTLARPLSDLMKEA 557
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ VQ ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 176 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 235
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + + S S + P +L+L P L Q+ A + G VR V
Sbjct: 236 GILKSPKPHQRSRSTRTACP---LALILSPTRELSVQIHEEARKFAYQTG---VRVVVAY 289
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG PI +++V+TP L++ ++ R R+ ++ +KY+ DEAD +L
Sbjct: 290 GGA--PITNQLRELERGVEILVATPGRLMDLLE---RARVS-LQMIKYLALDEADRMLDM 343
Query: 257 SFQNQVIRLI 266
F+ Q+ +++
Sbjct: 344 GFEPQIRKIV 353
>gi|391329499|ref|XP_003739209.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Metaseiulus
occidentalis]
Length = 717
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 410 LIEAVKER-----LEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERA 464
L+EA R L G+ + T+VF T ++ L G H D S ER
Sbjct: 464 LLEAAGLRCGPDGLAPGSSETLTLVFVETKKGADSLENFLIREGYPVTSIHGDRSQGERE 523
Query: 465 KTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV 523
L +F+ K + V T AARG+DIPNV HVI D T +++HR+GRT R G GL
Sbjct: 524 DALRSFRNGKTPIIVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGNLGLA 583
Query: 524 TSLYTESNRDLV 535
TS + + NR+L
Sbjct: 584 TSFFHDKNRNLA 595
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 30/188 (15%)
Query: 95 LIRA-LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153
L+R +E + + P+ VQ ++ V+S +D++ A+TGSGKT ++L+P I KL
Sbjct: 222 LLRGNIELANYTVPTPVQKYAIPIVMSHRDLMACAQTGSGKTAAFLIPSINKLLV----- 276
Query: 154 ENSNSDKEPTPPRAPS--------LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ +K P P R S L+L P L +Q+ A S + VRA V G
Sbjct: 277 -DGPPEKIPQPQRQSSRSKQYPLALILSPTRELTQQIYDEACKFSYRS---RVRACVVYG 332
Query: 206 GQGWPIGKP-------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G P+ + ++V+TP L + I+ + + ++ VR ++V DEAD +L F
Sbjct: 333 GAD-PMNQMRDLDKGCQLLVATPGRLWDMIE-RGKVALDLVR---FLVLDEADRMLDMGF 387
Query: 259 QNQVIRLI 266
+ Q+ +++
Sbjct: 388 EPQIKKIV 395
>gi|400596455|gb|EJP64229.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 895
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 37/234 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++G++ L++A+ GF P+ +Q ++ VL KDVV A TGSGKT ++++P+IE+
Sbjct: 87 FQAMGINATLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTAAFVIPMIER 146
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L ++S K + +L++ P+ L Q +++ LS G L +AV + G
Sbjct: 147 L--------RAHSAKFGS----RALIMSPSRELAIQTLKVVKELS--KGTDL-KAVLLVG 191
Query: 206 GQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G G+ PD++++TP L+ K +++ + +KYVVFDEAD L F
Sbjct: 192 GDSLEEQFGFMAANPDIVIATPGRFLH---LKVEMKLD-ISSIKYVVFDEADRLFEMGFA 247
Query: 260 NQVIRLINMFRFDEK----------QLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
Q+ +++ + L +G++ P + +D + PDLQ
Sbjct: 248 AQLTEILHALPLSRQTLLFSATLPTSLVEFARAGLQDPSLVRLDADTKVSPDLQ 301
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T V + +L+ AG + L R + +F+ K + V TD AAR
Sbjct: 359 TIVFTATKHHVEYIANLLQWAGFAVSHVYGSLDQTARRIQVEDFRHGKTNILVVTDVAAR 418
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + F+HRVGRTARAGQ G SL +++
Sbjct: 419 GIDIPVLANVINYDFPSQPKIFVHRVGRTARAGQRGWSYSLVRDTD 464
>gi|389748758|gb|EIM89935.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 452
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F TV ++ IL+T G H LS +R L F+ G + V TD A+RG
Sbjct: 258 MIFTRTVHDAQKLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRSILVATDVASRG 317
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G +L T+ + +L+ I +
Sbjct: 318 LDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDIELIHRIEK 371
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++KS+GL D L+ A+E G+ P+ +QA ++ L G+D++ A TGSGKT ++ +P+I+
Sbjct: 16 SFKSIGLIDPLLEAVEQLGYKTPTDIQAEALPHALEGRDIIGVASTGSGKTAAFALPIIQ 75
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L P + V+ P L Q+ + AL + G VR +
Sbjct: 76 ALWN--------------DPKGLFACVIAPTRELAYQISQQFEALGSGIG---VRCAVII 118
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP +IV+TP L +++ + + RG+K+ V DEAD LL F
Sbjct: 119 GGMDVVSQSIALAKKPHIIVATPGRLNYHLENTKGFSL---RGLKFFVLDEADRLLDMDF 175
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ +++ + E+ + + K ++ +SL P
Sbjct: 176 GPDIDKILKVIP-KERTTYLFSATMTTKVAKLQRASLQNP 214
>gi|448528530|ref|XP_003869731.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis Co 90-125]
gi|380354084|emb|CCG23598.1| Drs1 nucleolar DEAD-box protein [Candida orthopsilosis]
Length = 632
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
N T++ L LS +++++++ F P+ +Q++++ L GKD+V A+TGSGKT +YL+PL
Sbjct: 152 NTTFQELQLSRPILKSIQSLSFTSPTPIQSSTIPIALLGKDIVAGAQTGSGKTAAYLIPL 211
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
IE+L +NS S K +++L P L QV + L + L +A
Sbjct: 212 IERLIF-----KNSTSTK--------AIILAPTRELAIQVYDVGRKL-GQFVKNLSFGLA 257
Query: 203 VCG-----GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCG 256
V G + +PD++++TP L+++I R F V V+ +V DEAD +L
Sbjct: 258 VGGLNLRQQEQQLKSRPDIVIATPGRLIDHI----RNSPSFSVEDVQVLVIDEADRMLEE 313
Query: 257 SFQNQVIRLINMFRFDEKQ 275
FQ ++ ++++ ++Q
Sbjct: 314 GFQEELTEILSLIPKQKRQ 332
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAAR 485
R +VF + + + + IL G++ H L+ E+R + F V VCTD AAR
Sbjct: 398 RIVVFVSRKEMAHKLRVILGLLGLKVAELHGALTQEQRLANMKLFMGDVNVLVCTDLAAR 457
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533
G+DI + +V+ D + +LHRVGRTARAG+ G + ESN+D
Sbjct: 458 GLDI-RIEYVVNFDMPKTYEIYLHRVGRTARAGRKGTSITFVGESNQD 504
>gi|354547955|emb|CCE44690.1| hypothetical protein CPAR2_404940 [Candida parapsilosis]
Length = 647
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T + L G H D S ER K L F+ K + V T AAR
Sbjct: 424 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGKAPILVATAVAAR 483
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV-DTIRRAAKL 544
G+DIPNVSHVI D D++HR+GRT RAG G+ T+ + +N+++ D I A+
Sbjct: 484 GLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIAKDMIDLLAEA 543
Query: 545 GQPV 548
Q V
Sbjct: 544 NQEV 547
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 36/194 (18%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ S F +P+ VQ SV V G+D++ A+TGSGKT +L P++
Sbjct: 171 LDELLVENIKLSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVL------- 223
Query: 151 GDSENSNSDKEPTPPRAPS----------LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
SE+ + P P + LV+ P L Q+ + + VR
Sbjct: 224 --SESYANGPAPVPESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAY---RSWVRP 278
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V GG IG D++V+TP L + ++ R R+ +KY+V DEAD
Sbjct: 279 CVVYGGAD--IGNQIRQLDRGCDLLVATPGRLKDLLE---RGRVSLAN-IKYLVLDEADR 332
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ +++
Sbjct: 333 MLDMGFEPQIRQIV 346
>gi|367041489|ref|XP_003651125.1| hypothetical protein THITE_2111136 [Thielavia terrestris NRRL 8126]
gi|346998386|gb|AEO64789.1| hypothetical protein THITE_2111136 [Thielavia terrestris NRRL 8126]
Length = 639
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N R+++K V + L E ++E + A+ R +VF V + L+ GI
Sbjct: 442 NSRIEQKVEVVDPRGKEQRLAELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLQKRGIR 501
Query: 451 CYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H DL ++R ++L F K G V V TD AARG+DIP V VI F + D+
Sbjct: 502 VASIHGDLRQDQRTRSLEAF--KAGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDY 559
Query: 508 LHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAAKLGQPV 548
+HR+GRT RAG+ G +L+TE ++ L++ +R A QPV
Sbjct: 560 VHRIGRTGRAGKAGKAITLFTEHDKAHSGSLINVLRAA---NQPV 601
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
+ F P+ +QAAS LSG+DV+ AETGSGKT ++ +P +E L ++ ++S DK
Sbjct: 220 ASFTAPTPIQAASWPFSLSGRDVIGIAETGSGKTMAFALPCVESLASS-PKPKHSKKDKT 278
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC--GGQGWPIGK------ 213
A ++V+ P L Q ++L++ LV AVC GG +
Sbjct: 279 AF---ARAVVVSPTRELAMQTHAALSSLAS-----LVGLSAVCLYGGASKDDQRALLRRN 330
Query: 214 --PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
D+IV+TP L + + + V + V DEAD +L F++ I+LI
Sbjct: 331 AGADIIVATPGRLKDFL----AEGCVSLSDVMFAVLDEADRMLDKGFEDD-IKLI 380
>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
BAL199]
gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
BAL199]
Length = 446
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 23/220 (10%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGL++ L+R G+ P+ +Q A++ P+L+G+D++ A+TG+GKT ++ +P++ +
Sbjct: 6 FRSLGLAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLHR 65
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L A + P PRA L+L P L Q+ + G +R V G
Sbjct: 66 LAAA-------GEKRIPKAPRA--LILTPTRELAVQIAGVVETFGRSIG---LRHALVHG 113
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + +V+++TP LL+ I+ +R F+ V+Y V DEAD +L F
Sbjct: 114 GVSARPQAVALQRGVEVMIATPGRLLDLIN----QRAVFLDKVEYFVLDEADRMLDLGFV 169
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299
V R+ + + +Q + + + + +E+ S L P+
Sbjct: 170 RDVKRIAALVPAN-RQTALFSATMPQSIIELTESLLRNPE 208
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGG 475
RL + SR +VF T V V L+ G+ H + S R L F+ +
Sbjct: 240 RLLGAPDVSRAIVFVRTKHGVDRVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLP 299
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+ V TD AARGID+ +SHVI D ++HR+GRTARAG G+ S
Sbjct: 300 ILVATDIAARGIDVHEISHVINLDLPDVPETYIHRIGRTARAGAGGIAVSF 350
>gi|451334917|ref|ZP_21905487.1| ATP-dependent RNA helicase [Amycolatopsis azurea DSM 43854]
gi|449422456|gb|EMD27830.1| ATP-dependent RNA helicase [Amycolatopsis azurea DSM 43854]
Length = 500
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVF 477
E GA RT++F T V +T+ L+ G+ H + +R + L +F+E V
Sbjct: 275 EIGAREGRTIMFVRTKHHVDRLTERLREKGVHAAALHGGKTQGQRNRVLADFKEGYAPVL 334
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
V TD AARGI + ++S V+ D A D+LHR GRTARAG G+V +L T R +V
Sbjct: 335 VATDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTLVTHDQRRMV 392
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 40/212 (18%)
Query: 74 SSDTFFADDNV------TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
+ D +D V TW LGL D L+RAL ++G P +Q+A++ L+G+DV+
Sbjct: 25 AGDAMLREDAVETVKAKTWAELGLPDPLLRALADAGITTPFPIQSATIPDALAGRDVLGR 84
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187
A+TGSGKT ++ + ++ +L + P PRA L+L P L QV
Sbjct: 85 AQTGSGKTLAFGLAMLTRL---------NGGRARPKHPRA--LILVPTRELAMQV----- 128
Query: 188 ALSADNGEPLVRAVAV-----CGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRM 236
AD+ PL +++ + GG + D++++TP L +++ R+
Sbjct: 129 ---ADSLTPLAKSLGLWCRTAVGGMAFTRQADALSRGVDLLIATPGRLSDHV----RQGT 181
Query: 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
+ + +V DEAD + F QV ++++
Sbjct: 182 ASLSDINFVALDEADQMADMGFMPQVREILDL 213
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 10/207 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + K +Q + +AT+P N +K A LK D + +S H P + +
Sbjct: 163 EDIQSILKLVPEERQTLLFSATMPANIQKLASQFLK----DPEHVSVIPKHVSAPLIDQA 218
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+IEV + +AL RL +VF T V + + L+ G H D
Sbjct: 219 YIEVPERQKFEAL-----SRLLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGD 273
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
LS +R + F++ V V TD AARG+D+ V+HV+ D ++HR+GRT R
Sbjct: 274 LSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGR 333
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG+ G S T D + I R +
Sbjct: 334 AGKEGTAWSFVTPREMDHLYFIERVTR 360
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ GL R+++A+ GF + +Q+ S+ L+G+D++ A+TG+GKT ++ +PLI K
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLIHK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ KE R SL++ P L QV LS G +R++A+ G
Sbjct: 64 IA------------KEEE--RIVSLIMTPTRELAIQVAEEIGKLSRFKG---IRSLAIYG 106
Query: 206 GQ--GWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GQ G I KP +I+ TP LL++I+ K R + V+ VV DEAD +L F
Sbjct: 107 GQDIGRQIRALKKKPQIIIGTPGRLLDHINRKTIR----LDDVQTVVLDEADEMLDMGFM 162
Query: 260 NQVIRLINM 268
+ ++ +
Sbjct: 163 EDIQSILKL 171
>gi|308081024|ref|NP_001183303.1| uncharacterized protein LOC100501699 [Zea mays]
gi|238010618|gb|ACR36344.1| unknown [Zea mays]
Length = 643
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
LI A K G + + T+VF T A+ L G H D + +ER L +
Sbjct: 422 LIHAQKANGTHG-KHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRS 480
Query: 470 FQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ + V TD AARG+DIP+V+HVI D D++HR+GRT RAG+ GL T+ +
Sbjct: 481 FKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 540
Query: 529 ESN----RDLVDTIRRA 541
ESN R L D ++ A
Sbjct: 541 ESNTTLARPLSDLMKEA 557
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ +Q ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 176 TFAEIDLGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 235
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + + S S + P +L+L P L Q+ A + G VR V
Sbjct: 236 GILKSPKPHQRSRSTRTACP---LALILSPTRELSVQIHEEARKFAYQTG---VRVVVAY 289
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG PI +++V+TP L++ ++ R R+ ++ +KY+ DEAD +L
Sbjct: 290 GGA--PITNQLRELERGVEILVATPGRLMDLLE---RARVS-LQMIKYLALDEADRMLDM 343
Query: 257 SFQNQVIRLI 266
F+ Q+ +++
Sbjct: 344 GFEPQIRKIV 353
>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
Length = 862
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++S+GLS + + + G+ P+ +Q ++ +L GKDVV A TGSGKT ++LVPL EK
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + + T RA L+L P L Q ++ L G +R + G
Sbjct: 140 L----------KAPQAQTGARA--LILTPTRELALQTMKFTKELGKFTG---LRTALILG 184
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G PD+I+ TP L++ I + ++ V+YVVFDEAD L F
Sbjct: 185 GDSMDDQFAALHENPDIIIGTPGRLMHVIQEMNLK----LQSVEYVVFDEADRLFEMGFA 240
Query: 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL 300
Q+ +I D +Q + + + +E + LT+P L
Sbjct: 241 EQLQEIIRRLP-DARQTLLFSATLPKLIVEFARAGLTEPVL 280
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTDAAA 484
+T+VF T V + ++L G++C C + L R ++ F K + + TD AA
Sbjct: 322 QTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLVTDVAA 381
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
RGIDIP + +VI +F FLHRVGR ARAG+ G SL
Sbjct: 382 RGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSL 423
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++
Sbjct: 96 SFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 155
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L D +P PRA +VLCP L EQV R+A ++S R+ V
Sbjct: 156 LLRR---DEAMLGMSMKPRRPRA--VVLCPTRELTEQVYRVAKSISHHA---RFRSTMVS 207
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG-VKYVVFDEADMLLCGS 257
GG Q + P D++V TP +L++I + V G +KY+V DEAD +
Sbjct: 208 GGTRLRPQEDSLNMPVDMVVGTPGRILDHI-----KDGNMVYGDIKYLVLDEADTMFDQG 262
Query: 258 FQNQVIRLI 266
F + + +
Sbjct: 263 FGPDIRKFL 271
>gi|334138519|ref|ZP_08511937.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
gi|333603930|gb|EGL15326.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
sp. HGF7]
Length = 388
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 10/208 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
K+ + K QRS Q +F +AT+P G + + D I N L+
Sbjct: 165 KEVYSIFKALQRSSQSLFFSATIPAE----IGQAAENLMNDPAEIRINPDQRTASTLEHL 220
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
++D L R+ E + MVF N V V L+ G+ + +
Sbjct: 221 AFNCEARNKIDTL-----RRIIRLYEPPKAMVFVNATADVSEVVSKLQHLGLSVEALYGE 275
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
++RA + +F+E K + + TD AARG+DI V+HVI D +A +LHR GRT R
Sbjct: 276 AGKQQRANVMQSFREGKFQLLLATDVAARGLDIEEVTHVINLDMPLNAEYYLHRAGRTGR 335
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAKL 544
G+ G V S+ R ++D R+A ++
Sbjct: 336 MGRSGTVISIVAPKERFIIDKFRKALRI 363
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 29/169 (17%)
Query: 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158
L+ G GRP+ VQA ++ +L+G+D ++ ++TG+GKT ++L+P ++++
Sbjct: 18 LKERGIGRPTAVQAEAIPLILTGRDAIVQSQTGTGKTLAFLLPALQRI------------ 65
Query: 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-------QGWPI 211
+ + ++ P L Q++R+A L D ++ A+ GG +
Sbjct: 66 --DVNAKHVQAAIIVPTRELGMQILRVAEDLIGDGP---IKCQALIGGAALARQVEKLKK 120
Query: 212 GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL-CGSFQ 259
G P +I+ TP I+ + R V V ++ DE D +L GS +
Sbjct: 121 GSPHLIIGTPG----RINELIKARKLNVHHVSTLIVDEVDHVLELGSMK 165
>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
Length = 416
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+T R +VF T + + + L+TA I C ++ E R + F++ K V + TD
Sbjct: 245 QTERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVLIATD 304
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541
AARGID+P+VSHVI D +A +LHR+GRTARAG+ G SL ++ +++ + R
Sbjct: 305 VAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMERVGRY 364
Query: 542 AK 543
K
Sbjct: 365 VK 366
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L LS L+RALE G+ RP+ VQA ++ L GKD++ +A TG+GK+ ++L+P ++
Sbjct: 4 TFADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLPALQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L + ++P P R L+L P L QV A L+ + +
Sbjct: 64 HL--------DDFPRRDPGPARV--LILTPTRELAIQVADEARELAKYTHH---KVFTIT 110
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG + D++V+TP L+ I+ +R F R ++ ++ DEAD +L
Sbjct: 111 GGISYQEHADILARTQDIVVATPGRLMEYIEAER-----FDCRAIETLILDEADRMLDMG 165
Query: 258 FQNQVIRL 265
F V RL
Sbjct: 166 FGPVVDRL 173
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
+T+ LGL+ L+RA+ + G+ +P+ +QA ++ V+SGKD++ A+TG+GKT ++ +P+
Sbjct: 22 EITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPI 81
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
++++ S P+P + P +L+L P L QV S +RA
Sbjct: 82 LQRILPFASSS--------PSPAKHPVRALILAPTRELAMQVFESVKTYSKHTP---IRA 130
Query: 201 VAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + K +++V+TP LL++++ K + F V+ +V DEAD +L
Sbjct: 131 MCAYGGVDIRPQIAELKKGVEILVATPGRLLDHVENK---SVSF-NSVQALVLDEADRML 186
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F V R++NM + L
Sbjct: 187 DMGFVPDVTRILNMLPAQRQSL 208
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 398 WIEVTVDTQV-DALIEAVKERLEFG-----------AETSRTMVFANTVDAVYAVTKILK 445
IEV QV D + V E+G E + +VF T +T+ L+
Sbjct: 231 LIEVARRNQVSDTITHRVHPVSEYGKRGLLTKLLKSGEIRQCIVFCRTKQGCSRLTRELQ 290
Query: 446 TAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFAT 502
AGI+ H D S ER K L F KGG + TD AARG+D+ ++ +VI +
Sbjct: 291 RAGIKADAIHGDKSQLERIKALEAF--KGGETDALIATDVAARGLDVDDLPYVINYELPH 348
Query: 503 SAVDFLHRVGRTARAGQYGLVTSLYT 528
+ D++HR+GRT RAG+ G SL +
Sbjct: 349 TPEDYVHRIGRTGRAGKKGNAISLVS 374
>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 557
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
R +VF+ T V K L AGI H + S +R + L F++ V V TD AA
Sbjct: 252 RALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAA 311
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RGID+P VSHVI D ++HR+GRTARAG+ G+ S R + I R KL
Sbjct: 312 RGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPFLRDIERLIKL 371
Query: 545 GQP 547
P
Sbjct: 372 TIP 374
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 32/203 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGL++ +++AL + P+ +QA +V VL+G+D+V A+TG+GKT ++ +P++
Sbjct: 8 TFPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILH 67
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----------VRMANALSADNG 194
L T E + A +LVL P L Q+ VR + AL A G
Sbjct: 68 HLVTKRLRPERRS---------ARALVLSPTRELSGQILESFRLYGKHVRPSTAL-AIGG 117
Query: 195 EPLVR-AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
P+ R A ++ GG DV+V+TP L++ ++ R++ V+ V DEAD +
Sbjct: 118 VPIGRQARSLAGGV-------DVLVATPGRLVDLLE-NNAVRLDM---VEVFVLDEADQM 166
Query: 254 LCGSFQNQVIRLINMFRFDEKQL 276
L F + + ++ + L
Sbjct: 167 LDMGFIHAIRSIVARLPHKRRNL 189
>gi|242096058|ref|XP_002438519.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
gi|241916742|gb|EER89886.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
Length = 567
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
++ A R++ + + MVF ++ +V ++L GIECY H L ++R T
Sbjct: 344 VLYAFLRRMQLREQGVKIMVFFSSCSSVKFHAELLNFFGIECYDIHGQLKQQKRTSTFFR 403
Query: 470 F-QEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
F +EK G+ +CT+ AARG+DIP+V +++Q D D++HRVGRTAR
Sbjct: 404 FLKEKRGILLCTNVAARGLDIPDVDYIVQYDPPDDPKDYIHRVGRTARG 452
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
N T+ L +S+ +A+ + + +QA S+ ++ G DV+ +A+TGSGKT ++L+P
Sbjct: 101 NKTFSELYISEFTAKAITEMNYTHLTEIQARSIPHLMLGSDVLGSAKTGSGKTLAFLIPA 160
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL---VR 199
IE L A N +V+CP L Q +A L + + + +
Sbjct: 161 IELLHKACFTPRNGTG----------VIVVCPTRELAIQTHNVAKELMKYHSQTIGYVIG 210
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
+ + +++V+TP LL+++ R + ++ ++ DEAD +L +F+
Sbjct: 211 GTNIRNEANQIVKGINLLVATPGRLLDHL---RSTSGFHYKRLQCLIIDEADRILEQNFE 267
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
Length = 786
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 40/236 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGLS + RA++ G+ P+ +Q ++ +LSG DVV A TGSGKT ++L+P++E+
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L K+ P +L+L P L Q ++ L+ VR +
Sbjct: 89 L-------------KQHVPQTGVRALILSPTRDLALQTLKFTKELARYTD---VRISLLV 132
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG PD+I++TP L++++ + R V+YVVFDEAD L F
Sbjct: 133 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSL---RTVEYVVFDEADCLFGMGF 189
Query: 259 QNQVIRLINMFRFDEKQ-----------LSRMNESGVEKP--LEMDNSSLTQPDLQ 301
Q+ +++ D +Q L+ ++G++ P + +D + PDL+
Sbjct: 190 AEQLHKILAQLS-DNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLK 244
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
++Q + +ATLP + A A L+ D + + +P LK + + + ++ A
Sbjct: 203 NRQTLLFSATLPSALAEFAKAGLQ----DPQLVRLDLDTKISPDLKVNFFTLRHEEKLAA 258
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ ++E++ + +T++F +T V + + + GIE + D+ + R +
Sbjct: 259 LLYLIREQI---SSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISR 315
Query: 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + + TD AARGIDIP + +V+ DF F+HRVGR ARAG+ G S T
Sbjct: 316 FRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 375
Query: 529 ESN 531
+
Sbjct: 376 SED 378
>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
Length = 397
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV + D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVDQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
gi|118575171|sp|Q2H720.1|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
Length = 562
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E ++ ++F T +T+ L+ G H D ER L
Sbjct: 369 DKMIKHLEKIMEDKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVL 428
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG G +
Sbjct: 429 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 488
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N RDLV ++ A + P
Sbjct: 489 FTTDNSKQARDLVGVLQEAKQHIDP 513
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 28/199 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 137 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 196
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P L Q+ + + +R V
Sbjct: 197 HI----------NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSS---RIRNTCV 243
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ R +R V Y+V DEAD +L
Sbjct: 244 YGGV--PKGPQTRDLSRGVEVCIATPGRLIDMLESGRTN----LRRVTYLVLDEADRMLD 297
Query: 256 GSFQNQVIRLINMFRFDEK 274
F+ Q+ ++I R D +
Sbjct: 298 MGFEPQIRKIIGQIRPDRQ 316
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT+P N +K A L+ D + +S P +++ +IEV + DAL
Sbjct: 176 RQTMLFSATMPPNIQKLANQFLR----DPEHVSVMPKQVSAPLIEQAYIEVPERVKFDAL 231
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
RL +VF T V +++ L+ G H DLS +R + F
Sbjct: 232 -----SRLLDMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKF 286
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ V V TD AARG+D+ V+HVI D ++HR+GRT RAG+ G S T
Sbjct: 287 RDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTP 346
Query: 530 SNRDLVDTIRRAAK 543
D ++ I R +
Sbjct: 347 REIDHLNFIERVTR 360
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 31/192 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ GL +L++A+ GF + +Q ++ ++G+D++ A+TG+GKT ++ +PLI
Sbjct: 3 TFVEFGLEPKLLQAITELGFEEATPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLIS 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ +P+ R +LV+ P L QV L+ G VR++ +
Sbjct: 63 KI--------------DPSEERVVALVMTPTRELAIQVAEEIGKLTRFKG---VRSLPIY 105
Query: 205 GGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ IG+ P +I+ TP LL++I+ K R + V+ VV DEAD +L
Sbjct: 106 GGQD--IGRQIRALKKHPQIIIGTPGRLLDHINRKTIR----LDHVQTVVLDEADEMLDM 159
Query: 257 SFQNQVIRLINM 268
F + ++++
Sbjct: 160 GFMEDITSILSL 171
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Vitis vinifera]
Length = 784
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 40/236 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++SLGLS + RA++ G+ P+ +Q ++ +LSG DVV A TGSGKT ++L+P++E+
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 146 LCTALGDSENSNSDKEPTPPRA-PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L K+ P +L+L P L Q ++ L+ VR +
Sbjct: 89 L-------------KQHVPQTGVRALILSPTRDLALQTLKFTKELARYTD---VRISLLV 132
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG PD+I++TP L++++ + R V+YVVFDEAD L F
Sbjct: 133 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSL---RTVEYVVFDEADCLFGMGF 189
Query: 259 QNQVIRLINMFRFDEKQ-----------LSRMNESGVEKP--LEMDNSSLTQPDLQ 301
Q+ +++ D +Q L+ ++G++ P + +D + PDL+
Sbjct: 190 AEQLHKILAQLS-DNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLK 244
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA 409
++Q + +ATLP + A A L+ D + + +P LK + + + ++ A
Sbjct: 203 NRQTLLFSATLPSALAEFAKAGLQ----DPQLVRLDLDTKISPDLKVNFFTLRHEEKLAA 258
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ ++E++ + +T++F +T V + + + GIE + D+ + R +
Sbjct: 259 LLYLIREQI---SSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISR 315
Query: 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + + TD AARGIDIP + +V+ DF F+HRVGR ARAG+ G S T
Sbjct: 316 FRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 375
Query: 529 ESN 531
+
Sbjct: 376 SED 378
>gi|357500171|ref|XP_003620374.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495389|gb|AES76592.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 431
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LGL + L+ A E G+ P +Q ++ P L GKD++ AETGSGKT ++ +P++
Sbjct: 3 SFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAETGSGKTGAFALPILH 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L A P P + V+ P L Q+ AL ++ G V+ +
Sbjct: 63 ALLEA------------PRPNHFFACVMSPTRELAIQISEQFEALGSEIG---VKCAVLV 107
Query: 205 GG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q I K P +IV TP +L+++ K + R +KY+V DEAD LL F
Sbjct: 108 GGIDMVQQSVKIAKLPHIIVGTPGRVLDHL--KNTKGFSLAR-LKYLVLDEADRLLNEDF 164
Query: 259 QNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSS 294
+ + ++ M F F K++ ++ + P++++ SS
Sbjct: 165 EESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSS 210
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAA 483
S +MVF T D+ + IL+ G++ + +S +R L F+ + +CTD A
Sbjct: 244 STSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVA 303
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+RG+DIP V VI D T++ D++HRVGRTARAG+ G+ SL +
Sbjct: 304 SRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 349
>gi|340939598|gb|EGS20220.1| ATP-dependent RNA helicase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 548
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE 450
N R+++K V + L+E ++E + + R +VF V + L+ G+
Sbjct: 351 NSRIEQKIEVVDPRAKEQRLLELLREAQKGSGKNDRILVFCLYKKEAIRVEQFLQKRGMR 410
Query: 451 CYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDF 507
H DL ++R ++L +F K G V V TD AARG+DIP V VI F + D+
Sbjct: 411 VASIHGDLRQDQRTRSLESF--KAGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDY 468
Query: 508 LHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAAKLGQPV 548
+HR+GRT RAG+ G +L+TE ++ L++ +R A QPV
Sbjct: 469 VHRIGRTGRAGKEGKAITLFTEHDKAHSGSLINILRAA---NQPV 510
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 22/172 (12%)
Query: 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163
F P+ +QAAS LSG+DV+ AETGSGKT ++ +P +E L ++ K+ T
Sbjct: 131 FSAPTPIQAASWPFSLSGRDVIGIAETGSGKTIAFSLPCVESLSSS---PRPKYFKKDKT 187
Query: 164 P-PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG-----QGWPIGK---P 214
P PRA +V+ P L Q ++L++ G + V + GG Q + K
Sbjct: 188 PHPRA--VVVSPTRELAMQTHAAMSSLASFVG---LSTVCLYGGASKDEQRGLLRKNNGA 242
Query: 215 DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
D+IV+TP L + + E V + V DEAD +L F+ I+LI
Sbjct: 243 DIIVATPGRLKDFLAEGCVSLSE----VSFAVLDEADRMLDKGFEED-IKLI 289
>gi|340726173|ref|XP_003401436.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
terrestris]
Length = 550
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 108/207 (52%), Gaps = 23/207 (11%)
Query: 73 GSSDTFFADDNVT----WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAA 128
S++ D+N T + L L DR+++A+ G+ P+++Q ++ ++ GKD++I A
Sbjct: 2 ASNEMEVDDENETKPKNFHELELDDRILKAISKLGWVEPTLIQEKAIPLMMEGKDILIRA 61
Query: 129 ETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188
TGSGKT ++ +PLI+K+ + + + T L++ P+ LC+Q+ +
Sbjct: 62 RTGSGKTAAFTIPLIQKILS---------NKRMQTKQEIKGLIVAPSKELCKQIHDVIIC 112
Query: 189 LSADNGEPLVRAVAV------CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
L+ V+A+ V + KPD++V TP+ LL ++ + M+ + +
Sbjct: 113 LTVKCSRE-VKAIDVSPQLDLSAQKPLLAEKPDIVVGTPSRLLQHL---KANNMKLKQSL 168
Query: 243 KYVVFDEADMLLCGSFQNQVIRLINMF 269
+ ++ DEAD++ +++++ L+N
Sbjct: 169 ETLIIDEADLVFSFGYEDEIKSLLNYL 195
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 24/142 (16%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD--- 481
+T++F NTVD Y + L+ GI + +L R + + F + + +D
Sbjct: 267 KTIIFVNTVDRCYKLKLFLEQFGIPTCVLNSELPAVSRCRAVTQFNSGTYDIIIASDEKS 326
Query: 482 --------------------AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
ARGID VS+VI DF ++HR GRTAR G
Sbjct: 327 LEEPHIMKVKRGRRKKDKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQG 386
Query: 522 LVTSLYTESNRDLVDTIRRAAK 543
S + R L++ + K
Sbjct: 387 TALSFVSIRERPLLEQVESELK 408
>gi|302665674|ref|XP_003024446.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
gi|291188499|gb|EFE43835.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
Length = 940
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 94 FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T A L+L P+ L Q +++ L ++ V + G
Sbjct: 154 LRN------------HSTKVGARGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVG 198
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ PD+I++TP L+ N+D + ++Y VFDEAD L
Sbjct: 199 GDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLD---------LSSIRYAVFDEADRLF 249
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 250 EMGFAAQLTEILHALPTSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQ 308
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + +L+ +G + L+ R + N + + V TD AAR
Sbjct: 378 TIVFVATKHHVEYIANLLRHSGFAVSYAYGSLNQTARKIQVQNLRAGISNILVVTDVAAR 437
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + ++HRVGRTARAGQ G SL +S+
Sbjct: 438 GIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSD 483
>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
Length = 392
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP-RLKEK 397
D +++ R++Q + +AT+ VL + + D IS + + +P +L +
Sbjct: 162 DVKKIVGECPRNRQTLLFSATI-----SREITVLARKY-QKDPISVSAEAYVDPSKLTQL 215
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ +V + + L+ +K E+ MVF NT V LK GI H
Sbjct: 216 YYDVPDNLKFSLLVHLLKHE-----ESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGG 270
Query: 458 LSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
L+ ++R + + F V VCTD AARG+DIP+VSH+ D D++HR+GRTAR
Sbjct: 271 LTQDKRDRVMKQFHSHDVRVLVCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTAR 330
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG+ G+ ++ ++RD D+ RR K
Sbjct: 331 AGKDGVAINIL--ASRDY-DSFRRVMK 354
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG+ + +++++E GF RP+ +Q S+ +LSGKDV+ A TGSGKT ++ +IE
Sbjct: 3 SFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADIIE 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K G +LVL P L +QV A ALS + +R VAV
Sbjct: 63 KTEKGTG---------------IRTLVLTPTRELAQQV---AAALSLFSKYKPLRIVAVF 104
Query: 205 GG-----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GG Q + + DV+V TP +L++I RR + V +V DEAD +L F
Sbjct: 105 GGVSINPQITQLRRADVVVGTPGRILDHIG----RRTLNLSKVNILVLDEADRMLDMGFI 160
Query: 260 NQVIRLI 266
V +++
Sbjct: 161 PDVKKIV 167
>gi|357605298|gb|EHJ64546.1| hypothetical protein KGM_21268 [Danaus plexippus]
Length = 985
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 10/154 (6%)
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+E +T++ L++ + E ++T++F T V +T+ +K G C H D
Sbjct: 333 MEYEKETKLSTLLKEIMAEKE-----NKTIIFIETKRRVDDITRKMKRDGWPAVCIHGDK 387
Query: 459 SLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S ER L +F+ K + V TD AARG+D+ +V VI D+ +++ D++HR+GRT R
Sbjct: 388 SQNERDWVLQDFRSGKAPILVATDVAARGLDVDDVKFVINFDYPSNSEDYVHRIGRTGRT 447
Query: 518 GQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
+ G + +T SN DLV ++ A ++ P
Sbjct: 448 NKTGTAYTFFTPSNAAKAADLVSVLKEAKQVVNP 481
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 20/198 (10%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ G D ++ ++ GF +P+ +QA LSG D+V A TGSGKT SY++P I
Sbjct: 106 LTFDEAGFPDYVMDEIDKMGFSKPTPIQAQGWPIALSGCDMVGIASTGSGKTLSYILPAI 165
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ + S+ P +LVL P L +Q+ + + + N +
Sbjct: 166 ----VHINNQPKSSRGDGPI-----ALVLAPTRELAQQIQEVCDKFA--NTSKIHNTCLF 214
Query: 204 CGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G P + +++++TP LL+ ++ R ++ Y+V DEAD +L F
Sbjct: 215 GGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTN----LKRCTYLVLDEADRMLDMGF 270
Query: 259 QNQVIRLINMFRFDEKQL 276
+ Q+ ++I R D + L
Sbjct: 271 EPQIRKIIEQIRPDRQTL 288
>gi|345568976|gb|EGX51845.1| hypothetical protein AOL_s00043g579 [Arthrobotrys oligospora ATCC
24927]
Length = 621
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 18/190 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ SL L RL++A+ + P+ VQ + + P L GKD++ A+TGSGKT +YL+P++
Sbjct: 14 SFTSLPLDPRLLQAIATLNYSTPTPVQQSVIPPALEGKDILARAKTGSGKTAAYLLPILH 73
Query: 145 KLCTALGDSENSNSD-----KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLV- 198
++ T+ D N+NS+ + +L+L P L +QV ++ + G+ +
Sbjct: 74 RILTSQQDVNNANSNDGEGGSGGSAAATEALILVPTRELADQVYKVIEQYTTFCGKQITA 133
Query: 199 ----RAVAVCGGQGWPIGKPDVIVSTP--AALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
R ++ Q + P +++STP AA+ N + + +KY+V DEAD+
Sbjct: 134 VNIARNISDSIQQSLLLSHPKIVISTPSRAAIHFNTETLS------LESLKYLVIDEADL 187
Query: 253 LLCGSFQNQV 262
+L +N +
Sbjct: 188 ILSYGHENDM 197
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
+RG+D NV+ V+ D ++ ++HR+GRTARAG G+ S Y
Sbjct: 400 GVSRGVDFQNVTCVLNFDLPVTSKSYMHRIGRTARAGNSGMALSFY 445
>gi|336125948|ref|YP_004577904.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343665|gb|AEH34947.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 408
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 10/211 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ ++KQ + +ATL + ++ A AVL + I N + ++E+
Sbjct: 162 DVQRLLSFMPQTKQTLLFSATLAADLEQVALAVLN----NPVKIEANQANQVVEEIEEQL 217
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V ++ ALI +K+R + +VF + D+ AV K L AGI H +
Sbjct: 218 YLVNKGSKAQALIALIKQR-----AGQQVLVFISARDSADAVAKKLLKAGIRAAALHGEK 272
Query: 459 SLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
R KTL +F+ + V V TD ARGI I + VI D SA ++HRVGRTARA
Sbjct: 273 DQVIREKTLADFKANQVDVLVATDLLARGIHIDALPVVINFDLPPSAPVYIHRVGRTARA 332
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
GQ G+ SL ++ IR + P+
Sbjct: 333 GQGGVAISLVCHGESQALEAIRSLTQRALPL 363
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ + L LS L+ AL S I Q A + VLSG+DV+ A+TGSGKT +Y +PL+
Sbjct: 1 MNFSKLNLSAPLMAALPASRHTATKIQQLA-IPAVLSGQDVLAFAQTGSGKTLAYGLPLL 59
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+++ E S+V+ P L +QV + + +++ G + +
Sbjct: 60 QRI--------------EVNTLEIQSVVIVPTRELAQQVSQELSTVASKMG---ISLCTL 102
Query: 204 CGG-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
CGG Q + K P +IV+TP LL+ + +++ + + VV DEAD LL
Sbjct: 103 CGGVAQEEQLAQLAKLPHLIVATPGRLLDLLT----QQLISLESMHCVVLDEADRLLEMG 158
Query: 258 FQNQVIRLINMF 269
F V RL++
Sbjct: 159 FWPDVQRLLSFM 170
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 40/244 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VT+K LG++D L E + P+ +Q ++ L GKD++ AETGSGKT ++ +P++
Sbjct: 19 VTFKDLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPIL 78
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L EN P R +L+L P L Q+ AL + G V+ +
Sbjct: 79 QALL------EN--------PQRYFALILTPTRELAFQISEQIEALGSSIG---VKCAVI 121
Query: 204 CGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + KP +I++TP L+++++ + + R +K +V DEAD +L
Sbjct: 122 VGGMDMMAQSLMLAKKPHIIIATPGRLVDHLENTKGFSL---RNLKVLVMDEADRILNMD 178
Query: 258 FQNQVIRLINM-------FRFD---EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ 307
F+ +V +++ + F F K++ +++ + + P+ ++ S+ Q E LQ
Sbjct: 179 FEEEVDKILKVIPRERRTFLFSATMTKKVQKLHRASLVDPVRVEVST----KFQTVEQLQ 234
Query: 308 DEYI 311
YI
Sbjct: 235 QYYI 238
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
MVF T + V +L+ G++ H ++ +R +L F+ K + + TD ++RG
Sbjct: 262 MVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILISTDVSSRG 321
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
+DIP+V VI D T + D++HRVGRTARAG+ G +L T+ + +L I +
Sbjct: 322 LDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQ 375
>gi|344230357|gb|EGV62242.1| ATP-dependent RNA helicase DBP9 [Candida tenuis ATCC 10573]
Length = 560
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 14/190 (7%)
Query: 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHS 137
+ DD+V+WK+ L RL +A+E+ GF P++VQ+ ++ L K D++ A TGSGKT +
Sbjct: 14 YLDDSVSWKAFKLDSRLNQAIEHLGFRTPTLVQSNAIPLALDEKRDIIAKASTGSGKTAA 73
Query: 138 YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL--VLCPNVVLCEQVVRMANALSADNGE 195
Y +P+I+ + T E + PT A + + +V C + + N LS++ +
Sbjct: 74 YCIPIIQNILTGKDIKEIQSVILVPTRELANQVHQFIIKLLVYCANKINVIN-LSSNLSD 132
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
++ ++ V KP++I+STP+ L+ +D K + VK + DE D++L
Sbjct: 133 QVINSMLV--------NKPEIIISTPSKLIQVLD-KASPSISLA-SVKNLTIDEVDLILS 182
Query: 256 GSFQNQVIRL 265
+++ VI+L
Sbjct: 183 YGYKDDVIKL 192
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTD--- 481
+T+VF N++D Y + L+ GI C + +L + R + F + + + TD
Sbjct: 269 KTLVFVNSIDRGYRLKLFLEQFGIRCCILNSELPVNSRLHIVDEFNKNIYNLLIATDDTN 328
Query: 482 ------------------------AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+RG+D NV+ V+ D T++ ++HRVGRTARA
Sbjct: 329 DTNEKEVEDSTSNKKDKVKKDKEYGVSRGVDFRNVACVLNFDLPTTSRAYVHRVGRTARA 388
Query: 518 GQYGLVTSL 526
G+ G+ S
Sbjct: 389 GKSGMALSF 397
>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
Length = 1244
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 134/271 (49%), Gaps = 41/271 (15%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 538 TWAQCGVSKKEMDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 597
Query: 145 KLCT--ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
+ +L D + A ++++ P LC Q+ + S G +R V
Sbjct: 598 HILDQPSLEDGDG-----------AIAIIMAPTRELCMQIGKDIRKFSRSLG---LRPVC 643
Query: 203 VCGGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG G I + ++IV TP +++ + R+ +R V YVV DEAD +
Sbjct: 644 VYGGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDM 702
Query: 257 SFQNQVIRLINMFRFDE----------KQLSRMNESGVEKPLE--MDNSSLTQPDLQDEE 304
F+ QV+R+I+ R D +Q+ + ++KP+E + S+ D+ E+
Sbjct: 703 GFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPVEVIVGGRSVVCKDV--EQ 760
Query: 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335
N+ +SDE F ++ G+ +ET GSI
Sbjct: 761 NVV--ILSDEAKFFKLLELLGVYQET--GSI 787
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 10/209 (4%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + + +++ + +
Sbjct: 710 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PVEVIVGGRSVVCKD--VEQNVVIL 765
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
+ + + L+E L ET +VF + + + + L A C H +
Sbjct: 766 SDEAKFFKLLEL----LGVYQETGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 821
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG
Sbjct: 822 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNK 881
Query: 521 GLVTSLYT-ESNRDLVDTIRRAAKLGQPV 548
G + T E +R D IR G PV
Sbjct: 882 GSAYTFITPEQSRYAGDVIRALDLSGTPV 910
>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 417
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q +F +AT P A+ M D I + P + ++ IEV + L
Sbjct: 185 RQSLFFSATFP----PAIEALAAGMLTDPLRIEVEAVKQAEPEIVQRAIEVDPSRRTQLL 240
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
L + SR +VF T A V L+ A IE +H +LS +R + L +F
Sbjct: 241 -----RHLAQTEKWSRVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDF 295
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ K V V TD AARGIDI + V+ D S+VD++HR+GRT RAG+ G+ S +
Sbjct: 296 KAKLLQVVVATDVAARGIDIAQLPVVVNYDLPRSSVDYIHRIGRTGRAGETGIAISFVSA 355
Query: 530 SNRDLVDTIRRAAKLGQP 547
I + K+ P
Sbjct: 356 ETEAHFKLIEKRQKMSVP 373
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 33/198 (16%)
Query: 86 WKSLGLSDRLI----RALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+ SLG S L+ RA+ G+ P+ +QAA++ +L G+D+V +A+TGSGKT ++ +P
Sbjct: 3 FSSLGFSPALLPVLLRAIAEKGYLAPTAIQAAAIPAILQGRDIVGSAQTGSGKTAAFALP 62
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV----VRMANALSADNGEPL 197
L+ +L A D++ R LVL P L QV V +AN L
Sbjct: 63 LLHQLAQAPADAKR----------RIRGLVLVPTRELAAQVGEAIVSLANYLPQR----- 107
Query: 198 VRAVAVCGG-----QGWPI-GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
V+ V GG Q + G D+IV+TP L++ ID + + V +V DEAD
Sbjct: 108 VKVAVVFGGVSINPQMMNLRGGADIIVATPGRLIDLIDHNALK----LDQVGMLVLDEAD 163
Query: 252 MLLCGSFQNQVIRLINMF 269
LL F ++ R++ +
Sbjct: 164 RLLDLGFGEELGRILALL 181
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 21/209 (10%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
SD+ + T+ GL+ ++RA+ G+ P+ +QA ++ VLSG+DV+ AA+TG+GK
Sbjct: 2 SDSVAKPVDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGK 61
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSAD 192
T S+ +P+I++L ++ +P R P +L+L P L +QV AN +
Sbjct: 62 TASFSLPIIQRLL--------PQANTSASPARHPVRALILTPTRELADQVA--ANVHAYA 111
Query: 193 NGEPLVRAVAVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVF 247
PL AV G P +++++TP LL+++ +++ + V+ +V
Sbjct: 112 KHTPLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV----QQKTANLGQVQILVL 167
Query: 248 DEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + R++N+ + + L
Sbjct: 168 DEADRMLDMGFLPDLQRILNLLPKERQTL 196
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
A+++ +++R + +VF N+ + + ++ GI H D S ER + L
Sbjct: 247 AVVKLIRDR-----SLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALD 301
Query: 469 NFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ +G + V TD AARG+DI + VI D +A D++HR+GRT RAG G SL
Sbjct: 302 AFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL 360
Query: 527 YTESNR----DLVDTIRRAAKL 544
+ + R D+ I+R L
Sbjct: 361 CSPNERKQLADIEKLIKRTLSL 382
>gi|240275931|gb|EER39444.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H143]
Length = 621
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 19/192 (9%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A + ++++L L RL++AL F +P+ +QA ++ L GKDV+ A+TGSGKT +YL
Sbjct: 17 AGKSSSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYL 76
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ + L N+ PT +L+L P L EQV R A SA +G+ VR
Sbjct: 77 LPVLQSI---LQQKMNN-----PTHKSISALILVPTRELAEQVHRTAILFSAFSGKD-VR 127
Query: 200 AVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+V + + + PD++VSTPA + N++ + R + ++V DEAD++
Sbjct: 128 SVNLTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSS---ALSLER-LTHLVIDEADLV 183
Query: 254 LCGSFQNQVIRL 265
L ++ + L
Sbjct: 184 LSYGYEEDMQSL 195
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID NV+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 392 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKSGMALSFVIPSDQ 440
>gi|410915182|ref|XP_003971066.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Takifugu
rubripes]
Length = 1040
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S +++ AL+ G+ +P+ +QA ++ V+SG+D++ A+TGSGKT ++L+P+
Sbjct: 363 TWVQCGVSMKILSALKKHGYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFR 422
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ D + P S+++ P L Q+ + S G +R V V
Sbjct: 423 HIM----DQRPLEESEGPI-----SVIMTPTRELALQITKECKKFSKPLG---LRVVCVY 470
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V Y+V DEAD + F
Sbjct: 471 GGTGISEQIAELKRGAEIIVCTPGRMIDMLGAN-SGRVTNLRRVTYMVLDEADRMFDMGF 529
Query: 259 QNQVIRLINMFRFD 272
+ QV+R+++ R D
Sbjct: 530 EPQVMRIVDSVRPD 543
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVC 479
E ++F + + A+ K L A C H + +R + +F K G + V
Sbjct: 608 ERGSVIIFVDKQEHADALLKDLMKASYPCMSLHGGIDQYDRDSIINDF--KNGACRLMVA 665
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
T AARG+D+ + V+ + D++HR GRT RAG G + TE I
Sbjct: 666 TSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQVRYAGDII 725
Query: 540 RAAKL 544
+A +L
Sbjct: 726 KALEL 730
>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 751
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAAR 485
T++F T ++T L T G C H DLS ER L +F+ + V TD A+R
Sbjct: 545 TLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERESALNSFRTNQTPYLVATDVASR 604
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRA 541
G+ IPNV +VI D T ++HR+GRT RAG+ G S Y E N+ DL+ +R++
Sbjct: 605 GLHIPNVLYVINFDLPTDIHVYVHRIGRTGRAGKKGFAISFYNERNKSLSTDLLQLMRKS 664
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ + L D L + ++ + + +P+ VQ +++ ++ G+D++ A+TGSGKT ++L P+I
Sbjct: 286 SFMDIDLGDVLFKNIKYAKYTKPTPVQKSALPIIMKGRDLMACAQTGSGKTAAFLFPIIS 345
Query: 145 K-LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L + + P P +LVL P L Q+ A+ S G P+ V
Sbjct: 346 GILLDGAPEPLAAYRPGVPRPVHPRALVLAPTRELALQIYDEASKFSY--GSPVTSVVVY 403
Query: 204 CGGQ-GWPIGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
G + I + D++V+T L +D R R+ VKY+V DEAD +L F
Sbjct: 404 GGAEISHQIAELDRGCDILVATTGRL---VDLLSRGRVSLAH-VKYLVLDEADRMLDMGF 459
Query: 259 QNQVIRLI 266
+ Q+ +++
Sbjct: 460 EPQIRQIV 467
>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|384424520|ref|YP_005633878.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
Length = 397
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLFG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 449
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 24/188 (12%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D +++ L L+ +IRAL + F P+ VQA ++ +LSG+D+ A TGSGK+ ++L+
Sbjct: 4 DKIISFLDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLI 63
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P+++KL T G P +L++ P L +Q+ + + L+A + +
Sbjct: 64 PIVQKLLTFRG------------LPGPKALIMSPTRELAQQLKAVCDMLAAHCA---ITS 108
Query: 201 VAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG + PD+I+ TP +++I + ++E +++ V DEAD LL
Sbjct: 109 TLVIGGVSDEEQRELLTPAPDIIIGTPGRFIDSIFNAKVLKLEH---LQFFVLDEADRLL 165
Query: 255 CGSFQNQV 262
F++Q+
Sbjct: 166 GKGFESQL 173
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+T+VF T + V + K GI H DLS R + + F+E K + +D AA
Sbjct: 252 KTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYLLASDLAA 311
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
RGIDIP++ +VI ++HR GRT RAG+ G S+Y
Sbjct: 312 RGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMY 354
>gi|85096857|ref|XP_960335.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
gi|74628745|sp|Q7S6F3.1|DBP9_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-9
gi|28921823|gb|EAA31099.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
Length = 676
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 18/183 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D ++T+ LGL RL++A+ F +P++VQ ++ L+G+DV+ A+TGSGKT +Y++
Sbjct: 92 DADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVL 151
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA-----DNGE 195
P++ + +PTP + +L+L P L +QV + +A SA
Sbjct: 152 PVLSGIL--------KRKATDPTPFTS-ALILVPTRELADQVHKAIDAFSAFCTKDIQSA 202
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
L V+ + PDVIVSTPA +NI+ V ++Y+V DEAD++L
Sbjct: 203 KLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALS----VAKLQYLVLDEADLVLS 258
Query: 256 GSF 258
+
Sbjct: 259 YGY 261
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RGID NV+ VI D TS+ ++HR+GRTARAG+ G+ S+
Sbjct: 449 SRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRAGIALSM 491
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 23/193 (11%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D +K G +++ + N+G+ + +QA S P+L G+DV+ AA+TG+GKT ++ +P
Sbjct: 2 DKKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLP 61
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
L+ ++ S +P + P LVL P L EQ+ + N ++ +G PL R
Sbjct: 62 LLNRMIPKASFST--------SPAKHPVRMLVLTPTRELAEQISK--NVIAYADGLPL-R 110
Query: 200 AVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG + K D++++TP LL++++ +R + V++++ DEAD +
Sbjct: 111 TSLIYGGVDFNAQKLELMRGADIVIATPGRLLDHVE----QRTINLNQVEFLILDEADRM 166
Query: 254 LCGSFQNQVIRLI 266
L F +++++
Sbjct: 167 LDMGFMPDLLKIL 179
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F+N + + L + H D + ER K L F+ K + V TD AARG
Sbjct: 254 IIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFKSAKCNILVATDVAARG 313
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD-------LVDTIR 539
+DI +V VI + ++ D++HR+GRT RAG+ G+ S+Y+ + L+ T
Sbjct: 314 LDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYSSDEEESLHEIETLIGTKF 373
Query: 540 RAAKLGQP 547
R+ KL P
Sbjct: 374 RSTKLSIP 381
>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
reinhardtii]
gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
reinhardtii]
Length = 571
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 19/188 (10%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
W+ GL L++A+E G+ +PS +Q A++ L +DV+ AETGSGKT ++++P++
Sbjct: 154 WEESGLPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAY 213
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ N + E P A +VL P L +Q+ + L+ G R +V G
Sbjct: 214 IMR----QPPMNEENEADGPYA--VVLAPTRELAQQIEEETHKLAHYTG---YRVTSVVG 264
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G QG + K +++++TP LL+ ID R + YVV DEAD ++ F+
Sbjct: 265 GQSIEEQGTKLRKGCEIVIATPGRLLDCID----RHYAVLNQCNYVVLDEADRMIDLGFE 320
Query: 260 NQVIRLIN 267
QVI +++
Sbjct: 321 PQVIGVLD 328
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481
+ R +VF NT V + + G C H + ++R + F++ V + TD
Sbjct: 414 DEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGIKGFRDGTYNVLIATD 473
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
A RGID+P+V+ V+ D T+ ++ HR+GRT RAG+ G+ + T
Sbjct: 474 VAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRAGRKGIAVTFLT 520
>gi|428671740|gb|EKX72655.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 591
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 10/186 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P K + + D +++ + N ++++ I D + L
Sbjct: 331 RQTVMFSATFP----KEIQQLARDFLNDYIYLAVGRVGSTNEFIRQRLIYADQDQKPKYL 386
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ +KE + + ++F T + L+ H D S ++R L F
Sbjct: 387 VKLLKENV-----SGLVLIFVETKRRADMIEAYLQRENFSAVNIHGDRSQQDREHALRLF 441
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+ + + V TD AARG+DI N++HVI D T+ D++HR+GRT RAG G+ TSL E
Sbjct: 442 KTGEAPILVATDVAARGLDINNITHVINCDLPTNIDDYVHRIGRTGRAGNVGVATSLVNE 501
Query: 530 SNRDLV 535
+NR ++
Sbjct: 502 NNRPIL 507
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 97/188 (51%), Gaps = 20/188 (10%)
Query: 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149
G+ + L+ ++ + +P+ +Q S+ +L+ +D++ A+TGSGKT ++L+P++ + +
Sbjct: 145 GIHELLLANIKKVNYTKPTPIQKHSISVILANRDLMACAQTGSGKTAAFLLPIVTAMLKS 204
Query: 150 ----LGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
G N+ + + P LVL P L Q+ A + G +R V + G
Sbjct: 205 GPPDSGPVANTYNSRIAQP---VCLVLSPTRELAIQIYNEARKFNFGTG---IRTVVLYG 258
Query: 206 G-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q + + + DV V+TP L + ++ RR++ F VKY+V DEAD +L F
Sbjct: 259 GSEVRRQLYDLDRGCDVCVATPGRLTDLLE---RRKISFT-FVKYLVLDEADRMLDMGFA 314
Query: 260 NQVIRLIN 267
Q+ +++
Sbjct: 315 PQIRAIVD 322
>gi|302506487|ref|XP_003015200.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
gi|291178772|gb|EFE34560.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
Length = 940
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 47/239 (19%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ +L +DVV A TGSGKT ++++P+IEK
Sbjct: 94 FQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 153
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L T A L+L P+ L Q +++ L ++ V + G
Sbjct: 154 LRN------------HSTKVGARGLILSPSRELALQTLKVVKELGRGTD---LKCVLLVG 198
Query: 206 GQ------GWPIGKPDVIVSTPAALLN-----NIDPKRRRRMEFVRGVKYVVFDEADMLL 254
G G+ PD+I++TP L+ N+D + ++Y VFDEAD L
Sbjct: 199 GDSLEEQFGYMASNPDIIIATPGRFLHLKVEMNLD---------LSSIRYAVFDEADRLF 249
Query: 255 CGSFQNQVIRLINMFRFDE----------KQLSRMNESGVEKP--LEMDNSSLTQPDLQ 301
F Q+ +++ K L +G+++P + +D S PDLQ
Sbjct: 250 EMGFAAQLTEILHALPTSRQTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQ 308
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T+VF T V + +L+ +G + L+ R + NF+ + V TD AAR
Sbjct: 378 TIVFVATKHHVEYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAAR 437
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + ++HRVGRTARAGQ G SL +S+
Sbjct: 438 GIDIPVLANVINYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSD 483
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G P+ +QA ++ P L G+D++ AA+TG+GKT ++ +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV + D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HGSIRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K DV+V+TP LL D R+ ++F R ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDVLVATPGRLL---DLYRQNAVQFAR-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAI 359
>gi|440636496|gb|ELR06415.1| ATP-dependent RNA helicase dbp2 [Geomyces destructans 20631-21]
Length = 548
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 399 IEVTVDTQVDALIEAVKE---------RLEFGAET--SRTMVFANTVDAVYAVTKILKTA 447
+E++ + ++ ++E V E LE E ++ ++F T +T+ L+
Sbjct: 348 LELSANHRITQIVEVVSEFEKRDKMTKHLEKIMENKENKILIFTGTKRVADDITRFLRQD 407
Query: 448 GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVD 506
G H D ER L F+ K + V TD A+RGID+ N++HV D+ ++ D
Sbjct: 408 GWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSED 467
Query: 507 FLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
++HR+GRT RAGQ G +L+T N RDLV+ + A + P
Sbjct: 468 YIHRIGRTGRAGQMGTAITLFTTDNQKQARDLVNVLTEAKQQIDP 512
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G +I ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 138 TFDEAGFPAYVINEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 197
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P LVL P E V++ ++ +R V
Sbjct: 198 HI----------NAQPLLAPGDGPIVLVLAPT---RELAVQIQQEITKFGKSSRIRNTCV 244
Query: 204 CGG--QGWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG +G I +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 245 YGGVPKGGQIRDLAKGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLDMG 300
Query: 258 FQNQVIRLINMFRFDEK 274
F+ Q+ +++ R D++
Sbjct: 301 FEPQIRKILGQIRPDKQ 317
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 24/186 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ SLGL D L++ALE G P+ +QA ++ P L G+D++ AA+TG+GKT ++ +PL+
Sbjct: 1 MTFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE--PLVRAV 201
++L T G +NS + +LVL P L EQV + D G+ PL AV
Sbjct: 61 QRL-TLEGPQVAANSVR--------ALVLVPTRELAEQV----HGSIRDYGQHLPLRTAV 107
Query: 202 AVCG----GQGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
A G Q + K DV+V+TP LL D R+ ++F R ++ +V DEAD +L
Sbjct: 108 AYGGVSINPQMMKLRKGVDVLVATPGRLL---DLYRQNAVQFAR-LQALVLDEADRMLDL 163
Query: 257 SFQNQV 262
F ++
Sbjct: 164 GFAREL 169
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDA 482
+ +VFA T +V + +L+ GI H D R + L F K G + V TD
Sbjct: 246 QALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRF--KAGEVDLLVATDV 303
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
AARG+DI + V+ D A D++HR+GRT RAG G SL +L+ I
Sbjct: 304 AARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAI 359
>gi|430809238|ref|ZP_19436353.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
gi|429498382|gb|EKZ96892.1| ATP-dependent RNA helicase [Cupriavidus sp. HMR-1]
Length = 641
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 36/220 (16%)
Query: 63 AAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK 122
AA AV + +NG + LGL ++RAL + + P+ VQA ++ L+G+
Sbjct: 40 AAPAVEASENG------------FAKLGLDPAILRALAEANYNTPTPVQAQAIPAFLAGR 87
Query: 123 DVVIAAETGSGKTHSYLVPLI----EKLCTALGDSENSN--SDKEPTP-PRAPS-LVLCP 174
D++++++TGSGKT ++++P I EK T +E + K P P P PS LVL P
Sbjct: 88 DLLVSSQTGSGKTAAFMLPAIQRISEKPATTHRPTEPAKRMKGKRPRPSPAQPSLLVLTP 147
Query: 175 NVVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAALLN 226
L QV A A G L R V ++ GG +P PD++V+TP LL+
Sbjct: 148 TRELALQVTEAA----AKYGRHLRRIVCASILGGMPYPKQLAMLARMPDILVATPGRLLD 203
Query: 227 NIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
+I+ R + ++ +VFDEAD +L F + + ++
Sbjct: 204 HIEAGR----IDLSALEMLVFDEADRMLDMGFADDIDAIV 239
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D++ R +TL + V V T
Sbjct: 309 ASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVAT 368
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 369 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGD 419
>gi|336271291|ref|XP_003350404.1| hypothetical protein SMAC_02116 [Sordaria macrospora k-hell]
Length = 602
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E T++ ++F T +T+ L+ G H D ER L
Sbjct: 404 DRMIKHLEKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVL 463
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG G +
Sbjct: 464 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 523
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N R+LV ++ A + P
Sbjct: 524 FTTDNSKQARELVGVLQEAKQQIDP 548
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 172 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 231
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L V++ +S +R V
Sbjct: 232 HI----------NAQPLLAPGDGPIVLILAPTRELA---VQIQQEISKFGKSSRIRNTCV 278
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 279 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLD 332
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 333 MGFEPQIRKIIGQIRPDRQTL 353
>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
hongkongensis HLHK9]
Length = 520
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 27/221 (12%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LGL RL+ ALE P+ VQA ++ +LSG+D++ +A+TG+GKT ++L+P + +
Sbjct: 6 FAALGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSR 65
Query: 146 LCTALGDSENSNSDKEPTP-PRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L EP R P LVL P L +QV + A S P V +V
Sbjct: 66 LLV------------EPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKI--PRVNVASV 111
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG Q + +P +V+V+TP L++ + R R++F R ++ +V DEAD +L
Sbjct: 112 IGGTSFRTQNQMLTRPIEVMVATPGRLMDQM---RSGRIDFSR-LEMLVLDEADRMLDMG 167
Query: 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
F V+ + + +Q + + + L+ + LT+P
Sbjct: 168 FSEDVMEIASQL-PKARQTAFFTATMTRRVLDFADELLTEP 207
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
+ + +VF T + L GI H D+ +R +TL + + V V TD
Sbjct: 247 DVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATD 306
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
AARGID+ +SHVI D A D++HRVGRT RAG G SL
Sbjct: 307 VAARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSL 351
>gi|153830178|ref|ZP_01982845.1| ATP-dependent RNA helicase RhlE, partial [Vibrio cholerae 623-39]
gi|148874357|gb|EDL72492.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
Length = 230
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV + D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVDQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
>gi|336467732|gb|EGO55896.1| hypothetical protein NEUTE1DRAFT_124213 [Neurospora tetrasperma
FGSC 2508]
gi|350287611|gb|EGZ68847.1| ATP-dependent RNA helicase dbp-3 [Neurospora tetrasperma FGSC 2509]
Length = 613
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
+GN N R+++K V + L E +KE + + R +VF V +
Sbjct: 408 NGNIELQANSRIEQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQ 467
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFA 501
L GI+ H DL ++R ++L F+ V V TD AARG+DIP V VI F
Sbjct: 468 FLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFP 527
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAAKLGQPV 548
+ D++HR+GRT RAG+ G +L+TE ++ LV+ I RAAK QPV
Sbjct: 528 LTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVN-ILRAAK--QPV 575
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
+ + P+ +QAAS LSG+DV+ AETGSGKT ++ +P +E L + NS
Sbjct: 196 AAYTNPTPIQAASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASR--PKPKFNSRDR 253
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG--------WPIGK 213
PRA +++ P L Q + L++ G + AV + GG +
Sbjct: 254 TAHPRA--VIVSPTRELAMQTHAALSGLASLVG---LSAVCIFGGSDKNEQRNLLYKNNG 308
Query: 214 PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
D+I +TP L + + + V + V DEAD +L F ++ I+LI
Sbjct: 309 VDIITATPGRLKDFLSEGSIS----LANVSFAVLDEADRMLDRGF-SEDIKLI 356
>gi|452950184|gb|EME55648.1| ATP-dependent RNA helicase [Amycolatopsis decaplanina DSM 44594]
Length = 499
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVF 477
E GA RT++F T V +T+ L+ G+ H + +R + L +F+E V
Sbjct: 275 EIGAREGRTIMFVRTKHHVDRLTERLREKGVHAAALHGGKTQGQRNRVLADFKEGYAPVL 334
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
V TD AARGI + ++S V+ D A D+LHR GRTARAG G+V +L T R +V
Sbjct: 335 VATDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTLVTHDQRRMV 392
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 40/212 (18%)
Query: 74 SSDTFFADDNV------TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA 127
+ D +D V TW LGL + L+RAL ++G P +Q+A++ LSG+DV+
Sbjct: 25 AGDAMLREDAVETVKAKTWAELGLPEPLLRALADAGITTPFPIQSATIPDALSGRDVLGR 84
Query: 128 AETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187
A+TGSGKT ++ + ++ +L + P PRA L+L P L QV
Sbjct: 85 AQTGSGKTLAFGLAMLTRL---------NGGRARPKHPRA--LILVPTRELAMQV----- 128
Query: 188 ALSADNGEPLVRAVAV-----CGGQGWPIGKP------DVIVSTPAALLNNIDPKRRRRM 236
AD+ PL +++ + GG + D++++TP L +++ R+
Sbjct: 129 ---ADSLTPLAKSLGLWCRTAVGGMAFTRQADALSRGVDLLIATPGRLSDHV----RQGT 181
Query: 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268
+ V +V DEAD + F QV ++++
Sbjct: 182 ASLSDVNFVALDEADQMADMGFMPQVREILDL 213
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT+P N +K A L+ D + +S P +++ +IEV + DAL
Sbjct: 179 RQTMLFSATMPPNIQKLANQFLR----DPEHVSVIPKQVSAPLIEQAYIEVPERVKFDAL 234
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
RL +VF T V +++ L+ G H DLS +R + F
Sbjct: 235 -----SRLLDMESPELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKF 289
Query: 471 QEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ V V TD AARG+D+ V+HVI D ++HR+GRT RAG+ G S T
Sbjct: 290 RDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTP 349
Query: 530 SNRDLVDTIRRAAK 543
D ++ I R +
Sbjct: 350 REIDHLNFIERVTR 363
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 31/192 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ LGL +L++A+ GF + +Q ++ + G+D++ A+TG+GKT ++ +PLI
Sbjct: 6 TFVELGLEPKLLQAITELGFEEATPIQEIAIPVAMMGRDLIGQAQTGTGKTAAFGIPLIS 65
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
K+ +P+ R +LV+ P L QV L+ G VR++ +
Sbjct: 66 KI--------------DPSEERVVALVMTPTRELAIQVAEEIGKLTRFKG---VRSLPIY 108
Query: 205 GGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GGQ IG+ P +I+ TP LL++I+ K R + V+ VV DEAD +L
Sbjct: 109 GGQD--IGRQIRALKKHPQIIIGTPGRLLDHINRKTIR----LNDVQTVVLDEADEMLDM 162
Query: 257 SFQNQVIRLINM 268
F + ++++
Sbjct: 163 GFMEDITSILSL 174
>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
Length = 560
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH---NPRLKEK 397
R++ + + +Q + +AT P ++ A L D++ N N +K+
Sbjct: 304 RKIVEQIRPDRQTLMFSATWPKEVQRMASDFLN------DYVQVNIGSMELAANHNVKQV 357
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ V T+ D +K E + ++F T A +TK L+ G H D
Sbjct: 358 ---IEVCTEFDKRGRLIKHLEHISQENGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGD 414
Query: 458 LSLEERAKTLVNFQEKGG-VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ER L F+ + V T A+RG+D+ ++S+VI +DF T+ D++H++GRT R
Sbjct: 415 KQQDERDWVLREFKSGNSPIMVATAVASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGR 474
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRA 541
AG+ G+ + +T N RDLV +R A
Sbjct: 475 AGRKGVAITFFTSENSKSARDLVGILREA 503
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
T++ G D ++R + GF PS +Q+ + LSG+D+V AETGSGKT + +P I
Sbjct: 135 TTFEETGYPDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGFALPSI 194
Query: 144 EKLCT----ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+ GD P A L+L P L V++ N VR
Sbjct: 195 LHIKAQAPLQYGDG-----------PIA--LILAPTRELA---VQIQNECQRFGSACRVR 238
Query: 200 AVAVCGGQGWPIGK--------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+V GG P G+ +++++TP L++ ++ + +R V Y+V DEAD
Sbjct: 239 TTSVYGGV--PKGQQIRSLQRGAEIVIATPGRLIDMMEIGKTN----LRRVTYLVMDEAD 292
Query: 252 MLLCGSFQNQVIRLINMFRFDEKQL 276
+L F+ Q+ +++ R D + L
Sbjct: 293 RMLDMGFEPQIRKIVEQIRPDRQTL 317
>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74654514|sp|Q9P6N8.1|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
pombe]
Length = 465
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 31/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+K LG+ D L A E GF P+ +Q ++ VL+ +DV+ A+TGSGKT ++ +P+I+
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L P+P A +VL P L Q+ A+ G VR+V +
Sbjct: 107 ELWN------------NPSPFFA--VVLAPTRELAYQISEQFEAIGGSIG---VRSVVIV 149
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + KP V+V TP L+++++ + + + +KY++ DEAD LL F
Sbjct: 150 GGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSL---KNLKYLIMDEADRLLDMDF 206
Query: 259 QNQVIRLINMFRFDEKQL--SRMNESGVEKPLEMDNSSLTQP 298
+ +++ + + + L S S VEK + +SL QP
Sbjct: 207 GPIIDKILKIIPHERRTLLFSATMTSKVEK---LQRASLHQP 245
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
++FA TV+ + +L+T G H LS R L F+ V TD AARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546
+DIP V VI D T + ++HRVGRTARAG+ G +L T+ DL +R A +G+
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQY--DLEPFLRIEATIGK 406
>gi|94311500|ref|YP_584710.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
Length = 634
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 35/215 (16%)
Query: 63 AAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK 122
AA AV + +NG + LGL ++RAL + + P+ VQA ++ L+G+
Sbjct: 40 AAPAVEASENG------------FAKLGLDAAILRALAEANYNTPTPVQAQAIPAFLAGR 87
Query: 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK-------EPTPPRAPSLVLCPN 175
D++++++TGSGKT ++++P I+++ + K P+P + LVL P
Sbjct: 88 DLLVSSQTGSGKTAAFMLPAIQRISEKPATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPT 147
Query: 176 VVLCEQVVRMANALSADNGEPLVRAV--AVCGGQGWP------IGKPDVIVSTPAALLNN 227
L QV A A G L R V ++ GG +P PD++V+TP LL++
Sbjct: 148 RELALQVTEAA----AKYGRHLRRIVCASILGGMPYPKQLAMLARMPDILVATPGRLLDH 203
Query: 228 IDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
I+ R + ++ +VFDEAD +L F + +
Sbjct: 204 IEAGR----IDLSALEMLVFDEADRMLDMGFADDI 234
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCT 480
A + +VF T ++ + L G H D++ R +TL + V V T
Sbjct: 308 ASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVAT 367
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
D AARGID+P+++HV+ D A D++HR+GRT RAG+ G+ +L +
Sbjct: 368 DVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHGD 418
>gi|350271992|ref|YP_004883300.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596834|dbj|BAL00795.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 389
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 148/328 (45%), Gaps = 72/328 (21%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V + LGLS ++RA++ + VQA + P+L+ KDV+ A TG+GKT +Y +P++
Sbjct: 7 VRFDRLGLSPEIMRAIKKRNIELSTPVQAGCIPPMLAWKDVIAKAPTGTGKTFAYGIPIV 66
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E + +P +++L P L Q+ ++A P VR V +
Sbjct: 67 EHI--------------DPEDEAVQAVILSPTRELAIQITDELRDIAA--FRPGVRMVCL 110
Query: 204 CGGQGWPIG--------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GGQ PIG KP ++V+TP L +++ +RR V + V+ DEAD +L
Sbjct: 111 YGGQ--PIGRQIDILKRKPQIVVATPGRLADHM----KRRTVRVDTARTVILDEADRMLD 164
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQ------DEENLQD- 308
F + V RL++ R ++++ M + + + + MD + + Q D + DE+N D
Sbjct: 165 MGFIHDVTRLLD--RMNKRKNLGMFSATISREV-MDIAWVYQRDAEEITVRADEQNKPDI 221
Query: 309 -EY---------------ISDEGNFE---------GDSD-------VEGLTEETKSGSIK 336
+Y I D GN++ G ++ + G+ E G I
Sbjct: 222 LQYRLEVSYDGKAEAIARIMDGGNYDRAMAFCNTKGSTERIAKFLQMRGMDAECIHGDIP 281
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPING 364
+K +V +++ +FVA + G
Sbjct: 282 QKKREQVMDKFRKGGLRVFVATDVAARG 309
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 378 DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV 437
DA+ I+ + P + + +EV+ D + +A+ R+ G R M F NT +
Sbjct: 205 DAEEITVRADEQNKPDILQYRLEVSYDGKAEAI-----ARIMDGGNYDRAMAFCNTKGST 259
Query: 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG--VFVCTDAAARGIDIPNVSHV 495
+ K L+ G++ C H D+ ++R + + F+ KGG VFV TD AARGID+ +V V
Sbjct: 260 ERIAKFLQMRGMDAECIHGDIPQKKREQVMDKFR-KGGLRVFVATDVAARGIDVDDVDVV 318
Query: 496 IQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
D D++HR+GRT RA ++G+ SL +
Sbjct: 319 FNCDVPDENQDYVHRIGRTGRAKRHGIAVSLIAD 352
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 23/198 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+++VT+ S GL ++RAL SG+ +P+ +QAA++ V +G DV+ AA+TG+GKT +
Sbjct: 14 ANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFS 73
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPL 197
+P+I L L D+ S S P R P +L+L P L +QV +
Sbjct: 74 LPIIHNL---LPDANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAKYTA--- 122
Query: 198 VRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +V DEAD
Sbjct: 123 LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRMLVLDEAD 178
Query: 252 MLLCGSFQNQVIRLINMF 269
+L F + R+IN+
Sbjct: 179 RMLDMGFLPDLQRIINLL 196
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT K+ A + L+ P ++ + N +++
Sbjct: 188 DLQRIINLLPAHRQTLLFSATFSPEIKRLAASYLRH--PQTIEVARSNATAEN--VRQVI 243
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + + AL+ +++R E G + +VF+N+ + + L+ GI H D
Sbjct: 244 YTVPDNHKQAALVHLLRQRAEQGLP-RQCIVFSNSKIGCSRLARALEREGINANAIHGDK 302
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 303 TQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 362
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 363 GASGDALSLFAPGDERLLADIEKLIKRNLP 392
>gi|365840688|ref|ZP_09381868.1| DEAD/DEAH box helicase [Anaeroglobus geminatus F0357]
gi|364560673|gb|EHM38599.1| DEAD/DEAH box helicase [Anaeroglobus geminatus F0357]
Length = 222
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 101/190 (53%), Gaps = 27/190 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ SLG++ L AL+ P+ VQ ++ L G+D+++ A+TG+GKT ++L+P+++
Sbjct: 4 TFTSLGITKELSDALKEQHINTPTTVQKQAIPAALKGRDLLVQAQTGTGKTLAFLLPVLQ 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
++ +++ ++ +L++ P L EQ+ +A +L+ G + +++
Sbjct: 64 RI------KKDTAGEQ--------ALIIAPTRELAEQIAAVAASLTPATGADI---LSLI 106
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG+ + +P V++ TP LL++ RR + G +YVV DEAD +L F
Sbjct: 107 GGKTIENQLQKLLCRPQVVIGTPGRLLDHC----RRNSLRLGGARYVVVDEADQMLAAGF 162
Query: 259 QNQVIRLINM 268
+V LI M
Sbjct: 163 LEEVDELIGM 172
>gi|336465803|gb|EGO53968.1| hypothetical protein NEUTE1DRAFT_148439 [Neurospora tetrasperma
FGSC 2508]
gi|350287366|gb|EGZ68613.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 676
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 18/183 (9%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
D ++T+ LGL RL++A+ F +P++VQ ++ L+G+DV+ A+TGSGKT +Y++
Sbjct: 92 DADLTFSDLGLDPRLVQAVAKQSFEKPTLVQRKAIPLALAGQDVLCKAKTGSGKTAAYVL 151
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSA-----DNGE 195
P++ + +PTP + +L+L P L +QV + +A SA
Sbjct: 152 PVLSGIL--------KRKATDPTPFTS-ALILVPTRELADQVHKAIDAFSAFCTKDIQSA 202
Query: 196 PLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
L V+ + PDVIVSTPA +NI+ + ++Y+V DEAD++L
Sbjct: 203 KLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALS----IAKLQYLVLDEADLVLS 258
Query: 256 GSF 258
+
Sbjct: 259 YGY 261
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
+RGID NV+ VI D TS+ ++HR+GRTARAG+ G+ S+
Sbjct: 449 SRGIDFKNVAAVINFDMPTSSSSYIHRIGRTARAGRAGIALSM 491
>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 538
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 27/193 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++ LG+ ++ +R L+ G P+ VQ S+ +L GKDV+ A+TG+GKT ++++P+++
Sbjct: 14 FQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQH 73
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-LVRAVAVC 204
+ D + P+A L++ P L Q+ A L+A GEP ++ +AV
Sbjct: 74 I------------DPKRAYPQA--LIIAPTRELALQITEEAKKLTA--GEPDGIKILAVY 117
Query: 205 GGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ G +I+ TP LL+++ RR +E GVK +V DEAD +L F
Sbjct: 118 GGQDVEKQLRKLEGGRQLIIGTPGRLLDHL---RRGTLELG-GVKQLVLDEADQMLHMGF 173
Query: 259 QNQVIRLINMFRF 271
++V LI+ +
Sbjct: 174 LDEVEALIHALPY 186
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 11/190 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT+P K+ AG + Q D + ++++ +E T ++ DAL
Sbjct: 188 RQTMLFSATMPAGVKQLAGNYMNQ---PVDIVIKGASPIPLEQIQQVVVECTDRSKQDAL 244
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++E F A ++F T + + L G + H DLS +R + F
Sbjct: 245 RAMIEEHNPFLA-----IIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRF 299
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+E K + V TD AARG+D+ V+HV D ++HR+GRT RAG G+ +
Sbjct: 300 REAKLQLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFA-- 357
Query: 530 SNRDLVDTIR 539
+ +DL D R
Sbjct: 358 AGKDLNDLQR 367
>gi|325093293|gb|EGC46603.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H88]
Length = 621
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 19/192 (9%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A + ++++L L RL++AL F +P+ +QA ++ L GKDV+ A+TGSGKT +YL
Sbjct: 17 AGKSSSFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYL 76
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
+P+++ + L N+ PT +L+L P L EQV R A SA +G+ VR
Sbjct: 77 LPVLQSI---LQQKMNN-----PTHKSISALILVPTRELAEQVHRTAILFSAFSGKD-VR 127
Query: 200 AVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+V + + + PD++VSTPA + N++ + R + ++V DEAD++
Sbjct: 128 SVNLTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSS---ALSLER-LTHLVIDEADLV 183
Query: 254 LCGSFQNQVIRL 265
L ++ + L
Sbjct: 184 LSYGYEEDMQSL 195
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID NV+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 392 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKSGMALSFVIPSDQ 440
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 23/198 (11%)
Query: 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139
A+++VT+ S GL ++RAL SG+ +P+ +QAA++ V +G DV+ AA+TG+GKT +
Sbjct: 9 ANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFS 68
Query: 140 VPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPL 197
+P+I L L D+ S S P R P +L+L P L +QV +
Sbjct: 69 LPIIHNL---LPDANTSAS-----PARHPVRALILTPTRELADQVYDNVAKYAKYTA--- 117
Query: 198 VRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251
+R+ V GG Q + + +++V+TP LL+++ ++R + V+ +V DEAD
Sbjct: 118 LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHV----QQRSVNLSQVRMLVLDEAD 173
Query: 252 MLLCGSFQNQVIRLINMF 269
+L F + R+IN+
Sbjct: 174 RMLDMGFLPDLQRIINLL 191
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 6/210 (2%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ +Q + +AT K+ A + L+ P ++ + N +++
Sbjct: 183 DLQRIINLLPAHRQTLLFSATFSPEIKRLAASYLRH--PQTIEVARSNATAEN--VRQVI 238
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
V + + AL+ +++R E G + +VF+N+ + + L+ GI H D
Sbjct: 239 YTVPDNHKQAALVHLLRQRAEQGLP-RQCIVFSNSKIGCSRLARALEREGINANAIHGDK 297
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+ ER +TL F++ V V TD AARG+DI + VI D +A D++HR+GRT RA
Sbjct: 298 TQTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRA 357
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547
G G SL+ + L+ I + K P
Sbjct: 358 GASGDALSLFAPGDERLLADIEKLIKRNLP 387
>gi|409041060|gb|EKM50546.1| hypothetical protein PHACADRAFT_263884 [Phanerochaete carnosa
HHB-10118-sp]
Length = 647
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTD 481
E T+VF T ++ L T I H D S ER L F+ + V V T
Sbjct: 434 EGGLTLVFVETKRMADMLSDFLYTNRIAATSIHGDRSQRERETALQTFRTGRTPVLVATA 493
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDT 537
AARG+DIPNV+HVI D + D++HR+GRT RAG G+ T+ + N RDL++
Sbjct: 494 VAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNVGISTAFFNRGNKNIVRDLIEL 553
Query: 538 IRRA 541
+R A
Sbjct: 554 LREA 557
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 24/183 (13%)
Query: 99 LENSGFGR---PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE---KLCTALGD 152
LEN G+ P+ VQ S+ V +D++ A+TGSGKT +L P++ K
Sbjct: 186 LENIGYAHYTTPTPVQKYSIPIVAESRDLMACAQTGSGKTGGFLFPILSASFKTGPLAPP 245
Query: 153 SENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI 211
+E N + P+ L+L P L Q+ A + VR V GG I
Sbjct: 246 AEAQNGGYGRSRKAYPTALILAPTRELVSQIHEEARKFCYRS---WVRPAVVYGGAD--I 300
Query: 212 GKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVI 263
+ D++ +TP L++ I+ R R+ ++Y+V DEAD +L F+ Q+
Sbjct: 301 NQQIRQAERGCDLLSATPGRLVDLIE---RGRISLAN-IRYLVLDEADRMLDMGFEPQIR 356
Query: 264 RLI 266
R++
Sbjct: 357 RIV 359
>gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
gi|74615933|sp|Q7S5R1.1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3
gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
Length = 614
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442
+GN N R+++K V + L E +KE + + R +VF V +
Sbjct: 409 NGNIELQANSRIEQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQ 468
Query: 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFA 501
L GI+ H DL ++R ++L F+ V V TD AARG+DIP V VI F
Sbjct: 469 FLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFP 528
Query: 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAAKLGQPV 548
+ D++HR+GRT RAG+ G +L+TE ++ LV+ I RAAK QPV
Sbjct: 529 LTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVN-ILRAAK--QPV 576
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161
+ + P+ +Q+AS LSG+DV+ AETGSGKT ++ +P +E L + NS
Sbjct: 197 AAYTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASR--PKPKFNSRDR 254
Query: 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG--------WPIGK 213
PRA +++ P L Q + L++ G + AV + GG +
Sbjct: 255 TAHPRA--VIVSPTRELAMQTHAALSGLASLVG---LSAVCIFGGSDKNEQRNLLYKNNG 309
Query: 214 PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
D+I +TP L + + + V + V DEAD +L F ++ I+LI
Sbjct: 310 VDIITATPGRLKDFLSEGSIS----LANVSFAVLDEADRMLDRGF-SEDIKLI 357
>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 408
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG--GVFVCT 480
ET R +VF T +AV ++ +L+ AGI C D+ ++R + L F KG V + T
Sbjct: 244 ETKRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFT-KGEVNVLLAT 302
Query: 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
D AARGID+ +++HVI D SA ++HR+GRT RAG G SL + +V I R
Sbjct: 303 DVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKIER 362
Query: 541 AAKLGQPV 548
+ QP+
Sbjct: 363 Y--MDQPL 368
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ ++ L L L+ +L+ G +P+ +Q ++ + +D++ A TG+GKT S+L+P +
Sbjct: 1 MQFEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPAL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ L D S + A L+L P L Q+ R A+ L++ E V +
Sbjct: 61 QHLI----DFPRRFSGQ------ARILILTPTRELASQIHRYASHLAS---ELDFNTVII 107
Query: 204 CGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + G D++V+TP L+ +D + E V+ +V DEAD +L
Sbjct: 108 TGGVPYGPQEDALKGNVDILVATPGRLMEYLDKGQFNAEE----VEMLVIDEADRMLDMG 163
Query: 258 FQNQV 262
F V
Sbjct: 164 FSAAV 168
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 410 LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469
L+ AV + E GAE R +VFA T + L+ +G H D S +R + L N
Sbjct: 233 LLHAVLD--EKGAE--RVIVFARTKNRTEECADELRRSGYSVESIHSDKSQGQRKRALDN 288
Query: 470 FQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
F+ K + V TD ARGID+P+V+HVI D D++HR+GRT RAG+ G S T
Sbjct: 289 FRRGKTSILVATDVLARGIDVPDVNHVINFDLPDMPEDYVHRIGRTGRAGEEGFAISFVT 348
Query: 529 -ESNRDLVDTIR 539
E++R L D R
Sbjct: 349 SETHRTLKDIER 360
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 33/198 (16%)
Query: 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTH 136
T FAD LGLS+ + A+E G+ +P+ VQ ++ VL G+D++ AA TG+GKT
Sbjct: 2 THFAD-------LGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTA 54
Query: 137 SYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANALSADNGE 195
++L+P++ L A G + RAP LV+ P L +Q+ R +S G
Sbjct: 55 AFLLPVLSMLPRARGRN------------RAPRVLVVSPTRELAQQIARTCMQISRKTGH 102
Query: 196 PLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
V GG + G DV+++TP L + + +R + + V+ +V DE
Sbjct: 103 ---FTTTVFGGTPYGPQIKELRGGTDVLIATPGRLKDLM----KRGVVDLSSVQTLVLDE 155
Query: 250 ADMLLCGSFQNQVIRLIN 267
AD +L F V +++
Sbjct: 156 ADRMLDMGFLPDVTTIVD 173
>gi|239610502|gb|EEQ87489.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ER-3]
Length = 628
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++L L RL++AL F +P+++QA ++ L GKDV+ A+TGSGKT +YL+P+++
Sbjct: 25 SFENLNLDPRLLQALTQQKFTKPTLIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPILQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-----LVR 199
+ +PT +L+L P L EQV + + SA G+ L +
Sbjct: 85 SIL--------QKKTNDPTHKAISTLILVPTRELAEQVHKTVTSFSAFAGKDIRSTNLTQ 136
Query: 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
V+ + PD+++STPA + NI+ ++ + ++V DEAD++L ++
Sbjct: 137 KVSDAVQRSILADLPDIVISTPARAVVNINSS----ALTLQHLTHLVIDEADLVLSYGYE 192
Query: 260 NQVIRL 265
+ L
Sbjct: 193 EDMQSL 198
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID +V+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 400 SRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMALSFVVPSDQ 448
>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
isolate TM7a]
Length = 477
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 10/207 (4%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D + + K+ +F +AT+P K A+ K+ P+ + ++
Sbjct: 163 EDIEAILEKTNDEKKMLFFSATIP----KAIMAIAKKFMPEHKLLKVAKKELTTNLTEQI 218
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+ EV + + +AL + +F +VF T V VT LK + C H D
Sbjct: 219 YYEVKQEDKFEALCRVLDYEQDFYG-----IVFCRTKSEVDDVTNKLKARNYDAECIHGD 273
Query: 458 LSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
++ R K L F++K + V TD AARGID+ N++HVI A ++HR+GRT R
Sbjct: 274 ITQALRQKALDLFKKKILTILVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGR 333
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AGQ G+ + T + I+R K
Sbjct: 334 AGQKGVAITFVTPREASKLAQIKRITK 360
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIA-AETGSGKTHSYLVPLIE 144
++ GLS ++ AL GF PS +Q + +L + +I A+TG+GKT ++ +P++E
Sbjct: 4 FEDFGLSIEMLNALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIPILE 63
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ +DK +L+L P L QV A+ + + GE ++ +AV
Sbjct: 64 TI----------EADK-----TVRALILAPTRELANQV---ADEIYSLKGEKDLKVLAVY 105
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG I K D++V TP +++ + R+++ V + Y V DEAD +L F
Sbjct: 106 GGASIENQIKKLKSGVDIVVGTPGRVMDLM----RKKILKVDKLDYFVLDEADEMLNMGF 161
>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 466
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T++SLGL +I+AL SG+ P+ VQA ++ + G+D++++++TGSGKT ++++P +
Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60
Query: 144 EKLCTALGD-------------SENSNSDKEPTPPRAPS-LVLCPNVVLCEQVVRMANAL 189
K + GD S S D+ P P LVL P L QV +
Sbjct: 61 HKFASE-GDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKY 119
Query: 190 SADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243
A V+AV++ GG +P P+++V+TP L+++++ +++F + ++
Sbjct: 120 GAFMKR--VKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESG---KIDFSQ-LQ 173
Query: 244 YVVFDEADMLLCGSFQNQVIRLI 266
+V DEAD +L F + + +++
Sbjct: 174 ILVLDEADRMLDMGFIDDIEKIV 196
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T + L AG H D+ R +TL + + V V TD AA
Sbjct: 270 QAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTLDGLRRGQIRVLVATDVAA 329
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RGID+P ++HV+ D D++HR+GRT RAG+ G+ SL + V I R K
Sbjct: 330 RGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRAGRNGIAVSLVNHAESMNVKRIERFIKQ 389
Query: 545 GQPV 548
PV
Sbjct: 390 LIPV 393
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 10/206 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + + K ++Q + +AT+P N +K A LK D + +S H P + + +
Sbjct: 164 DIQSILKLVPENRQTLLFSATMPPNIQKLASQFLK----DPEHVSVIPKHVSAPLIDQAY 219
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
IEV + +AL RL +VF T V + + L+ G H DL
Sbjct: 220 IEVPERQKFEAL-----SRLLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDL 274
Query: 459 SLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
S +R + F++ V V TD AARG+D+ V+HV+ D ++HR+GRT RA
Sbjct: 275 SQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRA 334
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAK 543
G+ G S T D + I R +
Sbjct: 335 GKEGTAWSFVTPREMDHLYFIERVTR 360
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ GL R+++A+ GF + +Q+ S+ L+GKD++ A+TG+GKT ++ +PLI K
Sbjct: 4 FADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLIHK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+ KE R +LV+ P L QV LS G +R++A+ G
Sbjct: 64 IA------------KEEE--RIVALVMTPTRELAIQVAEEIGKLSRFKG---IRSLAIYG 106
Query: 206 GQ--GWPI----GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GQ G I KP +I+ TP LL++I+ K R + V+ VV DEAD +L F
Sbjct: 107 GQDIGRQIRALKKKPQIIIGTPGRLLDHINRKTIR----LDDVQTVVLDEADEMLDMGFM 162
Query: 260 NQVIRLINM 268
+ + ++ +
Sbjct: 163 DDIQSILKL 171
>gi|432895747|ref|XP_004076142.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Oryzias
latipes]
Length = 1043
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 19/194 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S +++ AL+ G+ +P+ +QA ++ ++SG+D++ A+TGSGKT ++L+P+
Sbjct: 368 TWVQCGVSMKILSALKKQGYDKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 427
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ D + P S+++ P L Q+ + S G +R V V
Sbjct: 428 HIM----DQRPLEESEGPI-----SVIMTPTRELALQITKECKKFSKALG---LRVVCVY 475
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R R YVV DEAD + F
Sbjct: 476 GGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRAT-YVVLDEADRMFDMGF 534
Query: 259 QNQVIRLINMFRFD 272
+ QV+R+++ R D
Sbjct: 535 EPQVMRIVDNVRPD 548
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +L + P + G + + +++ + +
Sbjct: 540 RIVDNVRPDRQTVMFSATFPRAMEALARRILSK--PIEVQVGGRSVVCSD--VEQHVLVI 595
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D + L+E + E G+ ++F + + + K L A C H +
Sbjct: 596 EEDQKFLKLLEILGHYQEKGS----VIIFVDKQEHADGLLKDLMKASYPCLSLHGGIDQY 651
Query: 462 ERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+R + +F K GV V T AARG+D+ + V+ + D++HR GRT RAG
Sbjct: 652 DRDSIINDF--KNGVCRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAG 709
Query: 519 QYGLVTSLYTESN-RDLVDTIRRAAKLGQPV 548
G + TE R D I+ G PV
Sbjct: 710 NKGYAYTFITEDQVRYAGDIIKGLELSGAPV 740
>gi|403727443|ref|ZP_10947652.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
gi|403203921|dbj|GAB91983.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
Length = 592
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 26/188 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L + DR+ +A+ + G+ PS +QAA++ P+L+G+DVV A+TG+GKT ++ +P++
Sbjct: 18 SFDDLHIDDRVRQAIADVGYETPSPIQAATIPPLLAGRDVVGLAQTGTGKTAAFAIPILS 77
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L S + P +LVL P L QV S+ P VR + +
Sbjct: 78 RLDI---------SQRHPQ-----ALVLAPTRELALQVAEAFGRYSSHM--PEVRVLPIY 121
Query: 205 GGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ + + VIV TP +++++D R + + Y+V DEAD +L F
Sbjct: 122 GGQSYGVQLAGLRRGAQVIVGTPGRVIDHLD----RGTLDISDLSYLVLDEADEMLTMGF 177
Query: 259 QNQVIRLI 266
V R++
Sbjct: 178 AEDVERIL 185
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ KQ +AT+P ++ A L P + N + ++
Sbjct: 179 EDVERILAETPDDKQVALFSATMPSAIRRLAQRYLHD--PQEITVKSKTATAQN--ITQR 234
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTM-VFANTVDAVYAVTKILKTAGIECYCYHK 456
+++V+ ++DAL ++ ET M VF T + + L++ G +
Sbjct: 235 YLQVSHQRKLDALTRFLE------VETFDAMIVFVRTKSGTEELAERLRSRGFSAVAING 288
Query: 457 DLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
D++ +R +T+ + + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 289 DMAQAQRERTINQLKSSQIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 348
Query: 516 RAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ G + R L+ I RA +
Sbjct: 349 RAGRSGNALLFVSPRERHLLRAIERATR 376
>gi|366999310|ref|XP_003684391.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
gi|357522687|emb|CCE61957.1| hypothetical protein TPHA_0B02850 [Tetrapisispora phaffii CBS 4417]
Length = 628
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVCTDAA 483
T++F T +T L H D + ER + L F KGG V V T A
Sbjct: 415 TLIFVETKRMADELTDFLIMQDFMATAIHGDRTQIERERALAAF--KGGRANVLVATAVA 472
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
ARG+DIPNV+HVI D T D++HR+GRT RAG G+ TS + NR++V
Sbjct: 473 ARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATSFFNRGNRNVV 524
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 32/193 (16%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L L+ + + F +P+ VQ SV V G+D++ A+TGSGKT +L P++
Sbjct: 162 LDSLLLENIHLARFTKPTPVQKYSVPIVAQGRDLMACAQTGSGKTGGFLFPVL------- 214
Query: 151 GDSENSNSDKEPTPP----------RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
S++ + P P +LVL P L Q+ A + VR
Sbjct: 215 --SQSFKNGPAPVPEDLKRSFLRKGNPTALVLAPTRELATQIYDEAKKFTY---RSWVRP 269
Query: 201 VAVCGGQ--GWPIGKP----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V + GG G I + D++V+TP L D R R+ VKY+V DEAD +L
Sbjct: 270 VVIYGGSDVGTQIRELERGCDLLVATPGRL---NDLLERGRVSLAN-VKYLVLDEADRML 325
Query: 255 CGSFQNQVIRLIN 267
F+ Q+ +++
Sbjct: 326 DMGFEPQIRHIVD 338
>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
Length = 413
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ L L +L++AL++ GF RP+ +QA + + G+D++ +A TG+GKT ++++PL++
Sbjct: 3 TFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPLLQ 62
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L ++P P RA L+L P L Q+ A AL+ G ++ + +
Sbjct: 63 HLI--------DFPRQKPGPARA--LILTPTRELAIQIADQARALAKYTG---LKIITIT 109
Query: 205 GGQGWP-----IGKP-DVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGS 257
GG + +GK D++V+TP L+ ++ +R F R ++ +V DEAD +L
Sbjct: 110 GGISYQEHAEILGKTQDIVVATPGRLMEYVEAER-----FDCRAIESLVLDEADRMLDMG 164
Query: 258 FQNQVIRLINMFRFDEKQL 276
F V RL + R+ ++ +
Sbjct: 165 FGPAVDRLSSECRWRKQSM 183
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERA 464
T +AL++++ + R ++F T + + A+ + L I+C ++ +R
Sbjct: 231 THKNALLKSI-----LTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRT 285
Query: 465 KTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV 523
+ F + V + TD AARGID+P++ HVI D A +LHR+GRTARAG+ G
Sbjct: 286 YAIERFTRGEINVLLATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNA 345
Query: 524 TSLYTESNRDLVDTIRRAAK 543
SL ++ ++D I R K
Sbjct: 346 ISLVEAHDQPMMDRICRYMK 365
>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 551
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ ++ + ++ ++F T +T+ L+ G H D ER L
Sbjct: 361 DRMIKHLEKMMD--NKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVL 418
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG G +
Sbjct: 419 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTF 478
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N RDLV+ +R A + P
Sbjct: 479 FTTDNSKQARDLVNVLREAKQEIDP 503
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 129 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 188
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P L V++ +S +R V
Sbjct: 189 HI----------NAQPLLAPGDGPIVLILAPTRELA---VQIQQEISKFGKSSRIRNTCV 235
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 236 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLEAGKTN----LRRVTYLVLDEADRMLD 289
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 290 MGFEPQIRKIIGQIRPDRQTL 310
>gi|146096170|ref|XP_001467723.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|398020594|ref|XP_003863460.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|322501693|emb|CBZ36774.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 614
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W+E +D + L+E +KE + R +VF + + L+ + I C H
Sbjct: 367 RWVE-DMDKR-GCLLEVLKEH-----QGERVLVFVEKKRDADYLERYLRQSRIPCSSIHG 419
Query: 457 DLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D ER + L F K GV V TD A+RG+DIPNV+ V+Q D ++ D++HR+GR
Sbjct: 420 DRVQREREEALDIF--KSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGR 477
Query: 514 TARAGQYGLVTSLYTESNRDLVDTI 538
T RAG+ G S + + NR++VD +
Sbjct: 478 TGRAGKRGTAISFFNDKNRNIVDDL 502
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ ++ L+ L + + +P+ VQ + VL+G D++ A+TGSGKT +YL+P I
Sbjct: 134 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 193
Query: 145 -KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L L ++ +NS P+ +LVL P L Q+ + G +R V V
Sbjct: 194 FMLVNNLNRAKPTNSQSAPS-----ALVLSPTRELSIQIYEEGRKFTYRTG---IRCVVV 245
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG------VKYVVFDEAD 251
GG Q + + ++V+TP L + F RG V+++V DEAD
Sbjct: 246 YGGADPRHQIHELTRGCGLLVATPGRLSD----------MFTRGYTRYSDVRFLVLDEAD 295
Query: 252 MLLCGSFQNQV 262
+L F+ Q+
Sbjct: 296 RMLDMGFEPQI 306
>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 369
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 27/189 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+ +K LGLSD LI+ L SG P+ +Q S+ + GKDV+ A TG+GKT ++L+PL+
Sbjct: 1 MNFKQLGLSDDLIKILNKSGIADPTPIQKQSIPKIRDGKDVIAEAATGTGKTLAFLLPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
E + NS S++ +L+L P L Q+ AN L N + + V
Sbjct: 61 ENI--------NSKSNE------IQALILTPTRELAIQITNEANKLKEFND---INILPV 103
Query: 204 CGGQ--GWPIGKPD----VIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG+ + K + +I++TP LL++++ R+ ++ + +K + DEAD +L
Sbjct: 104 YGGKDIASQLKKLNNNIHLIIATPGRLLDHLE---RKTIDLSK-LKTFILDEADQMLLMG 159
Query: 258 FQNQVIRLI 266
F+N+V +I
Sbjct: 160 FKNEVESII 168
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLK---QMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405
R KQ + +AT+ + KK A +K ++F D IS + + ++ +E T
Sbjct: 173 RKKQLLCFSATIDSSVKKLAYRYMKDPIEVFIKQDDISLDAI-------EQDIVETTDRK 225
Query: 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465
+ DAL + + E F A ++F T V + +L T C H D+ +R +
Sbjct: 226 KRDALCKVLDEDNPFMA-----IIFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRER 280
Query: 466 TLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
+ +F+ + + TD AARG+DI ++H+ D S ++HR+GRT RAG+ G
Sbjct: 281 IMKSFRNAEIQYLIATDVAARGLDINGITHIYNYDIPESVESYIHRIGRTGRAGESG 337
>gi|380090926|emb|CCC11459.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 610
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467
D +I+ +++ +E T++ ++F T +T+ L+ G H D ER L
Sbjct: 412 DRMIKHLEKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVL 471
Query: 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526
F+ K + V TD A+RGID+ N++HV+ D+ ++ D++HR+GRT RAG G +
Sbjct: 472 DQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 531
Query: 527 YTESN----RDLVDTIRRAAKLGQP 547
+T N R+LV ++ A + P
Sbjct: 532 FTTDNSKQARELVGVLQEAKQQIDP 556
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ G ++ ++ GF P+ +Q+ LSG+DVV AETGSGKT +Y +P I
Sbjct: 180 TFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIV 239
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ N+ P P L+L P E V++ +S +R V
Sbjct: 240 HI----------NAQPLLAPGDGPIVLILAPT---RELAVQIQQEISKFGKSSRIRNTCV 286
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG P G +V ++TP L++ ++ + +R V Y+V DEAD +L
Sbjct: 287 YGGV--PKGPQIRDLSRGVEVCIATPGRLIDMLESGKTN----LRRVTYLVLDEADRMLD 340
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F+ Q+ ++I R D + L
Sbjct: 341 MGFEPQIRKIIGQIRPDRQTL 361
>gi|407939753|ref|YP_006855394.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897547|gb|AFU46756.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 405
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ-MFPDADWISGNYLHFHNPRLKE 396
++ +RV +Q +F +AT P + A +L+ + + GN P +++
Sbjct: 147 EELQRVLALLPARRQNLFFSATFPAAVQALADGLLQNPVRVEVPHTLGN-----EPAIEQ 201
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+ I V + L VKE SR +VF T A V + L AGI +H
Sbjct: 202 RAIAVDGSRRTQLLRHLVKEH-----NWSRVLVFVATQYAAEHVAEKLYKAGIYATPFHG 256
Query: 457 DLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515
LS R + L F+ E+ V V TD AARGIDI + V+ D SAVD++HR+GRT
Sbjct: 257 GLSQGARNQVLQEFKDERWQVVVTTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTG 316
Query: 516 RAGQYGLVTSLYT 528
RAG+ G+ S T
Sbjct: 317 RAGESGMAVSFVT 329
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR 166
P+ +QA ++ +L G D++ AA+TGSGKT ++ AL + P R
Sbjct: 3 PTPIQAGAIPAILQGVDLLGAAQTGSGKTAAF----------ALPLLQQLQLSATGGPRR 52
Query: 167 APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI-----GKPDVIVSTP 221
+LVL P L QV + +L+ +PL A+ G P G D++V+TP
Sbjct: 53 VRALVLVPTRELAAQVGEVLRSLAQHLQQPLKIAIVFGGVSINPQMLGLRGGADIVVATP 112
Query: 222 AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269
LL+ +D R + V ++V DEAD LL F ++ R++ +
Sbjct: 113 GRLLDLVDHNALR----LSAVAHLVLDEADRLLDLGFAEELQRVLALL 156
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D R++ +Q +F +AT+P + + A A+L+ D ++ + R++++
Sbjct: 175 DIRKIVAKLPIKRQTLFFSATMPKDIAELADAMLR----DPARVAVTPVSSTVERIQQRI 230
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
I+V + L + +K+ +R +VF T V K L+ AGI H +
Sbjct: 231 IQVDFSAKPALLAKLLKDE-----PVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNK 285
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S R +TL F+ G + V TD AARGID+ ++HVI D ++HR+GRTAR
Sbjct: 286 SQNHRERTLAQFR-TGEIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTAR 344
Query: 517 AGQYGLVTSL 526
AG G SL
Sbjct: 345 AGAEGTAISL 354
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ GL++ + RAL + P+ +QA ++ L+G+DVV A+TG+GKT S+ +P++
Sbjct: 8 TSFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPIL 67
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L EN +P P LVL P L Q++ NA +R +
Sbjct: 68 HRLL------ENR---IKPQPKTTRVLVLSPTRELSGQILDSFNAYGRH-----IRLSST 113
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
G P+G+ +V+V+TP LL+ + + + V+++V DEAD +L
Sbjct: 114 LAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNGLK----LGSVEFLVLDEADRMLD 169
Query: 256 GSFQNQVIRLINMFRFDEKQL 276
F N + +++ + L
Sbjct: 170 MGFINDIRKIVAKLPIKRQTL 190
>gi|389594304|ref|XP_001685353.2| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 615
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456
+W+E +D + L+E +KE + R +VF + + L+ + I C H
Sbjct: 369 RWVE-DMDKR-GCLLEVLKEH-----QGERVLVFVEKKRDADYLERYLRQSRIPCSSIHG 421
Query: 457 DLSLEERAKTLVNFQEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
D ER + L F K GV V TD A+RG+DIPNV+ V+Q D ++ D++HR+GR
Sbjct: 422 DRVQREREEALDIF--KSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGR 479
Query: 514 TARAGQYGLVTSLYTESNRDLVDTI 538
T RAG+ G S + + NR++VD +
Sbjct: 480 TGRAGKRGTAISFFNDKNRNIVDDL 504
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ ++ L+ L + + +P+ VQ + VL+G D++ A+TGSGKT +YL+P I
Sbjct: 136 SFATMALAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAIN 195
Query: 145 -KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
L L ++ +NS P+ +LVL P L Q+ + G R V V
Sbjct: 196 FMLVNNLNRAKPTNSQAAPS-----ALVLSPTRELSIQIYEEGRKFTYRTG---FRCVVV 247
Query: 204 CGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRG------VKYVVFDEAD 251
GG Q + + ++V+TP L + F RG V+++V DEAD
Sbjct: 248 YGGADPRHQIHELTRGCGLLVATPGRLSD----------MFTRGYTRYSDVRFLVLDEAD 297
Query: 252 MLLCGSFQNQV 262
+L F+ Q+
Sbjct: 298 RMLDMGFEPQI 308
>gi|389876606|ref|YP_006370171.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388527390|gb|AFK52587.1| DEAD/DEAH box helicase domain-containing protein [Tistrella mobilis
KA081020-065]
Length = 528
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 10/209 (4%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
RR+ +Q +F +AT+P K GA+ +M D +S + R++++ +
Sbjct: 172 RRILAKLPTRRQSLFFSATMP----KEIGALAGEMLRDPIEVSVTPVATTAERVEQRVVR 227
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
+ + LIE ++ R +VF T V L+ AG+ H + S
Sbjct: 228 IEPARKRGVLIELLES-----EGVHRALVFTRTKRGADRVAHDLEVAGLPAAAIHGNKSQ 282
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R + L F++ + + V TD AARGID+ VSHV + ++HR+GRTARAG
Sbjct: 283 SQRERALGGFRDGRVRILVATDIAARGIDVSGVSHVFNYELPDVPESYVHRIGRTARAGA 342
Query: 520 YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
G+ +L + L+ I R + P+
Sbjct: 343 EGIAITLCADDELGLLRDIERLTRQTLPI 371
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 33/193 (17%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LGLS+ L+RAL+ +G+ P+ +Q ++ +++G+D++ A+TG+GKT ++ +P++ +
Sbjct: 4 FSELGLSETLLRALDQAGYVTPTPIQEQAIPHLVAGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV------------RMANALSADN 193
+ D +N P R L+L P L Q+ +A + +
Sbjct: 64 IAA---DRNRAN-----MPGRTRCLILAPTRELAAQIADNIKTYARHMRVHVAVVVGGVS 115
Query: 194 GEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
P +RA+A +G D++V+TP L++++D ++ R + VV DEAD +
Sbjct: 116 AGPQIRAIA----RGL-----DILVATPGRLVDHLDSG---VLKLDR-TEVVVLDEADHM 162
Query: 254 LCGSFQNQVIRLI 266
L F + R++
Sbjct: 163 LDLGFIIPIRRIL 175
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 111/220 (50%), Gaps = 26/220 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L LI+A +N + +P+ +Q+ ++ P L G D++ A+TGSGKT ++ +P++
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L D+EP + +L P L +Q+ ++L + G VR+ +
Sbjct: 184 RLW----------HDQEP----YYACILAPTRELAQQIKETFDSLGSLMG---VRSTCIV 226
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + KP +I++TP L+++++ + + R +K++V DEAD LL F
Sbjct: 227 GGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSL---RKLKFLVMDEADRLLDMEF 283
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ R++ + E+ + + K ++ +SLT P
Sbjct: 284 GPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNP 323
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H DL+ +R L F+ K + V TD AARG+DIP+V V+ D + ++HRVGR
Sbjct: 394 HGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGR 453
Query: 514 TARAGQYGLVTSLYTESNRDLV 535
TARAG+ G SL ++ + +L+
Sbjct: 454 TARAGRSGKSISLVSQYDLELI 475
>gi|358366421|dbj|GAA83042.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 934
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 39/236 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
++++GL+ L++A+ GF P+ +Q ++ ++ +DVV A TGSGKT ++++P+I+K
Sbjct: 95 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQK 154
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + T A L+L P+ L Q +++ L +++V + G
Sbjct: 155 LKS------------HSTQVGARGLILSPSRELALQTLKVVKELGKGTD---LKSVLLVG 199
Query: 206 GQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF-VRGVKYVVFDEADMLLCGSF 258
G G PD++++TP L+ + M + ++YVVFDEAD L F
Sbjct: 200 GDSLEEQFSMMAGNPDIVIATPGRFLH-----LKVEMHLDLSSIRYVVFDEADRLFEMGF 254
Query: 259 QNQVIRLIN---------MFRFD-EKQLSRMNESGVEKP--LEMDNSSLTQPDLQD 302
Q+ +++ +F K L +G+++P + +D S PDLQ+
Sbjct: 255 AAQLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQN 310
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAAR 485
T++FA T V + +LK AG + L R + NF+ + V TD AAR
Sbjct: 380 TIIFAATKHHVDYLYSLLKEAGFATSYAYGSLDQTARKIQVHNFRTGITNILVVTDVAAR 439
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531
GIDIP +++VI DF + A F+HRVGRTARAG+ G SL +S+
Sbjct: 440 GIDIPILANVINYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSD 485
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 112/210 (53%), Gaps = 23/210 (10%)
Query: 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGK 134
SDT T+ GL+ +++A++ SG+ P+ +QA ++ VL+G+DV+ AA+TG+GK
Sbjct: 2 SDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGK 61
Query: 135 THSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSAD 192
T S+ +P+I++L ++ +P R P +L+L P L +QV A +
Sbjct: 62 TASFSLPIIQRLL--------PQANTSASPARHPVRALILTPTRELADQVAANVQAYAKH 113
Query: 193 NGEPLVRAVAVCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246
+R+ V GG Q + + +++++TP LL+++ +++ + V+ +V
Sbjct: 114 TA---LRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHV----QQKTANLGQVQMLV 166
Query: 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQL 276
DEAD +L F + R++N+ + + L
Sbjct: 167 LDEADRMLDMGFLPDLQRILNLLPKERQTL 196
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + +Q + +AT KK A L+ P ++ + N + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRN--PQTIEVARSNSTATN--VTQVV 236
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV + A+++ ++ER + +VF N+ + + L+ G+ H D
Sbjct: 237 YEVAEGDKTGAVVQLIRER-----GLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDR 291
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
S ER + L F+ +G V V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 292 SQSERMQALDAFK-RGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 350
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG G SL + + R + I + K
Sbjct: 351 AGASGDALSLCSPNERKQLADIEKLIK 377
>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
Length = 665
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTD 481
E T+VF T + L G H D S ER K L F+ + V T
Sbjct: 442 ENGLTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATA 501
Query: 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVD-TIRR 540
AARG+DIPNV HVI D + D++HR+GRT RAG G+ TS + N+++V I
Sbjct: 502 VAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGRAGNVGIATSFFNRGNKNVVKGLIEI 561
Query: 541 AAKLGQPV 548
++ QP+
Sbjct: 562 LSEANQPI 569
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 36/194 (18%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ + S F +P+ VQ SV V +G+D++ A+TGSGKT +L P++
Sbjct: 193 LDELLVENITLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVL------- 245
Query: 151 GDSENSNSDKEPTPPRAPS----------LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
SE+ + P P + LV+ P L Q+ + S + VR
Sbjct: 246 --SESYLNGPAPVPETTGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRS---WVRP 300
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V GG IG+ D++V+TP L + ++ R + +KY+V DEAD
Sbjct: 301 CVVYGGAD--IGQQMRNLDRGCDLLVATPGRLKDLLE----RGKVSLANIKYLVLDEADR 354
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ ++
Sbjct: 355 MLDMGFEPQIRHIV 368
>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Query: 399 IEVTVDTQ-VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+EV +D + LI+ +KE ++ SR ++F T VT+ L+ G H D
Sbjct: 291 VEVMMDLEKYKRLIKLLKEVMD----GSRILIFMETKKGCDQVTRQLRMDGWAALSIHGD 346
Query: 458 LSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ER L F+ + + TD AARG+D+ ++ V+ DF +S D++HR+GRT R
Sbjct: 347 KNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGR 406
Query: 517 AGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
AG G + +TESN RDL+ ++ A ++ P
Sbjct: 407 AGARGTALTFFTESNAKFARDLIKILQEAGQIVPP 441
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 26/192 (13%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
D ++ + GF P+ +QA L G+D++ AETGSGKT +YL+P
Sbjct: 77 DYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLP---AFVHVAAQ 133
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG 212
+ D LVL P L Q+ A + +R+ + GG P G
Sbjct: 134 PRLVHGDGPIV------LVLAPTRELAVQIQEEALKFGSKAN---IRSTCIYGGA--PKG 182
Query: 213 KP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264
+++++TP L++ + + +R V Y+V DEAD +L F+ Q+ +
Sbjct: 183 PQIRDLQRGVEIVIATPGRLIDMLGAQHVN----LRRVTYLVLDEADRMLDMGFEPQIRK 238
Query: 265 LINMFRFDEKQL 276
+++ R D + L
Sbjct: 239 IVSQIRPDRQTL 250
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 102/193 (52%), Gaps = 23/193 (11%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
D +K G +++ + N+G+ + +QA S P+L G+DV+ AA+TG+GKT ++ +P
Sbjct: 2 DKKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLP 61
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAP--SLVLCPNVVLCEQVVRMANALSADNGEPLVR 199
L+ ++ S +P + P LVL P L EQ+ + N ++ +G PL R
Sbjct: 62 LLNRMIPKASFST--------SPAKHPVRMLVLTPTRELAEQISK--NVIAYADGLPL-R 110
Query: 200 AVAVCGGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253
+ GG + K D++++TP LL++++ +R + V++++ DEAD +
Sbjct: 111 TSLIYGGVDFNAQKHELMRGADIVIATPGRLLDHVE----QRTINLNQVEFLILDEADRM 166
Query: 254 LCGSFQNQVIRLI 266
L F +++++
Sbjct: 167 LDMGFMLDLLKIL 179
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F+N + + L + H D + ER K L F+ K + V TD AARG
Sbjct: 254 IIFSNRKITCKNLERYLNNLDLSAQSLHGDKTQSERTKALNLFKSSKCNILVATDVAARG 313
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD-------LVDTIR 539
+DI +V VI + ++ D++HR+GRT RAG+ G+ S+Y+ ++ L+ T
Sbjct: 314 LDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYSSDEKESLHEIETLIGTKF 373
Query: 540 RAAKLGQP 547
R+ KL P
Sbjct: 374 RSTKLSIP 381
>gi|414591873|tpg|DAA42444.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414591874|tpg|DAA42445.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 647
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG-VFVCTDAAAR 485
T+VF T A+ L G H D + +ER L +F+ + V TD AAR
Sbjct: 437 TLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSFKSGATPILVATDVAAR 496
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN----RDLVDTIRRA 541
G+DIP+V+HVI D D++HR+GRT RAG+ GL T+ + ESN R L D ++ A
Sbjct: 497 GLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTTLARPLSDLMKEA 556
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 23/202 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ + L D L + + +P+ VQ ++ ++G+D++ A+TGSGKT ++ P+I
Sbjct: 175 TFAEIDLGDALNDNIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 234
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + + S S + P +L+L P L Q+ A + G VR V
Sbjct: 235 GILKSPKPHQRSRSTRTACP---LALILSPTRELSVQIHEEARKFAYQTG---VRVVVAY 288
Query: 205 GGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GG PI +++V+TP L++ ++ R R+ ++ +KY+ DEAD +L
Sbjct: 289 GGA--PITNQLRELERGVEILVATPGRLMDLLE---RARVS-LQMIKYLALDEADRMLDM 342
Query: 257 SFQNQVIRLI---NMFRFDEKQ 275
F+ Q+ +++ +M + E+Q
Sbjct: 343 GFEPQIRKIVEGMDMPQRGERQ 364
>gi|195568017|ref|XP_002107552.1| GD15498 [Drosophila simulans]
gi|194204962|gb|EDX18538.1| GD15498 [Drosophila simulans]
Length = 557
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
V + L L R+++A+ G+ +P+++Q+ ++ +L GKDVV+ A TGSGKT +Y +PLI
Sbjct: 9 VQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+K+ NS + ++VL P LC Q ++ L G+ +VR +
Sbjct: 69 QKIL---------NSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGK-VVRVADI 118
Query: 204 CGGQGWPIGK-------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+ + PD++V+TPA LL + R + ++ V+ +V DEAD++
Sbjct: 119 ADSSNDTVTQRHALSENPDIVVATPANLLAYAEA---RGVVDLKHVETLVVDEADLVFAY 175
Query: 257 SFQNQVIRLINMF 269
++ RLI
Sbjct: 176 GYEKDFKRLIKHL 188
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 40/230 (17%)
Query: 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ----MFPDADWISGNYLHFHNP 392
+KD++R+ K+ Q + V+ATL + + G LK + + + + L H
Sbjct: 178 EKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLKNPVTLKLEEPELVPQDQL-THQR 236
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
L E+ + + L +K RL G ++++F N++D Y V L+ GI
Sbjct: 237 ILAEE------NDKPAILYALLKLRLIRG----KSIIFVNSIDRCYKVRLFLEQFGIRAC 286
Query: 453 CYHKDLSLEERAKTLVNFQEKG--GVFVCTD----------------------AAARGID 488
+ +L R T+ F KG + + +D +A+RGID
Sbjct: 287 VLNSELPANIRIHTISQFN-KGTYNIIIASDEHHMEKPGGTNRKSPRSGDMESSASRGID 345
Query: 489 IPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
V++VI DF ++HR GRTAR G V S + + D +
Sbjct: 346 FQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSTKEAKVNDLV 395
>gi|225456912|ref|XP_002277894.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Vitis
vinifera]
Length = 611
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 396 EKWIEVTVDTQ-VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCY 454
++ +EV +T+ + LI +KE ++ SR ++F T VT+ ++ G
Sbjct: 409 QQVVEVVTETEKYNRLIRLLKEVMD----GSRILIFMETKKGCDQVTRQMRMDGWPSLSI 464
Query: 455 HKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513
H D + ER L F+ + + TD AARG+D+ ++ VI DF +S D++HR+GR
Sbjct: 465 HGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGR 524
Query: 514 TARAGQYGLVTSLYTESN----RDLVDTIRRAAKLGQP 547
T RAG G + +T SN RDL+ ++ A ++ P
Sbjct: 525 TGRAGAKGTAITFFTHSNAKFARDLIKILQEAGQVVSP 562
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 32/185 (17%)
Query: 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162
GF P+ +QA L G+D++ AETGSGKT +YL+P + + +P
Sbjct: 208 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA------------QP 255
Query: 163 TPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP----- 214
R LVL P L Q+ A + +R+ + GG P G
Sbjct: 256 PLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTK---IRSTCIYGGA--PKGPQIRDLQ 310
Query: 215 ---DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271
+++++TP L++ ++ + +R V Y+V DEAD +L F+ Q+ ++I+ R
Sbjct: 311 RGVEIVIATPGRLIDMLEAQHTN----LRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 366
Query: 272 DEKQL 276
D + L
Sbjct: 367 DRQTL 371
>gi|395499060|ref|ZP_10430639.1| putative ATP-dependent RNA helicase [Pseudomonas sp. PAMC 25886]
Length = 443
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 27/199 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ +LGL + L+RALE G+ P+ VQA ++ VL+G+D++ AA+TG+GKT + VPL+
Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
+ L T G ++NS + +L+LCP L EQV +A A+ + L + A
Sbjct: 61 Q-LLTMEGPKVSANSVR--------ALILCPTRELAEQV----HASVAEYAQNLPLTTYA 107
Query: 203 VCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG Q + K DV+V+TP L ID R+ ++ + ++ +V DEAD +L
Sbjct: 108 VYGGVSINPQMMKLRKGVDVLVATPGRL---IDLFRQNALKLNQ-LQTLVLDEADRMLDL 163
Query: 257 SFQNQVIRLINMFRFDEKQ 275
F + L N++R K+
Sbjct: 164 GFSEE---LANIYRMLPKK 179
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAA 484
+ +VFA T + V A+ + L+ GI H D R + L F+ + V TD AA
Sbjct: 246 QVLVFAKTRNGVDALVEKLQGLGINADGIHGDKPQATRQRALDRFKSSDVQILVATDVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DI ++ V+ D A D++HR+GRT RAG G SL +++ I
Sbjct: 306 RGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++K LG+ D L A E+ G+ P+ +QA S+ L G+DV+ AETGSGKT ++ +P+++
Sbjct: 47 SFKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQ 106
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
L DK P LVL P L Q+ AL + VR +
Sbjct: 107 ALM-----------DK---PQSMFGLVLAPTRELAYQISEQVEALGSLIS---VRCAVIV 149
Query: 205 GG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
GG Q +G KP +IV+TP LL++++ + + R +KY+V DEAD LL
Sbjct: 150 GGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSL---RNLKYLVMDEADRLL 202
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF TV+ + +L+ G H LS R L F+ + + V TD AARG
Sbjct: 290 IVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARG 349
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+DIP+V V+ D + + ++HRVGRTARAG+ G SL T+
Sbjct: 350 LDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQ 392
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 10/200 (5%)
Query: 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD 408
+++Q + +AT+P K A K+ ++IS +++K + V +
Sbjct: 175 KTRQTLLFSATIPDEIKTLA----KKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQA 230
Query: 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468
LIE +KE + A ++F T V + + L + G C H DLS +R K +
Sbjct: 231 TLIEMIKEYRPYLA-----VIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMK 285
Query: 469 NFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527
F++ + + + TD AARG+D+ ++HV D A ++HR+GRT RAG+ GL + Y
Sbjct: 286 RFRDAEFQLLIATDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFY 345
Query: 528 TESNRDLVDTIRRAAKLGQP 547
+ +D + I + + P
Sbjct: 346 SPQQKDQLAEIEKELNIRLP 365
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 32/190 (16%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+KSLG+S+ +I L+ P+ +Q ++ V+ GKDV+ A+TG+GKT ++++P+IE
Sbjct: 4 FKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIEN 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
++ S TP R +L + V +++R +S + V G
Sbjct: 64 FDF----NQQSIQALIVTPTRELALQITEEV---RKLIRHIEGIS---------VLPVYG 107
Query: 206 GQGWP---------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
GQ +G ++V TP +L++I R + + +V DEAD +L
Sbjct: 108 GQDVEKQLNKLRKNVG---IVVGTPGRILDHIG----RGTIDLSELNSLVLDEADQMLHI 160
Query: 257 SFQNQVIRLI 266
F +V +I
Sbjct: 161 GFLKEVEMII 170
>gi|134254726|gb|ABO65093.1| DEAD box polypeptide 47 isoform 1 variant [Homo sapiens]
Length = 182
Score = 85.5 bits (210), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLV 140
++ T+K LG++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +
Sbjct: 10 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 69
Query: 141 PLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
P++ L TP R +LVL P L Q+ AL + G V++
Sbjct: 70 PILNALLE--------------TPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQS 112
Query: 201 VAVCGG-----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG Q + KP +I++TP L+++++ + + R +KY+V DEAD +L
Sbjct: 113 AVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL---RALKYLVMDEADRIL 169
Query: 255 CGSFQNQVIRLI 266
F+ +V +++
Sbjct: 170 NMDFETEVDKIL 181
>gi|403388886|ref|ZP_10930943.1| ATP-dependent RNA helicase DeaD [Clostridium sp. JC122]
Length = 499
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 30/230 (13%)
Query: 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVP 141
+N+ ++ L L + +++AL+N GF +PS VQ ++ +L G+D+++ ++TGSGKT S+ +P
Sbjct: 21 ENILFEDLNLDEHILKALKNLGFNKPSQVQEKAIPYLLRGEDIIVKSQTGSGKTASFGIP 80
Query: 142 LIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201
L EK ENS SLVL P L QV +S VRA
Sbjct: 81 LCEKTQV-----ENS---------VVQSLVLVPTRELAMQV---KEDISNIGRLKKVRAA 123
Query: 202 AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
A+ G Q + + +++ TP ++++I+ R + + +VV DEAD +L
Sbjct: 124 AIFGKQPFNDQIRELKQRVHIVIGTPGRVIDHIN----RGTLKIDNINFVVIDEADKMLN 179
Query: 256 GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLE-MDNSSLTQPDLQDEE 304
F +Q+ ++N +++++ + + +EK +E + + + P++ + E
Sbjct: 180 MGFIDQIKEILN--ELPKERVTSLFSATIEKEIENLSKNYMKSPEVLNVE 227
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF NT D V V ++K G H D+ ER + + F+ + + V TD AARG
Sbjct: 265 IVFCNTKDKVKYVYGLMKREGFLVEELHGDMLQNERMQVMEKFKNREFKILVATDIAARG 324
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521
I + +++HV + ++HR+GRT RAG+ G
Sbjct: 325 IHVDSITHVFNYEVPMEKESYVHRIGRTGRAGKEG 359
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 26/220 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L LI A EN + +P+ +QA ++ P L GKD++ A+TGSGKT ++ +P++
Sbjct: 106 SFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILN 165
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L D++P + VL P L +Q+ ++L G VR +
Sbjct: 166 QLW----------HDQQPY----YACVLAPTRELAQQIKETFDSLGGAMG---VRTTCIV 208
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + KP +I++TP L+++++ + M R +K++V DEAD LL F
Sbjct: 209 GGMNMIDQARDLMRKPHIIIATPGRLMDHLENTKGFSM---RKLKFLVMDEADRLLDMEF 265
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ R++ + + + + K ++ +SLT P
Sbjct: 266 GPVLDRILKIIPTQGRTTYLFSATMTSKIDKLQRASLTNP 305
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVF 477
EF +T+ +VF T + + H DL+ +R L F+ + +
Sbjct: 342 EFLGKTA--IVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSIL 399
Query: 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
V TD AARG+DIP+V VI D + ++HRVGRTARAG+ G SL ++ + +L+
Sbjct: 400 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 457
>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
Length = 444
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ +LGL + L+RALE G+ P+ VQA ++ VL+G+D++ AA+TG+GKT + VPL+
Sbjct: 1 MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
+ L T G +NS A +L+LCP L EQV +A A+ + L + A
Sbjct: 61 QLLTTE-GPKVAANS--------ARALILCPTRELAEQV----HASVAEYAQHLPLTTYA 107
Query: 203 VCGG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V GG Q + K D++V+TP L ID R+ ++ + ++ +V DEAD +L
Sbjct: 108 VYGGVSINPQMMKLRKGVDILVATPGRL---IDLFRQNALKLNQ-LQTLVLDEADRMLDL 163
Query: 257 SFQNQVIRLINMFRFDEKQ 275
F + L N++R K+
Sbjct: 164 GFSEE---LANIYRMLPKK 179
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VFA T + V A+ L+ GI H D R + L F+ + + V TD AA
Sbjct: 246 QVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATDVAA 305
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
RG+DI ++ V+ D A D++HR+GRT RAG G SL +++ I
Sbjct: 306 RGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359
>gi|213406505|ref|XP_002174024.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
gi|212002071|gb|EEB07731.1| ATP-dependent RNA helicase mak5 [Schizosaccharomyces japonicus
yFS275]
Length = 695
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 21/169 (12%)
Query: 363 NGKKTAGAVLKQMFPDADWISGNYLHF-HNPRLKEKWIEVTVDTQV-DALIEAVKERLEF 420
N K++ G +LKQ +HF P + E +V T+V + L+E + + +
Sbjct: 370 NDKQSMGYLLKQ------------IHFLGRPEFLDANPETSVATKVTEGLVECIPSQKDL 417
Query: 421 GAET------SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473
+T+VFAN V+ V VT +LK G++ + + + ++R + L F+ EK
Sbjct: 418 YLYYFLLRYPGKTIVFANGVEDVKRVTPLLKELGVKAHSLYAQMEQKKRLQALERFKSEK 477
Query: 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL 522
+ + TD AARGIDIP+V HVI +A ++HR GRTAR + GL
Sbjct: 478 DAILIATDVAARGIDIPSVKHVIHYHVPHTADMYIHRSGRTARGTEQGL 526
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKT 135
D A D W ++ LS ++ L GF P+ +Q + ++G DV+ AETGSGKT
Sbjct: 155 DEANAVDVSKWSNIPLSAAILGRLSKLGFSAPTHIQELVLPVAMAGSDVIGKAETGSGKT 214
Query: 136 HSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195
++ +P++E + +L++ P L +Q+ N L N
Sbjct: 215 LAFGIPILEHCLRNINKG-------------IQALIMAPTRELAQQIY---NHLEQCNPS 258
Query: 196 PLVRAVAVCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
+ V V GG Q KP +++ TP L + I + E + VK +V DE
Sbjct: 259 TDIHIVTVTGGLAIQKQQRLLAKKPSIVIGTPGRLWSVISSQGFD--EEFKNVKMLVLDE 316
Query: 250 ADMLLCGSFQNQVIRLINMF 269
AD LL + ++ +I++
Sbjct: 317 ADRLLQKNHFEELHNIIDLL 336
>gi|355575789|ref|ZP_09045162.1| hypothetical protein HMPREF1008_01139 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817005|gb|EHF01515.1| hypothetical protein HMPREF1008_01139 [Olsenella sp. oral taxon 809
str. F0356]
Length = 523
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDA 482
+ R +VF + + L+ AG+ C H + S +R + L NF++ + V V TD
Sbjct: 261 SRRVIVFCRGKHRADGICRKLRKAGVLCAPIHGNRSQNQRERALANFRDGQVDVLVATDV 320
Query: 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR-DLVDT 537
ARGIDIP+VS+V+ D A D++HR+GRT RAG+ G S TE + DL DT
Sbjct: 321 LARGIDIPDVSYVVNFDVPGDAEDYIHRIGRTGRAGESGWALSFVTEDDYLDLRDT 376
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 40/222 (18%)
Query: 51 NQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIV 110
NQ GR RG AA V D +G + LGLS R + A+E G+ P+ V
Sbjct: 3 NQNGGRSGRGMAA---VREDSDG------------FGGLGLSKRALAAVEELGYDEPTPV 47
Query: 111 QAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170
Q+ ++ V++GKDV+ AA+TG+GKT ++L+P ++ L A G E L
Sbjct: 48 QSLAIPQVIAGKDVMAAAQTGTGKTAAFLLPTLDGLGHA-GKGEGPL-----------ML 95
Query: 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKP------DVIVSTPAAL 224
V+ P L +Q+ A + G R V + GG G+ + D++V+TP L
Sbjct: 96 VVTPTRELAQQIEDAAELICRHTGH---RTVVLVGGVGYEPQRQALRRGCDLLVATPGRL 152
Query: 225 LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266
+ ++ + + V+ +V DEAD +L F + R++
Sbjct: 153 QDLMN----QHEADLSSVRVLVLDEADRMLDMGFLPDMRRIV 190
>gi|154281927|ref|XP_001541776.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
gi|160380634|sp|A6R2L6.1|DBP9_AJECN RecName: Full=ATP-dependent RNA helicase DBP9
gi|150411955|gb|EDN07343.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
Length = 625
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 19/187 (10%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++++L L RL++AL F +P+ +QA ++ L GKDV+ A+TGSGKT +YL+P+++
Sbjct: 25 SFETLKLDPRLLQALTQQKFTKPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQ 84
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L N+ P +L+L P L EQV R A + SA +G+ VR+V +
Sbjct: 85 SI---LQQKRNT-----PAHKSISALILVPTRELAEQVHRTAISFSAFSGKH-VRSVNLT 135
Query: 205 GGQGWPIGK------PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
+ + PD++VSTPA + N++ + R + ++V DEAD++L +
Sbjct: 136 QKVSDAVQRSLLADLPDIVVSTPARAVANVNSS---ALSLER-LTHLVIDEADLVLSYGY 191
Query: 259 QNQVIRL 265
+ + L
Sbjct: 192 EEDMQSL 198
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532
+RGID NV+ V+ D T++ + HR+GRT RAG+ G+ S S++
Sbjct: 396 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQ 444
>gi|403216375|emb|CCK70872.1| hypothetical protein KNAG_0F02050 [Kazachstania naganishii CBS
8797]
Length = 533
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402
+R+ +Q + AT P ++ A + Q P I N R+K+ +EV
Sbjct: 290 IRETAPHGRQTLMFTATWPKEVRELAATFMNQ--PVKVSIGNRDELSANKRIKQ-IVEVV 346
Query: 403 VDTQVD-ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D L++ +K+ + + ++FA V + LK G H DL+ +
Sbjct: 347 EQRSKDRKLLDLLKKYQSGAKKDEKVLIFALYKKEAARVERNLKYNGYNVVAIHGDLTQQ 406
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R L F+ + + TD AARG+DIPNV VI F + D++HR+GRT RAGQ
Sbjct: 407 QRTHALNEFKTGSSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQT 466
Query: 521 GLVTSLYTESNRDL 534
G+ +L+TE + L
Sbjct: 467 GVAHTLFTEEAKHL 480
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGD 152
DR I+++ + F +P+ +Q+ S +LSGKDV+ AETGSGKT ++ VP + +
Sbjct: 131 DRRIQSV-IAKFPKPTPIQSVSWPYLLSGKDVIGVAETGSGKTLAFGVPAVNHII----- 184
Query: 153 SENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA-----VCGG- 206
+ T +L++ P L Q+ DN PL V V GG
Sbjct: 185 ------ETSKTVSGIQALIISPTRELASQIY--------DNLIPLTDKVGLECCCVYGGV 230
Query: 207 ----QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262
Q + K ++V+TP LL+ + + V Y+V DEAD +L F+ +
Sbjct: 231 PKDEQRMKLRKCHIVVATPGRLLDLLQEGSVN----LSKVNYLVLDEADRMLEKGFEEDI 286
Query: 263 IRLI 266
+I
Sbjct: 287 KNII 290
>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423208115|ref|ZP_17194669.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404619162|gb|EKB16078.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
Length = 406
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +ATLP + A +L+ + I N L+ ++E+ V ++V AL
Sbjct: 174 RQTLLFSATLPAELETLANGLLR----EPTRIEANPLNSVVNEIEERLYLVNKSSKVPAL 229
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
I +KE+ + +VF + D V + L AGI H + R + L +F
Sbjct: 230 ISLLKEQ-----AWPQVLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVREQALGDF 284
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
+E K V V TD ARGI + + VI D SA ++HR+GRTARAG+ GL SL
Sbjct: 285 KEGKIRVLVATDLMARGIHVEALPVVINLDLPASAPVYVHRIGRTARAGREGLAISLVCH 344
Query: 530 SNRDLVDTIR 539
D++ IR
Sbjct: 345 GESDMLQAIR 354
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ L L L+ +L + P+ +Q ++ L+G+D++ A+TGSGKT ++ +PL+
Sbjct: 1 MTFSELALHPDLLASLPVT-LQTPTRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLL 59
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPL-VRAVA 202
++L +P + LVL P L QV A + E L +R V
Sbjct: 60 QRL--------------DPASSQVQGLVLVPTRELAIQV----TAALKEGAEALGLRIVT 101
Query: 203 VCGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
+CGG Q P ++V+TP L + + +++ + G++ +V DEAD LL
Sbjct: 102 LCGGVAQERQQAELALGPQLLVATPGRLRDLLT----QQVLGLDGLQLLVLDEADRLLEM 157
Query: 257 SFQNQVIRLINMFRFDEKQL 276
F + L+ D + L
Sbjct: 158 GFAPDIKALLGFIPADRQTL 177
>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
Length = 1227
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 514 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 573
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 574 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 621
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 622 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 680
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 681 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 722
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 686 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKE---VEQHVVI 740
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 741 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 797
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 798 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 857
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 858 GSAYTFITPEQSRYAGDIIR 877
>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
Length = 1224
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 678 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 719
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKE---VEQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
Length = 1224
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 678 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 719
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKE---VEQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
>gi|419836253|ref|ZP_14359696.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421342720|ref|ZP_15793125.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|423735152|ref|ZP_17708360.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424009084|ref|ZP_17752030.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|395943237|gb|EJH53912.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|408630321|gb|EKL02932.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408858118|gb|EKL97797.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408864734|gb|EKM04152.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDVYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|359424178|ref|ZP_09215300.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
gi|358240452|dbj|GAB04882.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia amarae NBRC
15530]
Length = 612
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 26/187 (13%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ LG+ DR++ A+ + G+ PS +QAA++ ++SG+DVV A+TG+GKT ++ +P++ +
Sbjct: 32 FDGLGIDDRVLEAISDVGYESPSPIQAATIPVLMSGRDVVGLAQTGTGKTAAFAIPILSR 91
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L +S ++P +L+L P L QV SA P V+ + + G
Sbjct: 92 L---------DDSARKPQ-----ALILAPTRELALQVAEAFGKYSAHM--PKVKVLPIYG 135
Query: 206 GQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
GQ + + VIV TP +++++D R + ++++V DEAD +L F
Sbjct: 136 GQSYVVQLNGLKRGAQVIVGTPGRVIDHLD----RGTLDISELEFLVLDEADEMLTMGFA 191
Query: 260 NQVIRLI 266
V R++
Sbjct: 192 EDVERIL 198
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 19/218 (8%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ + SKQ +AT+P K + +Q D + I + ++
Sbjct: 192 EDVERILADTPDSKQVALFSATMP----KAISRLAQQYLNDPEEIKVKAKTETASNITQR 247
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+++V+ ++DAL + E +F A +VF T A + + L++ G + D
Sbjct: 248 YLQVSHQRKLDALTRFL-EVEQFDA----MIVFVRTKQATEELAEKLRSRGFSAVAINGD 302
Query: 458 LSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
L+ +R +T+ Q K G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 303 LAQAQRERTI--NQLKNGTIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRT 360
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRA-----AKLGQP 547
RAG+ G + R L+ I +A A++G P
Sbjct: 361 GRAGRSGNALLFVSPRERHLLRAIEKATRSTLAEIGLP 398
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 40/247 (16%)
Query: 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147
S G++D L A + G+ +P+ +Q ++ L G+D++ AETGSGKT ++ +P++ L
Sbjct: 159 SKGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL 218
Query: 148 TALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG- 206
TP R +LVL P L Q+ AL + G V+ + GG
Sbjct: 219 --------------ETPQRLFALVLTPTRELAFQISEQFEALGSSIG---VQCAVIVGGI 261
Query: 207 ----QGWPIG-KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
Q + KP ++++TP L+++++ + + R +KY+V DEAD +L F+ +
Sbjct: 262 DSMSQSIALAKKPHIVIATPGRLIDHLENTKGFNL---RALKYLVMDEADRILNMDFETE 318
Query: 262 VIRLINMFRFDE----------KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311
V +++ + D K++ ++ + ++ P++ SS Q E LQ Y+
Sbjct: 319 VDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEKLQQYYL 374
Query: 312 SDEGNFE 318
F+
Sbjct: 375 FIPSKFK 381
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
M+F +T + +L+ G H +S +R +L F+ K + + TD A+RG
Sbjct: 398 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 457
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538
+DIP+V V+ D T + D++HRVGRTARAG+ G + T+ + +L I
Sbjct: 458 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 509
>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
Length = 1201
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 419 EFGAET-SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGV 476
E G E ++T++F T V +TK ++ G + H D + +ER L F+ K +
Sbjct: 353 EIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGKAPI 412
Query: 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR---- 532
V TD AARG+D+ +V +VI DF +S+ D++HR+GRT R Q G + +T N
Sbjct: 413 LVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNMKHAG 472
Query: 533 DLVDTIRRAAKLGQP 547
DL++ +R A + P
Sbjct: 473 DLIEVLREAGQNVNP 487
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459
E ++++ L+E + E ++T++F T V +T+ + G + H D S
Sbjct: 933 EYEKESKLMKLLEEISNEPE-----NKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKS 987
Query: 460 LEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518
+ER L F+ + + V TD AARG+D+ +V VI D+ +++ D++HR+GRT R+
Sbjct: 988 QQERDYVLNQFRNSRSAILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQ 1047
Query: 519 QYGLVTSLYTESNR----DLVDTIRRAAKLGQP 547
+ G + +T N DL+ + A ++ P
Sbjct: 1048 RTGTAYAFFTPGNAHKAGDLIQVLEEAKQVVNP 1080
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPL 142
N+ ++ G D ++ + GFG P+ +QA LSG+D+V A+TGSGKT +Y++P
Sbjct: 704 NIYFEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPA 763
Query: 143 IEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202
I + S N +L+L P L +Q+ ++A+ + VR
Sbjct: 764 IVHINHQPRLSRNDG---------PIALILAPTRELAQQIQQVASDFGMSS---QVRNTC 811
Query: 203 VCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
+ GG P G ++ ++TP L++ ++ R +R Y+V DEAD +L
Sbjct: 812 IFGGA--PKGPQARDLERGVEICIATPGRLIDFLE----RGTTNLRRCTYLVLDEADRML 865
Query: 255 CGSFQNQVIRLINMFRFDEKQL 276
F+ Q+ +++ R D + L
Sbjct: 866 DMGFEPQIRKIVEQIRPDRQTL 887
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 95 LIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154
++ + G+ RP+ +QA LSG+D+V A+TGSGKT Y++P I +
Sbjct: 123 VMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVHIIHQ----- 177
Query: 155 NSNSDKEPTPPRAPS------LVLCPNVVLCEQVVRMANALSADNGE-PLVRAVAVCGG- 206
PR S L+L P L +Q+ +AN+ GE VR + GG
Sbjct: 178 ----------PRISSGDGPIVLILAPTRELAQQIQEVANSF----GEMAAVRNTCIFGGA 223
Query: 207 ----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261
Q + K ++ ++TP L ID + R Y+V DEAD +L F+ Q
Sbjct: 224 PKGPQAHDLEKGIEICIATPGRL---IDFLEKGTTNLYR-CTYLVLDEADRMLDMGFEPQ 279
Query: 262 VIRLINMFRFDEKQL 276
+ ++I R D + L
Sbjct: 280 IRKIIEQIRPDRQVL 294
>gi|198413643|ref|XP_002129533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 2 [Ciona intestinalis]
Length = 401
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 21/218 (9%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
VT++SLG+ D L + G+ +PS +Q ++ L G DV+ AETGSGKT ++ +P++
Sbjct: 20 VTFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVL 79
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP---LVRA 200
+ L EN P R +LVL P L Q+ AL + G +V
Sbjct: 80 QALL------EN--------PQRLFALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGG 125
Query: 201 VAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260
V + G Q KP V+V+TP L+++++ + + R +K++V DEAD +L F++
Sbjct: 126 VDMMGQQIILAKKPHVVVATPGRLVDHLEKTKGFTL---RSIKFLVLDEADRILNMDFES 182
Query: 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
++ ++ + E++ + + K ++ ++LT+P
Sbjct: 183 ELDTILKVIP-RERRTFLFSATMTGKVKKLQRAALTKP 219
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535
+ V TD A+RG+DIP+V VI D + D++HRVGRTARAG++G + T+ + +L
Sbjct: 264 ILVATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELY 323
Query: 536 DTI 538
I
Sbjct: 324 QRI 326
>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SAKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|340506709|gb|EGR32792.1| RNA helicase, putative [Ichthyophthirius multifiliis]
Length = 704
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH--------NP 392
RR+ + +Q + +AT P N + A +D+ +H N
Sbjct: 297 RRILGQIRPDRQTLMFSATWPKNVQNLA----------SDYCQNQPVHIQMGKFELSIND 346
Query: 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY 452
R+K+ V + + LI+ +L+ + + +VFA T + ++L++ G +C
Sbjct: 347 RIKQIVYVVDPSKKQNLLIK----QLDQLTQKDKVLVFAQTRKGCEILNRLLESEGFKCM 402
Query: 453 CYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511
H D + ++R + F+ + + TD A+RG+D+ +VSHV DF D++HR+
Sbjct: 403 AIHGDKTQKDRDYVMHKFKNGDNKILIATDVASRGLDVKDVSHVFNFDFPKVMEDYIHRI 462
Query: 512 GRTARAGQYGLVTSL 526
GRT RAG YG+ S
Sbjct: 463 GRTGRAGAYGIAVSF 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 96/207 (46%), Gaps = 38/207 (18%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
++W + ++ ++N+ F +PS +QA S VL+G D++ AETGSGKT ++L+P I
Sbjct: 128 LSWSDAHFPNYVMTEVQNAKFEKPSPIQALSFPIVLTGSDLIGIAETGSGKTLAFLLPAI 187
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPS---LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
+ + +P R LVL P L Q+ + + ++
Sbjct: 188 VHI------------NAQPAVRRGEGPIVLVLVPTRELAMQIENQSEKFGKTSK---IKT 232
Query: 201 VAVCGG-----------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249
+ GG QG DVI++TP L++ ++ + ++ V Y+V DE
Sbjct: 233 ACIYGGADKFPQKILLQQGV-----DVIIATPGRLIDFLE----MGVTNLKRVTYLVLDE 283
Query: 250 ADMLLCGSFQNQVIRLINMFRFDEKQL 276
AD +L F+ Q+ R++ R D + L
Sbjct: 284 ADRMLDMGFELQIRRILGQIRPDRQTL 310
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 10/199 (5%)
Query: 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400
R++ + +Q + +AT+P + A+ M D +S R+ +
Sbjct: 170 RQIVAKLPKQRQTLLFSATMP----REISALADDMLRDPAKVSVTPAATTAERVAQHVYL 225
Query: 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460
V+ + D L+E + +R E SR +VF T V + L++AG+ H + S
Sbjct: 226 VSGGAKRDLLVELLNDR-----EISRAIVFTRTKRGADRVAQHLESAGVGADAIHGNKSQ 280
Query: 461 EERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519
+R + L F++ + V V TD AARGID+ V+HV+ + A ++HR+GRTARAG
Sbjct: 281 SQRLRALDGFRKGRTRVLVATDIAARGIDVDGVTHVVNFELPEVAEAYVHRIGRTARAGA 340
Query: 520 YGLVTSLYTESNRDLVDTI 538
G SL R L+ I
Sbjct: 341 TGQAISLCDNGERPLLRAI 359
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 24/182 (13%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+ LGL++ L+RALE G+ P+ VQA S+ +L G+D++ A+TG+GKT ++ +P++
Sbjct: 1 MTFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG--EPLVRAV 201
+L L D + P P A +L+L P L Q+ A++ + P V V
Sbjct: 61 HRL---LADK------RRPAPNTARALILAPTRELAAQI---ADSFRSYGHFFRPSV-GV 107
Query: 202 AVCGGQGWPIGKP-----DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256
V G P + DV+V+TP LL+++ R R + + +V DEAD +L
Sbjct: 108 IVGGVSHRPQNEMLARGLDVLVATPGRLLDHLGSGRLR----LATTEVLVLDEADHMLDL 163
Query: 257 SF 258
F
Sbjct: 164 GF 165
>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
Length = 1224
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 678 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 719
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKE---VEQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
Length = 1198
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 678 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 719
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKEV---EQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
Length = 1224
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 29/222 (13%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
TW G+S + + L GF +P+ +Q ++ ++SG+D++ A+TGSGKT ++++P+
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ L + D A ++++ P LC Q+ + S G +R V V
Sbjct: 571 HI---LDQPSMEDGDG------AIAIIMAPTRELCMQIGKDIRKFSKSLG---LRPVCVY 618
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 619 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 677
Query: 259 QNQVIRLINMFRFDE----------KQLSRMNESGVEKPLEM 290
+ QV+R+I+ R D +Q+ + ++KP+E+
Sbjct: 678 EPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEV 719
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV 401
R+ N + +Q + +AT P + A +LK+ P + G + E+ + +
Sbjct: 683 RIIDNVRPDRQTVMFSATFPRQMEALARRILKK--PIEVIVGGRSVVCKE---VEQHVVI 737
Query: 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLE 461
D DA + E L E +VF + + + + L A C H +
Sbjct: 738 LND---DAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQF 794
Query: 462 ERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520
+R T+++F+ K + + T AARG+D+ ++ V+ D D++HR GRT RAG+
Sbjct: 795 DRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK 854
Query: 521 GLVTSLYT-ESNRDLVDTIR 539
G + T E +R D IR
Sbjct: 855 GSAYTFITPEQSRYAGDIIR 874
>gi|401839240|gb|EJT42545.1| RRP3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 404
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 26/220 (11%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ L L LI+A +N + +P+ +Q+ S+ P L G D++ A+TGSGKT ++ +P++
Sbjct: 84 SFNELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILN 143
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L D+EP + +L P L +Q+ ++L + G VR+ +
Sbjct: 144 RLW----------HDQEPY----YACILAPTRELAQQIKEAFDSLGSLMG---VRSTCIV 186
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG + KP +I++TP L+++++ + + R +K++V DEAD LL F
Sbjct: 187 GGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSL---RKLKFLVMDEADRLLDMEF 243
Query: 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQP 298
+ R++ + E+ + + K ++ +SLT P
Sbjct: 244 GPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNP 283
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
T+ GLS +++A+ SG+ P+ +QA ++ VLSG+DV+ AA+TG+GKT S+ +P+I+
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+L + N+++ P RA L+L P L +QV AN + PL R+ V
Sbjct: 78 RLLP----TANTSASPARHPVRA--LMLTPTRELADQVA--ANVQTYSKHTPL-RSTVVF 128
Query: 205 GG-----QGWPIGKP-DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG Q + + +++++TP LL+++ K + V+ +V DEAD +L F
Sbjct: 129 GGVDMNPQSDALRRGVEILIATPGRLLDHVQQK----TVNLGQVQMLVLDEADRMLDMGF 184
Query: 259 QNQVIRLINMF 269
+ R++N+
Sbjct: 185 LPDLQRILNLL 195
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D +R+ + Q + +AT KK A L+ + I + N +++
Sbjct: 187 DLQRILNLLPKECQTLLFSATFSAEIKKLASTYLR----NPQTIEVARSNSTNANVRQIV 242
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
EV + A+ + ++ER + + +VF N+ + ++L+ GI H D
Sbjct: 243 YEVHESDKSGAVAQLIRER-----KLKQVIVFCNSKIGASRLARVLERDGIVATAIHGDR 297
Query: 459 SLEERAKTLVNFQEKGGV--FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516
+ ER + L F+ +G + V TD AARG+DI + VI D +A D++HR+GRT R
Sbjct: 298 TQSERMQALDAFK-RGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGR 356
Query: 517 AGQYGLVTSLYTESNRDLVDTIRRAAK 543
AG G SL + + R + I + K
Sbjct: 357 AGASGDALSLCSANERKQLADIEKLIK 383
>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
Length = 436
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+KSLGLSD L++A+E G+ P+ +Q ++ +L G D++ A+TG+GKT ++ +PL +
Sbjct: 4 FKSLGLSDTLLKAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAHR 63
Query: 146 LCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
L + P P A +L+L P L Q+ +N S PL R +V G
Sbjct: 64 LL---------EEGRTPEPKAARALILAPTRELVNQIA--SNLTSFIRKTPL-RVTSVVG 111
Query: 206 G-----QGWPIGK-PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259
G Q +G+ D++V+TP LL+ +D R+ + Y+V DEAD +L F
Sbjct: 112 GVSINPQIKRLGRGTDILVATPGRLLDLVD----RKAVHLNKASYLVLDEADQMLDLGFI 167
Query: 260 NQVIRLINMF 269
+ + R+ +
Sbjct: 168 HALRRIAGLV 177
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARG 486
+VF T + K L AG+ H + S +R + + +E V V TD AARG
Sbjct: 249 LVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVLVATDVAARG 308
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540
IDIP VSHV + A ++HR+GRTARAG G SL + L+ I +
Sbjct: 309 IDIPGVSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQIEK 362
>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEH-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|432117756|gb|ELK37909.1| Putative ATP-dependent RNA helicase DDX46 [Myotis davidii]
Length = 1191
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
+W G+S +++ +L+ G+ +P+ +QA ++ ++SG+D++ A+TGSGKT ++L+P+
Sbjct: 610 SWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR 669
Query: 145 KLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ + S +E P A +++ P L Q+ + S G +R V V
Sbjct: 670 HIM-------DQRSLEEGEGPIA--VIMTPTRELALQITKECKKFSKTLG---LRVVCVY 717
Query: 205 GGQGWP--IGK----PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GG G I + ++IV TP +++ + R+ +R V YVV DEAD + F
Sbjct: 718 GGTGISEQIAELKRGAEIIVCTPGRMIDML-AANSGRVTNLRRVTYVVLDEADRMFDMGF 776
Query: 259 QNQVIRLINMFRFD 272
+ QV+R+++ R D
Sbjct: 777 EPQVMRIVDNVRPD 790
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGG---VFVC 479
E+ ++F + + + K L A C H + +R + +F K G + V
Sbjct: 855 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDF--KNGTCKLLVA 912
Query: 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539
T AARG+D+ ++ V+ D++HR GRT RAG G + TE I
Sbjct: 913 TSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDII 972
Query: 540 RAAKL 544
+A +L
Sbjct: 973 KALEL 977
>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|417824458|ref|ZP_12471049.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|419829955|ref|ZP_14353441.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832928|ref|ZP_14356390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|421354161|ref|ZP_15804493.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|422307246|ref|ZP_16394411.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|422917142|ref|ZP_16951470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423819816|ref|ZP_17716074.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423853148|ref|ZP_17719866.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423880572|ref|ZP_17723468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423997559|ref|ZP_17740818.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424016266|ref|ZP_17756107.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424019207|ref|ZP_17759003.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424624749|ref|ZP_18063221.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424629251|ref|ZP_18067548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424633282|ref|ZP_18071392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424636373|ref|ZP_18074388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424640310|ref|ZP_18078200.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424648344|ref|ZP_18086014.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443527168|ref|ZP_21093233.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|340048143|gb|EGR09066.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|341638535|gb|EGS63182.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|395953286|gb|EJH63899.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|408014062|gb|EKG51743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408019673|gb|EKG57065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408024809|gb|EKG61897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408025337|gb|EKG62396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408034628|gb|EKG71119.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408057083|gb|EKG91949.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408621540|gb|EKK94543.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408622563|gb|EKK95545.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408635749|gb|EKL07935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408642909|gb|EKL14653.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408643117|gb|EKL14856.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651572|gb|EKL22828.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408853491|gb|EKL93284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408861066|gb|EKM00665.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|408868702|gb|EKM08022.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|443454574|gb|ELT18376.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
Length = 460
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 10/207 (4%)
Query: 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398
D + + K ++Q + +AT+P K A +LK + ++I+ N +KE +
Sbjct: 158 DIKEIFKFVPSNRQTLLFSATMPEPIKNLAKTILK----NPEFITITRKQVTNENIKEYF 213
Query: 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458
+ + DALI RL ++++VF T V + + L AG + H D+
Sbjct: 214 YVIDEFERKDALI-----RLIDYKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLHGDM 268
Query: 459 SLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517
+R + + F+ ++ + V TD AARG+D+ NVSHV ++HR+GRT RA
Sbjct: 269 DQRKREEVIRGFKSDRIEILVATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRA 328
Query: 518 GQYGLVTSLYTESNRDLVDTIRRAAKL 544
G+ G+ SL T ++ I++ +K+
Sbjct: 329 GKEGMAISLVTPHEFRALNRIQKISKI 355
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 38/188 (20%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+K L +I+ LE GF +PS +Q ++ +L GKDVV A+TG+GKT ++ +P++
Sbjct: 1 MTFKDFKLKKEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPN----VVLCEQVVRMANALSADNGEPLVR 199
K+ D++ +L++ P + + E++ R L V
Sbjct: 61 SKI----------KKDEK-------ALIITPTRELAIQVSEEIFRFGKYLG-------VH 96
Query: 200 AVAVCGGQGW-----PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL 254
V GG + I I++TP LL D + +++ KYV+ DEAD +L
Sbjct: 97 TATVYGGSSYNRQIKHIENSQFIIATPGRLL---DLLKSGKIDI--APKYVILDEADEML 151
Query: 255 CGSFQNQV 262
F + +
Sbjct: 152 DMGFLDDI 159
>gi|441515068|ref|ZP_20996877.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
gi|441450162|dbj|GAC54838.1| ATP-dependent RNA helicase DeaD [Gordonia amicalis NBRC 100051]
Length = 589
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 99/189 (52%), Gaps = 28/189 (14%)
Query: 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIE 144
++ LG+ R+ A+ + G+ PS +QAA++ P++ G+DVV A+TG+GKT ++ +P++
Sbjct: 24 SFDDLGIEPRVRAAITDVGYETPSPIQAATIPPLMDGRDVVGLAQTGTGKTAAFAIPILS 83
Query: 145 KLCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+L T+ R P +L+L P L QV SA P V+ + +
Sbjct: 84 RLDTS---------------ARTPQALILAPTRELALQVSEAFGRYSAHM--PEVKVLPI 126
Query: 204 CGGQGWPIG------KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GGQ + + VIV TP +++++D ++ + G++++V DEAD +L
Sbjct: 127 YGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLD----KKTLDISGLEFLVLDEADEMLTMG 182
Query: 258 FQNQVIRLI 266
F V R++
Sbjct: 183 FAEDVERIL 191
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397
+D R+ +KQ +AT+P + ++ A LK P + N + ++
Sbjct: 185 EDVERILAETPDTKQVALFSATMPSSIRRLAQRYLKS--PQEITVKSKTATAQN--ITQR 240
Query: 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457
+++V+ ++DAL + E EF A +VF T A + + L++ G+ + D
Sbjct: 241 YLQVSHQRKLDALTRFL-EVEEFDA----MIVFVRTKQATEELAEKLRSRGLSAVAINGD 295
Query: 458 LSLEERAKTLVNFQEKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
L+ +R +T+ Q K G + V TD AARG+D+ +SHV+ D ++HR+GRT
Sbjct: 296 LAQAQRERTI--NQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRT 353
Query: 515 ARAGQYGLVTSLYTESNRDLVDTIRRAAK 543
RAG+ G + R L+ I RA +
Sbjct: 354 GRAGRSGNALLFVSPRERHLLRAIERATR 382
>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 465
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAA 484
+ +VF T V L AG H D+ R +TL + + + V TD AA
Sbjct: 270 QALVFTATKRDADIVADRLAIAGFSAAALHGDMPQGARNRTLTKLRRGQVKILVATDVAA 329
Query: 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544
RGIDIPN++HV+ D D++HR+GRT RAG++GL SL ++ + V I R K
Sbjct: 330 RGIDIPNITHVVNYDLPKFPEDYVHRIGRTGRAGRHGLAISLVNHNDNNNVRKIERFTKQ 389
Query: 545 GQPV 548
PV
Sbjct: 390 SIPV 393
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+T+++LGL + +AL + + +P+ VQ ++ + GKD++++++TGSGKT ++++P +
Sbjct: 1 MTFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPAL 60
Query: 144 EKLCTA---LGDSENSNSDK------------EPTPPRAPSLVLCPNVVLCEQVVRMANA 188
+ + D + N + EP P+ LVL P L Q+V+ +
Sbjct: 61 HRFASVPFEKSDKKTFNQKRQAARAKGEKVRYEPAHPKM--LVLTPTRELAMQIVQSSED 118
Query: 189 LSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242
SA R VA+ GG +P P+++V+TP L++++ + R + +
Sbjct: 119 YSAYLKH--FRTVAILGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQ----L 172
Query: 243 KYVVFDEADMLLCGSFQNQVIRLI 266
+ +V DEAD +L F + + +I
Sbjct: 173 EILVLDEADRMLDMGFIDDIETII 196
>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLI 143
+++ LGLSD L++ + G+ +P+ +Q ++ +L G+D++ AA+TG+GKT S+++P++
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 144 EKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
EKL G ++ R +L+L P L QV D G ++++AV
Sbjct: 61 EKLRQ--GQTQRKK--------RVRALILVPTRELAMQVAEKVEQYGKDTG---LKSLAV 107
Query: 204 CGG------QGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257
GG + I DV+V+TP L++ +R + ++ VV DEAD +L
Sbjct: 108 FGGVDEQAQKQRLIDGVDVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMG 163
Query: 258 FQNQVIRLIN 267
F + ++I+
Sbjct: 164 FIESINKIID 173
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411
Q++ +ATL ++ A ++ P I+ N N + + I V DT+ L
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRD--PHEISIAANQASKSN--ISQWLITVDKDTKSALLS 235
Query: 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471
+ E+ + + ++F T + L+ GI +H S RA+ L +F+
Sbjct: 236 HLINEQ-----QWDQALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFK 290
Query: 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530
K V T AARGIDI +S V+ D A +++HR+GRT RA G S ++
Sbjct: 291 SGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKD 350
Query: 531 N 531
N
Sbjct: 351 N 351
>gi|147854298|emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]
Length = 563
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 95/215 (44%), Gaps = 22/215 (10%)
Query: 352 QYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD-----TQ 406
QY+FV ATLP+ L ++FPD + I G +H + RL+E ++ + D T
Sbjct: 342 QYLFVTATLPVGIYNK----LVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTP 397
Query: 407 VDALIEAVKERLEF--GAETSRTMVFANTVDAVYAVTKILKT-----AGIECYCYHKDLS 459
A + L+ G+ SRT+VF N ++ V +LK + +H L+
Sbjct: 398 ESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALT 457
Query: 460 LEERAKTLVNF--QEKGGV---FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRT 514
E R L F GV VCTD A+RGID HV+ DF +++ RVGRT
Sbjct: 458 QESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKXDHVVLFDFPRDPSEYVRRVGRT 517
Query: 515 AR-AGQYGLVTSLYTESNRDLVDTIRRAAKLGQPV 548
AR AG G L I K G P+
Sbjct: 518 ARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPL 552
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 44 RVRFLRLNQWK-GRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKS---LGLSDRLIRAL 99
RV L W G R F + + G ++ D + KS LG SD +I +L
Sbjct: 85 RVSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESL 144
Query: 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159
F RPS +QA + V+ GK +IA ++GSGKT +YL+P+I++L
Sbjct: 145 RGQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRL------------R 192
Query: 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 205
+E S CP VV+ +A+ + R VCG
Sbjct: 193 EEELQGLGKSSAGCPRVVILVPTAELASQM---------RFCYVCG 229
>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
gi|74659998|sp|Q6CB69.1|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica CLIB122]
Length = 618
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDAL 410
+Q + +AT P N + A LK D ++S + + + +K V ++ AL
Sbjct: 354 RQTLMFSATFPRNIQMLARDFLK----DYIFLSVGRVGSTSENITQKVEYVEDGDKISAL 409
Query: 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470
++ + A T+VF T + +L++ H D S +R + L F
Sbjct: 410 LDILS-----AAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMF 464
Query: 471 QE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTE 529
++ + V T AARG+DIPNV+HV+ D T D++HR+GRT RAG G+ T+ +
Sbjct: 465 RDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNR 524
Query: 530 SN----RDLVDTIRRAAK 543
N R+L+D ++ A +
Sbjct: 525 GNKGIVRELIDILKEAHQ 542
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ + + +P+ VQ SV V +G+D++ A+TGSGKT +L P++ +
Sbjct: 167 LEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQSFF-- 224
Query: 151 GDSENSNSDKEPTPPR-------APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203
+ +PT PR +LVL P L Q+ A + VR V
Sbjct: 225 ---HGPSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQIYDEAKKFAY---RSWVRPCVV 278
Query: 204 CGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255
GG IG+ D++V+ P L++ ID R + +KY+V DEAD +L
Sbjct: 279 YGGAD--IGEQMRNIERGCDLLVAAPGRLVDLID----RGKVSLENIKYLVLDEADRMLD 332
Query: 256 GSFQNQVIRLI 266
F+ Q+ ++
Sbjct: 333 MGFEPQIRAIV 343
>gi|448522534|ref|XP_003868713.1| Ded1 protein [Candida orthopsilosis Co 90-125]
gi|380353053|emb|CCG25809.1| Ded1 protein [Candida orthopsilosis]
Length = 636
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAAR 485
T+VF T + L G H D S ER K L F+ K + V T AAR
Sbjct: 418 TIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKNGKAPILVATAVAAR 477
Query: 486 GIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV-DTIRRAAKL 544
G+DIPNVSHVI D D++HR+GRT RAG G+ T+ + +N+++ D I ++
Sbjct: 478 GLDIPNVSHVINYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIAKDMIELLSEA 537
Query: 545 GQPV 548
Q V
Sbjct: 538 NQEV 541
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 36/194 (18%)
Query: 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150
L + L+ ++ S F +P+ VQ SV V G+D++ A+TGSGKT +L P++
Sbjct: 165 LDELLVENIKFSKFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVL------- 217
Query: 151 GDSENSNSDKEPTPPRAPS----------LVLCPNVVLCEQVVRMANALSADNGEPLVRA 200
SE+ + P P + LV+ P L Q+ + + + VR
Sbjct: 218 --SESYANGPAPVPESTGTFSSHKAYPTVLVMAPTRELVSQIYDESKKFAYRS---WVRP 272
Query: 201 VAVCGGQGWPIGKP--------DVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252
V GG IG D++V+TP L + ++ R R+ +KY+V DEAD
Sbjct: 273 CVVYGGAD--IGNQIRQLDRGCDLLVATPGRLKDLLE---RGRVSLAN-IKYLVLDEADR 326
Query: 253 LLCGSFQNQVIRLI 266
+L F+ Q+ +++
Sbjct: 327 MLDMGFEPQIRQIV 340
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 28/184 (15%)
Query: 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145
+ +LG+ + AL+ G P+ VQ S+ ++ G+DV+ A TG+GKT ++L+P+++K
Sbjct: 4 FAALGVEQHWVDALKEQGITAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQK 63
Query: 146 LCTALGDSENSNSDKEPTPPRAP-SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204
+ N DK R P +LV+ P L Q+ + AN L+A EP + +AV
Sbjct: 64 M----------NLDK-----RHPQALVIAPTRELALQITQEANILAAT--EPSLSLLAVY 106
Query: 205 GGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258
GGQ G +I+ TP LL+++ RR + GVK +V DEAD +L F
Sbjct: 107 GGQDVERQLRKLKGGAQLIIGTPGRLLDHL----RRGTLDLSGVKMLVLDEADQMLHMGF 162
Query: 259 QNQV 262
N V
Sbjct: 163 LNDV 166
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARG 486
++F T A+ + L+ G E H DLS +R + + F+E K + V TD AARG
Sbjct: 246 VIFCRTKRRAAALNEQLQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARG 305
Query: 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528
+D+ V+HV D A ++HR+GRT RAG G+ +L T
Sbjct: 306 LDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLAT 347
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,606,854,556
Number of Sequences: 23463169
Number of extensions: 370816919
Number of successful extensions: 1224645
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 25729
Number of HSP's successfully gapped in prelim test: 6316
Number of HSP's that attempted gapping in prelim test: 1140753
Number of HSP's gapped (non-prelim): 63711
length of query: 548
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 400
effective length of database: 8,886,646,355
effective search space: 3554658542000
effective search space used: 3554658542000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)