Query 045757
Match_columns 548
No_of_seqs 286 out of 1969
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.2E-69 2.6E-74 495.6 27.6 361 80-547 57-424 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 8.6E-66 1.9E-70 502.7 34.6 363 85-543 92-461 (519)
3 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-63 2.9E-68 471.8 33.0 395 77-548 238-646 (673)
4 KOG0340 ATP-dependent RNA heli 100.0 1.8E-62 3.8E-67 443.4 26.4 364 83-545 6-376 (442)
5 COG0513 SrmB Superfamily II DN 100.0 1.3E-61 2.9E-66 495.8 33.4 359 84-547 29-398 (513)
6 KOG0328 Predicted ATP-dependen 100.0 3.6E-61 7.7E-66 421.5 25.1 358 81-546 24-389 (400)
7 PRK04837 ATP-dependent RNA hel 100.0 3.1E-60 6.8E-65 481.4 35.7 367 82-547 6-379 (423)
8 KOG0338 ATP-dependent RNA heli 100.0 1.2E-61 2.5E-66 456.9 22.7 355 83-541 180-544 (691)
9 PTZ00110 helicase; Provisional 100.0 5.6E-60 1.2E-64 488.7 35.7 366 78-543 124-497 (545)
10 KOG0342 ATP-dependent RNA heli 100.0 3.8E-60 8.3E-65 446.4 28.3 358 83-539 81-446 (543)
11 KOG0345 ATP-dependent RNA heli 100.0 1.6E-59 3.5E-64 439.0 29.7 359 83-539 3-373 (567)
12 PRK10590 ATP-dependent RNA hel 100.0 6.5E-59 1.4E-63 474.5 36.7 361 85-547 2-369 (456)
13 KOG0326 ATP-dependent RNA heli 100.0 3.4E-60 7.3E-65 422.3 21.6 356 82-546 83-445 (459)
14 PRK04537 ATP-dependent RNA hel 100.0 1.4E-58 3E-63 479.6 37.2 366 84-547 9-381 (572)
15 PLN00206 DEAD-box ATP-dependen 100.0 4.1E-58 9E-63 473.8 37.5 366 78-543 115-488 (518)
16 PRK11634 ATP-dependent RNA hel 100.0 4.2E-58 9.2E-63 478.2 37.4 359 82-547 4-369 (629)
17 PRK11776 ATP-dependent RNA hel 100.0 3.2E-58 6.9E-63 471.8 34.7 356 83-546 3-365 (460)
18 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-58 3.8E-63 439.3 27.7 359 81-540 66-433 (758)
19 PRK11192 ATP-dependent RNA hel 100.0 3.5E-57 7.6E-62 461.5 37.6 359 85-546 2-368 (434)
20 PRK01297 ATP-dependent RNA hel 100.0 2.7E-56 5.9E-61 458.5 43.4 367 81-546 84-458 (475)
21 KOG0348 ATP-dependent RNA heli 100.0 5.6E-58 1.2E-62 434.4 28.0 379 83-540 135-564 (708)
22 KOG0347 RNA helicase [RNA proc 100.0 1.9E-58 4.2E-63 438.9 16.3 377 83-543 180-583 (731)
23 KOG0335 ATP-dependent RNA heli 100.0 1.1E-56 2.4E-61 430.9 27.6 376 80-543 70-457 (482)
24 KOG0336 ATP-dependent RNA heli 100.0 3.2E-55 6.9E-60 402.8 24.0 373 70-543 205-585 (629)
25 KOG0346 RNA helicase [RNA proc 100.0 4.8E-55 1E-59 405.4 24.1 363 84-543 19-423 (569)
26 PTZ00424 helicase 45; Provisio 100.0 1E-53 2.3E-58 433.3 35.8 357 82-546 26-390 (401)
27 KOG0341 DEAD-box protein abstr 100.0 1.2E-55 2.6E-60 402.9 17.9 356 78-531 164-529 (610)
28 TIGR03817 DECH_helic helicase/ 100.0 2.9E-52 6.2E-57 443.1 32.7 354 91-544 21-402 (742)
29 KOG0350 DEAD-box ATP-dependent 100.0 3.4E-52 7.4E-57 392.4 23.9 378 94-544 147-554 (620)
30 KOG0332 ATP-dependent RNA heli 100.0 1.6E-51 3.5E-56 374.5 26.8 356 83-545 89-459 (477)
31 KOG0339 ATP-dependent RNA heli 100.0 1.3E-51 2.8E-56 388.6 26.8 363 75-539 214-584 (731)
32 KOG0334 RNA helicase [RNA proc 100.0 2.1E-51 4.6E-56 421.5 23.6 369 76-543 357-733 (997)
33 KOG0327 Translation initiation 100.0 2.4E-50 5.1E-55 370.5 23.9 359 78-546 20-386 (397)
34 PLN03137 ATP-dependent DNA hel 100.0 2.9E-49 6.4E-54 416.2 34.5 341 84-539 435-796 (1195)
35 KOG0337 ATP-dependent RNA heli 100.0 2.8E-50 6E-55 372.0 20.1 356 83-544 20-382 (529)
36 TIGR00614 recQ_fam ATP-depende 100.0 7.5E-49 1.6E-53 401.6 31.2 326 100-540 5-343 (470)
37 KOG4284 DEAD box protein [Tran 100.0 3.1E-48 6.7E-53 375.3 22.5 360 76-538 17-388 (980)
38 PRK11057 ATP-dependent DNA hel 100.0 5.5E-47 1.2E-51 397.5 32.1 330 91-539 9-352 (607)
39 KOG0344 ATP-dependent RNA heli 100.0 2.5E-47 5.4E-52 368.5 24.3 366 78-543 126-508 (593)
40 PRK02362 ski2-like helicase; P 100.0 2E-46 4.4E-51 403.4 33.3 341 85-531 2-398 (737)
41 TIGR01389 recQ ATP-dependent D 100.0 1E-45 2.2E-50 389.7 32.0 323 98-539 4-340 (591)
42 PRK13767 ATP-dependent helicas 100.0 1E-44 2.2E-49 393.1 35.3 348 91-528 18-396 (876)
43 PRK00254 ski2-like helicase; P 100.0 1.8E-44 3.8E-49 387.4 32.5 337 85-531 2-389 (720)
44 COG0514 RecQ Superfamily II DN 100.0 7E-44 1.5E-48 355.7 27.5 327 97-540 7-347 (590)
45 PRK01172 ski2-like helicase; P 100.0 1.5E-42 3.1E-47 371.2 32.4 334 85-530 2-378 (674)
46 COG1201 Lhr Lhr-like helicases 100.0 1.4E-42 2.9E-47 359.1 29.7 352 91-538 8-369 (814)
47 TIGR00580 mfd transcription-re 100.0 5.3E-41 1.1E-45 359.9 33.1 325 91-541 436-787 (926)
48 TIGR00643 recG ATP-dependent D 100.0 4.3E-40 9.3E-45 347.0 32.5 312 94-527 224-563 (630)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.3E-40 9.4E-45 342.5 30.5 330 97-529 6-390 (844)
50 PRK10917 ATP-dependent DNA hel 100.0 1.3E-39 2.8E-44 345.4 34.0 312 93-529 248-588 (681)
51 PRK10689 transcription-repair 100.0 1E-39 2.2E-44 357.5 31.6 321 95-541 590-936 (1147)
52 KOG0329 ATP-dependent RNA heli 100.0 7.4E-41 1.6E-45 289.7 14.9 326 75-540 33-366 (387)
53 PRK09751 putative ATP-dependen 100.0 4.3E-39 9.3E-44 353.8 29.8 312 126-524 1-379 (1490)
54 COG1204 Superfamily II helicas 100.0 2.8E-38 6E-43 332.1 27.9 335 90-531 15-409 (766)
55 COG1202 Superfamily II helicas 100.0 2E-38 4.3E-43 304.2 24.3 338 83-530 193-553 (830)
56 PHA02558 uvsW UvsW helicase; P 100.0 1.2E-37 2.6E-42 320.5 30.7 311 105-527 113-449 (501)
57 PRK09401 reverse gyrase; Revie 100.0 1.9E-37 4.1E-42 340.3 31.8 307 96-502 70-410 (1176)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-37 4.3E-42 329.1 30.0 308 112-535 8-341 (819)
59 COG1111 MPH1 ERCC4-like helica 100.0 1.9E-37 4E-42 295.6 26.4 385 105-533 14-484 (542)
60 KOG0353 ATP-dependent DNA heli 100.0 9.5E-38 2.1E-42 285.3 22.4 351 83-541 68-478 (695)
61 COG1205 Distinct helicase fami 100.0 1.6E-37 3.5E-42 331.0 27.3 347 91-530 55-422 (851)
62 KOG0351 ATP-dependent DNA heli 100.0 6.3E-38 1.4E-42 331.2 23.2 336 94-541 251-603 (941)
63 PHA02653 RNA helicase NPH-II; 100.0 4.2E-37 9.2E-42 318.9 28.6 319 108-539 166-523 (675)
64 PRK12898 secA preprotein trans 100.0 6.5E-37 1.4E-41 312.2 29.2 390 102-532 100-588 (656)
65 KOG0352 ATP-dependent DNA heli 100.0 7.7E-38 1.7E-42 289.9 20.0 342 94-540 6-372 (641)
66 PRK11664 ATP-dependent RNA hel 100.0 5E-37 1.1E-41 327.0 26.9 305 113-533 12-342 (812)
67 KOG0349 Putative DEAD-box RNA 100.0 4.7E-37 1E-41 285.1 21.0 283 162-529 282-614 (725)
68 PRK09200 preprotein translocas 100.0 7.4E-36 1.6E-40 311.0 29.0 393 101-532 74-543 (790)
69 TIGR01587 cas3_core CRISPR-ass 100.0 5E-36 1.1E-40 298.8 26.4 298 123-531 1-337 (358)
70 PRK14701 reverse gyrase; Provi 100.0 3.2E-36 6.9E-41 337.3 25.4 350 93-538 66-464 (1638)
71 TIGR03714 secA2 accessory Sec 100.0 4.7E-36 1E-40 309.3 24.1 385 107-532 69-539 (762)
72 TIGR01054 rgy reverse gyrase. 100.0 4.5E-35 9.7E-40 322.2 31.6 321 93-501 65-408 (1171)
73 TIGR00963 secA preprotein tran 100.0 4.9E-35 1.1E-39 299.8 28.8 391 101-533 52-520 (745)
74 PRK13766 Hef nuclease; Provisi 100.0 5.7E-34 1.2E-38 311.0 33.9 324 105-533 14-482 (773)
75 TIGR00603 rad25 DNA repair hel 100.0 3.2E-34 7E-39 295.9 28.2 315 106-534 255-611 (732)
76 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-34 3.7E-39 294.7 25.5 343 101-538 105-499 (1230)
77 KOG0354 DEAD-box like helicase 100.0 6.3E-34 1.4E-38 287.6 26.8 390 105-539 61-538 (746)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-33 3.5E-38 277.2 25.6 302 110-515 1-357 (357)
79 PRK11131 ATP-dependent RNA hel 100.0 8.4E-32 1.8E-36 291.4 27.1 304 110-534 78-415 (1294)
80 PRK04914 ATP-dependent helicas 100.0 1.8E-30 3.9E-35 277.6 30.6 124 423-546 492-619 (956)
81 KOG0950 DNA polymerase theta/e 100.0 7.5E-31 1.6E-35 267.1 20.9 352 90-539 207-620 (1008)
82 COG1061 SSL2 DNA or RNA helica 100.0 5.8E-30 1.2E-34 258.1 27.0 294 106-516 36-375 (442)
83 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.8E-30 1.5E-34 277.8 27.3 305 113-534 74-408 (1283)
84 PRK05580 primosome assembly pr 100.0 4.9E-29 1.1E-33 263.6 32.6 313 106-537 144-556 (679)
85 COG1200 RecG RecG-like helicas 100.0 7.4E-29 1.6E-33 247.3 29.3 317 90-531 246-592 (677)
86 KOG0951 RNA helicase BRR2, DEA 100.0 1.7E-29 3.6E-34 261.6 24.0 359 90-538 295-710 (1674)
87 COG4889 Predicted helicase [Ge 100.0 2.4E-31 5.1E-36 266.0 8.1 384 29-517 89-572 (1518)
88 PRK12899 secA preprotein trans 100.0 4.1E-28 8.8E-33 251.8 29.8 412 87-532 65-683 (970)
89 PRK13104 secA preprotein trans 100.0 1E-28 2.2E-33 256.9 23.9 392 102-532 79-589 (896)
90 PRK12906 secA preprotein trans 100.0 2.2E-28 4.7E-33 253.3 25.3 393 101-532 76-555 (796)
91 PRK09694 helicase Cas3; Provis 100.0 7.5E-28 1.6E-32 256.0 27.8 316 104-519 284-664 (878)
92 PRK12904 preprotein translocas 100.0 3.5E-28 7.6E-33 252.8 24.5 389 102-532 78-575 (830)
93 TIGR00595 priA primosomal prot 100.0 1.3E-27 2.8E-32 243.8 26.6 291 125-531 1-382 (505)
94 KOG0947 Cytoplasmic exosomal R 100.0 2.5E-28 5.4E-33 247.1 20.9 314 102-530 294-723 (1248)
95 KOG0948 Nuclear exosomal RNA h 100.0 5.7E-29 1.2E-33 245.8 15.0 314 106-530 129-539 (1041)
96 PRK11448 hsdR type I restricti 100.0 2.6E-27 5.7E-32 259.1 24.7 315 106-519 413-802 (1123)
97 cd00268 DEADc DEAD-box helicas 100.0 5E-27 1.1E-31 214.8 18.0 166 86-270 1-172 (203)
98 COG4098 comFA Superfamily II D 99.9 5.6E-26 1.2E-30 206.1 23.8 315 106-542 97-428 (441)
99 COG4581 Superfamily II RNA hel 99.9 2.9E-26 6.2E-31 241.4 23.0 319 98-530 112-537 (1041)
100 PRK13107 preprotein translocas 99.9 1.4E-25 3E-30 232.8 26.2 395 102-532 79-593 (908)
101 COG1197 Mfd Transcription-repa 99.9 6.5E-25 1.4E-29 231.3 30.6 326 91-542 579-931 (1139)
102 PLN03142 Probable chromatin-re 99.9 2.4E-25 5.2E-30 239.1 26.6 110 422-531 485-600 (1033)
103 TIGR00631 uvrb excinuclease AB 99.9 2.3E-22 5.1E-27 210.1 32.1 135 403-541 424-564 (655)
104 COG1643 HrpA HrpA-like helicas 99.9 3.9E-23 8.4E-28 216.7 25.0 311 108-533 52-390 (845)
105 TIGR01407 dinG_rel DnaQ family 99.9 2.4E-22 5.1E-27 219.6 32.1 421 91-543 231-829 (850)
106 COG1110 Reverse gyrase [DNA re 99.9 1.5E-22 3.3E-27 208.0 28.3 321 95-501 71-416 (1187)
107 KOG0922 DEAH-box RNA helicase 99.9 5.9E-23 1.3E-27 203.2 22.6 313 108-534 53-394 (674)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 1.4E-23 3E-28 186.2 13.9 141 108-270 1-148 (169)
109 COG1203 CRISPR-associated heli 99.9 1.2E-22 2.6E-27 217.3 22.5 330 107-537 196-557 (733)
110 COG4096 HsdR Type I site-speci 99.9 4E-22 8.8E-27 201.9 24.4 339 105-517 164-525 (875)
111 KOG0385 Chromatin remodeling c 99.9 9.4E-23 2E-27 202.9 18.4 396 106-534 167-603 (971)
112 COG0556 UvrB Helicase subunit 99.9 1E-21 2.2E-26 188.8 23.6 169 349-533 385-560 (663)
113 PRK12900 secA preprotein trans 99.9 1.5E-22 3.3E-27 211.2 19.3 130 398-532 575-713 (1025)
114 PRK05298 excinuclease ABC subu 99.9 4.3E-21 9.3E-26 202.4 30.4 140 404-547 429-583 (652)
115 PRK07246 bifunctional ATP-depe 99.9 1.1E-20 2.3E-25 203.5 30.8 407 103-547 243-802 (820)
116 TIGR00348 hsdR type I site-spe 99.9 5.4E-21 1.2E-25 202.5 25.8 117 424-543 514-659 (667)
117 PRK12326 preprotein translocas 99.9 8.9E-21 1.9E-25 192.7 24.4 391 101-532 74-549 (764)
118 KOG0920 ATP-dependent RNA heli 99.9 9.7E-21 2.1E-25 197.9 24.2 319 106-532 173-546 (924)
119 KOG0949 Predicted helicase, DE 99.9 1.8E-21 3.9E-26 198.2 17.3 147 106-270 511-661 (1330)
120 KOG1123 RNA polymerase II tran 99.9 1.7E-21 3.7E-26 185.1 15.7 339 106-535 302-658 (776)
121 KOG0926 DEAH-box RNA helicase 99.9 9.9E-21 2.1E-25 189.1 20.9 314 113-531 263-705 (1172)
122 KOG0923 mRNA splicing factor A 99.9 3.7E-20 7.9E-25 181.7 19.6 315 103-529 262-605 (902)
123 KOG0924 mRNA splicing factor A 99.8 1.2E-19 2.6E-24 178.5 20.9 309 106-530 356-697 (1042)
124 PRK13103 secA preprotein trans 99.8 2.3E-19 5E-24 187.0 23.8 392 102-532 79-593 (913)
125 KOG0387 Transcription-coupled 99.8 3.4E-19 7.3E-24 178.7 22.3 397 106-541 205-669 (923)
126 PRK08074 bifunctional ATP-depe 99.8 8.9E-19 1.9E-23 192.3 27.8 134 407-542 737-907 (928)
127 TIGR03117 cas_csf4 CRISPR-asso 99.8 4.8E-18 1E-22 174.9 30.6 130 409-542 457-629 (636)
128 KOG0384 Chromodomain-helicase 99.8 1.2E-19 2.7E-24 189.5 15.2 118 422-539 697-822 (1373)
129 COG1198 PriA Primosomal protei 99.8 1.1E-18 2.5E-23 180.7 21.2 318 106-539 198-612 (730)
130 PRK12903 secA preprotein trans 99.8 2.3E-18 5E-23 177.7 21.9 390 102-532 75-541 (925)
131 KOG1000 Chromatin remodeling p 99.8 2.4E-18 5.3E-23 163.7 18.5 391 105-531 197-604 (689)
132 KOG0389 SNF2 family DNA-depend 99.8 1.6E-18 3.4E-23 173.7 17.3 126 405-533 761-891 (941)
133 CHL00122 secA preprotein trans 99.8 3.8E-18 8.3E-23 177.2 19.8 352 101-490 72-491 (870)
134 KOG0390 DNA repair protein, SN 99.8 1.6E-17 3.4E-22 171.1 24.0 93 438-530 609-707 (776)
135 KOG4150 Predicted ATP-dependen 99.8 1.4E-18 3E-23 167.8 14.7 334 99-530 279-640 (1034)
136 COG1199 DinG Rad3-related DNA 99.8 5.1E-17 1.1E-21 174.7 26.7 131 407-542 464-631 (654)
137 KOG0925 mRNA splicing factor A 99.8 2.1E-17 4.6E-22 157.1 19.4 329 83-530 24-387 (699)
138 cd00079 HELICc Helicase superf 99.8 6E-18 1.3E-22 143.1 13.7 119 405-526 12-131 (131)
139 PRK12902 secA preprotein trans 99.8 6.4E-17 1.4E-21 167.8 21.8 348 102-490 82-506 (939)
140 KOG0953 Mitochondrial RNA heli 99.8 2.6E-17 5.7E-22 159.1 17.6 264 124-530 194-477 (700)
141 PRK11747 dinG ATP-dependent DN 99.8 2.5E-15 5.4E-20 160.2 33.3 130 406-542 519-688 (697)
142 smart00487 DEXDc DEAD-like hel 99.7 2.7E-17 5.9E-22 149.9 15.2 147 101-269 3-157 (201)
143 PF00271 Helicase_C: Helicase 99.7 6.5E-18 1.4E-22 128.2 8.4 77 442-518 1-78 (78)
144 PF06862 DUF1253: Protein of u 99.7 6E-15 1.3E-19 144.5 28.0 320 160-539 31-424 (442)
145 KOG0951 RNA helicase BRR2, DEA 99.7 1.3E-16 2.7E-21 167.1 16.0 323 107-548 1144-1509(1674)
146 KOG0386 Chromatin remodeling c 99.7 1.2E-16 2.6E-21 164.3 12.8 399 106-540 394-846 (1157)
147 KOG0392 SNF2 family DNA-depend 99.7 6.3E-16 1.4E-20 161.6 17.6 110 423-532 1339-1456(1549)
148 KOG1002 Nucleotide excision re 99.7 5E-15 1.1E-19 141.3 18.4 128 405-533 620-752 (791)
149 TIGR00604 rad3 DNA repair heli 99.7 1.2E-13 2.5E-18 148.8 30.6 120 407-530 507-674 (705)
150 PRK12901 secA preprotein trans 99.6 7.8E-15 1.7E-19 154.0 19.6 131 398-532 605-743 (1112)
151 KOG2340 Uncharacterized conser 99.6 2.3E-14 5E-19 138.0 16.4 376 103-539 213-677 (698)
152 cd00046 DEXDc DEAD-like helica 99.6 2.2E-14 4.7E-19 122.9 14.8 116 122-260 1-122 (144)
153 PF04851 ResIII: Type III rest 99.6 6.6E-15 1.4E-19 132.4 12.0 126 106-255 3-160 (184)
154 smart00490 HELICc helicase sup 99.6 4.4E-15 9.6E-20 114.0 8.8 80 439-518 2-82 (82)
155 KOG4439 RNA polymerase II tran 99.6 1.2E-13 2.6E-18 137.4 19.3 122 401-524 725-850 (901)
156 KOG0391 SNF2 family DNA-depend 99.5 8E-12 1.7E-16 130.4 21.5 112 422-533 1274-1390(1958)
157 TIGR02562 cas3_yersinia CRISPR 99.4 1.1E-11 2.3E-16 131.5 21.0 91 427-520 759-882 (1110)
158 KOG0388 SNF2 family DNA-depend 99.4 7.5E-12 1.6E-16 124.7 18.1 110 422-531 1042-1155(1185)
159 PRK14873 primosome assembly pr 99.4 2.8E-11 6.2E-16 126.9 23.2 95 125-252 164-268 (665)
160 PF02399 Herpes_ori_bp: Origin 99.4 5.5E-11 1.2E-15 123.0 21.0 102 422-529 280-387 (824)
161 COG0553 HepA Superfamily II DN 99.3 9E-11 2E-15 131.8 19.1 124 405-531 692-823 (866)
162 PF00176 SNF2_N: SNF2 family N 99.3 9.3E-11 2E-15 114.2 14.9 117 120-253 24-146 (299)
163 COG0653 SecA Preprotein transl 99.2 1.2E-10 2.6E-15 121.4 14.9 382 107-531 79-546 (822)
164 smart00488 DEXDc2 DEAD-like he 99.2 7.2E-11 1.6E-15 112.7 11.6 73 106-189 8-84 (289)
165 smart00489 DEXDc3 DEAD-like he 99.2 7.2E-11 1.6E-15 112.7 11.6 73 106-189 8-84 (289)
166 KOG1015 Transcription regulato 99.2 2.8E-10 6E-15 117.1 16.2 104 422-525 1140-1270(1567)
167 PF07652 Flavi_DEAD: Flaviviru 99.2 1.8E-10 4E-15 94.2 9.6 105 120-253 3-107 (148)
168 KOG0921 Dosage compensation co 99.1 2E-09 4.3E-14 110.5 15.9 404 40-530 320-774 (1282)
169 COG0610 Type I site-specific r 99.1 6.2E-09 1.3E-13 114.5 20.0 111 122-253 274-388 (962)
170 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.8E-08 3.8E-13 93.5 9.6 131 101-254 73-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.8 1.3E-09 2.8E-14 114.0 1.5 140 106-266 927-1070(1230)
172 PRK15483 type III restriction- 98.6 2.7E-07 5.8E-12 99.1 13.0 74 473-546 501-584 (986)
173 KOG1016 Predicted DNA helicase 98.6 7.3E-07 1.6E-11 90.7 12.4 116 423-538 718-855 (1387)
174 KOG1133 Helicase of the DEAD s 98.5 0.00013 2.7E-09 74.4 27.7 117 423-542 628-793 (821)
175 COG3587 Restriction endonuclea 98.5 6.2E-06 1.4E-10 85.5 18.6 75 470-544 480-567 (985)
176 PF13086 AAA_11: AAA domain; P 98.5 3.4E-07 7.3E-12 85.6 8.5 73 107-188 2-75 (236)
177 KOG1001 Helicase-like transcri 98.5 4.5E-07 9.8E-12 95.1 9.3 121 403-525 520-643 (674)
178 PF13307 Helicase_C_2: Helicas 98.4 4.8E-07 1E-11 79.2 6.0 106 423-530 8-150 (167)
179 TIGR00596 rad1 DNA repair prot 98.3 8.4E-06 1.8E-10 87.7 14.3 51 213-267 7-57 (814)
180 PF13872 AAA_34: P-loop contai 98.3 1.3E-05 2.8E-10 74.7 13.6 144 87-256 24-187 (303)
181 KOG1802 RNA helicase nonsense 98.2 3.7E-06 8E-11 84.5 8.4 85 99-206 403-487 (935)
182 PF12340 DUF3638: Protein of u 98.2 2.3E-05 5E-10 70.4 11.5 152 85-255 4-186 (229)
183 PF13604 AAA_30: AAA domain; P 98.1 6.3E-06 1.4E-10 74.2 6.9 63 106-185 1-65 (196)
184 KOG1803 DNA helicase [Replicat 98.0 8.6E-06 1.9E-10 81.6 6.1 65 106-187 185-250 (649)
185 COG3421 Uncharacterized protei 98.0 0.00053 1.2E-08 68.8 17.1 111 126-253 2-124 (812)
186 PF09848 DUF2075: Uncharacteri 97.9 3.4E-05 7.3E-10 76.5 8.7 108 123-268 3-117 (352)
187 KOG1132 Helicase of the DEAD s 97.8 0.00011 2.3E-09 76.9 9.9 34 106-139 21-58 (945)
188 PF13245 AAA_19: Part of AAA d 97.8 9.8E-05 2.1E-09 54.7 7.0 53 121-186 10-62 (76)
189 smart00492 HELICc3 helicase su 97.8 0.00023 4.9E-09 60.0 9.6 93 437-529 4-137 (141)
190 TIGR01447 recD exodeoxyribonuc 97.7 0.00052 1.1E-08 72.0 12.9 136 108-270 147-284 (586)
191 smart00491 HELICc2 helicase su 97.6 0.00041 8.9E-09 58.5 8.6 93 437-529 4-138 (142)
192 TIGR01448 recD_rel helicase, p 97.5 0.00037 8E-09 75.4 9.9 66 102-183 320-385 (720)
193 PRK10875 recD exonuclease V su 97.5 0.00094 2E-08 70.3 12.1 122 108-253 154-277 (615)
194 KOG1131 RNA polymerase II tran 97.5 0.00087 1.9E-08 66.1 10.7 79 423-502 529-623 (755)
195 PF00580 UvrD-helicase: UvrD/R 97.1 0.0011 2.5E-08 64.7 7.5 71 107-192 1-71 (315)
196 PRK13889 conjugal transfer rel 97.1 0.0027 5.9E-08 70.1 10.9 63 102-182 343-406 (988)
197 TIGR00376 DNA helicase, putati 97.1 0.0019 4.1E-08 68.9 8.9 67 106-189 157-224 (637)
198 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0043 9.4E-08 67.5 11.7 60 106-182 352-412 (744)
199 PF02562 PhoH: PhoH-like prote 97.0 0.00052 1.1E-08 61.3 3.6 60 104-178 2-61 (205)
200 KOG0383 Predicted helicase [Ge 96.9 5.5E-05 1.2E-09 78.8 -4.8 65 421-486 628-696 (696)
201 PRK13826 Dtr system oriT relax 96.8 0.0087 1.9E-07 66.7 11.3 75 90-182 366-441 (1102)
202 PF13401 AAA_22: AAA domain; P 96.8 0.0024 5.2E-08 53.3 5.5 19 121-139 4-22 (131)
203 COG1875 NYN ribonuclease and A 96.8 0.015 3.3E-07 55.5 11.0 68 101-182 223-292 (436)
204 KOG1805 DNA replication helica 96.8 0.0045 9.8E-08 65.9 8.0 117 106-254 669-809 (1100)
205 KOG0298 DEAD box-containing he 96.7 0.0033 7.2E-08 68.7 7.1 101 120-228 373-483 (1394)
206 PRK06921 hypothetical protein; 96.6 0.016 3.5E-07 54.8 9.8 27 120-147 116-142 (266)
207 PF05970 PIF1: PIF1-like helic 96.5 0.0049 1.1E-07 61.4 6.4 59 107-182 2-66 (364)
208 PRK08181 transposase; Validate 96.5 0.0074 1.6E-07 56.9 7.1 28 119-147 104-131 (269)
209 PRK08727 hypothetical protein; 96.5 0.024 5.3E-07 52.5 10.1 25 122-147 42-66 (233)
210 KOG0989 Replication factor C, 96.4 0.014 3E-07 54.5 8.0 25 121-145 57-81 (346)
211 PRK06526 transposase; Provisio 96.4 0.0062 1.4E-07 57.0 5.9 24 117-140 94-117 (254)
212 TIGR01075 uvrD DNA helicase II 96.4 0.015 3.2E-07 63.6 9.4 112 105-252 3-114 (715)
213 PF00308 Bac_DnaA: Bacterial d 96.3 0.036 7.9E-07 50.8 10.4 27 122-149 35-61 (219)
214 PRK10536 hypothetical protein; 96.3 0.007 1.5E-07 55.8 5.3 47 102-148 55-101 (262)
215 PRK04296 thymidine kinase; Pro 96.3 0.0053 1.1E-07 55.0 4.4 35 123-174 4-38 (190)
216 PRK14086 dnaA chromosomal repl 96.3 0.037 8E-07 57.9 11.0 25 122-147 315-339 (617)
217 COG1484 DnaC DNA replication p 96.3 0.0066 1.4E-07 56.9 5.2 51 120-188 104-154 (254)
218 PRK06893 DNA replication initi 96.2 0.026 5.7E-07 52.2 9.1 25 122-147 40-64 (229)
219 PRK11773 uvrD DNA-dependent he 96.2 0.02 4.3E-07 62.6 9.1 88 106-227 9-96 (721)
220 cd00009 AAA The AAA+ (ATPases 96.1 0.029 6.3E-07 47.4 8.4 17 121-137 19-35 (151)
221 PRK05642 DNA replication initi 96.1 0.039 8.4E-07 51.2 9.5 16 122-137 46-61 (234)
222 COG2805 PilT Tfp pilus assembl 96.1 0.011 2.3E-07 55.0 5.5 52 77-148 99-151 (353)
223 PRK06835 DNA replication prote 96.1 0.031 6.8E-07 54.4 8.8 28 120-148 182-209 (329)
224 PRK10919 ATP-dependent DNA hel 96.0 0.016 3.5E-07 62.6 7.4 70 106-190 2-71 (672)
225 PRK07952 DNA replication prote 96.0 0.039 8.5E-07 51.2 8.7 26 122-148 100-125 (244)
226 PF05621 TniB: Bacterial TniB 95.9 0.027 5.8E-07 53.2 7.4 103 122-260 62-164 (302)
227 PRK14722 flhF flagellar biosyn 95.9 0.046 1E-06 53.9 9.3 24 120-143 136-159 (374)
228 PF05127 Helicase_RecD: Helica 95.9 0.0057 1.2E-07 53.2 2.7 99 125-253 1-102 (177)
229 PRK12723 flagellar biosynthesi 95.8 0.097 2.1E-06 52.1 11.0 18 122-139 175-192 (388)
230 PRK11054 helD DNA helicase IV; 95.7 0.046 9.9E-07 58.9 9.3 74 102-190 192-265 (684)
231 PRK12377 putative replication 95.7 0.049 1.1E-06 50.7 8.1 27 121-148 101-127 (248)
232 TIGR02760 TraI_TIGR conjugativ 95.6 0.4 8.6E-06 58.1 17.4 62 106-184 429-492 (1960)
233 smart00382 AAA ATPases associa 95.6 0.016 3.5E-07 48.6 4.5 17 121-137 2-18 (148)
234 PRK14087 dnaA chromosomal repl 95.6 0.068 1.5E-06 54.7 9.5 50 122-187 142-191 (450)
235 TIGR01074 rep ATP-dependent DN 95.6 0.035 7.6E-07 60.4 8.0 70 107-191 2-71 (664)
236 PF03354 Terminase_1: Phage Te 95.6 0.053 1.1E-06 56.3 8.8 72 109-193 1-81 (477)
237 PRK08084 DNA replication initi 95.6 0.11 2.3E-06 48.4 9.9 18 121-138 45-62 (235)
238 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.11 2.4E-06 47.9 9.9 19 120-138 37-55 (226)
239 PRK14712 conjugal transfer nic 95.5 0.047 1E-06 63.3 8.5 62 106-182 835-900 (1623)
240 PRK14974 cell division protein 95.4 0.14 3.1E-06 49.9 10.7 17 122-138 141-157 (336)
241 PRK00149 dnaA chromosomal repl 95.4 0.1 2.2E-06 53.8 10.1 26 122-148 149-174 (450)
242 PF13871 Helicase_C_4: Helicas 95.4 0.07 1.5E-06 50.0 8.0 65 465-529 52-126 (278)
243 PHA02533 17 large terminase pr 95.4 0.15 3.3E-06 53.2 11.3 72 106-192 59-130 (534)
244 PF02456 Adeno_IVa2: Adenoviru 95.4 0.037 8.1E-07 51.6 6.0 41 124-179 90-130 (369)
245 COG1474 CDC6 Cdc6-related prot 95.3 0.051 1.1E-06 53.8 7.4 26 122-148 43-68 (366)
246 COG3973 Superfamily I DNA and 95.3 0.064 1.4E-06 54.7 7.9 91 89-191 187-285 (747)
247 PRK12422 chromosomal replicati 95.3 0.11 2.3E-06 53.1 9.8 25 122-147 142-166 (445)
248 cd01120 RecA-like_NTPases RecA 95.3 0.063 1.4E-06 46.4 7.1 16 124-139 2-17 (165)
249 PRK14088 dnaA chromosomal repl 95.2 0.097 2.1E-06 53.5 9.3 26 122-148 131-156 (440)
250 TIGR00362 DnaA chromosomal rep 95.2 0.11 2.4E-06 52.8 9.7 26 122-148 137-162 (405)
251 PRK05707 DNA polymerase III su 95.2 0.046 1E-06 53.3 6.6 41 106-147 3-47 (328)
252 KOG1513 Nuclear helicase MOP-3 95.2 0.017 3.7E-07 60.2 3.6 128 106-253 264-417 (1300)
253 TIGR01073 pcrA ATP-dependent D 95.1 0.075 1.6E-06 58.4 8.7 90 105-228 3-92 (726)
254 PHA03333 putative ATPase subun 95.1 0.5 1.1E-05 49.8 13.8 58 120-193 186-243 (752)
255 PF14617 CMS1: U3-containing 9 95.1 0.026 5.5E-07 52.2 4.2 82 163-252 123-212 (252)
256 COG2256 MGS1 ATPase related to 95.1 0.18 3.9E-06 49.2 9.8 47 122-188 49-95 (436)
257 PF00004 AAA: ATPase family as 95.1 0.15 3.3E-06 42.2 8.7 14 124-137 1-14 (132)
258 COG0593 DnaA ATPase involved i 95.0 0.19 4.2E-06 49.9 10.2 17 121-137 113-129 (408)
259 KOG0991 Replication factor C, 94.9 0.035 7.7E-07 49.6 4.4 25 122-147 49-73 (333)
260 cd01124 KaiC KaiC is a circadi 94.9 0.077 1.7E-06 47.3 6.8 48 124-189 2-49 (187)
261 TIGR03499 FlhF flagellar biosy 94.9 0.1 2.3E-06 49.8 7.9 20 121-140 194-213 (282)
262 PRK13894 conjugal transfer ATP 94.9 0.058 1.3E-06 52.3 6.1 65 97-178 125-190 (319)
263 KOG0738 AAA+-type ATPase [Post 94.8 0.32 6.9E-06 47.2 10.6 56 82-137 181-261 (491)
264 PTZ00112 origin recognition co 94.8 0.24 5.1E-06 53.6 10.6 23 124-147 784-806 (1164)
265 PRK08769 DNA polymerase III su 94.7 0.054 1.2E-06 52.4 5.5 42 105-147 3-51 (319)
266 PRK14964 DNA polymerase III su 94.7 0.18 3.9E-06 51.8 9.5 20 122-141 36-55 (491)
267 PRK08116 hypothetical protein; 94.7 0.08 1.7E-06 50.2 6.6 26 122-148 115-140 (268)
268 PRK05580 primosome assembly pr 94.6 0.28 6.2E-06 53.1 11.3 92 404-499 173-266 (679)
269 PF05496 RuvB_N: Holliday junc 94.6 0.042 9.1E-07 49.5 4.1 17 122-138 51-67 (233)
270 PRK13709 conjugal transfer nic 94.5 0.12 2.6E-06 60.8 8.7 64 106-182 967-1032(1747)
271 COG1435 Tdk Thymidine kinase [ 94.5 0.27 5.8E-06 43.1 8.6 104 122-268 5-108 (201)
272 COG3972 Superfamily I DNA and 94.5 2 4.3E-05 43.2 15.4 72 104-191 160-231 (660)
273 TIGR00595 priA primosomal prot 94.5 0.28 6.1E-06 51.1 10.4 91 405-499 9-101 (505)
274 KOG0741 AAA+-type ATPase [Post 94.5 0.17 3.7E-06 51.0 8.2 59 76-137 208-272 (744)
275 PF01695 IstB_IS21: IstB-like 94.4 0.098 2.1E-06 46.2 6.1 48 117-182 43-90 (178)
276 PRK00411 cdc6 cell division co 94.4 0.29 6.2E-06 49.6 10.3 24 122-146 56-79 (394)
277 PRK10917 ATP-dependent DNA hel 94.3 0.28 6.1E-06 53.3 10.4 75 423-497 309-389 (681)
278 COG1444 Predicted P-loop ATPas 94.3 0.41 8.8E-06 51.2 11.1 125 99-253 207-335 (758)
279 PRK04195 replication factor C 94.3 0.41 9E-06 49.8 11.3 18 121-138 39-56 (482)
280 PRK13833 conjugal transfer pro 94.2 0.11 2.4E-06 50.3 6.3 62 100-178 124-186 (323)
281 PHA02544 44 clamp loader, smal 94.2 0.25 5.3E-06 48.3 9.0 39 84-137 18-59 (316)
282 PRK14873 primosome assembly pr 94.2 0.43 9.4E-06 51.2 11.2 92 404-499 171-265 (665)
283 TIGR02525 plasmid_TraJ plasmid 94.2 0.13 2.8E-06 50.9 6.8 46 83-147 129-174 (372)
284 TIGR01547 phage_term_2 phage t 94.1 0.18 3.9E-06 51.1 8.0 57 124-194 4-61 (396)
285 TIGR02785 addA_Gpos recombinat 94.1 0.14 3E-06 59.5 7.9 68 107-190 2-69 (1232)
286 PRK07003 DNA polymerase III su 93.9 0.36 7.7E-06 51.7 9.7 18 123-140 40-57 (830)
287 PRK11889 flhF flagellar biosyn 93.8 0.82 1.8E-05 45.3 11.4 22 122-143 242-263 (436)
288 TIGR02688 conserved hypothetic 93.8 0.17 3.8E-06 50.2 6.9 24 116-139 204-227 (449)
289 TIGR02881 spore_V_K stage V sp 93.8 0.34 7.4E-06 45.8 8.8 18 122-139 43-60 (261)
290 TIGR02782 TrbB_P P-type conjug 93.8 0.17 3.7E-06 48.8 6.7 65 97-178 109-174 (299)
291 PRK08903 DnaA regulatory inact 93.8 0.68 1.5E-05 42.7 10.6 19 120-138 41-59 (227)
292 PRK07764 DNA polymerase III su 93.7 0.2 4.3E-06 55.0 7.8 21 122-142 38-58 (824)
293 PRK12727 flagellar biosynthesi 93.7 0.49 1.1E-05 48.7 9.9 21 120-140 349-369 (559)
294 KOG0701 dsRNA-specific nucleas 93.7 0.045 9.7E-07 62.8 2.9 94 425-518 293-399 (1606)
295 COG1419 FlhF Flagellar GTP-bin 93.6 0.3 6.4E-06 48.1 8.0 89 121-252 203-292 (407)
296 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.1 2.2E-06 51.5 5.0 48 80-146 111-158 (358)
297 PLN03025 replication factor C 93.6 0.16 3.5E-06 49.6 6.4 18 122-139 35-52 (319)
298 PRK11823 DNA repair protein Ra 93.5 0.46 9.9E-06 48.7 9.7 54 119-190 78-131 (446)
299 TIGR02760 TraI_TIGR conjugativ 93.5 0.24 5.1E-06 59.9 8.6 63 105-182 1018-1084(1960)
300 KOG0733 Nuclear AAA ATPase (VC 93.4 1.3 2.7E-05 45.9 12.2 59 76-137 500-561 (802)
301 PRK14956 DNA polymerase III su 93.4 0.14 3.1E-06 52.0 5.7 19 122-140 41-59 (484)
302 PRK05703 flhF flagellar biosyn 93.3 0.37 7.9E-06 48.9 8.6 21 121-141 221-241 (424)
303 KOG0298 DEAD box-containing he 93.2 0.15 3.3E-06 56.4 5.9 99 419-520 1216-1314(1394)
304 PRK14958 DNA polymerase III su 93.2 0.22 4.8E-06 51.7 7.0 19 122-140 39-57 (509)
305 PRK08699 DNA polymerase III su 93.2 0.51 1.1E-05 46.0 9.0 34 107-140 2-40 (325)
306 PRK14951 DNA polymerase III su 93.2 0.41 8.8E-06 50.8 8.9 18 123-140 40-57 (618)
307 PTZ00293 thymidine kinase; Pro 93.2 0.41 8.8E-06 43.1 7.6 38 121-175 4-41 (211)
308 PRK08691 DNA polymerase III su 93.2 0.47 1E-05 50.5 9.2 19 122-140 39-57 (709)
309 TIGR00643 recG ATP-dependent D 93.2 0.53 1.1E-05 50.8 10.0 76 423-498 283-364 (630)
310 cd01121 Sms Sms (bacterial rad 93.1 0.67 1.5E-05 46.1 9.8 53 119-189 80-132 (372)
311 COG4962 CpaF Flp pilus assembl 93.0 0.12 2.7E-06 49.4 4.3 61 103-181 154-215 (355)
312 PRK13342 recombination factor 92.9 0.3 6.6E-06 49.6 7.3 17 122-138 37-53 (413)
313 cd01126 TraG_VirD4 The TraG/Tr 92.9 0.086 1.9E-06 53.1 3.4 48 123-189 1-48 (384)
314 PRK13341 recombination factor 92.9 0.46 9.9E-06 51.6 8.9 17 122-138 53-69 (725)
315 PF05876 Terminase_GpA: Phage 92.9 0.065 1.4E-06 56.4 2.5 71 106-192 16-89 (557)
316 PHA03368 DNA packaging termina 92.8 1.8 3.8E-05 45.7 12.5 107 122-255 255-366 (738)
317 PRK14963 DNA polymerase III su 92.8 0.33 7.2E-06 50.4 7.5 23 123-146 38-60 (504)
318 PRK14952 DNA polymerase III su 92.8 0.25 5.5E-06 52.0 6.6 19 123-141 37-55 (584)
319 PRK14960 DNA polymerase III su 92.7 0.26 5.7E-06 51.9 6.5 19 122-140 38-56 (702)
320 PF00265 TK: Thymidine kinase; 92.7 0.32 6.8E-06 42.7 6.2 35 124-175 4-38 (176)
321 PRK06871 DNA polymerase III su 92.5 0.3 6.5E-06 47.4 6.3 40 107-147 3-49 (325)
322 PRK06645 DNA polymerase III su 92.5 0.33 7.1E-06 50.3 7.0 19 122-140 44-62 (507)
323 PF06733 DEAD_2: DEAD_2; Inte 92.5 0.098 2.1E-06 46.1 2.7 43 211-255 117-159 (174)
324 PRK05563 DNA polymerase III su 92.5 0.54 1.2E-05 49.6 8.6 20 122-141 39-58 (559)
325 COG5008 PilU Tfp pilus assembl 92.4 0.13 2.8E-06 47.0 3.4 15 123-137 129-143 (375)
326 TIGR00580 mfd transcription-re 92.4 0.76 1.6E-05 51.4 10.0 75 423-497 499-579 (926)
327 PRK09111 DNA polymerase III su 92.3 0.36 7.7E-06 51.2 7.0 20 122-141 47-66 (598)
328 PF02534 T4SS-DNA_transf: Type 92.3 0.18 4E-06 52.3 4.9 50 122-190 45-94 (469)
329 PRK06964 DNA polymerase III su 92.2 0.43 9.3E-06 46.7 7.1 40 107-147 2-46 (342)
330 PRK05973 replicative DNA helic 92.2 0.39 8.4E-06 44.3 6.3 82 89-189 23-114 (237)
331 PF13173 AAA_14: AAA domain 92.2 1 2.2E-05 37.2 8.4 27 241-269 61-87 (128)
332 COG1198 PriA Primosomal protei 92.1 0.69 1.5E-05 49.7 8.9 95 399-497 223-319 (730)
333 PRK07994 DNA polymerase III su 92.0 0.47 1E-05 50.4 7.5 18 124-141 41-58 (647)
334 PRK04328 hypothetical protein; 91.9 0.84 1.8E-05 42.8 8.5 53 120-190 22-74 (249)
335 PRK12323 DNA polymerase III su 91.9 0.36 7.7E-06 50.9 6.3 19 122-140 39-57 (700)
336 PRK14949 DNA polymerase III su 91.9 0.33 7.1E-06 53.0 6.3 18 123-140 40-57 (944)
337 COG4626 Phage terminase-like p 91.8 0.96 2.1E-05 46.3 9.1 75 105-193 60-145 (546)
338 PRK14723 flhF flagellar biosyn 91.8 0.54 1.2E-05 50.7 7.7 22 121-142 185-206 (767)
339 PRK12402 replication factor C 91.8 1.2 2.5E-05 44.0 9.8 16 123-138 38-53 (337)
340 PRK13897 type IV secretion sys 91.8 0.22 4.8E-06 52.6 4.8 49 122-189 159-207 (606)
341 KOG0729 26S proteasome regulat 91.7 1.4 3E-05 40.5 9.0 57 81-138 171-228 (435)
342 COG1110 Reverse gyrase [DNA re 91.6 0.45 9.7E-06 51.9 6.7 91 422-512 123-230 (1187)
343 PRK14962 DNA polymerase III su 91.5 0.48 1E-05 48.8 6.8 18 123-140 38-55 (472)
344 PRK03992 proteasome-activating 91.5 0.57 1.2E-05 47.2 7.3 55 81-138 125-182 (389)
345 TIGR01420 pilT_fam pilus retra 91.5 0.41 8.9E-06 47.3 6.1 17 121-137 122-138 (343)
346 TIGR01243 CDC48 AAA family ATP 91.4 0.63 1.4E-05 51.3 8.1 54 82-138 448-504 (733)
347 PRK06067 flagellar accessory p 91.4 0.67 1.5E-05 43.0 7.2 52 120-189 24-75 (234)
348 PRK10436 hypothetical protein; 91.2 0.24 5.1E-06 50.7 4.2 25 121-146 218-242 (462)
349 TIGR03015 pepcterm_ATPase puta 91.2 0.24 5.3E-06 47.1 4.1 31 107-137 24-59 (269)
350 PRK00080 ruvB Holliday junctio 91.2 0.54 1.2E-05 46.2 6.6 17 122-138 52-68 (328)
351 cd01130 VirB11-like_ATPase Typ 91.2 0.23 5E-06 44.2 3.7 32 106-137 9-41 (186)
352 PRK14965 DNA polymerase III su 91.1 0.56 1.2E-05 49.8 6.9 19 122-140 39-57 (576)
353 PF12846 AAA_10: AAA-like doma 91.0 0.39 8.5E-06 46.4 5.5 43 121-180 1-43 (304)
354 COG1219 ClpX ATP-dependent pro 91.0 0.18 3.8E-06 47.6 2.7 17 122-138 98-114 (408)
355 PRK13851 type IV secretion sys 91.0 0.29 6.4E-06 47.9 4.5 20 118-137 159-178 (344)
356 PRK14961 DNA polymerase III su 91.0 0.99 2.2E-05 45.0 8.3 17 123-139 40-56 (363)
357 TIGR01243 CDC48 AAA family ATP 90.9 2.3 5E-05 46.9 11.8 53 82-137 173-228 (733)
358 PF03237 Terminase_6: Terminas 90.8 1.4 2.9E-05 44.1 9.3 109 125-259 1-115 (384)
359 cd01122 GP4d_helicase GP4d_hel 90.7 0.24 5.3E-06 47.1 3.6 52 94-145 3-54 (271)
360 COG2804 PulE Type II secretory 90.6 0.28 6.1E-06 49.6 4.0 38 108-146 243-282 (500)
361 PRK07993 DNA polymerase III su 90.4 0.48 1E-05 46.5 5.4 41 106-147 2-49 (334)
362 PF13177 DNA_pol3_delta2: DNA 90.4 1.4 3E-05 38.2 7.7 25 122-147 20-44 (162)
363 PRK06090 DNA polymerase III su 90.4 0.56 1.2E-05 45.5 5.7 41 106-147 3-50 (319)
364 PHA00729 NTP-binding motif con 90.4 0.56 1.2E-05 42.7 5.4 16 123-138 19-34 (226)
365 PRK13764 ATPase; Provisional 90.3 0.56 1.2E-05 49.4 6.1 45 83-146 237-281 (602)
366 PRK13850 type IV secretion sys 90.3 0.39 8.5E-06 51.4 5.0 49 122-189 140-188 (670)
367 PRK14950 DNA polymerase III su 90.2 1.6 3.4E-05 46.6 9.5 19 122-140 39-57 (585)
368 PF06745 KaiC: KaiC; InterPro 90.2 0.66 1.4E-05 42.8 6.0 53 120-189 18-70 (226)
369 KOG0331 ATP-dependent RNA heli 90.1 3.2 7E-05 42.6 11.0 92 422-516 163-272 (519)
370 TIGR03877 thermo_KaiC_1 KaiC d 90.1 0.66 1.4E-05 43.1 5.9 53 120-190 20-72 (237)
371 PRK05896 DNA polymerase III su 90.0 1.4 3E-05 46.4 8.6 19 122-140 39-57 (605)
372 PRK06995 flhF flagellar biosyn 90.0 1.2 2.7E-05 45.6 8.0 22 121-142 256-277 (484)
373 PF10412 TrwB_AAD_bind: Type I 90.0 0.41 9E-06 48.1 4.7 49 117-182 11-59 (386)
374 PF10593 Z1: Z1 domain; Inter 89.9 1.3 2.8E-05 41.1 7.5 89 448-541 110-204 (239)
375 PRK10689 transcription-repair 89.9 1.1 2.4E-05 51.5 8.4 75 423-497 648-728 (1147)
376 TIGR01241 FtsH_fam ATP-depende 89.9 1 2.2E-05 47.1 7.6 54 82-138 50-105 (495)
377 PRK09183 transposase/IS protei 89.8 0.79 1.7E-05 43.2 6.1 23 118-140 99-121 (259)
378 TIGR00635 ruvB Holliday juncti 89.7 0.78 1.7E-05 44.5 6.3 16 122-137 31-46 (305)
379 TIGR02533 type_II_gspE general 89.6 0.44 9.5E-06 49.3 4.6 30 108-137 227-258 (486)
380 COG1618 Predicted nucleotide k 89.6 0.78 1.7E-05 38.9 5.1 27 122-149 6-32 (179)
381 TIGR00767 rho transcription te 89.6 0.25 5.5E-06 48.8 2.7 19 119-137 166-184 (415)
382 PRK14955 DNA polymerase III su 89.5 2.3 5E-05 43.0 9.6 20 122-141 39-58 (397)
383 PRK07471 DNA polymerase III su 89.5 2.4 5.2E-05 42.2 9.5 26 122-148 42-67 (365)
384 PRK12726 flagellar biosynthesi 89.4 1.2 2.5E-05 44.0 7.0 22 121-142 206-227 (407)
385 PRK14959 DNA polymerase III su 89.3 0.73 1.6E-05 48.7 6.0 20 122-141 39-58 (624)
386 PRK14969 DNA polymerase III su 89.1 0.79 1.7E-05 48.0 6.1 18 123-140 40-57 (527)
387 PF01443 Viral_helicase1: Vira 89.1 0.3 6.6E-06 45.3 2.8 14 124-137 1-14 (234)
388 PRK11634 ATP-dependent RNA hel 89.1 2.5 5.3E-05 45.5 9.9 72 423-497 73-155 (629)
389 cd01394 radB RadB. The archaea 89.1 1.8 4E-05 39.5 8.0 26 120-145 18-43 (218)
390 COG0513 SrmB Superfamily II DN 89.1 2.6 5.7E-05 44.1 10.0 68 427-497 102-180 (513)
391 cd01127 TrwB Bacterial conjuga 89.0 0.52 1.1E-05 47.8 4.6 49 116-181 37-85 (410)
392 PRK14954 DNA polymerase III su 88.9 1.3 2.9E-05 47.1 7.6 20 122-141 39-58 (620)
393 PF00448 SRP54: SRP54-type pro 88.9 0.66 1.4E-05 41.6 4.7 15 124-138 4-18 (196)
394 PRK11034 clpA ATP-dependent Cl 88.9 2.3 5E-05 46.5 9.6 18 121-138 207-224 (758)
395 cd00268 DEADc DEAD-box helicas 88.8 4.6 9.9E-05 36.3 10.4 74 423-499 68-151 (203)
396 TIGR02538 type_IV_pilB type IV 88.8 0.43 9.4E-06 50.5 4.0 37 109-146 302-340 (564)
397 PRK14957 DNA polymerase III su 88.8 1.6 3.4E-05 45.8 7.9 18 123-140 40-57 (546)
398 cd01129 PulE-GspE PulE/GspE Th 88.7 0.53 1.1E-05 44.5 4.2 25 121-146 80-104 (264)
399 PRK09376 rho transcription ter 88.7 0.51 1.1E-05 46.6 4.1 31 107-137 152-185 (416)
400 CHL00176 ftsH cell division pr 88.7 2.9 6.2E-05 44.9 10.0 54 82-138 178-233 (638)
401 KOG1807 Helicases [Replication 88.6 0.71 1.5E-05 48.7 5.1 67 110-187 382-448 (1025)
402 KOG2004 Mitochondrial ATP-depe 88.6 0.83 1.8E-05 48.0 5.6 53 211-270 481-534 (906)
403 KOG0739 AAA+-type ATPase [Post 88.6 1.2 2.5E-05 41.8 6.0 83 81-190 127-214 (439)
404 PRK13900 type IV secretion sys 88.6 0.46 1E-05 46.5 3.7 19 119-137 158-176 (332)
405 PHA00547 hypothetical protein 88.3 1.6 3.5E-05 40.1 6.5 29 111-139 65-93 (337)
406 cd01128 rho_factor Transcripti 88.2 0.41 8.9E-06 44.7 3.0 19 118-136 13-31 (249)
407 PRK13822 conjugal transfer cou 88.2 0.59 1.3E-05 49.9 4.5 49 122-189 225-273 (641)
408 PRK06904 replicative DNA helic 88.1 5 0.00011 41.5 11.0 33 113-146 213-245 (472)
409 PRK09112 DNA polymerase III su 88.1 1.9 4.1E-05 42.6 7.7 24 123-147 47-70 (351)
410 cd01131 PilT Pilus retraction 88.0 0.68 1.5E-05 41.7 4.2 16 123-138 3-18 (198)
411 PRK11776 ATP-dependent RNA hel 87.9 2.7 5.9E-05 43.5 9.2 73 424-499 72-155 (460)
412 PRK07940 DNA polymerase III su 87.9 2 4.3E-05 43.2 7.8 19 122-140 37-55 (394)
413 PF13555 AAA_29: P-loop contai 87.8 0.12 2.5E-06 36.3 -0.7 18 120-137 22-39 (62)
414 COG1200 RecG RecG-like helicas 87.7 3.7 8E-05 43.3 9.6 92 402-497 293-390 (677)
415 PRK06731 flhF flagellar biosyn 87.6 5.9 0.00013 37.5 10.3 22 121-142 75-96 (270)
416 TIGR02639 ClpA ATP-dependent C 87.6 0.58 1.2E-05 51.4 4.1 16 123-138 486-501 (731)
417 COG2255 RuvB Holliday junction 87.5 1.1 2.5E-05 41.7 5.2 18 122-139 53-70 (332)
418 CHL00095 clpC Clp protease ATP 87.4 0.57 1.2E-05 52.2 4.0 30 109-138 512-556 (821)
419 PRK14948 DNA polymerase III su 87.4 2.1 4.6E-05 45.8 8.0 19 122-140 39-57 (620)
420 TIGR01425 SRP54_euk signal rec 87.0 4.3 9.4E-05 41.0 9.5 17 123-139 102-118 (429)
421 COG0630 VirB11 Type IV secreto 87.0 0.92 2E-05 44.0 4.7 40 106-146 127-167 (312)
422 COG0470 HolB ATPase involved i 86.9 2.3 5E-05 41.6 7.7 26 121-147 23-49 (325)
423 PRK13700 conjugal transfer pro 86.9 0.95 2E-05 48.3 5.0 69 93-180 157-227 (732)
424 PF05894 Podovirus_Gp16: Podov 86.8 5 0.00011 38.1 9.0 101 125-251 21-122 (333)
425 TIGR02639 ClpA ATP-dependent C 86.8 2.3 5E-05 46.8 8.2 17 122-138 204-220 (731)
426 TIGR02767 TraG-Ti Ti-type conj 86.7 0.66 1.4E-05 49.3 3.8 49 122-189 212-260 (623)
427 PF01935 DUF87: Domain of unkn 86.7 1.1 2.3E-05 41.5 4.9 41 121-177 23-63 (229)
428 TIGR03819 heli_sec_ATPase heli 86.7 1.3 2.8E-05 43.6 5.6 39 97-137 155-194 (340)
429 TIGR02012 tigrfam_recA protein 86.6 2.4 5.2E-05 41.1 7.2 44 119-179 53-96 (321)
430 PRK10867 signal recognition pa 86.5 3.6 7.8E-05 41.8 8.7 20 123-142 102-121 (433)
431 PHA00149 DNA encapsidation pro 86.4 5.1 0.00011 37.5 8.7 102 125-252 21-122 (331)
432 PRK13876 conjugal transfer cou 86.4 0.72 1.6E-05 49.4 3.9 49 122-189 145-193 (663)
433 TIGR00678 holB DNA polymerase 86.2 2.4 5.1E-05 37.7 6.7 18 122-139 15-32 (188)
434 PF04665 Pox_A32: Poxvirus A32 86.1 0.9 2E-05 41.9 3.9 23 123-146 15-37 (241)
435 KOG1806 DEAD box containing he 86.0 1.4 3E-05 48.1 5.7 72 104-190 736-807 (1320)
436 PRK09354 recA recombinase A; P 86.0 2.3 4.9E-05 41.7 6.7 44 120-180 59-102 (349)
437 COG0464 SpoVK ATPases of the A 85.9 2 4.4E-05 44.9 7.0 60 76-138 231-293 (494)
438 PF00437 T2SE: Type II/IV secr 85.9 0.53 1.1E-05 44.8 2.4 26 119-145 125-150 (270)
439 TIGR02640 gas_vesic_GvpN gas v 85.8 0.56 1.2E-05 44.3 2.6 26 114-139 14-39 (262)
440 PLN00020 ribulose bisphosphate 85.8 0.9 1.9E-05 44.4 3.8 17 122-138 149-165 (413)
441 PRK14953 DNA polymerase III su 85.7 2.2 4.8E-05 44.2 6.9 38 510-547 406-443 (486)
442 COG1855 ATPase (PilT family) [ 85.6 1.8 3.8E-05 43.1 5.7 46 84-148 244-289 (604)
443 PRK08451 DNA polymerase III su 85.5 1.9 4.1E-05 44.9 6.4 17 123-139 38-54 (535)
444 CHL00095 clpC Clp protease ATP 85.4 2.1 4.6E-05 47.8 7.1 17 122-138 201-217 (821)
445 PRK13880 conjugal transfer cou 85.4 0.65 1.4E-05 49.8 3.0 48 122-188 176-223 (636)
446 PHA00350 putative assembly pro 85.4 1.7 3.7E-05 43.3 5.7 17 124-140 4-20 (399)
447 cd01125 repA Hexameric Replica 85.3 5 0.00011 37.3 8.7 22 123-144 3-24 (239)
448 PRK11192 ATP-dependent RNA hel 85.3 5.5 0.00012 40.9 9.7 73 424-499 73-155 (434)
449 TIGR00763 lon ATP-dependent pr 85.2 0.95 2.1E-05 50.1 4.3 19 120-138 346-364 (775)
450 KOG0741 AAA+-type ATPase [Post 85.2 7.5 0.00016 39.8 9.9 49 88-136 493-553 (744)
451 KOG2028 ATPase related to the 85.2 4.1 9E-05 39.5 7.8 17 122-138 163-179 (554)
452 TIGR03600 phage_DnaB phage rep 85.2 2.4 5.3E-05 43.3 7.0 37 103-139 176-212 (421)
453 TIGR03743 SXT_TraD conjugative 85.2 3.9 8.4E-05 43.9 8.6 54 121-191 176-231 (634)
454 PRK07133 DNA polymerase III su 85.1 2 4.3E-05 46.3 6.4 19 122-140 41-59 (725)
455 KOG0744 AAA+-type ATPase [Post 84.9 0.98 2.1E-05 42.9 3.5 17 120-136 176-192 (423)
456 PRK08533 flagellar accessory p 84.8 2.4 5.2E-05 39.2 6.1 53 119-189 22-74 (230)
457 cd00984 DnaB_C DnaB helicase C 84.8 1.7 3.6E-05 40.6 5.2 40 118-173 10-49 (242)
458 TIGR00959 ffh signal recogniti 84.8 4.6 9.9E-05 41.0 8.5 20 123-142 101-120 (428)
459 PRK14971 DNA polymerase III su 84.8 3.3 7.2E-05 44.3 7.9 19 122-140 40-58 (614)
460 PRK08840 replicative DNA helic 84.7 5.7 0.00012 40.9 9.3 43 103-146 199-241 (464)
461 COG0210 UvrD Superfamily I DNA 84.7 2.9 6.3E-05 45.5 7.7 71 106-191 2-72 (655)
462 TIGR00614 recQ_fam ATP-depende 84.6 14 0.0003 38.3 12.4 76 424-499 51-135 (470)
463 PRK08939 primosomal protein Dn 84.5 2.4 5.3E-05 41.0 6.2 27 121-148 156-182 (306)
464 COG4185 Uncharacterized protei 84.4 0.44 9.6E-06 40.2 1.0 20 124-143 5-24 (187)
465 PHA00012 I assembly protein 83.8 2.7 5.8E-05 40.4 5.9 23 124-146 4-26 (361)
466 COG1222 RPT1 ATP-dependent 26S 83.8 1.3 2.8E-05 42.7 3.9 56 79-137 143-201 (406)
467 PRK14701 reverse gyrase; Provi 83.6 3.2 6.9E-05 49.5 7.7 60 423-482 121-187 (1638)
468 PRK07399 DNA polymerase III su 83.5 4.9 0.00011 39.1 7.9 26 122-148 27-52 (314)
469 TIGR02759 TraD_Ftype type IV c 83.4 1.6 3.6E-05 46.1 4.9 42 119-177 174-215 (566)
470 COG0466 Lon ATP-dependent Lon 83.4 1.7 3.6E-05 46.0 4.8 51 212-269 394-445 (782)
471 COG1074 RecB ATP-dependent exo 83.3 2.1 4.5E-05 49.5 6.1 59 120-190 15-73 (1139)
472 cd01393 recA_like RecA is a b 83.2 5.5 0.00012 36.6 7.9 26 119-144 17-42 (226)
473 PTZ00454 26S protease regulato 83.1 0.99 2.1E-05 45.4 3.0 56 80-138 138-196 (398)
474 PRK14721 flhF flagellar biosyn 83.0 2.3 4.9E-05 42.9 5.5 23 120-142 190-212 (420)
475 TIGR02655 circ_KaiC circadian 82.9 2.5 5.3E-05 44.0 5.9 54 120-190 20-73 (484)
476 TIGR02784 addA_alphas double-s 82.8 3.1 6.6E-05 48.5 7.2 56 121-190 10-65 (1141)
477 TIGR03878 thermo_KaiC_2 KaiC d 82.6 3.5 7.7E-05 38.8 6.4 27 119-145 34-60 (259)
478 TIGR03345 VI_ClpV1 type VI sec 82.6 1.3 2.9E-05 49.3 4.0 16 123-138 598-613 (852)
479 PRK06647 DNA polymerase III su 82.5 3 6.6E-05 44.0 6.5 19 122-140 39-57 (563)
480 PF05872 DUF853: Bacterial pro 82.5 0.87 1.9E-05 45.4 2.3 36 111-147 9-44 (502)
481 KOG1533 Predicted GTPase [Gene 82.5 1.5 3.3E-05 39.5 3.6 24 124-148 5-28 (290)
482 TIGR03754 conj_TOL_TraD conjug 82.5 3.3 7.1E-05 44.1 6.6 55 121-192 180-236 (643)
483 TIGR01389 recQ ATP-dependent D 82.5 18 0.00039 38.9 12.5 58 424-481 53-111 (591)
484 COG0552 FtsY Signal recognitio 82.3 14 0.0003 35.7 10.1 105 123-268 141-249 (340)
485 COG4608 AppF ABC-type oligopep 82.2 3.6 7.9E-05 38.3 6.0 32 239-270 125-156 (268)
486 TIGR03346 chaperone_ClpB ATP-d 82.2 3.9 8.5E-05 45.9 7.5 81 120-257 193-282 (852)
487 PRK00440 rfc replication facto 82.1 3.6 7.8E-05 40.1 6.6 16 123-138 40-55 (319)
488 KOG0745 Putative ATP-dependent 82.1 1.1 2.4E-05 44.2 2.8 17 122-138 227-243 (564)
489 TIGR02788 VirB11 P-type DNA tr 81.8 1.4 3.1E-05 42.8 3.5 19 119-137 142-160 (308)
490 PRK11331 5-methylcytosine-spec 81.6 1.3 2.8E-05 44.8 3.1 32 107-138 180-211 (459)
491 KOG2170 ATPase of the AAA+ sup 81.5 1.9 4.2E-05 40.6 3.9 18 124-141 113-130 (344)
492 KOG0333 U5 snRNP-like RNA heli 81.4 0.0055 1.2E-07 60.8 -13.0 215 74-289 119-382 (673)
493 PRK11034 clpA ATP-dependent Cl 81.4 1.1 2.4E-05 49.0 2.8 16 123-138 490-505 (758)
494 PRK04537 ATP-dependent RNA hel 81.3 4.6 0.0001 43.0 7.4 72 424-498 84-166 (572)
495 PRK15483 type III restriction- 81.3 4 8.7E-05 45.4 6.9 120 121-255 59-215 (986)
496 cd03115 SRP The signal recogni 81.2 11 0.00024 32.8 8.7 16 124-139 3-18 (173)
497 TIGR00150 HI0065_YjeE ATPase, 81.1 1.4 3.1E-05 36.4 2.8 17 120-136 21-37 (133)
498 KOG0347 RNA helicase [RNA proc 81.0 3.9 8.5E-05 41.8 6.1 53 426-481 265-321 (731)
499 TIGR02397 dnaX_nterm DNA polym 81.0 3.9 8.5E-05 40.6 6.5 24 122-146 37-60 (355)
500 PF12775 AAA_7: P-loop contain 81.0 0.8 1.7E-05 43.5 1.4 19 119-137 31-49 (272)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-69 Score=495.62 Aligned_cols=361 Identities=29% Similarity=0.472 Sum_probs=328.3
Q ss_pred ecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
.+...+|.+|++.+.+++++...||..|+++|.++||.++.|+|+|..|.||||||.+|+||+++.+++.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 3455679999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhh
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
+....+||++|||||+.|+.+.+++++...| +++.++.||.+.. ...|+|+|+||++|.+++.+.+.
T Consensus 127 ----p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg 199 (476)
T KOG0330|consen 127 ----PKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG 199 (476)
T ss_pred ----CCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC
Confidence 3458999999999999999999999999998 9999999998765 57899999999999999986543
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
+.+..++++|+||||++++..|...+.+|++.++
T Consensus 200 ---f~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------------------------- 233 (476)
T KOG0330|consen 200 ---FSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------------------------- 233 (476)
T ss_pred ---ccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------------------------------------------
Confidence 4478899999999999999999999999998875
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
+.+|.+++|||++...+++....+. .+..+.....+...+.
T Consensus 234 -----------------------------------~erqt~LfsATMt~kv~kL~rasl~----~p~~v~~s~ky~tv~~ 274 (476)
T KOG0330|consen 234 -----------------------------------RERQTFLFSATMTKKVRKLQRASLD----NPVKVAVSSKYQTVDH 274 (476)
T ss_pred -----------------------------------ccceEEEEEeecchhhHHHHhhccC----CCeEEeccchhcchHH
Confidence 5799999999999887776644443 4445555556666778
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
+.+.+..+....|..+++..+.+. .+..+||||++..+++.++-.|++.|+.+..+||+|++..|...++.|+ +
T Consensus 275 lkQ~ylfv~~k~K~~yLV~ll~e~-----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 275 LKQTYLFVPGKDKDTYLVYLLNEL-----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred hhhheEeccccccchhHHHHHHhh-----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 899999999999999999988874 5689999999999999999999999999999999999999999999999 6
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
...||||||+++||+|+|.|++|||||.|.+..+|+||+||+||+|+.|.+|+|++..|.+.+.+||..++.+.|
T Consensus 350 ~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 350 ARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred CCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999997765
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-66 Score=502.68 Aligned_cols=363 Identities=29% Similarity=0.428 Sum_probs=319.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
.|+++++++.+..+++..||+.|+|||.+.||.+++|+|++..|.|||||||+|+||++..+.+. .......
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~--------~~~~~~~ 163 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE--------QGKLSRG 163 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc--------cccccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999763 1122334
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
.++.+|||+|||||+.|+.+.+..+....+ ++..+++||..+. ..+.+|+|+||++|.++++... ..
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~---~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~----~~ 236 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLR---LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS----LN 236 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCC---ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC----cc
Confidence 578999999999999999999999998877 8899999998876 5689999999999999997654 45
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
++++.++|+||||+|++.+|..+++.|+..++.
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~----------------------------------------------- 269 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR----------------------------------------------- 269 (519)
T ss_pred ccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------------------------------
Confidence 889999999999999999999999999988741
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
...|.+++|||+|...+.++..++.++. ...+........+..+.+..
T Consensus 270 ------------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~--~i~ig~~~~~~a~~~i~qiv 317 (519)
T KOG0331|consen 270 ------------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPI--QINVGNKKELKANHNIRQIV 317 (519)
T ss_pred ------------------------------CcccEEEEeeeccHHHHHHHHHHhcCce--EEEecchhhhhhhcchhhhh
Confidence 3458999999999999999998888432 22222222334455666777
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEE
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVF 477 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vL 477 (548)
..+....|...+...|.... ...++++||||++++.|+.++..|+..++++..+||+.++.+|..+++.|+ |+..||
T Consensus 318 e~~~~~~K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 318 EVCDETAKLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred hhcCHHHHHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceE
Confidence 77777777777777777764 456789999999999999999999999999999999999999999999999 778999
Q ss_pred EEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 478 v~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
|||++++||+|+|+|++|||||+|.+.++|+||+||+||+|+.|.+++|++..+......+.+.++
T Consensus 396 VATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 396 VATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred EEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888888774
No 3
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-63 Score=471.79 Aligned_cols=395 Identities=29% Similarity=0.460 Sum_probs=340.4
Q ss_pred ceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCC
Q 045757 77 TFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENS 156 (548)
Q Consensus 77 ~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~ 156 (548)
.-++.+..+|++.+++..+++.+...||..|+|+|+.++|..++.+|+|..|.||||||++|++|++..+........
T Consensus 238 ~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~-- 315 (673)
T KOG0333|consen 238 GRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR-- 315 (673)
T ss_pred CCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch--
Confidence 344667788999999999999999999999999999999999999999999999999999999999998865421111
Q ss_pred CCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcCh
Q 045757 157 NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 157 ~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
......++.+++++||++|++|+.++-.+++...+ ++++.+.||.... ..+|+|+|+||++|.+.+.+
T Consensus 316 ---~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg---~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len 389 (673)
T KOG0333|consen 316 ---LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG---IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN 389 (673)
T ss_pred ---hhhcccCceeeeechHHHHHHHHHHHHHHhccccc---ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH
Confidence 12234578999999999999999999999999998 8999999997765 45899999999999999965
Q ss_pred hhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (548)
. ..-+.++.++|+||||+|++.+|...+..++..++..
T Consensus 390 r----~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPss-------------------------------------- 427 (673)
T KOG0333|consen 390 R----YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSS-------------------------------------- 427 (673)
T ss_pred H----HHHhccCceEeccchhhhhcccccHHHHHHHHhCCcc--------------------------------------
Confidence 4 3448899999999999999999999999999887621
Q ss_pred cccCCCCCCCCCccccccccccCcccchhhHHHHhhhccc---ceeEEEeeccCCCccchhhhhhhhcCCCCcccccccc
Q 045757 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS---KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL 387 (548)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (548)
....+..+...|.++++++... .|.++|+||+++....++. .|+..+.++..+..
T Consensus 428 ------------------n~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar----~ylr~pv~vtig~~ 485 (673)
T KOG0333|consen 428 ------------------NAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR----SYLRRPVVVTIGSA 485 (673)
T ss_pred ------------------ccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH----HHhhCCeEEEeccC
Confidence 1222334556677777776655 5899999999866555554 55557888889999
Q ss_pred cccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHH
Q 045757 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 467 (548)
....+.+.+.+..+..+++...|++.|.+. ...++|||+|+++.|+.+++.|.+.|+.|..+||+-++++|..++
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999999999999999999999998873 578999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch----hHHHHHHHHH
Q 045757 468 VNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR----DLVDTIRRAA 542 (548)
Q Consensus 468 ~~f~~-~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~----~~~~~i~~~~ 542 (548)
..|+. ..+|||||+++++|||||+|.+|||||+++++++|.||+||+||+|+.|.+++|+++.|- ++.+.|.++-
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~ 640 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESV 640 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhh
Confidence 99995 569999999999999999999999999999999999999999999999999999999994 4555555555
Q ss_pred HcCCCC
Q 045757 543 KLGQPV 548 (548)
Q Consensus 543 ~~~~pv 548 (548)
...+|+
T Consensus 641 ~s~~P~ 646 (673)
T KOG0333|consen 641 KSHCPP 646 (673)
T ss_pred hccCCh
Confidence 566664
No 4
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=443.39 Aligned_cols=364 Identities=27% Similarity=0.423 Sum_probs=316.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
..+|+.|||++++.+.++.+|+..|||+|..|||.|++|+|++-+|.||||||.+|.+|+++++.++
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------------- 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------------- 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-------------
Confidence 4569999999999999999999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
+.+.-+||+.||++|+-|+.+.+..+++..+ +++..+.||.+.- .+++||+|+||+++.+++.++.....
T Consensus 73 -P~giFalvlTPTrELA~QiaEQF~alGk~l~---lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~ 148 (442)
T KOG0340|consen 73 -PYGIFALVLTPTRELALQIAEQFIALGKLLN---LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCS 148 (442)
T ss_pred -CCcceEEEecchHHHHHHHHHHHHHhccccc---ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccch
Confidence 5678999999999999999999999998887 8999999997653 57899999999999999987755555
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
..+.+++++|+||||++++..|...++.+++.++
T Consensus 149 ~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP---------------------------------------------- 182 (442)
T KOG0340|consen 149 WIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP---------------------------------------------- 182 (442)
T ss_pred hhhhceeeEEecchhhhhccchhhHHhhhhccCC----------------------------------------------
Confidence 5588999999999999999999999998887765
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
..+|.++||||++...+.......... .........-......+.+
T Consensus 183 --------------------------------~~RQtLlfSATitd~i~ql~~~~i~k~--~a~~~e~~~~vstvetL~q 228 (442)
T KOG0340|consen 183 --------------------------------KPRQTLLFSATITDTIKQLFGCPITKS--IAFELEVIDGVSTVETLYQ 228 (442)
T ss_pred --------------------------------CccceEEEEeehhhHHHHhhcCCcccc--cceEEeccCCCCchhhhhh
Confidence 458999999999854443332222210 1112222222334456778
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
.++.++.+.+-..+...|..... ...+.++||+|+..+|+.++..|++..+.+..+|+.|++.+|...+.+|+ +..+
T Consensus 229 ~yI~~~~~vkdaYLv~~Lr~~~~--~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 229 GYILVSIDVKDAYLVHLLRDFEN--KENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred heeecchhhhHHHHHHHHhhhhh--ccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 88999888888888888877532 25789999999999999999999999999999999999999999999999 6669
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcC
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~ 545 (548)
||||||+++||+|||.|+.|||||.|.++.+|+||+||++|+|+.|.+++++++.|.+++.+|++..+..
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988754
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-61 Score=495.78 Aligned_cols=359 Identities=32% Similarity=0.506 Sum_probs=311.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|+++++++.+++++.++||..|+|+|.++||.++.|+|++++|+||||||++|++|+++.+... .
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~------------~- 95 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS------------V- 95 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc------------c-
Confidence 569999999999999999999999999999999999999999999999999999999999996421 0
Q ss_pred CCCCC-EEEEcCcHHHHHHHHHHHHHhhccc-CCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 164 PPRAP-SLVLCPNVVLCEQVVRMANALSADN-GEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 164 ~~~~~-~Lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..... +||++||+||+.|+.+.+..+.... + +++..++||.... ..+++|+|+||+++++++...
T Consensus 96 ~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~---~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---- 168 (513)
T COG0513 96 ERKYVSALILAPTRELAVQIAEELRKLGKNLGG---LRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---- 168 (513)
T ss_pred ccCCCceEEECCCHHHHHHHHHHHHHHHhhcCC---ccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC----
Confidence 01112 9999999999999999999999877 4 7899999998754 336999999999999999765
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
...+++++++|+||||+|++.+|...+..++..++
T Consensus 169 ~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p--------------------------------------------- 203 (513)
T COG0513 169 KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP--------------------------------------------- 203 (513)
T ss_pred CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC---------------------------------------------
Confidence 34588999999999999999999999999998875
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|.++||||++.....+...++.++. ...+...........+.
T Consensus 204 ---------------------------------~~~qtllfSAT~~~~i~~l~~~~l~~p~--~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 204 ---------------------------------PDRQTLLFSATMPDDIRELARRYLNDPV--EIEVSVEKLERTLKKIK 248 (513)
T ss_pred ---------------------------------cccEEEEEecCCCHHHHHHHHHHccCCc--EEEEccccccccccCce
Confidence 3699999999999866666666665322 22222223333566788
Q ss_pred cceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 396 EKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 396 ~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
+.++.+.... +...+...+.. ....++||||+++..++.++..|...|+.+..+||+|++++|.++++.|+ ++
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~-----~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~ 323 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKD-----EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGE 323 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 8888888765 88888777765 34557999999999999999999999999999999999999999999999 77
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHHcCCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~~~~p 547 (548)
.+||||||+++||||+|++++|||||+|.++++|+||+||+||+|..|.+++|+++. +...++.|++.++..+|
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 799999999999999999999999999999999999999999999999999999986 99999999998765543
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-61 Score=421.55 Aligned_cols=358 Identities=26% Similarity=0.410 Sum_probs=314.5
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
+...+|+++||++++++.....||++|+.+|+.|++.++.|+|++++|..|+|||.+|.+.+++.+-
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d------------- 90 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD------------- 90 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc-------------
Confidence 4556799999999999999999999999999999999999999999999999999999988887662
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
...+...+||+.||++|+.|+.+.+.+++...+ +.+.++.||.+.. ..+.+++.+||+++.++++...
T Consensus 91 -~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn---vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~-- 164 (400)
T KOG0328|consen 91 -ISVRETQALILSPTRELAVQIQKVILALGDYMN---VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-- 164 (400)
T ss_pred -cccceeeEEEecChHHHHHHHHHHHHHhccccc---ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc--
Confidence 223457899999999999999999999999888 8999999887632 3688999999999999996554
Q ss_pred ccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccC
Q 045757 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314 (548)
Q Consensus 235 ~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (548)
.....++++|+||||.|++.+|..++..+++.++
T Consensus 165 --L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp-------------------------------------------- 198 (400)
T KOG0328|consen 165 --LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP-------------------------------------------- 198 (400)
T ss_pred --ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC--------------------------------------------
Confidence 3367899999999999999999999999998775
Q ss_pred CCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc
Q 045757 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL 394 (548)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (548)
+..|++++|||+|....++.. .+..++..+-..........+
T Consensus 199 ----------------------------------~~~Qvv~~SATlp~eilemt~----kfmtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 199 ----------------------------------PGAQVVLVSATLPHEILEMTE----KFMTDPVRILVKRDELTLEGI 240 (400)
T ss_pred ----------------------------------CCceEEEEeccCcHHHHHHHH----HhcCCceeEEEecCCCchhhh
Confidence 579999999999955444433 344455555444455555668
Q ss_pred ccceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 395 KEKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 395 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
+++++.+..+. |++.+.+..... .-..++||||++..+..+.+.+.+.++.+...||+|.++||.+++++|| +
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~L-----tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg 315 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG 315 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhh-----ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC
Confidence 88888888776 999988876653 3568999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
+.+||++|++.+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.++.|+..+|.+.++.|++.+...+
T Consensus 316 ~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i 389 (400)
T KOG0328|consen 316 KSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI 389 (400)
T ss_pred CceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999987654
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-60 Score=481.43 Aligned_cols=367 Identities=24% Similarity=0.358 Sum_probs=300.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...+|++++|++.+++++.++||..|+|+|.+|||.+++|+|++++||||||||++|++|+++.+...... ..
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~-------~~ 78 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP-------ED 78 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-------cc
Confidence 34679999999999999999999999999999999999999999999999999999999999998754110 01
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
....++++|||+||++||.|+.+.+..+....+ +++..++|+.... .++++|+|+||++|.+++...
T Consensus 79 ~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---- 151 (423)
T PRK04837 79 RKVNQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---- 151 (423)
T ss_pred cccCCceEEEECCcHHHHHHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC----
Confidence 112357899999999999999999999988777 8888888887643 457899999999999888543
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
...+.+++++|+||||++++.+|...+..++..++.
T Consensus 152 ~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~-------------------------------------------- 187 (423)
T PRK04837 152 HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPP-------------------------------------------- 187 (423)
T ss_pred CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCC--------------------------------------------
Confidence 234788999999999999999999998888766541
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
....+.+++|||++..........+.. ...+...........+.
T Consensus 188 --------------------------------~~~~~~~l~SAT~~~~~~~~~~~~~~~----p~~i~v~~~~~~~~~i~ 231 (423)
T PRK04837 188 --------------------------------ANQRLNMLFSATLSYRVRELAFEHMNN----PEYVEVEPEQKTGHRIK 231 (423)
T ss_pred --------------------------------ccceeEEEEeccCCHHHHHHHHHHCCC----CEEEEEcCCCcCCCcee
Confidence 024678999999986555444333322 22221111112222334
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
+.........+...+...+.. ....++||||+++..|+.+++.|...++.+..+||+|+.++|.++++.|+ ++.
T Consensus 232 ~~~~~~~~~~k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~ 306 (423)
T PRK04837 232 EELFYPSNEEKMRLLQTLIEE-----EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDL 306 (423)
T ss_pred EEEEeCCHHHHHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCC
Confidence 444444455566555555543 34679999999999999999999999999999999999999999999999 778
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...++.|++.++..+|
T Consensus 307 ~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 307 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887765
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-61 Score=456.91 Aligned_cols=355 Identities=28% Similarity=0.445 Sum_probs=307.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
..+|.+++|+..+++++..+||..|||+|..+||..+.|+|++.||.||||||.+|+||++++++-+ ..
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYr-----------Pk 248 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYR-----------PK 248 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcC-----------cc
Confidence 4589999999999999999999999999999999999999999999999999999999999999876 22
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
.....+|||||||++|+.|+..+.++++...+ +.++...||-+.. +..|||+|+||++|.+++.+...
T Consensus 249 ~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~---I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s--- 322 (691)
T KOG0338|consen 249 KVAATRVLVLVPTRELAIQVHSVTKQLAQFTD---ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS--- 322 (691)
T ss_pred cCcceeEEEEeccHHHHHHHHHHHHHHHhhcc---ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC---
Confidence 23456999999999999999999999998887 8999999998765 57899999999999999987653
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
++++++.++|+||||+|++.+|..++..|+..++
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcp---------------------------------------------- 356 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP---------------------------------------------- 356 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhcc----------------------------------------------
Confidence 4588999999999999999999999999999886
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
..+|.++||||++...+.++...++.+ ..+..+......+.+.+
T Consensus 357 --------------------------------k~RQTmLFSATMteeVkdL~slSL~kP----vrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 357 --------------------------------KNRQTMLFSATMTEEVKDLASLSLNKP----VRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred --------------------------------ccccceeehhhhHHHHHHHHHhhcCCC----eEEEeCCccccchhhhH
Confidence 679999999999988887777666643 33333333333445555
Q ss_pred ceeeecch---hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 397 KWIEVTVD---TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 397 ~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
.++.+... .+-..+...+.. ....++|||+.+.+.|.++.-.|.-+|+.+.-+||.+++.+|.+.++.|+ +
T Consensus 401 EFiRIR~~re~dRea~l~~l~~r-----tf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~ 475 (691)
T KOG0338|consen 401 EFIRIRPKREGDREAMLASLITR-----TFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE 475 (691)
T ss_pred HHheeccccccccHHHHHHHHHH-----hcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc
Confidence 55544321 122223333333 23679999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
+++||||||+++||+||++|..||||.+|.+...|+||+||++|+|+.|.+++|+.++|++.++.|-..
T Consensus 476 eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 476 EIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred cCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 889999999999999999999999999999999999999999999999999999999999999998765
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.6e-60 Score=488.70 Aligned_cols=366 Identities=27% Similarity=0.415 Sum_probs=304.4
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
..+.+..+|+++++++.++++|+++||+.|+|+|.++||.+++|+|++++||||||||++|++|++..+....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~------- 196 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQP------- 196 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------
Confidence 3456677899999999999999999999999999999999999999999999999999999999998876431
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPK 231 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~ 231 (548)
......++.+|||+||++||.|+.+.++++....+ +++.+++|+.... ..+++|+|+||++|.+++...
T Consensus 197 --~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~---i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~ 271 (545)
T PTZ00110 197 --LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK---IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN 271 (545)
T ss_pred --cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC---ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC
Confidence 01122467899999999999999999999987765 7888888887643 457899999999999998643
Q ss_pred hhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 232 ~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
...+.++++||+||||++++.+|..++..++..++
T Consensus 272 ----~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~----------------------------------------- 306 (545)
T PTZ00110 272 ----VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR----------------------------------------- 306 (545)
T ss_pred ----CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-----------------------------------------
Confidence 24478899999999999999999999988887664
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccc-ccc
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL-HFH 390 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 390 (548)
...|++++|||++.....+...++.. ....+..... ...
T Consensus 307 -------------------------------------~~~q~l~~SAT~p~~v~~l~~~l~~~---~~v~i~vg~~~l~~ 346 (545)
T PTZ00110 307 -------------------------------------PDRQTLMWSATWPKEVQSLARDLCKE---EPVHVNVGSLDLTA 346 (545)
T ss_pred -------------------------------------CCCeEEEEEeCCCHHHHHHHHHHhcc---CCEEEEECCCcccc
Confidence 45899999999987666555554432 1111111111 122
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhh
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
...+.+.+..+....+...+.+.+.... ..+.++||||++++.|+.+++.|...++.+..+||++++++|..+++.|
T Consensus 347 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~---~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F 423 (545)
T PTZ00110 347 CHNIKQEVFVVEEHEKRGKLKMLLQRIM---RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEF 423 (545)
T ss_pred CCCeeEEEEEEechhHHHHHHHHHHHhc---ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHH
Confidence 3345555556666667777776666542 2578999999999999999999999999999999999999999999999
Q ss_pred c-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 471 ~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+ ++.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||+|+.|.+++|+++++....+.|.+.++
T Consensus 424 ~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 424 KTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred hcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 9 677999999999999999999999999999999999999999999999999999999999888888777655
No 10
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.8e-60 Score=446.40 Aligned_cols=358 Identities=28% Similarity=0.442 Sum_probs=318.4
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
...|+++.|++..+++++++||+++|++|...++.++.|+|+++.|.||||||++|++|+++.+.... ..
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~----------~~ 150 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK----------FK 150 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc----------cC
Confidence 34577889999999999999999999999999999999999999999999999999999999998762 22
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhccc-CCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADN-GEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..++..+||+|||++|+.|++.+++++.... + +.+..+.||.... ..+++|+|+||++|.+++.+...
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~---~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-- 225 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHES---ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-- 225 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCC---cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--
Confidence 3357789999999999999999999999876 4 7889999998765 34899999999999999987654
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
....+++++|+||||++++.+|...+++|++.++
T Consensus 226 -f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp--------------------------------------------- 259 (543)
T KOG0342|consen 226 -FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP--------------------------------------------- 259 (543)
T ss_pred -chhhccceeEeecchhhhhcccHHHHHHHHHhcc---------------------------------------------
Confidence 3466789999999999999999999999998775
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
..+|.++||||.+...+..+...++. .+................+.
T Consensus 260 ---------------------------------k~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~ 305 (543)
T KOG0342|consen 260 ---------------------------------KQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHERLE 305 (543)
T ss_pred ---------------------------------ccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcchhhccc
Confidence 56999999999999888888877776 33333333444445556788
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
+.++....+.++..+..++++.+ ...++||||+|...+..+++.|+...++|..+||+.++..|..+...|+ .+.
T Consensus 306 Qgyvv~~~~~~f~ll~~~LKk~~----~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 306 QGYVVAPSDSRFSLLYTFLKKNI----KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred ceEEeccccchHHHHHHHHHHhc----CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc
Confidence 88888888888889999998864 3389999999999999999999999999999999999999999999999 778
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
.||||||+++||+|+|+|+.||+||+|.++.+|+||+||+||.|..|.++++..+.+...++.|+
T Consensus 382 gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 382 GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-59 Score=439.05 Aligned_cols=359 Identities=29% Similarity=0.452 Sum_probs=307.8
Q ss_pred CCcccccC--CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 83 NVTWKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 83 ~~~~~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
..+|++++ |+++++.++..+||+..||+|..+||.++.++|+++.|+||||||++|++|+++.+..+...
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~-------- 74 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK-------- 74 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC--------
Confidence 35688886 55999999999999999999999999999999999999999999999999999999766211
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcChhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
..+....+|||+||+||+.|+.+.+..+.... +.+.+.++.||.... .++++|+|+||++|.+++..+..
T Consensus 75 -~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l--~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~ 151 (567)
T KOG0345|consen 75 -TPPGQVGALIISPTRELARQIREVAQPFLEHL--PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE 151 (567)
T ss_pred -CCccceeEEEecCcHHHHHHHHHHHHHHHHhh--hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh
Confidence 11113589999999999999999999998773 337888999996644 57899999999999999976543
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
. ..+.++.++|+||||++++.+|...+..|+..++
T Consensus 152 ~--l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------------------------- 186 (567)
T KOG0345|consen 152 K--LSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------------------------- 186 (567)
T ss_pred h--ccccccceEEecchHhHhcccHHHHHHHHHHhcc-------------------------------------------
Confidence 2 2356899999999999999999999999999886
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
..++.-+||||.......+....+.+..... +...........
T Consensus 187 -----------------------------------KQRRTGLFSATq~~~v~dL~raGLRNpv~V~--V~~k~~~~tPS~ 229 (567)
T KOG0345|consen 187 -----------------------------------KQRRTGLFSATQTQEVEDLARAGLRNPVRVS--VKEKSKSATPSS 229 (567)
T ss_pred -----------------------------------cccccccccchhhHHHHHHHHhhccCceeee--ecccccccCchh
Confidence 5678899999999877777766666533222 222222235556
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhc
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+..++..+....|...++++|.+ ...+++|||++|-..++.....|... +..+..+||.|....|..++..|+
T Consensus 230 L~~~Y~v~~a~eK~~~lv~~L~~-----~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 230 LALEYLVCEADEKLSQLVHLLNN-----NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred hcceeeEecHHHHHHHHHHHHhc-----cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 78888999999999999999987 46789999999999999999999876 578899999999999999999999
Q ss_pred c-CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 472 E-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 472 ~-~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
. ...+|+|||+++||||||++++||++|+|.++..|+||+||+||.|+.|.+++|+.+++..+++.++
T Consensus 305 ~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 305 KLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred hccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHH
Confidence 5 6699999999999999999999999999999999999999999999999999999998888877664
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.5e-59 Score=474.47 Aligned_cols=361 Identities=27% Similarity=0.407 Sum_probs=296.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
+|++++|++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+...... ....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--------~~~~ 73 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--------AKGR 73 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--------cccC
Confidence 69999999999999999999999999999999999999999999999999999999999998653110 0111
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
...++|||+||++|+.|+.+.++.+....+ +++..++|+.... .++++|+|+||++|.+++.... ..
T Consensus 74 ~~~~aLil~PtreLa~Qi~~~~~~~~~~~~---~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~----~~ 146 (456)
T PRK10590 74 RPVRALILTPTRELAAQIGENVRDYSKYLN---IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA----VK 146 (456)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCC---CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC----cc
Confidence 235799999999999999999999987766 7888889987654 4579999999999988875432 34
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
++++++||+||||++++++|...+..++..++
T Consensus 147 l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------------------------------ 178 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------------------------------ 178 (456)
T ss_pred cccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------------------------------
Confidence 78899999999999999999888888876653
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
...|.+++|||++.....+...++.+ ...+...........+.+.+
T Consensus 179 ------------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~----~~~i~~~~~~~~~~~i~~~~ 224 (456)
T PRK10590 179 ------------------------------AKRQNLLFSATFSDDIKALAEKLLHN----PLEIEVARRNTASEQVTQHV 224 (456)
T ss_pred ------------------------------ccCeEEEEeCCCcHHHHHHHHHHcCC----CeEEEEecccccccceeEEE
Confidence 45799999999986555544444332 22121111112223344444
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEE
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVF 477 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vL 477 (548)
..+....+...+...+.. ....++||||+++..++.+++.|.+.++.+..+||+|+..+|.++++.|+ ++.+||
T Consensus 225 ~~~~~~~k~~~l~~l~~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iL 299 (456)
T PRK10590 225 HFVDKKRKRELLSQMIGK-----GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 (456)
T ss_pred EEcCHHHHHHHHHHHHHc-----CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEE
Confidence 444444444333333322 35679999999999999999999999999999999999999999999999 677999
Q ss_pred EEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 478 v~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
|||+++++|||+|++++||+|++|.+..+|+||+||+||.|..|.+++|+..+|...++.|++.++.++|
T Consensus 300 VaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998887765
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-60 Score=422.33 Aligned_cols=356 Identities=27% Similarity=0.444 Sum_probs=312.3
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
....|+++.|..+++..+.++||+.|+|+|.++||.++.|+|++..|..|+|||-+|++|+++++-
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid-------------- 148 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID-------------- 148 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC--------------
Confidence 455799999999999999999999999999999999999999999999999999999999999983
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+......++|++||++|+.|+.+.++.+.+..+ +++...+||.... .+..+++|+||++++++.+..
T Consensus 149 ~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~---i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg---- 221 (459)
T KOG0326|consen 149 PKKNVIQAIILVPTRELALQTSQVCKELSKHLG---IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG---- 221 (459)
T ss_pred ccccceeEEEEeecchhhHHHHHHHHHHhcccC---eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc----
Confidence 233567899999999999999999999999998 9999999998765 467899999999999998654
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
...++++.++|+||||.+++..|+..++.++..++
T Consensus 222 Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP--------------------------------------------- 256 (459)
T KOG0326|consen 222 VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP--------------------------------------------- 256 (459)
T ss_pred cccchhceEEEechhhhhhchhhhhHHHHHHHhCC---------------------------------------------
Confidence 34488999999999999999999999999998876
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
..+|++++|||+|...+.++..+++.++..-... ......+.
T Consensus 257 ---------------------------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-----eLtl~Gvt 298 (459)
T KOG0326|consen 257 ---------------------------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME-----ELTLKGVT 298 (459)
T ss_pred ---------------------------------ccceeeEEecccchhHHHHHHHhccCcceeehhh-----hhhhcchh
Confidence 6799999999999988888888877644221111 12223466
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
+++..+....|+--+-..+.+ + .-...|||||+...++.+|+.+.+.|+.|+++|+.|-++.|.+++.+|+ |.+
T Consensus 299 QyYafV~e~qKvhCLntLfsk-L----qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~c 373 (459)
T KOG0326|consen 299 QYYAFVEERQKVHCLNTLFSK-L----QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKC 373 (459)
T ss_pred hheeeechhhhhhhHHHHHHH-h----cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcccc
Confidence 777777665554443333333 2 3568999999999999999999999999999999999999999999999 788
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
+.|||||.+.||||++++++|||||+|+++++|+||+||.||.|..|.+|.+++.+|+.-+.+||+.++.+|
T Consensus 374 rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI 445 (459)
T KOG0326|consen 374 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEI 445 (459)
T ss_pred ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999776
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-58 Score=479.62 Aligned_cols=366 Identities=28% Similarity=0.380 Sum_probs=300.4
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|++++|++.++++|.++||..|+|+|.++||.+++|+|++++||||||||++|++|+++.+...... ....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~-------~~~~ 81 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL-------ADRK 81 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-------cccc
Confidence 469999999999999999999999999999999999999999999999999999999999998653100 0011
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
....++|||+||++|+.|+++.+..+....+ +++..++|+.... .++++|+|+||++|.+++.... ..
T Consensus 82 ~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~---i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~---~~ 155 (572)
T PRK04537 82 PEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK---VV 155 (572)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc---cc
Confidence 1247899999999999999999999988776 8899999987653 4578999999999998885432 23
Q ss_pred cccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.+..+++|||||||++++.+|...+..++..++.
T Consensus 156 ~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~---------------------------------------------- 189 (572)
T PRK04537 156 SLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE---------------------------------------------- 189 (572)
T ss_pred chhheeeeEecCHHHHhhcchHHHHHHHHHhccc----------------------------------------------
Confidence 4678999999999999999999999888876641
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
....|++++|||++..........+.. ...+...........+.+.
T Consensus 190 ------------------------------~~~~q~ll~SATl~~~v~~l~~~~l~~----p~~i~v~~~~~~~~~i~q~ 235 (572)
T PRK04537 190 ------------------------------RGTRQTLLFSATLSHRVLELAYEHMNE----PEKLVVETETITAARVRQR 235 (572)
T ss_pred ------------------------------ccCceEEEEeCCccHHHHHHHHHHhcC----CcEEEeccccccccceeEE
Confidence 024799999999986554444443332 1111111111122334444
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
+.......+...+...+.. ..+.++||||++++.++.+++.|.+.++.+..+||+|+..+|.++++.|+ ++.+|
T Consensus 236 ~~~~~~~~k~~~L~~ll~~-----~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~V 310 (572)
T PRK04537 236 IYFPADEEKQTLLLGLLSR-----SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEI 310 (572)
T ss_pred EEecCHHHHHHHHHHHHhc-----ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 5555555566665555543 45779999999999999999999999999999999999999999999999 67799
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|+.+.+...+..|++.++..+|
T Consensus 311 LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 311 LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877664
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.1e-58 Score=473.80 Aligned_cols=366 Identities=26% Similarity=0.415 Sum_probs=299.5
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
..+++..+|+++++++.+++.|.+.||..|+|+|.++||.++.|+|++++||||||||++|++|++..+.....
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~------ 188 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRS------ 188 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcc------
Confidence 34567788999999999999999999999999999999999999999999999999999999999998864310
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPK 231 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~ 231 (548)
.......++.+|||+||++|+.|+.+.++.+....+ +++..+.||.... ..+++|+|+||++|.+++...
T Consensus 189 -~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~---~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~ 264 (518)
T PLN00206 189 -GHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP---FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH 264 (518)
T ss_pred -ccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 001112467999999999999999999999887665 7788888876543 467899999999999988644
Q ss_pred hhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 232 ~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
...++++++||+||||+|++++|...+..++..++
T Consensus 265 ----~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~----------------------------------------- 299 (518)
T PLN00206 265 ----DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS----------------------------------------- 299 (518)
T ss_pred ----CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-----------------------------------------
Confidence 24478999999999999999999998888876542
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN 391 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 391 (548)
..|++++|||++.....+...++.. ...+.........
T Consensus 300 --------------------------------------~~q~l~~SATl~~~v~~l~~~~~~~----~~~i~~~~~~~~~ 337 (518)
T PLN00206 300 --------------------------------------QPQVLLFSATVSPEVEKFASSLAKD----IILISIGNPNRPN 337 (518)
T ss_pred --------------------------------------CCcEEEEEeeCCHHHHHHHHHhCCC----CEEEEeCCCCCCC
Confidence 4799999999987655554444332 2222222222223
Q ss_pred cccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHhh
Q 045757 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT-AGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
..+.+....+....+...+.+.+.... ....++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|
T Consensus 338 ~~v~q~~~~~~~~~k~~~l~~~l~~~~---~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 338 KAVKQLAIWVETKQKKQKLFDILKSKQ---HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred cceeEEEEeccchhHHHHHHHHHHhhc---ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 334455555555566666666665431 2346899999999999999999975 589999999999999999999999
Q ss_pred c-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 471 ~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+ ++.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.++
T Consensus 415 r~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 415 LVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred HCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 9 777999999999999999999999999999999999999999999999999999999999888888776665
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.2e-58 Score=478.22 Aligned_cols=359 Identities=27% Similarity=0.424 Sum_probs=303.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...+|++++|++.++++|.++||+.|+|+|.++|+.++.|+|++++||||||||++|++|+++.+...
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------------ 71 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------------ 71 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------------
Confidence 44569999999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
...+.+|||+||++|+.|+.+.++.+..... .+.+..++|+..+. ..+++|+|+||+++.+++...
T Consensus 72 --~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~--~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---- 143 (629)
T PRK11634 72 --LKAPQILVLAPTRELAVQVAEAMTDFSKHMR--GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---- 143 (629)
T ss_pred --cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC----
Confidence 1356899999999999999999998876541 27888888987653 357999999999999988543
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
...++++++||+||||.+++.+|...+..++..++
T Consensus 144 ~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp--------------------------------------------- 178 (629)
T PRK11634 144 TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP--------------------------------------------- 178 (629)
T ss_pred CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC---------------------------------------------
Confidence 23478899999999999999999999988887664
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|.++||||++.....+...++.+ ...+.........+.+.
T Consensus 179 ---------------------------------~~~q~llfSAT~p~~i~~i~~~~l~~----~~~i~i~~~~~~~~~i~ 221 (629)
T PRK11634 179 ---------------------------------EGHQTALFSATMPEAIRRITRRFMKE----PQEVRIQSSVTTRPDIS 221 (629)
T ss_pred ---------------------------------CCCeEEEEEccCChhHHHHHHHHcCC----CeEEEccCccccCCceE
Confidence 45899999999987665555444432 22222222222334455
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
+.++.+....+...+...+.. ....++||||+++..++.+++.|.+.++.+..+||+|++.+|.+++++|+ ++.
T Consensus 222 q~~~~v~~~~k~~~L~~~L~~-----~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~ 296 (629)
T PRK11634 222 QSYWTVWGMRKNEALVRFLEA-----EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 (629)
T ss_pred EEEEEechhhHHHHHHHHHHh-----cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCC
Confidence 566666666677777776654 34578999999999999999999999999999999999999999999999 777
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
+|||||+++++|||+|++++||+||+|.+...|+||+||+||+|+.|.+++|+.+.+...++.|++.++..++
T Consensus 297 ~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~ 369 (629)
T PRK11634 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369 (629)
T ss_pred CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998776653
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.2e-58 Score=471.84 Aligned_cols=356 Identities=28% Similarity=0.417 Sum_probs=301.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
..+|+++++++.+++++.++||+.|+|+|.+|++.+++|+|++++||||||||++|++|+++.+...
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------- 69 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------- 69 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------
Confidence 3579999999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
.....+||++||++|+.|+.+.++.+..... .+++..++|+.... ..+++|+|+||+++.+++... .
T Consensus 70 -~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~----~ 142 (460)
T PRK11776 70 -RFRVQALVLCPTRELADQVAKEIRRLARFIP--NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG----T 142 (460)
T ss_pred -cCCceEEEEeCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC----C
Confidence 1245799999999999999999998876431 27888899987653 467999999999999988643 2
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
..+.++++||+||||++++.+|...+..++..++
T Consensus 143 ~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~---------------------------------------------- 176 (460)
T PRK11776 143 LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP---------------------------------------------- 176 (460)
T ss_pred ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC----------------------------------------------
Confidence 3478899999999999999999999988887664
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
...|++++|||++.....+...++.. ...+...... ....+.+
T Consensus 177 --------------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~----~~~i~~~~~~-~~~~i~~ 219 (460)
T PRK11776 177 --------------------------------ARRQTLLFSATYPEGIAAISQRFQRD----PVEVKVESTH-DLPAIEQ 219 (460)
T ss_pred --------------------------------cccEEEEEEecCcHHHHHHHHHhcCC----CEEEEECcCC-CCCCeeE
Confidence 45899999999986655555544432 2222111111 1233556
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
.++.+....+...+...+.. ..+.++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|+ ++.+
T Consensus 220 ~~~~~~~~~k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~ 294 (460)
T PRK11776 220 RFYEVSPDERLPALQRLLLH-----HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS 294 (460)
T ss_pred EEEEeCcHHHHHHHHHHHHh-----cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 66677776777777776654 35678999999999999999999999999999999999999999999999 6779
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+++.|...++.+++.++..+
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~ 365 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKL 365 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998876543
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-58 Score=439.28 Aligned_cols=359 Identities=27% Similarity=0.413 Sum_probs=320.8
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
.....|++|+++...++.|++.+|..++.+|+.+||..++|+|++-+|.|||||||+|++|+++.++.. +
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~----------k 135 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL----------K 135 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc----------C
Confidence 345579999999999999999999999999999999999999999999999999999999999999887 3
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+....|.-+|||.|||+|+.|+++.+++.++..+ +.++.+.||.+.. ....+|+||||++|++++.....
T Consensus 136 Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~---fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~-- 210 (758)
T KOG0343|consen 136 WSPTDGLGALIISPTRELALQTFEVLNKVGKHHD---FSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN-- 210 (758)
T ss_pred CCCCCCceeEEecchHHHHHHHHHHHHHHhhccc---cccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--
Confidence 5555678899999999999999999999999887 9999999998765 46899999999999999976543
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
....++.++|+||||++++.+|...+..|++.++
T Consensus 211 -f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP--------------------------------------------- 244 (758)
T KOG0343|consen 211 -FSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP--------------------------------------------- 244 (758)
T ss_pred -CCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC---------------------------------------------
Confidence 3467899999999999999999999999998876
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
..+|.++||||.+.....++...+++ +...++...........+.
T Consensus 245 ---------------------------------~~RQTLLFSATqt~svkdLaRLsL~d--P~~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 245 ---------------------------------KKRQTLLFSATQTKSVKDLARLSLKD--PVYVSVHENAVAATPSNLQ 289 (758)
T ss_pred ---------------------------------hhheeeeeecccchhHHHHHHhhcCC--CcEEEEeccccccChhhhh
Confidence 57999999999998888777766665 4444555555556667789
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
++++.+....+++.|+.++..+ ...+.|||+.|.+++..+++.|.++ |+.+.++||.|++..|.++.+.|- .
T Consensus 290 Q~y~~v~l~~Ki~~L~sFI~sh-----lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 290 QSYVIVPLEDKIDMLWSFIKSH-----LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred heEEEEehhhHHHHHHHHHHhc-----cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 9999999999999999999985 4679999999999999999999987 788999999999999999999998 6
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch-hHHHHHHH
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR-DLVDTIRR 540 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~-~~~~~i~~ 540 (548)
...||+||++++||+|+|.|++||++|.|.+..+|+||+||++|.+..|.+++++++.+. ..+..|+.
T Consensus 365 ~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 365 RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 779999999999999999999999999999999999999999999999999999999984 44444443
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.5e-57 Score=461.48 Aligned_cols=359 Identities=29% Similarity=0.458 Sum_probs=291.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
+|+++++++.+++.+.++||..|+++|.++++.+++|+|++++||||+|||++|++|+++.+.... ....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~----------~~~~ 71 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP----------RRKS 71 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----------ccCC
Confidence 599999999999999999999999999999999999999999999999999999999999886431 0112
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
...++||++||++|+.|+.+.+..+....+ +++..++|+.... .++++|+|+||++|.+++.... ..
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~----~~ 144 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTH---LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN----FD 144 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCC---cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC----cC
Confidence 346899999999999999999999988777 7899999987643 3578999999999998886442 34
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
+.++++||+||||++++.+|...+..+...++
T Consensus 145 ~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------------------------------ 176 (434)
T PRK11192 145 CRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------------------------------ 176 (434)
T ss_pred cccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------------------------------
Confidence 67899999999999999999988888765443
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
...|.+++|||++.. ....+..........+...........+.+.+
T Consensus 177 ------------------------------~~~q~~~~SAT~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 177 ------------------------------WRKQTLLFSATLEGD---AVQDFAERLLNDPVEVEAEPSRRERKKIHQWY 223 (434)
T ss_pred ------------------------------cccEEEEEEeecCHH---HHHHHHHHHccCCEEEEecCCcccccCceEEE
Confidence 357899999999732 11222222222222222222222222333444
Q ss_pred eeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 399 IEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 399 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
..... ..+...+...+.. ....++||||+++..++.+++.|.+.++.+..+||+|+..+|..+++.|+ ++.+|
T Consensus 224 ~~~~~~~~k~~~l~~l~~~-----~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~v 298 (434)
T PRK11192 224 YRADDLEHKTALLCHLLKQ-----PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNV 298 (434)
T ss_pred EEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcE
Confidence 44433 2333333333322 35689999999999999999999999999999999999999999999999 67799
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
||||+++++|||+|++++||+||+|.+...|+||+||+||.|..|.+++|++..|...+.++++.+...+
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998776554
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-56 Score=458.55 Aligned_cols=367 Identities=27% Similarity=0.364 Sum_probs=299.2
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
+....|.+++|++.+.++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+.+.... .
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~-------~ 156 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP-------K 156 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-------c
Confidence 445679999999999999999999999999999999999999999999999999999999999998764110 1
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcChhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
.......++|||+||++|+.|+.+.++.+....+ +.+..++|+.+.. ...++|+|+||++|.+++...
T Consensus 157 ~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~---~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-- 231 (475)
T PRK01297 157 ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-- 231 (475)
T ss_pred ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCC---CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--
Confidence 1111257899999999999999999999987776 7888888886543 457899999999998876432
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
..+++++++||+||+|++++.+|...+..++..++.
T Consensus 232 --~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------------------------------ 267 (475)
T PRK01297 232 --EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR------------------------------------------ 267 (475)
T ss_pred --CcccccCceEEechHHHHHhcccHHHHHHHHHhCCC------------------------------------------
Confidence 345889999999999999999998888888765531
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
....|++++|||++.+.......++.. ...+...........
T Consensus 268 ----------------------------------~~~~q~i~~SAT~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~ 309 (475)
T PRK01297 268 ----------------------------------KEERQTLLFSATFTDDVMNLAKQWTTD----PAIVEIEPENVASDT 309 (475)
T ss_pred ----------------------------------CCCceEEEEEeecCHHHHHHHHHhccC----CEEEEeccCcCCCCc
Confidence 124699999999986555444433322 111111111122233
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
+.+.+..+....+...+...+.. ....++||||+++..++.+++.|.+.++.+..+||+++.++|.++++.|+ +
T Consensus 310 ~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G 384 (475)
T PRK01297 310 VEQHVYAVAGSDKYKLLYNLVTQ-----NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG 384 (475)
T ss_pred ccEEEEEecchhHHHHHHHHHHh-----cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC
Confidence 44445555555555555555543 34579999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
+.+|||||+++++|||+|++++||++++|.|..+|+||+||+||.|+.|.+++|++++|...+..+++.++..+
T Consensus 385 ~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 385 KIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 77999999999999999999999999999999999999999999999999999999999999999999887664
No 21
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-58 Score=434.44 Aligned_cols=379 Identities=26% Similarity=0.407 Sum_probs=305.8
Q ss_pred CCcccccCCCHHHHHHHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...|.+|||++.+...|+ .++|..||.+|.++||.+++|+|++|.++||||||++|++|+++.+... ..+.
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m--------~~ki 206 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAM--------EPKI 206 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhc--------Cccc
Confidence 456999999999999995 5699999999999999999999999999999999999999999999754 1223
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
.+..|..+||++||||||.|+++.++++..... .+--+.+.||.+.. +++++|+|+||++|.+++.+.+.
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h--WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-- 282 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFH--WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-- 282 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCce--EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--
Confidence 345688999999999999999999999987643 24445677776654 57899999999999999987653
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
+.+++++||||||+|++++-||...+..|++.+-......
T Consensus 283 -i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e--------------------------------------- 322 (708)
T KOG0348|consen 283 -IKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE--------------------------------------- 322 (708)
T ss_pred -heeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh---------------------------------------
Confidence 3477899999999999999999999999997763110000
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCC----------------
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA---------------- 379 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~---------------- 379 (548)
.-...++...|.+++|||++.....++...++++....
T Consensus 323 --------------------------~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ 376 (708)
T KOG0348|consen 323 --------------------------CKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQ 376 (708)
T ss_pred --------------------------cccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhh
Confidence 00011223578899999998766666655555432111
Q ss_pred ccccc---ccc--cccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------
Q 045757 380 DWISG---NYL--HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------- 447 (548)
Q Consensus 380 ~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------- 447 (548)
+.... +.+ ......+.+.+..+...-++..|...|.+..... ...++|||+.+.+.++.=++.|...
T Consensus 377 ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~-~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 377 EVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFE-EKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhh-hhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 00000 011 2334456777888888888888888888776543 3459999999999999988888653
Q ss_pred ---------------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHh
Q 045757 448 ---------------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511 (548)
Q Consensus 448 ---------------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~ 511 (548)
+..++.+||+|++++|..+++.|. ....||+|||+++||+|+|+|+.||+||+|.+..+|+||+
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRv 535 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRV 535 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHh
Confidence 345789999999999999999999 5668999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeecCchhHHHHHHH
Q 045757 512 GRTARAGQYGLVTSLYTESNRDLVDTIRR 540 (548)
Q Consensus 512 GR~gR~g~~G~~i~~~~~~~~~~~~~i~~ 540 (548)
||++|+|..|.+++|..+.+.++++.++.
T Consensus 536 GRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 536 GRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred hhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 99999999999999999999999988875
No 22
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=438.93 Aligned_cols=377 Identities=29% Similarity=0.419 Sum_probs=296.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...|..|+|+..++++|..+||..|+++|...+|.+..| .|++-.|.|||||||+|-+||++.+.+...+... -.+-.
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e-~~~~~ 258 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE-LSNTS 258 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh-hhhHH
Confidence 345999999999999999999999999999999999999 7999999999999999999999977654322211 11112
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..+..+.+||++|||+|+.|+.+.+.+.+...+ +++..++||-... .+.++|||+||++|+.++..... .
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~---i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~-~ 334 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ---IRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT-H 334 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccC---eEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh-h
Confidence 223344699999999999999999999998877 9999999996643 46899999999999999876543 3
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
...+.+++++|+||+|+|++.++...+..+++++..
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e-------------------------------------------- 370 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE-------------------------------------------- 370 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh--------------------------------------------
Confidence 456889999999999999999999999999988751
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhh-------------hc------C
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK-------------QM------F 376 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~-------------~~------~ 376 (548)
....+.+|.+.||||++.....-.....+ .+ .
T Consensus 371 -----------------------------~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 371 -----------------------------EQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred -----------------------------hhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence 11235679999999997533221111111 10 0
Q ss_pred CCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecC
Q 045757 377 PDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456 (548)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~ 456 (548)
.....+...........+....+.|....+-.++.-+|. ..++++|||||+++.+.+++-+|+..++....+|+
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~------ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT------RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe------ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 111111111111111222222233322222222222222 36899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHH
Q 045757 457 DLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535 (548)
Q Consensus 457 ~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~ 535 (548)
.|.+.+|...++.|+ ....||||||+++||+|||+|+|||||..|.+.+.|+||.||++|++..|..+.||.+.++..+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 999999999999999 5669999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045757 536 DTIRRAAK 543 (548)
Q Consensus 536 ~~i~~~~~ 543 (548)
.+|.+-++
T Consensus 576 ~KL~ktL~ 583 (731)
T KOG0347|consen 576 KKLCKTLK 583 (731)
T ss_pred HHHHHHHh
Confidence 99988776
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-56 Score=430.85 Aligned_cols=376 Identities=27% Similarity=0.418 Sum_probs=319.9
Q ss_pred ecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
+....+|++-.+.+.+..+++..|+..|+|+|+.+||.+..|+++++||+||+|||.+|++|++..++.... ....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~----~~~~ 145 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP----EDRG 145 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc----ccCc
Confidence 344447888889999999999999999999999999999999999999999999999999999999987621 1111
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhh
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
.......+.+||++||++|+.|++++.+++....+ ++.+..+|+.+.. ..+|||+|+||++|.++++..+
T Consensus 146 ~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~---~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~- 221 (482)
T KOG0335|consen 146 ESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG---MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK- 221 (482)
T ss_pred ccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc---ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-
Confidence 12222468999999999999999999999987776 8889999986543 5789999999999999997654
Q ss_pred hccccccCeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (548)
..+++++++|+||||+|++ .+|...+..++.......
T Consensus 222 ---i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~--------------------------------------- 259 (482)
T KOG0335|consen 222 ---ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP--------------------------------------- 259 (482)
T ss_pred ---eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---------------------------------------
Confidence 4588999999999999999 899999999987653110
Q ss_pred cCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCc
Q 045757 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP 392 (548)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 392 (548)
...+|.++||||++......+...+.+. ...+..........
T Consensus 260 -----------------------------------~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ 301 (482)
T KOG0335|consen 260 -----------------------------------KNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSE 301 (482)
T ss_pred -----------------------------------ccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccc
Confidence 1468999999999988777666666542 33444455556667
Q ss_pred ccccceeeecchhhHHHHHHHHHHHhhc----cCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 393 RLKEKWIEVTVDTQVDALIEAVKERLEF----GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
++.+.+..+....+...+++.+...... .....+++|||.+++.+..++.+|...++.+..+||+.++.+|.+.++
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 7888889999999999999988865421 123348999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
.|+ ++..+||||++++||+|+|+|+|||+||+|.+..+|+||+||+||.|+.|.+++|++..+....+.|-+.+.
T Consensus 382 ~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 382 DFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred HhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 999 777999999999999999999999999999999999999999999999999999999988887777776654
No 24
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-55 Score=402.78 Aligned_cols=373 Identities=23% Similarity=0.373 Sum_probs=306.8
Q ss_pred cCCCCCCceeecCCCcccc-cCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 70 DKNGSSDTFFADDNVTWKS-LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
+..++.....+.+.++|++ ++-.+++++.+++.||.+|+|+|.+|||.+++|+|++.+|.||+|||++|++|.+..+..
T Consensus 205 d~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~a 284 (629)
T KOG0336|consen 205 DLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDA 284 (629)
T ss_pred ccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeec
Confidence 3344556678888888986 467899999999999999999999999999999999999999999999999998776643
Q ss_pred HcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChH
Q 045757 149 ALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPA 222 (548)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~ 222 (548)
... +.....++.+|++.||++|+.|+.-++.+..-. | .+..+++|+.+.. +.+.+|+++||+
T Consensus 285 qp~--------~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g---~ksvc~ygggnR~eqie~lkrgveiiiatPg 352 (629)
T KOG0336|consen 285 QPK--------RREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-G---LKSVCVYGGGNRNEQIEDLKRGVEIIIATPG 352 (629)
T ss_pred cch--------hhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-C---cceEEEecCCCchhHHHHHhcCceEEeeCCc
Confidence 211 111345789999999999999998887766533 3 7888888887765 578999999999
Q ss_pred HHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchh
Q 045757 223 ALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQD 302 (548)
Q Consensus 223 ~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (548)
+|.++.... ..++..+.++|+||||+|++.+|..++.+++-.++
T Consensus 353 rlndL~~~n----~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR-------------------------------- 396 (629)
T KOG0336|consen 353 RLNDLQMDN----VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR-------------------------------- 396 (629)
T ss_pred hHhhhhhcC----eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC--------------------------------
Confidence 999988554 45688999999999999999999999999987766
Q ss_pred hhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccc
Q 045757 303 EENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWI 382 (548)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~ 382 (548)
+++|.++.|||+|...+.++..++++.. ...+
T Consensus 397 ----------------------------------------------PDRqtvmTSATWP~~VrrLa~sY~Kep~--~v~v 428 (629)
T KOG0336|consen 397 ----------------------------------------------PDRQTVMTSATWPEGVRRLAQSYLKEPM--IVYV 428 (629)
T ss_pred ----------------------------------------------CcceeeeecccCchHHHHHHHHhhhCce--EEEe
Confidence 5699999999999888888888877532 1111
Q ss_pred ccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHH
Q 045757 383 SGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEE 462 (548)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 462 (548)
+.........+++.++......+...+..++... ....++||||..+..+..|...|.-.|+....+||+-.+.+
T Consensus 429 -GsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m----s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~D 503 (629)
T KOG0336|consen 429 -GSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM----SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSD 503 (629)
T ss_pred -cccceeeeeeeeeeEEecccHHHHHHHHHHHHhc----CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhh
Confidence 1112222334555554444445554444444442 56789999999999999999999989999999999999999
Q ss_pred HHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 463 RAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 463 r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
|+..++.|+ ++.+|||+|+.+++|+|+|+++||+|||+|.+++.|+||+||+||+|+.|.+++|++.+|......|-+.
T Consensus 504 rE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 504 REMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred HHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 999999999 7779999999999999999999999999999999999999999999999999999999998777666655
Q ss_pred HH
Q 045757 542 AK 543 (548)
Q Consensus 542 ~~ 543 (548)
++
T Consensus 584 Le 585 (629)
T KOG0336|consen 584 LE 585 (629)
T ss_pred HH
Confidence 54
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-55 Score=405.44 Aligned_cols=363 Identities=27% Similarity=0.452 Sum_probs=304.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|+++||++.|++++.+.||+.||.+|..+||.+++|+|++..|.||||||.+|++|+++.+++..... ..
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--------~~ 90 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--------DG 90 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--------cc
Confidence 6899999999999999999999999999999999999999999999999999999999999999874332 12
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCC------ccCCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG------WPIGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
..++.++|++||+|||+|++.++.++....+. .+++..++++.. +..+.|+|+|+||+++..++..... .
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k-~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~---~ 166 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSK-DLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL---E 166 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc---h
Confidence 34678999999999999999999887655431 266666665433 2357899999999999999875542 4
Q ss_pred cccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.+..++++|+||||.++.-||...+..+...++
T Consensus 167 ~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP----------------------------------------------- 199 (569)
T KOG0346|consen 167 YLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP----------------------------------------------- 199 (569)
T ss_pred hhhheeeEEechhhhhhhcccHHHHHHHHHhCC-----------------------------------------------
Confidence 477899999999999999999999999888775
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
+..|.++||||+..+...+-..++.++ ....+...... ....+.++
T Consensus 200 -------------------------------r~~Q~~LmSATl~dDv~~LKkL~l~nP--viLkl~e~el~-~~dqL~Qy 245 (569)
T KOG0346|consen 200 -------------------------------RIYQCFLMSATLSDDVQALKKLFLHNP--VILKLTEGELP-NPDQLTQY 245 (569)
T ss_pred -------------------------------chhhheeehhhhhhHHHHHHHHhccCC--eEEEeccccCC-CcccceEE
Confidence 678999999999866655544444432 22222233222 45568899
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccC-CcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~v 476 (548)
++.++...++..+...++-.+ -.++.|||+|+++.|.++.-.|...|+..+.++|.|+...|..+++.|..+ .++
T Consensus 246 ~v~cse~DKflllyallKL~L----I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Ydi 321 (569)
T KOG0346|consen 246 QVKCSEEDKFLLLYALLKLRL----IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDI 321 (569)
T ss_pred EEEeccchhHHHHHHHHHHHH----hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeE
Confidence 999998888888777776653 467999999999999999999999999999999999999999999999955 599
Q ss_pred EEEeCc-----------------------------------ccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcc
Q 045757 477 FVCTDA-----------------------------------AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG 521 (548)
Q Consensus 477 Lv~T~~-----------------------------------~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G 521 (548)
+||||. .+||||+.+|..|||||+|.+...|+||+||++|+|++|
T Consensus 322 vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 322 VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCC
Confidence 999991 269999999999999999999999999999999999999
Q ss_pred eEEEEeecCchhHHHHHHHHHH
Q 045757 522 LVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 522 ~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
.+++|+.+.+..-...|+..+.
T Consensus 402 talSfv~P~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 402 TALSFVSPKEEFGKESLESILK 423 (569)
T ss_pred ceEEEecchHHhhhhHHHHHHh
Confidence 9999999998886666666543
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1e-53 Score=433.28 Aligned_cols=357 Identities=24% Similarity=0.400 Sum_probs=285.5
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...+|+++++++.+.+++.++||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+...
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------------ 93 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------------ 93 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------------
Confidence 45679999999999999999999999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..+.++||++|+++|+.|+.+.+..+....+ +.+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 94 --~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--- 165 (401)
T PTZ00424 94 --LNACQALILAPTRELAQQIQKVVLALGDYLK---VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH--- 165 (401)
T ss_pred --CCCceEEEECCCHHHHHHHHHHHHHHhhhcC---ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---
Confidence 2356899999999999999999999876554 6666677775432 3568999999999988875432
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||+|++++.++...+..++..++
T Consensus 166 -~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------------- 199 (401)
T PTZ00424 166 -LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------------------------------------------- 199 (401)
T ss_pred -cccccccEEEEecHHHHHhcchHHHHHHHHhhCC---------------------------------------------
Confidence 3478899999999999999888888777765543
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|++++|||++..........+.. ...+...........+.
T Consensus 200 ---------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 242 (401)
T PTZ00424 200 ---------------------------------PDVQVALFSATMPNEILELTTKFMRD----PKRILVKKDELTLEGIR 242 (401)
T ss_pred ---------------------------------CCcEEEEEEecCCHHHHHHHHHHcCC----CEEEEeCCCCcccCCce
Confidence 45899999999985433333332221 11111111111122233
Q ss_pred cceeeecch-hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 396 EKWIEVTVD-TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 396 ~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
+.+..+... .+...+...+.. ....++||||+++..++.+++.|.+.++.+..+||+|+..+|..+++.|+ ++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~ 317 (401)
T PTZ00424 243 QFYVAVEKEEWKFDTLCDLYET-----LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS 317 (401)
T ss_pred EEEEecChHHHHHHHHHHHHHh-----cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 333333322 233333333322 34568999999999999999999999999999999999999999999999 67
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++++.+.++.+++.+...+
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~ 390 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQI 390 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999998876543
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=402.89 Aligned_cols=356 Identities=24% Similarity=0.391 Sum_probs=308.4
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
..+.+..+|.++.++..+++.|++.|+..|||+|.+.+|.++.|+|.|-.|-||||||++|.||++-..++...
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~------ 237 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM------ 237 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh------
Confidence 44567788999999999999999999999999999999999999999999999999999999999877665421
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh---cccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhc
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS---ADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l 228 (548)
.-......++..||+||+++|+.|+.+.+..+. ...|.|.++...+.||.... +.+.+|+|+||++|.+++
T Consensus 238 ~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 238 MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 112334468899999999999999988777654 44567788988899997765 578999999999999999
Q ss_pred ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
..+. ..+.-++++++||||+|++.+|...+..++..++
T Consensus 318 ~KK~----~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK-------------------------------------- 355 (610)
T KOG0341|consen 318 AKKI----MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK-------------------------------------- 355 (610)
T ss_pred HHhh----ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh--------------------------------------
Confidence 6553 4477789999999999999999999999998775
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
..+|.++||||+|.....++...+ ..+..+......
T Consensus 356 ----------------------------------------~QRQTLLFSATMP~KIQ~FAkSAL----VKPvtvNVGRAG 391 (610)
T KOG0341|consen 356 ----------------------------------------GQRQTLLFSATMPKKIQNFAKSAL----VKPVTVNVGRAG 391 (610)
T ss_pred ----------------------------------------hhhheeeeeccccHHHHHHHHhhc----ccceEEeccccc
Confidence 568999999999976666655433 344455555555
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
..+-++.+....+..+.|+..+++.|.+ ...++||||.....+..+.++|--.|+.+..+||+-++++|...++
T Consensus 392 AAsldViQevEyVkqEaKiVylLeCLQK------T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 392 AASLDVIQEVEYVKQEAKIVYLLECLQK------TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred ccchhHHHHHHHHHhhhhhhhHHHHhcc------CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 5566677777778888899999988876 4789999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
.|+ ++.+|||||++++.|+|+|++.||||||+|..+++|+||+||+||.|+.|.+..|.++..
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999 788999999999999999999999999999999999999999999999999999999963
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.9e-52 Score=443.06 Aligned_cols=354 Identities=23% Similarity=0.305 Sum_probs=268.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
+++.+.++|+++||+.|+++|.++++.+++|+|+++++|||||||++|++|+++.+.+. ++.++|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---------------~~~~aL 85 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---------------PRATAL 85 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---------------CCcEEE
Confidence 88999999999999999999999999999999999999999999999999999998653 357899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
||+||++|+.|+.+.++++. ..+ +++..+.|+.... ..+++|+|+||+++...+......+..+++++++|
T Consensus 86 ~l~PtraLa~q~~~~l~~l~-~~~---i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~v 161 (742)
T TIGR03817 86 YLAPTKALAADQLRAVRELT-LRG---VRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYV 161 (742)
T ss_pred EEcChHHHHHHHHHHHHHhc-cCC---eEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEE
Confidence 99999999999999999986 223 7888888876532 45689999999999754322222233458899999
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||||.+.+ .|+..+..++++++
T Consensus 162 ViDEah~~~g-~fg~~~~~il~rL~------------------------------------------------------- 185 (742)
T TIGR03817 162 VIDECHSYRG-VFGSHVALVLRRLR------------------------------------------------------- 185 (742)
T ss_pred EEeChhhccC-ccHHHHHHHHHHHH-------------------------------------------------------
Confidence 9999999864 58888888877663
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeec---
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT--- 402 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 402 (548)
++...++..+|++++|||++... ..+..++.... ..+..+... ........+...
T Consensus 186 ----------------ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~---~~i~~~~~~--~~~~~~~~~~p~~~~ 243 (742)
T TIGR03817 186 ----------------RLCARYGASPVFVLASATTADPA-AAASRLIGAPV---VAVTEDGSP--RGARTVALWEPPLTE 243 (742)
T ss_pred ----------------HHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCe---EEECCCCCC--cCceEEEEecCCccc
Confidence 23333456789999999998543 33333333211 111111000 000000000000
Q ss_pred --c-------hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--------CCceEEecCCCCHHHHHH
Q 045757 403 --V-------DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--------GIECYCYHKDLSLEERAK 465 (548)
Q Consensus 403 --~-------~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~ 465 (548)
. ........+.+...+. .+.++||||+|++.++.++..|.+. +..+..|||++++++|.+
T Consensus 244 ~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ 320 (742)
T TIGR03817 244 LTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRE 320 (742)
T ss_pred cccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHH
Confidence 0 0011122233333321 3579999999999999999998764 567889999999999999
Q ss_pred HHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC--chhHHHHHHHHH
Q 045757 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES--NRDLVDTIRRAA 542 (548)
Q Consensus 466 ~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~--~~~~~~~i~~~~ 542 (548)
++++|+ ++.++||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.+++++.++ |...++.+++.+
T Consensus 321 ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 321 LERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 999999 67799999999999999999999999999999999999999999999999999998754 555666666655
Q ss_pred Hc
Q 045757 543 KL 544 (548)
Q Consensus 543 ~~ 544 (548)
+.
T Consensus 401 ~~ 402 (742)
T TIGR03817 401 DR 402 (742)
T ss_pred cC
Confidence 53
No 29
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-52 Score=392.41 Aligned_cols=378 Identities=24% Similarity=0.326 Sum_probs=286.2
Q ss_pred HHHHHHHHCCCCCCcHHHHhhhhccc---------CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 94 RLIRALENSGFGRPSIVQAASVGPVL---------SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 94 ~l~~~l~~~~~~~~~~~Q~~~i~~i~---------~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
.+.+++..+++.+.+|+|...+|.++ .++|+.|.||||||||++|.+||++.+..+ ..
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-------------~v 213 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-------------PV 213 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-------------Cc
Confidence 34455889999999999999999885 257999999999999999999999998654 12
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----------CCCCcEEEeChHHHHhhcChhhh
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
+.-++|||+||++|+.|+++.+.++..+.| +.|+...|..+.. ....||+|+||++|.+++.+.+
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tg---L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k- 289 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTG---LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK- 289 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCc---eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-
Confidence 357999999999999999999999999988 8888888876543 2245999999999999998754
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccH-----HHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDE-----KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
.+.+.+++++|+||||+|++..|++++..+...+.... ..+-+...+.. +.
T Consensus 290 --~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~--pt-------------------- 345 (620)
T KOG0350|consen 290 --SFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQ--PT-------------------- 345 (620)
T ss_pred --CcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCC--ch--------------------
Confidence 35688999999999999999999999988877665331 11111100000 00
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
................+.+++|||+.....++....+..+.-....-.....-
T Consensus 346 ---------------------------~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ry 398 (620)
T KOG0350|consen 346 ---------------------------VLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRY 398 (620)
T ss_pred ---------------------------hhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceee
Confidence 00000001112234566889999998776665544333211110000001111
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHH----HcCCceEEecCCCCHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILK----TAGIECYCYHKDLSLEERA 464 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~ 464 (548)
...+.+.+..+......+...+...+.. ....++|+|+++...+.+++..|+ +...++..+.|+++...|.
T Consensus 399 slp~~l~~~~vv~~~~~kpl~~~~lI~~-----~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~ 473 (620)
T KOG0350|consen 399 SLPSSLSHRLVVTEPKFKPLAVYALITS-----NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRY 473 (620)
T ss_pred ecChhhhhceeecccccchHhHHHHHHH-----hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHH
Confidence 2234455556666665666666666665 467899999999999999999887 3456778899999999999
Q ss_pred HHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 465 KTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 465 ~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+.++.|. ++.+||||+|+++||+|+.+++.||+||+|.+...|+||+||++|+|+.|.|+.+....+...+.++-.-.+
T Consensus 474 k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 474 KMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred HHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999 888999999999999999999999999999999999999999999999999999999998888777765444
Q ss_pred c
Q 045757 544 L 544 (548)
Q Consensus 544 ~ 544 (548)
.
T Consensus 554 ~ 554 (620)
T KOG0350|consen 554 L 554 (620)
T ss_pred c
Confidence 3
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-51 Score=374.52 Aligned_cols=356 Identities=22% Similarity=0.398 Sum_probs=295.5
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
..+|++|+|.+++++.+..|+|..|+.+|..++|.++.. +|+|.++..|+|||.+|.|.++.++
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv-------------- 154 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV-------------- 154 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc--------------
Confidence 357999999999999999999999999999999999976 8999999999999999999999887
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccCC---CCcEEEeChHHHHhhcChhhhhccc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIG---KPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
.+....+.+++|+||++|+.|+.+.+.++++..+ +.+....-+....++ ..+|+|+||+-+.+++..-+ ..
T Consensus 155 d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~---ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk---~i 228 (477)
T KOG0332|consen 155 DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE---LTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK---CI 228 (477)
T ss_pred CccccCCCceeeCchHHHHHHHHHHHHHhcCcee---eeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH---hh
Confidence 3445678899999999999999999999998875 666666665544443 25799999999999885422 34
Q ss_pred cccCeeEEEEecchhhccC-ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 238 FVRGVKYVVFDEADMLLCG-SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
.+..++++|+||||.+++. ||+.+-.+|...++
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP---------------------------------------------- 262 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP---------------------------------------------- 262 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccchhhhhhcC----------------------------------------------
Confidence 4788999999999977654 68777777766553
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
+..|.+++|||+......++... .++...+.......+...+++
T Consensus 263 --------------------------------~~~QllLFSATf~e~V~~Fa~ki----vpn~n~i~Lk~eel~L~~IkQ 306 (477)
T KOG0332|consen 263 --------------------------------RNQQLLLFSATFVEKVAAFALKI----VPNANVIILKREELALDNIKQ 306 (477)
T ss_pred --------------------------------CcceEEeeechhHHHHHHHHHHh----cCCCceeeeehhhccccchhh
Confidence 57899999999975555555444 444445544455556667888
Q ss_pred ceeeecch-hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 397 KWIEVTVD-TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 397 ~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
++..+... .|+..+.+ |... ..-+..||||.+++++..++..|...|..+..+||+|+..+|..++++|+ ++.
T Consensus 307 lyv~C~~~~~K~~~l~~-lyg~----~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~ 381 (477)
T KOG0332|consen 307 LYVLCACRDDKYQALVN-LYGL----LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE 381 (477)
T ss_pred heeeccchhhHHHHHHH-HHhh----hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc
Confidence 88777554 46666665 3322 34679999999999999999999999999999999999999999999999 677
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCC------CCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHHcC
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFA------TSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAKLG 545 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~~~ 545 (548)
+|||+|++++||||++.|++|||||+| .+.+.|+||+||+||.|+.|.++.|+... ....+++|++-.+..
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999 47899999999999999999999999886 567777888766543
No 31
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-51 Score=388.60 Aligned_cols=363 Identities=26% Similarity=0.409 Sum_probs=313.1
Q ss_pred CCceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCC
Q 045757 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154 (548)
Q Consensus 75 ~~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~ 154 (548)
+...++.+.++|+.+|++..|..+..+..|..|||+|.+++|..+.|++++-.|.||||||-+|+.|++..++...
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~---- 289 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP---- 289 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh----
Confidence 3556677889999999999999999999999999999999999999999999999999999999999999987541
Q ss_pred CCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhc
Q 045757 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l 228 (548)
.-....++..||+|||++||.|+..+++++++..+ +++++++||...- ..++.||||||++|.+++
T Consensus 290 -----eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg---l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~V 361 (731)
T KOG0339|consen 290 -----ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG---LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMV 361 (731)
T ss_pred -----hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc---ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHH
Confidence 12234678999999999999999999999999888 8999999886532 478999999999999999
Q ss_pred ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
.-+ ..++.++.++||||+|+|.+.+|.+++..|..+++
T Consensus 362 kmK----atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir-------------------------------------- 399 (731)
T KOG0339|consen 362 KMK----ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR-------------------------------------- 399 (731)
T ss_pred Hhh----cccceeeeEEEEechhhhhccccHHHHHHHHhhcC--------------------------------------
Confidence 654 35588999999999999999999999999998886
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
+.+|.++||||++....+.+...+.+. ..+......
T Consensus 400 ----------------------------------------pdrQtllFsaTf~~kIe~lard~L~dp----VrvVqg~vg 435 (731)
T KOG0339|consen 400 ----------------------------------------PDRQTLLFSATFKKKIEKLARDILSDP----VRVVQGEVG 435 (731)
T ss_pred ----------------------------------------CcceEEEeeccchHHHHHHHHHHhcCC----eeEEEeehh
Confidence 569999999999977777777766653 333333555
Q ss_pred ccCcccccceeeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHH
Q 045757 389 FHNPRLKEKWIEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 467 (548)
..+.++.+.+..+.. +.|+.-+++.|... ...+++|||+.....++.++..|+-.++.|..+||+|.+.+|.+++
T Consensus 436 ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f----~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 436 EANEDITQTVSVCPSEEKKLNWLLRHLVEF----SSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred ccccchhheeeeccCcHHHHHHHHHHhhhh----ccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 666677776655544 44566666666553 4567999999999999999999999999999999999999999999
Q ss_pred Hhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 468 ~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
..|+ +...|||+|+++++|+|||++..||+||...++..+.||+||+||+|..|.++++++++|....-.|-
T Consensus 512 s~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 512 SKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred HHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHH
Confidence 9999 55799999999999999999999999999999999999999999999999999999999886444433
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-51 Score=421.49 Aligned_cols=369 Identities=27% Similarity=0.451 Sum_probs=317.6
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCC
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~ 155 (548)
...-+.+.++|.+.|++..++..++++||..|+|||.+|||+|+.|+|+|.+|.||||||++|+||++..+...
T Consensus 357 g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQ------ 430 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQ------ 430 (997)
T ss_pred cCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcC------
Confidence 34446788899999999999999999999999999999999999999999999999999999999999655322
Q ss_pred CCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcC
Q 045757 156 SNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNID 229 (548)
Q Consensus 156 ~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~ 229 (548)
.......++.+||++||++|+.|+.++++.+.+..+ +++++++|+.+.. +.++.|+||||+++.+++.
T Consensus 431 ---r~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~---ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~ 504 (997)
T KOG0334|consen 431 ---RPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG---IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILC 504 (997)
T ss_pred ---CChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC---ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHh
Confidence 112233589999999999999999999999999888 9999999998765 4569999999999999986
Q ss_pred hhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhh
Q 045757 230 PKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309 (548)
Q Consensus 230 ~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (548)
.+... ..++.++.++|+||||+|.+.+|..++..|+..++
T Consensus 505 ~n~gr-vtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr--------------------------------------- 544 (997)
T KOG0334|consen 505 ANSGR-VTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR--------------------------------------- 544 (997)
T ss_pred hcCCc-cccccccceeeechhhhhheeccCcccchHHhhcc---------------------------------------
Confidence 65433 45577777999999999999999999988988876
Q ss_pred hcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccc
Q 045757 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF 389 (548)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (548)
..+|.+++|||++.....++...+. .|....+. ....
T Consensus 545 ---------------------------------------pdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~--~~sv 581 (997)
T KOG0334|consen 545 ---------------------------------------PDRQTVLFSATFPRSMEALARKVLK--KPVEIIVG--GRSV 581 (997)
T ss_pred ---------------------------------------hhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEc--ccee
Confidence 4699999999999876666666666 23332222 3333
Q ss_pred cCcccccceeeec-chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 390 HNPRLKEKWIEVT-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 390 ~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
.+..+.+.+..+. .+.|+..+.+.|.... ...++||||.+...|..+.+.|.+.|+.|..+||+.++.+|..+++
T Consensus 582 V~k~V~q~v~V~~~e~eKf~kL~eLl~e~~----e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 582 VCKEVTQVVRVCAIENEKFLKLLELLGERY----EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred EeccceEEEEEecCchHHHHHHHHHHHHHh----hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHH
Confidence 3445556666665 7889999999988864 4789999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+|+ +.+.+||||+++++|+|++.+.+|||||+|.-..+|+||+||+||+|+.|.|++|.++.+.++.-.|-+++.
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~ 733 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALE 733 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHH
Confidence 999 667999999999999999999999999999999999999999999999999999999988888878877764
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-50 Score=370.48 Aligned_cols=359 Identities=25% Similarity=0.445 Sum_probs=312.6
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
.+-+-..+|++++|++.|++.++..||++|+.+|+.||..+..|.|+++++.+|+|||.+|.+++++.+-
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---------- 89 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---------- 89 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC----------
Confidence 3344455899999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcCh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
.......+|+++|+++|+.|+.+...+++...+ .++..+.|+.... ...++|+++||+++.++++.
T Consensus 90 ----~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~---~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~ 162 (397)
T KOG0327|consen 90 ----MSVKETQALILAPTRELAQQIQKVVRALGDHMD---VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR 162 (397)
T ss_pred ----cchHHHHHHHhcchHHHHHHHHHHHHhhhcccc---eeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc
Confidence 123456899999999999999999999998877 7888888876655 34589999999999999976
Q ss_pred hhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (548)
.. .....+++.|+||+|.++..+|..++..++.+++
T Consensus 163 ~~----l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp---------------------------------------- 198 (397)
T KOG0327|consen 163 GS----LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP---------------------------------------- 198 (397)
T ss_pred cc----ccccceeEEeecchHhhhccchHHHHHHHHHHcC----------------------------------------
Confidence 52 3366799999999999999999999999998886
Q ss_pred cccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccccc
Q 045757 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH 390 (548)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (548)
...|.+++|||.+.+.......++. .+.++........
T Consensus 199 --------------------------------------~~vQv~l~SAT~p~~vl~vt~~f~~----~pv~i~vkk~~lt 236 (397)
T KOG0327|consen 199 --------------------------------------SDVQVVLLSATMPSDVLEVTKKFMR----EPVRILVKKDELT 236 (397)
T ss_pred --------------------------------------cchhheeecccCcHHHHHHHHHhcc----CceEEEecchhhh
Confidence 4579999999999766655555444 3444444444444
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhh
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
...++++++.+..+.|+..+..+... ....+||||++..+..+..+|...+..+..+|++|.+.+|..+++.|
T Consensus 237 l~gikq~~i~v~k~~k~~~l~dl~~~-------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 237 LEGIKQFYINVEKEEKLDTLCDLYRR-------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred hhheeeeeeeccccccccHHHHHHHh-------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHh
Confidence 56677888888888888888877763 56899999999999999999999999999999999999999999999
Q ss_pred c-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 471 ~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
+ +..+|||.|+.+++|+|+..++.||+|++|...++|+||+||+||.|.+|.++.++++.+...++++++++...+
T Consensus 310 ~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i 386 (397)
T KOG0327|consen 310 RSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPI 386 (397)
T ss_pred hcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcc
Confidence 9 666999999999999999999999999999999999999999999999999999999999999999999987543
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-49 Score=416.16 Aligned_cols=341 Identities=19% Similarity=0.247 Sum_probs=253.3
Q ss_pred Ccccc--cCCCHHHHHHHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 84 VTWKS--LGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 84 ~~~~~--l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
..|.. +++...+...++ .+|+..++|+|.++|+.++.|+|++++||||+|||+||++|++..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 34664 456677777775 469999999999999999999999999999999999999999852
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------------CCCCcEEEeChHHHHhh-
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------------IGKPDVIVSTPAALLNN- 227 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~Ilv~Tp~~l~~~- 227 (548)
.+.+|||+|+++|+++++..+.... +++..+.++.... .+.++|+|+||++|...
T Consensus 500 -----~GiTLVISPLiSLmqDQV~~L~~~G-------I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d 567 (1195)
T PLN03137 500 -----PGITLVISPLVSLIQDQIMNLLQAN-------IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSD 567 (1195)
T ss_pred -----CCcEEEEeCHHHHHHHHHHHHHhCC-------CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcch
Confidence 3679999999999998777766543 7888888876533 15789999999998531
Q ss_pred -cChhhhhccccccCeeEEEEecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhh
Q 045757 228 -IDPKRRRRMEFVRGVKYVVFDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEE 304 (548)
Q Consensus 228 -l~~~~~~~~~~~~~~~~vV~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (548)
+.... ........+.+|||||||++++|+ |......+-.
T Consensus 568 ~ll~~L-~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~------------------------------------- 609 (1195)
T PLN03137 568 SLLRHL-ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGI------------------------------------- 609 (1195)
T ss_pred HHHHHH-HhhhhccccceeccCcchhhhhcccchHHHHHHHHH-------------------------------------
Confidence 11110 111113458899999999999987 4444433210
Q ss_pred hhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccc
Q 045757 305 NLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG 384 (548)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~ 384 (548)
++..+ ...+++++|||++......+...+... ....+..
T Consensus 610 --------------------------------------Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~--~~~vfr~ 648 (1195)
T PLN03137 610 --------------------------------------LKQKF-PNIPVLALTATATASVKEDVVQALGLV--NCVVFRQ 648 (1195)
T ss_pred --------------------------------------HHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCC--CcEEeec
Confidence 01111 356789999999876665544443311 1111111
Q ss_pred ccccccCcccccceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHH
Q 045757 385 NYLHFHNPRLKEKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEER 463 (548)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 463 (548)
. ...+++. +..+.... ....+.+.+.. ...+..+||||++++.++.+++.|.+.|+.+..|||+|+.++|
T Consensus 649 S---f~RpNL~--y~Vv~k~kk~le~L~~~I~~----~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 649 S---FNRPNLW--YSVVPKTKKCLEDIDKFIKE----NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQR 719 (1195)
T ss_pred c---cCccceE--EEEeccchhHHHHHHHHHHh----cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHH
Confidence 1 1112221 11111111 12333333332 2345689999999999999999999999999999999999999
Q ss_pred HHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 464 AKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 464 ~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
..+++.|. ++.+|||||+++++|||+|+|++||||++|.|.+.|+||+|||||.|..|.|++||+..|...++.+.
T Consensus 720 ~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 720 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred HHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999 77899999999999999999999999999999999999999999999999999999988876666554
No 35
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-50 Score=371.99 Aligned_cols=356 Identities=31% Similarity=0.438 Sum_probs=307.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
.-+|+++||+..+.+++.+.||+.|+|+|++.+|.++++++++-.+-||||||.||++|+++++....
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------------ 87 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------------ 87 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc------------
Confidence 34699999999999999999999999999999999999999999999999999999999999997651
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
..+.++|++.||++|+.|..+..+.+++..+ ++..++.|+.... ..++|||++||+++..+.....
T Consensus 88 -~~g~RalilsptreLa~qtlkvvkdlgrgt~---lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~---- 159 (529)
T KOG0337|consen 88 -QTGLRALILSPTRELALQTLKVVKDLGRGTK---LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT---- 159 (529)
T ss_pred -ccccceeeccCcHHHHHHHHHHHHHhccccc---hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee----
Confidence 3478999999999999999999999999887 8888888877654 4589999999999977654322
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
..++.+.||||||+|++.+.+|++++..++..++
T Consensus 160 l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~---------------------------------------------- 193 (529)
T KOG0337|consen 160 LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP---------------------------------------------- 193 (529)
T ss_pred ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC----------------------------------------------
Confidence 3488999999999999999999999999998875
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
.+.|.++||||+|...-.++..-+.+ +..+..+........+..
T Consensus 194 --------------------------------~~~QTllfSatlp~~lv~fakaGl~~----p~lVRldvetkise~lk~ 237 (529)
T KOG0337|consen 194 --------------------------------ESRQTLLFSATLPRDLVDFAKAGLVP----PVLVRLDVETKISELLKV 237 (529)
T ss_pred --------------------------------CcceEEEEeccCchhhHHHHHccCCC----CceEEeehhhhcchhhhh
Confidence 45799999999995543333333222 111122222344455666
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
.+..+..+.+..+|+..+...+ ...+++|||.+.++++.+...|...|+.+..+++.|++..|..-+.+|+ ++..
T Consensus 238 ~f~~~~~a~K~aaLl~il~~~~----~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~ 313 (529)
T KOG0337|consen 238 RFFRVRKAEKEAALLSILGGRI----KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS 313 (529)
T ss_pred heeeeccHHHHHHHHHHHhccc----cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc
Confidence 7778888889999998887753 3568999999999999999999999999999999999999999999999 6779
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHc
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~ 544 (548)
+||.|++++||+|+|..+.|||||.|.+..-|+||+||+.|+|+.|.+|+++.+.+..++-.|.-+++.
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999888877653
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.5e-49 Score=401.57 Aligned_cols=326 Identities=21% Similarity=0.273 Sum_probs=244.8
Q ss_pred HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 100 ~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
+.+||..|+|+|.++++.+++|+|++++||||+|||++|++|++.. ++.+|||+|+++|+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------------~~~~lVi~P~~~L~ 64 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------------DGITLVISPLISLM 64 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------------CCcEEEEecHHHHH
Confidence 3569999999999999999999999999999999999999998742 46799999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEec
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DE 249 (548)
.|+++.++.+. +.+..+.++.... .+.++|+++||+++....... .......++++||+||
T Consensus 65 ~dq~~~l~~~g-------i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~--~~l~~~~~i~~iViDE 135 (470)
T TIGR00614 65 EDQVLQLKASG-------IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLL--QTLEERKGITLIAVDE 135 (470)
T ss_pred HHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHH--HHHHhcCCcCEEEEeC
Confidence 99999888753 6677777765432 356899999999985432111 1111357899999999
Q ss_pred chhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccc
Q 045757 250 ADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLT 327 (548)
Q Consensus 250 ah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (548)
||++++|+ |......+.. +
T Consensus 136 aH~i~~~g~~fr~~~~~l~~-l---------------------------------------------------------- 156 (470)
T TIGR00614 136 AHCISQWGHDFRPDYKALGS-L---------------------------------------------------------- 156 (470)
T ss_pred CcccCccccccHHHHHHHHH-H----------------------------------------------------------
Confidence 99998876 4444333211 1
Q ss_pred cccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhH
Q 045757 328 EETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV 407 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (548)
+.. .+..+++++|||++..........+.-. ........ ...+++.. .+........
T Consensus 157 ----------------~~~-~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s---~~r~nl~~-~v~~~~~~~~ 213 (470)
T TIGR00614 157 ----------------KQK-FPNVPIMALTATASPSVREDILRQLNLK--NPQIFCTS---FDRPNLYY-EVRRKTPKIL 213 (470)
T ss_pred ----------------HHH-cCCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCC---CCCCCcEE-EEEeCCccHH
Confidence 011 1357899999999855443333222111 11111100 11111111 1111111234
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccccc
Q 045757 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARG 486 (548)
Q Consensus 408 ~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~G 486 (548)
..+.+.+.. ...++++||||++++.++.+++.|.+.++.+..+||+|+.++|.++++.|+ ++.+|||||+++++|
T Consensus 214 ~~l~~~l~~----~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 214 EDLLRFIRK----EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMG 289 (470)
T ss_pred HHHHHHHHH----hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 445555543 235667899999999999999999999999999999999999999999999 777999999999999
Q ss_pred CCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHH
Q 045757 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540 (548)
Q Consensus 487 iDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~ 540 (548)
||+|+|++|||+++|.|...|+||+||+||.|..|.|++||++.|...++.+..
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998887776643
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.1e-48 Score=375.35 Aligned_cols=360 Identities=20% Similarity=0.325 Sum_probs=293.9
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCC
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~ 155 (548)
....+.....|+++.|...++..|+..+|..|+++|..|||.++.+.|+||+|..|+|||++|.+.+++.+..
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------- 89 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------- 89 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-------
Confidence 3344455667999999999999999999999999999999999999999999999999999999999988733
Q ss_pred CCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcCh
Q 045757 156 SNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 156 ~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
......++||+|||+++.|+.+.+.+++.... .+++.++.||.... .+.++|+|+||+++.++++.
T Consensus 90 -------~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~--g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el 160 (980)
T KOG4284|consen 90 -------RSSHIQKVIVTPTREIAVQIKETVRKVAPSFT--GARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL 160 (980)
T ss_pred -------ccCcceeEEEecchhhhhHHHHHHHHhccccc--CcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh
Confidence 24567899999999999999999999987432 18999999998765 46789999999999999865
Q ss_pred hhhhccccccCeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (548)
. ..+.+.++++|+||||.|++ .+|+..+..|+..++
T Consensus 161 ~----~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP--------------------------------------- 197 (980)
T KOG4284|consen 161 G----AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP--------------------------------------- 197 (980)
T ss_pred c----CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc---------------------------------------
Confidence 4 45688999999999999998 679999999998775
Q ss_pred hcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccc
Q 045757 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF 389 (548)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (548)
..+|++.+|||.+.+.......++. ++..+.......
T Consensus 198 ---------------------------------------~~rQv~a~SATYp~nLdn~Lsk~mr----dp~lVr~n~~d~ 234 (980)
T KOG4284|consen 198 ---------------------------------------QIRQVAAFSATYPRNLDNLLSKFMR----DPALVRFNADDV 234 (980)
T ss_pred ---------------------------------------hhheeeEEeccCchhHHHHHHHHhc----ccceeecccCCc
Confidence 6799999999999665555444443 444444333333
Q ss_pred cCcccccceeeecchh-h---HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHH
Q 045757 390 HNPRLKEKWIEVTVDT-Q---VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465 (548)
Q Consensus 390 ~~~~~~~~~~~~~~~~-~---~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 465 (548)
..-.+++++..+.... . +...++.|.+.+. .-+-..+||||+....|+-++.+|...|+.|-++.|.|++.+|..
T Consensus 235 ~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~-~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 235 QLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK-SIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred eeechhheeeeccCCcchHHHHHHHHHHHHHHHh-hCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 3345666665544332 1 1122222222221 134568999999999999999999999999999999999999999
Q ss_pred HHHhhcc-CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCc-hhHHHHH
Q 045757 466 TLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVDTI 538 (548)
Q Consensus 466 ~~~~f~~-~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~-~~~~~~i 538 (548)
++..++. .++|||+||..+||||-++|++|||.|.|.+.++|.||+|||||.|..|.++.|+.... .+-+..+
T Consensus 314 a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 314 AVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred HHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999995 56999999999999999999999999999999999999999999999999999887754 3555444
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.5e-47 Score=397.53 Aligned_cols=330 Identities=22% Similarity=0.287 Sum_probs=246.2
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCE
Q 045757 91 LSDRLIRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169 (548)
Q Consensus 91 l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
........|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. .+.+
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------------~g~t 68 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------------DGLT 68 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------------CCCE
Confidence 44444555644 69999999999999999999999999999999999999998842 3579
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccc
Q 045757 170 LVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFV 239 (548)
Q Consensus 170 Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 239 (548)
|||+|+++|+.|+++.++.+. +.+..+.++.... .+..+++++||+++....... ....
T Consensus 69 lVisPl~sL~~dqv~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~----~l~~ 137 (607)
T PRK11057 69 LVVSPLISLMKDQVDQLLANG-------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE----HLAH 137 (607)
T ss_pred EEEecHHHHHHHHHHHHHHcC-------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH----HHhh
Confidence 999999999999999888763 5666666654322 356899999999986321111 1123
Q ss_pred cCeeEEEEecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 240 RGVKYVVFDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 240 ~~~~~vV~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.++++||+||||++.+|+ |......+- .+
T Consensus 138 ~~l~~iVIDEaH~i~~~G~~fr~~y~~L~-~l------------------------------------------------ 168 (607)
T PRK11057 138 WNPALLAVDEAHCISQWGHDFRPEYAALG-QL------------------------------------------------ 168 (607)
T ss_pred CCCCEEEEeCccccccccCcccHHHHHHH-HH------------------------------------------------
Confidence 468999999999998876 333332221 11
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
+..+ +..+++++|||++..........+... ........ ...+++.
T Consensus 169 --------------------------~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~---~~r~nl~-- 214 (607)
T PRK11057 169 --------------------------RQRF-PTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISS---FDRPNIR-- 214 (607)
T ss_pred --------------------------HHhC-CCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECC---CCCCcce--
Confidence 1111 357899999999865543333222210 11100000 1111111
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
+...........+...+.. ..++++||||++++.++.+++.|.+.++.+..+|++|+.++|.++++.|+ ++.+|
T Consensus 215 ~~v~~~~~~~~~l~~~l~~-----~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~V 289 (607)
T PRK11057 215 YTLVEKFKPLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQI 289 (607)
T ss_pred eeeeeccchHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCE
Confidence 1122222334455555443 35789999999999999999999999999999999999999999999998 77799
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
||||+++++|||+|+|++|||+++|.|...|+||+||+||.|.+|.|++||+..|...++.+.
T Consensus 290 LVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877666543
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-47 Score=368.48 Aligned_cols=366 Identities=24% Similarity=0.357 Sum_probs=296.7
Q ss_pred eeecCCCccccc----CCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCC
Q 045757 78 FFADDNVTWKSL----GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153 (548)
Q Consensus 78 ~~~~~~~~~~~l----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~ 153 (548)
..+....+|.+| ..+..+++.+...+|..|+|+|.+|+|.++.+++++.|||||+|||++|.+|++..+.....
T Consensus 126 ~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-- 203 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-- 203 (593)
T ss_pred CCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc--
Confidence 336667778874 68899999999999999999999999999999999999999999999999999999976521
Q ss_pred CCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh--cccCCCcEEEEEEeCCCC-------ccCCCCcEEEeChHHH
Q 045757 154 ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS--ADNGEPLVRAVAVCGGQG-------WPIGKPDVIVSTPAAL 224 (548)
Q Consensus 154 ~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~g~~~-------~~~~~~~Ilv~Tp~~l 224 (548)
.....+-+++|+.|+++|+.|+++++.++. ...+ .++..+..... .....++|+++||-++
T Consensus 204 -------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~---~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri 273 (593)
T KOG0344|consen 204 -------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS---LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI 273 (593)
T ss_pred -------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc---hhhhhcccccchhhccchhHHHHHHHHhcCHHHH
Confidence 223356799999999999999999999998 4333 44444433322 1235689999999999
Q ss_pred HhhcChhhhhccccccCeeEEEEecchhhccC-ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhh
Q 045757 225 LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG-SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303 (548)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (548)
..++..... ...++.+.++|+||+|++.+. .|..++..++..+..
T Consensus 274 ~~~~~~~~~--~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------------------------------- 319 (593)
T KOG0344|consen 274 VGLLGLGKL--NIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------------------------------- 319 (593)
T ss_pred HHHhcCCCc--cchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC--------------------------------
Confidence 888865431 134788999999999999998 899999999877641
Q ss_pred hhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccc
Q 045757 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWIS 383 (548)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~ 383 (548)
....+-+||||.+....+.+..... +...+.
T Consensus 320 ---------------------------------------------~~i~~a~FSat~~~~VEE~~~~i~~----~~~~vi 350 (593)
T KOG0344|consen 320 ---------------------------------------------PDIRVALFSATISVYVEEWAELIKS----DLKRVI 350 (593)
T ss_pred ---------------------------------------------cchhhhhhhccccHHHHHHHHHhhc----cceeEE
Confidence 3466778899998666655544433 233333
Q ss_pred cccccccCcccccceeee-cchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHH-HHcCCceEEecCCCCHH
Q 045757 384 GNYLHFHNPRLKEKWIEV-TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL-KTAGIECYCYHKDLSLE 461 (548)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~~~~~~~~~ 461 (548)
.+........+.+....+ +...++.++.+.+... -..+++||+++.+.|..|.+.| .--++.+.++||..++.
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~ 425 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASG-----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQK 425 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhcc-----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchh
Confidence 332223344455554444 4455777787777763 5679999999999999999999 56688999999999999
Q ss_pred HHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHH
Q 045757 462 ERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540 (548)
Q Consensus 462 ~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~ 540 (548)
+|.+++++|+ ++.-||+||++++||+|+.+++.|||||.|.+...|+||+||+||+|+.|.++.||++.|...++.|..
T Consensus 426 qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 426 QRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred HHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 9999999999 888999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 045757 541 AAK 543 (548)
Q Consensus 541 ~~~ 543 (548)
...
T Consensus 506 ~~~ 508 (593)
T KOG0344|consen 506 VME 508 (593)
T ss_pred HHH
Confidence 655
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-46 Score=403.39 Aligned_cols=341 Identities=21% Similarity=0.264 Sum_probs=256.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.|++++|++.+.+.+++.||..|+|+|.+|++. +.+|+|++++||||||||++|.++++..+..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 488999999999999999999999999999998 7789999999999999999999999998842
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhcccccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVR 240 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 240 (548)
+.++||++|+++|+.|+++.++.+.. .| +++..++|+.... ...++|+|+||+++..++.+. ..+++
T Consensus 67 --~~kal~i~P~raLa~q~~~~~~~~~~-~g---~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~----~~~l~ 136 (737)
T PRK02362 67 --GGKALYIVPLRALASEKFEEFERFEE-LG---VRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG----APWLD 136 (737)
T ss_pred --CCcEEEEeChHHHHHHHHHHHHHhhc-CC---CEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC----hhhhh
Confidence 57899999999999999999997643 24 7888888876543 246899999999998887543 23478
Q ss_pred CeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC
Q 045757 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320 (548)
Q Consensus 241 ~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
++++||+||+|++.+.+++..++.++.+++.
T Consensus 137 ~v~lvViDE~H~l~d~~rg~~le~il~rl~~------------------------------------------------- 167 (737)
T PRK02362 137 DITCVVVDEVHLIDSANRGPTLEVTLAKLRR------------------------------------------------- 167 (737)
T ss_pred hcCEEEEECccccCCCcchHHHHHHHHHHHh-------------------------------------------------
Confidence 8999999999999988999999988876641
Q ss_pred CCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccc--cccCccc--cc
Q 045757 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL--HFHNPRL--KE 396 (548)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~--~~ 396 (548)
.....|++++|||++. .+.+..+ +........+-..... ......+ ..
T Consensus 168 --------------------------~~~~~qii~lSATl~n-~~~la~w-l~~~~~~~~~rpv~l~~~v~~~~~~~~~~ 219 (737)
T PRK02362 168 --------------------------LNPDLQVVALSATIGN-ADELADW-LDAELVDSEWRPIDLREGVFYGGAIHFDD 219 (737)
T ss_pred --------------------------cCCCCcEEEEcccCCC-HHHHHHH-hCCCcccCCCCCCCCeeeEecCCeecccc
Confidence 1235799999999973 2333222 2211000000000000 0000000 00
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-----------------------------
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----------------------------- 447 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------- 447 (548)
.........+ ......+.+.+ ..++++||||++++.|+.++..|.+.
T Consensus 220 ~~~~~~~~~~-~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (737)
T PRK02362 220 SQREVEVPSK-DDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETS 295 (737)
T ss_pred ccccCCCccc-hHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcccc
Confidence 0000000011 22222232222 25689999999999999999888643
Q ss_pred -------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ec-----CCCCHHHHHHH
Q 045757 448 -------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----AD-----FATSAVDFLHR 510 (548)
Q Consensus 448 -------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~-----~p~s~~~~~Qr 510 (548)
...+++||++|+..+|..+++.|+ +..+|||||+++++|+|+|++++||+ || .|.+..+|.||
T Consensus 296 ~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm 375 (737)
T PRK02362 296 KDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQM 375 (737)
T ss_pred HHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHH
Confidence 136899999999999999999999 67799999999999999999999997 65 58899999999
Q ss_pred hcccccCCCc--ceEEEEeecCc
Q 045757 511 VGRTARAGQY--GLVTSLYTESN 531 (548)
Q Consensus 511 ~GR~gR~g~~--G~~i~~~~~~~ 531 (548)
+|||||.|.. |.+++++...+
T Consensus 376 ~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 376 AGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hhcCCCCCCCCCceEEEEecCch
Confidence 9999999876 99999987653
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-45 Score=389.68 Aligned_cols=323 Identities=24% Similarity=0.321 Sum_probs=245.8
Q ss_pred HHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 98 ALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 98 ~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
.|+ .+||..++|+|.++++.+++|+|++++||||+|||++|++|++.. ++.++||+|++
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------------~g~~lVisPl~ 63 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------------KGLTVVISPLI 63 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------------CCcEEEEcCCH
Confidence 454 479999999999999999999999999999999999999998742 45789999999
Q ss_pred HHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEE
Q 045757 177 VLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246 (548)
Q Consensus 177 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV 246 (548)
+|+.|+++.++++. +.+..+.++.... .+..+|+++||+++...... ......++++||
T Consensus 64 sL~~dq~~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~----~~l~~~~l~~iV 132 (591)
T TIGR01389 64 SLMKDQVDQLRAAG-------VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL----NMLQRIPIALVA 132 (591)
T ss_pred HHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH----HHHhcCCCCEEE
Confidence 99999999988863 6677777765432 35789999999998543211 122355799999
Q ss_pred EecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcc
Q 045757 247 FDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324 (548)
Q Consensus 247 ~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (548)
+||||++.+|+ |......+....
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~------------------------------------------------------- 157 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLA------------------------------------------------------- 157 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHH-------------------------------------------------------
Confidence 99999998876 444433332111
Q ss_pred ccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecch
Q 045757 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD 404 (548)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (548)
..+ +..+++++|||.+..........+.... ...+.. ....+++ .+......
T Consensus 158 --------------------~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~---~~~r~nl--~~~v~~~~ 209 (591)
T TIGR01389 158 --------------------ERF-PQVPRIALTATADAETRQDIRELLRLAD--ANEFIT---SFDRPNL--RFSVVKKN 209 (591)
T ss_pred --------------------HhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEec---CCCCCCc--EEEEEeCC
Confidence 111 2345899999998665544443332111 111100 0111111 12222233
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcc
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAA 483 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~ 483 (548)
.+...+.+.+.. ..+.++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|. ++.+|||||+++
T Consensus 210 ~~~~~l~~~l~~-----~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~ 284 (591)
T TIGR01389 210 NKQKFLLDYLKK-----HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAF 284 (591)
T ss_pred CHHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechh
Confidence 445556665554 23678999999999999999999999999999999999999999999999 677999999999
Q ss_pred cccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 484 ~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
++|||+|++++|||+++|.|...|.||+||+||.|..|.|+++|+..|...++.+.
T Consensus 285 ~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 285 GMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred hccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876655543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-44 Score=393.14 Aligned_cols=348 Identities=21% Similarity=0.242 Sum_probs=248.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||||||++|.+|++..+..... ......+..+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~--------~~~~~~~~~~L 88 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGR--------EGELEDKVYCL 88 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcc--------ccCCCCCeEEE
Confidence 67777777766 6889999999999999999999999999999999999999998875310 01112356899
Q ss_pred EEcCcHHHHHHHHHHHHH-------hhcccC--CCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 171 VLCPNVVLCEQVVRMANA-------LSADNG--EPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~-------~~~~~~--~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
||+|+++|+.|+.+.+.+ +....| .+.+++...+|+.... .+.++|+|+||++|..++......
T Consensus 89 yIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~- 167 (876)
T PRK13767 89 YVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFR- 167 (876)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHH-
Confidence 999999999999876553 222112 1237888888887643 357899999999998877654322
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||+|.+.+..++..+..++.++..
T Consensus 168 -~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~-------------------------------------------- 202 (876)
T PRK13767 168 -EKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEE-------------------------------------------- 202 (876)
T ss_pred -HHHhcCCEEEEechhhhccCccHHHHHHHHHHHHH--------------------------------------------
Confidence 24788999999999999988888888777766531
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCC-----CCccccccccccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP-----DADWISGNYLHFH 390 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ 390 (548)
......|.+++|||++.. ..... ++..... ....+...+....
T Consensus 203 ------------------------------l~~~~~q~IglSATl~~~-~~va~-~L~~~~~~~~~r~~~iv~~~~~k~~ 250 (876)
T PRK13767 203 ------------------------------LAGGEFVRIGLSATIEPL-EEVAK-FLVGYEDDGEPRDCEIVDARFVKPF 250 (876)
T ss_pred ------------------------------hcCCCCeEEEEecccCCH-HHHHH-HhcCccccCCCCceEEEccCCCccc
Confidence 112457899999999642 22222 2221100 0011111100000
Q ss_pred Cccc---ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc------CCceEEecCCCCHH
Q 045757 391 NPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLE 461 (548)
Q Consensus 391 ~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~~~~~~~~ 461 (548)
...+ ...............+...+.+.+ ..++++||||||+..|+.++..|.+. +..+..+||+|+.+
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i---~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELI---KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHH---hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 0000 000001111112233334444333 24678999999999999999999873 46799999999999
Q ss_pred HHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCC-CcceEEEEee
Q 045757 462 ERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG-QYGLVTSLYT 528 (548)
Q Consensus 462 ~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g-~~G~~i~~~~ 528 (548)
+|..+++.|+ ++.+|||||+++++|||+|++++||+++.|.+..+|+||+||+||.+ ..+.++++..
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999 66799999999999999999999999999999999999999999874 3344444443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-44 Score=387.38 Aligned_cols=337 Identities=20% Similarity=0.247 Sum_probs=252.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
+|+++++++.+.+.+++.||..|+|+|.++++. +++|+|++++||||||||++|.+|+++.+...
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 578899999999999999999999999999986 78999999999999999999999999987643
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhcccccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVR 240 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 240 (548)
+.++|||+|+++|+.|+++.++.+. ..+ +++..++|+.... .+.++|+|+||+++..++.... .+++
T Consensus 68 --~~~~l~l~P~~aLa~q~~~~~~~~~-~~g---~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~----~~l~ 137 (720)
T PRK00254 68 --GGKAVYLVPLKALAEEKYREFKDWE-KLG---LRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS----SWIK 137 (720)
T ss_pred --CCeEEEEeChHHHHHHHHHHHHHHh-hcC---CEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc----hhhh
Confidence 5789999999999999999998764 334 7888888876543 3468999999999988775432 3478
Q ss_pred CeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC
Q 045757 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320 (548)
Q Consensus 241 ~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
++++||+||+|++.+.+++..++.++..+.
T Consensus 138 ~l~lvViDE~H~l~~~~rg~~le~il~~l~-------------------------------------------------- 167 (720)
T PRK00254 138 DVKLVVADEIHLIGSYDRGATLEMILTHML-------------------------------------------------- 167 (720)
T ss_pred cCCEEEEcCcCccCCccchHHHHHHHHhcC--------------------------------------------------
Confidence 899999999999988889888888876553
Q ss_pred CCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceee
Q 045757 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400 (548)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (548)
...|++++|||++. ...+.. ++........+- ..........+....
T Consensus 168 ----------------------------~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~r---pv~l~~~~~~~~~~~ 214 (720)
T PRK00254 168 ----------------------------GRAQILGLSATVGN-AEELAE-WLNAELVVSDWR---PVKLRKGVFYQGFLF 214 (720)
T ss_pred ----------------------------cCCcEEEEEccCCC-HHHHHH-HhCCccccCCCC---CCcceeeEecCCeee
Confidence 35799999999974 333333 222111000000 000000000011111
Q ss_pred ecch--hh-HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc------------------------------
Q 045757 401 VTVD--TQ-VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------------------------------ 447 (548)
Q Consensus 401 ~~~~--~~-~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------ 447 (548)
.... .+ ...+...+.+.+ ..++++||||++++.|+.++..|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i---~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAV---KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred ccCcchhcchHHHHHHHHHHH---HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 1110 01 122222233322 24679999999999999888766421
Q ss_pred ---CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE-------ecCC-CCHHHHHHHhcccc
Q 045757 448 ---GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ-------ADFA-TSAVDFLHRVGRTA 515 (548)
Q Consensus 448 ---~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~-------~~~p-~s~~~~~Qr~GR~g 515 (548)
...+.+||++|+.++|..+++.|+ +..+|||||+++++|+|+|++++||. ++.| .+..+|.||+||||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 235899999999999999999999 66799999999999999999999994 4443 35779999999999
Q ss_pred cCC--CcceEEEEeecCc
Q 045757 516 RAG--QYGLVTSLYTESN 531 (548)
Q Consensus 516 R~g--~~G~~i~~~~~~~ 531 (548)
|.| ..|.+++++...+
T Consensus 372 R~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCcCCCceEEEEecCcc
Confidence 975 5699999998765
No 44
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7e-44 Score=355.70 Aligned_cols=327 Identities=23% Similarity=0.276 Sum_probs=253.2
Q ss_pred HHHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 97 RALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 97 ~~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
..|+ -+|+..+++-|.++|..+++|+|+++.+|||+|||+||.+|++-. .+.+|||.|.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------------------~G~TLVVSPL 66 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------------------EGLTLVVSPL 66 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------------------CCCEEEECch
Confidence 4454 459999999999999999999999999999999999999998754 3689999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 176 VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 176 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
.+|++++++.+++.+ +.+..+.+..... .+..++++-+||+|..--..+. ..-..+.++
T Consensus 67 iSLM~DQV~~l~~~G-------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~ 135 (590)
T COG0514 67 ISLMKDQVDQLEAAG-------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLV 135 (590)
T ss_pred HHHHHHHHHHHHHcC-------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceE
Confidence 999999999999876 7888887774432 4568999999999965422111 113468899
Q ss_pred EEecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCc
Q 045757 246 VFDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323 (548)
Q Consensus 246 V~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (548)
|+||||++++|| |.....++-..
T Consensus 136 vIDEAHCiSqWGhdFRP~Y~~lg~l------------------------------------------------------- 160 (590)
T COG0514 136 AIDEAHCISQWGHDFRPDYRRLGRL------------------------------------------------------- 160 (590)
T ss_pred EechHHHHhhcCCccCHhHHHHHHH-------------------------------------------------------
Confidence 999999999997 55444443221
Q ss_pred cccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc
Q 045757 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV 403 (548)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (548)
...++ ...++.++||.+......+...+.-....... .....+++........
T Consensus 161 --------------------~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~-----~sfdRpNi~~~v~~~~- 213 (590)
T COG0514 161 --------------------RAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR-----GSFDRPNLALKVVEKG- 213 (590)
T ss_pred --------------------HhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE-----ecCCCchhhhhhhhcc-
Confidence 22222 57889999999877666665555432111111 1122233333322222
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
.....+. ++.+ ......+..||||.|++.++.++++|.+.|+.+..||++|+.++|..+.++|. ++.+|+|||.+
T Consensus 214 -~~~~q~~-fi~~--~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 214 -EPSDQLA-FLAT--VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred -cHHHHHH-HHHh--hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 1111111 3332 11245778999999999999999999999999999999999999999999999 77899999999
Q ss_pred ccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHH
Q 045757 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~ 540 (548)
+++|||.|+|++||||++|.|.+.|.|.+|||||.|.+..|++||++.|..+.+.+.+
T Consensus 290 FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 290 FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876666554
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-42 Score=371.24 Aligned_cols=334 Identities=19% Similarity=0.226 Sum_probs=245.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
.|+++++++.+.+.+.+.+++ ++++|.++++.+.+|+|++++||||||||+++.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------------
Confidence 478899999999999999986 999999999999999999999999999999999999987743
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccC
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~ 241 (548)
+.++||++|+++|+.|+++.++++. ..| +++....|+.... ...++|+|+||+++..++... ...+.+
T Consensus 65 -~~k~v~i~P~raLa~q~~~~~~~l~-~~g---~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~----~~~l~~ 135 (674)
T PRK01172 65 -GLKSIYIVPLRSLAMEKYEELSRLR-SLG---MRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD----PYIIND 135 (674)
T ss_pred -CCcEEEEechHHHHHHHHHHHHHHh-hcC---CeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC----hhHHhh
Confidence 4689999999999999999998764 334 6777777765433 256899999999998777543 234788
Q ss_pred eeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCC
Q 045757 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDS 321 (548)
Q Consensus 242 ~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (548)
+++||+||+|++.+.+++..++.++..++.
T Consensus 136 v~lvViDEaH~l~d~~rg~~le~ll~~~~~-------------------------------------------------- 165 (674)
T PRK01172 136 VGLIVADEIHIIGDEDRGPTLETVLSSARY-------------------------------------------------- 165 (674)
T ss_pred cCEEEEecchhccCCCccHHHHHHHHHHHh--------------------------------------------------
Confidence 999999999999888888888888765531
Q ss_pred CccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC-cccc-ccee
Q 045757 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN-PRLK-EKWI 399 (548)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 399 (548)
.....|++++|||++. ...+.. ++.... +......... ..+. ....
T Consensus 166 -------------------------~~~~~riI~lSATl~n-~~~la~-wl~~~~-----~~~~~r~vpl~~~i~~~~~~ 213 (674)
T PRK01172 166 -------------------------VNPDARILALSATVSN-ANELAQ-WLNASL-----IKSNFRPVPLKLGILYRKRL 213 (674)
T ss_pred -------------------------cCcCCcEEEEeCccCC-HHHHHH-HhCCCc-----cCCCCCCCCeEEEEEecCee
Confidence 1235789999999963 333332 221100 1000000000 0000 0000
Q ss_pred eecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------------------------CCceEE
Q 045757 400 EVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-------------------------GIECYC 453 (548)
Q Consensus 400 ~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~ 453 (548)
...... ....+...+.+.. ..++++||||++++.++.++..|.+. ...+.+
T Consensus 214 ~~~~~~~~~~~~~~~i~~~~---~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 214 ILDGYERSQVDINSLIKETV---NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred eecccccccccHHHHHHHHH---hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEE
Confidence 011111 1111222233221 35789999999999999999988653 125789
Q ss_pred ecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecC---------CCCHHHHHHHhcccccCCC--cc
Q 045757 454 YHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADF---------ATSAVDFLHRVGRTARAGQ--YG 521 (548)
Q Consensus 454 ~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~---------p~s~~~~~Qr~GR~gR~g~--~G 521 (548)
+||+|+.++|..+++.|+ +..+|||||+++++|+|+|+.. ||+.+. |.+..+|.||+|||||.|. .|
T Consensus 291 ~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g 369 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYG 369 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcc
Confidence 999999999999999999 6679999999999999999865 444442 5688999999999999985 57
Q ss_pred eEEEEeecC
Q 045757 522 LVTSLYTES 530 (548)
Q Consensus 522 ~~i~~~~~~ 530 (548)
.+++++...
T Consensus 370 ~~~i~~~~~ 378 (674)
T PRK01172 370 IGYIYAASP 378 (674)
T ss_pred eEEEEecCc
Confidence 788777654
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=359.07 Aligned_cols=352 Identities=22% Similarity=0.258 Sum_probs=266.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
|++.+.++++.. |..|||.|.+|+|.+.+|+|+++.||||||||+++.||++..+.+.. ......+..+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------~~~~~~~i~~l 77 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---------KGKLEDGIYAL 77 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------CCCCCCceEEE
Confidence 789999999888 89999999999999999999999999999999999999999998761 12223467899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccccCeeE
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~ 244 (548)
||.|.++|..++.+.+..++...| +.+..-+|+.... .+.|||+|+|||.|.-++.+.+.+ ..+.++++
T Consensus 78 YIsPLkALn~Di~~rL~~~~~~~G---~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r--~~l~~vr~ 152 (814)
T COG1201 78 YISPLKALNNDIRRRLEEPLRELG---IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFR--ELLRDVRY 152 (814)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcC---CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHH--HHhcCCcE
Confidence 999999999999999999999888 6677777876533 578999999999999888876443 45899999
Q ss_pred EEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcc
Q 045757 245 VVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324 (548)
Q Consensus 245 vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (548)
||+||+|.+.+...+.++...+++++
T Consensus 153 VIVDEiHel~~sKRG~~Lsl~LeRL~------------------------------------------------------ 178 (814)
T COG1201 153 VIVDEIHALAESKRGVQLALSLERLR------------------------------------------------------ 178 (814)
T ss_pred EEeehhhhhhccccchhhhhhHHHHH------------------------------------------------------
Confidence 99999999998888888877776654
Q ss_pred ccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceee-ecc
Q 045757 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE-VTV 403 (548)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 403 (548)
...+ ..|.+++|||.. +....+..+... ...+..+.........-.+...... ...
T Consensus 179 --------------------~l~~-~~qRIGLSATV~-~~~~varfL~g~-~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 179 --------------------ELAG-DFQRIGLSATVG-PPEEVAKFLVGF-GDPCEIVDVSAAKKLEIKVISPVEDLIYD 235 (814)
T ss_pred --------------------hhCc-ccEEEeehhccC-CHHHHHHHhcCC-CCceEEEEcccCCcceEEEEecCCccccc
Confidence 1122 689999999997 333333333222 1011111111110000000000000 000
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC-CceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG-IECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
+......++.+.+.+ .....+|||+||+..++.++..|++.+ ..+..|||.++.+.|.++.++|+ |+.+.+|||+
T Consensus 236 ~~~~~~~~~~i~~~v---~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 236 EELWAALYERIAELV---KKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred cchhHHHHHHHHHHH---hhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 122333444444433 234599999999999999999999987 89999999999999999999999 6779999999
Q ss_pred cccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC-CCcceEEEEeecCchhHHHHH
Q 045757 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA-GQYGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~-g~~G~~i~~~~~~~~~~~~~i 538 (548)
.++-|||+.+++.|||++.|.+...++||+||+|+. |..-+.+.+..+ ..+.++++
T Consensus 313 SLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~ 369 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECL 369 (814)
T ss_pred chhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHH
Confidence 999999999999999999999999999999999975 444666655555 34444443
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.3e-41 Score=359.86 Aligned_cols=325 Identities=16% Similarity=0.200 Sum_probs=236.6
Q ss_pred CCHHHHHHHH-HCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 91 LSDRLIRALE-NSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 91 l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+..+...+. .++| .||+.|.+|++.++++ +|.+++|+||+|||.+|+++++..+..
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------------- 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------------- 499 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------------
Confidence 4455666664 4688 5999999999999875 699999999999999999999887743
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhh
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
+.+++|++||++||.|+++.++++....+ +++..++|+.... .+.++|+|+||..+..
T Consensus 500 --g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~---i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~------- 567 (926)
T TIGR00580 500 --GKQVAVLVPTTLLAQQHFETFKERFANFP---VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQK------- 567 (926)
T ss_pred --CCeEEEEeCcHHHHHHHHHHHHHHhccCC---cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhC-------
Confidence 46899999999999999999999887665 7788887765421 3569999999954421
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
...+.++++||+||+|++ +......+..+
T Consensus 568 --~v~f~~L~llVIDEahrf-----gv~~~~~L~~~-------------------------------------------- 596 (926)
T TIGR00580 568 --DVKFKDLGLLIIDEEQRF-----GVKQKEKLKEL-------------------------------------------- 596 (926)
T ss_pred --CCCcccCCEEEeeccccc-----chhHHHHHHhc--------------------------------------------
Confidence 123678999999999984 22222222211
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
....|+++||||+.+.. ....+.. ..+...+..... ....
T Consensus 597 ----------------------------------~~~~~vL~~SATpiprt---l~~~l~g-~~d~s~I~~~p~--~R~~ 636 (926)
T TIGR00580 597 ----------------------------------RTSVDVLTLSATPIPRT---LHMSMSG-IRDLSIIATPPE--DRLP 636 (926)
T ss_pred ----------------------------------CCCCCEEEEecCCCHHH---HHHHHhc-CCCcEEEecCCC--Cccc
Confidence 24589999999975321 1111111 111111111110 0111
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhc
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+...+.... ...+.+.+...+ ..+++++|||++++.++.+++.|++. +..+..+||+|+.++|.+++++|+
T Consensus 637 V~t~v~~~~----~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 637 VRTFVMEYD----PELVREAIRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred eEEEEEecC----HHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 222222211 122222332222 34689999999999999999999985 678999999999999999999999
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCC-CHHHHHHHhcccccCCCcceEEEEeecC------chhHHHHHHHH
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-SAVDFLHRVGRTARAGQYGLVTSLYTES------NRDLVDTIRRA 541 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~G~~i~~~~~~------~~~~~~~i~~~ 541 (548)
++.+|||||+++++|||+|++++||+++++. +..+|.||+||+||.|+.|.|++++.+. ..+.++.|++.
T Consensus 710 ~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 710 KGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 7789999999999999999999999999864 6789999999999999999999999653 34555555554
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.3e-40 Score=346.96 Aligned_cols=312 Identities=19% Similarity=0.218 Sum_probs=228.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 045757 94 RLIRALENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167 (548)
Q Consensus 94 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
.+.+.++.++| +||+.|.+|++.++.+ .+.+++|+||||||++|++|++..+.. +.
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------------g~ 285 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------------GY 285 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------------CC
Confidence 34455578888 7999999999999865 368999999999999999999987732 57
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 168 PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 168 ~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
+++|++||++|+.|+++.+++++...+ +++..++|+.... .+.++|+|+||+.+.+.+
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~g---i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~--------- 353 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLG---IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV--------- 353 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccC---cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---------
Confidence 899999999999999999999988776 8899999986532 356899999999875432
Q ss_pred cccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.+.++++||+||+|++... +-..+.....
T Consensus 354 ~~~~l~lvVIDEaH~fg~~----qr~~l~~~~~----------------------------------------------- 382 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVE----QRKKLREKGQ----------------------------------------------- 382 (630)
T ss_pred cccccceEEEechhhccHH----HHHHHHHhcc-----------------------------------------------
Confidence 2678999999999985211 1111111100
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
....+++++||||+.+. ......... ...............+...
T Consensus 383 -----------------------------~~~~~~~l~~SATp~pr--tl~l~~~~~----l~~~~i~~~p~~r~~i~~~ 427 (630)
T TIGR00643 383 -----------------------------GGFTPHVLVMSATPIPR--TLALTVYGD----LDTSIIDELPPGRKPITTV 427 (630)
T ss_pred -----------------------------cCCCCCEEEEeCCCCcH--HHHHHhcCC----cceeeeccCCCCCCceEEE
Confidence 00247899999997532 111111111 0000000111111111111
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCCh--------hHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHH
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV--------DAVYAVTKILKTA--GIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~ 467 (548)
+. .. .....+++.+.+.+ ..+.+++|||+.. ..++.+++.|.+. +..+..+||+|+.++|.+++
T Consensus 428 ~~--~~-~~~~~~~~~i~~~l---~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 428 LI--KH-DEKDIVYEFIEEEI---AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred Ee--Cc-chHHHHHHHHHHHH---HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 11 11 22245555555543 3568999999976 4566777777764 67899999999999999999
Q ss_pred Hhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC-CHHHHHHHhcccccCCCcceEEEEe
Q 045757 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-SAVDFLHRVGRTARAGQYGLVTSLY 527 (548)
Q Consensus 468 ~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~G~~i~~~ 527 (548)
+.|+ ++.+|||||+++++|||+|++++||+++.|. +..+|.||+||+||.|+.|.|++++
T Consensus 502 ~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 502 EEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999 6789999999999999999999999999986 6888999999999999999999999
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.3e-40 Score=342.50 Aligned_cols=330 Identities=17% Similarity=0.164 Sum_probs=228.8
Q ss_pred HHHHH-CCCCCCcHHHHhhhhcccCCC-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE-EEc
Q 045757 97 RALEN-SGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL-VLC 173 (548)
Q Consensus 97 ~~l~~-~~~~~~~~~Q~~~i~~i~~g~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L-il~ 173 (548)
..+++ .||+ |+|||.++++.++.|+ ++++++|||||||.++.++++... .. ...++.| +++
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~~--------------~~~~~rLv~~v 69 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-IG--------------AKVPRRLVYVV 69 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-cc--------------ccccceEEEeC
Confidence 34433 5887 9999999999999997 677789999999997665555221 10 1234444 577
Q ss_pred CcHHHHHHHHHHHHHhhcccC--------------------CCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhh
Q 045757 174 PNVVLCEQVVRMANALSADNG--------------------EPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNN 227 (548)
Q Consensus 174 Pt~~L~~q~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~ 227 (548)
||++|+.|+++.+.++.+... ...+++.+++||.... ..+++|||+|++.+..-
T Consensus 70 PtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr 149 (844)
T TIGR02621 70 NRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSR 149 (844)
T ss_pred chHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCC
Confidence 999999999999999887541 2248899999997764 46799999997655322
Q ss_pred cCh-h----hh---hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCC
Q 045757 228 IDP-K----RR---RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPD 299 (548)
Q Consensus 228 l~~-~----~~---~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (548)
... . .. .....+.+++++|+|||| ++.+|...+..|+..+...
T Consensus 150 ~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp--------------------------- 200 (844)
T TIGR02621 150 LLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP--------------------------- 200 (844)
T ss_pred ccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC---------------------------
Confidence 210 0 00 001136789999999999 5788999999998753100
Q ss_pred chhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCC
Q 045757 300 LQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDA 379 (548)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~ 379 (548)
......|+++||||++.........++....
T Consensus 201 ----------------------------------------------~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~--- 231 (844)
T TIGR02621 201 ----------------------------------------------PDFLPLRVVELTATSRTDGPDRTTLLSAEDY--- 231 (844)
T ss_pred ----------------------------------------------cccccceEEEEecCCCccHHHHHHHHccCCc---
Confidence 0002369999999998655544333332211
Q ss_pred cccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCC
Q 045757 380 DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
.+...........+.+ ++......+...++..+...+. ..++++|||||+++.++.+++.|.+.++ ..+||+|+
T Consensus 232 -~i~V~~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~ 305 (844)
T TIGR02621 232 -KHPVLKKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLMK--DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLR 305 (844)
T ss_pred -eeecccccccccceEE-EEecChHHHHHHHHHHHHHHHh--hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCC
Confidence 1111111111112222 2333334445455544433321 3467999999999999999999998876 89999999
Q ss_pred HHHHH-----HHHHhhcc----C--------CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCc-c
Q 045757 460 LEERA-----KTLVNFQE----K--------GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY-G 521 (548)
Q Consensus 460 ~~~r~-----~~~~~f~~----~--------~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-G 521 (548)
+.+|. .+++.|+. + ..|||||+++++|||++. ++||++..| ...|+||+||+||.|+. |
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999 78899974 1 479999999999999986 899987776 68999999999999986 4
Q ss_pred eEEEEeec
Q 045757 522 LVTSLYTE 529 (548)
Q Consensus 522 ~~i~~~~~ 529 (548)
..+.++..
T Consensus 383 ~~i~vv~~ 390 (844)
T TIGR02621 383 CQIAVVHL 390 (844)
T ss_pred ceEEEEee
Confidence 44556544
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.3e-39 Score=345.42 Aligned_cols=312 Identities=17% Similarity=0.247 Sum_probs=229.7
Q ss_pred HHHHHHH-HHCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 045757 93 DRLIRAL-ENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPP 165 (548)
Q Consensus 93 ~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~ 165 (548)
..+.+.+ ..++| .||++|.++++.+..+ ++.+++|+||||||++|++|++..+. .
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------------~ 309 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------------A 309 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------------c
Confidence 3444444 56677 6999999999999876 48999999999999999999998773 2
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc----------cCCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW----------PIGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.+++|++||++|+.|+++.+++++...+ +++..++|+... ..+.++|+|+||+.+.+.+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~---i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v------- 379 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLG---IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV------- 379 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcC---cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-------
Confidence 57899999999999999999999998777 889999998763 2457999999998874322
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
.+.++++||+||+|++... ....+..
T Consensus 380 --~~~~l~lvVIDE~Hrfg~~-----qr~~l~~----------------------------------------------- 405 (681)
T PRK10917 380 --EFHNLGLVIIDEQHRFGVE-----QRLALRE----------------------------------------------- 405 (681)
T ss_pred --hhcccceEEEechhhhhHH-----HHHHHHh-----------------------------------------------
Confidence 3678999999999985211 1111100
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
....+++++||||+.+.. ......... +...+. ........+.
T Consensus 406 -------------------------------~~~~~~iL~~SATp~prt--l~~~~~g~~--~~s~i~--~~p~~r~~i~ 448 (681)
T PRK10917 406 -------------------------------KGENPHVLVMTATPIPRT--LAMTAYGDL--DVSVID--ELPPGRKPIT 448 (681)
T ss_pred -------------------------------cCCCCCEEEEeCCCCHHH--HHHHHcCCC--ceEEEe--cCCCCCCCcE
Confidence 012478999999975321 111111110 011111 0111111122
Q ss_pred cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCCh--------hHHHHHHHHHHHc--CCceEEecCCCCHHHHHH
Q 045757 396 EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV--------DAVYAVTKILKTA--GIECYCYHKDLSLEERAK 465 (548)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~--------~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~ 465 (548)
..+ ........+++.+.+.+ ..+.+++|||+.+ ..++.+++.|.+. +..+..+||+|+.++|.+
T Consensus 449 ~~~---~~~~~~~~~~~~i~~~~---~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 449 TVV---IPDSRRDEVYERIREEI---AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred EEE---eCcccHHHHHHHHHHHH---HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 221 12233345555555544 4578999999964 3556778888766 468999999999999999
Q ss_pred HHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC-CHHHHHHHhcccccCCCcceEEEEeec
Q 045757 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-SAVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 466 ~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
++++|+ ++.+|||||+++++|||+|++++||++++|. +..+|.||+||+||.|..|.|++++..
T Consensus 523 i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 523 VMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred HHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 999999 6779999999999999999999999999986 578899999999999999999999953
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1e-39 Score=357.48 Aligned_cols=321 Identities=18% Similarity=0.173 Sum_probs=230.9
Q ss_pred HHHHHHHCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 045757 95 LIRALENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP 168 (548)
Q Consensus 95 l~~~l~~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
..+....++| .||+.|.+||+.++.+ +|++++|+||+|||.+|+.++...+. .+.+
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------------~g~q 651 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------------NHKQ 651 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------------cCCe
Confidence 3344467788 7999999999999986 79999999999999999888776652 2578
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 169 ~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
++|++||++|+.|+++.+++.....+ +++..+.|+.... .+.++|+|+||+.+... ..
T Consensus 652 vlvLvPT~eLA~Q~~~~f~~~~~~~~---v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---------v~ 719 (1147)
T PRK10689 652 VAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---------VK 719 (1147)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCC---ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---------CC
Confidence 99999999999999999998765544 6777777765432 25789999999755311 12
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
+.+++++|+||+|++ ++. ....++.+
T Consensus 720 ~~~L~lLVIDEahrf---G~~--~~e~lk~l------------------------------------------------- 745 (1147)
T PRK10689 720 WKDLGLLIVDEEHRF---GVR--HKERIKAM------------------------------------------------- 745 (1147)
T ss_pred HhhCCEEEEechhhc---chh--HHHHHHhc-------------------------------------------------
Confidence 568999999999986 221 11222222
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
....|++++|||+.+....+....+ .+...+..... ....+....
T Consensus 746 -----------------------------~~~~qvLl~SATpiprtl~l~~~gl----~d~~~I~~~p~--~r~~v~~~~ 790 (1147)
T PRK10689 746 -----------------------------RADVDILTLTATPIPRTLNMAMSGM----RDLSIIATPPA--RRLAVKTFV 790 (1147)
T ss_pred -----------------------------CCCCcEEEEcCCCCHHHHHHHHhhC----CCcEEEecCCC--CCCCceEEE
Confidence 2468999999998643322222111 12222211111 011122222
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
....... +.+.+...+ ..+++++||||+++.++.+++.|.+. +..+..+||+|+.++|.+++.+|+ ++.+
T Consensus 791 ~~~~~~~----~k~~il~el---~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~ 863 (1147)
T PRK10689 791 REYDSLV----VREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 (1147)
T ss_pred EecCcHH----HHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 2211111 122222221 24678999999999999999999987 678999999999999999999999 7789
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCC-CCHHHHHHHhcccccCCCcceEEEEeecC------chhHHHHHHHH
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFA-TSAVDFLHRVGRTARAGQYGLVTSLYTES------NRDLVDTIRRA 541 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~------~~~~~~~i~~~ 541 (548)
|||||+++++|||+|++++||..+.. .+..+|.||+||+||.|+.|.|++++... ..+.++.|++.
T Consensus 864 VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999999976553 46788999999999999999999988653 24555555554
No 52
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-41 Score=289.70 Aligned_cols=326 Identities=23% Similarity=0.391 Sum_probs=261.7
Q ss_pred CCceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCC
Q 045757 75 SDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154 (548)
Q Consensus 75 ~~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~ 154 (548)
..++.+-....|.++-|.+++++++-+.||+.|+..|.+|||...-|.|++++|..|-|||.+|.|..++++
T Consensus 33 kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqi-------- 104 (387)
T KOG0329|consen 33 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI-------- 104 (387)
T ss_pred cCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhc--------
Confidence 345666677789999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhc
Q 045757 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l 228 (548)
.+.+....+|++|.|++|+-|+.++..++.+.. |.+++..++||.... .+-|+|+|+||++++.+.
T Consensus 105 ------epv~g~vsvlvmchtrelafqi~~ey~rfskym--P~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALv 176 (387)
T KOG0329|consen 105 ------EPVDGQVSVLVMCHTRELAFQISKEYERFSKYM--PSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALV 176 (387)
T ss_pred ------CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhC--CCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHH
Confidence 444556789999999999999999999888775 348999999997765 346899999999999998
Q ss_pred ChhhhhccccccCeeEEEEecchhhccC-ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCG-SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQ 307 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (548)
.++. ..+.+++..|+||||.++++ ..+..+..++++-
T Consensus 177 r~k~----l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t-------------------------------------- 214 (387)
T KOG0329|consen 177 RNRS----LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT-------------------------------------- 214 (387)
T ss_pred Hhcc----CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Confidence 7654 45889999999999987654 3444455554433
Q ss_pred hhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccc
Q 045757 308 DEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL 387 (548)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (548)
+...|++++|||++...+......++++.... ..+..
T Consensus 215 ----------------------------------------p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~---vDdE~ 251 (387)
T KOG0329|consen 215 ----------------------------------------PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIF---VDDEA 251 (387)
T ss_pred ----------------------------------------cccceeeeeeeecchhhHHHHHhhhcCchhhh---ccchh
Confidence 46799999999999887777766666533221 12222
Q ss_pred cccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHH
Q 045757 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 467 (548)
......+.++++.+....|...+.+.+... .-..++||+.+....
T Consensus 252 KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L-----eFNQVvIFvKsv~Rl------------------------------ 296 (387)
T KOG0329|consen 252 KLTLHGLQQYYVKLKENEKNRKLNDLLDVL-----EFNQVVIFVKSVQRL------------------------------ 296 (387)
T ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-----hhcceeEeeehhhhh------------------------------
Confidence 233345677788887777777777666553 346899999887651
Q ss_pred HhhccCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHH
Q 045757 468 VNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRR 540 (548)
Q Consensus 468 ~~f~~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~ 540 (548)
. | ..+ +|+|+.++||+|+..++.|||||+|.+..+|+||+|||||.|..|.+|.|++.. +...+..+++
T Consensus 297 ~-f--~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 297 S-F--QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred h-h--hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 0 2 123 899999999999999999999999999999999999999999999999999885 4556666655
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.3e-39 Score=353.84 Aligned_cols=312 Identities=22% Similarity=0.236 Sum_probs=213.2
Q ss_pred EEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcc-------cC--CC
Q 045757 126 IAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-------NG--EP 196 (548)
Q Consensus 126 i~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~-------~~--~~ 196 (548)
|+||||||||++|.||+++.+....... ........+.++|||+|+++|+.|+.+.++..... .+ ..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~----~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~ 76 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGED----TREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEV 76 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccc----ccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 5799999999999999999997541000 00001123578999999999999999988753221 11 12
Q ss_pred cEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 197 LVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 197 ~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
.+++...+|+.... .+.++|+|+||++|..++.++. ...++++++||+||+|.+.+..++.++...++++.
T Consensus 77 ~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~---r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~ 153 (1490)
T PRK09751 77 NLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA---RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLD 153 (1490)
T ss_pred ceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhh---hhhhccCCEEEEecHHHhcccccccHHHHHHHHHH
Confidence 38888999987643 3579999999999998876432 23589999999999999987777877777776553
Q ss_pred ccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhccc
Q 045757 271 FDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRS 350 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (548)
......
T Consensus 154 --------------------------------------------------------------------------~l~~~~ 159 (1490)
T PRK09751 154 --------------------------------------------------------------------------ALLHTS 159 (1490)
T ss_pred --------------------------------------------------------------------------HhCCCC
Confidence 112346
Q ss_pred ceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchh----------------hHHHHHHHH
Q 045757 351 KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT----------------QVDALIEAV 414 (548)
Q Consensus 351 ~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~l 414 (548)
.|+|++|||+.. .+.+.. ++....+ ...+...... ...+. ..+...... ....++..+
T Consensus 160 ~QrIgLSATI~n-~eevA~-~L~g~~p-v~Iv~~~~~r--~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v 233 (1490)
T PRK09751 160 AQRIGLSATVRS-ASDVAA-FLGGDRP-VTVVNPPAMR--HPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYI 233 (1490)
T ss_pred CeEEEEEeeCCC-HHHHHH-HhcCCCC-EEEECCCCCc--ccceE-EEEecCchhhccccccccccccchhhhhhhhHHH
Confidence 899999999975 333333 3321100 0111100000 00010 000000000 011111111
Q ss_pred H-HHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC---------------------------------CceEEecCCCCH
Q 045757 415 K-ERLEFGAETSRTMVFANTVDAVYAVTKILKTAG---------------------------------IECYCYHKDLSL 460 (548)
Q Consensus 415 ~-~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~ 460 (548)
. ..+.......++||||||+..|+.++..|++.. ..+..|||+|+.
T Consensus 234 ~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 234 ETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 1 011111246799999999999999999997642 125789999999
Q ss_pred HHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC-CCcceEE
Q 045757 461 EERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA-GQYGLVT 524 (548)
Q Consensus 461 ~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~-g~~G~~i 524 (548)
++|..+++.|+ ++.++||||+++++|||++++++||+++.|.+..+|+||+||+||. |..+.++
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999 7779999999999999999999999999999999999999999996 3334455
No 54
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=332.11 Aligned_cols=335 Identities=24% Similarity=0.292 Sum_probs=251.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 045757 90 GLSDRLIRALENSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP 168 (548)
Q Consensus 90 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
.+++.+...++..++..+++.|+.++.... +++|+++++|||+|||+.+++.++..+.+. +.+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------------~~k 78 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------------GGK 78 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------------CCc
Confidence 377888888889999899999999996655 569999999999999999999999999764 689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 169 ~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
++|+||+++|+.|.++.++ .....| +++...+|+.... ..+++|+|+|||++..++.+.. .++.++++|
T Consensus 79 ~vYivPlkALa~Ek~~~~~-~~~~~G---irV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~----~~~~~V~lv 150 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFS-RLEELG---IRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRP----SWIEEVDLV 150 (766)
T ss_pred EEEEeChHHHHHHHHHHhh-hHHhcC---CEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCc----chhhcccEE
Confidence 9999999999999999999 334445 9999999998855 4789999999999987775543 257789999
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||+|.+.+...+..++.++.+.+.
T Consensus 151 ViDEiH~l~d~~RG~~lE~iv~r~~~------------------------------------------------------ 176 (766)
T COG1204 151 VIDEIHLLGDRTRGPVLESIVARMRR------------------------------------------------------ 176 (766)
T ss_pred EEeeeeecCCcccCceehhHHHHHHh------------------------------------------------------
Confidence 99999988877799999998877651
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc-ccceeeecch
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL-KEKWIEVTVD 404 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 404 (548)
.....|++.+|||++ +...++.++-.... ...|-.... ..+.. ...+......
T Consensus 177 ---------------------~~~~~rivgLSATlp-N~~evA~wL~a~~~-~~~~rp~~l---~~~v~~~~~~~~~~~~ 230 (766)
T COG1204 177 ---------------------LNELIRIVGLSATLP-NAEEVADWLNAKLV-ESDWRPVPL---RRGVPYVGAFLGADGK 230 (766)
T ss_pred ---------------------hCcceEEEEEeeecC-CHHHHHHHhCCccc-ccCCCCccc---ccCCccceEEEEecCc
Confidence 122379999999998 33444433322211 111111111 11111 1111111111
Q ss_pred h------hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------------------------------
Q 045757 405 T------QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------------------------------- 447 (548)
Q Consensus 405 ~------~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------- 447 (548)
. ....++..+... ...++.+||||++++.+...++.+.+.
T Consensus 231 ~k~~~~~~~~~~~~~v~~~---~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (766)
T COG1204 231 KKTWPLLIDNLALELVLES---LAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDE 307 (766)
T ss_pred cccccccchHHHHHHHHHH---HhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchH
Confidence 1 122333333332 256899999999999999999999841
Q ss_pred ------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEE----Eec-----CCCCHHHHHHHh
Q 045757 448 ------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVI----QAD-----FATSAVDFLHRV 511 (548)
Q Consensus 448 ------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI----~~~-----~p~s~~~~~Qr~ 511 (548)
...+++||++++.++|..+.+.|+ ++.+|||||.+++.|+|+|.-++|| .|+ .+.+..+++||.
T Consensus 308 ~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~ 387 (766)
T COG1204 308 ELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMA 387 (766)
T ss_pred HHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhcc
Confidence 124789999999999999999999 7789999999999999999766665 345 356789999999
Q ss_pred cccccCCCc--ceEEEEeecCc
Q 045757 512 GRTARAGQY--GLVTSLYTESN 531 (548)
Q Consensus 512 GR~gR~g~~--G~~i~~~~~~~ 531 (548)
|||||-|-. |.++++.+..+
T Consensus 388 GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 388 GRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred CcCCCCCcCCCCcEEEEecCcc
Confidence 999998754 77777774443
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2e-38 Score=304.19 Aligned_cols=338 Identities=22% Similarity=0.251 Sum_probs=264.1
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
....++|++++.+.+.|+..|++.+.|+|..|+.+ +++|+|.+|..+|+||||+...++-+..++..
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~------------ 260 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG------------ 260 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC------------
Confidence 35578899999999999999999999999999965 77999999999999999999999999998875
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChh
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPK 231 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~ 231 (548)
+.+.|+++|.++|++|.++.++.-....| +.+..-.|-.... ..++||+|+||+-+-.++...
T Consensus 261 ----g~KmlfLvPLVALANQKy~dF~~rYs~Lg---lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg 333 (830)
T COG1202 261 ----GKKMLFLVPLVALANQKYEDFKERYSKLG---LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG 333 (830)
T ss_pred ----CCeEEEEehhHHhhcchHHHHHHHhhccc---ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC
Confidence 78999999999999999999998877777 5554444432211 346899999999997777654
Q ss_pred hhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 232 ~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
..+.++..||+||+|++-+...+..+.-++.+++.
T Consensus 334 -----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~---------------------------------------- 368 (830)
T COG1202 334 -----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY---------------------------------------- 368 (830)
T ss_pred -----CcccccceEEeeeeeeccchhcccchhhHHHHHHH----------------------------------------
Confidence 24889999999999999887888888888877652
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN 391 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 391 (548)
+.+..|++++|||.. +...++..+-... ..+...+
T Consensus 369 -----------------------------------l~~~AQ~i~LSATVg-Np~elA~~l~a~l--------V~y~~RP- 403 (830)
T COG1202 369 -----------------------------------LFPGAQFIYLSATVG-NPEELAKKLGAKL--------VLYDERP- 403 (830)
T ss_pred -----------------------------------hCCCCeEEEEEeecC-ChHHHHHHhCCee--------EeecCCC-
Confidence 224689999999986 3344433321110 0111111
Q ss_pred cccccceeeec-chhhHHHHHHHHHHHh---hccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHH
Q 045757 392 PRLKEKWIEVT-VDTQVDALIEAVKERL---EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~---~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 467 (548)
..+..+.+... ...|.+-..+.++... .+....+.||||++|+..|..++..|...|+.+..||++|+..+|..+.
T Consensus 404 VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE 483 (830)
T COG1202 404 VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVE 483 (830)
T ss_pred CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHH
Confidence 22333333333 4555555555554443 2234567899999999999999999999999999999999999999999
Q ss_pred Hhhc-cCCcEEEEeCcccccCCCCCCCEEEEe-----cCCCCHHHHHHHhcccccCCC--cceEEEEeecC
Q 045757 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQA-----DFATSAVDFLHRVGRTARAGQ--YGLVTSLYTES 530 (548)
Q Consensus 468 ~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~-----~~p~s~~~~~Qr~GR~gR~g~--~G~~i~~~~~~ 530 (548)
..|. ++..++|+|.+++.|+|+|.-. ||+- .-+.|+.+|.||.|||||.+- .|++++++.+.
T Consensus 484 ~~F~~q~l~~VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 484 RAFAAQELAAVVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHhcCCcceEeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999 6779999999999999999544 4432 236799999999999999765 49999998875
No 56
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.2e-37 Score=320.47 Aligned_cols=311 Identities=16% Similarity=0.174 Sum_probs=213.8
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..|+++|.++++.++.++++++++|||+|||+++.. +...+... ...++|||+||++|+.|+.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~---------------~~~~vLilvpt~eL~~Q~~~ 176 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN---------------YEGKVLIIVPTTSLVTQMID 176 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc---------------CCCeEEEEECcHHHHHHHHH
Confidence 489999999999999999999999999999998654 23333322 24489999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHH
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~ 264 (548)
.++++..... ..+..+.+|.... .+.+|+|+||+++..... .++.++++||+||||++....+ ..
T Consensus 177 ~l~~~~~~~~---~~~~~i~~g~~~~-~~~~I~VaT~qsl~~~~~-------~~~~~~~~iIvDEaH~~~~~~~----~~ 241 (501)
T PHA02558 177 DFVDYRLFPR---EAMHKIYSGTAKD-TDAPIVVSTWQSAVKQPK-------EWFDQFGMVIVDECHLFTGKSL----TS 241 (501)
T ss_pred HHHHhccccc---cceeEEecCcccC-CCCCEEEeeHHHHhhchh-------hhccccCEEEEEchhcccchhH----HH
Confidence 9998764322 3444555554332 457999999999865431 2367899999999999865433 33
Q ss_pred HHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHH
Q 045757 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVR 344 (548)
Q Consensus 265 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (548)
++..+
T Consensus 242 il~~~--------------------------------------------------------------------------- 246 (501)
T PHA02558 242 IITKL--------------------------------------------------------------------------- 246 (501)
T ss_pred HHHhh---------------------------------------------------------------------------
Confidence 33322
Q ss_pred hhhcccceeEEEeeccCCCccchh--hhhhhhcCCCC---cccccccccc--------cCc--cc--------ccce-ee
Q 045757 345 KNYQRSKQYIFVAATLPINGKKTA--GAVLKQMFPDA---DWISGNYLHF--------HNP--RL--------KEKW-IE 400 (548)
Q Consensus 345 ~~~~~~~q~v~~SAT~~~~~~~~~--~~~l~~~~~~~---~~~~~~~~~~--------~~~--~~--------~~~~-~~ 400 (548)
...++.+++|||+........ ...+....... ..+....... ..+ .. .... ..
T Consensus 247 ---~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 323 (501)
T PHA02558 247 ---DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYI 323 (501)
T ss_pred ---hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHH
Confidence 235788999999863221110 11111100000 0000000000 000 00 0000 00
Q ss_pred ecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEE
Q 045757 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVC 479 (548)
Q Consensus 401 ~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~ 479 (548)
.....+...+.+.+.... ..+.+++|||+++++++.+++.|++.+..+..+||+++.++|..+++.|+ ++..||||
T Consensus 324 ~~~~~Rn~~I~~~~~~~~---~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 324 TSHTKRNKWIANLALKLA---KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred hccHHHHHHHHHHHHHHH---hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 111122222222222221 35678999999999999999999999999999999999999999999999 55589999
Q ss_pred e-CcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEe
Q 045757 480 T-DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLY 527 (548)
Q Consensus 480 T-~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~ 527 (548)
| +++++|+|+|++++||+++++.|...|+||+||++|.+..+....+|
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 8 89999999999999999999999999999999999987765544444
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.9e-37 Score=340.34 Aligned_cols=307 Identities=19% Similarity=0.285 Sum_probs=209.4
Q ss_pred HHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcC
Q 045757 96 IRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP 174 (548)
Q Consensus 96 ~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~P 174 (548)
.+.+++ .|+ .|+++|..+++.++.|+|++++||||+|||. |.++++..+.. .+.++|||+|
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------~g~~alIL~P 131 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------KGKKSYIIFP 131 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------cCCeEEEEec
Confidence 344544 477 8999999999999999999999999999996 55566554432 2678999999
Q ss_pred cHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------------cCCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 175 NVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------------PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 175 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
|++|+.|+.+.++.+....+ +.+..+.|+... ..++++|+|+||++|.+++.. ....++
T Consensus 132 TreLa~Qi~~~l~~l~~~~~---~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~------l~~~~~ 202 (1176)
T PRK09401 132 TRLLVEQVVEKLEKFGEKVG---CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE------LPKKKF 202 (1176)
T ss_pred cHHHHHHHHHHHHHHhhhcC---ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh------cccccc
Confidence 99999999999999987766 666666665432 135699999999999887641 124569
Q ss_pred eEEEEecchhhccC-----------ChH-HHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhh
Q 045757 243 KYVVFDEADMLLCG-----------SFQ-NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310 (548)
Q Consensus 243 ~~vV~DEah~l~~~-----------~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (548)
+++|+||||+++++ +|. ..+..++..++.... ..........+.
T Consensus 203 ~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~---------------------~~~~~~~i~~l~--- 258 (1176)
T PRK09401 203 DFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRK---------------------YEEIYEKIRELE--- 258 (1176)
T ss_pred CEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccc---------------------cchhhhHHHHHH---
Confidence 99999999999863 443 455666555542000 000000000000
Q ss_pred cccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccccc
Q 045757 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH 390 (548)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (548)
..+...-....|.+++|||+++..... ..+.... .+........
T Consensus 259 ------------------------------~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll----~~~v~~~~~~ 302 (1176)
T PRK09401 259 ------------------------------EKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELL----GFEVGSPVFY 302 (1176)
T ss_pred ------------------------------HhhhhcccCCceEEEEeCCCCccchHH--HHhhccc----eEEecCcccc
Confidence 000000012579999999997542211 1111111 1111111122
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhH---HHHHHHHHHHcCCceEEecCCCCHHHHHHHH
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDA---VYAVTKILKTAGIECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 467 (548)
..++.+.++... .+...+.+.+.. .+.++||||++++. ++.+++.|++.|+.+..+||+| .+.+
T Consensus 303 ~rnI~~~yi~~~--~k~~~L~~ll~~------l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l 369 (1176)
T PRK09401 303 LRNIVDSYIVDE--DSVEKLVELVKR------LGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKF 369 (1176)
T ss_pred cCCceEEEEEcc--cHHHHHHHHHHh------cCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHH
Confidence 234555554443 455555555543 24589999999877 9999999999999999999999 2235
Q ss_pred Hhhc-cCCcEEEE----eCcccccCCCCC-CCEEEEecCCC
Q 045757 468 VNFQ-EKGGVFVC----TDAAARGIDIPN-VSHVIQADFAT 502 (548)
Q Consensus 468 ~~f~-~~~~vLv~----T~~~~~GiDip~-v~~VI~~~~p~ 502 (548)
++|+ |+.+|||| |++++||||+|+ +++|||||.|.
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 77899999 689999999999 89999999996
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-37 Score=329.11 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=222.5
Q ss_pred HhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH-hh
Q 045757 112 AASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA-LS 190 (548)
Q Consensus 112 ~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~-~~ 190 (548)
.+.+..+.++++++++|+||||||.+|.+++++... .+.+++|+.|+++++.|+.+.+.+ +.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------~~~~ilvlqPrR~aA~qiA~rva~~~~ 70 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------IGGKIIMLEPRRLAARSAAQRLASQLG 70 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------cCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 345556667889999999999999999999988752 246899999999999999988754 43
Q ss_pred cccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecch-hhccCChHHH-HHHHHhh
Q 045757 191 ADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQNQ-VIRLINM 268 (548)
Q Consensus 191 ~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah-~l~~~~~~~~-~~~i~~~ 268 (548)
...| ..+.....+......+.+|+|+||+.|.+.+... ..++++++|||||+| +.++.++.-. +..+...
T Consensus 71 ~~~g---~~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d-----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~ 142 (819)
T TIGR01970 71 EAVG---QTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDD-----PELDGVGALIFDEFHERSLDADLGLALALDVQSS 142 (819)
T ss_pred CCcC---cEEEEEEccccccCCCCcEEEECCcHHHHHHhhC-----cccccCCEEEEeccchhhhccchHHHHHHHHHHh
Confidence 3333 4455555555555567899999999999887542 248899999999999 5666655432 2223222
Q ss_pred hhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhc
Q 045757 269 FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQ 348 (548)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (548)
+ .
T Consensus 143 l------------------------------------------------------------------------------r 144 (819)
T TIGR01970 143 L------------------------------------------------------------------------------R 144 (819)
T ss_pred c------------------------------------------------------------------------------C
Confidence 2 2
Q ss_pred ccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHH-HHHHHHHHHhhccCCCCcE
Q 045757 349 RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD-ALIEAVKERLEFGAETSRT 427 (548)
Q Consensus 349 ~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~ 427 (548)
...|+++||||+.... .. .++.....+..... ...+...+.......++. .+...+...+. ...+.+
T Consensus 145 ~dlqlIlmSATl~~~~---l~----~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~--~~~g~i 212 (819)
T TIGR01970 145 EDLKILAMSATLDGER---LS----SLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALA--SETGSI 212 (819)
T ss_pred CCceEEEEeCCCCHHH---HH----HHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHH--hcCCcE
Confidence 4689999999997421 22 22222222211110 011333333333222222 12223333222 235789
Q ss_pred EEEeCChhHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC-
Q 045757 428 MVFANTVDAVYAVTKILKT---AGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT- 502 (548)
Q Consensus 428 lVF~~s~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~- 502 (548)
|||+++..+++.+++.|.+ .++.+..+||+|+.++|.++++.|+ ++.+|||||+++++|||||+|++||+++.++
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 9999999999999999987 4788999999999999999999999 5679999999999999999999999999874
Q ss_pred -----------------CHHHHHHHhcccccCCCcceEEEEeecCchhHH
Q 045757 503 -----------------SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLV 535 (548)
Q Consensus 503 -----------------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~ 535 (548)
|..++.||+||+||. ++|.||.+|++.+...+
T Consensus 293 ~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l 341 (819)
T TIGR01970 293 ARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL 341 (819)
T ss_pred cccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh
Confidence 456799999999999 89999999998765443
No 59
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-37 Score=295.60 Aligned_cols=385 Identities=21% Similarity=0.260 Sum_probs=238.6
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
-.++.+|.......+.+ |++++.|||.|||+.+++-+...+... ++++|+++||+.|+.|..+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----------------~~kvlfLAPTKPLV~Qh~~ 76 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----------------GGKVLFLAPTKPLVLQHAE 76 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----------------CCeEEEecCCchHHHHHHH
Confidence 36899999999887755 999999999999999988888877654 3489999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC-h
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS-F 258 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~-~ 258 (548)
.+.+..... .-.++.++|..... +...+|+|+||+.+.+.+... ..++.++.++||||||+-.... +
T Consensus 77 ~~~~v~~ip---~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G----rid~~dv~~lifDEAHRAvGnyAY 149 (542)
T COG1111 77 FCRKVTGIP---EDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG----RIDLDDVSLLIFDEAHRAVGNYAY 149 (542)
T ss_pred HHHHHhCCC---hhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC----ccChHHceEEEechhhhccCcchH
Confidence 999887543 36888899987654 567899999999997776544 3457889999999999864332 3
Q ss_pred HHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCccc--
Q 045757 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIK-- 336 (548)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 336 (548)
.......+..-. .+..+.....+..+.+...+......-...... -+.-.+.........+.
T Consensus 150 v~Va~~y~~~~k---------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevr-TE~d~DV~~Yv~~~kve~i 213 (542)
T COG1111 150 VFVAKEYLRSAK---------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVR-TEEDPDVRPYVKKIKVEWI 213 (542)
T ss_pred HHHHHHHHHhcc---------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEe-cCCCccHHHhhccceeEEE
Confidence 333333332211 111111122222222222222211111111111 11111222211111111
Q ss_pred ----chhhHHHHhhhc--------ccce-eEEEeeccCCCccchhhhh--------------------------------
Q 045757 337 ----KKDWRRVRKNYQ--------RSKQ-YIFVAATLPINGKKTAGAV-------------------------------- 371 (548)
Q Consensus 337 ----~~~~~~~~~~~~--------~~~q-~v~~SAT~~~~~~~~~~~~-------------------------------- 371 (548)
...+.++++.+. .-.. -+.-+.+. ...+.+....
T Consensus 214 kV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~-~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~e 292 (542)
T COG1111 214 KVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP-VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALE 292 (542)
T ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc-ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 0000 01111110 0000000000
Q ss_pred -------------hhhcCCCCcccccc---cccccCcccc-------cceeeecchhhHHHHHHHHHHHhhccCCCCcEE
Q 045757 372 -------------LKQMFPDADWISGN---YLHFHNPRLK-------EKWIEVTVDTQVDALIEAVKERLEFGAETSRTM 428 (548)
Q Consensus 372 -------------l~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l 428 (548)
+......... ... ......+... ..........|+..+.+.+.+.++.. .+.++|
T Consensus 293 lletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~-~~~RvI 370 (542)
T COG1111 293 LLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN-GDSRVI 370 (542)
T ss_pred HHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC-CCceEE
Confidence 0000000000 000 0000000000 00111223456777777777776443 458999
Q ss_pred EEeCChhHHHHHHHHHHHcCCceE-E--------ecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEe
Q 045757 429 VFANTVDAVYAVTKILKTAGIECY-C--------YHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 429 VF~~s~~~~~~l~~~L~~~~~~~~-~--------~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
||++.+++++.+.+.|.+.+..+. . ...||++.++.++++.|+ |..+|||||+++++|+|+|.+|.||+|
T Consensus 371 VFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifY 450 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFY 450 (542)
T ss_pred EEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEe
Confidence 999999999999999999988774 2 236799999999999999 778999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 499 ~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
++..|...++||.||+||. +.|.+++++++..++
T Consensus 451 EpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 451 EPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred cCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 9999999999999999997 899999999998544
No 60
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=9.5e-38 Score=285.26 Aligned_cols=351 Identities=21% Similarity=0.238 Sum_probs=265.3
Q ss_pred CCccc--ccCCCHHHHHHHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 83 NVTWK--SLGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 83 ~~~~~--~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
+..|+ +++++......|+ .+..+.++|.|..+|+..+.|++.++.+|||.||++||.||++..
T Consensus 68 paawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------------- 133 (695)
T KOG0353|consen 68 PAAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------------- 133 (695)
T ss_pred ccccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------------
Confidence 33454 4567778777775 458889999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------------CCCCcEEEeChHHHHhh
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------------IGKPDVIVSTPAALLNN 227 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~Ilv~Tp~~l~~~ 227 (548)
.+.+||+||.++|++++.-.+++++ +....+....... .....+++.||+++...
T Consensus 134 ------dg~alvi~plislmedqil~lkqlg-------i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaks 200 (695)
T KOG0353|consen 134 ------DGFALVICPLISLMEDQILQLKQLG-------IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKS 200 (695)
T ss_pred ------CCceEeechhHHHHHHHHHHHHHhC-------cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHH
Confidence 5789999999999999999999886 4444444333221 24578999999998432
Q ss_pred c-ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhh
Q 045757 228 I-DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENL 306 (548)
Q Consensus 228 l-~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (548)
- .-.+.........+++|-+||+|+..+|++ .++++++.+..+....
T Consensus 201 k~~mnkleka~~~~~~~~iaidevhccsqwgh---------dfr~dy~~l~ilkrqf----------------------- 248 (695)
T KOG0353|consen 201 KKFMNKLEKALEAGFFKLIAIDEVHCCSQWGH---------DFRPDYKALGILKRQF----------------------- 248 (695)
T ss_pred HHHHHHHHHHhhcceeEEEeecceeehhhhCc---------ccCcchHHHHHHHHhC-----------------------
Confidence 1 001111122356789999999999988875 3444444443332211
Q ss_pred hhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccc
Q 045757 307 QDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNY 386 (548)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~ 386 (548)
....+++++||.+.+.-..+...+.-. ....+.
T Consensus 249 ------------------------------------------~~~~iigltatatn~vl~d~k~il~ie--~~~tf~--- 281 (695)
T KOG0353|consen 249 ------------------------------------------KGAPIIGLTATATNHVLDDAKDILCIE--AAFTFR--- 281 (695)
T ss_pred ------------------------------------------CCCceeeeehhhhcchhhHHHHHHhHH--hhheee---
Confidence 356688999998876655555544310 011111
Q ss_pred ccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHH
Q 045757 387 LHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKT 466 (548)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 466 (548)
..+..+++. +.........+.+++.+.+.+.-...++..||||-+++.|+.++..|++.|+....||+.|.+++|...
T Consensus 282 a~fnr~nl~--yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 282 AGFNRPNLK--YEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred cccCCCCce--eEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 112223333 223334445667777777777666788999999999999999999999999999999999999999999
Q ss_pred HHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHH------------------------------------
Q 045757 467 LVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLH------------------------------------ 509 (548)
Q Consensus 467 ~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Q------------------------------------ 509 (548)
-+.|. ++..|+|+|-++++|||-|+|++|||+.+|.|++.|.|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 99998 88899999999999999999999999999999999999
Q ss_pred -------HhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 510 -------RVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 510 -------r~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
..||+||.|.+..||++|.-.|......+-+.
T Consensus 440 favfsekesgragrd~~~a~cilyy~~~difk~ssmv~~ 478 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQM 478 (695)
T ss_pred eeeecchhccccccCCCcccEEEEechHHHHhHHHHHHH
Confidence 78999999999999999999887655554433
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=331.00 Aligned_cols=347 Identities=25% Similarity=0.322 Sum_probs=267.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
....+..++.+.|+..|+.||.+|+..+.+|+|++|+.+||||||.+|++||++.++.. +..++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~---------------~~a~AL 119 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD---------------PSARAL 119 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC---------------cCccEE
Confidence 44456788888899999999999999999999999999999999999999999999876 456899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccccCeeE
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKY 244 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~ 244 (548)
+|.||++|++++.+.+.++....+. .+.+..+.|+.... .+.++|+++||+||..++......+...+.++++
T Consensus 120 ~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~ 198 (851)
T COG1205 120 LLYPTNALANDQAERLRELISDLPG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKY 198 (851)
T ss_pred EEechhhhHhhHHHHHHHHHHhCCC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcE
Confidence 9999999999999999999988775 47888888887643 5789999999999988666665666667888999
Q ss_pred EEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcc
Q 045757 245 VVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVE 324 (548)
Q Consensus 245 vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (548)
||+||+|.+ .+.|+..+..+++++.
T Consensus 199 lVvDElHtY-rGv~GS~vA~llRRL~------------------------------------------------------ 223 (851)
T COG1205 199 LVVDELHTY-RGVQGSEVALLLRRLL------------------------------------------------------ 223 (851)
T ss_pred EEEecceec-cccchhHHHHHHHHHH------------------------------------------------------
Confidence 999999954 6778888888887763
Q ss_pred ccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccc-----cccccCccccccee
Q 045757 325 GLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN-----YLHFHNPRLKEKWI 399 (548)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 399 (548)
+....+....|+++.|||+. +....+..+.+..+......... ......+.......
T Consensus 224 -----------------~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 224 -----------------RRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred -----------------HHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 23334446799999999996 44455555554433332111110 00111110000000
Q ss_pred eecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHH----HHHHHcC----CceEEecCCCCHHHHHHHHHhhc
Q 045757 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVT----KILKTAG----IECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 400 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
. ...+............+ ..+-++|+|+.++..++.+. ..+...+ ..+..+++++..++|.+++..|+
T Consensus 286 ~-~r~s~~~~~~~~~~~~~---~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~ 361 (851)
T COG1205 286 S-IRRSALAELATLAALLV---RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK 361 (851)
T ss_pred h-cccchHHHHHHHHHHHH---HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh
Confidence 0 01122222222222221 35789999999999999997 4444445 56899999999999999999999
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCC-CHHHHHHHhcccccCCCcceEEEEeecC
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-SAVDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
++..++++|.+++-|+|+.+++.||..+.|. +..++.||.||+||.++.+..+.++..+
T Consensus 362 ~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 362 EGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 7789999999999999999999999999999 9999999999999999888888887744
No 62
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-38 Score=331.17 Aligned_cols=336 Identities=21% Similarity=0.250 Sum_probs=259.1
Q ss_pred HHHHHH-HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEE
Q 045757 94 RLIRAL-ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVL 172 (548)
Q Consensus 94 ~l~~~l-~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil 172 (548)
++...+ ..+|...+++-|.++|..++.|+++++.+|||+||++||.||++-. ++..|||
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------------~gitvVI 310 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------------------GGVTVVI 310 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------------------CCceEEe
Confidence 344444 5679999999999999999999999999999999999999998753 4689999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CC--CCcEEEeChHHHHhhcChhhhhcccccc
Q 045757 173 CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IG--KPDVIVSTPAALLNNIDPKRRRRMEFVR 240 (548)
Q Consensus 173 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~--~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 240 (548)
.|.++|++++...+.... ++...+.++.... .+ ..+|++.|||++...-.-.. ....+.
T Consensus 311 SPL~SLm~DQv~~L~~~~-------I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~--~~~~L~ 381 (941)
T KOG0351|consen 311 SPLISLMQDQVTHLSKKG-------IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLE--SLADLY 381 (941)
T ss_pred ccHHHHHHHHHHhhhhcC-------cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhh--HHHhcc
Confidence 999999999988775544 8888888887763 23 68999999999854432211 112234
Q ss_pred C---eeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 241 G---VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 241 ~---~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
. +.++|+||||++.+|++ .+|++++.+..+..
T Consensus 382 ~~~~lal~vIDEAHCVSqWgH---------dFRp~Yk~l~~l~~------------------------------------ 416 (941)
T KOG0351|consen 382 ARGLLALFVIDEAHCVSQWGH---------DFRPSYKRLGLLRI------------------------------------ 416 (941)
T ss_pred CCCeeEEEEecHHHHhhhhcc---------cccHHHHHHHHHHh------------------------------------
Confidence 4 89999999999998873 44554444432221
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
.+ ....++.++||.+...+..+...+.-..+. ++. .....+++...
T Consensus 417 ----------------------------~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~--~~~---~sfnR~NL~ye 462 (941)
T KOG0351|consen 417 ----------------------------RF-PGVPFIALTATATERVREDVIRSLGLRNPE--LFK---SSFNRPNLKYE 462 (941)
T ss_pred ----------------------------hC-CCCCeEEeehhccHHHHHHHHHHhCCCCcc--eec---ccCCCCCceEE
Confidence 11 236789999999877766666555432211 111 11222333322
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
+...........+...+.. ..+...+||||.++.+|+.++..|.+.++.+.+||++|+..+|..+...|- ++.+|
T Consensus 463 V~~k~~~~~~~~~~~~~~~----~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~V 538 (941)
T KOG0351|consen 463 VSPKTDKDALLDILEESKL----RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRV 538 (941)
T ss_pred EEeccCccchHHHHHHhhh----cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeE
Confidence 2222222333333444433 367889999999999999999999999999999999999999999999998 88999
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
+|||-++++|||.|+|+.||||++|.|.+.|.|.+|||||.|....|++||...|...++.+-..
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999998888776654
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.2e-37 Score=318.92 Aligned_cols=319 Identities=17% Similarity=0.151 Sum_probs=216.9
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHH---------hHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHS---------YLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~---------~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
..+|.++++.+++|++++++|+||||||.+ |++|.+..+..- .+......++|++||++|
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~-----------~~~~~~~~ilvt~PrreL 234 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI-----------DPNFIERPIVLSLPRVAL 234 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc-----------ccccCCcEEEEECcHHHH
Confidence 347999999999999999999999999987 333333332110 011235689999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEeCCCCc-----cCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGW-----PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 179 ~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
+.|+...+.+...........+...+|+... .....+|+|+|++... ..+.++++||+||||.+
T Consensus 235 a~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-----------~~L~~v~~VVIDEaHEr 303 (675)
T PHA02653 235 VRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-----------NKLFDYGTVIIDEVHEH 303 (675)
T ss_pred HHHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-----------cccccCCEEEccccccC
Confidence 9999988877654322122567777887642 2235789999975311 13678999999999987
Q ss_pred ccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccC
Q 045757 254 LCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSG 333 (548)
Q Consensus 254 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (548)
...+ ..+..++..+.
T Consensus 304 ~~~~--DllL~llk~~~--------------------------------------------------------------- 318 (675)
T PHA02653 304 DQIG--DIIIAVARKHI--------------------------------------------------------------- 318 (675)
T ss_pred ccch--hHHHHHHHHhh---------------------------------------------------------------
Confidence 5443 23333332211
Q ss_pred cccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc---------h
Q 045757 334 SIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV---------D 404 (548)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 404 (548)
...+|+++||||++.+.+.+ ..++. ....+..... ....+.+.+..... +
T Consensus 319 --------------~~~rq~ILmSATl~~dv~~l-~~~~~----~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~ 377 (675)
T PHA02653 319 --------------DKIRSLFLMTATLEDDRDRI-KEFFP----NPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIE 377 (675)
T ss_pred --------------hhcCEEEEEccCCcHhHHHH-HHHhc----CCcEEEeCCC--cCCCeEEEEeecCcccccchhhhH
Confidence 12358999999998554433 23332 2222222110 01122222221110 1
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhh-c-cCCcEEEEe
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNF-Q-EKGGVFVCT 480 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~-~~~~vLv~T 480 (548)
.....+...+.... ...++.+|||++++..++.+++.|.+. ++.+..+||+|++. .+.+++| + ++.+|||||
T Consensus 378 ~~k~~~l~~L~~~~--~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVAT 453 (675)
T PHA02653 378 EEKKNIVTALKKYT--PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIIST 453 (675)
T ss_pred HHHHHHHHHHHHhh--cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEecc
Confidence 11112222222211 123578999999999999999999987 68999999999975 4566777 5 667999999
Q ss_pred CcccccCCCCCCCEEEEec---CCC---------CHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 481 DAAARGIDIPNVSHVIQAD---FAT---------SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 481 ~~~~~GiDip~v~~VI~~~---~p~---------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
+++++|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.||++++...+.++.
T Consensus 454 dIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 454 PYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred ChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 9999999999999999998 554 889999999999999 899999999998865555544
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.5e-37 Score=312.16 Aligned_cols=390 Identities=22% Similarity=0.244 Sum_probs=252.5
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
+|+ .|+++|..+++.++.|+ |.+|.||+|||++|.+|++..... +..++|++||++||.|
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------------G~~v~VvTptreLA~q 159 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------------GLPVHVITVNDYLAER 159 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------------CCeEEEEcCcHHHHHH
Confidence 476 79999999999999998 999999999999999999987643 5789999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhh---------------------c
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRR---------------------R 235 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~---------------------~ 235 (548)
.++++..+....| +++.+++|+.... ..++||+|+|...+ .+.|..+-.. .
T Consensus 160 dae~~~~l~~~lG---lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (656)
T PRK12898 160 DAELMRPLYEALG---LTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRST 236 (656)
T ss_pred HHHHHHHHHhhcC---CEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchh
Confidence 9999999998888 8999999986532 35799999999877 4555333111 0
Q ss_pred cccccCeeEEEEecchhhc-cC-----------------ChHHHHHHHHhhhhccHHHHhhhcccCcccccccC------
Q 045757 236 MEFVRGVKYVVFDEADMLL-CG-----------------SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMD------ 291 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~-~~-----------------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~------ 291 (548)
....+.+.+.|+||+|.++ +. .....+..+...+..... +........+.+.
T Consensus 237 ~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~----y~~d~~~~~v~lt~~g~~~ 312 (656)
T PRK12898 237 QLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGED----YTIDAAEKRIELTEAGRAR 312 (656)
T ss_pred hhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCc----eEEECCCCeEEEcHHHHHH
Confidence 1113568899999999764 11 122233333333322100 0000000000000
Q ss_pred ------C-CCCCCCCchhhhhh------------hhhhcccCCCCC-----------CCC----------Cccccccccc
Q 045757 292 ------N-SSLTQPDLQDEENL------------QDEYISDEGNFE-----------GDS----------DVEGLTEETK 331 (548)
Q Consensus 292 ------~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~ 331 (548)
. ..+........+.+ ...|+-.+++.. +.. .+++++...+
T Consensus 313 ~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e 392 (656)
T PRK12898 313 IAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDP 392 (656)
T ss_pred HHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcC
Confidence 0 00000000000000 001111111100 000 1122222222
Q ss_pred cCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHH
Q 045757 332 SGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALI 411 (548)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 411 (548)
+.....-.++.+...| .+..+||+|..... ..+...+.-++..+...... .....+.++.+....|...+.
T Consensus 393 ~~t~a~It~q~~Fr~Y---~kl~GmTGTa~~~~----~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~ 463 (656)
T PRK12898 393 RETLARITYQRFFRRY---LRLAGMTGTAREVA----GELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVA 463 (656)
T ss_pred ceeeeeehHHHHHHhh---HHHhcccCcChHHH----HHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHH
Confidence 2222233444444444 37799999997432 22322222233333222211 112333456666777888888
Q ss_pred HHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCC
Q 045757 412 EAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIP 490 (548)
Q Consensus 412 ~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip 490 (548)
+.+.... ..+.++||||+|+..++.+++.|.+.|+.+..+||++. +|+..+..|. ++..|+|||++++||+||+
T Consensus 464 ~~i~~~~---~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~ 538 (656)
T PRK12898 464 ARVRELH---AQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIK 538 (656)
T ss_pred HHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcC
Confidence 8776642 34578999999999999999999999999999999865 4555556666 3458999999999999999
Q ss_pred ---CCC-----EEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 491 ---NVS-----HVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 491 ---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
+|. +||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 539 l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 539 LEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 666 999999999999999999999999999999999998663
No 65
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-38 Score=289.90 Aligned_cols=342 Identities=19% Similarity=0.247 Sum_probs=244.4
Q ss_pred HHHHHHHH-CCCCCC-cHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 94 RLIRALEN-SGFGRP-SIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 94 ~l~~~l~~-~~~~~~-~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
.+.++|++ +|+..+ ++.|.+|+..+..+ +|+.|+||||+||+|||.||.+-. ++..+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------------~gITI 65 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------------GGITI 65 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------------CCeEE
Confidence 34566654 366554 89999999888766 799999999999999999998753 46899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------------cCCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------------PIGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
|+.|..+|.+++.+.+..+- +++..+.+.... .+....+++-|||+........-......
T Consensus 66 V~SPLiALIkDQiDHL~~LK-------Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~ 138 (641)
T KOG0352|consen 66 VISPLIALIKDQIDHLKRLK-------VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN 138 (641)
T ss_pred EehHHHHHHHHHHHHHHhcC-------CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh
Confidence 99999999999999998874 555555444221 13456799999998643322221111222
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
-..+.++|+||||++.+|++ .+++++-.+..+
T Consensus 139 r~~L~Y~vVDEAHCVSQWGH---------DFRPDYL~LG~L--------------------------------------- 170 (641)
T KOG0352|consen 139 RDVLRYIVVDEAHCVSQWGH---------DFRPDYLTLGSL--------------------------------------- 170 (641)
T ss_pred hceeeeEEechhhhHhhhcc---------ccCcchhhhhhH---------------------------------------
Confidence 34589999999999999985 344443333222
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
++.+ .....+.++||.....++.+...+.--.+...+-...+.. ++....
T Consensus 171 -------------------------RS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~----NLFYD~ 220 (641)
T KOG0352|consen 171 -------------------------RSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD----NLFYDN 220 (641)
T ss_pred -------------------------HhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh----hhhHHH
Confidence 2222 3466788899988776655544433222221111111000 000000
Q ss_pred -eeecchhhHHHHHHHHHHHhh--------ccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHh
Q 045757 399 -IEVTVDTQVDALIEAVKERLE--------FGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469 (548)
Q Consensus 399 -~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 469 (548)
..-.....+..|.++....+. .....+-.||||.|++.|++++-.|...|+++..||+++...||.++.+.
T Consensus 221 ~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~ 300 (641)
T KOG0352|consen 221 HMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEK 300 (641)
T ss_pred HHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHH
Confidence 000111223344444444332 11234568999999999999999999999999999999999999999999
Q ss_pred hc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHH
Q 045757 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRR 540 (548)
Q Consensus 470 f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~ 540 (548)
|- ++..||++|..+++|||-|+|++|||.+.|.|...|.|..||+||.|....|-++|...|+..++.|-+
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 97 788999999999999999999999999999999999999999999999999999999999988877653
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5e-37 Score=326.98 Aligned_cols=305 Identities=19% Similarity=0.266 Sum_probs=220.2
Q ss_pred hhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH-hhc
Q 045757 113 ASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA-LSA 191 (548)
Q Consensus 113 ~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~-~~~ 191 (548)
+.+..+.++++++++|+||||||++|.+++++... ..++++|+.|+++++.|+.+.+.+ +..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------------~~~~ilvlqPrR~aA~qia~rva~~l~~ 74 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------------INGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------------cCCeEEEECChHHHHHHHHHHHHHHhCc
Confidence 44455566889999999999999999999887531 135899999999999999988754 433
Q ss_pred ccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh-hccCChH-HHHHHHHhhh
Q 045757 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM-LLCGSFQ-NQVIRLINMF 269 (548)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~-l~~~~~~-~~~~~i~~~l 269 (548)
..| ..+....++........+|+|+||+.|.+.+... ..++++++|||||+|. .++..+. ..+..++..+
T Consensus 75 ~~g---~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d-----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l 146 (812)
T PRK11664 75 KPG---ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRD-----PELSGVGLVILDEFHERSLQADLALALLLDVQQGL 146 (812)
T ss_pred ccC---ceEEEEecCccccCCCCcEEEEChhHHHHHHhhC-----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC
Confidence 334 5667777776666667899999999999887642 2488999999999995 3333321 1122222222
Q ss_pred hccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcc
Q 045757 270 RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR 349 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (548)
..
T Consensus 147 ------------------------------------------------------------------------------r~ 148 (812)
T PRK11664 147 ------------------------------------------------------------------------------RD 148 (812)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 24
Q ss_pred cceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHH-HHHHHHHHHhhccCCCCcEE
Q 045757 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVD-ALIEAVKERLEFGAETSRTM 428 (548)
Q Consensus 350 ~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~l 428 (548)
..|+++||||++.. . +..++.....+..... ...+.+.+.......+.. .+...+...+. ...+.+|
T Consensus 149 ~lqlilmSATl~~~---~----l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~--~~~g~iL 216 (812)
T PRK11664 149 DLKLLIMSATLDND---R----LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLR--QESGSLL 216 (812)
T ss_pred cceEEEEecCCCHH---H----HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHH--hCCCCEE
Confidence 68999999999742 1 1223322222211111 011333333333333332 22222333322 2368999
Q ss_pred EEeCChhHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC--
Q 045757 429 VFANTVDAVYAVTKILKT---AGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-- 502 (548)
Q Consensus 429 VF~~s~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-- 502 (548)
||+++..+++.+++.|.+ .++.+..+||+|+.++|.++++.|+ ++.+|||||+++++|||||+|++||+++.++
T Consensus 217 VFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 217 LFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred EEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 999999999999999997 5788999999999999999999998 6679999999999999999999999988764
Q ss_pred ----------------CHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 503 ----------------SAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 503 ----------------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
|..+|.||+||+||. .+|.||.+|++.+..
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 456899999999998 699999999987654
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-37 Score=285.08 Aligned_cols=283 Identities=24% Similarity=0.429 Sum_probs=208.7
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------cCCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------PIGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++.+.++|+-|+++|++|..+.++++-.....|.++...+.||.-. ..++.+|+|+||+++.+.+....
T Consensus 282 ~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--- 358 (725)
T KOG0349|consen 282 PAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--- 358 (725)
T ss_pred cCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc---
Confidence 335667899999999999999999999988888887887777776443 25789999999999999986543
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+..++++|+||+|.++..++...+.++...++...
T Consensus 359 -~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~t------------------------------------------ 395 (725)
T KOG0349|consen 359 -VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT------------------------------------------ 395 (725)
T ss_pred -eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhh------------------------------------------
Confidence 4578899999999999999999998888877665110
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCc-cchhhhhhhhcCCCCccccccccccc----
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPING-KKTAGAVLKQMFPDADWISGNYLHFH---- 390 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~---- 390 (548)
.-....|.+..|||+.... +++...++. -+.|+........
T Consensus 396 ------------------------------sdg~rlq~~vCsatlh~feVkk~~ervmh----fptwVdLkgeD~vpetv 441 (725)
T KOG0349|consen 396 ------------------------------SDGFRLQSPVCSATLHIFEVKKVGERVMH----FPTWVDLKGEDLVPETV 441 (725)
T ss_pred ------------------------------cCCcccccceeeeEEeEEEeeehhhhhcc----CceeEecccccccchhh
Confidence 0013478899999986433 222222211 0111111000000
Q ss_pred -------Ccccccce--------------------eeecch--h------hHHHHHHHHHHHhhccCCCCcEEEEeCChh
Q 045757 391 -------NPRLKEKW--------------------IEVTVD--T------QVDALIEAVKERLEFGAETSRTMVFANTVD 435 (548)
Q Consensus 391 -------~~~~~~~~--------------------~~~~~~--~------~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~ 435 (548)
.+.....| ...+.+ + +-+..+..++. ..+.++||||.++.
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-----h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-----HAMDKAIIFCRTKQ 516 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-----hccCceEEEEeccc
Confidence 00000000 000000 0 11112222332 35679999999999
Q ss_pred HHHHHHHHHHHcC---CceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHh
Q 045757 436 AVYAVTKILKTAG---IECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRV 511 (548)
Q Consensus 436 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~ 511 (548)
.|..+.+++.+.| +.|.++||+..+.||.+.++.|+ .+.++||||++++||+||.++-++||..+|.+...|+||+
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 9999999998875 68999999999999999999999 7789999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeec
Q 045757 512 GRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 512 GR~gR~g~~G~~i~~~~~ 529 (548)
||+||+.+.|.+|+++..
T Consensus 597 grvgraermglaislvat 614 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVAT 614 (725)
T ss_pred hccchhhhcceeEEEeec
Confidence 999999999999998764
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.4e-36 Score=311.02 Aligned_cols=393 Identities=20% Similarity=0.232 Sum_probs=253.0
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|+++|..+.+.+.+|+ +++|.||+|||+++.+|++...+. +..++|++||++||.
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------------G~~v~VvTpt~~LA~ 133 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----------------GKGVHLITVNDYLAK 133 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----------------CCCeEEEeCCHHHHH
Confidence 3576 89999999999888876 999999999999999999866643 578999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~ 252 (548)
|.++++..+....| +++.++.|+.... ..+++|+|+||+.+ .+.+...-. .....++.+.++|+||||.
T Consensus 134 qd~e~~~~l~~~lG---l~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDs 210 (790)
T PRK09200 134 RDAEEMGQVYEFLG---LTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDS 210 (790)
T ss_pred HHHHHHHHHHhhcC---CeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccc
Confidence 99999999999988 9999999987621 35699999999988 444432211 1112367899999999998
Q ss_pred hc-c---------------CChHHHHHHHHhhhhccHHHH-------hhhcccCccccccc-CCCCCCCCCchhh-h---
Q 045757 253 LL-C---------------GSFQNQVIRLINMFRFDEKQL-------SRMNESGVEKPLEM-DNSSLTQPDLQDE-E--- 304 (548)
Q Consensus 253 l~-~---------------~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--- 304 (548)
++ + ......+..+...+....... ..+........... ....+........ .
T Consensus 211 iLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~ 290 (790)
T PRK09200 211 ILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHII 290 (790)
T ss_pred ceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHH
Confidence 74 1 122333334444332110000 00000000000000 0000000000000 0
Q ss_pred -hhhh--------hhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccceeE
Q 045757 305 -NLQD--------EYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354 (548)
Q Consensus 305 -~~~~--------~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v 354 (548)
.+.. .|+-..+... +.. .+++++...++.....-.++.+...| ..+.
T Consensus 291 ~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y---~kl~ 367 (790)
T PRK09200 291 LALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMF---PKLS 367 (790)
T ss_pred HHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHh---HHHh
Confidence 0000 0111111000 000 11222222222222233344444444 3588
Q ss_pred EEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc---cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 045757 355 FVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK---EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFA 431 (548)
Q Consensus 355 ~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~ 431 (548)
+||.|..... ..+.+-|.-....++ .+.+... ...+......|...+.+.+.... ..+.++||||
T Consensus 368 GmTGTa~t~~----~e~~~~Y~l~v~~IP-----t~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~---~~~~pvLIf~ 435 (790)
T PRK09200 368 GMTGTAKTEE----KEFFEVYNMEVVQIP-----TNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH---ETGRPVLIGT 435 (790)
T ss_pred ccCCCChHHH----HHHHHHhCCcEEECC-----CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH---hcCCCEEEEe
Confidence 9999974222 222222211222221 1112111 22345566778888888776532 4578999999
Q ss_pred CChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCC---CCCC-----EEEEecCCCC
Q 045757 432 NTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDI---PNVS-----HVIQADFATS 503 (548)
Q Consensus 432 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDi---p~v~-----~VI~~~~p~s 503 (548)
+|+..++.++..|.+.|+.+..+||++...++..+...++. ..|+|||++++||+|+ |+|. +||+++.|.|
T Consensus 436 ~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~-g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s 514 (790)
T PRK09200 436 GSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK-GAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMES 514 (790)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC-CeEEEEccchhcCcCCCcccccccccCcEEEeccCCCC
Confidence 99999999999999999999999999998888777666553 3899999999999999 6998 9999999999
Q ss_pred HHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 504 AVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 504 ~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
...|.||+||+||.|.+|.++.|++..|.
T Consensus 515 ~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 515 RRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999999999998653
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5e-36 Score=298.85 Aligned_cols=298 Identities=16% Similarity=0.161 Sum_probs=197.0
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 202 (548)
++++.||||||||++|+++++..+... .+.+++|++|+++|+.|+.+.+..+... .+..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---------------~~~~ii~v~P~~~L~~q~~~~l~~~f~~------~~~~ 59 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---------------KADRVIIALPTRATINAMYRRAKELFGS------NLGL 59 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---------------CCCeEEEEeehHHHHHHHHHHHHHHhCc------ccEE
Confidence 589999999999999999999876432 3568999999999999999999987532 1222
Q ss_pred EeCCCCc------------------------cCCCCcEEEeChHHHHhhcChhhhhccccc--cCeeEEEEecchhhccC
Q 045757 203 VCGGQGW------------------------PIGKPDVIVSTPAALLNNIDPKRRRRMEFV--RGVKYVVFDEADMLLCG 256 (548)
Q Consensus 203 ~~g~~~~------------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~--~~~~~vV~DEah~l~~~ 256 (548)
.+++... ..-..+|+|+||+++...+..........+ -..++||+||+|.+.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~ 139 (358)
T TIGR01587 60 LHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY 139 (358)
T ss_pred eeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH
Confidence 2221110 012367999999999877654211101111 12479999999998765
Q ss_pred ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCccc
Q 045757 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIK 336 (548)
Q Consensus 257 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (548)
++.. +..++..++
T Consensus 140 ~~~~-l~~~l~~l~------------------------------------------------------------------ 152 (358)
T TIGR01587 140 TLAL-ILAVLEVLK------------------------------------------------------------------ 152 (358)
T ss_pred HHHH-HHHHHHHHH------------------------------------------------------------------
Confidence 4443 444443332
Q ss_pred chhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeee--cchhhHHHHHHHH
Q 045757 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV--TVDTQVDALIEAV 414 (548)
Q Consensus 337 ~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l 414 (548)
....|+++||||++.. ...+.................. .....+.+... ....+...+...+
T Consensus 153 -----------~~~~~~i~~SATlp~~----l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~ 216 (358)
T TIGR01587 153 -----------DNDVPILLMSATLPKF----LKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLL 216 (358)
T ss_pred -----------HcCCCEEEEecCchHH----HHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHH
Confidence 1357899999999832 2222222111100000000000 00011111111 1112233333333
Q ss_pred HHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCC--ceEEecCCCCHHHHHHH----HHhhc-cCCcEEEEeCcccccC
Q 045757 415 KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGI--ECYCYHKDLSLEERAKT----LVNFQ-EKGGVFVCTDAAARGI 487 (548)
Q Consensus 415 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~----~~~f~-~~~~vLv~T~~~~~Gi 487 (548)
.. ...++++||||++++.++.+++.|.+.+. .+..+||+++..+|.+. ++.|+ ++..|||||+++++|+
T Consensus 217 ~~----~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~Gi 292 (358)
T TIGR01587 217 EF----IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASL 292 (358)
T ss_pred HH----hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhcee
Confidence 22 13568999999999999999999988766 49999999999999764 88898 5669999999999999
Q ss_pred CCCCCCEEEEecCCCCHHHHHHHhcccccCCCc----ceEEEEeecCc
Q 045757 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQY----GLVTSLYTESN 531 (548)
Q Consensus 488 Dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----G~~i~~~~~~~ 531 (548)
|++ +++||++..| ...|+||+||+||.|+. |.++++....+
T Consensus 293 Di~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 293 DIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 995 8999998766 78999999999998864 36777766543
No 70
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.2e-36 Score=337.25 Aligned_cols=350 Identities=14% Similarity=0.151 Sum_probs=236.4
Q ss_pred HHHHHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEE
Q 045757 93 DRLIRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLV 171 (548)
Q Consensus 93 ~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Li 171 (548)
..+.+.+++ .|| .|+++|.++++.+++|+|++++||||+|||++++++++... . .+.++||
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~----------------~g~~aLV 127 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L----------------KGKKCYI 127 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h----------------cCCeEEE
Confidence 345566665 799 69999999999999999999999999999996665554332 1 2568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccC
Q 045757 172 LCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241 (548)
Q Consensus 172 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~ 241 (548)
|+||++|+.|+++.++.++...+.. +++..++|+.... .+.++|+|+||+.|.+.+... . ..+
T Consensus 128 l~PTreLa~Qi~~~l~~l~~~~~~~-v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-----~-~~~ 200 (1638)
T PRK14701 128 ILPTTLLVKQTVEKIESFCEKANLD-VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-----K-HLK 200 (1638)
T ss_pred EECHHHHHHHHHHHHHHHHhhcCCc-eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-----h-hCC
Confidence 9999999999999999988765422 6778888886533 346999999999998765421 1 256
Q ss_pred eeEEEEecchhhccC-----------ChHHHHHH-HHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhh
Q 045757 242 VKYVVFDEADMLLCG-----------SFQNQVIR-LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309 (548)
Q Consensus 242 ~~~vV~DEah~l~~~-----------~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (548)
++++|+||||+++++ +|...+.. +++.++... ... .....
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~----------~~~---------~~~~~--------- 252 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKK----------QGN---------IEDAM--------- 252 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhccc----------ccc---------cchhh---------
Confidence 899999999999874 44444432 111111000 000 00000
Q ss_pred hcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccce-eEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ-YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
.....++.....++...| .+++|||++.... ....+..+ ..+......
T Consensus 253 -------------------------~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~----l~f~v~~~~ 301 (1638)
T PRK14701 253 -------------------------EKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYREL----LGFEVGSGR 301 (1638)
T ss_pred -------------------------hhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcC----eEEEecCCC
Confidence 000001111112223445 6779999985321 11222221 112222222
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhH---HHHHHHHHHHcCCceEEecCCCCHHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDA---VYAVTKILKTAGIECYCYHKDLSLEERAK 465 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 465 (548)
.....+.+.++......+ ..+.+.+.. .+..+||||++++. |+.+++.|.+.|+.+..+||+ |..
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~------~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKK------LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHh------CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 223344555554443333 445555443 24689999999875 589999999999999999995 889
Q ss_pred HHHhhc-cCCcEEEEe----CcccccCCCCC-CCEEEEecCCC---CHHHHHHHh-------------cccccCCCcceE
Q 045757 466 TLVNFQ-EKGGVFVCT----DAAARGIDIPN-VSHVIQADFAT---SAVDFLHRV-------------GRTARAGQYGLV 523 (548)
Q Consensus 466 ~~~~f~-~~~~vLv~T----~~~~~GiDip~-v~~VI~~~~p~---s~~~~~Qr~-------------GR~gR~g~~G~~ 523 (548)
.+++|+ ++.+||||| ++++||||+|+ |++|||+|.|. +...|.|.. ||+||.|.++.+
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 999999 788999999 58899999999 99999999998 887666655 999999998888
Q ss_pred EEEeecCchhHHHHH
Q 045757 524 TSLYTESNRDLVDTI 538 (548)
Q Consensus 524 i~~~~~~~~~~~~~i 538 (548)
+..+...+...++.+
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 450 VLDVFPEDVEFLRSI 464 (1638)
T ss_pred HHHhHHHHHHHHHHH
Confidence 755555555444443
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.7e-36 Score=309.33 Aligned_cols=385 Identities=18% Similarity=0.221 Sum_probs=238.9
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
++|+|.+++..+..+++.+++|+||+|||++|.+|++...+. +..++|++|+++|+.|+.+++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----------------g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-----------------GKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-----------------CCceEEeCCCHHHHHHHHHHH
Confidence 345555555544444457999999999999999998776643 456999999999999999999
Q ss_pred HHhhcccCCCcEEEEEEeCCCC---cc------CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhhc
Q 045757 187 NALSADNGEPLVRAVAVCGGQG---WP------IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~---~~------~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l~ 254 (548)
..+....| +.+....++.. +. ..+++|+++||+.+ .+.+...-. .....++.+.++|+||||.++
T Consensus 132 ~~l~~~LG---Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 132 GPVYEWLG---LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HHHHhhcC---CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 99998888 77777665421 11 25799999999999 455432210 011236789999999999884
Q ss_pred cC----------------ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCC-------CCCCCCCchhhhh------
Q 045757 255 CG----------------SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDN-------SSLTQPDLQDEEN------ 305 (548)
Q Consensus 255 ~~----------------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------ 305 (548)
-. ..+..+..+...+..... +..........+.. ..+...++.+...
T Consensus 209 iDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~d----y~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~ 284 (762)
T TIGR03714 209 LDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVD----YIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRH 284 (762)
T ss_pred hccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCC----eEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHH
Confidence 21 122333344443332100 00000000000000 0000000110000
Q ss_pred ----h--------hhhhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccce
Q 045757 306 ----L--------QDEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352 (548)
Q Consensus 306 ----~--------~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 352 (548)
+ ...|+-..+... +.. .+++++-..++....+-.++.+...| .+
T Consensus 285 i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y---~k 361 (762)
T TIGR03714 285 INLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMF---NK 361 (762)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC---ch
Confidence 0 001111111100 000 11112212222222223344444444 56
Q ss_pred eEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc---ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEE
Q 045757 353 YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMV 429 (548)
Q Consensus 353 ~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lV 429 (548)
..+||.|.... ..++.+-|.-....++ .+.+.. ....+......|...+++.+.+.. ..+.++||
T Consensus 362 l~GmTGTa~~~----~~Ef~~iY~l~v~~IP-----t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~---~~~~pvLI 429 (762)
T TIGR03714 362 LSGMTGTGKVA----EKEFIETYSLSVVKIP-----TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH---ETGQPVLL 429 (762)
T ss_pred hcccCCCChhH----HHHHHHHhCCCEEEcC-----CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh---hCCCCEEE
Confidence 88899986422 2222222211111221 111221 223456677778888888777642 46789999
Q ss_pred EeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCC---------CCCEEEEecC
Q 045757 430 FANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP---------NVSHVIQADF 500 (548)
Q Consensus 430 F~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip---------~v~~VI~~~~ 500 (548)
||++++.++.+++.|.+.|+.+..+||++...++..+..+++. ..|+|||++++||+|++ ++.+|++++.
T Consensus 430 ft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~-g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ 508 (762)
T TIGR03714 430 ITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK-GAVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM 508 (762)
T ss_pred EECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC-CeEEEEccccccccCCCCCccccccCCeEEEEecCC
Confidence 9999999999999999999999999999998887766655542 38999999999999999 9999999999
Q ss_pred CCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 501 ATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 501 p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
|....+ .||+||+||.|.+|.++.|++..|.
T Consensus 509 ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 509 ENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 988877 9999999999999999999998654
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.5e-35 Score=322.20 Aligned_cols=321 Identities=18% Similarity=0.232 Sum_probs=205.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEE
Q 045757 93 DRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVL 172 (548)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil 172 (548)
.++.+.+.+.....|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+... +.++|||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------------g~~vLIL 127 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------------GKRCYII 127 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------------CCeEEEE
Confidence 34555565544458999999999999999999999999999997 667777665432 5789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 173 CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 173 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
+||++|+.|+.+.++.+....+.....+..++|+.... .++++|+|+||++|.+.+..- ..++
T Consensus 128 ~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-------~~~~ 200 (1171)
T TIGR01054 128 LPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-------GPKF 200 (1171)
T ss_pred eCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-------cCCC
Confidence 99999999999999999877663333344567775432 246999999999998765321 1179
Q ss_pred eEEEEecchhhccCChHHHHHHHHhhhhccHHHHhh-hcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCC
Q 045757 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR-MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDS 321 (548)
Q Consensus 243 ~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (548)
+++|+||||++++++. .+.+++..+-+....+.. +.....+.. ....
T Consensus 201 ~~iVvDEaD~~L~~~k--~vd~il~llGF~~e~i~~il~~~~~~~~---------~~~~--------------------- 248 (1171)
T TIGR01054 201 DFIFVDDVDALLKASK--NVDKLLKLLGFSEELIEKAWKLIRLRLK---------LYRA--------------------- 248 (1171)
T ss_pred CEEEEeChHhhhhccc--cHHHHHHHcCCCHHHHHHHHHHhhhccc---------cchH---------------------
Confidence 9999999999987432 133333222111100000 000000000 0000
Q ss_pred CccccccccccCcccchhhHHHHhhhcccce--eEEEeecc-CCCccchhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 322 DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ--YIFVAATL-PINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q--~v~~SAT~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
..-..+.......+...| ++++|||. +...+. .++... ..+..........++.+.+
T Consensus 249 -------------~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l----l~~~v~~~~~~~r~I~~~~ 308 (1171)
T TIGR01054 249 -------------LHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL----LGFEVGGGSDTLRNVVDVY 308 (1171)
T ss_pred -------------HHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc----cceEecCccccccceEEEE
Confidence 000011111112223334 67789994 432221 111111 1111111112223344444
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCCh---hHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV---DAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
..... +...+.+.+.. .+.++||||+++ +.++.+++.|.+.|+.+..+||+++ ..+++.|+ |+.
T Consensus 309 ~~~~~--~~~~L~~ll~~------l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~ 376 (1171)
T TIGR01054 309 VEDED--LKETLLEIVKK------LGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEI 376 (1171)
T ss_pred Eeccc--HHHHHHHHHHH------cCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCC
Confidence 43322 23344444433 246899999999 9999999999999999999999997 36899999 778
Q ss_pred cEEEEe----CcccccCCCCC-CCEEEEecCC
Q 045757 475 GVFVCT----DAAARGIDIPN-VSHVIQADFA 501 (548)
Q Consensus 475 ~vLv~T----~~~~~GiDip~-v~~VI~~~~p 501 (548)
+||||| ++++||||+|+ +++|||+|.|
T Consensus 377 ~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 377 DVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred CEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999995 89999999999 8999999887
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.9e-35 Score=299.76 Aligned_cols=391 Identities=18% Similarity=0.211 Sum_probs=249.9
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|+++|.-+...+..|+ +..++||+|||++|.+|++...+. +..++|++||..||.
T Consensus 52 ~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------G~~V~VvTpt~~LA~ 111 (745)
T TIGR00963 52 VLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------------GKGVHVVTVNDYLAQ 111 (745)
T ss_pred HhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------------CCCEEEEcCCHHHHH
Confidence 4576 79999999999888776 999999999999999999655443 457999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l 253 (548)
|.++++..+....| +++.++.|+.+.. ...++|+|+||..| .+++..+.. .....++++.++|+||+|.+
T Consensus 112 qdae~~~~l~~~LG---Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~ 188 (745)
T TIGR00963 112 RDAEWMGQVYRFLG---LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSI 188 (745)
T ss_pred HHHHHHHHHhccCC---CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHH
Confidence 99999999999988 8999999986543 34589999999999 888755411 11224678999999999987
Q ss_pred cc-CChHH---------------HHHHHHhhhhccHHHHhhhcccCcccccccCC-------CCCCCCCchhh------h
Q 045757 254 LC-GSFQN---------------QVIRLINMFRFDEKQLSRMNESGVEKPLEMDN-------SSLTQPDLQDE------E 304 (548)
Q Consensus 254 ~~-~~~~~---------------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~ 304 (548)
+- ..... ....+.+.+.... ............+.. ..+....+.+. .
T Consensus 189 LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~----dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~ 264 (745)
T TIGR00963 189 LIDEARTPLIISGPAEKSTELYLQANRFAKALEKEV----HYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIH 264 (745)
T ss_pred hHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCC----CeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHH
Confidence 53 11111 1111221111000 000000000000000 00000001100 0
Q ss_pred hh----h--------hhhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccc
Q 045757 305 NL----Q--------DEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSK 351 (548)
Q Consensus 305 ~~----~--------~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (548)
.+ . ..|+-..+... +.. .++++....++.....-.++.+...| .
T Consensus 265 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y---~ 341 (745)
T TIGR00963 265 YINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLY---E 341 (745)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhC---c
Confidence 00 0 00111111000 000 01111112222222222344444444 3
Q ss_pred eeEEEeeccCCCccchhhhhhhhcCC-CCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEE
Q 045757 352 QYIFVAATLPINGKKTAGAVLKQMFP-DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVF 430 (548)
Q Consensus 352 q~v~~SAT~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF 430 (548)
...+||.|..... .. +...+. ....++... ..... -....+......|...+.+.+.... ..+.++|||
T Consensus 342 kl~GmTGTa~te~----~E-~~~iY~l~vv~IPtnk-p~~R~-d~~d~i~~t~~~k~~ai~~~i~~~~---~~grpvLV~ 411 (745)
T TIGR00963 342 KLSGMTGTAKTEE----EE-FEKIYNLEVVVVPTNR-PVIRK-DLSDLVYKTEEEKWKAVVDEIKERH---AKGQPVLVG 411 (745)
T ss_pred hhhccCCCcHHHH----HH-HHHHhCCCEEEeCCCC-Ceeee-eCCCeEEcCHHHHHHHHHHHHHHHH---hcCCCEEEE
Confidence 6788888874221 22 222222 111221111 11111 1122344455567777777665542 568999999
Q ss_pred eCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhcc-CCcEEEEeCcccccCCCCC-------CCEEEEecCCC
Q 045757 431 ANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPN-------VSHVIQADFAT 502 (548)
Q Consensus 431 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~vLv~T~~~~~GiDip~-------v~~VI~~~~p~ 502 (548)
|+++..++.+++.|.+.|+.+..+|++ ..+|+..+..|.+ ...|+|||++++||+||+. ..+||+++.|.
T Consensus 412 t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~ 489 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE 489 (745)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC
Confidence 999999999999999999999999999 7899999999995 4599999999999999998 55999999999
Q ss_pred CHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 503 SAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 503 s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
|...|.|++||+||.|.+|.+..|++..|.-
T Consensus 490 s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 490 SRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 9999999999999999999999999998643
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.7e-34 Score=311.02 Aligned_cols=324 Identities=24% Similarity=0.281 Sum_probs=225.3
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..++++|.+++..++.+ |+++++|||+|||+++++++...+. . ++.++|||+||++|+.|+.+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~---------------~~~~vLvl~Pt~~L~~Q~~~ 76 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-K---------------KGGKVLILAPTKPLVEQHAE 76 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-h---------------CCCeEEEEeCcHHHHHHHHH
Confidence 47899999999888876 9999999999999999998887763 2 36799999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
.++.+....+ .++..++|+.... ..+.+|+|+||+.+...+.... ..+.++++|||||||++......
T Consensus 77 ~~~~~~~~~~---~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~~~liVvDEaH~~~~~~~~ 149 (773)
T PRK13766 77 FFRKFLNIPE---EKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGR----ISLEDVSLLIFDEAHRAVGNYAY 149 (773)
T ss_pred HHHHHhCCCC---ceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCC----CChhhCcEEEEECCccccccccH
Confidence 9998764322 4677777765532 3468999999999976654332 33678999999999988644333
Q ss_pred HHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchh
Q 045757 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKD 339 (548)
Q Consensus 260 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (548)
..+...+...
T Consensus 150 ~~i~~~~~~~---------------------------------------------------------------------- 159 (773)
T PRK13766 150 VYIAERYHED---------------------------------------------------------------------- 159 (773)
T ss_pred HHHHHHHHhc----------------------------------------------------------------------
Confidence 3222221110
Q ss_pred hHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcC--------------------CCCcc------------------
Q 045757 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMF--------------------PDADW------------------ 381 (548)
Q Consensus 340 ~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~--------------------~~~~~------------------ 381 (548)
...+.++++|||+..... .+...+.+.. ....+
T Consensus 160 --------~~~~~il~lTaTP~~~~~-~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~ 230 (773)
T PRK13766 160 --------AKNPLVLGLTASPGSDEE-KIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNE 230 (773)
T ss_pred --------CCCCEEEEEEcCCCCCHH-HHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHH
Confidence 123557777777532210 0111111000 00000
Q ss_pred --------------c-ccc------cccccCcccccc----e--------------------------------------
Q 045757 382 --------------I-SGN------YLHFHNPRLKEK----W-------------------------------------- 398 (548)
Q Consensus 382 --------------~-~~~------~~~~~~~~~~~~----~-------------------------------------- 398 (548)
. ... ........+... +
T Consensus 231 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l 310 (773)
T PRK13766 231 ALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERL 310 (773)
T ss_pred HHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 0 000 000000000000 0
Q ss_pred ------------------------------eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC
Q 045757 399 ------------------------------IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG 448 (548)
Q Consensus 399 ------------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~ 448 (548)
.......|...+.+.+.+.+.. ..+.++||||+++.+++.+++.|...+
T Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~-~~~~kvlIF~~~~~t~~~L~~~L~~~~ 389 (773)
T PRK13766 311 REEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK-NPDSRIIVFTQYRDTAEKIVDLLEKEG 389 (773)
T ss_pred HhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHhCC
Confidence 0001122344444444443321 467899999999999999999999999
Q ss_pred CceEEecCC--------CCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCC
Q 045757 449 IECYCYHKD--------LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519 (548)
Q Consensus 449 ~~~~~~~~~--------~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 519 (548)
+.+..+||. |+..+|.+++++|+ ++.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|.
T Consensus 390 ~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 390 IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 999999886 99999999999999 667999999999999999999999999999999999999999999865
Q ss_pred cceEEEEeecCchh
Q 045757 520 YGLVTSLYTESNRD 533 (548)
Q Consensus 520 ~G~~i~~~~~~~~~ 533 (548)
|.++.++.+...+
T Consensus 470 -~~v~~l~~~~t~e 482 (773)
T PRK13766 470 -GRVVVLIAKGTRD 482 (773)
T ss_pred -CEEEEEEeCCChH
Confidence 8899999876543
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-34 Score=295.88 Aligned_cols=315 Identities=20% Similarity=0.255 Sum_probs=209.7
Q ss_pred CCcHHHHhhhhcccC-C--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 106 RPSIVQAASVGPVLS-G--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~-g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.++|+|.+++..+.. | ++.++++|||+|||++.+..+ ..+ +.++|||||+..|+.||
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-------------------~k~tLILvps~~Lv~QW 314 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-------------------KKSCLVLCTSAVSVEQW 314 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-------------------CCCEEEEeCcHHHHHHH
Confidence 589999999988874 3 479999999999999966443 332 35799999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEeCCCCcc-CCCCcEEEeChHHHHhhcChhh--hhccccc--cCeeEEEEecchhhccCC
Q 045757 183 VRMANALSADNGEPLVRAVAVCGGQGWP-IGKPDVIVSTPAALLNNIDPKR--RRRMEFV--RGVKYVVFDEADMLLCGS 257 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~--~~~~~vV~DEah~l~~~~ 257 (548)
.+.+.++..... ..+..+.|+.+.. .....|+|+|++++........ ......+ ..+++||+||||++....
T Consensus 315 ~~ef~~~~~l~~---~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~ 391 (732)
T TIGR00603 315 KQQFKMWSTIDD---SQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM 391 (732)
T ss_pred HHHHHHhcCCCC---ceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH
Confidence 999998853322 4566666665433 2347899999998854322110 0111122 358899999999875433
Q ss_pred hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccc
Q 045757 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKK 337 (548)
Q Consensus 258 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (548)
|. .++..+
T Consensus 392 fr----~il~~l-------------------------------------------------------------------- 399 (732)
T TIGR00603 392 FR----RVLTIV-------------------------------------------------------------------- 399 (732)
T ss_pred HH----HHHHhc--------------------------------------------------------------------
Confidence 32 232222
Q ss_pred hhhHHHHhhhcccceeEEEeeccCCCccchh--hhhhhhcCCCCcccc---cccccccC---------ccc---------
Q 045757 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTA--GAVLKQMFPDADWIS---GNYLHFHN---------PRL--------- 394 (548)
Q Consensus 338 ~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~--~~~l~~~~~~~~~~~---~~~~~~~~---------~~~--------- 394 (548)
.....+++|||+...+.... ..++........|.. .+++.... +..
T Consensus 400 -----------~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 400 -----------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred -----------CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 13456888999865543321 111111111111100 11110000 000
Q ss_pred -ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 395 -KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 395 -~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
...........|+..+...+..+. ..+.++||||.+...++.+++.|. +..+||+++..+|.++++.|+ +
T Consensus 469 ~~k~~l~~~np~K~~~~~~Li~~he---~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 469 RKRMLLYVMNPNKFRACQFLIRFHE---QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred hhhhHHhhhChHHHHHHHHHHHHHh---hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhC
Confidence 000001112233334333333321 367899999999999999998873 567899999999999999998 4
Q ss_pred -CCcEEEEeCcccccCCCCCCCEEEEecCC-CCHHHHHHHhcccccCCCcceE-------EEEeecCchhH
Q 045757 473 -KGGVFVCTDAAARGIDIPNVSHVIQADFA-TSAVDFLHRVGRTARAGQYGLV-------TSLYTESNRDL 534 (548)
Q Consensus 473 -~~~vLv~T~~~~~GiDip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~G~~-------i~~~~~~~~~~ 534 (548)
..++||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++.+..+.
T Consensus 541 ~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 541 PKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 45999999999999999999999999987 5999999999999999876665 88888876554
No 76
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=294.71 Aligned_cols=343 Identities=19% Similarity=0.243 Sum_probs=249.5
Q ss_pred HCCCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
-++|..+..+|..++|.+. .+.|++||||||+|||-.|+|.|+..+.+. ...-.....+-+++||+|+++||
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~-------~~~~~i~k~~fKiVYIaPmKALa 177 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH-------EEQGDIAKDDFKIVYIAPMKALA 177 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh-------ccccccccCCceEEEEechHHHH
Confidence 4477889999999999887 458999999999999999999999998752 11122233567999999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccC
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~ 256 (548)
.++++.|.+-+...| +++.-++|+.... ...++|+|+|||+. |.+.........+++.+++||+||+| ++..
T Consensus 178 ~Em~~~~~kkl~~~g---i~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd 252 (1230)
T KOG0952|consen 178 AEMVDKFSKKLAPLG---ISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHD 252 (1230)
T ss_pred HHHHHHHhhhccccc---ceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcC
Confidence 999999988777667 9999999997654 46799999999997 44444444335567889999999999 5678
Q ss_pred ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCccc
Q 045757 257 SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIK 336 (548)
Q Consensus 257 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (548)
.++..++.|+.+..
T Consensus 253 ~RGpvlEtiVaRtl------------------------------------------------------------------ 266 (1230)
T KOG0952|consen 253 DRGPVLETIVARTL------------------------------------------------------------------ 266 (1230)
T ss_pred cccchHHHHHHHHH------------------------------------------------------------------
Confidence 89999999987653
Q ss_pred chhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhh-cCCCCcccccccccccCcccccceeeecch---h-------
Q 045757 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ-MFPDADWISGNYLHFHNPRLKEKWIEVTVD---T------- 405 (548)
Q Consensus 337 ~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------- 405 (548)
+..+......+++++|||+|.. ..++ .+++- .......+...+.. ..+.+.++-.... .
T Consensus 267 -----r~vessqs~IRivgLSATlPN~-eDvA-~fL~vn~~~glfsFd~~yRP---vpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 267 -----RLVESSQSMIRIVGLSATLPNY-EDVA-RFLRVNPYAGLFSFDQRYRP---VPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred -----HHHHhhhhheEEEEeeccCCCH-HHHH-HHhcCCCccceeeecccccc---cceeeeEEeeecccchhhhhhHHH
Confidence 2222334678999999999843 3333 33332 12222222222222 2233333322222 1
Q ss_pred -hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC-----------------------CceEEecCCCCHH
Q 045757 406 -QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG-----------------------IECYCYHKDLSLE 461 (548)
Q Consensus 406 -~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-----------------------~~~~~~~~~~~~~ 461 (548)
..+.+.+.+ ..+..++|||.++..+.+.|+.|.+.+ .....+|++|...
T Consensus 337 ~~~~kv~e~~-------~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~ 409 (1230)
T KOG0952|consen 337 VCYDKVVEFL-------QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRS 409 (1230)
T ss_pred HHHHHHHHHH-------HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchh
Confidence 222233333 458999999999999999999886641 2467899999999
Q ss_pred HHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ecCC------CCHHHHHHHhcccccC--CCcceEEEEee
Q 045757 462 ERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----ADFA------TSAVDFLHRVGRTARA--GQYGLVTSLYT 528 (548)
Q Consensus 462 ~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~~p------~s~~~~~Qr~GR~gR~--g~~G~~i~~~~ 528 (548)
+|..+.+.|. |..+||+||..++.|+|+|+--++|- ||.- .+..+.+|..|||||- +..|.++++.+
T Consensus 410 DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 410 DRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred hHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 9999999999 55699999999999999996555542 3322 3678899999999995 45699998887
Q ss_pred cCchhHHHHH
Q 045757 529 ESNRDLVDTI 538 (548)
Q Consensus 529 ~~~~~~~~~i 538 (548)
.+-.+.+..+
T Consensus 490 ~dkl~~Y~sL 499 (1230)
T KOG0952|consen 490 RDKLDHYESL 499 (1230)
T ss_pred ccHHHHHHHH
Confidence 7766555443
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.3e-34 Score=287.56 Aligned_cols=390 Identities=20% Similarity=0.233 Sum_probs=232.1
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
-.++.+|.+..-.++ |+|++|++|||+|||+++...++..+... +.+++++++|++.|+.|+..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------------p~~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------------PKGKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---------------CcceEEEeeCCchHHHHHHH
Confidence 368999999998888 99999999999999999988888877543 46899999999999999986
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCCh
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~ 258 (548)
.+..++.. ..+....||.... ....+|+|+||+.+.+.+.+..... ++.+.++||||||+-....-
T Consensus 125 ~~~~~~~~-----~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~---ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 125 CFSIYLIP-----YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE---LSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHhhccCc-----ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc---cceEEEEEEccccccccccc
Confidence 66666533 3444555553322 3468999999999988887664332 78899999999998766554
Q ss_pred HHHHH-HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcc--
Q 045757 259 QNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSI-- 335 (548)
Q Consensus 259 ~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 335 (548)
+..+. .++..-.... ++-..+++.. .+.....+........ .+...+..+ .....+....
T Consensus 197 Y~~Vmr~~l~~k~~~~-------------qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi--~~~y~~lr~~~~ 259 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGN-------------QILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSI--KSNYEELREHVQ 259 (746)
T ss_pred HHHHHHHHHHhhhccc-------------cEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhh--hhhHHHHhccCc
Confidence 44444 4433221110 1111111111 2222222222222111 222222222 1111000000
Q ss_pred -----------cchhhHHHHhhhcccceeEEE---------------------eeccCCCcc--chhhhhhh--------
Q 045757 336 -----------KKKDWRRVRKNYQRSKQYIFV---------------------AATLPINGK--KTAGAVLK-------- 373 (548)
Q Consensus 336 -----------~~~~~~~~~~~~~~~~q~v~~---------------------SAT~~~~~~--~~~~~~l~-------- 373 (548)
....+..+-..+-...+...+ .-+++.+.+ ..+..+..
T Consensus 260 i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~ 339 (746)
T KOG0354|consen 260 IPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS 339 (746)
T ss_pred ccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh
Confidence 000011111111000000000 000111111 00000000
Q ss_pred -------------hcCCCCccccc------cc-ccccCc----ccccceeee-cchhhHHHHHHHHHHHhhccCCCCcEE
Q 045757 374 -------------QMFPDADWISG------NY-LHFHNP----RLKEKWIEV-TVDTQVDALIEAVKERLEFGAETSRTM 428 (548)
Q Consensus 374 -------------~~~~~~~~~~~------~~-~~~~~~----~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~l 428 (548)
+.... .+... +. ...... .+.+..... ....++..+.+.+.+... .....++|
T Consensus 340 ~gir~~~~l~~~~~f~~e-~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~-~~~dsR~I 417 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEE-VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE-QNPDSRTI 417 (746)
T ss_pred cchhhHHHHhhhhhhccc-cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh-cCCCccEE
Confidence 00000 00000 00 000000 000000000 124566777777777666 56788999
Q ss_pred EEeCChhHHHHHHHHHHHc---CCceEE--------ecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEE
Q 045757 429 VFANTVDAVYAVTKILKTA---GIECYC--------YHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVI 496 (548)
Q Consensus 429 VF~~s~~~~~~l~~~L~~~---~~~~~~--------~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI 496 (548)
||+.++..+..+..+|.+. ++.... ...+|++.+++++++.|+ |+.+|||||+++++|+||+.|+.||
T Consensus 418 IFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI 497 (746)
T KOG0354|consen 418 IFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI 497 (746)
T ss_pred EEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE
Confidence 9999999999999999842 222222 234799999999999999 7779999999999999999999999
Q ss_pred EecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 497 QADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 497 ~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
-||...|+...+||.|| ||+ +.|.|+++++..+....+...
T Consensus 498 cYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~~ 538 (746)
T KOG0354|consen 498 CYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERNN 538 (746)
T ss_pred EecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHHH
Confidence 99999999999999999 998 679999999965544444433
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.6e-33 Score=277.17 Aligned_cols=302 Identities=19% Similarity=0.242 Sum_probs=193.2
Q ss_pred HHHhhhhcccCCCc--EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 110 VQAASVGPVLSGKD--VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 110 ~Q~~~i~~i~~g~~--~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
+|.++++.+.++++ ++++||||+|||++|++|++.. ..++++++|+++|++|+.+.++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------~~~~~~~~P~~aL~~~~~~~~~ 60 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------------ENDTIALYPTNALIEDQTEAIK 60 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------------CCCEEEEeChHHHHHHHHHHHH
Confidence 69999999998864 7889999999999999998841 3578999999999999999999
Q ss_pred HhhcccC-CCcEEEEEEeCCCCc--------------------------cCCCCcEEEeChHHHHhhcChhh----hhcc
Q 045757 188 ALSADNG-EPLVRAVAVCGGQGW--------------------------PIGKPDVIVSTPAALLNNIDPKR----RRRM 236 (548)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~g~~~~--------------------------~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~ 236 (548)
++....+ .....+..+.|.... ....++|+++||+.+..++.... ....
T Consensus 61 ~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~ 140 (357)
T TIGR03158 61 EFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAA 140 (357)
T ss_pred HHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchh
Confidence 8874331 112555556654111 02368899999999976553211 1111
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
.++.++++||+||+|.+..+.....+.. +...
T Consensus 141 ~~~~~~~~iV~DE~H~~~~~~~~~~~~~-l~~~----------------------------------------------- 172 (357)
T TIGR03158 141 GFYTKFSTVIFDEFHLYDAKQLVGMLFL-LAYM----------------------------------------------- 172 (357)
T ss_pred hhhcCCCEEEEecccccCcccchhhhhh-hHHH-----------------------------------------------
Confidence 2357899999999998754332221100 0000
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccc-------
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHF------- 389 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------- 389 (548)
. +........+++++|||++......+..... .......+.+.....
T Consensus 173 ------------------------~-~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~-~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 173 ------------------------Q-LIRFFECRRKFVFLSATPDPALILRLQNAKQ-AGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred ------------------------H-HHHhhhcCCcEEEEecCCCHHHHHHHHhccc-cCceeeeecCcccccCCChhhh
Confidence 0 0000112469999999997543333222100 000111111110000
Q ss_pred ----------cCcccccceeeecchhhHHH---HHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC--CceEEe
Q 045757 390 ----------HNPRLKEKWIEVTVDTQVDA---LIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG--IECYCY 454 (548)
Q Consensus 390 ----------~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~~ 454 (548)
..+.+...+.. ....+... +.+.+.+.+. ...++++||||++++.++.+++.|++.+ +.+..+
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~-~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l 304 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFR-QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI 304 (357)
T ss_pred ccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHh-ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee
Confidence 00122222221 22222222 2232322211 1356799999999999999999999865 578899
Q ss_pred cCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccc
Q 045757 455 HKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA 515 (548)
Q Consensus 455 ~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~g 515 (548)
||.+++.+|.+.. +.+|||||+++++|||+|.+ +|| ++ |.+..+|+||+||+|
T Consensus 305 ~g~~~~~~R~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERAM-----QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHhc-----cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999987653 67999999999999999976 666 45 899999999999997
No 79
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.4e-32 Score=291.42 Aligned_cols=304 Identities=18% Similarity=0.203 Sum_probs=202.2
Q ss_pred HHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcC----cHHHHHHHHHH
Q 045757 110 VQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP----NVVLCEQVVRM 185 (548)
Q Consensus 110 ~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~P----t~~L~~q~~~~ 185 (548)
+-.+.+..+.+++.++++|+||||||. .+|.+...... ...+.+++.-| +++|+.++.++
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--------------g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--------------GVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--------------CCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 344555666667888999999999998 46743322111 01234555556 56888888887
Q ss_pred HHH-hhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecch-hhccCChHHH-H
Q 045757 186 ANA-LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQNQ-V 262 (548)
Q Consensus 186 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah-~l~~~~~~~~-~ 262 (548)
+.. ++...| .-....+....+++|+|+||++|++.+... ..++++++||+|||| ++++.+|.-. +
T Consensus 142 l~~~lG~~VG-------Y~vrf~~~~s~~t~I~v~TpG~LL~~l~~d-----~~Ls~~~~IIIDEAHERsLn~DfLLg~L 209 (1294)
T PRK11131 142 LETELGGCVG-------YKVRFNDQVSDNTMVKLMTDGILLAEIQQD-----RLLMQYDTIIIDEAHERSLNIDFILGYL 209 (1294)
T ss_pred Hhhhhcceec-------eeecCccccCCCCCEEEEChHHHHHHHhcC-----CccccCcEEEecCccccccccchHHHHH
Confidence 764 332222 111222223457899999999999988643 238899999999999 6777666432 2
Q ss_pred HHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHH
Q 045757 263 IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRR 342 (548)
Q Consensus 263 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (548)
..++..
T Consensus 210 k~lL~~-------------------------------------------------------------------------- 215 (1294)
T PRK11131 210 KELLPR-------------------------------------------------------------------------- 215 (1294)
T ss_pred HHhhhc--------------------------------------------------------------------------
Confidence 222211
Q ss_pred HHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc------hhhHHHHHHHHHH
Q 045757 343 VRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV------DTQVDALIEAVKE 416 (548)
Q Consensus 343 ~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~ 416 (548)
.+..|+++||||++. ..+.. ++.....+....... .+...+..... ...+..+++.+..
T Consensus 216 -----rpdlKvILmSATid~--e~fs~-----~F~~apvI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~ 280 (1294)
T PRK11131 216 -----RPDLKVIITSATIDP--ERFSR-----HFNNAPIIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDE 280 (1294)
T ss_pred -----CCCceEEEeeCCCCH--HHHHH-----HcCCCCEEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHH
Confidence 135799999999963 22222 221111111111110 12222222211 1223333433332
Q ss_pred HhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCc---eEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCC
Q 045757 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE---CYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVS 493 (548)
Q Consensus 417 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~ 493 (548)
.. ....+.+|||+++..+++.+++.|.+.++. +..+||+|+.++|..+++.+ ++.+|||||+++++|||+|+++
T Consensus 281 l~--~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIVATNIAEtSITIpgI~ 357 (1294)
T PRK11131 281 LG--REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVLATNVAETSLTVPGIK 357 (1294)
T ss_pred Hh--cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEEeccHHhhccccCcce
Confidence 21 235678999999999999999999988764 67899999999999988753 5669999999999999999999
Q ss_pred EEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecCchhH
Q 045757 494 HVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534 (548)
Q Consensus 494 ~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~ 534 (548)
+||+++. |.|..+|.||+||+||. .+|.||.+|++.+...
T Consensus 358 yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 358 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred EEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 9999863 35778999999999999 7899999999876543
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1.8e-30 Score=277.62 Aligned_cols=124 Identities=19% Similarity=0.322 Sum_probs=109.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHH-HHcCCceEEecCCCCHHHHHHHHHhhc-c--CCcEEEEeCcccccCCCCCCCEEEEe
Q 045757 423 ETSRTMVFANTVDAVYAVTKIL-KTAGIECYCYHKDLSLEERAKTLVNFQ-E--KGGVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~-~--~~~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
.+.++||||+++.++..+++.| ...|+.+..+||+|+..+|.++++.|+ + +.+|||||+++++|+|++.+++||+|
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 4779999999999999999999 467999999999999999999999998 3 46999999999999999999999999
Q ss_pred cCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 499 DFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 499 ~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
|+|+|+..|.||+||++|.|+.|.+.+++...+-..-+.|.+.+..++
T Consensus 572 DlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 572 DLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred cCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 999999999999999999999998776666655445566666665543
No 81
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=7.5e-31 Score=267.13 Aligned_cols=352 Identities=20% Similarity=0.215 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhh--hcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 045757 90 GLSDRLIRALENSGFGRPSIVQAASV--GPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRA 167 (548)
Q Consensus 90 ~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
+++.......+..|+..++.||.+|+ +.+++++|.|+.+||+.|||+++.+.++..++.. +.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----------------rr 270 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----------------RR 270 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----------------hh
Confidence 34444444556779999999999999 7788999999999999999999999999988876 67
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc--CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 168 PSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP--IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 168 ~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
.++++.|..+.+++-...+..+....| +.+..+.|..... .+.-++.|||.|+-+.+++.-... ..+..+++|
T Consensus 271 ~~llilp~vsiv~Ek~~~l~~~~~~~G---~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~--g~~~~~g~v 345 (1008)
T KOG0950|consen 271 NVLLILPYVSIVQEKISALSPFSIDLG---FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQ--GRLDFLGMV 345 (1008)
T ss_pred ceeEecceeehhHHHHhhhhhhccccC---CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhc--CCccccCcE
Confidence 899999999999999999999998888 6777666655433 456789999999987666543322 225678999
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||.|++.+.+.+..++.++.++...
T Consensus 346 vVdElhmi~d~~rg~~lE~~l~k~~y~----------------------------------------------------- 372 (1008)
T KOG0950|consen 346 VVDELHMIGDKGRGAILELLLAKILYE----------------------------------------------------- 372 (1008)
T ss_pred EEeeeeeeeccccchHHHHHHHHHHHh-----------------------------------------------------
Confidence 999999999999999999998876421
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcC-----CC--CcccccccccccC--ccccc
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMF-----PD--ADWISGNYLHFHN--PRLKE 396 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~-----~~--~~~~~~~~~~~~~--~~~~~ 396 (548)
......|+|+||||++... .+..++-...+ +. .+.+..+...... ..+..
T Consensus 373 --------------------~~~~~~~iIGMSATi~N~~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr 431 (1008)
T KOG0950|consen 373 --------------------NLETSVQIIGMSATIPNNS-LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLR 431 (1008)
T ss_pred --------------------ccccceeEeeeecccCChH-HHHHHhhhhheecccCcccchhccCCCcccccchhhHHHH
Confidence 1123378999999998432 22111111111 00 0000000000000 00000
Q ss_pred cee----eecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------------------------
Q 045757 397 KWI----EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------------------------- 447 (548)
Q Consensus 397 ~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------- 447 (548)
.+. ....+...+.+...+.+. -..+.++||||++++.|+.++..+...
T Consensus 432 ~ia~l~~~~~g~~dpD~~v~L~tet---~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 432 EIANLYSSNLGDEDPDHLVGLCTET---APEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred HhhhhhhhhcccCCCcceeeehhhh---hhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 000 000000001222112111 134567999999999999998766432
Q ss_pred -------------CCceEEecCCCCHHHHHHHHHhhcc-CCcEEEEeCcccccCCCCCCCEEEEecC----CCCHHHHHH
Q 045757 448 -------------GIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNVSHVIQADF----ATSAVDFLH 509 (548)
Q Consensus 448 -------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~vLv~T~~~~~GiDip~v~~VI~~~~----p~s~~~~~Q 509 (548)
...++++|++++.++|..+...|+. -..|++||+.++.|+|+|..+++|-.-+ ..+..+|.|
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQ 588 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQ 588 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHh
Confidence 3468999999999999999999995 5599999999999999998888775432 467889999
Q ss_pred HhcccccCCCc--ceEEEEeecCchhHHHHHH
Q 045757 510 RVGRTARAGQY--GLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 510 r~GR~gR~g~~--G~~i~~~~~~~~~~~~~i~ 539 (548)
|+|||||+|-. |.+++.+.+.+.+.+.++-
T Consensus 589 M~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 589 MVGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred hhhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 99999999865 9999999999987776543
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.8e-30 Score=258.12 Aligned_cols=294 Identities=22% Similarity=0.248 Sum_probs=199.6
Q ss_pred CCcHHHHhhhhcccC----CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVLS----GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~----g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|+++|.+|+..+.. ++.+++++|||+|||++++-.+. .+ ...+|||||+.+|+.|
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~-------------------~~~~Lvlv~~~~L~~Q 95 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL-------------------KRSTLVLVPTKELLDQ 95 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh-------------------cCCEEEEECcHHHHHH
Confidence 699999999999988 89999999999999998654443 33 3459999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
+.+.+....... ..+..+.|+...... ..|.|+|.+.+....... .....++.+||+||||++....+...
T Consensus 96 w~~~~~~~~~~~----~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~----~~~~~~~~liI~DE~Hh~~a~~~~~~ 166 (442)
T COG1061 96 WAEALKKFLLLN----DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLD----EFLGNEFGLIIFDEVHHLPAPSYRRI 166 (442)
T ss_pred HHHHHHHhcCCc----cccceecCceeccCC-CcEEEEEhHHHhhhhhhh----hhcccccCEEEEEccccCCcHHHHHH
Confidence 987776665322 123333343332222 679999999997642000 11123689999999999876555444
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
...+.
T Consensus 167 ~~~~~--------------------------------------------------------------------------- 171 (442)
T COG1061 167 LELLS--------------------------------------------------------------------------- 171 (442)
T ss_pred HHhhh---------------------------------------------------------------------------
Confidence 33332
Q ss_pred HHHhhhcccce-eEEEeeccCCCccchhhhhhhhcCCCCccc------cccccccc-Cccccc-----------------
Q 045757 342 RVRKNYQRSKQ-YIFVAATLPINGKKTAGAVLKQMFPDADWI------SGNYLHFH-NPRLKE----------------- 396 (548)
Q Consensus 342 ~~~~~~~~~~q-~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~-~~~~~~----------------- 396 (548)
... .+++|||++..+......+....-+..-.. ..+++... ...+..
T Consensus 172 --------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 172 --------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred --------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 222 799999977444323322222110000000 00000000 000000
Q ss_pred ----------------ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCH
Q 045757 397 ----------------KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSL 460 (548)
Q Consensus 397 ----------------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~ 460 (548)
.........+...+...+.. ...+.+++|||.+..+++.++..|...+. +..+.+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~ 318 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLK----HARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPK 318 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHH----hcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCH
Confidence 00000111112222222221 12577999999999999999999998888 8999999999
Q ss_pred HHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhccccc
Q 045757 461 EERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTAR 516 (548)
Q Consensus 461 ~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR 516 (548)
.+|..+++.|+ ++.++||++.++.+|+|+|+++++|......|...|+||+||.-|
T Consensus 319 ~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 319 EEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999 578999999999999999999999999999999999999999999
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=6.8e-30 Score=277.79 Aligned_cols=305 Identities=20% Similarity=0.233 Sum_probs=202.9
Q ss_pred hhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH-hhc
Q 045757 113 ASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA-LSA 191 (548)
Q Consensus 113 ~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~-~~~ 191 (548)
+.+..+.+++.++|+|+||||||.. +|.+..-... ...+++++.-|.+--+..+.+.+.+ +..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~--------------~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR--------------GSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC--------------CCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 4556666678899999999999984 5654322110 1234677778988877777654443 332
Q ss_pred ccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecch-hhccCChHHH-HHHHHhhh
Q 045757 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD-MLLCGSFQNQ-VIRLINMF 269 (548)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah-~l~~~~~~~~-~~~i~~~l 269 (548)
..| -.++.-....+....+..|.|+|++.|++.+.... .++++++||+|||| +.++.++.-. +..++..
T Consensus 138 ~lG---~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-----~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~- 208 (1283)
T TIGR01967 138 PLG---EKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDR-----FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR- 208 (1283)
T ss_pred Ccc---eEEeeEEcCCcccCCCceeeeccccHHHHHhhhCc-----ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-
Confidence 222 23332222333345678999999999998875432 37899999999999 5777665432 3333221
Q ss_pred hccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcc
Q 045757 270 RFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR 349 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (548)
..
T Consensus 209 ------------------------------------------------------------------------------rp 210 (1283)
T TIGR01967 209 ------------------------------------------------------------------------------RP 210 (1283)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred cceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc------hhhHHHHHHHHHHHhhccCC
Q 045757 350 SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV------DTQVDALIEAVKERLEFGAE 423 (548)
Q Consensus 350 ~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~ 423 (548)
..|+++||||+.. ..+.. ++.....+....... .+...+..... ......+...+..... ..
T Consensus 211 dLKlIlmSATld~--~~fa~-----~F~~apvI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~--~~ 278 (1283)
T TIGR01967 211 DLKIIITSATIDP--ERFSR-----HFNNAPIIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA--EG 278 (1283)
T ss_pred CCeEEEEeCCcCH--HHHHH-----HhcCCCEEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHh--hC
Confidence 5789999999962 22222 222111111111000 11111111111 1233444444444332 24
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcC---CceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCCEEEEecC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAG---IECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQADF 500 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~~VI~~~~ 500 (548)
.+.+|||+++..+++.+++.|.+.+ +.+..+||+|+.++|.++++.+ ++.+|||||+++++|||||+|++||+++.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 6899999999999999999999864 4588999999999999885543 34599999999999999999999999985
Q ss_pred C------------------CCHHHHHHHhcccccCCCcceEEEEeecCchhH
Q 045757 501 A------------------TSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534 (548)
Q Consensus 501 p------------------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~ 534 (548)
+ .|..+|.||+||+||.| +|.||.+|++.+...
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 3 47789999999999997 999999999886543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=4.9e-29 Score=263.55 Aligned_cols=313 Identities=20% Similarity=0.229 Sum_probs=209.5
Q ss_pred CCcHHHHhhhhcccCC---CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG---KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g---~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.+++.|.++++.+.++ +++++.|+||||||.+|+.++.+.+.. +..+||++|+++|+.|+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------------g~~vLvLvPt~~L~~Q~ 206 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------------GKQALVLVPEIALTPQM 206 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------------CCeEEEEeCcHHHHHHH
Confidence 5899999999999874 789999999999999998877766532 56899999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 183 VRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
.+.+++.. + .++..++|+.... .+.++|+|+|++.+. ..+.++++||+||+|.
T Consensus 207 ~~~l~~~f---g---~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 207 LARFRARF---G---APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred HHHHHHHh---C---CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----------ccccCCCEEEEECCCc
Confidence 99998754 2 5677788775432 356899999998763 2367899999999996
Q ss_pred hccCChH---HHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccc
Q 045757 253 LLCGSFQ---NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEE 329 (548)
Q Consensus 253 l~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (548)
..-+... .....+
T Consensus 270 ~s~~~~~~p~y~~r~v---------------------------------------------------------------- 285 (679)
T PRK05580 270 SSYKQQEGPRYHARDL---------------------------------------------------------------- 285 (679)
T ss_pred cccccCcCCCCcHHHH----------------------------------------------------------------
Confidence 4321110 000111
Q ss_pred cccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc------
Q 045757 330 TKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV------ 403 (548)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 403 (548)
...+ ....+.+++++|||++...... ...... ....+.........+ .-..+....
T Consensus 286 -----------a~~r-a~~~~~~~il~SATps~~s~~~---~~~g~~-~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~ 347 (679)
T PRK05580 286 -----------AVVR-AKLENIPVVLGSATPSLESLAN---AQQGRY-RLLRLTKRAGGARLP--EVEIIDMRELLRGEN 347 (679)
T ss_pred -----------HHHH-hhccCCCEEEEcCCCCHHHHHH---Hhccce-eEEEeccccccCCCC--eEEEEechhhhhhcc
Confidence 0000 1124679999999976322111 110000 000000000000000 011111100
Q ss_pred -hhhHHHHHHHHHHHhhccCCCCcEEEEeCCh------------------------------------------------
Q 045757 404 -DTQVDALIEAVKERLEFGAETSRTMVFANTV------------------------------------------------ 434 (548)
Q Consensus 404 -~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~------------------------------------------------ 434 (548)
..-...+++.+.+.+ ..+.++|||+|.+
T Consensus 348 ~~~ls~~l~~~i~~~l---~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~C 424 (679)
T PRK05580 348 GSFLSPPLLEAIKQRL---ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKAC 424 (679)
T ss_pred cCCCCHHHHHHHHHHH---HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCC
Confidence 011244555555554 3566888887753
Q ss_pred ------------hHHHHHHHHHHHc--CCceEEecCCCC--HHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE
Q 045757 435 ------------DAVYAVTKILKTA--GIECYCYHKDLS--LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ 497 (548)
Q Consensus 435 ------------~~~~~l~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~ 497 (548)
..++++++.|++. +..+..+|++++ .+++.+++++|+ ++.+|||+|+++++|+|+|++++|+.
T Consensus 425 p~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~i 504 (679)
T PRK05580 425 PECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGV 504 (679)
T ss_pred CCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEE
Confidence 2456788888876 678999999986 467899999999 67899999999999999999999976
Q ss_pred ecCC--CC----------HHHHHHHhcccccCCCcceEEEEeecCchhHHHH
Q 045757 498 ADFA--TS----------AVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDT 537 (548)
Q Consensus 498 ~~~p--~s----------~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~ 537 (548)
+|.. .+ ...|.|++||+||.+..|.+++.....+...+..
T Consensus 505 l~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 505 LDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred EcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 6543 22 3679999999999999999997766555444433
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=7.4e-29 Score=247.29 Aligned_cols=317 Identities=16% Similarity=0.221 Sum_probs=242.3
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 90 GLSDRLIRAL-ENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 90 ~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
..+..+.+.+ ..+.| .+|..|++++.-|... .+=+++|..|||||+++++.++..+-
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------------- 309 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------------- 309 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------------
Confidence 3444555544 67787 7999999999988754 46799999999999999999998874
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhh
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKR 232 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~ 232 (548)
.|..+..++||--|+.|-++.+.+++...| +++..++|..+-. .+..+|+|+|..-+.+-+.
T Consensus 310 --~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~---i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~--- 381 (677)
T COG1200 310 --AGYQAALMAPTEILAEQHYESLRKWLEPLG---IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE--- 381 (677)
T ss_pred --cCCeeEEeccHHHHHHHHHHHHHHHhhhcC---CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee---
Confidence 367999999999999999999999999888 8899999986543 4679999999987765553
Q ss_pred hhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcc
Q 045757 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYIS 312 (548)
Q Consensus 233 ~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (548)
+.++.++|+||-|+. +-.-...+..
T Consensus 382 ------F~~LgLVIiDEQHRF-----GV~QR~~L~~-------------------------------------------- 406 (677)
T COG1200 382 ------FHNLGLVIIDEQHRF-----GVHQRLALRE-------------------------------------------- 406 (677)
T ss_pred ------ecceeEEEEeccccc-----cHHHHHHHHH--------------------------------------------
Confidence 778999999999984 3222222211
Q ss_pred cCCCCCCCCCccccccccccCcccchhhHHHHhhhcc-cceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC
Q 045757 313 DEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR-SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN 391 (548)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 391 (548)
... .+..+.||||+- .+.++.....+ ......+......
T Consensus 407 ----------------------------------KG~~~Ph~LvMTATPI--PRTLAlt~fgD----ldvS~IdElP~GR 446 (677)
T COG1200 407 ----------------------------------KGEQNPHVLVMTATPI--PRTLALTAFGD----LDVSIIDELPPGR 446 (677)
T ss_pred ----------------------------------hCCCCCcEEEEeCCCc--hHHHHHHHhcc----ccchhhccCCCCC
Confidence 012 477899999973 23444333332 2222233333333
Q ss_pred cccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHH--------HHHHHHHHHc--CCceEEecCCCCHH
Q 045757 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAV--------YAVTKILKTA--GIECYCYHKDLSLE 461 (548)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~--------~~l~~~L~~~--~~~~~~~~~~~~~~ 461 (548)
..+.-.++. ..+...+++.+.+.+ ..+.++.|.|+-+++. ..+++.|+.. +..+..+||.|...
T Consensus 447 kpI~T~~i~---~~~~~~v~e~i~~ei---~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~ 520 (677)
T COG1200 447 KPITTVVIP---HERRPEVYERIREEI---AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPA 520 (677)
T ss_pred CceEEEEec---cccHHHHHHHHHHHH---HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChH
Confidence 334433333 356667777777665 4688999999977644 4556666644 45699999999999
Q ss_pred HHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecC-CCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 462 ERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADF-ATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 462 ~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~-p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
|+.+++.+|+ ++.+|||||.+.+.|||+|+++++|..++ ....+++-|-.||+||.+....|++++.+..
T Consensus 521 eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 521 EKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999 67899999999999999999999998886 5789999999999999999999999999876
No 86
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=261.56 Aligned_cols=359 Identities=18% Similarity=0.226 Sum_probs=254.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 045757 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP 168 (548)
Q Consensus 90 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
.++.+-..++. |...+..+|....++.+.+ .|+++|||||+|||-.+++-+++.+-.++... ........+
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d------gs~nl~~fK 366 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED------GSVNLAPFK 366 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc------cceecccce
Confidence 45555444443 4556999999999998877 79999999999999999999999986653211 111123458
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 169 ~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
++|++|.++|++.++..+.+.....| +.|.-.+|+.... ..+..|+|||||+.--.-.+.. . ....+-++++
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~G---I~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~g-d-raY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPLG---ITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSG-D-RAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhccccC---cEEEEecccccchhhhhhcceeEEeccchhhhhhcccC-c-hhHHHHHHHH
Confidence 99999999999999999988888888 9999999996643 5678999999999733332211 1 1234458899
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||.| |+...++..++.+..+..-.
T Consensus 442 IIDEIH-LLhDdRGpvLESIVaRt~r~----------------------------------------------------- 467 (1674)
T KOG0951|consen 442 IIDEIH-LLHDDRGPVLESIVARTFRR----------------------------------------------------- 467 (1674)
T ss_pred hhhhhh-hcccccchHHHHHHHHHHHH-----------------------------------------------------
Confidence 999999 45677888888877554310
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecch-
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD- 404 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 404 (548)
...-......+++|||+|...+ ...++....+........ +....+.+.++.+...
T Consensus 468 ------------------ses~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~s---yRpvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 468 ------------------SESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSS---YRPVPLKQQYIGITEKK 524 (1674)
T ss_pred ------------------hhhcccCceeeeecccCCchhh--hHHHhccCcccccccCcc---cCcCCccceEeccccCC
Confidence 0011235789999999985433 223333222222222222 2333455555555433
Q ss_pred --hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-----------------------------------
Q 045757 405 --TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----------------------------------- 447 (548)
Q Consensus 405 --~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------------- 447 (548)
.+...+-+.+.+.+-.+...+++|||+.+++++-..|+.++..
T Consensus 525 ~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 3344444454444433455689999999999999988888732
Q ss_pred --CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEE----EecC------CCCHHHHHHHhccc
Q 045757 448 --GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVI----QADF------ATSAVDFLHRVGRT 514 (548)
Q Consensus 448 --~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI----~~~~------p~s~~~~~Qr~GR~ 514 (548)
.+.++.||++|+..+|....+.|+ +..+|+|+|..++.|+|+|+-+++| .||+ +.++.+.+||.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 456899999999999999999999 6679999999999999999777666 2443 46899999999999
Q ss_pred ccCCC--cceEEEEeecCchhHHHHH
Q 045757 515 ARAGQ--YGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 515 gR~g~--~G~~i~~~~~~~~~~~~~i 538 (548)
||.+- .|..++.-...++.+...+
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHh
Confidence 99764 3777777666666655443
No 87
>COG4889 Predicted helicase [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=266.00 Aligned_cols=384 Identities=18% Similarity=0.194 Sum_probs=259.9
Q ss_pred cccccCCCCCCCCCCcccccccccCCCCCcccccccccccccCCCCCCceeecCCCcccccCCCHHHHHHHHHCCCCCCc
Q 045757 29 SSCLSNSAPSSFYPLRVRFLRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPS 108 (548)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~ 108 (548)
..+|..+++++.|..++.+++.+ |..++..+........-... .+...+...+|+.+.- .++..++.-..-.+|+
T Consensus 89 i~sF~t~lgkt~f~~gliiSTtd-w~sNA~~aieq~~~~~~~Ig---lsei~es~IDW~~f~p-~e~~~nl~l~~~kk~R 163 (1518)
T COG4889 89 IDSFFTALGKTGFKNGLIISTTD-WTSNAEKAIEQQRSPGMRIG---LSEIAESPIDWDIFDP-TELQDNLPLKKPKKPR 163 (1518)
T ss_pred ccHHHHHhccccccCceEEEecc-cchhHHHHHHhhhCccceec---HHHHhcCCCChhhcCc-cccccccccCCCCCCC
Confidence 34577788888999999999999 99988876665544433332 4556667778887644 4555556555667899
Q ss_pred HHHHhhhhcccCC----CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 109 IVQAASVGPVLSG----KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 109 ~~Q~~~i~~i~~g----~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
|+|+.|+....+| ...-+.|.||+|||++ .|-+.+.+. ..++|+|+|+++|..|..+
T Consensus 164 ~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala------------------~~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 164 PHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALA------------------AARILFLVPSISLLSQTLR 224 (1518)
T ss_pred hhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHh------------------hhheEeecchHHHHHHHHH
Confidence 9999999888765 5788899999999999 456777763 3689999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccC-------------------------------CCCcEEEeChHHHHhhcChhhh
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPI-------------------------------GKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
+|.+-.... ++..++|++.+..+ .+.-|+++|++.+...-..+.
T Consensus 225 ew~~~~~l~----~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe- 299 (1518)
T COG4889 225 EWTAQKELD----FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE- 299 (1518)
T ss_pred HHhhccCcc----ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH-
Confidence 998764332 88999999876542 346799999999977765544
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
..+..+++||+||||+-.
T Consensus 300 ---~G~~~fDliicDEAHRTt----------------------------------------------------------- 317 (1518)
T COG4889 300 ---AGLDEFDLIICDEAHRTT----------------------------------------------------------- 317 (1518)
T ss_pred ---cCCCCccEEEecchhccc-----------------------------------------------------------
Confidence 348889999999999832
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchh-------------------------
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA------------------------- 368 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~------------------------- 368 (548)
+.+.++...+.+.+.+...+....+.++|+||+....+..-
T Consensus 318 --------------Ga~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 318 --------------GATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred --------------cceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 22222222333333333334445667788888764332110
Q ss_pred --------hhhhhhcCCCCcccccccccccCcc-c--ccceeeecchhhHHHHHHHHHHHhh----------ccCCCCcE
Q 045757 369 --------GAVLKQMFPDADWISGNYLHFHNPR-L--KEKWIEVTVDTQVDALIEAVKERLE----------FGAETSRT 427 (548)
Q Consensus 369 --------~~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~l~~~~~----------~~~~~~~~ 427 (548)
..++.++......+........... + ...........++..++..+.+.-. ...+..++
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 0011111100000000000000000 0 0001112223355556666555421 12345689
Q ss_pred EEEeCChhHHHHHHHHHHHc---------------CCceEEecCCCCHHHHHHHHHh---hc-cCCcEEEEeCcccccCC
Q 045757 428 MVFANTVDAVYAVTKILKTA---------------GIECYCYHKDLSLEERAKTLVN---FQ-EKGGVFVCTDAAARGID 488 (548)
Q Consensus 428 lVF~~s~~~~~~l~~~L~~~---------------~~~~~~~~~~~~~~~r~~~~~~---f~-~~~~vLv~T~~~~~GiD 488 (548)
|-||.++++.+.+++.|... .+.+.+.+|.|+..+|...+.. |. +.++||-...++++|||
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 99999999999999888642 4567788899999999544432 23 46799999999999999
Q ss_pred CCCCCEEEEecCCCCHHHHHHHhcccccC
Q 045757 489 IPNVSHVIQADFATSAVDFLHRVGRTARA 517 (548)
Q Consensus 489 ip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 517 (548)
+|.++.||++++..++.+.+|.+||++|.
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999996
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.1e-28 Score=251.83 Aligned_cols=412 Identities=18% Similarity=0.214 Sum_probs=253.5
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCC
Q 045757 87 KSLGLSDRLIRALE-----NSGFGRP---SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158 (548)
Q Consensus 87 ~~l~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~ 158 (548)
+.+++..++.+.+. .+|+..| +|+|.++++.++.+++++++|+||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 35678888888876 5799998 999999999999999999999999999999999999887542
Q ss_pred CCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh
Q 045757 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR 233 (548)
Q Consensus 159 ~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~ 233 (548)
..++||+||++|+.|..+++..+....| +++.+++||.... ..+++|+|+||+++ .+++..+..
T Consensus 136 --------~~v~IVTpTrELA~Qdae~m~~L~k~lG---LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~ 204 (970)
T PRK12899 136 --------KPVHLVTVNDYLAQRDCEWVGSVLRWLG---LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSI 204 (970)
T ss_pred --------CCeEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCC
Confidence 3489999999999999999999998887 8999999987654 23699999999999 998865521
Q ss_pred hcc---ccccCeeEEEEecchhhcc----------------CChHHHHHHHHhhh-----------h-c-----------
Q 045757 234 RRM---EFVRGVKYVVFDEADMLLC----------------GSFQNQVIRLINMF-----------R-F----------- 271 (548)
Q Consensus 234 ~~~---~~~~~~~~vV~DEah~l~~----------------~~~~~~~~~i~~~l-----------~-~----------- 271 (548)
... ...+.+.++|+||||.|+- ...+..+...+..+ . .
T Consensus 205 ~~~~~~~vqr~~~~~IIDEADsmLiDEArTPLIISg~~~~~~~~Y~~~~~~V~~l~~~q~~~~~~~~~~a~~~~~~~~~~ 284 (970)
T PRK12899 205 ATRKEEQVGRGFYFAIIDEVDSILIDEARTPLIISGPGEKHNPVYFELKDKVAELVYLQRELCNRIALEARKVLDPFLDT 284 (970)
T ss_pred CcCHHHhhcccccEEEEechhhhhhhccCCceeeeCCCccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 100 0124678999999998752 11111111111111 0 0
Q ss_pred -----c-----------------------HHHHhhhcccCc--------------------------cccccc----CCC
Q 045757 272 -----D-----------------------EKQLSRMNESGV--------------------------EKPLEM----DNS 293 (548)
Q Consensus 272 -----~-----------------------~~~~~~~~~~~~--------------------------~~~~~~----~~~ 293 (548)
+ .+.+..+..... ..-... ...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vde~~~~v 364 (970)
T PRK12899 285 DILPKDKKVMEGISEACRSLWLVSKGMPLNRVLRRVREHPDLRAMIDKWDVYYHAEQNKEESLEKLSELYIIVDEHNNDF 364 (970)
T ss_pred ccccccccccchhhhhhhhhhhhhccccchhhhhhhhcccchhhhhhhhhhhhhhhhhhhhccccccCCceEEecCCCee
Confidence 0 000000000000 000000 000
Q ss_pred CCCCCCchhh--------hhh------------------------------------------------h--------hh
Q 045757 294 SLTQPDLQDE--------ENL------------------------------------------------Q--------DE 309 (548)
Q Consensus 294 ~~~~~~~~~~--------~~~------------------------------------------------~--------~~ 309 (548)
.++..+.... +.+ . ..
T Consensus 365 ~LTe~G~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~i~~aL~A~~lf~rd~d 444 (970)
T PRK12899 365 ELTDKGMQQWVEKAGGSAEDFVMMDMGHEYALIEEDETLSPADKINRKIAISEEDTQRKARAHGLRQLLRAHLLMEKDVD 444 (970)
T ss_pred eechhhHHHHhhhccCCHHHHhccchhhhhhccccccccCHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0000000000 000 0 00
Q ss_pred hcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchh
Q 045757 310 YISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA 368 (548)
Q Consensus 310 ~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~ 368 (548)
|+..++... +.. .+++++...+......-.++.+...| .+..+||.|.....
T Consensus 445 YiV~dg~V~IVDe~TGR~~~gr~~s~GLhQaiEaKE~v~i~~e~~t~a~It~qnfFr~Y---~kl~GmTGTa~~e~---- 517 (970)
T PRK12899 445 YIVRDDQIVIIDEHTGRPQPGRRFSEGLHQAIEAKEHVTIRKESQTFATVTLQNFFRLY---EKLAGMTGTAITES---- 517 (970)
T ss_pred EEEECCEEEEEeCCCCccCCCCCcchHHHHHHHhhcCCCCCCCceeeeeehHHHHHhhC---chhcccCCCCHHHH----
Confidence 111111000 000 00111111111111122233333333 47788888874221
Q ss_pred hhhhhhcCCC-CcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc
Q 045757 369 GAVLKQMFPD-ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA 447 (548)
Q Consensus 369 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 447 (548)
..+ ...+.. ...++... ..... .....+......+..++++.+.... ..+.++||-|.|+...+.++..|.+.
T Consensus 518 ~Ef-~~iY~l~v~~iPt~k-p~~r~-d~~d~iy~t~~~k~~ai~~ei~~~~---~~grPvLigt~si~~se~ls~~L~~~ 591 (970)
T PRK12899 518 REF-KEIYNLYVLQVPTFK-PCLRI-DHNDEFYMTEREKYHAIVAEIASIH---RKGNPILIGTESVEVSEKLSRILRQN 591 (970)
T ss_pred HHH-HHHhCCCEEECCCCC-Cceee-eCCCcEecCHHHHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 222 222211 11111111 11111 1112345555677777777776653 56889999999999999999999999
Q ss_pred CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCC--------CCEEEEecCCCCHHHHHHHhcccccCCC
Q 045757 448 GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPN--------VSHVIQADFATSAVDFLHRVGRTARAGQ 519 (548)
Q Consensus 448 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~--------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 519 (548)
|+....+++.-...| .+++..-.....|.|||.+++||.||.- ==|||....+.|..--.|-.||+||.|.
T Consensus 592 gi~h~vLNak~~~~E-a~iia~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGd 670 (970)
T PRK12899 592 RIEHTVLNAKNHAQE-AEIIAGAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGD 670 (970)
T ss_pred CCcceecccchhhhH-HHHHHhcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCC
Confidence 999988888733222 2344333344599999999999999952 2378888899999999999999999999
Q ss_pred cceEEEEeecCch
Q 045757 520 YGLVTSLYTESNR 532 (548)
Q Consensus 520 ~G~~i~~~~~~~~ 532 (548)
+|.+..|++-.|.
T Consensus 671 pGss~f~lSlEDd 683 (970)
T PRK12899 671 PGAAKFFLSFEDR 683 (970)
T ss_pred CCceeEEEEcchH
Confidence 9999999888764
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1e-28 Score=256.93 Aligned_cols=392 Identities=15% Similarity=0.145 Sum_probs=247.4
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|. .|++.|.-.--.+. +.-|..|+||+|||++|.+|++..++. +..++|++||++||.|
T Consensus 79 lg~-~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~-----------------G~~V~VvTpn~yLA~q 138 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS-----------------GRGVHIVTVNDYLAKR 138 (896)
T ss_pred cCC-CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc-----------------CCCEEEEcCCHHHHHH
Confidence 454 56666655444443 456999999999999999999987753 3569999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhhcc--ccccCeeEEEEecchhhc
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRRRM--EFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~~~--~~~~~~~~vV~DEah~l~ 254 (548)
..+++..+....| +.+.++.|+.... ...+||+|+||+.| .+++........ .....+.++|+||||.++
T Consensus 139 d~e~m~~l~~~lG---Ltv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 139 DSQWMKPIYEFLG---LTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred HHHHHHHHhcccC---ceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999999888 8999999986543 34689999999999 888865421110 113579999999999875
Q ss_pred -c---------------CChHHHHHHHHhhhhccHHHH--hhhcccCcccccccCC-------------CCCC-CCCchh
Q 045757 255 -C---------------GSFQNQVIRLINMFRFDEKQL--SRMNESGVEKPLEMDN-------------SSLT-QPDLQD 302 (548)
Q Consensus 255 -~---------------~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~ 302 (548)
+ ...+..+..++..+....... .............+.. ..+. ...+.+
T Consensus 216 IDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~ 295 (896)
T PRK13104 216 IDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYH 295 (896)
T ss_pred hhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccC
Confidence 1 112333344444443210000 0000000000000000 0000 000110
Q ss_pred ---------hhhhhhh---hcccCCCCCCCC---------------------------CccccccccccCcccchhhHHH
Q 045757 303 ---------EENLQDE---YISDEGNFEGDS---------------------------DVEGLTEETKSGSIKKKDWRRV 343 (548)
Q Consensus 303 ---------~~~~~~~---~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 343 (548)
....... +..+......+. .+++++...++...-+-.++.+
T Consensus 296 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~ 375 (896)
T PRK13104 296 ASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNF 375 (896)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHH
Confidence 0000000 000111111111 0111111222222222234444
Q ss_pred HhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc---ccceeeecchhhHHHHHHHHHHHhhc
Q 045757 344 RKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEF 420 (548)
Q Consensus 344 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~ 420 (548)
...| .+..+||.|..... ..+..-|.-....++ .+.+.. ....+......|..++++.+....
T Consensus 376 Fr~Y---~kLsGMTGTa~te~----~Ef~~iY~l~Vv~IP-----tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~-- 441 (896)
T PRK13104 376 FRMY---NKLSGMTGTADTEA----YEFQQIYNLEVVVIP-----TNRSMIRKDEADLVYLTQADKFQAIIEDVRECG-- 441 (896)
T ss_pred HHhc---chhccCCCCChhHH----HHHHHHhCCCEEECC-----CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--
Confidence 4443 46788888874322 222222211122221 111211 223456667778888888776653
Q ss_pred cCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCC---------
Q 045757 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPN--------- 491 (548)
Q Consensus 421 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~--------- 491 (548)
..+.++||||+|+..++.+++.|.+.|+.+..+|+++...|+..+.+.|+.+ .|+|||++++||+||.-
T Consensus 442 -~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~VtIATNmAGRGtDI~Lggn~~~~~~ 519 (896)
T PRK13104 442 -VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-AVTIATNMAGRGTDIVLGGSLAADLA 519 (896)
T ss_pred -hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-cEEEeccCccCCcceecCCchhhhhh
Confidence 5789999999999999999999999999999999999999999999999955 49999999999999951
Q ss_pred -----------------------------CCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 492 -----------------------------VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 492 -----------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
==|||-...+.|..-=.|-.||+||.|.+|.+-.|++-+|.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 520 NLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12688888889999999999999999999999988888764
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.2e-28 Score=253.32 Aligned_cols=393 Identities=19% Similarity=0.208 Sum_probs=244.7
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
..|+ .|++.|.-+.-.+.+|+ |..+.||+|||+++.+|++..... +..+-+++||.-|+.
T Consensus 76 ~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------------G~~v~vvT~neyLA~ 135 (796)
T PRK12906 76 VLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----------------GKGVHVVTVNEYLSS 135 (796)
T ss_pred HhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------------CCCeEEEeccHHHHH
Confidence 3465 78899988777666665 999999999999999999887754 578999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhh--ccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRR--RMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~--~~~~~~~~~~vV~DEah~l 253 (548)
|-++++..+....| +.+.++.++.... ...+||+++|...+ .+.|...-.. .....+.+.+.|+||+|.+
T Consensus 136 Rd~e~~~~~~~~LG---l~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 136 RDATEMGELYRWLG---LTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred hhHHHHHHHHHhcC---CeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 99999999999998 8999888775432 35789999998766 3333322100 0112456889999999977
Q ss_pred c-cC---------------ChHHHHHHHHhhhhccHHHH-------hhhcccCcccccccC------------CCCCCCC
Q 045757 254 L-CG---------------SFQNQVIRLINMFRFDEKQL-------SRMNESGVEKPLEMD------------NSSLTQP 298 (548)
Q Consensus 254 ~-~~---------------~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~~~~------------~~~~~~~ 298 (548)
+ +. .....+..+...+....... ...........+.+. ...+...
T Consensus 213 LiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~ 292 (796)
T PRK12906 213 LIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDS 292 (796)
T ss_pred eeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCc
Confidence 4 11 12233344444433221000 000000000000000 0000000
Q ss_pred -Cc---hhhhh-hh--------hhhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHH
Q 045757 299 -DL---QDEEN-LQ--------DEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVR 344 (548)
Q Consensus 299 -~~---~~~~~-~~--------~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 344 (548)
.. ..... +. ..|+-..++.. +.. .++++.-..++.....-.++.+.
T Consensus 293 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfF 372 (796)
T PRK12906 293 ENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFF 372 (796)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHH
Confidence 00 00000 00 01111111100 000 01111112222222233344444
Q ss_pred hhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc---cceeeecchhhHHHHHHHHHHHhhcc
Q 045757 345 KNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK---EKWIEVTVDTQVDALIEAVKERLEFG 421 (548)
Q Consensus 345 ~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~ 421 (548)
..| .++.+||.|..... ..+.+-|.-....++ .+.+... ...+......|...+.+.+....
T Consensus 373 r~Y---~kl~GmTGTa~~e~----~Ef~~iY~l~vv~IP-----tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~--- 437 (796)
T PRK12906 373 RMY---KKLSGMTGTAKTEE----EEFREIYNMEVITIP-----TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH--- 437 (796)
T ss_pred Hhc---chhhccCCCCHHHH----HHHHHHhCCCEEEcC-----CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH---
Confidence 444 36788888874221 122221111111221 1122221 22345556677888887776542
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCC---CCC-----
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP---NVS----- 493 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip---~v~----- 493 (548)
..+.++||||+|+..++.+++.|.+.++.+..+|+++...|+..+..+++. ..|+|||++++||+||+ +|.
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~-g~VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR-GAVTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC-ceEEEEeccccCCCCCCCCcchhhhCCc
Confidence 578999999999999999999999999999999999886666666555542 24999999999999994 899
Q ss_pred EEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 494 HVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 494 ~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
|||+++.|.|...|.|+.||+||.|.+|.+..|++.+|.
T Consensus 517 hVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 517 AVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred EEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999999999999999999998753
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=7.5e-28 Score=256.04 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=199.1
Q ss_pred CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 104 ~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
...|+|+|..+......++.+++.||||+|||.++++.+. .+... .....++|.+||+++++|++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~--------------~~~~gi~~aLPT~Atan~m~ 348 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ--------------GLADSIIFALPTQATANAML 348 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh--------------CCCCeEEEECcHHHHHHHHH
Confidence 3479999998865544567889999999999999766554 44332 12468999999999999999
Q ss_pred HHHHHhhcccCCCcEEEEEEeCCCCcc------------------------------CC---CCcEEEeChHHHHhhcCh
Q 045757 184 RMANALSADNGEPLVRAVAVCGGQGWP------------------------------IG---KPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~~~------------------------------~~---~~~Ilv~Tp~~l~~~l~~ 230 (548)
+.+.++....-. ...+...+|..... .+ -.+|+|||...++.....
T Consensus 349 ~Rl~~~~~~~f~-~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~ 427 (878)
T PRK09694 349 SRLEALASKLFP-SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLP 427 (878)
T ss_pred HHHHHHHHHhcC-CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHc
Confidence 988765443211 12455555543210 01 168999999888644332
Q ss_pred hhhhcccccc-CeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhh
Q 045757 231 KRRRRMEFVR-GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDE 309 (548)
Q Consensus 231 ~~~~~~~~~~-~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (548)
.+....-.+. .-++|||||+|.+ +......+..+++.+.
T Consensus 428 ~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~--------------------------------------- 467 (878)
T PRK09694 428 VKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA--------------------------------------- 467 (878)
T ss_pred cchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---------------------------------------
Confidence 2211111111 2358999999976 3333334455544332
Q ss_pred hcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhh--------cCCCCcc
Q 045757 310 YISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ--------MFPDADW 381 (548)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~--------~~~~~~~ 381 (548)
.....+|+||||+|...+......... .++....
T Consensus 468 --------------------------------------~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~ 509 (878)
T PRK09694 468 --------------------------------------QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITW 509 (878)
T ss_pred --------------------------------------hcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccc
Confidence 124679999999985443222111110 0010000
Q ss_pred cccc---cc--cccCc-ccccceeeec-----chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC--
Q 045757 382 ISGN---YL--HFHNP-RLKEKWIEVT-----VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG-- 448 (548)
Q Consensus 382 ~~~~---~~--~~~~~-~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-- 448 (548)
.... .. ..+.. ......+.+. .......+++.+.+.. ..+++++||||+++.++.+++.|++.+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~---~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~ 586 (878)
T PRK09694 510 RGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA---NAGAQVCLICNLVDDAQKLYQRLKELNNT 586 (878)
T ss_pred cccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHHHHHHHhhCCC
Confidence 0000 00 00000 0011111111 1111233444444332 357899999999999999999999865
Q ss_pred -CceEEecCCCCHHHHH----HHHHhh-c-cC---CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCC
Q 045757 449 -IECYCYHKDLSLEERA----KTLVNF-Q-EK---GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518 (548)
Q Consensus 449 -~~~~~~~~~~~~~~r~----~~~~~f-~-~~---~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 518 (548)
..+..+|+.++..+|. ++++.| + ++ ..|||||+++++|+|+ +++++|....| ...++||+||++|.+
T Consensus 587 ~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 587 QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 5799999999999994 567788 4 33 3799999999999999 68999998888 789999999999987
Q ss_pred C
Q 045757 519 Q 519 (548)
Q Consensus 519 ~ 519 (548)
.
T Consensus 664 ~ 664 (878)
T PRK09694 664 R 664 (878)
T ss_pred C
Confidence 6
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.5e-28 Score=252.84 Aligned_cols=389 Identities=21% Similarity=0.245 Sum_probs=248.1
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
+|+ .|++.|.-..-.+.+| -|..+.||+|||+++.+|++...+. +..+-|++||..||.|
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-----------------G~~V~IvTpn~yLA~r 137 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT-----------------GKGVHVVTVNDYLAKR 137 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc-----------------CCCEEEEecCHHHHHH
Confidence 565 7888888777666665 4999999999999999999744433 3457899999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhhc--cccccCeeEEEEecchhhc
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRRR--MEFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~~--~~~~~~~~~vV~DEah~l~ 254 (548)
.++++..+....| +.+.++.|+.+.. ...++|+++||..+ .+++....... ....+.+.++|+||||.++
T Consensus 138 d~e~~~~l~~~LG---lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 138 DAEWMGPLYEFLG---LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHHHHHHhhcC---CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999999988 8999999886543 23589999999999 88885543111 1125679999999999874
Q ss_pred -c---------------CChHHHHHHHHhhhhccHHHHh-------hhcccCcccccc-cCCCCCCCCCchhh---hh--
Q 045757 255 -C---------------GSFQNQVIRLINMFRFDEKQLS-------RMNESGVEKPLE-MDNSSLTQPDLQDE---EN-- 305 (548)
Q Consensus 255 -~---------------~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~-- 305 (548)
+ ...+..+..+...+........ .+.......... +....+. +..+. ..
T Consensus 215 IDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly--~~~~~~~~~~i~ 292 (830)
T PRK12904 215 IDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLY--DPENIALVHHLN 292 (830)
T ss_pred eccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCcccc--ChhhhHHHHHHH
Confidence 1 1233344444444422100000 000000000000 0000000 00000 00
Q ss_pred --hhh--------hhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccceeE
Q 045757 306 --LQD--------EYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354 (548)
Q Consensus 306 --~~~--------~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v 354 (548)
+.. .|+-..++.. +.. .+++++-..++.....-.++.+...| .+..
T Consensus 293 ~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y---~kl~ 369 (830)
T PRK12904 293 QALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMY---EKLA 369 (830)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhc---chhc
Confidence 000 1111111100 000 01111112222222222344444444 3678
Q ss_pred EEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc---cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 045757 355 FVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK---EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFA 431 (548)
Q Consensus 355 ~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~ 431 (548)
+||.|.... ...+.+-|.-....++. +.+... ...+......|...+.+.+.+.. ..+.++||||
T Consensus 370 GmTGTa~te----~~E~~~iY~l~vv~IPt-----nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~---~~grpVLIft 437 (830)
T PRK12904 370 GMTGTADTE----AEEFREIYNLDVVVIPT-----NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH---KKGQPVLVGT 437 (830)
T ss_pred ccCCCcHHH----HHHHHHHhCCCEEEcCC-----CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH---hcCCCEEEEe
Confidence 888888422 12222222212222221 112211 22455566778888888886542 4678999999
Q ss_pred CChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhcc-CCcEEEEeCcccccCCCCCC------------------
Q 045757 432 NTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-KGGVFVCTDAAARGIDIPNV------------------ 492 (548)
Q Consensus 432 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~vLv~T~~~~~GiDip~v------------------ 492 (548)
+|+..++.+++.|.+.++.+..+|+. ..+|...+..|++ ...|+|||++++||+||+--
T Consensus 438 ~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~ 515 (830)
T PRK12904 438 VSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQ 515 (830)
T ss_pred CcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHH
Confidence 99999999999999999999999996 7899999999995 56999999999999999632
Q ss_pred --------------------CEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 493 --------------------SHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 493 --------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
=|||....+.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 516 ~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 516 IAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2788888899999999999999999999999999888764
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.3e-27 Score=243.81 Aligned_cols=291 Identities=21% Similarity=0.228 Sum_probs=187.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEe
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (548)
++.|+||||||.+|+..+...+ .. +..+||++|+++|+.|+++.+++... .++..++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----------------g~~vLvlvP~i~L~~Q~~~~l~~~f~------~~v~vlh 57 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----------------GKSVLVLVPEIALTPQMIQRFKYRFG------SQVAVLH 57 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----------------CCeEEEEeCcHHHHHHHHHHHHHHhC------CcEEEEE
Confidence 4689999999999866554443 32 56899999999999999999987542 4566677
Q ss_pred CCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHH
Q 045757 205 GGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEK 274 (548)
Q Consensus 205 g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~ 274 (548)
|+.... .+..+|+|+|+..+. ..+.++++||+||+|...-+.... . +
T Consensus 58 s~~~~~er~~~~~~~~~g~~~IVVGTrsalf-----------~p~~~l~lIIVDEeh~~sykq~~~-p-------~---- 114 (505)
T TIGR00595 58 SGLSDSEKLQAWRKVKNGEILVVIGTRSALF-----------LPFKNLGLIIVDEEHDSSYKQEEG-P-------R---- 114 (505)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEECChHHHc-----------CcccCCCEEEEECCCccccccccC-C-------C----
Confidence 765432 356899999998773 236789999999999754221100 0 0
Q ss_pred HHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeE
Q 045757 275 QLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v 354 (548)
...+++..++.. ..+.+++
T Consensus 115 ------------------------------------------------------------y~ar~~a~~ra~-~~~~~vi 133 (505)
T TIGR00595 115 ------------------------------------------------------------YHARDVAVYRAK-KFNCPVV 133 (505)
T ss_pred ------------------------------------------------------------CcHHHHHHHHHH-hcCCCEE
Confidence 000001111111 1357899
Q ss_pred EEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecch----hhHHHHHHHHHHHhhccCCCCcEEEE
Q 045757 355 FVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD----TQVDALIEAVKERLEFGAETSRTMVF 430 (548)
Q Consensus 355 ~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~lVF 430 (548)
++|||+..... ......... ...+.........+ ....+..... .-...+++.+.+.+ ..++++|||
T Consensus 134 l~SATPsles~---~~~~~g~~~-~~~l~~r~~~~~~p--~v~vid~~~~~~~~~ls~~l~~~i~~~l---~~g~qvLvf 204 (505)
T TIGR00595 134 LGSATPSLESY---HNAKQKAYR-LLVLTRRVSGRKPP--EVKLIDMRKEPRQSFLSPELITAIEQTL---AAGEQSILF 204 (505)
T ss_pred EEeCCCCHHHH---HHHhcCCeE-EeechhhhcCCCCC--eEEEEecccccccCCccHHHHHHHHHHH---HcCCcEEEE
Confidence 99999653211 111110000 00000000000001 1111111111 12245566666554 456789999
Q ss_pred eCChhH------------------------------------------------------------HHHHHHHHHHc--C
Q 045757 431 ANTVDA------------------------------------------------------------VYAVTKILKTA--G 448 (548)
Q Consensus 431 ~~s~~~------------------------------------------------------------~~~l~~~L~~~--~ 448 (548)
+|++.. .+++.+.|++. +
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~ 284 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPG 284 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCC
Confidence 877653 57888888887 6
Q ss_pred CceEEecCCCCHHHH--HHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC------------CHHHHHHHhcc
Q 045757 449 IECYCYHKDLSLEER--AKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT------------SAVDFLHRVGR 513 (548)
Q Consensus 449 ~~~~~~~~~~~~~~r--~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~------------s~~~~~Qr~GR 513 (548)
..+..+|++++..++ .++++.|+ ++.+|||+|+++++|+|+|+|++|+..|... ....|.|++||
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GR 364 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGR 364 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhc
Confidence 789999999987766 88999999 6779999999999999999999987555431 24678999999
Q ss_pred cccCCCcceEEEEeecCc
Q 045757 514 TARAGQYGLVTSLYTESN 531 (548)
Q Consensus 514 ~gR~g~~G~~i~~~~~~~ 531 (548)
+||.+..|.+++.....+
T Consensus 365 agR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 365 AGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred cCCCCCCCEEEEEeCCCC
Confidence 999999999986554443
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=247.12 Aligned_cols=314 Identities=19% Similarity=0.195 Sum_probs=223.3
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
..| .|-.+|++|+-.+..|.+++|+|+|.+|||+++..++...-. +..+++|-.|-++|.+|
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----------------h~TR~iYTSPIKALSNQ 355 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----------------HMTRTIYTSPIKALSNQ 355 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-----------------hccceEecchhhhhccc
Confidence 344 688999999999999999999999999999998766654432 25799999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
.++.++.-... +..++|+.... ....++|.|.|.|..++-.. .+.++++.+|||||+|-+-+..++-.
T Consensus 356 KfRDFk~tF~D-------vgLlTGDvqin-PeAsCLIMTTEILRsMLYrg----adliRDvE~VIFDEVHYiND~eRGvV 423 (1248)
T KOG0947|consen 356 KFRDFKETFGD-------VGLLTGDVQIN-PEASCLIMTTEILRSMLYRG----ADLIRDVEFVIFDEVHYINDVERGVV 423 (1248)
T ss_pred hHHHHHHhccc-------cceeecceeeC-CCcceEeehHHHHHHHHhcc----cchhhccceEEEeeeeeccccccccc
Confidence 99999877643 33667776553 35789999999999988544 45588999999999998888888888
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
++.++-+++
T Consensus 424 WEEViIMlP----------------------------------------------------------------------- 432 (1248)
T KOG0947|consen 424 WEEVIIMLP----------------------------------------------------------------------- 432 (1248)
T ss_pred ceeeeeecc-----------------------------------------------------------------------
Confidence 888888876
Q ss_pred HHHhhhcccceeEEEeeccCCCccchhhhhhhh-------------cCC-------CCccc----------c--------
Q 045757 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ-------------MFP-------DADWI----------S-------- 383 (548)
Q Consensus 342 ~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~-------------~~~-------~~~~~----------~-------- 383 (548)
+..++|++|||.|. ..+++.+.-.. +.+ ...+. .
T Consensus 433 -------~HV~~IlLSATVPN-~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 433 -------RHVNFILLSATVPN-TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred -------ccceEEEEeccCCC-hHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 56777777777763 22222222100 000 00000 0
Q ss_pred -------------------------cccccccCcccccceeeecch--hhHHHHHHHHHHHhhccCCCCcEEEEeCChhH
Q 045757 384 -------------------------GNYLHFHNPRLKEKWIEVTVD--TQVDALIEAVKERLEFGAETSRTMVFANTVDA 436 (548)
Q Consensus 384 -------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~ 436 (548)
+.....++.......+..... .....++..+.. ...-+++|||-+++.
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-----~~lLP~VvFvFSkkr 579 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-----KNLLPVVVFVFSKKR 579 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-----cccCceEEEEEcccc
Confidence 000000000000000000011 113334444433 345689999999999
Q ss_pred HHHHHHHHHHcC---------------------------------------CceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 437 VYAVTKILKTAG---------------------------------------IECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 437 ~~~l~~~L~~~~---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
|+..+++|.+.. -.++.|||++-+--+.-+.-.|. |=.+|
T Consensus 580 Cde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKV 659 (1248)
T KOG0947|consen 580 CDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKV 659 (1248)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEE
Confidence 999999997641 24789999999999999999998 45599
Q ss_pred EEEeCcccccCCCCCCCEEEEecCC---------CCHHHHHHHhcccccCCCc--ceEEEEeecC
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFA---------TSAVDFLHRVGRTARAGQY--GLVTSLYTES 530 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p---------~s~~~~~Qr~GR~gR~g~~--G~~i~~~~~~ 530 (548)
|+||.++++|||.|.-.+|+. ++. ..+..|.||+|||||.|-+ |.+++++...
T Consensus 660 LFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 660 LFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred EeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999999996666553 322 4688999999999999964 8899888776
No 95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.7e-29 Score=245.75 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=228.3
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
++-|+|..+|..+-++.+++|.|.|.+|||.++..+|...+.+ +.+++|-.|-++|.+|-+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------------kQRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------------KQRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------------cCeEEeeChhhhhcchhHHH
Confidence 6789999999999999999999999999999999888888754 47999999999999999999
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i 265 (548)
+..-. -.++..+|+...+ ..+..+|.|.+.|..++-... .-++.+.||||||+|-|-+..++-.++.-
T Consensus 192 l~~EF-------~DVGLMTGDVTIn-P~ASCLVMTTEILRsMLYRGS----EvmrEVaWVIFDEIHYMRDkERGVVWEET 259 (1041)
T KOG0948|consen 192 LLEEF-------KDVGLMTGDVTIN-PDASCLVMTTEILRSMLYRGS----EVMREVAWVIFDEIHYMRDKERGVVWEET 259 (1041)
T ss_pred HHHHh-------cccceeecceeeC-CCCceeeeHHHHHHHHHhccc----hHhheeeeEEeeeehhccccccceeeeee
Confidence 88765 3566677776554 346799999999998886543 33788999999999988777776666555
Q ss_pred HhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHh
Q 045757 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRK 345 (548)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (548)
+-.+
T Consensus 260 IIll---------------------------------------------------------------------------- 263 (1041)
T KOG0948|consen 260 IILL---------------------------------------------------------------------------- 263 (1041)
T ss_pred EEec----------------------------------------------------------------------------
Confidence 4444
Q ss_pred hhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccccee---------eecch-----hhHHHHH
Q 045757 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI---------EVTVD-----TQVDALI 411 (548)
Q Consensus 346 ~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-----~~~~~l~ 411 (548)
+...+++++|||+| +...++.+...--..-+..+ |.......+.|+.. .++.. ..+...+
T Consensus 264 --P~~vr~VFLSATiP-NA~qFAeWI~~ihkQPcHVV---YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 264 --PDNVRFVFLSATIP-NARQFAEWICHIHKQPCHVV---YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred --cccceEEEEeccCC-CHHHHHHHHHHHhcCCceEE---eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 35789999999998 56666666543211111111 11111122222211 11111 1122222
Q ss_pred HHHHHHhhc---------------------------------cCCCCcEEEEeCChhHHHHHHHHHHHcC----------
Q 045757 412 EAVKERLEF---------------------------------GAETSRTMVFANTVDAVYAVTKILKTAG---------- 448 (548)
Q Consensus 412 ~~l~~~~~~---------------------------------~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------- 448 (548)
..+.+.-.. .....++|||+-+++.|+.+|-.+.+..
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V 417 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV 417 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH
Confidence 222221100 0123489999999999999999987651
Q ss_pred -----------------------------CceEEecCCCCHHHHHHHHHhhccCC-cEEEEeCcccccCCCCCCCEEEEe
Q 045757 449 -----------------------------IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 449 -----------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~-~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
-.+..||+++-+--++.+.-.|.++. ++|+||.+++.|+|.|.-++|+-.
T Consensus 418 ~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~ 497 (1041)
T KOG0948|consen 418 ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTA 497 (1041)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEee
Confidence 24788999999999999999999665 999999999999999977766632
Q ss_pred ----c----CCCCHHHHHHHhcccccCCCc--ceEEEEeecC
Q 045757 499 ----D----FATSAVDFLHRVGRTARAGQY--GLVTSLYTES 530 (548)
Q Consensus 499 ----~----~p~s~~~~~Qr~GR~gR~g~~--G~~i~~~~~~ 530 (548)
| -..|.-.|+||.|||||.|.+ |.||+++++.
T Consensus 498 ~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 498 VRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 134778999999999999975 9999999886
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=2.6e-27 Score=259.13 Aligned_cols=315 Identities=18% Similarity=0.244 Sum_probs=190.2
Q ss_pred CCcHHHHhhhhccc----CC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 106 RPSIVQAASVGPVL----SG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.++++|.+|+..+. +| ++++++++||||||+++ +.++..++.. ....++|||+|+++|+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~--------------~~~~rVLfLvDR~~L~~ 477 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA--------------KRFRRILFLVDRSALGE 477 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc--------------CccCeEEEEecHHHHHH
Confidence 58999999997775 33 68999999999999984 4455555433 12468999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeC-CCCccCCCCcEEEeChHHHHhhcChhh-hhccccccCeeEEEEecchhhccC--
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCG-GQGWPIGKPDVIVSTPAALLNNIDPKR-RRRMEFVRGVKYVVFDEADMLLCG-- 256 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~~~~~vV~DEah~l~~~-- 256 (548)
|+.+.+..+....+.....+..+.+ +.........|+|+|++.+...+.... ......+..+++||+||||+-...
T Consensus 478 Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~ 557 (1123)
T PRK11448 478 QAEDAFKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDK 557 (1123)
T ss_pred HHHHHHHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccc
Confidence 9999998874322100001111111 111223457899999999976643221 111123677899999999984210
Q ss_pred -------C------hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCc
Q 045757 257 -------S------FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323 (548)
Q Consensus 257 -------~------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (548)
+ +......++..
T Consensus 558 ~~~~~~~~~~~~~~~~~~yr~iL~y------------------------------------------------------- 582 (1123)
T PRK11448 558 EMSEGELQFRDQLDYVSKYRRVLDY------------------------------------------------------- 582 (1123)
T ss_pred ccccchhccchhhhHHHHHHHHHhh-------------------------------------------------------
Confidence 0 01222222221
Q ss_pred cccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccccc-------------
Q 045757 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH------------- 390 (548)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------- 390 (548)
+ +...+++|||+......+.+.....+. ...-+..+++..+
T Consensus 583 -----------------------F--dA~~IGLTATP~r~t~~~FG~pv~~Ys-l~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 583 -----------------------F--DAVKIGLTATPALHTTEIFGEPVYTYS-YREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred -----------------------c--CccEEEEecCCccchhHHhCCeeEEee-HHHHHhcCCcccCcCCEEEEEEeccc
Confidence 1 134566677764322111111000000 0000000000000
Q ss_pred -----Cc-----------cc-----ccce--------eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHH
Q 045757 391 -----NP-----------RL-----KEKW--------IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVT 441 (548)
Q Consensus 391 -----~~-----------~~-----~~~~--------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~ 441 (548)
.. .+ .... ..+-.+.....+++.+.+++.. ..++++||||.++.+|+.++
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~-~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP-TGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc-cCCCcEEEEEcCHHHHHHHH
Confidence 00 00 0000 0000111222333334443322 23589999999999999999
Q ss_pred HHHHHc------C---CceEEecCCCCHHHHHHHHHhhc-cCC-cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHH
Q 045757 442 KILKTA------G---IECYCYHKDLSLEERAKTLVNFQ-EKG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHR 510 (548)
Q Consensus 442 ~~L~~~------~---~~~~~~~~~~~~~~r~~~~~~f~-~~~-~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr 510 (548)
+.|.+. + ..+..++|+++ ++.+++++|+ ++. +|+|+++++.+|+|+|.+++||++.++.|...|.||
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Qm 793 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQM 793 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHH
Confidence 988764 1 24566888875 5678999999 444 799999999999999999999999999999999999
Q ss_pred hcccccCCC
Q 045757 511 VGRTARAGQ 519 (548)
Q Consensus 511 ~GR~gR~g~ 519 (548)
+||+.|...
T Consensus 794 IGRgtR~~~ 802 (1123)
T PRK11448 794 LGRATRLCP 802 (1123)
T ss_pred HhhhccCCc
Confidence 999999643
No 97
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=5e-27 Score=214.80 Aligned_cols=166 Identities=34% Similarity=0.604 Sum_probs=141.9
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 045757 86 WKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPP 165 (548)
Q Consensus 86 ~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~ 165 (548)
|+++++++.+.+.+.++|+..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.... ...
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------------~~~ 68 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------------KKD 68 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------------ccC
Confidence 78899999999999999999999999999999999999999999999999999999999886541 124
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFV 239 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 239 (548)
++++||++|+++|+.|+.+.+..+....+ +.+..+.|+.... ..+++|+|+||+.+.+.+.... ..+
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~----~~~ 141 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTN---LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK----LDL 141 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC----CCh
Confidence 67899999999999999999999876655 7788888876642 2478999999999988876543 347
Q ss_pred cCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 240 RGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 240 ~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
.+++++|+||+|.+.+.++...+..+++.++
T Consensus 142 ~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~ 172 (203)
T cd00268 142 SKVKYLVLDEADRMLDMGFEDQIREILKLLP 172 (203)
T ss_pred hhCCEEEEeChHHhhccChHHHHHHHHHhCC
Confidence 7899999999999888888888877776553
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.6e-26 Score=206.12 Aligned_cols=315 Identities=15% Similarity=0.170 Sum_probs=211.1
Q ss_pred CCcHHHHhhhhccc----CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
++++.|+.+-..+. +.++.++.|-||+|||-. +...++..++. |.++.+..|.+..|.+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~----------------G~~vciASPRvDVclE 159 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ----------------GGRVCIASPRVDVCLE 159 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc----------------CCeEEEecCcccchHH
Confidence 68999998876665 458999999999999976 55666776665 8899999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
++..+++.... ..+.+++|+.+.... ..++|+|...|+..- +.++++|+||+|...-. -...
T Consensus 160 l~~Rlk~aF~~-----~~I~~Lyg~S~~~fr-~plvVaTtHQLlrFk-----------~aFD~liIDEVDAFP~~-~d~~ 221 (441)
T COG4098 160 LYPRLKQAFSN-----CDIDLLYGDSDSYFR-APLVVATTHQLLRFK-----------QAFDLLIIDEVDAFPFS-DDQS 221 (441)
T ss_pred HHHHHHHhhcc-----CCeeeEecCCchhcc-ccEEEEehHHHHHHH-----------hhccEEEEecccccccc-CCHH
Confidence 99999887754 567788888766555 778888888775433 35789999999964211 1111
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
+....+.-
T Consensus 222 L~~Av~~a------------------------------------------------------------------------ 229 (441)
T COG4098 222 LQYAVKKA------------------------------------------------------------------------ 229 (441)
T ss_pred HHHHHHHh------------------------------------------------------------------------
Confidence 11111111
Q ss_pred HHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhH------HHHHHHHH
Q 045757 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQV------DALIEAVK 415 (548)
Q Consensus 342 ~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~ 415 (548)
.....-.+++|||.+...+ ........ ....+...+-....+ +..+...-....++ ..+...+.
T Consensus 230 -----rk~~g~~IylTATp~k~l~---r~~~~g~~-~~~klp~RfH~~pLp-vPkf~w~~~~~k~l~r~kl~~kl~~~le 299 (441)
T COG4098 230 -----RKKEGATIYLTATPTKKLE---RKILKGNL-RILKLPARFHGKPLP-VPKFVWIGNWNKKLQRNKLPLKLKRWLE 299 (441)
T ss_pred -----hcccCceEEEecCChHHHH---HHhhhCCe-eEeecchhhcCCCCC-CCceEEeccHHHHhhhccCCHHHHHHHH
Confidence 1134567999999984322 22211100 000111111111111 11111111111111 24455555
Q ss_pred HHhhccCCCCcEEEEeCChhHHHHHHHHHHH-cCC-ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCC
Q 045757 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKT-AGI-ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNV 492 (548)
Q Consensus 416 ~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~-~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v 492 (548)
+.. ..+.+++||++++...+.++..|++ .+. .++..|+. ...|.+..++|| |+..+||+|.+++||+.+|+|
T Consensus 300 kq~---~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~v 374 (441)
T COG4098 300 KQR---KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNV 374 (441)
T ss_pred HHH---hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccc
Confidence 543 4678999999999999999999954 333 45777876 568999999999 667999999999999999999
Q ss_pred CEEEEecCC--CCHHHHHHHhcccccCCC--cceEEEEeecCchhHHHHHHHHH
Q 045757 493 SHVIQADFA--TSAVDFLHRVGRTARAGQ--YGLVTSLYTESNRDLVDTIRRAA 542 (548)
Q Consensus 493 ~~VI~~~~p--~s~~~~~Qr~GR~gR~g~--~G~~i~~~~~~~~~~~~~i~~~~ 542 (548)
++.+.-.-- .+.+.++|.+||+||.-. .|.++.|-.-......+++.+..
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk 428 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIK 428 (441)
T ss_pred eEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHH
Confidence 997765443 789999999999999643 48887666555555555444433
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.9e-26 Score=241.44 Aligned_cols=319 Identities=19% Similarity=0.171 Sum_probs=227.6
Q ss_pred HHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 98 ALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 98 ~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
.-...+| .|-++|++++..+.+|.+++++||||+|||++...++...+.. +.+++|..|.++
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----------------~qrviYTsPIKA 173 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----------------GQRVIYTSPIKA 173 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------CCceEeccchhh
Confidence 3356677 7999999999999999999999999999999988877776644 467999999999
Q ss_pred HHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC
Q 045757 178 LCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257 (548)
Q Consensus 178 L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~ 257 (548)
|.+|.++.+.+..... .-.+..++|+...+ .+..++|.|.|.|.+++... ...+.++.+|||||+|.+.+..
T Consensus 174 LsNQKyrdl~~~fgdv---~~~vGL~TGDv~IN-~~A~clvMTTEILRnMlyrg----~~~~~~i~~ViFDEvHyi~D~e 245 (1041)
T COG4581 174 LSNQKYRDLLAKFGDV---ADMVGLMTGDVSIN-PDAPCLVMTTEILRNMLYRG----SESLRDIEWVVFDEVHYIGDRE 245 (1041)
T ss_pred hhhhHHHHHHHHhhhh---hhhccceecceeeC-CCCceEEeeHHHHHHHhccC----cccccccceEEEEeeeeccccc
Confidence 9999999888766322 01335666666554 45678888889998888544 3457889999999999998888
Q ss_pred hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccc
Q 045757 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKK 337 (548)
Q Consensus 258 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (548)
.+-.++.++-+++
T Consensus 246 RG~VWEE~Ii~lP------------------------------------------------------------------- 258 (1041)
T COG4581 246 RGVVWEEVIILLP------------------------------------------------------------------- 258 (1041)
T ss_pred cchhHHHHHHhcC-------------------------------------------------------------------
Confidence 9988888887775
Q ss_pred hhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc------ee-eecchh-----
Q 045757 338 KDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK------WI-EVTVDT----- 405 (548)
Q Consensus 338 ~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~----- 405 (548)
...+++++|||++ +..++..++-..-......+..+... ..+.++ .+ .++...
T Consensus 259 -----------~~v~~v~LSATv~-N~~EF~~Wi~~~~~~~~~vv~t~~Rp---vPL~~~~~~~~~l~~lvde~~~~~~~ 323 (1041)
T COG4581 259 -----------DHVRFVFLSATVP-NAEEFAEWIQRVHSQPIHVVSTEHRP---VPLEHFVYVGKGLFDLVDEKKKFNAE 323 (1041)
T ss_pred -----------CCCcEEEEeCCCC-CHHHHHHHHHhccCCCeEEEeecCCC---CCeEEEEecCCceeeeecccccchhh
Confidence 5679999999997 44444444322111111111111000 000000 00 000000
Q ss_pred ------------------------------------------hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHH
Q 045757 406 ------------------------------------------QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443 (548)
Q Consensus 406 ------------------------------------------~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~ 443 (548)
+...++..+.. ...-++|+|+-++..|+..+.+
T Consensus 324 ~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-----~~~lP~I~F~FSr~~Ce~~a~~ 398 (1041)
T COG4581 324 NFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-----DNLLPAIVFSFSRRGCEEAAQI 398 (1041)
T ss_pred cchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-----hcCCceEEEEEchhhHHHHHHH
Confidence 00111222221 3456899999999999999988
Q ss_pred HHHc----------------------------CC-------------ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 444 LKTA----------------------------GI-------------ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 444 L~~~----------------------------~~-------------~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
+... ++ .++.||++|=+..|..+...|. |-.+|+++|.
T Consensus 399 ~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTe 478 (1041)
T COG4581 399 LSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATE 478 (1041)
T ss_pred hcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehh
Confidence 8532 11 2568999999999999999999 5569999999
Q ss_pred cccccCCCCCCCEEEEecC---------CCCHHHHHHHhcccccCCCc--ceEEEEeecC
Q 045757 482 AAARGIDIPNVSHVIQADF---------ATSAVDFLHRVGRTARAGQY--GLVTSLYTES 530 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~---------p~s~~~~~Qr~GR~gR~g~~--G~~i~~~~~~ 530 (548)
+++.|+|.|.-++|+ ..+ +.++..|.|+.|||||.|.+ |.++++-.+.
T Consensus 479 T~s~GiNmPartvv~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 479 TFAIGINMPARTVVF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred hhhhhcCCcccceee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999666555 332 46899999999999999986 8888774443
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.4e-25 Score=232.83 Aligned_cols=395 Identities=16% Similarity=0.142 Sum_probs=245.2
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|. .|++.|.-.--.+ .+.-|..++||.|||+++.+|++...+. +..|.||+|+..|+.|
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~-----------------g~~VhIvT~ndyLA~R 138 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT-----------------GKGVHVITVNDYLARR 138 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc-----------------CCCEEEEeCCHHHHHH
Confidence 454 5677776443333 4557999999999999999999887754 4559999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhhc--cccccCeeEEEEecchhhc
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRRR--MEFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~~--~~~~~~~~~vV~DEah~l~ 254 (548)
..+++..+....| +.+.++.++.+.. ...+||+++||+.+ .+++..+-... ....+.+.++|+||||.++
T Consensus 139 D~e~m~~l~~~lG---lsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 139 DAENNRPLFEFLG---LTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HHHHHHHHHHhcC---CeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9999999999988 8999888876533 34799999999999 78776541110 0113678999999999875
Q ss_pred cC----------------ChHHHHHHHHhhhhccHHHH-------hhhcccCcccccccC----------C---CCC-CC
Q 045757 255 CG----------------SFQNQVIRLINMFRFDEKQL-------SRMNESGVEKPLEMD----------N---SSL-TQ 297 (548)
Q Consensus 255 ~~----------------~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~~~~----------~---~~~-~~ 297 (548)
-. ..+..+..++..+......- .............+. . ..+ ..
T Consensus 216 iDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~ 295 (908)
T PRK13107 216 IDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEG 295 (908)
T ss_pred cccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCc
Confidence 21 12222333333332110000 000000000000000 0 000 00
Q ss_pred CCchhhhh---------h---------hhhhcccCCCCC-----------CCC----------CccccccccccCcccch
Q 045757 298 PDLQDEEN---------L---------QDEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKK 338 (548)
Q Consensus 298 ~~~~~~~~---------~---------~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~ 338 (548)
..+.+... . ...|+-..+... +.. .+++++...++.....-
T Consensus 296 ~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsI 375 (908)
T PRK13107 296 DSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASI 375 (908)
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeee
Confidence 00000000 0 001111111100 000 01111112222222222
Q ss_pred hhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHh
Q 045757 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERL 418 (548)
Q Consensus 339 ~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 418 (548)
.++.+...| .+..+||.|..... ..+.+-|.-....++... ..... -....+......|..++++.+....
T Consensus 376 T~QnfFr~Y---~kL~GMTGTa~te~----~Ef~~iY~l~Vv~IPTnk-p~~R~-d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 376 TFQNYFRQY---EKLAGMTGTADTEA----FEFQHIYGLDTVVVPTNR-PMVRK-DMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred hHHHHHHhh---hHhhcccCCChHHH----HHHHHHhCCCEEECCCCC-Cccce-eCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 344444444 36788888875322 222222211222221111 11111 1122355666788888888777653
Q ss_pred hccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCC-------
Q 045757 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPN------- 491 (548)
Q Consensus 419 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~------- 491 (548)
..+.++||||+|+..++.++..|...++.+..+|+++...|+..+.+.|+.+. |+|||++++||+||.-
T Consensus 447 ---~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmAGRGTDIkLggn~~~~ 522 (908)
T PRK13107 447 ---ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMAGRGTDIVLGGNWNME 522 (908)
T ss_pred ---HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCcCCCcceecCCchHHh
Confidence 56899999999999999999999999999999999999999999999998544 9999999999999951
Q ss_pred ------------------------------CCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 492 ------------------------------VSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 492 ------------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
==|||-...+.|..-=.|-.||+||.|.+|.+..|++-+|.
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 523 IEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 23788888899999999999999999999999999988764
No 101
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=6.5e-25 Score=231.34 Aligned_cols=326 Identities=17% Similarity=0.193 Sum_probs=231.8
Q ss_pred CCHHHHHHHH-HCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 91 LSDRLIRALE-NSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 91 l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+......+. .++| .-|+-|..||..+.+. .|=+|||..|-|||-+++=++...+++
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------------- 642 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------------- 642 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------------
Confidence 4445555554 3455 6799999999888743 588999999999999977766666643
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCC----------ccCCCCcEEEeChHHHHhhcChhhh
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG----------WPIGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
+..|.|||||.-||+|-++.++.-..+.+ +++..+.--.+ ...+..||||+|.--|...+
T Consensus 643 --GKQVAvLVPTTlLA~QHy~tFkeRF~~fP---V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv----- 712 (1139)
T COG1197 643 --GKQVAVLVPTTLLAQQHYETFKERFAGFP---VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDV----- 712 (1139)
T ss_pred --CCeEEEEcccHHhHHHHHHHHHHHhcCCC---eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCc-----
Confidence 68999999999999999999998887776 67766544332 22578999999987664333
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
-+.++.++|+||-|+. +-.-+.-++.++
T Consensus 713 ----~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr------------------------------------------- 740 (1139)
T COG1197 713 ----KFKDLGLLIIDEEQRF-----GVKHKEKLKELR------------------------------------------- 740 (1139)
T ss_pred ----EEecCCeEEEechhhc-----CccHHHHHHHHh-------------------------------------------
Confidence 2778999999999984 322223333332
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
.+.-++-+|||+-+..-.+...-+++ ...+.... ...-.
T Consensus 741 -----------------------------------~~VDvLTLSATPIPRTL~Msm~GiRd----lSvI~TPP--~~R~p 779 (1139)
T COG1197 741 -----------------------------------ANVDVLTLSATPIPRTLNMSLSGIRD----LSVIATPP--EDRLP 779 (1139)
T ss_pred -----------------------------------ccCcEEEeeCCCCcchHHHHHhcchh----hhhccCCC--CCCcc
Confidence 45678889999743322222222221 11111000 00111
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhc
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+.-++...+ ...+.+++...+ ..++.+....|.++..+.+++.|++. ...+.+.||.|+..+-++++..|-
T Consensus 780 V~T~V~~~d----~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~ 852 (1139)
T COG1197 780 VKTFVSEYD----DLLIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY 852 (1139)
T ss_pred eEEEEecCC----hHHHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH
Confidence 111222222 222233333332 45889999999999999999999987 345889999999999999999998
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCC-CCHHHHHHHhcccccCCCcceEEEEeecCc------hhHHHHHHHHH
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFA-TSAVDFLHRVGRTARAGQYGLVTSLYTESN------RDLVDTIRRAA 542 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p-~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~------~~~~~~i~~~~ 542 (548)
++.+|||||.+.+.|||||+++.+|..+.. ...+++.|..||+||.++.|-|+.+|.+.. .+.++.|+.+-
T Consensus 853 ~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~ 931 (1139)
T COG1197 853 NGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFT 931 (1139)
T ss_pred cCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhh
Confidence 677999999999999999999999988764 689999999999999999999999998643 45555555543
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=2.4e-25 Score=239.13 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=99.2
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC---CcEEEEeCcccccCCCCCCCEEEE
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK---GGVFVCTDAAARGIDIPNVSHVIQ 497 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~---~~vLv~T~~~~~GiDip~v~~VI~ 497 (548)
..+.++|||++.......|.++|...++.+..+||+++..+|..+++.|. .+ ..+|++|.+++.|||+..+++||+
T Consensus 485 ~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 485 ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 45789999999999999999999999999999999999999999999997 22 257899999999999999999999
Q ss_pred ecCCCCHHHHHHHhcccccCCCcce--EEEEeecCc
Q 045757 498 ADFATSAVDFLHRVGRTARAGQYGL--VTSLYTESN 531 (548)
Q Consensus 498 ~~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~ 531 (548)
||+++|+....|++||+.|.|+... ++.|++...
T Consensus 565 yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 565 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999999855 455666654
No 103
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.92 E-value=2.3e-22 Score=210.10 Aligned_cols=135 Identities=27% Similarity=0.403 Sum_probs=120.5
Q ss_pred chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 403 ~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
...+++.+++.+.... ..+.++||||++++.++.+++.|.+.|+.+..+|++++..+|.++++.|+ ++..|+|||+
T Consensus 424 ~~~qi~~Ll~eI~~~~---~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV---ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHH---cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 3456777777777654 45789999999999999999999999999999999999999999999999 7779999999
Q ss_pred cccccCCCCCCCEEEEec-----CCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 482 AAARGIDIPNVSHVIQAD-----FATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~-----~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
.+++|+|+|++++||++| .|.+..+|+||+||+||. ..|.++++++..+....+.|++.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999998 799999999999999998 68999999998876666666553
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.9e-23 Score=216.73 Aligned_cols=311 Identities=21% Similarity=0.237 Sum_probs=209.5
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
+....+.+.++.+++.++|+|+||+|||...-..+++.... .++.+.+.-|.+--+..+.+.+.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------------~~g~I~~tQPRRlAArsvA~RvA 115 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------------IAGKIGCTQPRRLAARSVAERVA 115 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------------cCCeEEecCchHHHHHHHHHHHH
Confidence 44445555666677889999999999998754445554431 35688899999977777765544
Q ss_pred -HhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh-hccCChH-HHHHH
Q 045757 188 -ALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM-LLCGSFQ-NQVIR 264 (548)
Q Consensus 188 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~-l~~~~~~-~~~~~ 264 (548)
.+....| -.|++..-..+....+..|-+.|.+.|...+..+. .++.+++||+||+|. -++..+. ..+..
T Consensus 116 eel~~~~G---~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~-----~Ls~ys~vIiDEaHERSl~tDilLgllk~ 187 (845)
T COG1643 116 EELGEKLG---ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDP-----LLSGYSVVIIDEAHERSLNTDILLGLLKD 187 (845)
T ss_pred HHhCCCcC---ceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCc-----ccccCCEEEEcchhhhhHHHHHHHHHHHH
Confidence 4443333 34444444444456678899999999998886553 388999999999994 2222211 11112
Q ss_pred HHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHH
Q 045757 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVR 344 (548)
Q Consensus 265 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (548)
++..
T Consensus 188 ~~~~---------------------------------------------------------------------------- 191 (845)
T COG1643 188 LLAR---------------------------------------------------------------------------- 191 (845)
T ss_pred HHhh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred hhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccce-eeecchh-hHHHHHHHHHHHhhccC
Q 045757 345 KNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKW-IEVTVDT-QVDALIEAVKERLEFGA 422 (548)
Q Consensus 345 ~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~l~~~~~~~~ 422 (548)
...+.++|.||||+.. ++ ++.++.+...+......+. +.-++ -....+. -...+...+..+. ..
T Consensus 192 --rr~DLKiIimSATld~--~r-----fs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~--~~ 257 (845)
T COG1643 192 --RRDDLKLIIMSATLDA--ER-----FSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHL--RE 257 (845)
T ss_pred --cCCCceEEEEecccCH--HH-----HHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhc--cC
Confidence 1235889999999852 22 2233333322222211111 11111 1111122 2233333333332 34
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHhhccC-CcEEEEeCcccccCCCCCCCEEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKT----AGIECYCYHKDLSLEERAKTLVNFQEK-GGVFVCTDAAARGIDIPNVSHVIQ 497 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~vLv~T~~~~~GiDip~v~~VI~ 497 (548)
..+.+|||.+...+.+.+++.|.+ ....+..+||.++.+++.++++--.++ .+|++||++++.+|.||++++||.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 588999999999999999999998 347899999999999999977666655 469999999999999999999997
Q ss_pred ecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 498 ADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 498 ~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
-+. |.|.++.-||.|||||. .+|.||-+|++++..
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 664 46889999999999998 589999999986544
No 105
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=2.4e-22 Score=219.60 Aligned_cols=421 Identities=15% Similarity=0.200 Sum_probs=225.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhh----cccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVG----PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR 166 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 166 (548)
+++.+.+.+...||+ ++|.|.+.+. .+.+++++++.||||+|||++|++|++.... . +
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------------~ 292 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------------E 292 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------------C
Confidence 344667777778884 8999998665 5567899999999999999999999987653 2 4
Q ss_pred CCEEEEcCcHHHHHHHHH-HHHHhhcccCCCcEEEEEEeCCCCcc-----------------------------------
Q 045757 167 APSLVLCPNVVLCEQVVR-MANALSADNGEPLVRAVAVCGGQGWP----------------------------------- 210 (548)
Q Consensus 167 ~~~Lil~Pt~~L~~q~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------- 210 (548)
.+++|.+||++|..|+.. .+..+.+..+.+ +++..+.|+.++.
T Consensus 293 ~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~-~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tG 371 (850)
T TIGR01407 293 KPVVISTNTKVLQSQLLEKDIPLLNEILNFK-INAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETG 371 (850)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHHHHcCCC-ceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCcc
Confidence 589999999999999865 555554433322 5666666654321
Q ss_pred ------------------------------------------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEe
Q 045757 211 ------------------------------------------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFD 248 (548)
Q Consensus 211 ------------------------------------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~D 248 (548)
...++|||+.+..|...+.... ..+.+.+++|||
T Consensus 372 D~~el~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~----~ilp~~~~lIiD 447 (850)
T TIGR01407 372 DLDELNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP----ELFPSFRDLIID 447 (850)
T ss_pred CHhhccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc----ccCCCCCEEEEE
Confidence 0148999999998877653321 124566899999
Q ss_pred cchhhccCC---h-----HHHHHHHHhhhhccH-H----HHhhhccc---CcccccccCC-------------------C
Q 045757 249 EADMLLCGS---F-----QNQVIRLINMFRFDE-K----QLSRMNES---GVEKPLEMDN-------------------S 293 (548)
Q Consensus 249 Eah~l~~~~---~-----~~~~~~i~~~l~~~~-~----~~~~~~~~---~~~~~~~~~~-------------------~ 293 (548)
|||++.+.- + ...+..++..+.... . .+...... .......... .
T Consensus 448 EAH~L~d~a~~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 527 (850)
T TIGR01407 448 EAHHLPDIAENQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFS 527 (850)
T ss_pred CcchHHHHHHHHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999985311 0 111222222221000 0 00000000 0000000000 0
Q ss_pred CCCCCCchhh----hhhhhhh--cccCCCCCCCCCcccccc---ccccCcccchhhH-HH-HhhhcccceeEEEeeccCC
Q 045757 294 SLTQPDLQDE----ENLQDEY--ISDEGNFEGDSDVEGLTE---ETKSGSIKKKDWR-RV-RKNYQRSKQYIFVAATLPI 362 (548)
Q Consensus 294 ~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~-~~~~~~~~q~v~~SAT~~~ 362 (548)
.......... ..+...+ +..........+.+.... ....-....-+.. .+ ...+.....+|++|||+..
T Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~ 607 (850)
T TIGR01407 528 ELSHKTVDQLRKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKF 607 (850)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEeccccc
Confidence 0000000000 0000000 000000000000000000 0000000111111 12 2334566789999999986
Q ss_pred Ccc-chhhhhhhhcCCCCcccccccccccCcccccceee----------ecchhhHHHHHHHHHHHhhccCCCCcEEEEe
Q 045757 363 NGK-KTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE----------VTVDTQVDALIEAVKERLEFGAETSRTMVFA 431 (548)
Q Consensus 363 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~ 431 (548)
.+. .+....++-. ........ ....+-..+..+. .+.+.....+.+.+.+... ..++++|||+
T Consensus 608 ~~~~~~~~~~lGl~--~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~--~~~g~~LVlf 681 (850)
T TIGR01407 608 SHSFESFPQLLGLT--DVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA--ITSPKILVLF 681 (850)
T ss_pred CCChHHHHHhcCCC--ccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH--hcCCCEEEEe
Confidence 543 2232222210 00000000 0000000000000 1112223344455544432 2457999999
Q ss_pred CChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCC--EEEEecCCCC-
Q 045757 432 NTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVS--HVIQADFATS- 503 (548)
Q Consensus 432 ~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~--~VI~~~~p~s- 503 (548)
+|....+.+++.|... ++.+. ..+.. ..|.++++.|+ ++..||+||+.+++|||+|+.. .||...+|..
T Consensus 682 tS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~ 758 (850)
T TIGR01407 682 TSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFAN 758 (850)
T ss_pred CCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCC
Confidence 9999999999999762 33333 33333 57889999999 6679999999999999999865 5677776631
Q ss_pred -----------------------------HHHHHHHhcccccCCCcceEEEEeecC--chhHHHHHHHHHH
Q 045757 504 -----------------------------AVDFLHRVGRTARAGQYGLVTSLYTES--NRDLVDTIRRAAK 543 (548)
Q Consensus 504 -----------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~~--~~~~~~~i~~~~~ 543 (548)
...+.|.+||.-|..++.-++++++.+ ...+-+.+-+++.
T Consensus 759 p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 759 PKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 234689999999987664455566665 4455566665554
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.5e-22 Score=207.96 Aligned_cols=321 Identities=20% Similarity=0.289 Sum_probs=204.6
Q ss_pred HHHHHHHC-CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEc
Q 045757 95 LIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLC 173 (548)
Q Consensus 95 l~~~l~~~-~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~ 173 (548)
..+.+++. |+ .|+..|+-....+..|+++-+.||||.|||.- .+.+...+.. .+.++++|+
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~----------------kgkr~yii~ 132 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK----------------KGKRVYIIV 132 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh----------------cCCeEEEEe
Confidence 33444444 55 89999999999999999999999999999964 3333333322 368999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc----------cCCCCcEEEeChHHHHhhcChhhhhcccccc--C
Q 045757 174 PNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW----------PIGKPDVIVSTPAALLNNIDPKRRRRMEFVR--G 241 (548)
Q Consensus 174 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~--~ 241 (548)
||..|+.|+++.+.++....+...+.+. +++.-.. ..+++||+|+|.+-|...... +. +
T Consensus 133 PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--------L~~~k 203 (1187)
T COG1110 133 PTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--------LSKLK 203 (1187)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--------hcccC
Confidence 9999999999999999987774334444 5554222 257899999999988665532 33 5
Q ss_pred eeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhh-hcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC
Q 045757 242 VKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR-MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320 (548)
Q Consensus 242 ~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
+++|++|.+|.++..+ ..+.+++..+-++...+-. ... ..+....- .+
T Consensus 204 FdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~----------------------~~lr~~~~-------~~ 252 (1187)
T COG1110 204 FDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYEL----------------------IKLRRKLY-------GE 252 (1187)
T ss_pred CCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHH----------------------HHHHHHhh-------hh
Confidence 8999999999998766 5566666665443321100 000 00000000 00
Q ss_pred CCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccc--hhhhhhhhcCCCCcccccccccccCcccccce
Q 045757 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKK--TAGAVLKQMFPDADWISGNYLHFHNPRLKEKW 398 (548)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (548)
+..+...+.. ...-......-....+.++.|||..+.+.+ +...++.- ..+.......++.+.+
T Consensus 253 ~~~~~~~e~~------~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF--------evG~~~~~LRNIvD~y 318 (1187)
T COG1110 253 KRAERVREEL------REVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF--------EVGSGGEGLRNIVDIY 318 (1187)
T ss_pred hhHHHHHHHH------HHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC--------ccCccchhhhheeeee
Confidence 0000000000 000000001122457899999999866642 12222221 1111111112233333
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCC---hhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANT---VDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
... .....+.+.++. -+..+|||++. ++.++.+++.|++.|+++..+|+. +.+.++.|. |+.
T Consensus 319 ~~~---~~~e~~~elvk~------lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~Gei 384 (1187)
T COG1110 319 VES---ESLEKVVELVKK------LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEV 384 (1187)
T ss_pred ccC---ccHHHHHHHHHH------hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCce
Confidence 332 334444444444 26689999999 999999999999999999999985 367889998 888
Q ss_pred cEEEEe----CcccccCCCCC-CCEEEEecCC
Q 045757 475 GVFVCT----DAAARGIDIPN-VSHVIQADFA 501 (548)
Q Consensus 475 ~vLv~T----~~~~~GiDip~-v~~VI~~~~p 501 (548)
++||.. .++.||+|+|. ++++|+++.|
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999886 67889999996 8999999976
No 107
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.9e-23 Score=203.19 Aligned_cols=313 Identities=19% Similarity=0.204 Sum_probs=208.5
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH-HH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR-MA 186 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~-~~ 186 (548)
+.+-.+.+..+.+++-+||.|+||||||...--.+.+.-.. ..+.+-+.-|.|--|.-+++ +.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------------~~g~I~~TQPRRVAavslA~RVA 116 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------------SSGKIACTQPRRVAAVSLAKRVA 116 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------------cCCcEEeecCchHHHHHHHHHHH
Confidence 34444556666677889999999999998643333333222 23458888899877776654 33
Q ss_pred HHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC-hHHHHHHH
Q 045757 187 NALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS-FQNQVIRL 265 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~-~~~~~~~i 265 (548)
.+.....| -.++...--.+...+...|.+.|-++|++.+..+. .++++++||+||||. .+ ....+.-+
T Consensus 117 eE~~~~lG---~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp-----~LskYsvIIlDEAHE---Rsl~TDiLlGl 185 (674)
T KOG0922|consen 117 EEMGCQLG---EEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDP-----LLSKYSVIILDEAHE---RSLHTDILLGL 185 (674)
T ss_pred HHhCCCcC---ceeeeEEEecccCCCceeEEEecchHHHHHHhcCC-----ccccccEEEEechhh---hhhHHHHHHHH
Confidence 45554444 23333333333345578899999999987764432 388999999999994 22 12222222
Q ss_pred HhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHh
Q 045757 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRK 345 (548)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (548)
++.+-
T Consensus 186 LKki~--------------------------------------------------------------------------- 190 (674)
T KOG0922|consen 186 LKKIL--------------------------------------------------------------------------- 190 (674)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 22221
Q ss_pred hhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCC
Q 045757 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS 425 (548)
Q Consensus 346 ~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 425 (548)
.-..+.+++.||||+. ...++.++.....+....... .+...+..-...+-+++.+..+.+.. ...+++
T Consensus 191 ~~R~~LklIimSATld-------a~kfS~yF~~a~i~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih-~~E~~G 259 (674)
T KOG0922|consen 191 KKRPDLKLIIMSATLD-------AEKFSEYFNNAPILTIPGRTF---PVEILYLKEPTADYVDAALITVIQIH-LTEPPG 259 (674)
T ss_pred hcCCCceEEEEeeeec-------HHHHHHHhcCCceEeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHH-ccCCCC
Confidence 0013468999999996 233344444433332221111 11222222233334444444444433 337788
Q ss_pred cEEEEeCChhHHHHHHHHHHHcC----C----ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEE
Q 045757 426 RTMVFANTVDAVYAVTKILKTAG----I----ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVI 496 (548)
Q Consensus 426 ~~lVF~~s~~~~~~l~~~L~~~~----~----~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI 496 (548)
-+|||.+..++.+.+++.|.+.. - -+..+||.|+.+++.++...-. |..+|+++|++++..+.||++.+||
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVV 339 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVV 339 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEE
Confidence 99999999999999999998751 1 2468999999999998877776 4559999999999999999999999
Q ss_pred EecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecCchhH
Q 045757 497 QADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL 534 (548)
Q Consensus 497 ~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~ 534 (548)
.-++ |.|.++-.||.|||||. .+|+|+-+|++++.+.
T Consensus 340 DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 340 DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYDK 394 (674)
T ss_pred cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHhh
Confidence 7664 56899999999999998 5899999999986643
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=1.4e-23 Score=186.24 Aligned_cols=141 Identities=29% Similarity=0.508 Sum_probs=118.6
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
||+|.++++.+.+|+++++.||||+|||++|+++++..+.+. +...+++++|+++|++|+.+.+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------~~~~~lii~P~~~l~~q~~~~~~ 65 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---------------KDARVLIIVPTRALAEQQFERLR 65 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------SSSEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---------------CCceEEEEeeccccccccccccc
Confidence 689999999999999999999999999999999999888653 23589999999999999999999
Q ss_pred HhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 188 ALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 188 ~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
.+....+ +++..++++.... .++++|+|+||+++.+.+.... . .+.++++||+||+|.+..+.+..
T Consensus 66 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~-~~~~~~~iViDE~h~l~~~~~~~ 138 (169)
T PF00270_consen 66 KFFSNTN---VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---I-NISRLSLIVIDEAHHLSDETFRA 138 (169)
T ss_dssp HHTTTTT---SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---S-TGTTESEEEEETHHHHHHTTHHH
T ss_pred ccccccc---cccccccccccccccccccccccccccccCcchhhccccccc---c-ccccceeeccCcccccccccHHH
Confidence 9987644 7788888877633 2579999999999998887632 1 35569999999999998888888
Q ss_pred HHHHHHhhhh
Q 045757 261 QVIRLINMFR 270 (548)
Q Consensus 261 ~~~~i~~~l~ 270 (548)
.+..++..+.
T Consensus 139 ~~~~i~~~~~ 148 (169)
T PF00270_consen 139 MLKSILRRLK 148 (169)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHHhc
Confidence 8888876653
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.2e-22 Score=217.28 Aligned_cols=330 Identities=21% Similarity=0.217 Sum_probs=207.6
Q ss_pred CcHHHHhhhhcccCC---C-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 107 PSIVQAASVGPVLSG---K-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g---~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.++.|..++..+.+. . .+++.||||+|||.+.+.++.....+. .....+++++.|++.+.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------~~~~~r~i~vlP~~t~ie~~ 262 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------IKLKSRVIYVLPFRTIIEDM 262 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------ccccceEEEEccHHHHHHHH
Confidence 489999999887754 4 788999999999999988887776441 11367999999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEeCCCCcc--------------------CCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 183 VRMANALSADNGEPLVRAVAVCGGQGWP--------------------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
++.++......+. ......|..... ..-..+.++||..................-..
T Consensus 263 ~~r~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (733)
T COG1203 263 YRRAKEIFGLFSV---IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLT 339 (733)
T ss_pred HHHHHhhhccccc---ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHh
Confidence 9999987655431 111022222211 11234455555444332111100000001125
Q ss_pred eEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCC
Q 045757 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322 (548)
Q Consensus 243 ~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (548)
+.+||||+|.+.+......+..++..+.
T Consensus 340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~---------------------------------------------------- 367 (733)
T COG1203 340 SLVILDEVHLYADETMLAALLALLEALA---------------------------------------------------- 367 (733)
T ss_pred hchhhccHHhhcccchHHHHHHHHHHHH----------------------------------------------------
Confidence 7899999998766543334444443332
Q ss_pred ccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeec
Q 045757 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVT 402 (548)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (548)
..+..+++||||+|...+.................... .......+... ....
T Consensus 368 -------------------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~-~~~~e~~~~~~-~~~~ 420 (733)
T COG1203 368 -------------------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC-PKEDEPGLKRK-ERVD 420 (733)
T ss_pred -------------------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc-ccccccccccc-cchh
Confidence 13578999999999655544444333211111110000 00000000000 0000
Q ss_pred chhhH-HHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-----cCCcE
Q 045757 403 VDTQV-DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-----EKGGV 476 (548)
Q Consensus 403 ~~~~~-~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~v 476 (548)
..... ........ .....+++++|.|||+..|..+++.|+..+..+..+|+.+....|.+.++..+ ++..|
T Consensus 421 ~~~~~~~~~~~~~~---~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~I 497 (733)
T COG1203 421 VEDGPQEELIELIS---EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFI 497 (733)
T ss_pred hhhhhhHhhhhcch---hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeE
Confidence 00010 01111111 22356899999999999999999999998888999999999999998877554 45699
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCC--CcceEEEEeecCchhHHHH
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG--QYGLVTSLYTESNRDLVDT 537 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~G~~i~~~~~~~~~~~~~ 537 (548)
+|||.+.+.|+|+ +.+.+|-=-.| +..++||+||++|.| ..|.++.+...........
T Consensus 498 vVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~ 557 (733)
T COG1203 498 VVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKY 557 (733)
T ss_pred EEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhh
Confidence 9999999999999 68888766555 889999999999999 5677777766654444333
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=4e-22 Score=201.88 Aligned_cols=339 Identities=19% Similarity=0.213 Sum_probs=200.3
Q ss_pred CCCcHHHHhhhhccc----CC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 105 GRPSIVQAASVGPVL----SG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~----~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
..++.+|..||..+. +| +.++++|.||+|||.++ +.++.+++.. ....++|+|+-+++|+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~--------------~~~KRVLFLaDR~~Lv 228 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS--------------GWVKRVLFLADRNALV 228 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc--------------chhheeeEEechHHHH
Confidence 368999999996554 44 56999999999999995 5667777654 2356899999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChh-hhhccccccCeeEEEEecchhhccCCh
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPK-RRRRMEFVRGVKYVVFDEADMLLCGSF 258 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~~~~~vV~DEah~l~~~~~ 258 (548)
.|.+..+..+..... ......+... ...+.|.++|++.+......+ ..........+++||+||||+-...
T Consensus 229 ~QA~~af~~~~P~~~-----~~n~i~~~~~-~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-- 300 (875)
T COG4096 229 DQAYGAFEDFLPFGT-----KMNKIEDKKG-DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-- 300 (875)
T ss_pred HHHHHHHHHhCCCcc-----ceeeeecccC-CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh--
Confidence 999999888876542 2222222211 126899999999998887665 3333344556999999999974333
Q ss_pred HHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCC----CCCchhhhhhhhhhcccCCCCCCCCCccccccccccCc
Q 045757 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLT----QPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334 (548)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (548)
....++..+-.....+.+. +.......+-.++ ...+...+.....
T Consensus 301 --~~~~I~dYFdA~~~gLTAT----P~~~~d~~T~~~F~g~Pt~~YsleeAV~DG------------------------- 349 (875)
T COG4096 301 --EWSSILDYFDAATQGLTAT----PKETIDRSTYGFFNGEPTYAYSLEEAVEDG------------------------- 349 (875)
T ss_pred --hhHHHHHHHHHHHHhhccC----cccccccccccccCCCcceeecHHHHhhcc-------------------------
Confidence 3334444443222222111 1111111110000 0000001111111
Q ss_pred ccchhhHHHHhhhcccceeEEEeeccCCCccchhhhh--hhhcCCCCcccccccccccCcccccceeeecchhhHHHHHH
Q 045757 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAV--LKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIE 412 (548)
Q Consensus 335 ~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 412 (548)
+.-....+.+-.-.+..+.+..... .+.......+ ...+................+.+..
T Consensus 350 ------------fLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~------dd~~~~~~d~dr~~v~~~~~~~V~r 411 (875)
T COG4096 350 ------------FLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE------DDQNFEARDFDRTLVIPFRTETVAR 411 (875)
T ss_pred ------------ccCCCCceEEeeeccccCcCcCccchhhhhhccccCc------ccccccccccchhccccchHHHHHH
Confidence 1111222222222222221111110 0000000000 0000011111111222344566666
Q ss_pred HHHHHhhc---cCCCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhc--cCC-cEEEEeC
Q 045757 413 AVKERLEF---GAETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQ--EKG-GVFVCTD 481 (548)
Q Consensus 413 ~l~~~~~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~--~~~-~vLv~T~ 481 (548)
.+.+.+.. +...++|||||.+..+|+.+.+.|.+. +--+..+.++. ++-...++.|. ++. +|.|+.+
T Consensus 412 ~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehh
Confidence 66666644 234689999999999999999999876 23466666664 34445567775 333 8999999
Q ss_pred cccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC
Q 045757 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 517 (548)
++..|||+|.|..++++....|...|.||+||.-|.
T Consensus 490 lL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 490 LLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999999999999999999984
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=9.4e-23 Score=202.94 Aligned_cols=396 Identities=18% Similarity=0.160 Sum_probs=226.4
Q ss_pred CCcHHHHhhhhccc----CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.++++|.+.++.+. .|-|+|+...+|.|||+.. +.++-.+.... .-.+.-||+||...|-+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-------------~~~GPfLVi~P~StL~N- 231 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-------------GIPGPFLVIAPKSTLDN- 231 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------------CCCCCeEEEeeHhhHHH-
Confidence 68999999998876 5678999999999999884 44444444321 13578999999877755
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc---------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP---------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
|.+++++++.. ++++.++|+.... .+..+|+|+|+++.+.--.- ..--..+++|+||||+
T Consensus 232 W~~Ef~rf~P~-----l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~------lk~~~W~ylvIDEaHR 300 (971)
T KOG0385|consen 232 WMNEFKRFTPS-----LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF------LKKFNWRYLVIDEAHR 300 (971)
T ss_pred HHHHHHHhCCC-----cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH------HhcCCceEEEechhhh
Confidence 56778888754 8899999986532 45899999999998544211 0012468999999999
Q ss_pred hccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcccccccccc
Q 045757 253 LLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332 (548)
Q Consensus 253 l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (548)
+-+. ...+.++++.+....+.+-...........-+.....-.++.....+....++.........+....+.. ...
T Consensus 301 iKN~--~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~-vL~ 377 (971)
T KOG0385|consen 301 IKNE--KSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK-VLR 377 (971)
T ss_pred hcch--hhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh-hhh
Confidence 8543 3445555555543322221110000000000000111112222211111111111100000000000000 000
Q ss_pred CcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcc-------------------cccccccc---c
Q 045757 333 GSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADW-------------------ISGNYLHF---H 390 (548)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~~---~ 390 (548)
...-.+-...+...+++..-++++ ..+....++.....+..-.+.... +...|+.. +
T Consensus 378 pFlLRR~K~dVe~sLppKkE~~iy-vgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 378 PFLLRRIKSDVEKSLPPKKELIIY-VGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred HHHHHHHHHhHhhcCCCcceeeEe-ccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 000001111122222232222221 112111122222222111100000 00011000 0
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhh
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
.+......+.+....|+.-|-+.|.... ..++++|||.+-.....-+.+++.-.++....++|.++.++|...++.|
T Consensus 457 g~pyttdehLv~nSGKm~vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 457 GPPYTTDEHLVTNSGKMLVLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred CCCCCcchHHHhcCcceehHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhc
Confidence 0111111122333334444444444332 5789999999999999999999999999999999999999999999999
Q ss_pred c-c---CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcc--eEEEEeecCchhH
Q 045757 471 Q-E---KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG--LVTSLYTESNRDL 534 (548)
Q Consensus 471 ~-~---~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G--~~i~~~~~~~~~~ 534 (548)
. . +.-+|++|.+.+.|||+..+|+||.||..+++..=+|...||+|.|+.. .|+.|++++..+.
T Consensus 534 n~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 534 NAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred CCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 8 2 2367899999999999999999999999999999999999999999874 4677888875543
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.90 E-value=1e-21 Score=188.76 Aligned_cols=169 Identities=25% Similarity=0.308 Sum_probs=132.0
Q ss_pred ccceeEEEeeccCCCccchhh-hhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcE
Q 045757 349 RSKQYIFVAATLPINGKKTAG-AVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRT 427 (548)
Q Consensus 349 ~~~q~v~~SAT~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 427 (548)
...|++++|||+......... .... ....+..-+...+..-+...+++.++..+.+.. ..+.++
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~~~vve------------QiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~---~~~eRv 449 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSGGNVVE------------QIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRV---AKNERV 449 (663)
T ss_pred hcCCEEEEECCCChHHHHhccCceeE------------EeecCCCCCCCceeeecCCCcHHHHHHHHHHHH---hcCCeE
Confidence 458999999998633222111 0000 011111112222333455678899988888865 456899
Q ss_pred EEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCC-----
Q 045757 428 MVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFA----- 501 (548)
Q Consensus 428 lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p----- 501 (548)
||-+-|++.++.+.++|.+.|+++.++|++...-||.+++.+.| |..+|||.-+.+-+|+|+|.|..|..+|..
T Consensus 450 LVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFL 529 (663)
T COG0556 450 LVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFL 529 (663)
T ss_pred EEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccc
Confidence 99999999999999999999999999999999999999999999 788999999999999999999999999864
Q ss_pred CCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 502 TSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 502 ~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
.|-.+++|-+|||+|. -.|.+|.+.+.-...
T Consensus 530 Rse~SLIQtIGRAARN-~~GkvIlYAD~iT~s 560 (663)
T COG0556 530 RSERSLIQTIGRAARN-VNGKVILYADKITDS 560 (663)
T ss_pred cccchHHHHHHHHhhc-cCCeEEEEchhhhHH
Confidence 6899999999999995 579999777664433
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.5e-22 Score=211.18 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=113.8
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccC-CcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK-GGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~v 476 (548)
.+......|...+.+.+.... ..+.++||||+|+..++.+++.|...++.+..+|+ .+.+|+..+..|.++ ..|
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~---~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~V 649 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQ---KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAV 649 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHh---hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeE
Confidence 445566678888888876642 46889999999999999999999999999999997 488999999999955 599
Q ss_pred EEEeCcccccCCCC---CCC-----EEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 477 FVCTDAAARGIDIP---NVS-----HVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 477 Lv~T~~~~~GiDip---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
+|||++++||+||+ +|. +||+...|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 650 tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 650 TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999999999 453 348999999999999999999999999999999998764
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=4.3e-21 Score=202.42 Aligned_cols=140 Identities=26% Similarity=0.340 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
..++..+++.+.... ..+.++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|+ ++..|+|||+.
T Consensus 429 ~~q~~~L~~~L~~~~---~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRV---AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHH---hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 445677777776654 45789999999999999999999999999999999999999999999999 67799999999
Q ss_pred ccccCCCCCCCEEEEecC-----CCCHHHHHHHhcccccCCCcceEEEEeec---------CchhHHHHHHHHHHcCCC
Q 045757 483 AARGIDIPNVSHVIQADF-----ATSAVDFLHRVGRTARAGQYGLVTSLYTE---------SNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~---------~~~~~~~~i~~~~~~~~p 547 (548)
+++|+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+....++|+..++...+
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 583 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHG 583 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999885 78999999999999996 78999999995 456666777777666554
No 115
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=1.1e-20 Score=203.52 Aligned_cols=407 Identities=15% Similarity=0.170 Sum_probs=219.3
Q ss_pred CCCCCcHHHHhhhhcc----cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 103 GFGRPSIVQAASVGPV----LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i----~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
|| ++++-|.+....+ .+++.++++|+||+|||++|++|++... .+.++||++||++|
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------~~~~vvI~t~T~~L 303 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------DQRQIIVSVPTKIL 303 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------CCCcEEEEeCcHHH
Confidence 55 6899999966443 4578899999999999999999988643 24689999999999
Q ss_pred HHHHH-HHHHHhhcccCCCcEEEEEEeCCCCcc-----------------------------------------------
Q 045757 179 CEQVV-RMANALSADNGEPLVRAVAVCGGQGWP----------------------------------------------- 210 (548)
Q Consensus 179 ~~q~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~----------------------------------------------- 210 (548)
++|+. +.+..+.+..+ +++..+.|+.++-
T Consensus 304 q~Ql~~~~i~~l~~~~~---~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~ 380 (820)
T PRK07246 304 QDQIMAEEVKAIQEVFH---IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYA 380 (820)
T ss_pred HHHHHHHHHHHHHHhcC---CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCcccc
Confidence 99994 66777766655 5566666654321
Q ss_pred ------------------------------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC--h
Q 045757 211 ------------------------------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS--F 258 (548)
Q Consensus 211 ------------------------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~--~ 258 (548)
...+||+|+....|...+.... .+...+++||||||++.+.. +
T Consensus 381 ~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-----~~p~~~~lIiDEAH~l~~~~~~~ 455 (820)
T PRK07246 381 AYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-----DFARNKVLVFDEAQKLMLQLEQL 455 (820)
T ss_pred HHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-----CCCCCCEEEEECcchhHHHHHHH
Confidence 0148999999998877653221 25678999999999985321 0
Q ss_pred HHH---HHHHHhhhhccHH---------HHhhhcccCcccccccCCCCCCC---CCchhh----hhhh-------hhhcc
Q 045757 259 QNQ---VIRLINMFRFDEK---------QLSRMNESGVEKPLEMDNSSLTQ---PDLQDE----ENLQ-------DEYIS 312 (548)
Q Consensus 259 ~~~---~~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~-------~~~~~ 312 (548)
... ...+...+..... .+.............+....... ..+... ..+. ...+.
T Consensus 456 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~ 535 (820)
T PRK07246 456 SRHQLNITSFLQTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFA 535 (820)
T ss_pred hcceecHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 1111111100000 00000000000000000000000 000000 0000 00010
Q ss_pred cCCCCCCCCCcccccc---ccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccc--
Q 045757 313 DEGNFEGDSDVEGLTE---ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYL-- 387 (548)
Q Consensus 313 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 387 (548)
.... ..+.+.... ....-.....+...+...+.....+|++|||++..........++-...........+.
T Consensus 536 ~~~~---~~W~e~~~~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~ 612 (820)
T PRK07246 536 TAEG---DYWLESEKQSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQD 612 (820)
T ss_pred CCCC---eEEEEecCCCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHc
Confidence 0000 011111000 00000111112223355556678899999999865544333333210000000000000
Q ss_pred --cccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHH
Q 045757 388 --HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAK 465 (548)
Q Consensus 388 --~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 465 (548)
......+.. ....+.+.....+.+.+.... ..+++++|+++|....+.+++.|......+ ...|... .+.+
T Consensus 613 ~~~~i~~~~p~-~~~~~~~~~~~~~~~~i~~~~---~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~ 685 (820)
T PRK07246 613 QLVVVDQDMPL-VTETSDEVYAEEIAKRLEELK---QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYN 685 (820)
T ss_pred cEEEeCCCCCC-CCCCChHHHHHHHHHHHHHHH---hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHH
Confidence 000000000 000112233445555554433 346899999999999999999998765555 3334222 3566
Q ss_pred HHHhhc-cCCcEEEEeCcccccCCCCC--CCEEEEecCCCC------------------------------HHHHHHHhc
Q 045757 466 TLVNFQ-EKGGVFVCTDAAARGIDIPN--VSHVIQADFATS------------------------------AVDFLHRVG 512 (548)
Q Consensus 466 ~~~~f~-~~~~vLv~T~~~~~GiDip~--v~~VI~~~~p~s------------------------------~~~~~Qr~G 512 (548)
++++|+ ++..||++|..+++|||+|+ ...||...+|.. ...+.|.+|
T Consensus 686 l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~G 765 (820)
T PRK07246 686 IKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIG 765 (820)
T ss_pred HHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhc
Confidence 899998 55699999999999999973 556677776621 234789999
Q ss_pred ccccCCCc-ceEEEEeecC--chhHHHHHHHHHHcCCC
Q 045757 513 RTARAGQY-GLVTSLYTES--NRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 513 R~gR~g~~-G~~i~~~~~~--~~~~~~~i~~~~~~~~p 547 (548)
|.-|...+ | ++++++.+ ...+-+.+.+++-.+.|
T Consensus 766 RLIRs~~D~G-vv~ilD~R~~~k~Yg~~~l~sLP~~~~ 802 (820)
T PRK07246 766 RTMRREDQKS-AVLILDRRILTKSYGKQILASLAEEFL 802 (820)
T ss_pred ccccCCCCcE-EEEEECCcccccHHHHHHHHhCCCCCc
Confidence 99998654 5 45566655 45566777766655444
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=5.4e-21 Score=202.50 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=82.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcC-----CceEEecCCCCHH---------------------HHHHHHHhhc--cCCc
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAG-----IECYCYHKDLSLE---------------------ERAKTLVNFQ--EKGG 475 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~---------------------~r~~~~~~f~--~~~~ 475 (548)
+++++|||.++.+|..+++.|.+.. .....+++..+.+ ....++++|+ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 5899999999999999999987652 3344555543322 2246888997 3459
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC-CCcceEEEEeecCchhHHHHHHHHHH
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA-GQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~-g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
|||.++++..|+|.|.+++++...+-.+ ..++|++||+.|. +.......+++..+. .+.+.+++.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g~--~~~l~~Al~ 659 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRGL--EKSLIDALS 659 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcCh--HHHHHHHHH
Confidence 9999999999999999999988886665 5689999999993 322112223333322 356666654
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.9e-21 Score=192.68 Aligned_cols=391 Identities=19% Similarity=0.166 Sum_probs=240.2
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|++.|.-..-.+++| -+..+.||.|||+++.+|++...+. +..+-|++|+..|+.
T Consensus 74 ~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-----------------G~~VhvvT~NdyLA~ 133 (764)
T PRK12326 74 TLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-----------------GRRVHVITVNDYLAR 133 (764)
T ss_pred HcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc-----------------CCCeEEEcCCHHHHH
Confidence 3466 7999999988888876 4889999999999999999877654 578999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhhh--ccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRRR--RMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~~--~~~~~~~~~~vV~DEah~l 253 (548)
|-++++..+....| +.+..+.++.+.. ...+||+++|..-+ .+.|..+-.. .....+.+.+.|+||+|.+
T Consensus 134 RDae~m~~ly~~LG---Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 134 RDAEWMGPLYEALG---LTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HHHHHHHHHHHhcC---CEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 99999999999988 8999888876543 35799999998765 3333222110 0112456889999999977
Q ss_pred c-cC--------------ChHHHHHHHHhhhhccHHHHhhhcccCccccccc------------CCCCCCCCCc-hh---
Q 045757 254 L-CG--------------SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEM------------DNSSLTQPDL-QD--- 302 (548)
Q Consensus 254 ~-~~--------------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~--- 302 (548)
+ +. .....+..+...+..... ...........+ ....+....- ..
T Consensus 211 LIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~d----y~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~ 286 (764)
T PRK12326 211 LVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKD----YEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLT 286 (764)
T ss_pred eeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCc----EEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHH
Confidence 4 11 122233333333322100 000000000000 0000000000 00
Q ss_pred -hh-hhh--------hhhcccCCCCC-----------CCCC----------ccccccccccCcccchhhHHHHhhhcccc
Q 045757 303 -EE-NLQ--------DEYISDEGNFE-----------GDSD----------VEGLTEETKSGSIKKKDWRRVRKNYQRSK 351 (548)
Q Consensus 303 -~~-~~~--------~~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (548)
.. .+. ..|+...++.. +..+ +++++-..+.....+-.++.+...| .
T Consensus 287 ~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y---~ 363 (764)
T PRK12326 287 QVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRY---P 363 (764)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhc---c
Confidence 00 000 01111111100 0001 1111112222222223344444444 4
Q ss_pred eeEEEeeccCCCccchhhhhhhhcCCC-CcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEE
Q 045757 352 QYIFVAATLPINGKKTAGAVLKQMFPD-ADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVF 430 (548)
Q Consensus 352 q~v~~SAT~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF 430 (548)
.+.+|+.|...... .+...+.. ...++.. ...... .....+......|..++++.+.+.. ..+.++||.
T Consensus 364 kLsGMTGTa~t~~~-----Ef~~iY~l~Vv~IPtn-kp~~R~-d~~d~iy~t~~~k~~Aii~ei~~~~---~~GrPVLVg 433 (764)
T PRK12326 364 TVCGMTGTAVAAGE-----QLRQFYDLGVSVIPPN-KPNIRE-DEADRVYATAAEKNDAIVEHIAEVH---ETGQPVLVG 433 (764)
T ss_pred hheeecCCChhHHH-----HHHHHhCCcEEECCCC-CCceee-cCCCceEeCHHHHHHHHHHHHHHHH---HcCCCEEEE
Confidence 68899999753222 22222222 1122111 111111 1122455566778888888776653 578999999
Q ss_pred eCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCC---------------CCEE
Q 045757 431 ANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPN---------------VSHV 495 (548)
Q Consensus 431 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~---------------v~~V 495 (548)
|.|+..++.+++.|.+.+++...+++.-...| .+++..--....|.|||++++||.||.- ==||
T Consensus 434 t~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhV 512 (764)
T PRK12326 434 THDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHV 512 (764)
T ss_pred eCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEE
Confidence 99999999999999999999999988744333 3444443345599999999999999962 2378
Q ss_pred EEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 496 IQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 496 I~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
|-...+.|..--.|-.||+||.|.+|.+..|++-+|.
T Consensus 513 IgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 513 IGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9899999999999999999999999999988887654
No 118
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=9.7e-21 Score=197.86 Aligned_cols=319 Identities=17% Similarity=0.185 Sum_probs=218.9
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
..+..+.+.+.++.+.+.++|.|.||+|||...-..+++...+. ....++++--|.|--|.-+++.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~--------------~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES--------------GAACNIICTQPRRISAISVAER 238 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc--------------CCCCeEEecCCchHHHHHHHHH
Confidence 45778888899999999999999999999998777788887665 1355688888998777777665
Q ss_pred HHH-hhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh-hccCChHHHHH
Q 045757 186 ANA-LSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM-LLCGSFQNQVI 263 (548)
Q Consensus 186 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~-l~~~~~~~~~~ 263 (548)
+.. .+...| -.+..-.+..........+++||.+.|++.+... ..+.++..||+||+|. =.+..|--.+.
T Consensus 239 Va~ER~~~~g---~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~-----~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 239 VAKERGESLG---EEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSD-----PTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHhccccC---CeeeEEEeeecccCCceeEEEecHHHHHHHhccC-----cccccCceeeeeeEEEccCCcccHHHHH
Confidence 543 232233 3333333334444445889999999999998763 2478899999999994 22333322222
Q ss_pred HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHH
Q 045757 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRV 343 (548)
Q Consensus 264 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (548)
+.+-..
T Consensus 311 k~lL~~-------------------------------------------------------------------------- 316 (924)
T KOG0920|consen 311 KDLLPR-------------------------------------------------------------------------- 316 (924)
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 221111
Q ss_pred HhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC----------------cccccc-----e----
Q 045757 344 RKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN----------------PRLKEK-----W---- 398 (548)
Q Consensus 344 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~-----~---- 398 (548)
.+..++|+||||+.. ..+++|+.....+......... ....+. -
T Consensus 317 ----~p~LkvILMSAT~da-------e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~ 385 (924)
T KOG0920|consen 317 ----NPDLKVILMSATLDA-------ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRL 385 (924)
T ss_pred ----CCCceEEEeeeecch-------HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccc
Confidence 157899999999862 2222333222222211110000 000000 0
Q ss_pred --eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------CCceEEecCCCCHHHHHHHHHh
Q 045757 399 --IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-------GIECYCYHKDLSLEERAKTLVN 469 (548)
Q Consensus 399 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~ 469 (548)
+.+-..+-...++..+..++......+.+|||.+....+..+.+.|... .+-+..+|+.|+..+++.+.+.
T Consensus 386 ~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~ 465 (924)
T KOG0920|consen 386 ARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKR 465 (924)
T ss_pred ccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCC
Confidence 0000111223445555555555577899999999999999999999753 3567889999999999999888
Q ss_pred hccC-CcEEEEeCcccccCCCCCCCEEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecC
Q 045757 470 FQEK-GGVFVCTDAAARGIDIPNVSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 470 f~~~-~~vLv~T~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
...+ .+|+++|.+++.+|.|++|-+||..+. +-|.+.-.||.|||||. ++|.|+.+|+..
T Consensus 466 pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 466 PPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred CCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 8755 599999999999999999999997654 24677889999999998 899999999986
Q ss_pred ch
Q 045757 531 NR 532 (548)
Q Consensus 531 ~~ 532 (548)
..
T Consensus 545 ~~ 546 (924)
T KOG0920|consen 545 RY 546 (924)
T ss_pred hh
Confidence 43
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=198.19 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=109.7
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.|-.||.+.+..+-.++..+|+|||.+|||++- ...+++.++. .....+|+++|+++|+.|+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe--------------sD~~VVIyvaPtKaLVnQvsa~ 575 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE--------------SDSDVVIYVAPTKALVNQVSAN 575 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh--------------cCCCEEEEecchHHHhhhhhHH
Confidence 588999999999999999999999999999874 3455666554 2467899999999999999887
Q ss_pred HHHhhcccCCCcEEEEEEeCCCC--ccCC--CCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQG--WPIG--KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~--~~~~--~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
+.+...... ..+...++|.-. +... .|+|+|+-|+.+..++..... ...+..++++||+||+|.+.+..-+-.
T Consensus 576 VyaRF~~~t--~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~-~q~~cerIRyiIfDEVH~iG~~ed~l~ 652 (1330)
T KOG0949|consen 576 VYARFDTKT--FLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH-HQKFCERIRYIIFDEVHLIGNEEDGLL 652 (1330)
T ss_pred HHHhhccCc--cccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh-hhhhhhcceEEEechhhhccccccchH
Confidence 776653221 134445555432 3333 799999999999888766422 234578899999999998876655555
Q ss_pred HHHHHhhhh
Q 045757 262 VIRLINMFR 270 (548)
Q Consensus 262 ~~~i~~~l~ 270 (548)
+++++...+
T Consensus 653 ~Eqll~li~ 661 (1330)
T KOG0949|consen 653 WEQLLLLIP 661 (1330)
T ss_pred HHHHHHhcC
Confidence 666665544
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.7e-21 Score=185.09 Aligned_cols=339 Identities=18% Similarity=0.187 Sum_probs=217.0
Q ss_pred CCcHHHHhhhhcccCC---CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG---KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g---~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.++|+|.+++..+..+ ++.||+.|+|+|||++-+-++ ..+ +..+||||.+---+.||
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti-------------------kK~clvLcts~VSVeQW 361 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI-------------------KKSCLVLCTSAVSVEQW 361 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee-------------------cccEEEEecCccCHHHH
Confidence 4799999999888743 689999999999999854333 223 46799999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEeCCCCc-cCCCCcEEEeChHHHHhhcCh--hhhhccccc--cCeeEEEEecchhhccCC
Q 045757 183 VRMANALSADNGEPLVRAVAVCGGQGW-PIGKPDVIVSTPAALLNNIDP--KRRRRMEFV--RGVKYVVFDEADMLLCGS 257 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~--~~~~~vV~DEah~l~~~~ 257 (548)
...+..|....+ -.++.++++.+. ...++.|+|+|+.++..--+. +....+.++ +...++|+||+|.+...-
T Consensus 362 kqQfk~wsti~d---~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M 438 (776)
T KOG1123|consen 362 KQQFKQWSTIQD---DQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM 438 (776)
T ss_pred HHHHHhhcccCc---cceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH
Confidence 998888875544 466777777655 567899999999988543221 112222333 358899999999887766
Q ss_pred hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccc
Q 045757 258 FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKK 337 (548)
Q Consensus 258 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (548)
|...+..+-.+++..-.+ .+. .. ++...++ ....-.....
T Consensus 439 FRRVlsiv~aHcKLGLTA-------------TLv--------------------RE------DdKI~DL-NFLIGPKlYE 478 (776)
T KOG1123|consen 439 FRRVLSIVQAHCKLGLTA-------------TLV--------------------RE------DDKITDL-NFLIGPKLYE 478 (776)
T ss_pred HHHHHHHHHHHhhcccee-------------EEe--------------------ec------ccccccc-ceeecchhhh
Confidence 777776666555411000 000 00 0000000 0000011112
Q ss_pred hhhHHHHhh-hcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHH
Q 045757 338 KDWRRVRKN-YQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKE 416 (548)
Q Consensus 338 ~~~~~~~~~-~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 416 (548)
..|.++.+. +....| ..--+.+-...+...++.. ..-+.....+-...|+..+.-++..
T Consensus 479 AnWmdL~~kGhIA~Vq---CaEVWCpMt~eFy~eYL~~-----------------~t~kr~lLyvMNP~KFraCqfLI~~ 538 (776)
T KOG1123|consen 479 ANWMDLQKKGHIAKVQ---CAEVWCPMTPEFYREYLRE-----------------NTRKRMLLYVMNPNKFRACQFLIKF 538 (776)
T ss_pred ccHHHHHhCCceeEEe---eeeeecCCCHHHHHHHHhh-----------------hhhhhheeeecCcchhHHHHHHHHH
Confidence 233333221 111111 1111211112222222221 1112223445556677777666665
Q ss_pred HhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc--cCCcEEEEeCcccccCCCCCCCE
Q 045757 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGGVFVCTDAAARGIDIPNVSH 494 (548)
Q Consensus 417 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~vLv~T~~~~~GiDip~v~~ 494 (548)
+. ..+.++|||..+.-.....+-.|.+ -+++|..++.||++|++.|+ .+.+.++-..+....+|+|.+++
T Consensus 539 HE---~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnv 610 (776)
T KOG1123|consen 539 HE---RRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANV 610 (776)
T ss_pred HH---hcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccE
Confidence 53 3678999999999888877766643 47899999999999999999 45588888899999999999999
Q ss_pred EEEecCC-CCHHHHHHHhcccccCCC------cceEEEEeecCchhHH
Q 045757 495 VIQADFA-TSAVDFLHRVGRTARAGQ------YGLVTSLYTESNRDLV 535 (548)
Q Consensus 495 VI~~~~p-~s~~~~~Qr~GR~gR~g~------~G~~i~~~~~~~~~~~ 535 (548)
+|+.+.- .|-.+-.||.||.-|+.+ ....+++++.+..+..
T Consensus 611 LIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 611 LIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 9998764 678899999999999743 2446777777655443
No 121
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.9e-21 Score=189.09 Aligned_cols=314 Identities=19% Similarity=0.194 Sum_probs=197.6
Q ss_pred hhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH-HHHhhc
Q 045757 113 ASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM-ANALSA 191 (548)
Q Consensus 113 ~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~-~~~~~~ 191 (548)
+.+.+|..+.-+||||.||||||...-..+.+.-.. ......++.+=|--|.|--+.-+.+. ...+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~-----------s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~ 331 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFA-----------SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV 331 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccC-----------CccCCCCCeeeecCchHHHHHHHHHHHHHHhcc
Confidence 344566667789999999999998643333333211 12222355677788888766666543 334433
Q ss_pred ccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhc
Q 045757 192 DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRF 271 (548)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~ 271 (548)
.+ -.+....--.+.......|.+.|.+.|+.-+.+. +.+..++.||+||||.- .-+...+.-++.++-
T Consensus 332 -~~---~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~D-----flL~kYSvIIlDEAHER--SvnTDILiGmLSRiV- 399 (1172)
T KOG0926|consen 332 -LG---SEVSYQIRFDGTIGEDTSIKFMTDGVLLREIEND-----FLLTKYSVIILDEAHER--SVNTDILIGMLSRIV- 399 (1172)
T ss_pred -Cc---cceeEEEEeccccCCCceeEEecchHHHHHHHHh-----HhhhhceeEEechhhhc--cchHHHHHHHHHHHH-
Confidence 22 2333333333334556789999999998877544 34788999999999941 113333444443331
Q ss_pred cHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhc---
Q 045757 272 DEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQ--- 348 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 348 (548)
++|..+.
T Consensus 400 ----------------------------------------------------------------------~LR~k~~ke~ 409 (1172)
T KOG0926|consen 400 ----------------------------------------------------------------------PLRQKYYKEQ 409 (1172)
T ss_pred ----------------------------------------------------------------------HHHHHHhhhh
Confidence 1222222
Q ss_pred ---ccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccccee--eecchhhHHHHHHHHHHHh--hcc
Q 045757 349 ---RSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI--EVTVDTQVDALIEAVKERL--EFG 421 (548)
Q Consensus 349 ---~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~--~~~ 421 (548)
.....|+||||++..+-.--..++....+ .+.. ..+++-+ ..+.....+.+.++.++.. +..
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP---likV--------dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~k 478 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPP---LIKV--------DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKK 478 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCc---eeee--------ecccCceEEEeccCCCchHHHHHHHHHHHHhhc
Confidence 25789999999985433211222211111 1111 1112211 1222233456666655553 334
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc------------------------------------------------------
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA------------------------------------------------------ 447 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------------------------------------ 447 (548)
-+.+.+|||+.....++.+++.|++.
T Consensus 479 LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~ 558 (1172)
T KOG0926|consen 479 LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVD 558 (1172)
T ss_pred CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhc
Confidence 67889999999999999999999763
Q ss_pred ---------------------------------------------CCceEEecCCCCHHHHHHHHHhhccCC-cEEEEeC
Q 045757 448 ---------------------------------------------GIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTD 481 (548)
Q Consensus 448 ---------------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~-~vLv~T~ 481 (548)
..-|..+++=++.+++++++..-..+. -++|+|+
T Consensus 559 ~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 559 SGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN 638 (1172)
T ss_pred ccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEecc
Confidence 012556666677777777766665444 5889999
Q ss_pred cccccCCCCCCCEEEEecCC------------------CCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 482 AAARGIDIPNVSHVIQADFA------------------TSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~p------------------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
+++..+.||++.+||..+.- .|.++--||+|||||.| +|.||-+|+..-
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHH
Confidence 99999999999999987642 46667789999999995 799999999863
No 122
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.7e-20 Score=181.71 Aligned_cols=315 Identities=20% Similarity=0.166 Sum_probs=208.6
Q ss_pred CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
+.-..+++-.+.+.++.+++.+||.|.||||||...-..+.+.-+. ..+.++=+--|.+--+.-+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------------k~gk~IgcTQPRRVAAmSV 326 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------------KGGKKIGCTQPRRVAAMSV 326 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc---------------cCCceEeecCcchHHHHHH
Confidence 3344577788888999999999999999999998632222222111 1234477778988777776
Q ss_pred H-HHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 183 V-RMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 183 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
. +..+.+.-..| -.++.-.--.+....+.-|-+.|.++|+.-+.... .+.++++||+||||.= .-....
T Consensus 327 AaRVA~EMgvkLG---~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-----dLasYSViiiDEAHER--TL~TDI 396 (902)
T KOG0923|consen 327 AARVAEEMGVKLG---HEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-----DLASYSVIIVDEAHER--TLHTDI 396 (902)
T ss_pred HHHHHHHhCcccc---cccceEEEeccccCcceeeeeecchhHHHHHhccc-----cccceeEEEeehhhhh--hhhhhH
Confidence 5 44555554444 12222222222234566788999999987664432 3788999999999941 112223
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
+.-+++.+.
T Consensus 397 LfgLvKDIa----------------------------------------------------------------------- 405 (902)
T KOG0923|consen 397 LFGLVKDIA----------------------------------------------------------------------- 405 (902)
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 333333221
Q ss_pred HHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhcc
Q 045757 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFG 421 (548)
Q Consensus 342 ~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 421 (548)
.+.+....+++|||+. ..-++.++.+...+...... -.+.-++........+++.+..+.++. ..
T Consensus 406 ----r~RpdLKllIsSAT~D-------AekFS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH-~t 470 (902)
T KOG0923|consen 406 ----RFRPDLKLLISSATMD-------AEKFSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIH-LT 470 (902)
T ss_pred ----hhCCcceEEeeccccC-------HHHHHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeE-ec
Confidence 1235688999999985 12233344333332211111 112223333444455666666555443 23
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----C-----CceEEecCCCCHHHHHHHHHhhccCC-cEEEEeCcccccCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----G-----IECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~~~-~vLv~T~~~~~GiDip~ 491 (548)
.+.+-+|||....+..+...+.|... | +-+..+|+.++.+.+..+++--..+. +|++||++++..+.|++
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecC
Confidence 45689999999999988888777653 2 34788999999999998876666554 99999999999999999
Q ss_pred CCEEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEeec
Q 045757 492 VSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 492 v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
+.+||.-++ |.|.++-.||+|||||.| +|+|+-+|+.
T Consensus 551 I~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 551 IKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred eEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 999997654 568889999999999995 8999999994
No 123
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.2e-19 Score=178.53 Aligned_cols=309 Identities=19% Similarity=0.205 Sum_probs=196.5
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.....+.+.+..+.+++-++|.++||||||....-.+++.-+. ..+.+-+--|.+.-+.-+++.
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~----------------~~GmIGcTQPRRvAAiSVAkr 419 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA----------------DNGMIGCTQPRRVAAISVAKR 419 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc----------------cCCeeeecCchHHHHHHHHHH
Confidence 3455566666667778889999999999998644333333222 245666777888887777654
Q ss_pred HH-HhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh-hccCChHHHHH
Q 045757 186 AN-ALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM-LLCGSFQNQVI 263 (548)
Q Consensus 186 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~-l~~~~~~~~~~ 263 (548)
+. .+....| -.++...--.+.......|-+.|-+.|+.-.... ..+.++++||+||||. -++. ..+.
T Consensus 420 Va~EM~~~lG---~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d-----~~L~kYSviImDEAHERslNt---Dilf 488 (1042)
T KOG0924|consen 420 VAEEMGVTLG---DTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKD-----RDLDKYSVIIMDEAHERSLNT---DILF 488 (1042)
T ss_pred HHHHhCCccc---cccceEEEeeecCCCceeEEEeccchHHHHHhhh-----hhhhheeEEEechhhhcccch---HHHH
Confidence 43 4433333 1222211112222345678899999987654322 2377899999999994 2221 1122
Q ss_pred HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHH
Q 045757 264 RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRV 343 (548)
Q Consensus 264 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (548)
-+++..-
T Consensus 489 Gllk~~l------------------------------------------------------------------------- 495 (1042)
T KOG0924|consen 489 GLLKKVL------------------------------------------------------------------------- 495 (1042)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 2222110
Q ss_pred HhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHh--hcc
Q 045757 344 RKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERL--EFG 421 (548)
Q Consensus 344 ~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~ 421 (548)
.-.++.++|.+|||+. .+ .+.+++..+..+......++ +.-.+..... -+.+-..+++.+ +..
T Consensus 496 --arRrdlKliVtSATm~--a~-----kf~nfFgn~p~f~IpGRTyP---V~~~~~k~p~---eDYVeaavkq~v~Ihl~ 560 (1042)
T KOG0924|consen 496 --ARRRDLKLIVTSATMD--AQ-----KFSNFFGNCPQFTIPGRTYP---VEIMYTKTPV---EDYVEAAVKQAVQIHLS 560 (1042)
T ss_pred --HhhccceEEEeecccc--HH-----HHHHHhCCCceeeecCCccc---eEEEeccCch---HHHHHHHHhhheEeecc
Confidence 0024688999999985 22 23333333322222111111 1111111222 223333333332 333
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----------CCceEEecCCCCHHHHHHHHHhhccCC-cEEEEeCcccccCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----------GIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~-~vLv~T~~~~~GiDip 490 (548)
...+-+|||....+..+..+..++.. ++.+..+++.|+.+-+.++++.-.++. +++|||++++..+.+|
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 46688999999988777666665542 567899999999999999987776554 9999999999999999
Q ss_pred CCCEEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecC
Q 045757 491 NVSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 491 ~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
++.+||..++ |.|.++--||.|||||.| +|.|+-+|+++
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 9999998764 678889999999999984 89999999985
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.3e-19 Score=186.99 Aligned_cols=392 Identities=20% Similarity=0.204 Sum_probs=233.3
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
+|. .|++.|.-.--.+ .+.-|..|.||.|||+++.+|++...+. +..+-|++||..|+.|
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~-----------------G~~VhvvT~ndyLA~R 138 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS-----------------GKGVHVVTVNDYLARR 138 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc-----------------CCCEEEEeCCHHHHHH
Confidence 464 6777776443333 4568999999999999999999876653 5789999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-----HhhcChhhhhccccccCeeEEEEecchh
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-----LNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-----~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
-++++..+....| +.+.++.++.... ...++|+++|..-+ .+.+...... ...+.+.++|+||+|.
T Consensus 139 D~e~m~~l~~~lG---l~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~--~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 139 DANWMRPLYEFLG---LSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDD--KFQRELNFAVIDEVDS 213 (913)
T ss_pred HHHHHHHHhcccC---CEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhh--hcccccceeEechhhh
Confidence 9999999999988 8999888875543 24599999999885 3333211111 1246789999999998
Q ss_pred hc-c---------------CChHHHHHHHHhhhhccHHH----H---hhhcccCcccccccC----------C--CCC--
Q 045757 253 LL-C---------------GSFQNQVIRLINMFRFDEKQ----L---SRMNESGVEKPLEMD----------N--SSL-- 295 (548)
Q Consensus 253 l~-~---------------~~~~~~~~~i~~~l~~~~~~----~---~~~~~~~~~~~~~~~----------~--~~~-- 295 (548)
++ + ...+..+..++..+...... . ..+..........+. . ..+
T Consensus 214 iLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~ 293 (913)
T PRK13103 214 ILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLA 293 (913)
T ss_pred eeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcc
Confidence 74 1 11223334444444211000 0 000000000000000 0 000
Q ss_pred ---CCCCchhhhhh-------h--------hhhcccCCCCC-----------CCCC----------ccccccccccCccc
Q 045757 296 ---TQPDLQDEENL-------Q--------DEYISDEGNFE-----------GDSD----------VEGLTEETKSGSIK 336 (548)
Q Consensus 296 ---~~~~~~~~~~~-------~--------~~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~ 336 (548)
...+..+...+ . ..|+-..+... +..+ +++++...++...-
T Consensus 294 ~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~A 373 (913)
T PRK13103 294 EGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLA 373 (913)
T ss_pred cchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEE
Confidence 00000110000 0 01111111100 0001 11111122222222
Q ss_pred chhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCC-CCcccccccccccCcccccceeeecchhhHHHHHHHHH
Q 045757 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP-DADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVK 415 (548)
Q Consensus 337 ~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 415 (548)
+-.++.+...| .+..+||.|...... . +...+. ....++.. ...... -....+......|..++++.+.
T Consensus 374 sIT~QnfFr~Y---~kLsGMTGTa~te~~----E-f~~iY~l~Vv~IPTn-kP~~R~-D~~d~vy~t~~eK~~Ai~~ei~ 443 (913)
T PRK13103 374 STTFQNYFRLY---NKLSGMTGTADTEAF----E-FRQIYGLDVVVIPPN-KPLARK-DFNDLVYLTAEEKYAAIITDIK 443 (913)
T ss_pred eehHHHHHHhc---chhccCCCCCHHHHH----H-HHHHhCCCEEECCCC-CCcccc-cCCCeEEcCHHHHHHHHHHHHH
Confidence 22344443443 467888888742222 2 222222 22222211 111111 1122456667778888888877
Q ss_pred HHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCC-----
Q 045757 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP----- 490 (548)
Q Consensus 416 ~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip----- 490 (548)
... ..+.++||-+.|+...+.+++.|.+.++....+++.-...| .+++..--....|.|||++++||.||.
T Consensus 444 ~~~---~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa~AG~~GaVTIATNMAGRGTDIkLg~n~ 519 (913)
T PRK13103 444 ECM---ALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKE-AEIIAQAGRPGALTIATNMAGRGTDILLGGNW 519 (913)
T ss_pred HHH---hCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhH-HHHHHcCCCCCcEEEeccCCCCCCCEecCCch
Confidence 653 57899999999999999999999999999877777643222 334333223459999999999999994
Q ss_pred --------------------------------CCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 491 --------------------------------NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 491 --------------------------------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
+==|||-...+.|..-=.|-.||+||.|.+|.+-.|++-.|.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 520 EVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223788888899999999999999999999999999888653
No 125
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=3.4e-19 Score=178.71 Aligned_cols=397 Identities=15% Similarity=0.135 Sum_probs=227.7
Q ss_pred CCcHHHHhhhhccc----CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.++++|++++..+. ++...|+-..+|.|||...+..+ ..+.+. . .--.++|||||. .++.|
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFL-aaL~~S-----------~--k~~~paLIVCP~-Tii~q 269 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFL-AALHHS-----------G--KLTKPALIVCPA-TIIHQ 269 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHH-HHHhhc-----------c--cccCceEEEccH-HHHHH
Confidence 36999999998775 56789999999999998743333 333221 0 113789999997 78899
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc-------------------CCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP-------------------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------------------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
|++++..+... +++..+++..... ..+..|+|+|++.+.-.-.. ..-...
T Consensus 270 W~~E~~~w~p~-----~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~------l~~~~W 338 (923)
T KOG0387|consen 270 WMKEFQTWWPP-----FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDD------LLGILW 338 (923)
T ss_pred HHHHHHHhCcc-----eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcc------cccccc
Confidence 99999999754 7888887765521 23467999999987433110 111246
Q ss_pred eEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCC------CCCCCCCchhhhhhhhhhcccCCC
Q 045757 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDN------SSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 243 ~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
+++|+||.|++-+.+ .++...+..++...+... .+.|+--.. .....++.-.........+.....
T Consensus 339 ~y~ILDEGH~IrNpn--s~islackki~T~~RiIL------SGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~ 410 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN--SKISLACKKIRTVHRIIL------SGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPIN 410 (923)
T ss_pred cEEEecCcccccCCc--cHHHHHHHhccccceEEe------eCccccchHHHHHHHhhhccCCcccchHHHHhhhhhhee
Confidence 799999999985443 334444444432211110 011100000 000000000000000111111100
Q ss_pred CCCCCCccccc-------cccccCcccchhhHHHHhh-----hc-ccceeEEEeeccCCCccchhhhhhhhc-----CCC
Q 045757 317 FEGDSDVEGLT-------EETKSGSIKKKDWRRVRKN-----YQ-RSKQYIFVAATLPINGKKTAGAVLKQM-----FPD 378 (548)
Q Consensus 317 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----~~-~~~q~v~~SAT~~~~~~~~~~~~l~~~-----~~~ 378 (548)
..+..-..... ......-+.....+|.... ++ ..-++++++-|. ..+..+..++... +..
T Consensus 411 ~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~--~QR~~Y~~fl~s~~v~~i~ng 488 (923)
T KOG0387|consen 411 RGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTK--LQRRLYQRFLNSSEVNKILNG 488 (923)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccH--HHHHHHHHHhhhHHHHHHHcC
Confidence 00000000000 0011111222233333322 11 233556655553 3333333332210 000
Q ss_pred ----CcccccccccccCcccccce-----------eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHH
Q 045757 379 ----ADWISGNYLHFHNPRLKEKW-----------IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKI 443 (548)
Q Consensus 379 ----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~ 443 (548)
..-+..-.-.+..+.+.... -......++..+...+.... ..+.++|+|.+++.....+..+
T Consensus 489 ~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~---kqg~rvllFsqs~~mLdilE~f 565 (923)
T KOG0387|consen 489 KRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK---KQGDRVLLFSQSRQMLDILESF 565 (923)
T ss_pred CccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHh---hCCCEEEEehhHHHHHHHHHHH
Confidence 00000000011112111110 11222335555655555554 5677999999999999999999
Q ss_pred HH-HcCCceEEecCCCCHHHHHHHHHhhc-cCC--cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCC
Q 045757 444 LK-TAGIECYCYHKDLSLEERAKTLVNFQ-EKG--GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ 519 (548)
Q Consensus 444 L~-~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~--~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 519 (548)
|. ..++.+..++|..+...|..++++|. +.. -+|++|.+.+-|+|+.+++.||.||+.|++..=.|..-|+-|.|+
T Consensus 566 L~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 566 LRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred HHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 99 57999999999999999999999999 333 568899999999999999999999999999999999999999999
Q ss_pred cce--EEEEeecCchhHHHHHHHH
Q 045757 520 YGL--VTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 520 ~G~--~i~~~~~~~~~~~~~i~~~ 541 (548)
+-. +|-|++....+..-.-++.
T Consensus 646 kkdV~VYRL~t~gTIEEkiY~rQI 669 (923)
T KOG0387|consen 646 KKDVVVYRLMTAGTIEEKIYHRQI 669 (923)
T ss_pred ccceEEEEEecCCcHHHHHHHHHH
Confidence 744 5556666655444444443
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=8.9e-19 Score=192.27 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCC--ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcc
Q 045757 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGI--ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAA 483 (548)
Q Consensus 407 ~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~ 483 (548)
...+.+.+.+... ..++++|||++|....+.+++.|..... ....+.-+++...|.++++.|+ ++..||++|..+
T Consensus 737 ~~~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sF 814 (928)
T PRK08074 737 IEEVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcc
Confidence 3455555554432 3467999999999999999999976432 1222333444456888999999 667899999999
Q ss_pred cccCCCCC--CCEEEEecCCCC------------------------------HHHHHHHhcccccCCCcceEEEEeecC-
Q 045757 484 ARGIDIPN--VSHVIQADFATS------------------------------AVDFLHRVGRTARAGQYGLVTSLYTES- 530 (548)
Q Consensus 484 ~~GiDip~--v~~VI~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~~- 530 (548)
++|||+|+ ++.||...+|.. ...+.|.+||.-|..++--++++++.+
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~ 894 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRL 894 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcc
Confidence 99999997 588998887641 234689999999987653355566665
Q ss_pred -chhHHHHHHHHH
Q 045757 531 -NRDLVDTIRRAA 542 (548)
Q Consensus 531 -~~~~~~~i~~~~ 542 (548)
...+-+.+-+++
T Consensus 895 ~~k~Yg~~~l~sL 907 (928)
T PRK08074 895 TTTSYGKYFLESL 907 (928)
T ss_pred ccchHHHHHHHhC
Confidence 455656665554
No 127
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.83 E-value=4.8e-18 Score=174.86 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhcc-----CCcEEEEeCcc
Q 045757 409 ALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE-----KGGVFVCTDAA 483 (548)
Q Consensus 409 ~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-----~~~vLv~T~~~ 483 (548)
.+.+.+...+. ..+++++|.+.|....+.+++.|...--....+.|+.+ .+..++++|+. +..||++|+.+
T Consensus 457 ~~~~~~~~~~~--~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sf 532 (636)
T TIGR03117 457 NVSLSTAAILR--KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGA 532 (636)
T ss_pred HHHHHHHHHHH--HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcc
Confidence 34444444432 35679999999999999999999764323344455432 45678889983 46999999999
Q ss_pred cccCCC--------C--CCCEEEEecCCCC-------------------------HHHHHHHhcccccCCCc--ceEEEE
Q 045757 484 ARGIDI--------P--NVSHVIQADFATS-------------------------AVDFLHRVGRTARAGQY--GLVTSL 526 (548)
Q Consensus 484 ~~GiDi--------p--~v~~VI~~~~p~s-------------------------~~~~~Qr~GR~gR~g~~--G~~i~~ 526 (548)
++|||+ | .++.||...+|+. ...+.|-+||.-|...+ --++.+
T Consensus 533 weGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~i 612 (636)
T TIGR03117 533 WTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHM 612 (636)
T ss_pred ccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEE
Confidence 999999 3 3999999888732 23478999999998665 334445
Q ss_pred eecC-chhHHHHHHHHH
Q 045757 527 YTES-NRDLVDTIRRAA 542 (548)
Q Consensus 527 ~~~~-~~~~~~~i~~~~ 542 (548)
++.+ ...+.+.+....
T Consensus 613 lD~R~~~~yg~~~~~~~ 629 (636)
T TIGR03117 613 LDGRIHWPYMESWQESV 629 (636)
T ss_pred EeCCCCchhHHHHHHHH
Confidence 5544 445555555544
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=1.2e-19 Score=189.46 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=105.9
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c---CCcEEEEeCcccccCCCCCCCEEEE
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E---KGGVFVCTDAAARGIDIPNVSHVIQ 497 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~---~~~vLv~T~~~~~GiDip~v~~VI~ 497 (548)
..++++|||.+-+....-|+++|...++..-.++|.+..+.|+..++.|. . ...+|+||.+.+.|||+..+|.||+
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 56899999999999999999999999999999999999999999999998 2 3478999999999999999999999
Q ss_pred ecCCCCHHHHHHHhcccccCCCcce--EEEEeecCch--hHHHHHH
Q 045757 498 ADFATSAVDFLHRVGRTARAGQYGL--VTSLYTESNR--DLVDTIR 539 (548)
Q Consensus 498 ~~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~~--~~~~~i~ 539 (548)
||..+++..=+|...||+|.|+.-. +|-|++.+.+ +.+++-.
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 9999999999999999999999754 7888888744 4444433
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.1e-18 Score=180.69 Aligned_cols=318 Identities=21% Similarity=0.285 Sum_probs=203.1
Q ss_pred CCcHHHHhhhhcccCC----CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG----KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g----~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.+.+-|..++..+... +..++.+.||||||-+|+-.+.+.+. . |..+|+|+|-++|..|
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~----------------GkqvLvLVPEI~Ltpq 260 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q----------------GKQVLVLVPEIALTPQ 260 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c----------------CCEEEEEeccccchHH
Confidence 5678899999888654 67899999999999998776666553 2 6799999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecch
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah 251 (548)
+.+.++.... .++..++++-... .+...|+|+|-..+ ...+.++.+||+||-|
T Consensus 261 ~~~rf~~rFg------~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-----------F~Pf~~LGLIIvDEEH 323 (730)
T COG1198 261 LLARFKARFG------AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-----------FLPFKNLGLIIVDEEH 323 (730)
T ss_pred HHHHHHHHhC------CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-----------cCchhhccEEEEeccc
Confidence 9998887764 4566666664432 57899999998776 2336789999999999
Q ss_pred hhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccc
Q 045757 252 MLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETK 331 (548)
Q Consensus 252 ~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (548)
-- +|... .
T Consensus 324 D~---sYKq~-~-------------------------------------------------------------------- 331 (730)
T COG1198 324 DS---SYKQE-D-------------------------------------------------------------------- 331 (730)
T ss_pred cc---cccCC-c--------------------------------------------------------------------
Confidence 42 11100 0
Q ss_pred cCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchh------
Q 045757 332 SGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT------ 405 (548)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 405 (548)
......++.-.++.. ..+.++|+-|||.+.+....+. ...+ ....+.........+. ...+....+.
T Consensus 332 ~prYhARdvA~~Ra~-~~~~pvvLgSATPSLES~~~~~---~g~y-~~~~L~~R~~~a~~p~--v~iiDmr~e~~~~~~~ 404 (730)
T COG1198 332 GPRYHARDVAVLRAK-KENAPVVLGSATPSLESYANAE---SGKY-KLLRLTNRAGRARLPR--VEIIDMRKEPLETGRS 404 (730)
T ss_pred CCCcCHHHHHHHHHH-HhCCCEEEecCCCCHHHHHhhh---cCce-EEEEccccccccCCCc--ceEEeccccccccCcc
Confidence 000111111112221 2467899999998743222110 0000 0001111111111111 1111111111
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHH---------------------------------------------
Q 045757 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAV--------------------------------------------- 440 (548)
Q Consensus 406 ~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l--------------------------------------------- 440 (548)
-...+++.+.+.+ ..+..+|+|.|.+..+-.+
T Consensus 405 lS~~Ll~~i~~~l---~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~C 481 (730)
T COG1198 405 LSPALLEAIRKTL---ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPEC 481 (730)
T ss_pred CCHHHHHHHHHHH---hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCC
Confidence 2356667776665 5677888888887755322
Q ss_pred ---------------HHHHHHc--CCceEEecCCCCHHH--HHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecC
Q 045757 441 ---------------TKILKTA--GIECYCYHKDLSLEE--RAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADF 500 (548)
Q Consensus 441 ---------------~~~L~~~--~~~~~~~~~~~~~~~--r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~ 500 (548)
++.|++. +..+..++++.+... -...++.|. ++.+|||.|.+++.|.|+|+++.|...|.
T Consensus 482 gs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~a 561 (730)
T COG1198 482 GSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDA 561 (730)
T ss_pred CCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEec
Confidence 2222211 335666777765433 456788898 77899999999999999999999887775
Q ss_pred CC------------CHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 501 AT------------SAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 501 p~------------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
.. ...-+.|-.||+||.+.+|.+++-....|-..++.+.
T Consensus 562 D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 562 DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 42 2345788999999999999999887777755555443
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.3e-18 Score=177.69 Aligned_cols=390 Identities=18% Similarity=0.204 Sum_probs=230.8
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
+|. .|++.|.-.--.+..| -|..+.||-|||+++.+|++-..+. |..|=|++.+.-|+.-
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-----------------GkgVhVVTvNdYLA~R 134 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-----------------GKGVIVSTVNEYLAER 134 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-----------------CCceEEEecchhhhhh
Confidence 465 7888887776665555 5899999999999999998765543 5678899999999998
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhhc
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l~ 254 (548)
=.+++..+....| +.+.+...+.... ...+||+++|..-+ .+.|...-. ......+.+.+.|+||+|.++
T Consensus 135 Dae~mg~vy~fLG---LsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 135 DAEEMGKVFNFLG---LSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred hHHHHHHHHHHhC---CceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 8888888888888 8888777654432 35799999998765 333322110 001124568899999999774
Q ss_pred -cC---------------ChHHHHHHHHhhhhccH-----HHHh-hhcccCcccccccCCCCCCCCCchhh---hhh---
Q 045757 255 -CG---------------SFQNQVIRLINMFRFDE-----KQLS-RMNESGVEKPLEMDNSSLTQPDLQDE---ENL--- 306 (548)
Q Consensus 255 -~~---------------~~~~~~~~i~~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--- 306 (548)
+. ..+..+..++..+.... +... .+............ ......+..+. +.+
T Consensus 212 IDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l-~i~nLy~~~n~~l~h~i~~A 290 (925)
T PRK12903 212 IDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFF-KLKNLYDIENSELVHRIQNA 290 (925)
T ss_pred ecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHc-CCCcccChhhHHHHHHHHHH
Confidence 11 12333344444333210 0000 00000000000000 00000000000 000
Q ss_pred ---------hhhhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccceeEEE
Q 045757 307 ---------QDEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFV 356 (548)
Q Consensus 307 ---------~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~ 356 (548)
...|+-..+... +.. .++++....++...-.-.++.+...| .+..+|
T Consensus 291 L~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y---~kLsGM 367 (925)
T PRK12903 291 LRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLF---KKLSGM 367 (925)
T ss_pred HHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc---chhhcc
Confidence 001111111100 000 01111112222222233344444444 467888
Q ss_pred eeccCCCccchhhhhhhhcCCCCcccccccccccCcccc---cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCC
Q 045757 357 AATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK---EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANT 433 (548)
Q Consensus 357 SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s 433 (548)
|.|..... ..+.+-|.-....++ .+.|... ...+......|..++++.+.... ..+.++||.|.|
T Consensus 368 TGTA~te~----~Ef~~iY~l~Vv~IP-----TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~---~~gqPVLVgT~S 435 (925)
T PRK12903 368 TGTAKTEE----QEFIDIYNMRVNVVP-----TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVH---KKGQPILIGTAQ 435 (925)
T ss_pred CCCCHHHH----HHHHHHhCCCEEECC-----CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHH---hcCCCEEEEeCc
Confidence 88864221 222222111122221 1112111 12455666778888887776653 578999999999
Q ss_pred hhHHHHHHHHHHHcCCceEEecCCCCHHHHHH-HHHhhccCCcEEEEeCcccccCCCCCCC--------EEEEecCCCCH
Q 045757 434 VDAVYAVTKILKTAGIECYCYHKDLSLEERAK-TLVNFQEKGGVFVCTDAAARGIDIPNVS--------HVIQADFATSA 504 (548)
Q Consensus 434 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~-~~~~f~~~~~vLv~T~~~~~GiDip~v~--------~VI~~~~p~s~ 504 (548)
+..++.+++.|.+.|+....+++.-. +++. ++..-.....|.|||++++||.||.--. |||....+.|.
T Consensus 436 Ie~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSr 513 (925)
T PRK12903 436 VEDSETLHELLLEANIPHTVLNAKQN--AREAEIIAKAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESR 513 (925)
T ss_pred HHHHHHHHHHHHHCCCCceeecccch--hhHHHHHHhCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchH
Confidence 99999999999999999999888633 3333 3332223459999999999999996322 89999999999
Q ss_pred HHHHHHhcccccCCCcceEEEEeecCch
Q 045757 505 VDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 505 ~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
.---|..||+||.|.+|.+-.|++-.|.
T Consensus 514 RIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 514 RIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HHHHHHhcccccCCCCCcceEEEecchH
Confidence 9999999999999999999988887653
No 131
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.80 E-value=2.4e-18 Score=163.69 Aligned_cols=391 Identities=17% Similarity=0.155 Sum_probs=231.5
Q ss_pred CCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
+.+.|+|++.+...+ .|..++++..+|.|||+.+ |.+...+.. ....||+||. .+-..|.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra-----------------EwplliVcPA-svrftWa 257 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA-----------------EWPLLIVCPA-SVRFTWA 257 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh-----------------cCcEEEEecH-HHhHHHH
Confidence 467899999997665 6789999999999999985 344444432 4789999997 5666778
Q ss_pred HHHHHhhcccCCCcEEEEEEeCCCCccC---CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 184 RMANALSADNGEPLVRAVAVCGGQGWPI---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
+.++.++... ..+..+.++.+... ....|.|.+++.+..+-+-- .-.++++||+||.|++-+.. ..
T Consensus 258 ~al~r~lps~----~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l------~~~~~~vvI~DEsH~Lk~sk-tk 326 (689)
T KOG1000|consen 258 KALNRFLPSI----HPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDIL------KKEKYRVVIFDESHMLKDSK-TK 326 (689)
T ss_pred HHHHHhcccc----cceEEEecccCCccccccCCeEEEEEHHHHHHHHHHH------hcccceEEEEechhhhhccc-hh
Confidence 8888887654 34556666655442 33569999999985443211 13458899999999874432 22
Q ss_pred HHHHHHhhhhccHHHHhhhcccCcccccccCCCC--CCCCCchhhhhhhhhhcccCC-----CCCCCCCccccccccccC
Q 045757 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSS--LTQPDLQDEENLQDEYISDEG-----NFEGDSDVEGLTEETKSG 333 (548)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 333 (548)
.++.+...+......+..........|.++-... ....-..+..++...|..... ++.+-...+++.......
T Consensus 327 r~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~ 406 (689)
T KOG1000|consen 327 RTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKR 406 (689)
T ss_pred hhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHH
Confidence 2333332222211111112222233333222111 111222223333333322110 011111111111111111
Q ss_pred cccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHH
Q 045757 334 SIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEA 413 (548)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (548)
-...+....+.+.++..++.|.+-++-+.+.. .....+....... .+........... ........|...+.+.
T Consensus 407 lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~--~~~lv~~a~~~t~---~~~~e~~~~~l~l-~y~~tgiaK~~av~ey 480 (689)
T KOG1000|consen 407 LMIRRLKADVLKQLPPKRREVVYVSGGRIDAR--MDDLVKAAADYTK---VNSMERKHESLLL-FYSLTGIAKAAAVCEY 480 (689)
T ss_pred HHHHHHHHHHHhhCCccceEEEEEcCCccchH--HHHHHHHhhhcch---hhhhhhhhHHHHH-HHHHhcccccHHHHHH
Confidence 12222333455667777776665555443322 2222222111000 0000000000000 1112233456666666
Q ss_pred HHHHh-hccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc--cCCcE-EEEeCcccccCCC
Q 045757 414 VKERL-EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--EKGGV-FVCTDAAARGIDI 489 (548)
Q Consensus 414 l~~~~-~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~v-Lv~T~~~~~GiDi 489 (548)
+..+. --...+.+.+|||......+.+...+.+.++....++|..+..+|....+.|+ ++..| +++-.+++.|+++
T Consensus 481 i~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 481 ILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred HHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 65532 12356789999999999999999999999999999999999999999999999 34444 5566888999999
Q ss_pred CCCCEEEEecCCCCHHHHHHHhcccccCCCcce--EEEEeecCc
Q 045757 490 PNVSHVIQADFATSAVDFLHRVGRTARAGQYGL--VTSLYTESN 531 (548)
Q Consensus 490 p~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~ 531 (548)
...+.|++..+++++.-++|.-.|+.|.|++.. ++.|+.+..
T Consensus 561 tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT 604 (689)
T KOG1000|consen 561 TAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGT 604 (689)
T ss_pred eccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCc
Confidence 999999999999999999999999999999865 445566653
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=1.6e-18 Score=173.73 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC-C-cEEEEeC
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK-G-GVFVCTD 481 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~-~-~vLv~T~ 481 (548)
.|+..|...|.+.. ..+.++|||.+-.....-|...|...++....++|...-..|+.+++.|. ++ . .+|++|.
T Consensus 761 gK~r~L~~LLp~~k---~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 761 GKCRKLKELLPKIK---KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hhHhHHHHHHHHHh---hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeec
Confidence 34555555555543 45789999999999999999999999999999999999999999999998 33 3 6789999
Q ss_pred cccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcc--eEEEEeecCchh
Q 045757 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG--LVTSLYTESNRD 533 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G--~~i~~~~~~~~~ 533 (548)
+.+.|||+..+++||.||...++-+=.|.-.|++|.|+.- .++-|+++...+
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999999999999999999999999999999874 467788887554
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=3.8e-18 Score=177.21 Aligned_cols=352 Identities=14% Similarity=0.103 Sum_probs=196.7
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
..|+ .|++.|.-+.-.+ .+.-|..+.||.|||+++.+|++-..+ .+..|-|++++..|+.
T Consensus 72 ~lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----------------~G~~VhVvT~NdyLA~ 131 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-----------------TGKGVHIVTVNDYLAK 131 (870)
T ss_pred HhCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-----------------cCCceEEEeCCHHHHH
Confidence 3466 5788887655444 466899999999999999999865443 3678999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-----HhhcChhhhhccccccCeeEEEEecch
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-----LNNIDPKRRRRMEFVRGVKYVVFDEAD 251 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-----~~~l~~~~~~~~~~~~~~~~vV~DEah 251 (548)
+-.+++..+....| +.+.++.++.+.. ...+||+++|..-+ .+.+...... ...+.+.+.|+||+|
T Consensus 132 RD~e~m~pvy~~LG---Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~--~v~r~~~faIVDEvD 206 (870)
T CHL00122 132 RDQEWMGQIYRFLG---LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSD--VVQRPFNYCIIDEVD 206 (870)
T ss_pred HHHHHHHHHHHHcC---CceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHH--hhccccceeeeecch
Confidence 99999999999988 8888887765533 35689999998644 4444322211 124568999999999
Q ss_pred hhc-cC---------------ChHHHHHHHHhhhhccHHHHh-------hhcccCcccccccC-CCCCCC--CCchh-h-
Q 045757 252 MLL-CG---------------SFQNQVIRLINMFRFDEKQLS-------RMNESGVEKPLEMD-NSSLTQ--PDLQD-E- 303 (548)
Q Consensus 252 ~l~-~~---------------~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~--~~~~~-~- 303 (548)
.++ +. .....+..+...+........ .+.......-.... ...+.. ..+.. .
T Consensus 207 SiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~ 286 (870)
T CHL00122 207 SILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYIL 286 (870)
T ss_pred hheeccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHH
Confidence 764 21 122233333333322100000 00000000000000 000000 00000 0
Q ss_pred hhhhh--------hhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcccceeE
Q 045757 304 ENLQD--------EYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYI 354 (548)
Q Consensus 304 ~~~~~--------~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v 354 (548)
..+.. .|+-..+... +.. .+++++...+......-.++.+...| ..+.
T Consensus 287 ~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y---~kL~ 363 (870)
T CHL00122 287 NALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLY---PKLS 363 (870)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhC---chhc
Confidence 00000 1111111100 000 11122222222222223344444444 3688
Q ss_pred EEeeccCCCccchhhhhhhhcCCCC-cccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCC
Q 045757 355 FVAATLPINGKKTAGAVLKQMFPDA-DWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANT 433 (548)
Q Consensus 355 ~~SAT~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s 433 (548)
+||.|.... ...+...+... ..++.. .+..... ....+......|..++++.+... ...+.++||-|.|
T Consensus 364 GMTGTa~te-----~~Ef~~iY~l~vv~IPtn-kp~~R~d-~~d~v~~t~~~K~~AI~~ei~~~---~~~grPVLIgT~S 433 (870)
T CHL00122 364 GMTGTAKTE-----ELEFEKIYNLEVVCIPTH-RPMLRKD-LPDLIYKDELSKWRAIADECLQM---HQTGRPILIGTTT 433 (870)
T ss_pred ccCCCCHHH-----HHHHHHHhCCCEEECCCC-CCcccee-CCCeEEeCHHHHHHHHHHHHHHH---HhcCCCEEEeeCC
Confidence 898887421 22222222222 122111 1111111 12234555666777777776654 3678999999999
Q ss_pred hhHHHHHHHHHHHcCCceEEecCCCCH-HHHHHHHHhhccCCcEEEEeCcccccCCCC
Q 045757 434 VDAVYAVTKILKTAGIECYCYHKDLSL-EERAKTLVNFQEKGGVFVCTDAAARGIDIP 490 (548)
Q Consensus 434 ~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~r~~~~~~f~~~~~vLv~T~~~~~GiDip 490 (548)
+...+.+++.|.+.|++...+++.-.. +.-.+++..-.....|.|||++++||.||.
T Consensus 434 Ie~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 434 IEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEEEeccccCCCcCee
Confidence 999999999999999999999887322 222344444334559999999999999983
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=1.6e-17 Score=171.13 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhcc---CC-cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcc
Q 045757 438 YAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE---KG-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGR 513 (548)
Q Consensus 438 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~-~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR 513 (548)
+.+...++-.|..+..+||+|+..+|+.+++.|.+ .. -.|.+|.+.+.||++-+++.||.+|..+|++.=.|.++|
T Consensus 609 dl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR 688 (776)
T KOG0390|consen 609 DLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMAR 688 (776)
T ss_pred HHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHH
Confidence 33333334448899999999999999999999982 32 457778999999999999999999999999999999999
Q ss_pred cccCCCcceEE--EEeecC
Q 045757 514 TARAGQYGLVT--SLYTES 530 (548)
Q Consensus 514 ~gR~g~~G~~i--~~~~~~ 530 (548)
+-|.||.-.|+ .|++..
T Consensus 689 ~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 689 AWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred hccCCCcceEEEEEeecCC
Confidence 99999987655 344444
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.4e-18 Score=167.77 Aligned_cols=334 Identities=11% Similarity=0.013 Sum_probs=213.6
Q ss_pred HHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 99 l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
+..+.-+....+|.+++..+.+|++.++.-.|.+||+++|.+......... +....+++.|++++
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---------------~~s~~~~~~~~~~~ 343 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---------------HATNSLLPSEMVEH 343 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---------------cccceecchhHHHH
Confidence 345556678999999999999999999999999999999998887766543 45678999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEE--EeCCCC------ccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecc
Q 045757 179 CEQVVRMANALSADNGEPLVRAVA--VCGGQG------WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEA 250 (548)
Q Consensus 179 ~~q~~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEa 250 (548)
++...+...-...... ..+... .+.+.. ..+.+.+++++.|.+.......+..-+..++-...+++.||+
T Consensus 344 ~~~~~~~~~V~~~~I~--~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~ 421 (1034)
T KOG4150|consen 344 LRNGSKGQVVHVEVIK--ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSC 421 (1034)
T ss_pred hhccCCceEEEEEehh--hhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccce
Confidence 8876442211110000 011111 111111 124678999999998865544333333334556788999999
Q ss_pred hhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcccccccc
Q 045757 251 DMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEET 330 (548)
Q Consensus 251 h~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (548)
|.+ ..-++..+...++.+-
T Consensus 422 ~~Y-~~~~~~~~~~~~R~L~------------------------------------------------------------ 440 (1034)
T KOG4150|consen 422 ALY-LFPTKALAQDQLRALS------------------------------------------------------------ 440 (1034)
T ss_pred eee-ecchhhHHHHHHHHHH------------------------------------------------------------
Confidence 954 3445554433333221
Q ss_pred ccCcccchhhHHHHhhh--cccceeEEEeeccCCCccchhhhhhhhcCCC--Ccccc--c-----ccccccCccccccee
Q 045757 331 KSGSIKKKDWRRVRKNY--QRSKQYIFVAATLPINGKKTAGAVLKQMFPD--ADWIS--G-----NYLHFHNPRLKEKWI 399 (548)
Q Consensus 331 ~~~~~~~~~~~~~~~~~--~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~--~~~~~--~-----~~~~~~~~~~~~~~~ 399 (548)
++-+.+ ..+.|++-.++|+.... ..+++++.. ...+. + ......++.+.. ..
T Consensus 441 -----------~L~~~F~~~~~~~~~~~~~~~K~~~-----~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P-~~ 503 (1034)
T KOG4150|consen 441 -----------DLIKGFEASINMGVYDGDTPYKDRT-----RLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPP-TS 503 (1034)
T ss_pred -----------HHHHHHHhhcCcceEeCCCCcCCHH-----HHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCC-cc
Confidence 000000 13456666666664221 122222211 11111 1 111111221110 01
Q ss_pred eecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc----CC----ceEEecCCCCHHHHHHHHHhhc
Q 045757 400 EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----GI----ECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 400 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
....+.++.+....+.+.+ ..+-++|.||.+++.|+.+-...++. +. .+.-|.|+-..++|.++....-
T Consensus 504 ~~~~~~~i~E~s~~~~~~i---~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F 580 (1034)
T KOG4150|consen 504 KSEKSSKVVEVSHLFAEMV---QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF 580 (1034)
T ss_pred hhhhhhHHHHHHHHHHHHH---HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh
Confidence 1222344555555554443 34679999999999999877665543 21 3456889999999999988766
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
|+..=+|+|++++.|||+.+++.|++.++|.|...+.|..|||||.+++..++.+....
T Consensus 581 ~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 581 GGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred CCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 67788999999999999999999999999999999999999999999988877766654
No 136
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.78 E-value=5.1e-17 Score=174.65 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCCHHHHHHHHHhhc-cCC-cEEEEeCcc
Q 045757 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQ-EKG-GVFVCTDAA 483 (548)
Q Consensus 407 ~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~-~~~-~vLv~T~~~ 483 (548)
...+...+...+. ..++++|||++|....+.+++.+...... ....+|. .++.+.++.|+ ++. .++|+|..+
T Consensus 464 ~~~~~~~i~~~~~--~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf 538 (654)
T COG1199 464 LAKLAAYLREILK--ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHh--hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccc
Confidence 3344444444332 34569999999999999999999977653 3334444 34558889998 333 799999999
Q ss_pred cccCCCCC--CCEEEEecCCC------------------------------CHHHHHHHhcccccCCCcceEEEEeecC-
Q 045757 484 ARGIDIPN--VSHVIQADFAT------------------------------SAVDFLHRVGRTARAGQYGLVTSLYTES- 530 (548)
Q Consensus 484 ~~GiDip~--v~~VI~~~~p~------------------------------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~- 530 (548)
++|||+|+ ++.||..+.|. -+..+.|.+||+-|.-.+--++++++.+
T Consensus 539 ~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~ 618 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRY 618 (654)
T ss_pred cCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccc
Confidence 99999986 58889888773 2445799999999976554455566654
Q ss_pred -chhHHHHHHHHH
Q 045757 531 -NRDLVDTIRRAA 542 (548)
Q Consensus 531 -~~~~~~~i~~~~ 542 (548)
...+-+.+-+.+
T Consensus 619 ~~~~y~~~l~~~l 631 (654)
T COG1199 619 ATKRYGKLLLDSL 631 (654)
T ss_pred hhhhHHHHHHHhC
Confidence 222444444443
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=157.09 Aligned_cols=329 Identities=17% Similarity=0.168 Sum_probs=205.2
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
...|...+.++...+.+++..--.....+.+.+..+.+++-+++.|.||||||...-...++.....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------------- 90 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------------- 90 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------------
Confidence 4458888899988888877643345666677778888889999999999999986544455554433
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHH-HHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccC
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMA-NALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~ 241 (548)
...+...-|.+--+.++.... ..+--..| -.++...--.+-...+.-+-++|.++|++-..+. -+++.
T Consensus 91 ---~~~v~CTQprrvaamsva~RVadEMDv~lG---~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~-----p~l~~ 159 (699)
T KOG0925|consen 91 ---LTGVACTQPRRVAAMSVAQRVADEMDVTLG---EEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD-----PLLGR 159 (699)
T ss_pred ---ccceeecCchHHHHHHHHHHHHHHhccccc---hhccccccccccCChhHHHHHhcchHHHHHHhhC-----ccccc
Confidence 255667778887777765432 33322222 1111111111111122234467777776554332 23788
Q ss_pred eeEEEEecchhhccCCh-HHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC
Q 045757 242 VKYVVFDEADMLLCGSF-QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320 (548)
Q Consensus 242 ~~~vV~DEah~l~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
+++||+||||. ... ...+.-+++.+.
T Consensus 160 y~viiLDeahE---RtlATDiLmGllk~v~-------------------------------------------------- 186 (699)
T KOG0925|consen 160 YGVIILDEAHE---RTLATDILMGLLKEVV-------------------------------------------------- 186 (699)
T ss_pred ccEEEechhhh---hhHHHHHHHHHHHHHH--------------------------------------------------
Confidence 99999999994 111 111222222111
Q ss_pred CCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceee
Q 045757 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIE 400 (548)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (548)
.. .++.++|.||||+. ..-++.++.+...+..... +. +...+..
T Consensus 187 ------------------------~~-rpdLk~vvmSatl~-------a~Kfq~yf~n~Pll~vpg~--~P--vEi~Yt~ 230 (699)
T KOG0925|consen 187 ------------------------RN-RPDLKLVVMSATLD-------AEKFQRYFGNAPLLAVPGT--HP--VEIFYTP 230 (699)
T ss_pred ------------------------hh-CCCceEEEeecccc-------hHHHHHHhCCCCeeecCCC--Cc--eEEEecC
Confidence 11 14688999999985 2234455555444433221 11 1111111
Q ss_pred ecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc---------CCceEEecCCCCHHHHHHHHHhhc
Q 045757 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA---------GIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 401 ~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
-.....+++.+..+.+... ....+-+|||....++.+..++.+... ...|..+| +.++..+++--.
T Consensus 231 e~erDylEaairtV~qih~-~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p 305 (699)
T KOG0925|consen 231 EPERDYLEAAIRTVLQIHM-CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAP 305 (699)
T ss_pred CCChhHHHHHHHHHHHHHh-ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCC
Confidence 1222334444444444322 245889999999999999888888643 34677787 334444433332
Q ss_pred ----c--CCcEEEEeCcccccCCCCCCCEEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEe
Q 045757 472 ----E--KGGVFVCTDAAARGIDIPNVSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLY 527 (548)
Q Consensus 472 ----~--~~~vLv~T~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~ 527 (548)
+ +.+|+|+|.+++..+.++++.+||.-++ |.|..+-.||.||+||. ++|+|+.+|
T Consensus 306 ~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLY 384 (699)
T KOG0925|consen 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLY 384 (699)
T ss_pred cccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEee
Confidence 1 3389999999999999999999997664 67899999999999997 899999999
Q ss_pred ecC
Q 045757 528 TES 530 (548)
Q Consensus 528 ~~~ 530 (548)
++.
T Consensus 385 te~ 387 (699)
T KOG0925|consen 385 TEE 387 (699)
T ss_pred cHH
Confidence 986
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.77 E-value=6e-18 Score=143.09 Aligned_cols=119 Identities=38% Similarity=0.593 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcc
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAA 483 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~ 483 (548)
.+...+.+.+.+.. ..++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|+ +...||++|.++
T Consensus 12 ~k~~~i~~~i~~~~---~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHL---KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcc---cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 56677777666642 25789999999999999999999999999999999999999999999999 556999999999
Q ss_pred cccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEE
Q 045757 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526 (548)
Q Consensus 484 ~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~ 526 (548)
++|+|+|++++||+++.|++...|.|++||++|.|+.|.++.+
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999999988753
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=6.4e-17 Score=167.79 Aligned_cols=348 Identities=18% Similarity=0.166 Sum_probs=196.2
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|. .|++.|.-.--.+ .+.-|..|.||-|||+++.+|++...+. |..|-||+++..|+..
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~-----------------GkgVhVVTvNdYLA~R 141 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT-----------------GKGVHVVTVNDYLARR 141 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc-----------------CCCeEEEeCCHHHHHh
Confidence 465 6777776554444 4558999999999999999999876654 5789999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-----HhhcChhhhhccccccCeeEEEEecchh
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-----LNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-----~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
=.+++..+....| +.+.++.++.... ...+||+++|...+ .+.+...... ...+.+.+.|+||+|.
T Consensus 142 Dae~m~~vy~~LG---Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~--~vqR~~~faIVDEvDS 216 (939)
T PRK12902 142 DAEWMGQVHRFLG---LSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISE--VVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHHHHHHHHHHhC---CeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccc--cccCccceEEEecccc
Confidence 9999999999888 8888887664432 45799999999877 4444322111 1256789999999997
Q ss_pred hc-cCC---------------hHHHHHHHHhhhhccHHH--HhhhcccCcccccccC------------CCCCCCCCc--
Q 045757 253 LL-CGS---------------FQNQVIRLINMFRFDEKQ--LSRMNESGVEKPLEMD------------NSSLTQPDL-- 300 (548)
Q Consensus 253 l~-~~~---------------~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~-- 300 (548)
++ +.. .......+...+...... -...........+.+. ...+.....
T Consensus 217 ILIDEArTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~ 296 (939)
T PRK12902 217 ILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPW 296 (939)
T ss_pred eeeccCCCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHH
Confidence 74 211 222223333332210000 0000000000000000 000000000
Q ss_pred -hhhhh-h--------hhhhcccCCCCC-----------CCC----------CccccccccccCcccchhhHHHHhhhcc
Q 045757 301 -QDEEN-L--------QDEYISDEGNFE-----------GDS----------DVEGLTEETKSGSIKKKDWRRVRKNYQR 349 (548)
Q Consensus 301 -~~~~~-~--------~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (548)
..... + ...|+...+... +.. .+++++-..+......-.++.+...|
T Consensus 297 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y-- 374 (939)
T PRK12902 297 AHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLY-- 374 (939)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC--
Confidence 00000 0 001111111100 000 11111112222222222334444444
Q ss_pred cceeEEEeeccCCCccchhhhhhhhcCC-CCcccccccccccCccc---ccceeeecchhhHHHHHHHHHHHhhccCCCC
Q 045757 350 SKQYIFVAATLPINGKKTAGAVLKQMFP-DADWISGNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETS 425 (548)
Q Consensus 350 ~~q~v~~SAT~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 425 (548)
.+..+||.|...... . +...+. ....++ .+.+.. ....+......|..++++.+.... ..+.
T Consensus 375 -~kLsGMTGTa~te~~----E-f~~iY~l~Vv~IP-----TnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~---~~Gr 440 (939)
T PRK12902 375 -PKLAGMTGTAKTEEV----E-FEKTYKLEVTVIP-----TNRPRRRQDWPDQVYKTEIAKWRAVANETAEMH---KQGR 440 (939)
T ss_pred -chhcccCCCCHHHHH----H-HHHHhCCcEEEcC-----CCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHH---hCCC
Confidence 477888888642221 2 222221 111111 111211 122345566778888887777653 5789
Q ss_pred cEEEEeCChhHHHHHHHHHHHcCCceEEecCC-CCHHHHHHHHHhhccCCcEEEEeCcccccCCCC
Q 045757 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKD-LSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP 490 (548)
Q Consensus 426 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip 490 (548)
++||-|.|+...+.+++.|.+.|+....+++. .+.+.-.+++..-.....|-|||++++||.||.
T Consensus 441 PVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 441 PVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEEeccCCCCCcCEe
Confidence 99999999999999999999999999999886 332333445544334559999999999999984
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=2.6e-17 Score=159.07 Aligned_cols=264 Identities=19% Similarity=0.204 Sum_probs=174.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEE
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAV 203 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 203 (548)
++-+|||.||||+- +++++.+ ....++--|.+-|+.++++.+++.+ +.+-.+
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~-----------------aksGvycGPLrLLA~EV~~r~na~g-------ipCdL~ 245 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS-----------------AKSGVYCGPLRLLAHEVYDRLNALG-------IPCDLL 245 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh-----------------hccceecchHHHHHHHHHHHhhhcC-------CCcccc
Confidence 45679999999975 5566644 3578999999999999999999886 777777
Q ss_pred eCCCCccCC----CCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhh
Q 045757 204 CGGQGWPIG----KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRM 279 (548)
Q Consensus 204 ~g~~~~~~~----~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~ 279 (548)
+|.....-. .+..+=||-|+..- -..+++.|+||+++|-+...+-.+.+.+-.+..+
T Consensus 246 TGeE~~~~~~~~~~a~hvScTVEM~sv------------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad------- 306 (700)
T KOG0953|consen 246 TGEERRFVLDNGNPAQHVSCTVEMVSV------------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD------- 306 (700)
T ss_pred ccceeeecCCCCCcccceEEEEEEeec------------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh-------
Confidence 777654322 37788889887621 2347899999999998877665554443222100
Q ss_pred cccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeec
Q 045757 280 NESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAAT 359 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT 359 (548)
.....+--
T Consensus 307 ----------------------------------------------------------------------EiHLCGep-- 314 (700)
T KOG0953|consen 307 ----------------------------------------------------------------------EIHLCGEP-- 314 (700)
T ss_pred ----------------------------------------------------------------------hhhccCCc--
Confidence 00000000
Q ss_pred cCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHH
Q 045757 360 LPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYA 439 (548)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~ 439 (548)
..-.+....++..-++. .. .. +.....-.-.+..+.-+.+ -.++-++| |-|++....
T Consensus 315 ---svldlV~~i~k~TGd~v---ev----~~-------YeRl~pL~v~~~~~~sl~n-----lk~GDCvV-~FSkk~I~~ 371 (700)
T KOG0953|consen 315 ---SVLDLVRKILKMTGDDV---EV----RE-------YERLSPLVVEETALGSLSN-----LKPGDCVV-AFSKKDIFT 371 (700)
T ss_pred ---hHHHHHHHHHhhcCCee---EE----Ee-------ecccCcceehhhhhhhhcc-----CCCCCeEE-EeehhhHHH
Confidence 00011111111100000 00 00 0000000001122222222 23445544 446778888
Q ss_pred HHHHHHHcCCc-eEEecCCCCHHHHHHHHHhhc---cCCcEEEEeCcccccCCCCCCCEEEEecCC---------CCHHH
Q 045757 440 VTKILKTAGIE-CYCYHKDLSLEERAKTLVNFQ---EKGGVFVCTDAAARGIDIPNVSHVIQADFA---------TSAVD 506 (548)
Q Consensus 440 l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~---~~~~vLv~T~~~~~GiDip~v~~VI~~~~p---------~s~~~ 506 (548)
+...+.+.+.. +++++|+++++.|..-...|. ++++||||||+.++|+|+ +++.||+++.- .+..+
T Consensus 372 ~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 372 VKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred HHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHH
Confidence 99999988876 999999999999999999998 456999999999999999 89999999863 57888
Q ss_pred HHHHhcccccCCCc---ceEEEEeecC
Q 045757 507 FLHRVGRTARAGQY---GLVTSLYTES 530 (548)
Q Consensus 507 ~~Qr~GR~gR~g~~---G~~i~~~~~~ 530 (548)
..|-+|||||.|.. |.+.+|..++
T Consensus 451 ikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHHhhcccccccCCcCceEEEeeHhh
Confidence 99999999999753 8888877664
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.75 E-value=2.5e-15 Score=160.16 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-----cCCcEEEE
Q 045757 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-----EKGGVFVC 479 (548)
Q Consensus 406 ~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~vLv~ 479 (548)
....+.+.+...+. .++++|||++|....+.+++.|... +..+ ..+|. ..|..+++.|+ ++..||++
T Consensus 519 ~~~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g 591 (697)
T PRK11747 519 HTAEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFG 591 (697)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEE
Confidence 44556666655543 3456999999999999999998753 3333 33454 35677887776 34589999
Q ss_pred eCcccccCCCCC--CCEEEEecCCCC------------------------------HHHHHHHhcccccCCCcceEEEEe
Q 045757 480 TDAAARGIDIPN--VSHVIQADFATS------------------------------AVDFLHRVGRTARAGQYGLVTSLY 527 (548)
Q Consensus 480 T~~~~~GiDip~--v~~VI~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~G~~i~~~ 527 (548)
|..+++|||+|+ +++||...+|.. ...+.|.+||.-|...+--+++++
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 999999999997 899999887731 123688999999986553345566
Q ss_pred ecC--chhHHHHHHHHH
Q 045757 528 TES--NRDLVDTIRRAA 542 (548)
Q Consensus 528 ~~~--~~~~~~~i~~~~ 542 (548)
+.+ ...+-+.+.+++
T Consensus 672 D~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 672 DRRLLTKRYGKRLLDAL 688 (697)
T ss_pred cccccchhHHHHHHHhC
Confidence 665 445556665554
No 142
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.75 E-value=2.7e-17 Score=149.94 Aligned_cols=147 Identities=35% Similarity=0.529 Sum_probs=112.3
Q ss_pred HCCCCCCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
..++..++++|.+++..+..+ +++++.++||+|||.++..++++.+... ...++||++|+..++
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------~~~~~l~~~p~~~~~ 67 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---------------KGKRVLVLVPTRELA 67 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------CCCcEEEEeCCHHHH
Confidence 356778999999999999988 9999999999999999998888877443 246899999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCC-------ccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQG-------WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
.|+...+.++..... .......++.. ......+|+++|++.+.+.+.... .....++++|+||+|+
T Consensus 68 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~----~~~~~~~~iIiDE~h~ 140 (201)
T smart00487 68 EQWAEELKKLGPSLG---LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL----LELSNVDLVILDEAHR 140 (201)
T ss_pred HHHHHHHHHHhccCC---eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC----cCHhHCCEEEEECHHH
Confidence 999999988875432 23333344433 223334999999999988875543 2355788999999999
Q ss_pred hccCChHHHHHHHHhhh
Q 045757 253 LLCGSFQNQVIRLINMF 269 (548)
Q Consensus 253 l~~~~~~~~~~~i~~~l 269 (548)
+....+...+..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 141 LLDGGFGDQLEKLLKLL 157 (201)
T ss_pred HhcCCcHHHHHHHHHhC
Confidence 87656666666666543
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=6.5e-18 Score=128.23 Aligned_cols=77 Identities=38% Similarity=0.607 Sum_probs=73.7
Q ss_pred HHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCC
Q 045757 442 KILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518 (548)
Q Consensus 442 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 518 (548)
++|+..++.+..+||+++..+|.++++.|+ ++..|||||+++++|+|+|++++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999 66799999999999999999999999999999999999999999986
No 144
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.72 E-value=6e-15 Score=144.53 Aligned_cols=320 Identities=16% Similarity=0.200 Sum_probs=222.9
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhccc-------------CCCc------EE-----------EEEEeCCCCc
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN-------------GEPL------VR-----------AVAVCGGQGW 209 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~-------------~~~~------~~-----------~~~~~g~~~~ 209 (548)
+..+..+++||||+|++..|.++++.+.++.... |.+. .. ...+.|+.+.
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 4445568899999999999999999888876541 1000 00 0011111110
Q ss_pred c-----------------CCCCcEEEeChHHHHhhcCh--hhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 210 P-----------------IGKPDVIVSTPAALLNNIDP--KRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 210 ~-----------------~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
. ....||||++|=.|...+.. .+....++++.+.++|+|.||.++-.+ +.++..+++.+.
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN 189 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLN 189 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhc
Confidence 0 23689999999999887764 345556789999999999999776444 356666666664
Q ss_pred ccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcc-
Q 045757 271 FDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR- 349 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (548)
..++ .....++.+++.++..
T Consensus 190 ~~P~-----------------------------------------------------------~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 190 LQPK-----------------------------------------------------------KSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCC-----------------------------------------------------------CCCCCCHHHHHHHHHcC
Confidence 2110 1123566777766554
Q ss_pred ----cceeEEEeeccCCCccchhhhhhhhcCCCCccccc----ccccccCcccccceeeecc-------hhhHHHHHHHH
Q 045757 350 ----SKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG----NYLHFHNPRLKEKWIEVTV-------DTQVDALIEAV 414 (548)
Q Consensus 350 ----~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l 414 (548)
-+|.+++|+...+....+....+.++......... ..+......+.+.+..++. +.++....+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 58999999999877666666544443322222111 1122233344444444332 33455555544
Q ss_pred HHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc--ccCCCCC
Q 045757 415 KERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA--RGIDIPN 491 (548)
Q Consensus 415 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~--~GiDip~ 491 (548)
...+......+++|||++|--+--++.++|++.++....+|...+..+-.+.-..|. |+.+||+.|.-+. +-..+.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 444332456789999999999999999999999999999999999999999999998 7779999998776 6688899
Q ss_pred CCEEEEecCCCCHHHHHHHhcccccCCC------cceEEEEeecCchhHHHHHH
Q 045757 492 VSHVIQADFATSAVDFLHRVGRTARAGQ------YGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 492 v~~VI~~~~p~s~~~~~Qr~GR~gR~g~------~G~~i~~~~~~~~~~~~~i~ 539 (548)
+++||+|++|..+.-|...++-.+.... ...|.++|+.-|.-.+++|-
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9999999999999999888866655433 57899999999988777764
No 145
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=1.3e-16 Score=167.08 Aligned_cols=323 Identities=17% Similarity=0.176 Sum_probs=210.1
Q ss_pred CcHHHHhhhhcccC-CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~-g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
..|+|.+.++.+.+ +.++++.+|+|||||.|+-++++.. ....+++++.|.-+.+..+++.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~------------------~~~~~~vyi~p~~~i~~~~~~~ 1205 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP------------------DTIGRAVYIAPLEEIADEQYRD 1205 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC------------------ccceEEEEecchHHHHHHHHHH
Confidence 38899999998875 4789999999999999998877751 2467999999999999998887
Q ss_pred HHH-hhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 186 ANA-LSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 186 ~~~-~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
|.. +....| ..+.-++|..... ....+|+|+||++.-.+ . ..+.+++.|+||+|++. ..++..
T Consensus 1206 w~~~f~~~~G---~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q--------~iQ~v~l~i~d~lh~ig-g~~g~v 1272 (1674)
T KOG0951|consen 1206 WEKKFSKLLG---LRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q--------SIQQVDLFIVDELHLIG-GVYGAV 1272 (1674)
T ss_pred HHHhhccccC---ceEEecCCccccchHHhhhcceEEechhHHHHH-h--------hhhhcceEeeehhhhhc-ccCCce
Confidence 764 444444 6677777776554 46789999999997544 1 36789999999999875 444444
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
.+-++. . +
T Consensus 1273 ~evi~S-~-----------------------------------------------------------------------r 1280 (1674)
T KOG0951|consen 1273 YEVICS-M-----------------------------------------------------------------------R 1280 (1674)
T ss_pred EEEEee-H-----------------------------------------------------------------------H
Confidence 333333 2 2
Q ss_pred HHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHH----HHHHHHHH
Q 045757 342 RVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDA----LIEAVKER 417 (548)
Q Consensus 342 ~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~ 417 (548)
-+...+....+++.+|..+... +..++..-...+ .+.......+.....+.+-....+..... ....+..+
T Consensus 1281 ~ia~q~~k~ir~v~ls~~lana-~d~ig~s~~~v~----Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~ 1355 (1674)
T KOG0951|consen 1281 YIASQLEKKIRVVALSSSLANA-RDLIGASSSGVF----NFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH 1355 (1674)
T ss_pred HHHHHHHhheeEEEeehhhccc-hhhcccccccee----ecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH
Confidence 3334455677888888887632 222221111110 00000000000000111111112222222 23333333
Q ss_pred hhccCCCCcEEEEeCChhHHHHHHHHHHHc----------------------CCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 418 LEFGAETSRTMVFANTVDAVYAVTKILKTA----------------------GIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 418 ~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
. ..+++++||.++++.|..++..|-.. ......-|.+++.....-+-.-|. +..
T Consensus 1356 a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1356 A---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred h---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 2 46789999999999999887755221 122223388999888888888888 666
Q ss_pred cEEEEeCcccccCCCCCCCEEEEec-----------CCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQAD-----------FATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~-----------~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
.|+|.... ..|+-. ..+.||.++ .+.+..+..||+|+|.| .|.|++++......++++ ++.
T Consensus 1433 ~v~v~s~~-~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk---fl~ 1504 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK---FLY 1504 (1674)
T ss_pred EEEEEEcc-cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH---hcc
Confidence 88888766 788766 355566443 24668999999999988 578999999988876654 455
Q ss_pred cCCCC
Q 045757 544 LGQPV 548 (548)
Q Consensus 544 ~~~pv 548 (548)
+..||
T Consensus 1505 e~lPv 1509 (1674)
T KOG0951|consen 1505 EPLPV 1509 (1674)
T ss_pred CcCch
Confidence 55654
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=1.2e-16 Score=164.31 Aligned_cols=399 Identities=17% Similarity=0.176 Sum_probs=217.0
Q ss_pred CCcHHHHhhhhccc---C-CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL---S-GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~---~-g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
++.++|...+.++. + +-|.|++.++|.|||.. .+.++..+++.++ ..+.-||+||+-.|..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~-------------~~GP~LvivPlstL~NW 459 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ-------------MQGPFLIIVPLSTLVNW 459 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc-------------cCCCeEEeccccccCCc
Confidence 78999999997654 2 35899999999999987 5666777776632 25678999999988877
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc--------CCCCcEEEeChHHHHhhcChhhhhccccccC--eeEEEEecch
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP--------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRG--VKYVVFDEAD 251 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~--~~~vV~DEah 251 (548)
.. ++..+... +..+.++|..... .++++|+++|++.+.. . ...++. ..++|+||.|
T Consensus 460 ~~-Ef~kWaPS-----v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--d------k~lLsKI~W~yMIIDEGH 525 (1157)
T KOG0386|consen 460 SS-EFPKWAPS-----VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--D------KALLSKISWKYMIIDEGH 525 (1157)
T ss_pred hh-hccccccc-----eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--C------HHHHhccCCcceeecccc
Confidence 54 35555432 6667777764322 4689999999999854 1 122443 4679999999
Q ss_pred hhccCChHHHHHHHHh-hhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC-CCcccccc-
Q 045757 252 MLLCGSFQNQVIRLIN-MFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD-SDVEGLTE- 328 (548)
Q Consensus 252 ~l~~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 328 (548)
+|-+ ....+...+. +.....+.+..........|-.+.......+...+.....+.++....-..++ .+....+.
T Consensus 526 RmKN--a~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtl 603 (1157)
T KOG0386|consen 526 RMKN--AICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETL 603 (1157)
T ss_pred cccc--hhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHH
Confidence 9843 2223322222 22222111111111111111111111111111111111111121111111110 00000000
Q ss_pred --------------------------ccccCcccchhhHHHHhhhcccce---eEEEeeccCCCccchhhhhhhhcCCCC
Q 045757 329 --------------------------ETKSGSIKKKDWRRVRKNYQRSKQ---YIFVAATLPINGKKTAGAVLKQMFPDA 379 (548)
Q Consensus 329 --------------------------~~~~~~~~~~~~~~~~~~~~~~~q---~v~~SAT~~~~~~~~~~~~l~~~~~~~ 379 (548)
..+...+.++++..+...+....+ .++.-+ ..++.....+.......-
T Consensus 604 LIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~---~~g~~g~k~L~N~imqLR 680 (1157)
T KOG0386|consen 604 LIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDT---AKGKKGYKPLFNTIMQLR 680 (1157)
T ss_pred HHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCc---hhccccchhhhhHhHHHH
Confidence 000001111111111111111110 000000 001111111110000000
Q ss_pred cccccccccccCcc-cccce---eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEec
Q 045757 380 DWISGNYLHFHNPR-LKEKW---IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYH 455 (548)
Q Consensus 380 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~ 455 (548)
..+...+...+... ....+ ..+....|+..+-..+.+. ...+++++.||.-......+..+|.-.++....++
T Consensus 681 KiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKL---katgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLD 757 (1157)
T KOG0386|consen 681 KLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKL---KATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLD 757 (1157)
T ss_pred HhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHH---HhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeec
Confidence 00001111100000 00000 0111222333333333332 25689999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhc-cC--C-cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 456 KDLSLEERAKTLVNFQ-EK--G-GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 456 ~~~~~~~r~~~~~~f~-~~--~-~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
|....++|-..++.|. .+ . .+|.+|.+.+.|+|+..++.||.||..+++..+.|+..|+.|.|+.-.|-++....-
T Consensus 758 G~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 758 GQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred CCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 9999999999999998 22 2 678999999999999999999999999999999999999999999877666665554
Q ss_pred hhHHHHHHH
Q 045757 532 RDLVDTIRR 540 (548)
Q Consensus 532 ~~~~~~i~~ 540 (548)
.+.-+.|.+
T Consensus 838 ~sveE~il~ 846 (1157)
T KOG0386|consen 838 NSVEEKILA 846 (1157)
T ss_pred hHHHHHHHH
Confidence 444444443
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.69 E-value=6.3e-16 Score=161.58 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=92.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC-c--eEEecCCCCHHHHHHHHHhhccC--CcE-EEEeCcccccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI-E--CYCYHKDLSLEERAKTLVNFQEK--GGV-FVCTDAAARGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~--~~~~~~~~~~~~r~~~~~~f~~~--~~v-Lv~T~~~~~GiDip~v~~VI 496 (548)
.++|+||||+-+..+..+.+.|.+.-. . ...++|..++..|.++.++|.++ ++| |++|.+.+-|+|+.++|.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 467999999999999999998876533 3 34789999999999999999944 354 56789999999999999999
Q ss_pred EecCCCCHHHHHHHhcccccCCCcce--EEEEeecCch
Q 045757 497 QADFATSAVDFLHRVGRTARAGQYGL--VTSLYTESNR 532 (548)
Q Consensus 497 ~~~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~~ 532 (548)
+++-.|++..=+|...||+|.|++-. ++-+.+....
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 99999999999999999999998644 4445555443
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.66 E-value=5e-15 Score=141.28 Aligned_cols=128 Identities=22% Similarity=0.264 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccC--C-cEEEEeC
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEK--G-GVFVCTD 481 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~-~vLv~T~ 481 (548)
.|++++.+.+....+ ....-+.|||.+-......+...|.+.|+.|.-+.|+|+...|...++.|.++ + -+|++-.
T Consensus 620 TKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 620 TKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 456666665554432 24556899999999999999999999999999999999999999999999954 4 4577889
Q ss_pred cccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCc--ceEEEEeecCchh
Q 045757 482 AAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY--GLVTSLYTESNRD 533 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~--G~~i~~~~~~~~~ 533 (548)
+.+..+|+..+.+|+.+|++++++.-.|.-.|..|.|+. =.++.||-++..+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 999999999999999999999999999999999999974 6788898887544
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.2e-13 Score=148.79 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCC--------ceEEecCCCCHHHHHHHHHhhcc-----C
Q 045757 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGI--------ECYCYHKDLSLEERAKTLVNFQE-----K 473 (548)
Q Consensus 407 ~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~-----~ 473 (548)
...+.+.+.+... .-++.+|||++|....+.+.+.+.+.+. .+..=.. +..++.++++.|+. +
T Consensus 507 ~~~l~~~i~~~~~--~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~--~~~~~~~~l~~f~~~~~~~~ 582 (705)
T TIGR00604 507 VRNLGELLVEFSK--IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK--DAQETSDALERYKQAVSEGR 582 (705)
T ss_pred HHHHHHHHHHHhh--cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC--CcchHHHHHHHHHHHHhcCC
Confidence 3444444444432 3468999999999999999998876432 2222222 22578889999962 3
Q ss_pred CcEEEEe--CcccccCCCCC--CCEEEEecCCC-CH------------------------------HHHHHHhcccccCC
Q 045757 474 GGVFVCT--DAAARGIDIPN--VSHVIQADFAT-SA------------------------------VDFLHRVGRTARAG 518 (548)
Q Consensus 474 ~~vLv~T--~~~~~GiDip~--v~~VI~~~~p~-s~------------------------------~~~~Qr~GR~gR~g 518 (548)
..||+|+ ..+++|||+++ ++.||..++|. ++ ..+.|.+||+-|.-
T Consensus 583 gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~ 662 (705)
T TIGR00604 583 GAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHK 662 (705)
T ss_pred ceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCc
Confidence 4799999 89999999987 89999999885 11 23578999999987
Q ss_pred CcceEEEEeecC
Q 045757 519 QYGLVTSLYTES 530 (548)
Q Consensus 519 ~~G~~i~~~~~~ 530 (548)
++=-++++++++
T Consensus 663 ~D~G~iillD~R 674 (705)
T TIGR00604 663 DDYGSIVLLDKR 674 (705)
T ss_pred CceEEEEEEehh
Confidence 663355566654
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=7.8e-15 Score=154.04 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=106.7
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVF 477 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vL 477 (548)
.+......|..++++.+.... ..+.++||-+.|+...+.+++.|...|+....+++.....| .+++..-.....|-
T Consensus 605 ~vy~t~~eK~~Aii~ei~~~~---~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~AG~~GaVT 680 (1112)
T PRK12901 605 LVYKTKREKYNAVIEEITELS---EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAEAGQPGTVT 680 (1112)
T ss_pred eEecCHHHHHHHHHHHHHHHH---HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHhcCCCCcEE
Confidence 455566778888888877764 57899999999999999999999999999888877644333 23433333445999
Q ss_pred EEeCcccccCCCC--------CCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 478 VCTDAAARGIDIP--------NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 478 v~T~~~~~GiDip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
|||++++||.||. +==|||-...+.|..--.|-.||+||.|.+|.+..|++-.|.
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999996 345788888999999999999999999999999988887753
No 151
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.3e-14 Score=138.02 Aligned_cols=376 Identities=15% Similarity=0.220 Sum_probs=240.8
Q ss_pred CCCCCcHHHHhhhhcccCCCcEEEEc-cCCCch--hHHhHHHHHHHHHHHc----CCCCC----------CCCCCCCCCC
Q 045757 103 GFGRPSIVQAASVGPVLSGKDVVIAA-ETGSGK--THSYLVPLIEKLCTAL----GDSEN----------SNSDKEPTPP 165 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~ii~a-~TGsGK--Tl~~~l~il~~~~~~~----~~~~~----------~~~~~~~~~~ 165 (548)
.-..+++.|.+.+..+.+.+|++..- ..+.|+ +..|++-++..++..- +.+.. ...-+.....
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34568999999999999999998653 334555 5667777777766421 11110 0011233446
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE------EEeCC-CCcc----------------------------
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV------AVCGG-QGWP---------------------------- 210 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~------~~~g~-~~~~---------------------------- 210 (548)
+++||||||+++-|-.+++.+..++.+.+.....|. .-+++ ....
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 789999999999999999999888665543211121 11111 1100
Q ss_pred ----------CCCCcEEEeChHHHHhhcC--hhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhh
Q 045757 211 ----------IGKPDVIVSTPAALLNNID--PKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR 278 (548)
Q Consensus 211 ----------~~~~~Ilv~Tp~~l~~~l~--~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~ 278 (548)
....||+||+|-.|..++. ..+.+..++++.+.++|+|-||.++..+| +.+..++.++...+..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k--- 448 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSK--- 448 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCccc---
Confidence 1358999999999988886 34556677899999999999998876655 4566666666422111
Q ss_pred hcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcc-----ccee
Q 045757 279 MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQR-----SKQY 353 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~q~ 353 (548)
....++.|+|.++.. -+|.
T Consensus 449 --------------------------------------------------------~h~~DfSRVR~wyL~~qsr~~rQt 472 (698)
T KOG2340|consen 449 --------------------------------------------------------QHDVDFSRVRMWYLDGQSRYFRQT 472 (698)
T ss_pred --------------------------------------------------------ccCCChhheehheeccHHHHHHHH
Confidence 122344555554443 3678
Q ss_pred EEEeeccCCCccchhhhhhhhcCCCCc---ccccccccccC---cccccce----eeecchhhHHHHHHHHHHHhhccCC
Q 045757 354 IFVAATLPINGKKTAGAVLKQMFPDAD---WISGNYLHFHN---PRLKEKW----IEVTVDTQVDALIEAVKERLEFGAE 423 (548)
Q Consensus 354 v~~SAT~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~ 423 (548)
++||+--.+....+....+.++..... ....+.+.... ..+-+.+ +.-..+.++..+...+.-.+.. ..
T Consensus 473 l~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k-~t 551 (698)
T KOG2340|consen 473 LLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK-RT 551 (698)
T ss_pred HHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc-cc
Confidence 888877655444444444444332211 11111111111 1111111 1112233444443333222211 23
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc--ccCCCCCCCEEEEecC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA--RGIDIPNVSHVIQADF 500 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~--~GiDip~v~~VI~~~~ 500 (548)
...+|||.++-..--++..++++..+....+|...+...-.+.-+-|- +...||+-|.-+. +-.++.+|..||+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 557899999999999999999999999888888887777777777777 7779999998776 6789999999999999
Q ss_pred CCCHHHH---HHHhcccccCCC----cceEEEEeecCchhHHHHHH
Q 045757 501 ATSAVDF---LHRVGRTARAGQ----YGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 501 p~s~~~~---~Qr~GR~gR~g~----~G~~i~~~~~~~~~~~~~i~ 539 (548)
|..+.-| +-|.+|+.-.|+ .-.|.++|++.|.-.++.|-
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9998766 556677654443 35699999999988777664
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.60 E-value=2.2e-14 Score=122.93 Aligned_cols=116 Identities=34% Similarity=0.527 Sum_probs=87.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+++++.++||+|||.+++..+....... ...+++|++|++.++.|+.+.+...... + ..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~---~~~~ 61 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------------KGGQVLVLAPTRELANQVAERLKELFGE-G---IKVG 61 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-C---cEEE
Confidence 4689999999999999888777766432 3579999999999999999988887754 2 5566
Q ss_pred EEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 202 AVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 202 ~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
.+.+..... ....+|+++|++.+........ .....++++|+||+|.+.......
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~----~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 62 YLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK----LSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred EEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC----cchhcCCEEEEeCHHHHhhcchHH
Confidence 666655443 5689999999999876664332 224568899999999886655443
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.60 E-value=6.6e-15 Score=132.40 Aligned_cols=126 Identities=22% Similarity=0.277 Sum_probs=86.7
Q ss_pred CCcHHHHhhhhcccC-------CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 106 RPSIVQAASVGPVLS-------GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~-------g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
+|+++|.+++..+.+ ++++++.+|||+|||++++..+.+.. .++|+++|+..|
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~--------------------~~~l~~~p~~~l 62 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA--------------------RKVLIVAPNISL 62 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH--------------------CEEEEEESSHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc--------------------cceeEecCHHHH
Confidence 589999999988873 58999999999999999775555444 179999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEE-e----------CCC-------CccCCCCcEEEeChHHHHhhcChhh-------h
Q 045757 179 CEQVVRMANALSADNGEPLVRAVAV-C----------GGQ-------GWPIGKPDVIVSTPAALLNNIDPKR-------R 233 (548)
Q Consensus 179 ~~q~~~~~~~~~~~~~~~~~~~~~~-~----------g~~-------~~~~~~~~Ilv~Tp~~l~~~l~~~~-------~ 233 (548)
+.|+.+.+..+.... ...... . ... .......+++++|.+.+........ .
T Consensus 63 ~~Q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 138 (184)
T PF04851_consen 63 LEQWYDEFDDFGSEK----YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARR 138 (184)
T ss_dssp HHHHHHHHHHHSTTS----EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------G
T ss_pred HHHHHHHHHHhhhhh----hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhh
Confidence 999999997665432 111110 0 000 0113568899999999977654321 1
Q ss_pred hccccccCeeEEEEecchhhcc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLC 255 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~ 255 (548)
.........++||+||||++..
T Consensus 139 ~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 139 SYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp CHHGGGGSESEEEEETGGCTHH
T ss_pred hhhhccccCCEEEEehhhhcCC
Confidence 1122355788999999998643
No 154
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.59 E-value=4.4e-15 Score=114.03 Aligned_cols=80 Identities=41% Similarity=0.637 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC
Q 045757 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA 517 (548)
Q Consensus 439 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 517 (548)
.+++.|+..++.+..+||+++.++|..+++.|+ ++..|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 467888888999999999999999999999999 5669999999999999999999999999999999999999999997
Q ss_pred C
Q 045757 518 G 518 (548)
Q Consensus 518 g 518 (548)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=1.2e-13 Score=137.41 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=102.8
Q ss_pred ecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc---cCCc-E
Q 045757 401 VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ---EKGG-V 476 (548)
Q Consensus 401 ~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~---~~~~-v 476 (548)
.....++..+++.+...+ .....+++|..+-.....-+...|++.|.....+||.....+|+.+++.|. ++.+ .
T Consensus 725 ~r~S~Ki~~~l~~le~i~--~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVm 802 (901)
T KOG4439|consen 725 DRPSCKIAMVLEILETIL--TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVM 802 (901)
T ss_pred ccchhHHHHHHHHHHHHh--hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEE
Confidence 334556667777666652 245668888888888889999999999999999999999999999999997 3344 5
Q ss_pred EEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEE
Q 045757 477 FVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVT 524 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i 524 (548)
|++-.+.+.|+|+-+.+|+|..|+-|++.--.|...|.-|.|+...++
T Consensus 803 LlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 803 LLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred EEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 667788999999999999999999999999999999999999986655
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.46 E-value=8e-12 Score=130.41 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=99.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCC---cEEEEeCcccccCCCCCCCEEEEe
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG---GVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
..++++|||++-.+...-|..+|+-.|+....++|....++|+..+++|..+. ..|++|...+.|||+-++|.||+|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 57899999999999999999999999999999999999999999999999333 668899999999999999999999
Q ss_pred cCCCCHHHHHHHhcccccCCCc--ceEEEEeecCchh
Q 045757 499 DFATSAVDFLHRVGRTARAGQY--GLVTSLYTESNRD 533 (548)
Q Consensus 499 ~~p~s~~~~~Qr~GR~gR~g~~--G~~i~~~~~~~~~ 533 (548)
|..+|+..-.|.-.|+.|.|+. =..|-|++++..+
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 9999999888888888888875 4467777776443
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.43 E-value=1.1e-11 Score=131.54 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=69.7
Q ss_pred EEEEeCChhHHHHHHHHHHHc------CCceEEecCCCCHHHHHHHHHhh----------------------c-----cC
Q 045757 427 TMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLEERAKTLVNF----------------------Q-----EK 473 (548)
Q Consensus 427 ~lVF~~s~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f----------------------~-----~~ 473 (548)
.+|-.++++.+-.++..|-+. .+.+.+||+......|..+++.. + +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 577778888888888877654 24578899999877777666543 0 12
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCc
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY 520 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 520 (548)
..|+|+|.+.+.|+|+ +.+.+|- .|.+....+|++||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccC
Confidence 3799999999999999 6776654 356799999999999998753
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.43 E-value=7.5e-12 Score=124.68 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=99.9
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC-cEEEEeCcccccCCCCCCCEEEEec
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG-GVFVCTDAAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~-~vLv~T~~~~~GiDip~v~~VI~~~ 499 (548)
..++++|+|++-.+....+.++|...++....++|......|..++.+|+ .+. -+|++|.+.+.|||+..++.||+||
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYd 1121 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYD 1121 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEec
Confidence 57899999999999999999999999999999999999999999999999 444 8899999999999999999999999
Q ss_pred CCCCHHHHHHHhcccccCCCcce--EEEEeecCc
Q 045757 500 FATSAVDFLHRVGRTARAGQYGL--VTSLYTESN 531 (548)
Q Consensus 500 ~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~ 531 (548)
..+++.--.|...||.|-|+.-. ++-+++...
T Consensus 1122 SDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1122 SDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999998744 555555543
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.42 E-value=2.8e-11 Score=126.92 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEe
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (548)
+..+-+|||||-+|+-.+-+.+. . +..+|||+|.+.|..|+.+.+++.... ..+..++
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-~----------------Gk~vLvLvPEi~lt~q~~~rl~~~f~~-----~~v~~lh 221 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-A----------------GRGALVVVPDQRDVDRLEAALRALLGA-----GDVAVLS 221 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-c----------------CCeEEEEecchhhHHHHHHHHHHHcCC-----CcEEEEC
Confidence 34444699999998766655553 2 578999999999999999999877642 2466677
Q ss_pred CCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 205 GGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 205 g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
++.+.. .+..+|+|+|-..+ ..-+.++.+||+||-|.
T Consensus 222 S~l~~~~R~~~w~~~~~G~~~IViGtRSAv-----------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 222 AGLGPADRYRRWLAVLRGQARVVVGTRSAV-----------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEcceeE-----------EeccCCCCEEEEEcCCc
Confidence 765432 46789999998766 23467899999999994
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.37 E-value=5.5e-11 Score=123.02 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCC--CCEEEEec
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPN--VSHVIQAD 499 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~--v~~VI~~~ 499 (548)
..++++-||++|...++.+++........+..+++.-... .+. . -++.+|++-|.+...|+++-. .+-|+-|=
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv~-~-W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DVE-S-WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---ccc-c-ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 4578899999999999999999999999999998876554 221 1 256799999999999999954 34455442
Q ss_pred CC----CCHHHHHHHhcccccCCCcceEEEEeec
Q 045757 500 FA----TSAVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 500 ~p----~s~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
-| .++.+..|++||+-.-. ....++.++.
T Consensus 355 k~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred cCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 22 46778999999996654 3445545544
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.29 E-value=9e-11 Score=131.77 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=104.1
Q ss_pred hhHHHHHHHH-HHHhhccCCCC--cEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhcc--CC-cEEE
Q 045757 405 TQVDALIEAV-KERLEFGAETS--RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQE--KG-GVFV 478 (548)
Q Consensus 405 ~~~~~l~~~l-~~~~~~~~~~~--~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~-~vLv 478 (548)
.+...+.+.+ .... ..+. +++||++.......+...|...++....++|.++...|..+++.|.. +. .+++
T Consensus 692 ~k~~~l~~ll~~~~~---~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLL---EEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHH---hhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 4555555555 3332 3455 99999999999999999999999899999999999999999999994 33 6778
Q ss_pred EeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcce--EEEEeecCc
Q 045757 479 CTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGL--VTSLYTESN 531 (548)
Q Consensus 479 ~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~ 531 (548)
++.+.+.|+|+-..++||++|..+++....|...|+.|.|+... ++.++..+.
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 88999999999999999999999999999999999999998765 455555554
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.26 E-value=9.3e-11 Score=114.19 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEE
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 199 (548)
..+.++++.++|+|||+..+.. +..+... ........+|||||. .+..||..++.++..... ++
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~-~~~l~~~-----------~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~---~~ 87 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIAL-ISYLKNE-----------FPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS---LR 87 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHH-HHHHHHC-----------CTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T---S-
T ss_pred CCCCEEEEECCCCCchhhhhhh-hhhhhhc-----------cccccccceeEeecc-chhhhhhhhhcccccccc---cc
Confidence 3468999999999999885544 4444332 111112259999999 888999999999985433 57
Q ss_pred EEEEeCCC------CccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 200 AVAVCGGQ------GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 200 ~~~~~g~~------~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
+..+.|.. .......+++|+|++.+............ .--++++||+||+|.+
T Consensus 88 v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l-~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 88 VIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDL-KQIKWDRVIVDEAHRL 146 (299)
T ss_dssp EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHH-HTSEEEEEEETTGGGG
T ss_pred ccccccccccccccccccccceeeecccccccccccccccccc-ccccceeEEEeccccc
Confidence 77777776 33456789999999999822111111111 1124889999999987
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.24 E-value=1.2e-10 Score=121.38 Aligned_cols=382 Identities=20% Similarity=0.227 Sum_probs=213.6
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
.+|+=.+.+..+.-...-+..+.||-|||+++.+|+.-..+ .+..+.++..+.-|+.--.++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----------------~gkgVhvVTvNdYLA~RDae~m 141 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----------------AGKGVHVVTVNDYLARRDAEWM 141 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc-----------------CCCCcEEeeehHHhhhhCHHHH
Confidence 45555556666666777899999999999999998876554 3567899999999999989999
Q ss_pred HHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-Hhhc----ChhhhhccccccCeeEEEEecchhhc---
Q 045757 187 NALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNI----DPKRRRRMEFVRGVKYVVFDEADMLL--- 254 (548)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l----~~~~~~~~~~~~~~~~vV~DEah~l~--- 254 (548)
.++....| +.++....+.... ...+||.++|-..| .+.+ ...... .....+.+.|+||+|.++
T Consensus 142 ~~l~~~LG---lsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee--~vqr~~~faIvDEvDSILIDE 216 (822)
T COG0653 142 GPLYEFLG---LSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEE--KVQRGLNFAIVDEVDSILIDE 216 (822)
T ss_pred HHHHHHcC---CceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHH--hhhccCCeEEEcchhheeeec
Confidence 99988888 7777776665433 34699999998765 2222 211111 124468899999999764
Q ss_pred -------cC------ChHHHHHHHHhhhhccH------HHH-hhhcccCcccccccCCCCCCCCCchhhhhh--------
Q 045757 255 -------CG------SFQNQVIRLINMFRFDE------KQL-SRMNESGVEKPLEMDNSSLTQPDLQDEENL-------- 306 (548)
Q Consensus 255 -------~~------~~~~~~~~i~~~l~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (548)
.+ ..+..+..++..+.... +.. ..+............. ...+.+..++
T Consensus 217 ARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~----~~~Ly~~en~~~~h~~~~ 292 (822)
T COG0653 217 ARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLG----IENLYDLENVNLVHHLNQ 292 (822)
T ss_pred cccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhC----cccccchhhHHHHhhHHH
Confidence 11 23444445544333221 000 0000000000000000 0001111111
Q ss_pred ----hhhhcccCCCCCCCCC---ccccccccc------------------------cCcccchhhHHHHhhhcccceeEE
Q 045757 307 ----QDEYISDEGNFEGDSD---VEGLTEETK------------------------SGSIKKKDWRRVRKNYQRSKQYIF 355 (548)
Q Consensus 307 ----~~~~~~~~~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~q~v~ 355 (548)
...+..+......+.+ +...++... +...-+.-++.+ +.--....+
T Consensus 293 alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~---fR~y~kl~g 369 (822)
T COG0653 293 ALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNL---FRLYPKLAG 369 (822)
T ss_pred HHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHH---HhhhhhhcC
Confidence 0011111111111111 111111111 111111112222 222234455
Q ss_pred EeeccCCCccchhhhhhhhcCCCCcccccccccccCccc---ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeC
Q 045757 356 VAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432 (548)
Q Consensus 356 ~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~ 432 (548)
|+.|.......+..-+ .-....+ ....+.+ ....+......|+.+.++.+.... ..++++||-+.
T Consensus 370 mTGTa~te~~EF~~iY----~l~vv~i-----PTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~---~~gqPvLvgT~ 437 (822)
T COG0653 370 MTGTADTEEEEFDVIY----GLDVVVI-----PTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERH---EKGQPVLVGTV 437 (822)
T ss_pred CCCcchhhhhhhhhcc----CCceeec-----cCCCcccCCCCccccccchHHHHHHHHHHHHHHH---hcCCCEEEcCc
Confidence 5555432222211111 0011111 1111111 122334455667777777776653 67899999999
Q ss_pred ChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCC-cEEEEeCcccccCCCCCCC-----------EEEEecC
Q 045757 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG-GVFVCTDAAARGIDIPNVS-----------HVIQADF 500 (548)
Q Consensus 433 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~vLv~T~~~~~GiDip~v~-----------~VI~~~~ 500 (548)
++...+.+.+.|.+.+++...+...-. +|..-+-...|.. .|-|||.++++|-||.--. +||-..-
T Consensus 438 sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTER 515 (822)
T COG0653 438 SIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTER 515 (822)
T ss_pred ceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEeccc
Confidence 999999999999999999877777644 5555555555544 8999999999999995222 3444444
Q ss_pred CCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 501 ATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 501 p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
-.|-.-=-|-.||+||.|.+|..-.|++-.|
T Consensus 516 hESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 516 HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred chhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 4455555689999999999999886666543
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.23 E-value=7.2e-11 Score=112.67 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCcHHHHhhh----hcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASV----GPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i----~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|+|.|.+.+ ..+.+|+++++.||||+|||++|++|++..+.... ....+.+++++++|..+..|
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~-----------~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFP-----------ERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCc-----------ccccccceeEEeccHHHHHH
Confidence 4699999955 45557899999999999999999999987765430 00023489999999999999
Q ss_pred HHHHHHHh
Q 045757 182 VVRMANAL 189 (548)
Q Consensus 182 ~~~~~~~~ 189 (548)
....+++.
T Consensus 77 ~i~~l~~~ 84 (289)
T smart00488 77 RLEELRKL 84 (289)
T ss_pred HHHHHHhc
Confidence 87777665
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.23 E-value=7.2e-11 Score=112.67 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCcHHHHhhh----hcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASV----GPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i----~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|+|.|.+.+ ..+.+|+++++.||||+|||++|++|++..+.... ....+.+++++++|..+..|
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~-----------~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFP-----------ERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCc-----------ccccccceeEEeccHHHHHH
Confidence 4699999955 45557899999999999999999999987765430 00023489999999999999
Q ss_pred HHHHHHHh
Q 045757 182 VVRMANAL 189 (548)
Q Consensus 182 ~~~~~~~~ 189 (548)
....+++.
T Consensus 77 ~i~~l~~~ 84 (289)
T smart00489 77 RLEELRKL 84 (289)
T ss_pred HHHHHHhc
Confidence 87777665
No 166
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.22 E-value=2.8e-10 Score=117.06 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=92.2
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----------------------CCceEEecCCCCHHHHHHHHHhhccCC-----
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----------------------GIECYCYHKDLSLEERAKTLVNFQEKG----- 474 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~----- 474 (548)
.-+.+.|||.++......+..+|.-. |...+.++|..+..+|......|.+..
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 34679999999999999999988653 556788999999999999999998422
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEE
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~ 525 (548)
-.||+|.+.+.|||+-+++.||+||..|++.--.|.+=|+-|.|+..-|++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 479999999999999999999999999999999999999999999877663
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.17 E-value=1.8e-10 Score=94.18 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=67.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEE
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 199 (548)
.|+-.++-..+|+|||--.+--++...+.. +.++|||.||+.++..+.+.++... ++
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------~~rvLvL~PTRvva~em~~aL~~~~-------~~ 59 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------------RLRVLVLAPTRVVAEEMYEALKGLP-------VR 59 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------------T--EEEEESSHHHHHHHHHHTTTSS-------EE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------------cCeEEEecccHHHHHHHHHHHhcCC-------cc
Confidence 455678899999999998666677766665 7899999999999999988776432 33
Q ss_pred EEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 200 ~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
.....-.. ...++.-|-+.|+..+...+.+.. ...++++||+||+|..
T Consensus 60 ~~t~~~~~-~~~g~~~i~vMc~at~~~~~~~p~-----~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 60 FHTNARMR-THFGSSIIDVMCHATYGHFLLNPC-----RLKNYDVIIMDECHFT 107 (148)
T ss_dssp EESTTSS-----SSSSEEEEEHHHHHHHHHTSS-----CTTS-SEEEECTTT--
T ss_pred cCceeeec-cccCCCcccccccHHHHHHhcCcc-----cccCccEEEEeccccC
Confidence 33211111 223455678888888866653321 1578999999999963
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.11 E-value=2e-09 Score=110.49 Aligned_cols=404 Identities=16% Similarity=0.135 Sum_probs=225.7
Q ss_pred CCCCcccccccccCCCCCcccccccccccccCCCCCCceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhccc
Q 045757 40 FYPLRVRFLRLNQWKGRPFRGFAAAAAVVSDKNGSSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVL 119 (548)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~ 119 (548)
..++.++...+.+|..+.+....-+ ..+...-+.. ....|..- -.+++-..++..+-...-..-.+.+..+.
T Consensus 320 ~i~wapP~anwn~w~A~nide~~la--~~~~~s~~q~-----~~~~~~~~-~d~e~~~~~a~re~lpva~~~~~i~q~v~ 391 (1282)
T KOG0921|consen 320 NISWAPPLQNWNPWRASNIDEEPLA--FMSMESISQR-----IMEKERFK-RDEALDKITAQREELPVAQYRSEILQAVA 391 (1282)
T ss_pred CCCCCCccccccccccccCcccccc--cccccCcccc-----hhhhhhhh-cccchhhhhhhhhhCcHHHHHHHHHHHHh
Confidence 4666677777888888776554433 1111110000 00111111 11222222222221112223344455666
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH-HHHhhcccCCCcE
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM-ANALSADNGEPLV 198 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~-~~~~~~~~~~~~~ 198 (548)
++..++|.+.||+|||..+.-.+++.+.+... ..-..+.+--|++..+.-+.+. ++.-+...+. .
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~------------g~~~na~v~qprrisaisiaerva~er~e~~g~--t 457 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSN------------GASFNAVVSQPRRISAISLAERVANERGEEVGE--T 457 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccc------------cccccceeccccccchHHHHHHHHHhhHHhhcc--c
Confidence 77888999999999999999999999987521 1123566667877666666543 3333322221 1
Q ss_pred EEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhc-cCChHHHHHHHHhhhhccHHHHh
Q 045757 199 RAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLL-CGSFQNQVIRLINMFRFDEKQLS 277 (548)
Q Consensus 199 ~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~-~~~~~~~~~~i~~~l~~~~~~~~ 277 (548)
-...+.-....+...-.|.+||-+-++..+.+. +..+.++++||.|+-. +..|. ..+++.+...+..+
T Consensus 458 vgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g-------lrg~sh~i~deiherdv~~dfl---l~~lr~m~~ty~dl- 526 (1282)
T KOG0921|consen 458 CGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG-------LRGISHVIIDEIHERDVDTDFV---LIVLREMISTYRDL- 526 (1282)
T ss_pred ccccccccccccccccceeeeccchhhhhhhhc-------ccccccccchhhhhhccchHHH---HHHHHhhhccchhh-
Confidence 111111112223344569999999998888654 5668899999999632 22232 22222222111111
Q ss_pred hhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEe
Q 045757 278 RMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVA 357 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~S 357 (548)
...+.+.++.. .-+...+..-++..+++
T Consensus 527 ---------~v~lmsatIdT-------------------------------------------d~f~~~f~~~p~~~~~g 554 (1282)
T KOG0921|consen 527 ---------RVVLMSATIDT-------------------------------------------DLFTNFFSSIPDVTVHG 554 (1282)
T ss_pred ---------hhhhhhcccch-------------------------------------------hhhhhhhccccceeecc
Confidence 11111100000 00112223345667777
Q ss_pred eccCCCccchhhhhhhhc-------------C-----CCCcccccc-----cccccCcccccceeeecchhhHHHHHHHH
Q 045757 358 ATLPINGKKTAGAVLKQM-------------F-----PDADWISGN-----YLHFHNPRLKEKWIEVTVDTQVDALIEAV 414 (548)
Q Consensus 358 AT~~~~~~~~~~~~l~~~-------------~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 414 (548)
+|++...- ......... + +.....+.. -.......+...............+.+++
T Consensus 555 rt~pvq~F-~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal 633 (1282)
T KOG0921|consen 555 RTFPVQSF-FLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEAL 633 (1282)
T ss_pred ccccHHHH-HHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHH
Confidence 77753211 000110000 0 000000000 00011111222222333334456777888
Q ss_pred HHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccccc
Q 045757 415 KERLEFGAETSRTMVFANTVDAVYAVTKILKTA-------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARG 486 (548)
Q Consensus 415 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~G 486 (548)
...+....-.+-++||.+--.....|..+|... ...+...|+.....+..++.+... +..++++.|.++..-
T Consensus 634 ~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaets 713 (1282)
T KOG0921|consen 634 LNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETS 713 (1282)
T ss_pred HhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEe
Confidence 777777777889999999999999999988754 456888999999888888877777 556999999999999
Q ss_pred CCCCCCCEEEEecC------------------CCCHHHHHHHhcccccCCCcceEEEEeecC
Q 045757 487 IDIPNVSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 487 iDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
+.+-++..||..+. ..|.....||.||+||. ++|.|..+|..-
T Consensus 714 iTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 714 ITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred eeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 98888888876553 24667789999999998 789999888765
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=6.2e-09 Score=114.49 Aligned_cols=111 Identities=21% Similarity=0.141 Sum_probs=74.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+..+|.=-||||||++ ++.+...+.+. ...+.++||+-.+.|-.|+.+.+.++...... ..
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~--------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~----~~ 334 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL--------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN----DP 334 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc--------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh----cc
Confidence 5799999999999998 44555555443 34689999999999999999999998754321 11
Q ss_pred EEeCCCC----ccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 202 AVCGGQG----WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 202 ~~~g~~~----~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
-..+... .....-.|+|||-+++......... ...-++=-+||+||||+-
T Consensus 335 ~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~--~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 335 KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDEL--ELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccc--cccCCCcEEEEEechhhc
Confidence 0000000 0123458999999999877754310 111222346899999983
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.82 E-value=1.8e-08 Score=93.50 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=94.9
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
..|+ .|++.|.-++-.+..|+ ++++.||-|||++..+|++-..+. |..|=|++.+..|+.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------------G~~V~vvT~NdyLA~ 132 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----------------GKGVHVVTSNDYLAK 132 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------------SS-EEEEESSHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------------cCCcEEEeccHHHhh
Confidence 4565 79999999887776654 999999999999998887766643 578999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHHH-hhcChhhhhccc--cccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAALL-NNIDPKRRRRME--FVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~--~~~~~~~vV~DEah~l 253 (548)
.=.+++..+....| +.+...+++.... ...++|+++|...+. +.+...-..... ..+.+.++|+||+|.+
T Consensus 133 RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 133 RDAEEMRPFYEFLG---LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred ccHHHHHHHHHHhh---hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 99999999999988 9999999887543 235889999998773 333222111111 2467999999999976
Q ss_pred c
Q 045757 254 L 254 (548)
Q Consensus 254 ~ 254 (548)
+
T Consensus 210 L 210 (266)
T PF07517_consen 210 L 210 (266)
T ss_dssp T
T ss_pred E
Confidence 4
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=1.3e-09 Score=113.99 Aligned_cols=140 Identities=16% Similarity=0.235 Sum_probs=105.7
Q ss_pred CCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
...|.|.+.+-.+. ...++++-+|||+|||++|.+.+...+... ++.++++++|-++|+....+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---------------p~~kvvyIap~kalvker~~ 991 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---------------PGSKVVYIAPDKALVKERSD 991 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---------------CCccEEEEcCCchhhccccc
Confidence 44566777665443 346899999999999999998887766443 67899999999999999998
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
.|.......| +++.-+.|+.... ...++++|+||++......+- .....++++..+|+||.|.+ ..+++..
T Consensus 992 Dw~~r~~~~g---~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw--~~r~~v~~v~~iv~de~hll-g~~rgPV 1065 (1230)
T KOG0952|consen 992 DWSKRDELPG---IKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSW--QTRKYVQSVSLIVLDEIHLL-GEDRGPV 1065 (1230)
T ss_pred chhhhcccCC---ceeEeccCccCCChhheecCceEEcccccccCccccc--cchhhhccccceeecccccc-cCCCcce
Confidence 8887765555 7888888876554 457899999999987766532 22345889999999999965 4555555
Q ss_pred HHHHH
Q 045757 262 VIRLI 266 (548)
Q Consensus 262 ~~~i~ 266 (548)
++.+.
T Consensus 1066 le~iv 1070 (1230)
T KOG0952|consen 1066 LEVIV 1070 (1230)
T ss_pred EEEEe
Confidence 44443
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.65 E-value=2.7e-07 Score=99.06 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=60.5
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC--CCcc--------eEEEEeecCchhHHHHHHHHH
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA--GQYG--------LVTSLYTESNRDLVDTIRRAA 542 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~--g~~G--------~~i~~~~~~~~~~~~~i~~~~ 542 (548)
..+.|++-.++.+|.|.|++=.++-.....|...-.|.+||.-|. .+.| .-.+++++...+.++.|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 448999999999999999999999999899999999999999984 1222 244567778888888988887
Q ss_pred HcCC
Q 045757 543 KLGQ 546 (548)
Q Consensus 543 ~~~~ 546 (548)
+.+.
T Consensus 581 ~~~~ 584 (986)
T PRK15483 581 NSDS 584 (986)
T ss_pred Hhhc
Confidence 6553
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.55 E-value=7.3e-07 Score=90.66 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=93.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC------------------ceEEecCCCCHHHHHHHHHhhccC--C--cEEEEe
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI------------------ECYCYHKDLSLEERAKTLVNFQEK--G--GVFVCT 480 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~~--~--~vLv~T 480 (548)
-+.++|||.++......+.+.|.+.-+ .-..+.|..+..+|++.++.|.++ . -++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 456899999999999999999987522 234678888999999999999843 3 588999
Q ss_pred CcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHH
Q 045757 481 DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 481 ~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i 538 (548)
.+.+.|||+-..+.+|.||.-+++.--.|.+-|+-|.|+...|+++=---|..+-++|
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 9999999999999999999999999999999999999998777754333333333333
No 174
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.55 E-value=0.00013 Score=74.38 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=80.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC-------ceEEecCCCCHHHHHHHHHhhc-----cCCcEEEEe--CcccccCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI-------ECYCYHKDLSLEERAKTLVNFQ-----EKGGVFVCT--DAAARGID 488 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~-----~~~~vLv~T--~~~~~GiD 488 (548)
-++.+++|++|......+.+..++.|+ +-.++-..-+ -..++..|. +...+|++. .-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 358999999999999999998887654 2222322222 345666674 234677775 78899999
Q ss_pred CCC--CCEEEEecCCCC--------------------------------HHHHHHHhcccccCCCcceEEEEeecC-chh
Q 045757 489 IPN--VSHVIQADFATS--------------------------------AVDFLHRVGRTARAGQYGLVTSLYTES-NRD 533 (548)
Q Consensus 489 ip~--v~~VI~~~~p~s--------------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~ 533 (548)
+.+ ++.|+..++|.. +...-|.+|||-|.-++=.+|++++.+ ...
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~RY~~p 784 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKRYARP 784 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhhhcCc
Confidence 976 889999998731 223568999999998877777777764 334
Q ss_pred HHHHHHHHH
Q 045757 534 LVDTIRRAA 542 (548)
Q Consensus 534 ~~~~i~~~~ 542 (548)
..+++-.++
T Consensus 785 ~~RKLp~WI 793 (821)
T KOG1133|consen 785 LSRKLPKWI 793 (821)
T ss_pred hhhhccHHH
Confidence 444544444
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.53 E-value=6.2e-06 Score=85.49 Aligned_cols=75 Identities=28% Similarity=0.353 Sum_probs=62.1
Q ss_pred hccCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccC--CCcce-----------EEEEeecCchhHHH
Q 045757 470 FQEKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARA--GQYGL-----------VTSLYTESNRDLVD 536 (548)
Q Consensus 470 f~~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~--g~~G~-----------~i~~~~~~~~~~~~ 536 (548)
|....+.|++--++-+|.|-|+|=.++-.....|..+=+|.+||.-|- ++.|. -.+++.+.+...+.
T Consensus 480 Fd~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~ 559 (985)
T COG3587 480 FDEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVK 559 (985)
T ss_pred cCCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHH
Confidence 445569999999999999999999999999999999999999999994 33343 34578888889999
Q ss_pred HHHHHHHc
Q 045757 537 TIRRAAKL 544 (548)
Q Consensus 537 ~i~~~~~~ 544 (548)
.|++.+..
T Consensus 560 ~LqkEI~~ 567 (985)
T COG3587 560 ALQKEIND 567 (985)
T ss_pred HHHHHHHH
Confidence 88887653
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.51 E-value=3.4e-07 Score=85.62 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=50.7
Q ss_pred CcHHHHhhhhcccCCCc-EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKD-VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~-~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
+.+-|.+|+..++.... .+|.||.|||||.+. ..++..+..... ......+.++|+++|+..-+.++.+.
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~--------~~~~~~~~~il~~~~sN~avd~~~~~ 72 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFK--------SRSADRGKKILVVSPSNAAVDNILER 72 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH---------------HCCCSS-EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchh--------hhhhhccccceeecCCchhHHHHHHH
Confidence 67889999999998888 999999999999653 334444421000 00113578999999999999999988
Q ss_pred HHH
Q 045757 186 ANA 188 (548)
Q Consensus 186 ~~~ 188 (548)
+.+
T Consensus 73 l~~ 75 (236)
T PF13086_consen 73 LKK 75 (236)
T ss_dssp HHC
T ss_pred HHh
Confidence 877
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.48 E-value=4.5e-07 Score=95.08 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=101.3
Q ss_pred chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCC---cEEEE
Q 045757 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKG---GVFVC 479 (548)
Q Consensus 403 ~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~vLv~ 479 (548)
...++..+++.+.....+ .. .+++||++-...+..+...|...++....+.|.|+...|...+..|.++. ..+++
T Consensus 520 ~s~ki~~~~~~l~~~~~s-~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~S 597 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMS-EQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMS 597 (674)
T ss_pred hhhhhHHHHHHHhhccCC-CC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHH
Confidence 345666666666632222 23 49999999999999999999989999999999999999999999998332 45677
Q ss_pred eCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEE
Q 045757 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTS 525 (548)
Q Consensus 480 T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~ 525 (548)
..+...|+|+-.+.+|+..|+.+++..--|.+-|+.|.|+.-.+.+
T Consensus 598 lkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 598 LKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 8999999999999999999999999999999999999998766553
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.40 E-value=4.8e-07 Score=79.16 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=73.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC--ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC--cccccCCCCC--CCEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI--ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD--AAARGIDIPN--VSHV 495 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~--~~~~GiDip~--v~~V 495 (548)
.++++|||++|....+.+.+.++.... ....+.. +..++.++++.|+ ++..||+++. .+++|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 468999999999999999999986542 1222222 2457888999999 5668999998 9999999996 8889
Q ss_pred EEecCCC----CH--------------------------HHHHHHhcccccCCCcceEEEEeecC
Q 045757 496 IQADFAT----SA--------------------------VDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 496 I~~~~p~----s~--------------------------~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
|..+.|. ++ ....|.+||+-|..++--++++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 9999883 11 23578899999987765555566664
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.32 E-value=8.4e-06 Score=87.68 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=36.9
Q ss_pred CCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHh
Q 045757 213 KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLIN 267 (548)
Q Consensus 213 ~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~ 267 (548)
...|+++||..|..-+... ...+..+..|||||||++....-...+.++++
T Consensus 7 ~ggi~~~T~rIl~~DlL~~----ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTG----IIPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred cCCEEEEechhhHhHHhcC----CCCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 4569999999986555333 24577899999999999976655555555553
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.32 E-value=1.3e-05 Score=74.72 Aligned_cols=144 Identities=21% Similarity=0.178 Sum_probs=92.0
Q ss_pred cccCCCHHHHHHHHHCCCCCCcHHHHhhhhccc----------CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCC
Q 045757 87 KSLGLSDRLIRALENSGFGRPSIVQAASVGPVL----------SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENS 156 (548)
Q Consensus 87 ~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~----------~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~ 156 (548)
-.+.|++.++ +.| .++..|.+++-.+. .+..+++-..||.||--...--|++..+..
T Consensus 24 y~~~lp~~~~----~~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVI----DSG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHH----hcc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 3455666554 334 47888988885443 235678888999999877666677777654
Q ss_pred CCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCC--CCccCCCCcEEEeChHHHHhhcCh----
Q 045757 157 NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG--QGWPIGKPDVIVSTPAALLNNIDP---- 230 (548)
Q Consensus 157 ~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~Ilv~Tp~~l~~~l~~---- 230 (548)
..+.|.+..+..|..+..+.|+.+.... +.+..+..- .+...-+-.|+++||..|...-..
T Consensus 91 ---------r~r~vwvS~s~dL~~Da~RDl~DIG~~~----i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 91 ---------RKRAVWVSVSNDLKYDAERDLRDIGADN----IPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred ---------CCceEEEECChhhhhHHHHHHHHhCCCc----ccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCc
Confidence 5579999999999999999999887543 333322221 111123456999999998665321
Q ss_pred -hhhhcc-ccc-cC-eeEEEEecchhhccC
Q 045757 231 -KRRRRM-EFV-RG-VKYVVFDEADMLLCG 256 (548)
Q Consensus 231 -~~~~~~-~~~-~~-~~~vV~DEah~l~~~ 256 (548)
.+.... .++ .+ =.+|||||||..-+.
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 110100 111 12 248999999987443
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.23 E-value=3.7e-06 Score=84.53 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=68.2
Q ss_pred HHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 99 l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
+...++.++..-|..|+.++++..=.+|++|.|+|||.+..--+++.+ +. ....+|+++|+.--
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~~---------------~~~~VLvcApSNiA 466 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQ---------------HAGPVLVCAPSNIA 466 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-Hh---------------cCCceEEEcccchh
Confidence 334567778899999999999999999999999999998654444443 33 37899999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEeCC
Q 045757 179 CEQVVRMANALSADNGEPLVRAVAVCGG 206 (548)
Q Consensus 179 ~~q~~~~~~~~~~~~~~~~~~~~~~~g~ 206 (548)
+.|+.+.+.+.+ ++++-++..
T Consensus 467 VDqLaeKIh~tg-------LKVvRl~ak 487 (935)
T KOG1802|consen 467 VDQLAEKIHKTG-------LKVVRLCAK 487 (935)
T ss_pred HHHHHHHHHhcC-------ceEeeeehh
Confidence 999999888765 667666654
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.17 E-value=2.3e-05 Score=70.44 Aligned_cols=152 Identities=21% Similarity=0.327 Sum_probs=96.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccC---CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS---GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~---g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
.|+....++.++--+.. ++ -+++.|.+....+.+ |+|.+.++-+|.|||-+ ++|++..++.+
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------ 68 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------ 68 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------------
Confidence 46667677777654443 44 689999999977774 58999999999999988 78888887765
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc--------------CCCCcEEEeChHHHHhh
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP--------------IGKPDVIVSTPAALLNN 227 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------~~~~~Ilv~Tp~~l~~~ 227 (548)
+...+-+++|. +|..|..+.+.+-....-...+...-+.-..... ...-.|+++||+.++.+
T Consensus 69 ---g~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 69 ---GSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred ---CCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 24456666664 7999999988866543321112222222222211 23456999999987543
Q ss_pred c--------Chhh--hhcc----ccccCeeEEEEecchhhcc
Q 045757 228 I--------DPKR--RRRM----EFVRGVKYVVFDEADMLLC 255 (548)
Q Consensus 228 l--------~~~~--~~~~----~~~~~~~~vV~DEah~l~~ 255 (548)
. +.+. .... .++.+...=|+||+|.++.
T Consensus 145 ~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 145 KLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 2 1110 0000 1233455569999998764
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=6.3e-06 Score=74.18 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=43.7
Q ss_pred CCcHHHHhhhhcccCCC--cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGK--DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~--~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
++++-|.+++..++..+ -.++.++.|+|||.+ +-.+...+ .. .+.++++++||...+....
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~-~~---------------~g~~v~~~apT~~Aa~~L~ 63 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEAL-EA---------------AGKRVIGLAPTNKAAKELR 63 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHH-HH---------------TT--EEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHH-Hh---------------CCCeEEEECCcHHHHHHHH
Confidence 46888999999997543 467889999999975 33344444 33 2679999999988887765
Q ss_pred HH
Q 045757 184 RM 185 (548)
Q Consensus 184 ~~ 185 (548)
+.
T Consensus 64 ~~ 65 (196)
T PF13604_consen 64 EK 65 (196)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.01 E-value=8.6e-06 Score=81.57 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=51.2
Q ss_pred CCcHHHHhhhhcccCCC-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
.+.+-|++|+......+ -.++.||.|+|||.+.. -++.++... +.++||.+||..-+..+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv-EiI~qlvk~----------------~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV-EIISQLVKQ----------------KKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHH-HHHHHHHHc----------------CCeEEEEcCchHHHHHHHH
Confidence 45677999998888774 46788999999999854 455555554 6899999999999998888
Q ss_pred HHH
Q 045757 185 MAN 187 (548)
Q Consensus 185 ~~~ 187 (548)
.+.
T Consensus 248 rl~ 250 (649)
T KOG1803|consen 248 RLT 250 (649)
T ss_pred Hhc
Confidence 543
No 185
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.00053 Score=68.84 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=64.7
Q ss_pred EEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH-hhc--------ccCCC
Q 045757 126 IAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA-LSA--------DNGEP 196 (548)
Q Consensus 126 i~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~-~~~--------~~~~~ 196 (548)
..|.||||||++..-.|++.+-.+ -...|+.|.....++.....+.. +.. ..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg----------------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~ 65 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG----------------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDE 65 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc----------------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCc
Confidence 568999999999777777776543 45788888877776665432211 100 00011
Q ss_pred cEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhc--cccccCeeE-EEEecchhh
Q 045757 197 LVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRR--MEFVRGVKY-VVFDEADML 253 (548)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~--~~~~~~~~~-vV~DEah~l 253 (548)
.+.+--+..-.. -..+..|+++|.+.|...+...++.. ...+.+.++ .+-||||++
T Consensus 66 ~i~ikkvn~fse-hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 66 NIEIKKVNNFSE-HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred eeeeeeecccCc-cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 122222211111 24567899999999977765443322 122444554 456999997
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.93 E-value=3.4e-05 Score=76.54 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=67.0
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEE
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA 202 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 202 (548)
-++|.|..|||||+.++ -++..+... ..+..+++++++.+|...+.+.+.....
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~--------------~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNS--------------EEGKKVLYLCGNHPLRNKLREQLAKKYN----------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhcc--------------ccCCceEEEEecchHHHHHHHHHhhhcc-----------
Confidence 47899999999998743 344444111 2367899999999999988877765430
Q ss_pred EeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC-------hHHHHHHHHhh
Q 045757 203 VCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS-------FQNQVIRLINM 268 (548)
Q Consensus 203 ~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~-------~~~~~~~i~~~ 268 (548)
.......+..+..+..... ........+++|||||||++...+ ..+++..+++.
T Consensus 57 --------~~~~~~~~~~~~~~i~~~~----~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 --------PKLKKSDFRKPTSFINNYS----ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------cchhhhhhhhhHHHHhhcc----cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011233444444443332 001124678999999999997632 23556666544
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.80 E-value=0.00011 Score=76.94 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=28.8
Q ss_pred CCcHHHHhhhhcccC----CCcEEEEccCCCchhHHhH
Q 045757 106 RPSIVQAASVGPVLS----GKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~----g~~~ii~a~TGsGKTl~~~ 139 (548)
.|++.|...+..++. ..+.++..|||+|||++.+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 689999998877764 4789999999999998843
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.79 E-value=9.8e-05 Score=54.70 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=37.4
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
+.-++|.||.|||||.+..-.+...+... .. .+.++|+++|++..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~------------~~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAAR------------AD-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHh------------cC-CCCeEEEECCCHHHHHHHHHHH
Confidence 34455699999999977544444443211 11 2578999999999999988877
No 189
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.75 E-value=0.00023 Score=59.96 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCC------ceEEecCCCCHHHHHHHHHhhcc-C-CcEEEEeCcccccCCCCC--CCEEEEecCCCC---
Q 045757 437 VYAVTKILKTAGI------ECYCYHKDLSLEERAKTLVNFQE-K-GGVFVCTDAAARGIDIPN--VSHVIQADFATS--- 503 (548)
Q Consensus 437 ~~~l~~~L~~~~~------~~~~~~~~~~~~~r~~~~~~f~~-~-~~vLv~T~~~~~GiDip~--v~~VI~~~~p~s--- 503 (548)
.+.++..+.+.+. ....+..+.+..+..++++.|+. . ..||+++..+++|||+|+ ++.||..++|.-
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3444555544432 22334444555567889999983 3 379999988999999997 678998887621
Q ss_pred ----------------------------HHHHHHHhcccccCCCcceEEEEeec
Q 045757 504 ----------------------------AVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 504 ----------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
...+.|.+||+-|..++--+++++++
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 13357888999997665334545544
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.67 E-value=0.00052 Score=72.03 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=77.3
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
..+|+.|+..++.++-++|.|+.|||||.+. ..++..+.... ......++++.+||-.-+..+.+.+.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~-----------~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS-----------PKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc-----------cccCCCcEEEECCcHHHHHHHHHHHH
Confidence 3799999999999999999999999999873 33444443220 00012579999999888777776665
Q ss_pred HhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhh--ccccccCeeEEEEecchhhccCChHHHHHHH
Q 045757 188 ALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRR--RMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265 (548)
Q Consensus 188 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~--~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i 265 (548)
......+ .. ........+-..|-.+++......... ...+...+++||+||+-|+. ...+..+
T Consensus 215 ~~~~~l~---~~--------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~l 279 (586)
T TIGR01447 215 KAVKNLA---AA--------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKL 279 (586)
T ss_pred hhhcccc---cc--------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHH
Confidence 4332211 00 000001112245555554433211111 11123358999999999763 2234445
Q ss_pred Hhhhh
Q 045757 266 INMFR 270 (548)
Q Consensus 266 ~~~l~ 270 (548)
++.++
T Consensus 280 l~al~ 284 (586)
T TIGR01447 280 LKALP 284 (586)
T ss_pred HHhcC
Confidence 54443
No 191
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.57 E-value=0.00041 Score=58.52 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCC---ceEEecCCCCHHHHHHHHHhhccC----CcEEEEeCc--ccccCCCCC--CCEEEEecCCC---
Q 045757 437 VYAVTKILKTAGI---ECYCYHKDLSLEERAKTLVNFQEK----GGVFVCTDA--AARGIDIPN--VSHVIQADFAT--- 502 (548)
Q Consensus 437 ~~~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~----~~vLv~T~~--~~~GiDip~--v~~VI~~~~p~--- 502 (548)
.+.+++.+++.+. ....+..+.+..+..++++.|+.. ..||+++.. +++|||+|+ ++.||..+.|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455555555432 122222223333557788889732 269998877 999999997 68899988773
Q ss_pred -C---------------------------HHHHHHHhcccccCCCcceEEEEeec
Q 045757 503 -S---------------------------AVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 503 -s---------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
+ ...+.|.+||+-|..++--++++++.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 12357889999998765335555544
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.54 E-value=0.00037 Score=75.37 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=47.9
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.++ .+++.|++|+..+..++-+++.|+.|+|||.+. -.+++.+... .+...+++++||-.-+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--------------~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--------------GGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--------------CCCceEEEEeCchHHHHH
Confidence 454 799999999999998889999999999999753 2333333221 011568889999777765
Q ss_pred HH
Q 045757 182 VV 183 (548)
Q Consensus 182 ~~ 183 (548)
+.
T Consensus 384 L~ 385 (720)
T TIGR01448 384 LG 385 (720)
T ss_pred HH
Confidence 43
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.51 E-value=0.00094 Score=70.34 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=72.8
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
.++|+.|+...+.++-++|.|+.|+|||.+. ..++..+.+.. ..+...+++.+||-.-+..+.+.+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~------------~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA------------DGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc------------CCCCcEEEEECCcHHHHHHHHHHHH
Confidence 5899999999999999999999999999773 33344333210 0123578899999888888877665
Q ss_pred HhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhh--hhccccccCeeEEEEecchhh
Q 045757 188 ALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKR--RRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 188 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~~~~~vV~DEah~l 253 (548)
......+ + ... .......-..|-.+++....... .....+.-.+++||+||+-|+
T Consensus 221 ~~~~~~~---~-----~~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv 277 (615)
T PRK10875 221 KALRQLP---L-----TDE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV 277 (615)
T ss_pred hhhhccc---c-----chh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc
Confidence 5432221 0 000 00111112355555544332111 011122335789999999976
No 194
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.50 E-value=0.00087 Score=66.13 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=50.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC-------ceEEecCCCCHHHHHHHHHhhc-----cCCcEEE--EeCcccccCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI-------ECYCYHKDLSLEERAKTLVNFQ-----EKGGVFV--CTDAAARGID 488 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~-----~~~~vLv--~T~~~~~GiD 488 (548)
-+...+.|+.+.-..+.++..-...|+ +. .+-+.-+..|-.-.+..++ +...||. +-.-.++|||
T Consensus 529 vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL-~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgid 607 (755)
T KOG1131|consen 529 VPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKL-LFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGID 607 (755)
T ss_pred CCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCce-EEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcc
Confidence 345788899988877777765554432 22 2223333444455666665 2335664 4577789999
Q ss_pred CCCCC--EEEEecCCC
Q 045757 489 IPNVS--HVIQADFAT 502 (548)
Q Consensus 489 ip~v~--~VI~~~~p~ 502 (548)
+.+-- .||.++.|.
T Consensus 608 F~hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 608 FDHHYGREVIMEGIPY 623 (755)
T ss_pred cccccCceEEEEeccc
Confidence 97654 899999884
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.15 E-value=0.0011 Score=64.73 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=53.8
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
+++-|.+++.. ..++++|.|+.|||||.+.+-.++..+... ..+..++|++++|+..+.++...+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-------------~~~~~~Il~lTft~~aa~e~~~ri 65 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-------------GVPPERILVLTFTNAAAQEMRERI 65 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-------------SSTGGGEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-------------cCChHHheecccCHHHHHHHHHHH
Confidence 47789999988 678999999999999998666666555432 023457999999999999999988
Q ss_pred HHhhcc
Q 045757 187 NALSAD 192 (548)
Q Consensus 187 ~~~~~~ 192 (548)
...+..
T Consensus 66 ~~~l~~ 71 (315)
T PF00580_consen 66 RELLEE 71 (315)
T ss_dssp HHHHHH
T ss_pred HHhcCc
Confidence 887644
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.14 E-value=0.0027 Score=70.13 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=46.6
Q ss_pred CCCCCCcHHHHhhhhcccCCC-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.|+ .+++-|++++..++.++ -+++.++.|+|||++ +-.+..+++. .+..++.++||-.-+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~---------------~G~~V~~~ApTGkAA~ 404 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA---------------AGYEVRGAALSGIAAE 404 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------------cCCeEEEecCcHHHHH
Confidence 454 79999999999998865 478999999999975 3334444443 2678999999966554
Q ss_pred HH
Q 045757 181 QV 182 (548)
Q Consensus 181 q~ 182 (548)
.+
T Consensus 405 ~L 406 (988)
T PRK13889 405 NL 406 (988)
T ss_pred HH
Confidence 44
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.09 E-value=0.0019 Score=68.86 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
.+.+.|.+|+..++.. ..++|.||+|||||.+. ..++..+... +.++|+++||..-+.++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~----------------g~~VLv~a~sn~Avd~l~e 219 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR----------------GLRVLVTAPSNIAVDNLLE 219 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----------------CCCEEEEcCcHHHHHHHHH
Confidence 4688999999988876 67889999999999774 3444444433 5689999999999999988
Q ss_pred HHHHh
Q 045757 185 MANAL 189 (548)
Q Consensus 185 ~~~~~ 189 (548)
.+...
T Consensus 220 ~l~~~ 224 (637)
T TIGR00376 220 RLALC 224 (637)
T ss_pred HHHhC
Confidence 87664
No 198
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.09 E-value=0.0043 Score=67.51 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.+++-|++|+..++.+ +-+++.|+.|+|||.. +-.+..++.. .+..+++++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~---------------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA---------------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh---------------CCCeEEEEeCcHHHHHHH
Confidence 6899999999998874 6678999999999975 2333333333 257899999996655544
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.05 E-value=0.00052 Score=61.33 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=42.1
Q ss_pred CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 104 ~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
+...++.|..++.+++..+-+++.||.|||||+.++..+++.+.+. .-.+++++-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---------------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---------------EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---------------S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---------------CCcEEEEEecCCCC
Confidence 4456889999999999888899999999999999888888887653 34578888888654
No 200
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.86 E-value=5.5e-05 Score=78.79 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=56.8
Q ss_pred cCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc--c--CCcEEEEeCccccc
Q 045757 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ--E--KGGVFVCTDAAARG 486 (548)
Q Consensus 421 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~--~~~vLv~T~~~~~G 486 (548)
...+.|++||.+-++..+.+..++...+ ....++|..+..+|+..+..|. + ..-.|.||.+.+.|
T Consensus 628 ~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 628 KSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3578999999999999999999999888 8889999999999999999998 2 23688999887665
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.82 E-value=0.0087 Score=66.74 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhhhcccC-CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 045757 90 GLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP 168 (548)
Q Consensus 90 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
++++..+......++ .+++-|.+++..+.. ++-+++.|+.|+|||.+ +-.+..+++. .+..
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~---------------~G~~ 427 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA---------------AGYR 427 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH---------------cCCe
Confidence 344555544434343 799999999998764 45678999999999975 3333344433 3678
Q ss_pred EEEEcCcHHHHHHH
Q 045757 169 SLVLCPNVVLCEQV 182 (548)
Q Consensus 169 ~Lil~Pt~~L~~q~ 182 (548)
++.++||-.-+..+
T Consensus 428 V~g~ApTgkAA~~L 441 (1102)
T PRK13826 428 VVGGALAGKAAEGL 441 (1102)
T ss_pred EEEEcCcHHHHHHH
Confidence 99999996555444
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.80 E-value=0.0024 Score=53.31 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=13.0
Q ss_pred CCcEEEEccCCCchhHHhH
Q 045757 121 GKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~ 139 (548)
++.+++.|++|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4678999999999997643
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.79 E-value=0.015 Score=55.50 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=52.4
Q ss_pred HCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
..|+....-.|.-|+..++.. +=+.+.++.|||||+-++-+.+++.++. ..-.+++|.=|+..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~--------------~~y~KiiVtRp~vpv 288 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER--------------KRYRKIIVTRPTVPV 288 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH--------------hhhceEEEecCCcCc
Confidence 457766777899999999876 3466789999999999888888888766 234578888888776
Q ss_pred HHHH
Q 045757 179 CEQV 182 (548)
Q Consensus 179 ~~q~ 182 (548)
.+++
T Consensus 289 G~dI 292 (436)
T COG1875 289 GEDI 292 (436)
T ss_pred cccc
Confidence 6554
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.75 E-value=0.0045 Score=65.93 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=78.9
Q ss_pred CCcHHHHhhhhcccCCCc-EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKD-VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~-~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
.+..-|++|+..++..+| .+|.|=.|||||.+.. .++..+... +.++|+.+-|-.-+..+.-
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~----------------gkkVLLtsyThsAVDNILi 731 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVAL----------------GKKVLLTSYTHSAVDNILI 731 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHHc----------------CCeEEEEehhhHHHHHHHH
Confidence 578889999988876654 6788999999998743 334444333 6789999999888888777
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCc-----------------------cCCCCcEEEeChHHHHhhcChhhhhccccccC
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGW-----------------------PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRG 241 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~-----------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~ 241 (548)
.++.+. +.+.-+..+... ..+.+.||.||--.+.+.+.. .+.
T Consensus 732 KL~~~~-------i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~--------~R~ 796 (1100)
T KOG1805|consen 732 KLKGFG-------IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV--------NRQ 796 (1100)
T ss_pred HHhccC-------cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh--------ccc
Confidence 666653 222211111110 135688999987666554432 346
Q ss_pred eeEEEEecchhhc
Q 045757 242 VKYVVFDEADMLL 254 (548)
Q Consensus 242 ~~~vV~DEah~l~ 254 (548)
++++|+|||-.++
T Consensus 797 FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 797 FDYCIIDEASQIL 809 (1100)
T ss_pred cCEEEEccccccc
Confidence 8999999998764
No 205
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.74 E-value=0.0033 Score=68.73 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=66.1
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCC----CCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCC
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS----DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGE 195 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~----~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~ 195 (548)
.|++++++...|.|||.+-+...+...-. .....++ ........+.+|||||. ++..||..++.......
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k---~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-- 446 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPK---LCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-- 446 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccc---cchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--
Confidence 35678999999999998854443332111 0000111 01122245679999998 78889999998887553
Q ss_pred CcEEEEEEeCCCCc------cCCCCcEEEeChHHHHhhc
Q 045757 196 PLVRAVAVCGGQGW------PIGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 196 ~~~~~~~~~g~~~~------~~~~~~Ilv~Tp~~l~~~l 228 (548)
+++..+.|-.+. ..-.+|||++||..|..-+
T Consensus 447 --lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El 483 (1394)
T KOG0298|consen 447 --LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNEL 483 (1394)
T ss_pred --ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHh
Confidence 677777775332 2457999999999996555
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.57 E-value=0.016 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=19.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.+.++++.|++|+|||... ..++..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3578999999999999763 34455554
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.54 E-value=0.0049 Score=61.37 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=42.0
Q ss_pred CcHHHHhhhhcc------cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 107 PSIVQAASVGPV------LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 107 ~~~~Q~~~i~~i------~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
+.+-|++++..+ .++.++++.|+-|+|||+.+ -.+...+.. .+..+++++||-.-|.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~---------------~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS---------------RGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc---------------ccceEEEecchHHHHH
Confidence 567788888777 67889999999999999753 333333222 3567999999865554
Q ss_pred HH
Q 045757 181 QV 182 (548)
Q Consensus 181 q~ 182 (548)
.+
T Consensus 65 ~i 66 (364)
T PF05970_consen 65 NI 66 (364)
T ss_pred hc
Confidence 44
No 208
>PRK08181 transposase; Validated
Probab=96.52 E-value=0.0074 Score=56.86 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=20.4
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
-.++++++.||+|+|||..+. .+...+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~-Aia~~a~ 131 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA-AIGLALI 131 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH-HHHHHHH
Confidence 467899999999999997643 3344443
No 209
>PRK08727 hypothetical protein; Validated
Probab=96.45 E-value=0.024 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=17.4
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..+++.|++|+|||.... .+...+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 459999999999997533 3344443
No 210
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.43 E-value=0.014 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEK 145 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~ 145 (548)
.-+.++.||.|+|||-++.+..-+.
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHh
Confidence 3578999999999998866544443
No 211
>PRK06526 transposase; Provisional
Probab=96.40 E-value=0.0062 Score=57.01 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=19.2
Q ss_pred cccCCCcEEEEccCCCchhHHhHH
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~l 140 (548)
.+..+.++++.||+|+|||..+.-
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 344678999999999999987543
No 212
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.37 E-value=0.015 Score=63.65 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=73.7
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+++-|++++... ...++|.|..|||||.+..--+...+.+. ..+...+|+|+-|+..+.++.+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-------------~v~p~~IL~lTFTnkAA~em~~ 67 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVE-------------NASPHSIMAVTFTNKAAAEMRH 67 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------CCCHHHeEeeeccHHHHHHHHH
Confidence 46899999999763 46899999999999998555554444221 1134589999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
.+.++.... ...+.|+|...+...+-....... .+. -.+-|+|+.+.
T Consensus 68 Rl~~~~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~-g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 68 RIGALLGTS-------------------ARGMWIGTFHGLAHRLLRAHHLDA-GLP-QDFQILDSDDQ 114 (715)
T ss_pred HHHHHhccc-------------------ccCcEEEcHHHHHHHHHHHHHHHh-CCC-CCCeecCHHHH
Confidence 888875211 125788999887543322211111 111 12457788764
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.33 E-value=0.036 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTA 149 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~ 149 (548)
.-+++.|++|+|||.- +..+...+.+.
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~ 61 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ 61 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 3589999999999984 44555555443
No 214
>PRK10536 hypothetical protein; Provisional
Probab=96.28 E-value=0.007 Score=55.83 Aligned_cols=47 Identities=23% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
.++...+..|...+.++.++..+++.|++|+|||+.+...+++.+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35666788899999999888889999999999999877666666543
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.27 E-value=0.0053 Score=54.96 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=24.1
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcC
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP 174 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~P 174 (548)
=.++.+|+|+|||... +-++.++... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~-l~~~~~~~~~----------------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTEL-LQRAYNYEER----------------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHHc----------------CCeEEEEec
Confidence 4678999999999664 4444444332 567888866
No 216
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.037 Score=57.85 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
+.+++.|++|+|||.. +-.+...+.
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~ 339 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYAR 339 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3489999999999975 234444443
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.0066 Score=56.91 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=36.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~ 188 (548)
+++++++.|++|+|||..+ .++...+. . .+.-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~-~----------------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELL-K----------------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHH-H----------------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 6789999999999999874 34555555 3 35566667777888777665543
No 218
>PRK06893 DNA replication initiation factor; Validated
Probab=96.24 E-value=0.026 Score=52.19 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=17.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..+++.||+|+|||... ..+...+.
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~ 64 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYL 64 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 45789999999999753 33444443
No 219
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.17 E-value=0.02 Score=62.65 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++-|++++... .+.++|.|+.|||||.+..--+...+.+. ..+...+|+|+-|+..+.++.+.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-------------~v~p~~IL~lTFT~kAA~Em~~R 73 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-------------NASPYSIMAVTFTNKAAAEMRHR 73 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-------------CCChhHeEeeeccHHHHHHHHHH
Confidence 5899999999754 46899999999999998655555444211 11346799999999999999998
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhh
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNN 227 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~ 227 (548)
+.++.... ...+.|+|...+...
T Consensus 74 l~~~~~~~-------------------~~~~~i~TfHs~~~~ 96 (721)
T PRK11773 74 IEQLLGTS-------------------QGGMWVGTFHGLAHR 96 (721)
T ss_pred HHHHhccC-------------------CCCCEEEcHHHHHHH
Confidence 88875211 124778999887543
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.15 E-value=0.029 Score=47.45 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.039 Score=51.24 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
..+++.|++|+|||.-
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5688999999999975
No 222
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.011 Score=55.03 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=38.8
Q ss_pred ceeecCCCcccccCCCHHHHHHHH-HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 77 TFFADDNVTWKSLGLSDRLIRALE-NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 77 ~~~~~~~~~~~~l~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
...+..+.+|++|++++-+.+.+. ..|. ++|.+|||||||.+ +..++..+.+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 445677888999999998887443 2243 88999999999987 5567776644
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.05 E-value=0.031 Score=54.39 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
.++++++.|+||+|||+. +..++..++.
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~ 209 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD 209 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 358999999999999985 3355555554
No 224
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.01 E-value=0.016 Score=62.57 Aligned_cols=70 Identities=14% Similarity=0.016 Sum_probs=53.7
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++-|++++... ...++|.|+.|||||.+..--+...+... ..+..++|+|+.|+..+.++.+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-------------~v~p~~IL~lTFT~kAA~em~~R 66 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-------------GYQARHIAAVTFTNKAAREMKER 66 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-------------CCCHHHeeeEechHHHHHHHHHH
Confidence 4788999999763 46789999999999998655555544321 01245799999999999999888
Q ss_pred HHHhh
Q 045757 186 ANALS 190 (548)
Q Consensus 186 ~~~~~ 190 (548)
+.++.
T Consensus 67 l~~~l 71 (672)
T PRK10919 67 VAQTL 71 (672)
T ss_pred HHHHh
Confidence 87765
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.96 E-value=0.039 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=18.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
..+++.+++|+|||..+. .++..+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 478999999999997643 44555543
No 226
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.93 E-value=0.027 Score=53.17 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=55.1
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
.+++++|+||-|||. +++++...--. . .+.+ ...-+.+++-+|...-....+..+-... +.| .+.
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~-~-~d~~---~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP-~~~- 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPP-Q-SDED---AERIPVVYVQMPPEPDERRFYSAILEAL---GAP-YRP- 126 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCC-C-CCCC---CccccEEEEecCCCCChHHHHHHHHHHh---Ccc-cCC-
Confidence 589999999999995 55666654211 1 1111 1123456666787766666665443322 111 000
Q ss_pred EEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 202 ~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
. .+...+..... .....-+++++||||+|.++.++...
T Consensus 127 ----~------------~~~~~~~~~~~-----~llr~~~vrmLIIDE~H~lLaGs~~~ 164 (302)
T PF05621_consen 127 ----R------------DRVAKLEQQVL-----RLLRRLGVRMLIIDEFHNLLAGSYRK 164 (302)
T ss_pred ----C------------CCHHHHHHHHH-----HHHHHcCCcEEEeechHHHhcccHHH
Confidence 0 01122211110 01113368999999999998776554
No 227
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.046 Score=53.90 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=18.4
Q ss_pred CCCcEEEEccCCCchhHHhHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLI 143 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il 143 (548)
.|+.+++.+|||+|||.+..-.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999988544333
No 228
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.89 E-value=0.0057 Score=53.23 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=42.7
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEE-E
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVA-V 203 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~-~ 203 (548)
++.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-++...+.+..-+...+ .+... .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~---~~~~~~~ 61 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------GKIRILVTAPSPENVQTLFEFAEKGLKALG---YKEEKKK 61 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------EEEE-SS--S-HHHHHCC------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------cCceEEEecCCHHHHHHHHHHHHhhccccc---ccccccc
Confidence 578999999997755544333221 135799999999998888877665544333 11100 0
Q ss_pred eC--CCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 204 CG--GQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 204 ~g--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
.. ......++..|-+..|+.+... -...+++|+|||=.+
T Consensus 62 ~~~~~~~~~~~~~~i~f~~Pd~l~~~-----------~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 62 RIGQIIKLRFNKQRIEFVAPDELLAE-----------KPQADLLIVDEAAAI 102 (177)
T ss_dssp -----------CCC--B--HHHHCCT---------------SCEEECTGGGS
T ss_pred ccccccccccccceEEEECCHHHHhC-----------cCCCCEEEEechhcC
Confidence 00 0011123566777788776322 123589999999875
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.097 Score=52.09 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
+.+++.||||+|||.+..
T Consensus 175 ~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIA 192 (388)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568899999999998854
No 230
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.74 E-value=0.046 Score=58.85 Aligned_cols=74 Identities=18% Similarity=0.051 Sum_probs=53.7
Q ss_pred CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 102 SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 102 ~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
..-..+++-|++|+-.- ..+++|.|..|||||.+..--+...+... ......+|+++.|+..+..
T Consensus 192 ~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~-------------~~~~~~IL~ltft~~AA~e 256 (684)
T PRK11054 192 VESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARG-------------QAQPEQILLLAFGRQAAEE 256 (684)
T ss_pred ccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-------------CCCHHHeEEEeccHHHHHH
Confidence 33357999999999643 35789999999999988544443333221 0124589999999999999
Q ss_pred HHHHHHHhh
Q 045757 182 VVRMANALS 190 (548)
Q Consensus 182 ~~~~~~~~~ 190 (548)
+.+.+....
T Consensus 257 m~eRL~~~l 265 (684)
T PRK11054 257 MDERIRERL 265 (684)
T ss_pred HHHHHHHhc
Confidence 988887654
No 231
>PRK12377 putative replication protein; Provisional
Probab=95.67 E-value=0.049 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
..++++.|++|+|||..+ ..+...+..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 368999999999999763 345555543
No 232
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.64 E-value=0.4 Score=58.07 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
.+++-|++++..++.. +-.++.++.|+|||.+ +-.+..+.+. .+..+++++||-.-+..+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~---------------~G~~V~~lAPTgrAA~~L~ 491 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE---------------QGYEIQIITAGSLSAQELR 491 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh---------------cCCeEEEEeCCHHHHHHHH
Confidence 5889999999988865 5678999999999975 3333344443 3678999999977666554
Q ss_pred H
Q 045757 184 R 184 (548)
Q Consensus 184 ~ 184 (548)
+
T Consensus 492 e 492 (1960)
T TIGR02760 492 Q 492 (1960)
T ss_pred H
Confidence 4
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.62 E-value=0.016 Score=48.63 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
+..+++.||+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 56789999999999975
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.59 E-value=0.068 Score=54.70 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
+.+++.|++|+|||... -.+...+... .++.+++++.. .++..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--------------~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--------------FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--------------CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 46899999999999652 3444444332 12455665544 566666555443
No 235
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.59 E-value=0.035 Score=60.41 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=53.1
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
+++-|++++... ..+++|.|+.|||||.+..--+...+.+. ..+...+|+|+.|+..+.++.+.+
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-------------~~~p~~IL~vTFt~~Aa~em~~Rl 66 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNC-------------GYKARNIAAVTFTNKAAREMKERV 66 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-------------CCCHHHeEEEeccHHHHHHHHHHH
Confidence 678899998753 56899999999999998655555544221 012467999999999999999888
Q ss_pred HHhhc
Q 045757 187 NALSA 191 (548)
Q Consensus 187 ~~~~~ 191 (548)
.+...
T Consensus 67 ~~~l~ 71 (664)
T TIGR01074 67 AKTLG 71 (664)
T ss_pred HHHhC
Confidence 77653
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.56 E-value=0.053 Score=56.25 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=51.9
Q ss_pred HHHHhhhhccc-----CC----CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 109 IVQAASVGPVL-----SG----KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 109 ~~Q~~~i~~i~-----~g----~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
|||+-.+..++ .| +.+++..|=|.|||......++-.+.-. ...+..+++.+++++-+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-------------g~~~~~i~~~A~~~~QA 67 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-------------GEPGAEIYCAANTRDQA 67 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-------------CccCceEEEEeCCHHHH
Confidence 67877776655 22 3688999999999976554444333211 12467899999999999
Q ss_pred HHHHHHHHHhhccc
Q 045757 180 EQVVRMANALSADN 193 (548)
Q Consensus 180 ~q~~~~~~~~~~~~ 193 (548)
..+++.+.++....
T Consensus 68 ~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 68 KIVFDEAKKMIEAS 81 (477)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887653
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.55 E-value=0.11 Score=48.37 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999753
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.47 E-value=0.11 Score=47.89 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.||+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999764
No 239
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.46 E-value=0.047 Score=63.26 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCcHHHHhhhhcccCC--CcEEEEccCCCchhHHh--HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSY--LVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~--~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.+++-|++|+..++.. +-++|.|..|+|||.+. ++-++..+.+. .+..++.++||-.-+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~---------------~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES---------------ERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc---------------cCceEEEEechHHHHHH
Confidence 6899999999999855 67889999999999763 22222222221 24678899999766655
Q ss_pred H
Q 045757 182 V 182 (548)
Q Consensus 182 ~ 182 (548)
+
T Consensus 900 L 900 (1623)
T PRK14712 900 M 900 (1623)
T ss_pred H
Confidence 5
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=95.43 E-value=0.14 Score=49.85 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.-+++.+++|+|||.+.
T Consensus 141 ~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTI 157 (336)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778999999999864
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.39 E-value=0.1 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
..+++.||+|+|||... -.+...+..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 46899999999999763 344444443
No 242
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.38 E-value=0.07 Score=50.01 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHHhhc-cCCcEEEEeCcccccCCCCC--------CCEEEEecCCCCHHHHHHHhcccccCCCc-ceEEEEeec
Q 045757 465 KTLVNFQ-EKGGVFVCTDAAARGIDIPN--------VSHVIQADFATSAVDFLHRVGRTARAGQY-GLVTSLYTE 529 (548)
Q Consensus 465 ~~~~~f~-~~~~vLv~T~~~~~GiDip~--------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-G~~i~~~~~ 529 (548)
...+.|. ++..|+|.+++.+.||.+.. -++-|.+.+|+|....+|..||+.|.|+. .-.+.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 4556888 66699999999999998852 45677889999999999999999999985 434444443
No 243
>PHA02533 17 large terminase protein; Provisional
Probab=95.37 E-value=0.15 Score=53.17 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=55.7
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.|.|+|...+..+..++-.++..+=..|||.+....++...+.. ++..+++++|+..-+..+.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---------------~~~~v~i~A~~~~QA~~vF~~ 123 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---------------KDKNVGILAHKASMAAEVLDR 123 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---------------CCCEEEEEeCCHHHHHHHHHH
Confidence 57899999998876566668889999999998765555444332 356899999999999998888
Q ss_pred HHHhhcc
Q 045757 186 ANALSAD 192 (548)
Q Consensus 186 ~~~~~~~ 192 (548)
++.+...
T Consensus 124 ik~~ie~ 130 (534)
T PHA02533 124 TKQAIEL 130 (534)
T ss_pred HHHHHHh
Confidence 8766543
No 244
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.36 E-value=0.037 Score=51.62 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=28.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
.+|.||||+||+- ++..++.. +...+....|++|+|.+..+
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~----------~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISC----------QLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhc----------CcccCCCCceEEECCCCCCC
Confidence 4688999999993 34444433 23344566899999987665
No 245
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.051 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
.|+++.|+||+|||.+ .--+++.+.+
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4799999999999977 3445555543
No 246
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.31 E-value=0.064 Score=54.72 Aligned_cols=91 Identities=29% Similarity=0.270 Sum_probs=58.8
Q ss_pred cCCCHH-HHHHHHHCCCCCC-------cHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 89 LGLSDR-LIRALENSGFGRP-------SIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 89 l~l~~~-l~~~l~~~~~~~~-------~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
.++.++ |...|++.--..+ .+-|-++|.. -.++-++|+|..|||||.+++-.+.-.+...
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~----------- 254 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGY----------- 254 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhcc-----------
Confidence 344444 4456665432233 3334444432 1356789999999999999888777666543
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSA 191 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~ 191 (548)
.....+..+||+.|++-+..-+.+.+-.++.
T Consensus 255 R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 255 RGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred ccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 1112244599999999999888888777753
No 247
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.30 E-value=0.11 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=18.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
+.+++.||+|+|||... -.+...+.
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHH
Confidence 46899999999999753 34444443
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.26 E-value=0.063 Score=46.43 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHhH
Q 045757 124 VVIAAETGSGKTHSYL 139 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~ 139 (548)
+++.|++|+|||....
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 6789999999997643
No 249
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.24 E-value=0.097 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=18.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
+.+++.||+|+|||... ..+...+.+
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~ 156 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQ 156 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHH
Confidence 46899999999999763 344455543
No 250
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.24 E-value=0.11 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=18.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
..+++.|++|+|||... ..+...+..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~ 162 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILE 162 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 45789999999999763 445555543
No 251
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.21 E-value=0.046 Score=53.31 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=30.1
Q ss_pred CCcHHHHhhhhcccCC----CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG----KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g----~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.++|||...+..+... +..++.||.|.|||..+.. +...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHc
Confidence 4589999999887754 3578999999999976543 334443
No 252
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.18 E-value=0.017 Score=60.19 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCcHHHHhhhhcccC--------C--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 106 RPSIVQAASVGPVLS--------G--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~--------g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
.++..|.+++-...+ | -..+|-...|-||--+..--|++.++.. +.++|.+.-+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG----------------RKrAlW~SVS 327 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG----------------RKRALWFSVS 327 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc----------------cceeEEEEec
Confidence 367789888855442 3 2456665566555443333466776654 6789999988
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC--Cc-----cCCCCcEEEeChHHHHhhcChhhhhccc-------ccc-
Q 045757 176 VVLCEQVVRMANALSADNGEPLVRAVAVCGGQ--GW-----PIGKPDVIVSTPAALLNNIDPKRRRRME-------FVR- 240 (548)
Q Consensus 176 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~--~~-----~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~-------~~~- 240 (548)
..|--+..+.+....... +.+.++..-. +. ..-+-.|+++||..|..--......... ++.
T Consensus 328 sDLKfDAERDL~DigA~~----I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge 403 (1300)
T KOG1513|consen 328 SDLKFDAERDLRDIGATG----IAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGE 403 (1300)
T ss_pred cccccchhhchhhcCCCC----ccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhh
Confidence 888888777777665332 5655543211 11 1123469999998885443211111000 111
Q ss_pred C-eeEEEEecchhh
Q 045757 241 G-VKYVVFDEADML 253 (548)
Q Consensus 241 ~-~~~vV~DEah~l 253 (548)
+ =.+|||||||..
T Consensus 404 ~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 404 DFEGVIVFDECHKA 417 (1300)
T ss_pred ccceeEEehhhhhh
Confidence 2 258999999975
No 253
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.14 E-value=0.075 Score=58.37 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+++-|.+++... .+.++|.|..|||||.+..--+...+.+. ......+|+++-|+.-+.++.+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~-------------~i~P~~IL~lTFT~kAA~em~~ 67 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEK-------------NVAPWNILAITFTNKAAREMKE 67 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CCCHHHeeeeeccHHHHHHHHH
Confidence 36899999999764 56899999999999998655555544221 0123579999999999999988
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhc
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l 228 (548)
.+.+++.. ...++.|+|...+...+
T Consensus 68 Rl~~~~~~-------------------~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 68 RVEKLLGP-------------------VAEDIWISTFHSMCVRI 92 (726)
T ss_pred HHHHHhcc-------------------ccCCcEEEcHHHHHHHH
Confidence 88776421 01357899998885443
No 254
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.13 E-value=0.5 Score=49.80 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhccc
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN 193 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~ 193 (548)
..+-.++.+|=|-|||.+..+.++..+ .. .+.+++|.+|...-++++.+.+...+...
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La-~f---------------~Gi~IlvTAH~~~ts~evF~rv~~~le~l 243 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMI-SF---------------LEIDIVVQAQRKTMCLTLYNRVETVVHAY 243 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHH-Hh---------------cCCeEEEECCChhhHHHHHHHHHHHHHHh
Confidence 346678899999999988655544333 21 25789999999999999988888777643
No 255
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.12 E-value=0.026 Score=52.19 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC-Cc-------cCCCCcEEEeChHHHHhhcChhhhh
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ-GW-------PIGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
..+.+.+|||+.+-.-|-++.+.++.+.... ..++-++... +. .....+|.||||+++..+++...
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k~----~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~-- 196 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGKD----CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA-- 196 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccCC----chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC--
Confidence 3456789999999888899988888874211 2222222221 11 13578999999999999996543
Q ss_pred ccccccCeeEEEEecchh
Q 045757 235 RMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 235 ~~~~~~~~~~vV~DEah~ 252 (548)
..++++.+||+|--|.
T Consensus 197 --L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 197 --LSLSNLKRIVLDWSYL 212 (252)
T ss_pred --CCcccCeEEEEcCCcc
Confidence 4478999999998663
No 256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.18 Score=49.18 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=29.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~ 188 (548)
.++|+.+|.|+|||..+-+.+- . -+....-+..+..=+.++.+.+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~-~-------------------~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG-T-------------------TNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH-h-------------------hCCceEEeccccccHHHHHHHHHH
Confidence 4799999999999976533221 1 134566666665555555544443
No 257
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.08 E-value=0.15 Score=42.20 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=12.3
Q ss_pred EEEEccCCCchhHH
Q 045757 124 VVIAAETGSGKTHS 137 (548)
Q Consensus 124 ~ii~a~TGsGKTl~ 137 (548)
+++.||.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999964
No 258
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.19 Score=49.87 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
..-+++.|++|+|||.-
T Consensus 113 ~nplfi~G~~GlGKTHL 129 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL 129 (408)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45689999999999975
No 259
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.94 E-value=0.035 Score=49.59 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=19.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.++++.+|.|+|||.+. +.+...++
T Consensus 49 P~liisGpPG~GKTTsi-~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSI-LCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHH-HHHHHHHh
Confidence 48999999999999884 44444444
No 260
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.93 E-value=0.077 Score=47.30 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
+++.|++|+|||...+-.+...+ . .+..++|+.. .+-..++.+.+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~----------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A----------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H----------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999976544444433 2 2567887754 45566666666655
No 261
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.89 E-value=0.1 Score=49.84 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCchhHHhHH
Q 045757 121 GKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l 140 (548)
++.+.+++|||+|||.+..-
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999987543
No 262
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.86 E-value=0.058 Score=52.32 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHCCCCCCcHHHHhhhhcc-cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 97 RALENSGFGRPSIVQAASVGPV-LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 97 ~~l~~~~~~~~~~~Q~~~i~~i-~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
..+...|. +++.|.+.+..+ ..+++++++|+||||||.. +-.++..+... ++..+++++=.+
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~--------------~~~~rivtIEd~ 187 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ--------------DPTERVFIIEDT 187 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc--------------CCCceEEEEcCC
Confidence 33445553 567788888654 4568999999999999944 44444443211 124567777776
Q ss_pred HHH
Q 045757 176 VVL 178 (548)
Q Consensus 176 ~~L 178 (548)
.||
T Consensus 188 ~El 190 (319)
T PRK13894 188 GEI 190 (319)
T ss_pred Ccc
Confidence 665
No 263
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.32 Score=47.19 Aligned_cols=56 Identities=29% Similarity=0.494 Sum_probs=34.7
Q ss_pred CCCcccccCCCHHHHHHHHHC--------------CCCCCcHHHHhhh--h----cccCC-----CcEEEEccCCCchhH
Q 045757 82 DNVTWKSLGLSDRLIRALENS--------------GFGRPSIVQAASV--G----PVLSG-----KDVVIAAETGSGKTH 136 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~--------------~~~~~~~~Q~~~i--~----~i~~g-----~~~ii~a~TGsGKTl 136 (548)
....|+.++....|.+.|+.- |....-.+=.+|+ | ...+| +.+++.+|.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 455788899998888888642 1111111122222 2 22344 689999999999996
Q ss_pred H
Q 045757 137 S 137 (548)
Q Consensus 137 ~ 137 (548)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 4
No 264
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.78 E-value=0.24 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHH
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
++|.|+||+|||.+. -.++..+.
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 369999999999884 33445443
No 265
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=0.054 Score=52.40 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCcHHHHhhhhccc----CC---CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVL----SG---KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~----~g---~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..++|||..++..+. +| +-.++.||.|+||+..+. .+...++
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHh
Confidence 568999999997765 33 258899999999997644 3444443
No 266
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.18 Score=51.76 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.5
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..+++||.|+|||.++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 57999999999999876443
No 267
>PRK08116 hypothetical protein; Validated
Probab=94.73 E-value=0.08 Score=50.15 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=19.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
..+++.|++|+|||..+. .++..+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 359999999999998643 45555544
No 268
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.63 E-value=0.28 Score=53.13 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
..|....+..+...+ ..++++||.++++..+..+.+.|++. +..+..+||+++..+|.+...... ++.+|+|+|.
T Consensus 173 SGKT~v~l~~i~~~l---~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 173 SGKTEVYLQAIAEVL---AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred ChHHHHHHHHHHHHH---HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 345555555554443 23678999999999999999999874 788999999999999988887777 6679999997
Q ss_pred cccccCCCCCCCEEEEec
Q 045757 482 AAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 482 ~~~~GiDip~v~~VI~~~ 499 (548)
.... +.+.++.+||.-+
T Consensus 250 sal~-~p~~~l~liVvDE 266 (679)
T PRK05580 250 SALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHhc-ccccCCCEEEEEC
Confidence 4432 5566788777544
No 269
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.61 E-value=0.042 Score=49.50 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||.|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 47999999999999654
No 270
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.55 E-value=0.12 Score=60.78 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=44.3
Q ss_pred CCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.+++.|++|+..++.+ +-++|.+..|+|||... -.++..+ ..+ ....+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~-~~l-----------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAV-NTL-----------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHH-HHh-----------hcccCceEEEECCcHHHHHHH
Confidence 6899999999999875 56889999999999762 2333332 110 001245788899997666554
No 271
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.27 Score=43.13 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=58.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+=.++.+|+.||||.. +|-.+..+... +.++++..|-..- ..+ ...+
T Consensus 5 ~l~~i~gpM~SGKT~e-Ll~r~~~~~~~----------------g~~v~vfkp~iD~-------------R~~---~~~V 51 (201)
T COG1435 5 WLEFIYGPMFSGKTEE-LLRRARRYKEA----------------GMKVLVFKPAIDT-------------RYG---VGKV 51 (201)
T ss_pred EEEEEEccCcCcchHH-HHHHHHHHHHc----------------CCeEEEEeccccc-------------ccc---ccee
Confidence 3468999999999985 44444444433 7789998885211 111 1111
Q ss_pred EEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhh
Q 045757 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINM 268 (548)
Q Consensus 202 ~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~ 268 (548)
...-|. ...-++|-.+..+.+.+..... ...+++|.+|||+-+ +.....++..+...
T Consensus 52 ~Sr~G~----~~~A~~i~~~~~i~~~i~~~~~-----~~~~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 52 SSRIGL----SSEAVVIPSDTDIFDEIAALHE-----KPPVDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred eeccCC----cccceecCChHHHHHHHHhccc-----CCCcCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 111111 1234666677777666643321 122789999999954 44444555555544
No 272
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.48 E-value=2 Score=43.23 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 104 ~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
+-.+-..|.++.-..-.|+. .|.+=.|||||...++-+.+.... ++..+++|.+=|+.|..++.
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k---------------nPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK---------------NPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC---------------CCCceEEEEeehHHHHHHHH
Confidence 44566677777766666655 778899999997654444443322 36789999999999999998
Q ss_pred HHHHHhhc
Q 045757 184 RMANALSA 191 (548)
Q Consensus 184 ~~~~~~~~ 191 (548)
+.+.+++-
T Consensus 224 ~lv~~F~f 231 (660)
T COG3972 224 TLVPEFFF 231 (660)
T ss_pred HHHHHHHH
Confidence 88777763
No 273
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.47 E-value=0.28 Score=51.10 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
.|....+..+...+ ..++++||.++++..+..+++.|++. +..+..+|++++..+|.+...... ++.+|+|+|..
T Consensus 9 GKT~v~l~~i~~~l---~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 9 GKTEVYLQAIEKVL---ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CHHHHHHHHHHHHH---HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 34444444444443 34678999999999999999999864 678999999999999988877776 66799999975
Q ss_pred ccccCCCCCCCEEEEec
Q 045757 483 AARGIDIPNVSHVIQAD 499 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~ 499 (548)
+-. ..+.++..||.-+
T Consensus 86 alf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHc-CcccCCCEEEEEC
Confidence 443 4567788877543
No 274
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.17 Score=50.96 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=34.2
Q ss_pred CceeecCCCcccccC---CCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 76 DTFFADDNVTWKSLG---LSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~---l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
...+-.+.-.|+++| |+.+..+.++.. ....|.-+-+-.++++ +.+++-+|.|+||||.
T Consensus 208 ~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 208 SNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGILLYGPPGTGKTLI 272 (744)
T ss_pred hccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEEEECCCCCChhHH
Confidence 444555666788885 666666555432 1112222222222222 6799999999999975
No 275
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.44 E-value=0.098 Score=46.16 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=28.7
Q ss_pred cccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.+-+++++++.|++|+|||..+. .+...++.. +..++++ +..+|+.++
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~~----------------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAV-AIANEAIRK----------------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHH-HHHHHHHHT----------------T--EEEE-EHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHH-HHHHHhccC----------------CcceeEe-ecCceeccc
Confidence 34467899999999999998744 444555443 4556554 455565554
No 276
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.39 E-value=0.29 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
.+++|.||+|+|||... -.++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999763 3334443
No 277
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.31 E-value=0.28 Score=53.28 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=63.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc-ccccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA-AARGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~-~~~GiDip~v~~VI 496 (548)
.+.+++|.++++..+...++.+++. ++.+..++|+++..+|.++++... ++..|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4678999999999999888776653 688999999999999999999998 66899999964 44567788888887
Q ss_pred E
Q 045757 497 Q 497 (548)
Q Consensus 497 ~ 497 (548)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 278
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.30 E-value=0.41 Score=51.21 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=74.8
Q ss_pred HHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 99 LENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 99 l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
+..........-|.+.+..++++ +-+++.|.-|=|||.+.-+.+. .+.+. .....++|.+|+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~--------------~~~~~iiVTAP~~ 271 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARL--------------AGSVRIIVTAPTP 271 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHh--------------cCCceEEEeCCCH
Confidence 34443334455555566666654 3678899999999988776663 22222 0135899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCcEEEEEEe-CCCCc-cCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 177 VLCEQVVRMANALSADNGEPLVRAVAVC-GGQGW-PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 177 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
+-++...+.+.+-....|.. -++..-. |.... ..+...|=+.+|.... ..-+++|+|||=.+
T Consensus 272 ~nv~~Lf~fa~~~l~~lg~~-~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~--------------~~~DllvVDEAAaI 335 (758)
T COG1444 272 ANVQTLFEFAGKGLEFLGYK-RKVAPDALGEIREVSGDGFRIEYVPPDDAQ--------------EEADLLVVDEAAAI 335 (758)
T ss_pred HHHHHHHHHHHHhHHHhCCc-cccccccccceeeecCCceeEEeeCcchhc--------------ccCCEEEEehhhcC
Confidence 99999888777666655522 1111111 11111 1233446666776542 11579999999865
No 279
>PRK04195 replication factor C large subunit; Provisional
Probab=94.29 E-value=0.41 Score=49.75 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999653
No 280
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.19 E-value=0.11 Score=50.28 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=39.1
Q ss_pred HHCCCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 100 ENSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 100 ~~~~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
...| .+++.|.+.+..+. .+++++|+|+||||||.. +-.++..+... ++..+++.+=.+.||
T Consensus 124 v~~g--~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--------------~~~~rivtiEd~~El 186 (323)
T PRK13833 124 VTSK--IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--------------APEDRLVILEDTAEI 186 (323)
T ss_pred HHcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--------------CCCceEEEecCCccc
Confidence 3445 36678887776554 568999999999999965 23344443211 123466666666665
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.19 E-value=0.25 Score=48.34 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=23.5
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEE-EEccCCCchhHH
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVV-IAAETGSGKTHS 137 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~i-i~a~TGsGKTl~ 137 (548)
.+|+++-..+.+...+... +..| .+++ +.||+|+|||..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHH
Confidence 3466666666665555432 1122 2444 589999999965
No 282
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.16 E-value=0.43 Score=51.20 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC--CceEEecCCCCHHHHHHHHHhhc-cCCcEEEEe
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG--IECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCT 480 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T 480 (548)
..|....++.+.+.+ ..++.+||.++.+..+..+.+.|++.. ..+..+|++++..+|.+...... |+.+|+|.|
T Consensus 171 SGKTevyl~~i~~~l---~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGt 247 (665)
T PRK14873 171 EDWARRLAAAAAATL---RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGT 247 (665)
T ss_pred CcHHHHHHHHHHHHH---HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 456777777776665 357889999999999999999998763 57999999999999999988887 667999999
Q ss_pred CcccccCCCCCCCEEEEec
Q 045757 481 DAAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 481 ~~~~~GiDip~v~~VI~~~ 499 (548)
..+.. .-++++..||..+
T Consensus 248 RSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 248 RSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred ceeEE-eccCCCCEEEEEc
Confidence 87654 4566788888654
No 283
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.16 E-value=0.13 Score=50.94 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..++.++|+++.+++.+.. .+..++|++|||||||.. +-.++..+.
T Consensus 129 ~~~l~~lgl~~~~~~~l~~------------------~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 129 IPDLKQMGIEPDLFNSLLP------------------AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCCHHHcCCCHHHHHHHHh------------------cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3457777777766544321 245689999999999976 334555543
No 284
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.10 E-value=0.18 Score=51.11 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=41.7
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH-HHHHHHHHHHHhhcccC
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV-LCEQVVRMANALSADNG 194 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~-L~~q~~~~~~~~~~~~~ 194 (548)
.++.++.|||||.+..+-++..++.. .++..++++-|+.. |-.-+...+.......+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~--------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g 61 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN--------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEG 61 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc--------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcC
Confidence 57889999999999888888777652 13578999999877 55556666666555444
No 285
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.10 E-value=0.14 Score=59.53 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=52.9
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMA 186 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~ 186 (548)
+|+-|.++|.. .+++++|.|..|||||.+..--++..+... ..-..+|+|+=|+.-+.++.+.+
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------~~~~~il~~tFt~~aa~e~~~ri 65 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG--------------VDIDRLLVVTFTNAAAREMKERI 65 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------CCHhhEEEEeccHHHHHHHHHHH
Confidence 58899999984 588999999999999998666666655322 11246999999999999988777
Q ss_pred HHhh
Q 045757 187 NALS 190 (548)
Q Consensus 187 ~~~~ 190 (548)
.+.+
T Consensus 66 ~~~l 69 (1232)
T TIGR02785 66 EEAL 69 (1232)
T ss_pred HHHH
Confidence 6554
No 286
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.87 E-value=0.36 Score=51.72 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.6
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
-+|++|+.|+|||.+..+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976543
No 287
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=0.82 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.0
Q ss_pred CcEEEEccCCCchhHHhHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLI 143 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il 143 (548)
+.+.+.||||+|||......+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5678999999999987544433
No 288
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.81 E-value=0.17 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred hcccCCCcEEEEccCCCchhHHhH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
+.+-++.|++..+|+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556678999999999999997765
No 289
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.81 E-value=0.34 Score=45.83 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.5
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997653
No 290
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.78 E-value=0.17 Score=48.76 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=39.8
Q ss_pred HHHHHCCCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 97 RALENSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 97 ~~l~~~~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
..+.+.| .+++-|.+.+..+. .+++++++|+||||||.. +-.++..+... ++..+++++=.+
T Consensus 109 ~~l~~~g--~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--------------~~~~ri~tiEd~ 171 (299)
T TIGR02782 109 DDYVEAG--IMTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--------------DPTDRVVIIEDT 171 (299)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--------------CCCceEEEECCc
Confidence 3344445 35566666665544 457999999999999965 33344443211 124567777777
Q ss_pred HHH
Q 045757 176 VVL 178 (548)
Q Consensus 176 ~~L 178 (548)
.|+
T Consensus 172 ~El 174 (299)
T TIGR02782 172 REL 174 (299)
T ss_pred hhh
Confidence 665
No 291
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.76 E-value=0.68 Score=42.75 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.|++|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999653
No 292
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=0.2 Score=55.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.6
Q ss_pred CcEEEEccCCCchhHHhHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~i 142 (548)
+-+|+.+|.|+|||.++.+.+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 347999999999998865543
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.68 E-value=0.49 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCchhHHhHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l 140 (548)
.|+.+.++||||+|||....-
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467888999999999987543
No 294
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.66 E-value=0.045 Score=62.77 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=76.2
Q ss_pred CcEEEEeCChhHHHHHHHHHHHcCC-ceEEecCCCC-----------HHHHHHHHHhhc-cCCcEEEEeCcccccCCCCC
Q 045757 425 SRTMVFANTVDAVYAVTKILKTAGI-ECYCYHKDLS-----------LEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPN 491 (548)
Q Consensus 425 ~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~ 491 (548)
-..++|++.+..+....+.+.+.+. .+..+.|.+. ...+.+++..|. .+..+|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4689999999999999988887632 2222333322 123567888898 77899999999999999999
Q ss_pred CCEEEEecCCCCHHHHHHHhcccccCC
Q 045757 492 VSHVIQADFATSAVDFLHRVGRTARAG 518 (548)
Q Consensus 492 v~~VI~~~~p~s~~~~~Qr~GR~gR~g 518 (548)
++.|+.++.|.....|+|+.||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997754
No 295
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.61 E-value=0.3 Score=48.13 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=50.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc-HHHHHHHHHHHHHhhcccCCCcEE
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN-VVLCEQVVRMANALSADNGEPLVR 199 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt-~~L~~q~~~~~~~~~~~~~~~~~~ 199 (548)
++.+.+.||||-|||.+..=.+....+.. .....+||-.-| |-=+.. .++.++.-.+ +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--------------~~~kVaiITtDtYRIGA~E---QLk~Ya~im~---vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--------------KKKKVAIITTDTYRIGAVE---QLKTYADIMG---VP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--------------cCcceEEEEeccchhhHHH---HHHHHHHHhC---Cc
Confidence 67788999999999988433333222111 123455665554 222222 2334443334 22
Q ss_pred EEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 200 AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 200 ~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
-.++-+|.-|...+. .+.++++|.+|=+-+
T Consensus 263 ---------------~~vv~~~~el~~ai~--------~l~~~d~ILVDTaGr 292 (407)
T COG1419 263 ---------------LEVVYSPKELAEAIE--------ALRDCDVILVDTAGR 292 (407)
T ss_pred ---------------eEEecCHHHHHHHHH--------HhhcCCEEEEeCCCC
Confidence 245567777755542 266789999998764
No 296
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.59 E-value=0.1 Score=51.51 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=30.2
Q ss_pred ecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+....+++++++++.+.+.+. ..+..++|+||||||||... -.++..+
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 334456777777665544332 13567999999999999763 3344444
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=93.59 E-value=0.16 Score=49.64 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
.++++.||.|+|||..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 298
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.52 E-value=0.46 Score=48.66 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=33.7
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
..|.-+++.+++|+|||...+..+ ..... .+.+++|+.- .+-..|+...+.++.
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a-~~~a~----------------~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVA-ARLAA----------------AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHH-HHHHh----------------cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 345678899999999997543333 33322 2567888874 345566665555543
No 299
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.51 E-value=0.24 Score=59.94 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhH--HHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 105 GRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYL--VPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~--l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
..+++.|++|+..++.+ +-++|.+..|+|||.... +-.+..+.+. .+..++.++||-.-+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------------~g~~v~glApT~~Aa~ 1082 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------------EQLQVIGLAPTHEAVG 1082 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------------cCCeEEEEeChHHHHH
Confidence 37899999999998865 456788999999997641 1222233332 2567899999966665
Q ss_pred HH
Q 045757 181 QV 182 (548)
Q Consensus 181 q~ 182 (548)
++
T Consensus 1083 ~L 1084 (1960)
T TIGR02760 1083 EL 1084 (1960)
T ss_pred HH
Confidence 55
No 300
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=1.3 Score=45.88 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=36.7
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
+.+..=+.++|+++|--+.+...|... -++.|--++.-.+.. -..+++++|.|+||||.
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 455556788999998656555544321 333333333322222 45799999999999964
No 301
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.14 Score=51.97 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+.+++.||.|+|||.++-+
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999987543
No 302
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.34 E-value=0.37 Score=48.93 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchhHHhHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~ 141 (548)
++.+++.+|||+|||.+..-.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 567889999999999875433
No 303
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.24 E-value=0.15 Score=56.40 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=79.1
Q ss_pred hccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCCEEEEe
Q 045757 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 419 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
+......++|||..-......+...+.-.++......++ +.-...+..|++=...++-+...+-|+|+-++.||+..
T Consensus 1216 K~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1216 KFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred hccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhcccceEEEEEeccCcccccHHhhhhhhee
Confidence 334556789999998887777777777666665544433 44556777777644677888999999999999999999
Q ss_pred cCCCCHHHHHHHhcccccCCCc
Q 045757 499 DFATSAVDFLHRVGRTARAGQY 520 (548)
Q Consensus 499 ~~p~s~~~~~Qr~GR~gR~g~~ 520 (548)
++-.++.+-.|.+||+.|.|++
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccc
Confidence 9999999999999999999986
No 304
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.22 Score=51.74 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..++.||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3479999999999977544
No 305
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.21 E-value=0.51 Score=46.05 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=26.0
Q ss_pred CcHHHHhhhhcccC--C---CcEEEEccCCCchhHHhHH
Q 045757 107 PSIVQAASVGPVLS--G---KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~--g---~~~ii~a~TGsGKTl~~~l 140 (548)
.+|||...+..+.. + +..++.||.|.|||..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 47888888877663 2 3688999999999977543
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.41 Score=50.76 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.1
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
-.+++||.|+|||..+.+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999987654
No 307
>PTZ00293 thymidine kinase; Provisional
Probab=93.18 E-value=0.41 Score=43.08 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
|.=-++.||+++|||.- +|-.+...... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~a----------------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYS----------------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHc----------------CCceEEEEec
Confidence 33457899999999964 45555555443 6788999885
No 308
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.17 E-value=0.47 Score=50.50 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+.+++.||.|+|||..+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999987544
No 309
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.17 E-value=0.53 Score=50.77 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc-ccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA-RGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~-~GiDip~v~~VI 496 (548)
.+.+++|.++++.-++..++.+++. ++.+..++|+++..+|..+++... ++..|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4679999999999999888777653 789999999999999999999988 6779999995444 467778888887
Q ss_pred Ee
Q 045757 497 QA 498 (548)
Q Consensus 497 ~~ 498 (548)
.-
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 43
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.08 E-value=0.67 Score=46.08 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
..|.-+++.+++|+|||...+. ++..+... +.+++|+.-- +-..|+.....++
T Consensus 80 ~~GslvLI~G~pG~GKStLllq-~a~~~a~~----------------g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQ-VAARLAKR----------------GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHH-HHHHHHhc----------------CCeEEEEECC-cCHHHHHHHHHHc
Confidence 3456788999999999975433 33333222 4678888653 3345655544444
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.00 E-value=0.12 Score=49.39 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=42.8
Q ss_pred CCCCCcHHHHhhhhcccCCC-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.+..+++-|...+..+..++ |+++++.||||||.. |-++.... ++..+++.+=-|-||.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i----------------~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI----------------DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC----------------CCcccEEEEeehhhhccC
Confidence 34578999999998887765 999999999999964 22222221 123478888777666433
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.90 E-value=0.3 Score=49.65 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999754
No 313
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.90 E-value=0.086 Score=53.11 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=39.0
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
++++.|+||||||.++++|.+... ...++|+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988876532 467999999999998877766654
No 314
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.88 E-value=0.46 Score=51.58 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999764
No 315
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.88 E-value=0.065 Score=56.35 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
..+|+|.+.+..+... +.+.+..++-+|||.+.+..+...+ .. ....+|++.||..++++..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~~---------------~P~~~l~v~Pt~~~a~~~~ 79 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-DQ---------------DPGPMLYVQPTDDAAKDFS 79 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-Ee---------------CCCCEEEEEEcHHHHHHHH
Confidence 5689999999888765 6899999999999985433332222 21 2578999999999999986
Q ss_pred -HHHHHhhcc
Q 045757 184 -RMANALSAD 192 (548)
Q Consensus 184 -~~~~~~~~~ 192 (548)
..+..+...
T Consensus 80 ~~rl~Pmi~~ 89 (557)
T PF05876_consen 80 KERLDPMIRA 89 (557)
T ss_pred HHHHHHHHHh
Confidence 455555543
No 316
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.81 E-value=1.8 Score=45.68 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=65.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+-.++..|-=.|||.... +++..++.. ..+..+++.+|.+.-++.+++++...+.....+ -.+.
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s--------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~-~~v~ 318 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT--------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGA-SRVD 318 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh--------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcch-hhee
Confidence 356899999999998754 666555433 247899999999999999999888876532111 1122
Q ss_pred EEeCCCCc--c-CCC--CcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhcc
Q 045757 202 AVCGGQGW--P-IGK--PDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255 (548)
Q Consensus 202 ~~~g~~~~--~-~~~--~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~ 255 (548)
.+.| ... . .++ ..|.+.|- .......-+.++++|+|||+.+-+
T Consensus 319 ~vkG-e~I~i~f~nG~kstI~FaSa----------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 319 HVKG-ETISFSFPDGSRSTIVFASS----------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred eecC-cEEEEEecCCCccEEEEEec----------cCCCCccCCcccEEEEechhhCCH
Confidence 2233 222 1 111 24444421 001111234789999999998754
No 317
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.79 E-value=0.33 Score=50.38 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=16.8
Q ss_pred cEEEEccCCCchhHHhHHHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
-.++.||.|+|||.++.. ++..+
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 359999999999987543 33333
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.25 Score=52.01 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.4
Q ss_pred cEEEEccCCCchhHHhHHH
Q 045757 123 DVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~ 141 (548)
-.+++||.|+|||.++.+.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARIL 55 (584)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999876543
No 319
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=0.26 Score=51.93 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+.++++||.|+|||..+.+
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4569999999999977543
No 320
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.71 E-value=0.32 Score=42.75 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=24.5
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
.++.||++||||.- ++-.+.++... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~----------------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA----------------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT----------------T-EEEEEEES
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC----------------CCeEEEEEec
Confidence 47889999999975 45555555433 6678888885
No 321
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=0.3 Score=47.45 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=27.9
Q ss_pred CcHHHHhhhhccc----CC---CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 107 PSIVQAASVGPVL----SG---KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 107 ~~~~Q~~~i~~i~----~g---~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.+|||...+..+. +| +-.++.||.|.||+..+.. +...++
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHc
Confidence 4788888886655 33 4678999999999977543 334443
No 322
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.50 E-value=0.33 Score=50.26 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+.++++||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999987544
No 323
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.45 E-value=0.098 Score=46.08 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhcc
Q 045757 211 IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255 (548)
Q Consensus 211 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~ 255 (548)
...+||||+++..|.+-....... ....+-.+|||||||.+.+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~--~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLF--GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHC--T--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhc--cccccCcEEEEecccchHH
Confidence 346899999999887654322211 1123457999999998854
No 324
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.54 Score=49.65 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..+++||.|+|||.++-+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999876443
No 325
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.37 E-value=0.13 Score=47.04 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
=+|++++|||||+.+
T Consensus 129 LviiVGaTGSGKSTt 143 (375)
T COG5008 129 LVIIVGATGSGKSTT 143 (375)
T ss_pred eEEEECCCCCCchhh
Confidence 388999999999976
No 326
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.36 E-value=0.76 Score=51.39 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC-cccccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD-AAARGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~-~~~~GiDip~v~~VI 496 (548)
.+.+++|.++|+..|...++.+++. ++.+..++|..+..++.++++.+. ++.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999999887764 677889999999999999999988 6789999995 444567888888887
Q ss_pred E
Q 045757 497 Q 497 (548)
Q Consensus 497 ~ 497 (548)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 327
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.30 E-value=0.36 Score=51.18 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.4
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
+.+++.||.|+|||..+.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999876443
No 328
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.26 E-value=0.18 Score=52.31 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=40.4
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.++++.||||||||..+++|.+-.. ..-++|.=|--+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------------------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------------------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------------------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999999876332 3478999999999888777666654
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.23 E-value=0.43 Score=46.72 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=28.2
Q ss_pred CcHHHHhhhhcccC--C---CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 107 PSIVQAASVGPVLS--G---KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~--g---~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
++|||...+..+.. + +..++.||.|.||+..+. .+...+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~-~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ-HLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH-HHHHHHc
Confidence 47888888876653 3 467899999999997754 3344443
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=92.20 E-value=0.39 Score=44.31 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=47.9
Q ss_pred cCCCHHHHHHHHHCCCCC----------CcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCC
Q 045757 89 LGLSDRLIRALENSGFGR----------PSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158 (548)
Q Consensus 89 l~l~~~l~~~l~~~~~~~----------~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~ 158 (548)
+.+++.+-+.-.+-||.. ++| ..+....+..|.-++|.|++|+|||.-.+-.+...+ ..
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~--------- 91 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KS--------- 91 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hc---------
Confidence 345555554445555544 344 223444555667889999999999976554444443 22
Q ss_pred CCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 159 ~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
+.+++|+.- -+-..|+.+.+.++
T Consensus 92 -------Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 92 -------GRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred -------CCeEEEEEE-eCCHHHHHHHHHHc
Confidence 456777753 23345666666655
No 331
>PF13173 AAA_14: AAA domain
Probab=92.15 E-value=1 Score=37.21 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=19.5
Q ss_pred CeeEEEEecchhhccCChHHHHHHHHhhh
Q 045757 241 GVKYVVFDEADMLLCGSFQNQVIRLINMF 269 (548)
Q Consensus 241 ~~~~vV~DEah~l~~~~~~~~~~~i~~~l 269 (548)
+-.+|++||+|.+ .++...+..+...-
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc
Confidence 3468999999987 45667777776543
No 332
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.11 E-value=0.69 Score=49.74 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=77.5
Q ss_pred eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 399 IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
.-+..+.|.+..++.+.+.+ ..++.+||.++.+.....+.+.|+.. |.++..+|++++..+|.....+.+ |+.+|
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L---~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVL---AQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHH---HcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 44566778888888888876 56789999999999888888888754 789999999999999999988888 77899
Q ss_pred EEEeCcccccCCCCCCCEEEE
Q 045757 477 FVCTDAAARGIDIPNVSHVIQ 497 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~ 497 (548)
+|.|..+-. .-++++..||.
T Consensus 300 VIGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 300 VIGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred EEEechhhc-CchhhccEEEE
Confidence 999976543 44567777774
No 333
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.00 E-value=0.47 Score=50.44 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.9
Q ss_pred EEEEccCCCchhHHhHHH
Q 045757 124 VVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~ 141 (548)
.++.||.|+|||..+-+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875443
No 334
>PRK04328 hypothetical protein; Provisional
Probab=91.93 E-value=0.84 Score=42.80 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=34.2
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.|..+++.+++|+|||.-.+-.+.+.+. .+..++|+. +.+-..++.+.++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~-----------------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----------------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567889999999999765544544432 245677776 4455555666555553
No 335
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.92 E-value=0.36 Score=50.88 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+-++++|+.|+|||..+.+
T Consensus 39 HA~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999987544
No 336
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.33 Score=52.99 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.5
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
-.+++||.|+|||..+-+
T Consensus 40 AyLFtGPpGtGKTTLARi 57 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987543
No 337
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.84 E-value=0.96 Score=46.33 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=55.5
Q ss_pred CCCcHHHHhhhhcccC------C----CcEEEEccCCCchhHHhHHHHH-HHHHHHcCCCCCCCCCCCCCCCCCCEEEEc
Q 045757 105 GRPSIVQAASVGPVLS------G----KDVVIAAETGSGKTHSYLVPLI-EKLCTALGDSENSNSDKEPTPPRAPSLVLC 173 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~------g----~~~ii~a~TGsGKTl~~~l~il-~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~ 173 (548)
..+.|||.-++..+.. | +-.+|..|-+-|||......+. ..+... ..+..+.|++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------------~~~~~~~i~A 125 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------------RSGAGIYILA 125 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------------hcCCcEEEEe
Confidence 3678999999988771 2 3578999999999976543332 233222 2477899999
Q ss_pred CcHHHHHHHHHHHHHhhccc
Q 045757 174 PNVVLCEQVVRMANALSADN 193 (548)
Q Consensus 174 Pt~~L~~q~~~~~~~~~~~~ 193 (548)
|+.+-+.+....++......
T Consensus 126 ~s~~qa~~~F~~ar~mv~~~ 145 (546)
T COG4626 126 PSVEQAANSFNPARDMVKRD 145 (546)
T ss_pred ccHHHHHHhhHHHHHHHHhC
Confidence 99999999999888877554
No 338
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.80 E-value=0.54 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHhHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~i 142 (548)
|+-+.+.||||+|||.+....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3456799999999998754433
No 339
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.80 E-value=1.2 Score=44.00 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.4
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||+|+|||..+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999764
No 340
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.76 E-value=0.22 Score=52.63 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=42.1
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.++++.||||||||..+++|.+... +.-++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999988754 457999999999998888777765
No 341
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=1.4 Score=40.53 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=35.4
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccC-CCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-g~~~ii~a~TGsGKTl~~ 138 (548)
.+.+++++.|-..+-++.+.+. .+.|--+-.+....-.. -+.+++.+|.|+|||+|+
T Consensus 171 kpdvty~dvggckeqieklrev-ve~pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREV-VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCcccccccchHHHHHHHHHH-HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 3556778888777666666543 11233333333333222 378999999999999885
No 342
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.58 E-value=0.45 Score=51.88 Aligned_cols=91 Identities=16% Similarity=0.286 Sum_probs=65.6
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcC-----CceEE-ecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc-ccCCC-C--
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAG-----IECYC-YHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA-RGIDI-P-- 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~-~GiDi-p-- 490 (548)
..++++++.+||...+.++++.|++.. ..+.. ||+.|+.+++.+.+++|. |+.+|||+|..+- .-.|. .
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~ 202 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKL 202 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhccc
Confidence 357899999999999999999887653 33333 999999999999999999 7789999997664 22221 1
Q ss_pred CCCEEEEecC------CCCHHHHHHHhc
Q 045757 491 NVSHVIQADF------ATSAVDFLHRVG 512 (548)
Q Consensus 491 ~v~~VI~~~~------p~s~~~~~Qr~G 512 (548)
..++|+.-|. .+|....+...|
T Consensus 203 kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 203 KFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred CCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 3566665442 255555555555
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=0.48 Score=48.76 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
.+++.||.|+|||..+-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999977543
No 344
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.51 E-value=0.57 Score=47.17 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=31.0
Q ss_pred cCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+|++++--+...+.+.+. .+..+..++... +...+.+++.||+|+|||+.+
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHH
Confidence 3456788887544444444432 222222222111 122367999999999999753
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.49 E-value=0.41 Score=47.27 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
++.++++||||||||..
T Consensus 122 ~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT 138 (343)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56799999999999976
No 346
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.44 E-value=0.63 Score=51.26 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+..+|++++..+.+.+.+.+. .+..+..++.. .+...+.+++.||+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~---g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM---GIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEECCCCCCHHHHH
Confidence 456788888777776666543 12222212211 1222467999999999999653
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.42 E-value=0.67 Score=43.01 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=32.4
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.|.-+++.+++|+|||.-....+...+. .+.+++++.=- +-..++.+.+.++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-----------------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-----------------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3567889999999999765544444332 25567777643 3345555555554
No 348
>PRK10436 hypothetical protein; Provisional
Probab=91.21 E-value=0.24 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=18.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+.-++++||||||||.+. ..++..+
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhh
Confidence 356889999999999873 3445444
No 349
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.19 E-value=0.24 Score=47.06 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=20.0
Q ss_pred CcHHHHhhhhccc----CC-CcEEEEccCCCchhHH
Q 045757 107 PSIVQAASVGPVL----SG-KDVVIAAETGSGKTHS 137 (548)
Q Consensus 107 ~~~~Q~~~i~~i~----~g-~~~ii~a~TGsGKTl~ 137 (548)
+++.+.+++..+. .+ ..+++.||+|+|||..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4444455554332 23 3588999999999965
No 350
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.17 E-value=0.54 Score=46.18 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999764
No 351
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.16 E-value=0.23 Score=44.22 Aligned_cols=32 Identities=38% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCcHHHHhhhhccc-CCCcEEEEccCCCchhHH
Q 045757 106 RPSIVQAASVGPVL-SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~ 137 (548)
.+++-|.+.+.... .|..+++++|||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 46777888886655 568999999999999965
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.06 E-value=0.56 Score=49.79 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..++.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999987544
No 353
>PF12846 AAA_10: AAA-like domain
Probab=91.03 E-value=0.39 Score=46.42 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
+.+++|.|+||+|||.... .++..+... +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR----------------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc----------------CCCEEEEcCCchHHH
Confidence 3579999999999997755 555555554 678888877654444
No 354
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.18 Score=47.58 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=15.1
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
-|+++.+|||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 48999999999999764
No 355
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.98 E-value=0.29 Score=47.94 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.0
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..+++++|+|+||||||..
T Consensus 159 v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHcCCeEEEECCCCccHHHH
Confidence 34578999999999999964
No 356
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=0.99 Score=45.00 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHhH
Q 045757 123 DVVIAAETGSGKTHSYL 139 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~ 139 (548)
.+++.||.|+|||..+.
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46899999999997643
No 357
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.90 E-value=2.3 Score=46.88 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 82 DNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
...+|++++--+...+.+.++ .+..|..++... +..++.+++.||+|+|||+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 456788887555555554432 122222222211 23457899999999999964
No 358
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.75 E-value=1.4 Score=44.11 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=48.8
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH-H---HHHHHHhhcccCCCcEEE
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ-V---VRMANALSADNGEPLVRA 200 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q-~---~~~~~~~~~~~~~~~~~~ 200 (548)
++.++.|+|||....+.++..+... +....++++|+..-+.+ + ...+..+...... +..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~---------------~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 63 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR---------------PPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFE--IKF 63 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS---------------SS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS----E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC---------------CCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcC--ccc
Confidence 5789999999999887777777654 22244444466555544 2 2334444333111 111
Q ss_pred EEEeCCCCccCCCCcEEEeChHHH--HhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 201 VAVCGGQGWPIGKPDVIVSTPAAL--LNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 201 ~~~~g~~~~~~~~~~Ilv~Tp~~l--~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
.......-...++..|.+.+...- ...+ .-..++++++||+-.+.+..+.
T Consensus 64 ~~~~~~~~~~~nG~~i~~~~~~~~~~~~~~---------~G~~~~~i~iDE~~~~~~~~~~ 115 (384)
T PF03237_consen 64 NEWNDRKIILPNGSRIQFRGADSPDSGDNI---------RGFEYDLIIIDEAAKVPDDAFS 115 (384)
T ss_dssp EEE-SSEEEETTS-EEEEES-----SHHHH---------HTS--SEEEEESGGGSTTHHHH
T ss_pred ccCCCCcEEecCceEEEEeccccccccccc---------cccccceeeeeecccCchHHHH
Confidence 111111111134455666553321 0111 1245789999998866443333
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.67 E-value=0.24 Score=47.13 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHH
Q 045757 94 RLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEK 145 (548)
Q Consensus 94 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~ 145 (548)
++.++|...++.+..+---+.+..+..|.-+++.|++|+|||......+...
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445554444443333333344556667889999999999997544433333
No 360
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.59 E-value=0.28 Score=49.56 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=23.6
Q ss_pred cHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHH
Q 045757 108 SIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
.+.|.+.+..+++. .=+++.||||||||.+ +..++..+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 34444444444433 2367889999999987 45555555
No 361
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.43 E-value=0.48 Score=46.45 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=29.0
Q ss_pred CCcHHHHhhhhccc----CC---CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SG---KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g---~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.++|||...+..+. +| +-.++.||.|.||+..+.- +...++
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~Ll 49 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLM 49 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHc
Confidence 36788888887665 33 3678999999999977543 344443
No 362
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.41 E-value=1.4 Score=38.23 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
+..++.||.|+||+..+. ..+..++
T Consensus 20 ha~L~~G~~g~gk~~~a~-~~a~~ll 44 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLAL-AFARALL 44 (162)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHHC
T ss_pred eeEEEECCCCCCHHHHHH-HHHHHHc
Confidence 457999999999997644 3444443
No 363
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.40 E-value=0.56 Score=45.46 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=28.9
Q ss_pred CCcHHHHhhhhccc----CC---CcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SG---KDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g---~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.++|||...+..+. +| +-.++.||.|.||+..+. .+...++
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~-~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE-LFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHc
Confidence 46888888886665 33 368999999999996643 3444443
No 364
>PHA00729 NTP-binding motif containing protein
Probab=90.38 E-value=0.56 Score=42.69 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999653
No 365
>PRK13764 ATPase; Provisional
Probab=90.35 E-value=0.56 Score=49.40 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
..+++++++++.+++.+. ..++++++++|||||||.. +-.++..+
T Consensus 237 ~~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred CCCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 445667777765544333 2357899999999999975 34445444
No 366
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.29 E-value=0.39 Score=51.44 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=40.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.++++.||||||||..+++|-+-.. ...++|+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 5899999999999999999986643 357999999999988877766654
No 367
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=1.6 Score=46.65 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..++.||.|+|||..+.+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4569999999999987543
No 368
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.21 E-value=0.66 Score=42.79 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.|..+++.|++|+|||.-.+-.+...+.+. +.++++++- .+-.+++.+.++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 456889999999999987666666666541 357787773 34446666655554
No 369
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.14 E-value=3.2 Score=42.60 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=69.2
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEe-----Cccccc-CCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT-----DAAARG-IDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T-----~~~~~G-iDip~ 491 (548)
..+..+||.++|++.+..+...+.+. ++.+.+++|+.+...+.+-+ +.+..|+|+| +.+.+| +|+..
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l---~~gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL---ERGVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH---hcCCcEEEeCChHHHHHHHcCCccccc
Confidence 34667999999999999999988775 34578999998877765443 4678999999 455665 78888
Q ss_pred CCEEEE--------ecCCCCHHHHHHHhccccc
Q 045757 492 VSHVIQ--------ADFATSAVDFLHRVGRTAR 516 (548)
Q Consensus 492 v~~VI~--------~~~p~s~~~~~Qr~GR~gR 516 (548)
|++++. +++-..+...++.++|.-|
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 888885 3333456677777777766
No 370
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.10 E-value=0.66 Score=43.15 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.|..+++.|++|+|||.-.+-.+.+.+ . .+.+++|+. +.+-..|+.+.+.++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 457889999999999976555555544 2 256788887 4566666666666543
No 371
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.03 E-value=1.4 Score=46.39 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..++.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999977543
No 372
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.98 E-value=1.2 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchhHHhHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~i 142 (548)
|+-+.+.||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4567799999999998854433
No 373
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=89.96 E-value=0.41 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=33.9
Q ss_pred cccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
.-.+.+++++.|.||||||.+ +-.++..+..+ +.+++|.=|.-+.....
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~----------------g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQIRAR----------------GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT----------------T-EEEEEEETTHHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHHHHc----------------CCEEEEEECCchHHHHh
Confidence 334568999999999999964 56777777665 56788888886665443
No 374
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.95 E-value=1.3 Score=41.06 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCceEEecCCCCHHHHHHHHHhhc-cC----CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccc-cCCCcc
Q 045757 448 GIECYCYHKDLSLEERAKTLVNFQ-EK----GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTA-RAGQYG 521 (548)
Q Consensus 448 ~~~~~~~~~~~~~~~r~~~~~~f~-~~----~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~g-R~g~~G 521 (548)
++.+..++++.+.+. -.|. +. ..|+|.-+.++||+.++++.+......+....++.||.=--| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 578888887655433 2343 22 589999999999999999999999999998889999854445 666678
Q ss_pred eEEEEeecCchhHHHHHHHH
Q 045757 522 LVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 522 ~~i~~~~~~~~~~~~~i~~~ 541 (548)
.|=++.++.-...++.|.+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred ceEEecCHHHHHHHHHHHHH
Confidence 88888888776666666544
No 375
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.93 E-value=1.1 Score=51.47 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=61.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC-cccccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD-AAARGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~-~~~~GiDip~v~~VI 496 (548)
.+.+++|.++++..+..+++.+++. ++.+..+++..+..++..+++... ++.+|+|+|. .+...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4679999999999999999888753 467888999999999999998887 6779999995 444456777888877
Q ss_pred E
Q 045757 497 Q 497 (548)
Q Consensus 497 ~ 497 (548)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 376
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.89 E-value=1 Score=47.10 Aligned_cols=54 Identities=24% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCcccccCCCHHHHHHHHHC--CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|+++.-.+.....+.+. -+..+..++... ..-.+++++.+|+|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 456788887655555444331 122233333221 112367999999999999753
No 377
>PRK09183 transposase/IS protein; Provisional
Probab=89.78 E-value=0.79 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=18.9
Q ss_pred ccCCCcEEEEccCCCchhHHhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l 140 (548)
+..|.++++.||+|+|||..+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 45678999999999999976543
No 378
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.68 E-value=0.78 Score=44.53 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
.++++.||.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999965
No 379
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.62 E-value=0.44 Score=49.29 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=19.3
Q ss_pred cHHHHhhhhcccCC--CcEEEEccCCCchhHH
Q 045757 108 SIVQAASVGPVLSG--KDVVIAAETGSGKTHS 137 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~ 137 (548)
.+-|.+.+..++.. .-++++||||||||.+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 34444444444332 3468999999999976
No 380
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.60 E-value=0.78 Score=38.91 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTA 149 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~ 149 (548)
..+++.++.|+|||.. ++-+.+.+.+.
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc
Confidence 4689999999999965 56677666543
No 381
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.59 E-value=0.25 Score=48.84 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=16.8
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
-.|+.+.|.||+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3689999999999999964
No 382
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.55 E-value=2.3 Score=43.01 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.0
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..++.||.|+|||.++.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34889999999999876443
No 383
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.52 E-value=2.4 Score=42.15 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=18.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
+-.++.||.|+||+..+. .+...++.
T Consensus 42 HA~Lf~Gp~G~GK~~lA~-~~A~~Llc 67 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAY-RMARFLLA 67 (365)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHhC
Confidence 358999999999997743 44444543
No 384
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.38 E-value=1.2 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCchhHHhHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~i 142 (548)
++.+.+.+|+|+|||.+..-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4677899999999998754433
No 385
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.33 E-value=0.73 Score=48.66 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.3
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
..+++.+|.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46889999999999886543
No 386
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.15 E-value=0.79 Score=48.04 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.9
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
-.++.||.|+|||..+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999987544
No 387
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.14 E-value=0.3 Score=45.26 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=12.0
Q ss_pred EEEEccCCCchhHH
Q 045757 124 VVIAAETGSGKTHS 137 (548)
Q Consensus 124 ~ii~a~TGsGKTl~ 137 (548)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999963
No 388
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.12 E-value=2.5 Score=45.50 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEe-----Ccccc-cCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT-----DAAAR-GIDIPN 491 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T-----~~~~~-GiDip~ 491 (548)
...++||.|+++..+..+++.+... ++.+..+||+.+.+.+... ++.+..|+|+| +.+.+ .+++.+
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LRQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 4568999999999999998887654 6788889999876655433 34567999999 33333 367788
Q ss_pred CCEEEE
Q 045757 492 VSHVIQ 497 (548)
Q Consensus 492 v~~VI~ 497 (548)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888774
No 389
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.12 E-value=1.8 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.7
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEK 145 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~ 145 (548)
.|.-+.+.+++|+|||...+..+.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999997655444433
No 390
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.08 E-value=2.6 Score=44.13 Aligned_cols=68 Identities=18% Similarity=0.328 Sum_probs=55.4
Q ss_pred EEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccccc-CCCCCCCEE
Q 045757 427 TMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAARG-IDIPNVSHV 495 (548)
Q Consensus 427 ~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~G-iDip~v~~V 495 (548)
+||+++|++.|..+++.+... ++.+..++|+++...+...++. +.+|+|+|. .+.+| +|+..+.++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~~~ivVaTPGRllD~i~~~~l~l~~v~~l 178 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---GVDIVVATPGRLLDLIKRGKLDLSGVETL 178 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---CCCEEEECccHHHHHHHcCCcchhhcCEE
Confidence 999999999999999988754 4667899999988877755554 589999994 56666 888888888
Q ss_pred EE
Q 045757 496 IQ 497 (548)
Q Consensus 496 I~ 497 (548)
|.
T Consensus 179 Vl 180 (513)
T COG0513 179 VL 180 (513)
T ss_pred Ee
Confidence 85
No 391
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=88.96 E-value=0.52 Score=47.84 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=35.1
Q ss_pred hcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
+.-...+++++.|+||+|||.. +..++..+... +..++|+=|.-++...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----------------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR----------------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc----------------CCCEEEEeCCcchhHh
Confidence 4444568999999999999975 44455555443 5688999998776543
No 392
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.89 E-value=1.3 Score=47.13 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchhHHhHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..+++||.|+|||.++.+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 45889999999999876443
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.89 E-value=0.66 Score=41.62 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.3
Q ss_pred EEEEccCCCchhHHh
Q 045757 124 VVIAAETGSGKTHSY 138 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~ 138 (548)
++++||||+|||.+.
T Consensus 4 i~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCchHhHH
Confidence 678999999999874
No 394
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.88 E-value=2.3 Score=46.52 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 469999999999999764
No 395
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.85 E-value=4.6 Score=36.30 Aligned_cols=74 Identities=11% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-----ccc-cCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-----AAR-GIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-----~~~-GiDip~v 492 (548)
.+.++||.++++..+...++.+... ++.+..++|+.+..+... .+.++..|+|+|.- +.. -.+++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---KLKRGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcCCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 4678999999999999888777655 677888999987766543 33467799999942 222 2567788
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
+++|.-.
T Consensus 145 ~~lIvDE 151 (203)
T cd00268 145 KYLVLDE 151 (203)
T ss_pred CEEEEeC
Confidence 8887544
No 396
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.84 E-value=0.43 Score=50.49 Aligned_cols=37 Identities=30% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHhhhhcccC--CCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 109 IVQAASVGPVLS--GKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 109 ~~Q~~~i~~i~~--g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+-|.+.+..++. +..++++||||||||.+. ..++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 334444433332 346789999999999773 3444443
No 397
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.83 E-value=1.6 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.8
Q ss_pred cEEEEccCCCchhHHhHH
Q 045757 123 DVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l 140 (548)
..++.||.|+|||..+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.75 E-value=0.53 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+..++++++||||||... -.++..+
T Consensus 80 ~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 80 HGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 346899999999999753 3344443
No 399
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=88.70 E-value=0.51 Score=46.57 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred CcHHHHhhhhccc---CCCcEEEEccCCCchhHH
Q 045757 107 PSIVQAASVGPVL---SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 107 ~~~~Q~~~i~~i~---~g~~~ii~a~TGsGKTl~ 137 (548)
+.+.=.+++..+. .|+..+|.||.|+|||..
T Consensus 152 ~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 152 PEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred CcccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 3444555555544 789999999999999953
No 400
>CHL00176 ftsH cell division protein; Validated
Probab=88.68 E-value=2.9 Score=44.87 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=29.1
Q ss_pred CCCcccccCCCHHHHHHHHHC--CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|+++.--+...+.+.+. -+..+..++.-. ....+++++.||+|+|||+.+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 456788775444444444332 111222211111 112367999999999999754
No 401
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=88.63 E-value=0.71 Score=48.67 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=48.9
Q ss_pred HHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 110 VQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 110 ~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
-|..|....+..+=.++++|.|+|||++-+ -+++.++.+. ......-.+|++|-|..-+.|...-+-
T Consensus 382 Sq~~A~qs~ltyelsliqgppGTgkt~vtl-kav~tLL~n~----------s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 382 SQQFAKQSKLTYELSLIQGPPGTGKTLVTL-KAVDTLLLNS----------SGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred HHHHHHHHHhhhhhheeecCCCCCceeehH-HHHHHHHhcc----------cccccccceeeeehhhHHHHHHHHHHH
Confidence 377788777777888999999999999954 4556555441 111234579999999999888866544
No 402
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.83 Score=48.04 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCCcEEE-eChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 211 IGKPDVIV-STPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 211 ~~~~~Ilv-~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
++...-.| +-|+++.+.++.-.-. =-++.+||+|.+.....+.-...+++.+-
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~-------NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTE-------NPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCC-------CceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 34444444 6799999988654321 23788999999985555555666666553
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=1.2 Score=41.79 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=49.6
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCC-----cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGK-----DVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~-----~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~ 155 (548)
.+++.|++..--+.-.++|++.=| -|+ =+|.+..|+ .+++-+|.|+||++.+ ..+...
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLA-----KAVATE------ 189 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLA-----KAVATE------ 189 (439)
T ss_pred CCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHHH-----HHHHhh------
Confidence 456678877433344455554321 111 125566664 5889999999999542 222111
Q ss_pred CCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 156 SNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 156 ~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
..-..+-+.+..|+..|.-+-.++.
T Consensus 190 ----------AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 190 ----------ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred ----------cCCceEEeehHHHHHHHhccHHHHH
Confidence 2367888888888888766555554
No 404
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.58 E-value=0.46 Score=46.46 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..+++++|+|+||||||..
T Consensus 158 ~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HcCCcEEEECCCCCCHHHH
Confidence 3578999999999999964
No 405
>PHA00547 hypothetical protein
Probab=88.26 E-value=1.6 Score=40.08 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.9
Q ss_pred HHhhhhcccCCCcEEEEccCCCchhHHhH
Q 045757 111 QAASVGPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 111 Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
|.+.+..+-+..=.++.|+-|+|||+...
T Consensus 65 ~~k~VK~ik~spis~i~G~LGsGKTlLMT 93 (337)
T PHA00547 65 AFRLVNFIWDNPLSVIIGKLGTGKTLLLT 93 (337)
T ss_pred HHHHHHHHhcCCceEEeccCCCchhHHHH
Confidence 33444555566678999999999997643
No 406
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.22 E-value=0.41 Score=44.67 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.7
Q ss_pred ccCCCcEEEEccCCCchhH
Q 045757 118 VLSGKDVVIAAETGSGKTH 136 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl 136 (548)
+-.|+.+++.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478999999999999994
No 407
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=88.21 E-value=0.59 Score=49.93 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=39.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.++++.||||+|||..+.+|-+-.. +.-++|+=|.-|+........++.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~-------------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW-------------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC-------------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999975432 457888889999988777766554
No 408
>PRK06904 replicative DNA helicase; Validated
Probab=88.13 E-value=5 Score=41.49 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred hhhhcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 113 ASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 113 ~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+.+..+..|.=+++.|.+|.|||.- .+-++..+
T Consensus 213 ~~t~Gl~~G~LiiIaarPg~GKTaf-alnia~~~ 245 (472)
T PRK06904 213 KKTAGLQPSDLIIVAARPSMGKTTF-AMNLCENA 245 (472)
T ss_pred HHHhccCCCcEEEEEeCCCCChHHH-HHHHHHHH
Confidence 3344455556678899999999964 44444444
No 409
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.06 E-value=1.9 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.5
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..++.||.|+|||..+. .+...+.
T Consensus 47 a~L~~G~~G~GKttlA~-~lA~~Ll 70 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF-HLANHIL 70 (351)
T ss_pred eEeeECCCCCCHHHHHH-HHHHHHc
Confidence 58999999999997643 3444443
No 410
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.00 E-value=0.68 Score=41.67 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-+++++|||||||...
T Consensus 3 lilI~GptGSGKTTll 18 (198)
T cd01131 3 LVLVTGPTGSGKSTTL 18 (198)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999763
No 411
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=87.93 E-value=2.7 Score=43.49 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=55.1
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccc-ccCCCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAA-RGIDIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~-~GiDip~v 492 (548)
..++||.+++++.+..+++.++.. +..+..++|+.+...+.. .+..+..|+|+|. .+. ..+++.++
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLEHGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---HhcCCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 457999999999999999888754 577889999988766543 3346779999993 333 35778888
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 149 ~~lViDE 155 (460)
T PRK11776 149 NTLVLDE 155 (460)
T ss_pred CEEEEEC
Confidence 8888543
No 412
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.87 E-value=2 Score=43.15 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.6
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+.+++.||.|+|||..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5689999999999976543
No 413
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.81 E-value=0.12 Score=36.26 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.2
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|...++.+++|+|||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355799999999999964
No 414
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=87.74 E-value=3.7 Score=43.29 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=70.7
Q ss_pred cchhhHHHHHHHHHHHhhccCCCCcEEEEeCChh----HHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVD----AVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 402 ~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
.....+.+++..+... ..+..+..-++|.- +.+.+.++|...|+.+..+.|.+...+|.+++.... |..+|
T Consensus 293 GSGKTvVA~laml~ai----~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~i 368 (677)
T COG1200 293 GSGKTVVALLAMLAAI----EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDI 368 (677)
T ss_pred CCCHHHHHHHHHHHHH----HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCE
Confidence 3334445555544443 46788999999965 445666677778999999999999999999999998 66799
Q ss_pred EEEeCcc-cccCCCCCCCEEEE
Q 045757 477 FVCTDAA-ARGIDIPNVSHVIQ 497 (548)
Q Consensus 477 Lv~T~~~-~~GiDip~v~~VI~ 497 (548)
+|.|-++ ...+++.++-.||.
T Consensus 369 vVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 369 VVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEEcchhhhcceeecceeEEEE
Confidence 9999554 57888888888874
No 415
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.65 E-value=5.9 Score=37.46 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCchhHHhHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~i 142 (548)
+..+.+.+++|+|||..+...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3678899999999998765443
No 416
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.61 E-value=0.58 Score=51.42 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 4789999999999654
No 417
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.49 E-value=1.1 Score=41.73 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
.++++.+|.|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 579999999999996543
No 418
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.42 E-value=0.57 Score=52.18 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHhhhhcccC-------C--------CcEEEEccCCCchhHHh
Q 045757 109 IVQAASVGPVLS-------G--------KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 109 ~~Q~~~i~~i~~-------g--------~~~ii~a~TGsGKTl~~ 138 (548)
..|..++..+.. | ..++++||||+|||..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 358887765531 1 14789999999999764
No 419
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.38 E-value=2.1 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.7
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
..+++.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 5689999999999987543
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.04 E-value=4.3 Score=41.03 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHhH
Q 045757 123 DVVIAAETGSGKTHSYL 139 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~ 139 (548)
-+.+++++|+|||.+..
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997743
No 421
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.97 E-value=0.92 Score=43.98 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 106 RPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
.+++.|..-+..+. .+++++++++||||||.. +.+++..+
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I 167 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI 167 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC
Confidence 67888877776555 568999999999999964 45555544
No 422
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.92 E-value=2.3 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=18.8
Q ss_pred CCc-EEEEccCCCchhHHhHHHHHHHHH
Q 045757 121 GKD-VVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 121 g~~-~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
..+ +++.||.|+|||.++. .+...+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~-~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL-ALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH-HHHHHHh
Confidence 345 9999999999998743 4444443
No 423
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=86.90 E-value=0.95 Score=48.34 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=45.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhcc--cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 93 DRLIRALENSGFGRPSIVQAASVGPV--LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
..+.+.+++.+- .+++-..-+|.. .+.+++++.|.||||||.+ +--++..+..+ +.+++
T Consensus 157 ~~l~k~lk~~~~--~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~R----------------GdrAI 217 (732)
T PRK13700 157 KDVARMLKKDGK--DSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQR----------------GDMVV 217 (732)
T ss_pred HHHHHHHHhcCC--CCCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHHc----------------CCeEE
Confidence 456666666653 345544455443 3568999999999999986 45566666544 55677
Q ss_pred EEcCcHHHHH
Q 045757 171 VLCPNVVLCE 180 (548)
Q Consensus 171 il~Pt~~L~~ 180 (548)
|.=|+-+.+.
T Consensus 218 IyD~~GeFv~ 227 (732)
T PRK13700 218 IYDRSGEFVK 227 (732)
T ss_pred EEeCCCchHH
Confidence 7777655544
No 424
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=86.79 E-value=5 Score=38.13 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=57.2
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH-HHHHhhcccCCCcEEEEEE
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR-MANALSADNGEPLVRAVAV 203 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~-~~~~~~~~~~~~~~~~~~~ 203 (548)
++.|.-|-|||++.---++..+++. |...|+|=-...=+..+.. .+..+........+.+.
T Consensus 21 ~viG~RgiGKtya~k~~~i~df~~~----------------G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk-- 82 (333)
T PF05894_consen 21 FVIGARGIGKTYALKKKLIKDFIEY----------------GEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVK-- 82 (333)
T ss_pred EEEecccccchhHHHHHHHHHHHhc----------------CCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEE--
Confidence 4559999999999777778888776 7888888665544433333 22233222211113322
Q ss_pred eCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecch
Q 045757 204 CGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEAD 251 (548)
Q Consensus 204 ~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah 251 (548)
|.. .-.++-.|...+|-.-+..+++. ...++..||+||+-
T Consensus 83 -~~k-~~idgk~~g~~~~Ls~~q~~Ks~------~Yp~V~~IvfDEfi 122 (333)
T PF05894_consen 83 -GNK-IYIDGKLIGYFIPLSGWQKLKSS------SYPNVYTIVFDEFI 122 (333)
T ss_pred -ccE-EEECCeEEEEEEecchhhhcccC------CCCcEEEEEEEEEE
Confidence 221 11222234444444444444332 37789999999986
No 425
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.77 E-value=2.3 Score=46.79 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.|+++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 69999999999999764
No 426
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=86.73 E-value=0.66 Score=49.32 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=39.9
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.++++.||||+|||..+.+|-+-.. +.-++|+=|.-|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999975432 467999999999987777655554
No 427
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.72 E-value=1.1 Score=41.48 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
++++.|.|.||||||.+.. -+++.+.+. .+..++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~-~ll~~l~~~---------------~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVK-VLLEELLKK---------------KGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHH-HHHHHHHhc---------------CCCCEEEEcCCCc
Confidence 4789999999999998743 455666522 3678888888643
No 428
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.71 E-value=1.3 Score=43.59 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHCCCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHH
Q 045757 97 RALENSGFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 97 ~~l~~~~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~ 137 (548)
..+.+.|+ +++.+.+.+..+. .+++++++++||+|||..
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 44445553 5667777776655 457999999999999964
No 429
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.58 E-value=2.4 Score=41.07 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=28.6
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
-.|.-+.|.+|.|+|||...+..+.+.. . .+..++++-.--.+-
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~-~----------------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ-K----------------AGGTAAFIDAEHALD 96 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-H----------------cCCcEEEEcccchhH
Confidence 3456788999999999976544444332 2 267788886544333
No 430
>PRK10867 signal recognition particle protein; Provisional
Probab=86.47 E-value=3.6 Score=41.79 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=15.4
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~i 142 (548)
-+++++++|+|||.+..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 46789999999998754333
No 431
>PHA00149 DNA encapsidation protein
Probab=86.43 E-value=5.1 Score=37.47 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=57.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEe
Q 045757 125 VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVC 204 (548)
Q Consensus 125 ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 204 (548)
++.|.-|-|||++..--++..+... +...++|=-...=....-..+...........+.+-
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~k----------------geqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vk--- 81 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIKK----------------GEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVK--- 81 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHhc----------------CcEEEEEEecchhhhhhhhhhHHHHHhCCCCceEEE---
Confidence 4569999999998776677777765 677888865543332222222222111111113332
Q ss_pred CCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 205 GGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 205 g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
| .+.-.++-.|....|-+.++.+++. ...++..|++||.-.
T Consensus 82 g-~ki~~~~k~igy~i~LS~~q~~Ks~------~Yp~V~~I~fDEfi~ 122 (331)
T PHA00149 82 G-RKIYIKGKLIGYAIPLSTWQALKSS------AYPNVSTIFFDEFIR 122 (331)
T ss_pred c-cEEEEcCeEEEEEEehhhHHhhccc------CCCceEEEEeeeeee
Confidence 2 2222233445555555555555433 277899999999875
No 432
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.38 E-value=0.72 Score=49.43 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=40.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.++++.||||||||..+++|-+... ..-++|+=|--|+........++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~-------------------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW-------------------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC-------------------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 6899999999999999999987654 457899999999988777665543
No 433
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.24 E-value=2.4 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
+..++.||.|+|||..+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLAL 32 (188)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 434
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.07 E-value=0.9 Score=41.87 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=17.4
Q ss_pred cEEEEccCCCchhHHhHHHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+++|.|++|||||.. ++-++..+
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhh
Confidence 789999999999954 45555444
No 435
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=86.03 E-value=1.4 Score=48.10 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 104 ~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
.-..+|-|.+++..-+..+.+.+.+|+|+|||-.+ .-++..+..+ -+..+++|++.+..-.+|..
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~a-vqil~~lyhn--------------~p~qrTlivthsnqaln~lf 800 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVA-VQILSVLYHN--------------SPNQRTLIVTHSNQALNQLF 800 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchh-hhhhhhhhhc--------------CCCcceEEEEecccchhHHH
Confidence 34568899999998888899999999999999774 3455555544 36789999999999999988
Q ss_pred HHHHHhh
Q 045757 184 RMANALS 190 (548)
Q Consensus 184 ~~~~~~~ 190 (548)
+.+.++-
T Consensus 801 eKi~~~d 807 (1320)
T KOG1806|consen 801 EKIMALD 807 (1320)
T ss_pred HHHHhcc
Confidence 8777654
No 436
>PRK09354 recA recombinase A; Provisional
Probab=85.96 E-value=2.3 Score=41.69 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.|.-+.|.+|+|+|||...+..+.+.. . .+..++|+..--.+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~----------------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K----------------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H----------------cCCcEEEECCccchHH
Confidence 345677999999999987555444433 2 2678888876555543
No 437
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=2 Score=44.89 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=33.7
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+..+..+|.+.+--......+++. .+..+..++. ..+-..+.+++.||.|+|||+.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~---~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRK---LGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHh---cCCCCCCeeEEECCCCCCHHHHH
Confidence 344556778899887434444444322 1112222222 11223357999999999999764
No 438
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.90 E-value=0.53 Score=44.82 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=19.2
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEK 145 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~ 145 (548)
..+++++++|+||||||... -.++..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~ 150 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEE 150 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred ccceEEEEECCCccccchHH-HHHhhh
Confidence 34689999999999999763 334443
No 439
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.84 E-value=0.56 Score=44.35 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=20.5
Q ss_pred hhhcccCCCcEEEEccCCCchhHHhH
Q 045757 114 SVGPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 114 ~i~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
++..+..|+++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 33445578999999999999997653
No 440
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.77 E-value=0.9 Score=44.44 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.1
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.-+++.+|.|+|||+.+
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 45788999999999753
No 441
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.68 E-value=2.2 Score=44.19 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=21.7
Q ss_pred HhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 510 RVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 510 r~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
+.-++-|.-..|..+..+.....+.+..=.+.++..+|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (486)
T PRK14953 406 ILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFP 443 (486)
T ss_pred HHhhhhhhhhcCceEEEecccHHHHHHHHHHHHHHhCC
Confidence 33455566667888877776655555444444444443
No 442
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=85.55 E-value=1.8 Score=43.14 Aligned_cols=46 Identities=30% Similarity=0.545 Sum_probs=35.1
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
.+.++++|++.+.+.|.+. ...+++++|.|+|||. |..++.+.+..
T Consensus 244 ~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsT-FaqAlAefy~~ 289 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKST-FAQALAEFYAS 289 (604)
T ss_pred echhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhH-HHHHHHHHHHh
Confidence 3577889999999988763 2459999999999994 55566666554
No 443
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.55 E-value=1.9 Score=44.91 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHhH
Q 045757 123 DVVIAAETGSGKTHSYL 139 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~ 139 (548)
..++.||.|+|||.++.
T Consensus 38 ayLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 38 AYLFSGLRGSGKTSSAR 54 (535)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 45899999999997753
No 444
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.44 E-value=2.1 Score=47.76 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 68999999999999764
No 445
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.39 E-value=0.65 Score=49.79 Aligned_cols=48 Identities=21% Similarity=0.150 Sum_probs=38.3
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANA 188 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~ 188 (548)
.++++.||||||||..+++|.+... +..++|+=|--|+..-.....++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------------------~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------------------GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 5799999999999999998887543 45799999999997666554433
No 446
>PHA00350 putative assembly protein
Probab=85.38 E-value=1.7 Score=43.28 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.4
Q ss_pred EEEEccCCCchhHHhHH
Q 045757 124 VVIAAETGSGKTHSYLV 140 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l 140 (548)
.++.|..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47889999999988665
No 447
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.34 E-value=5 Score=37.31 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=16.5
Q ss_pred cEEEEccCCCchhHHhHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIE 144 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~ 144 (548)
-.++.||.|+|||...+-.++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999775544443
No 448
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.27 E-value=5.5 Score=40.88 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=54.8
Q ss_pred CCcEEEEeCChhHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc------ccccCCCCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKT----AGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA------AARGIDIPNVS 493 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~------~~~GiDip~v~ 493 (548)
..++||.++++..+..+++.+.. .++.+..++|+.+..++... +.+..+|+|+|.- ....+++.+++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---FSENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---hcCCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 46899999999999988876654 46789999999887766543 3456789999951 12456778888
Q ss_pred EEEEec
Q 045757 494 HVIQAD 499 (548)
Q Consensus 494 ~VI~~~ 499 (548)
+||.-.
T Consensus 150 ~lViDE 155 (434)
T PRK11192 150 TLILDE 155 (434)
T ss_pred EEEEEC
Confidence 887644
No 449
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.25 E-value=0.95 Score=50.10 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.+|+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3457999999999999653
No 450
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=7.5 Score=39.78 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=31.2
Q ss_pred ccCCCHHHHHHHHHCCCCCCcHHHHhhhhccc-------C----C-CcEEEEccCCCchhH
Q 045757 88 SLGLSDRLIRALENSGFGRPSIVQAASVGPVL-------S----G-KDVVIAAETGSGKTH 136 (548)
Q Consensus 88 ~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-------~----g-~~~ii~a~TGsGKTl 136 (548)
.+|.+++-++.+...|+....+.=.+.+..-. . + -.+++.+|.|||||.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTa 553 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTA 553 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHH
Confidence 45777777777777666555444444442211 0 1 368999999999994
No 451
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=85.18 E-value=4.1 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++|+.+|.|+|||..+
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CceEEecCCCCchHHHH
Confidence 47899999999999643
No 452
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=85.17 E-value=2.4 Score=43.27 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=24.6
Q ss_pred CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhH
Q 045757 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
|+.+..+-=-+.+..+..|.-+++.|++|.|||...+
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al 212 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLAL 212 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHH
Confidence 4444444444455555566778899999999996543
No 453
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.17 E-value=3.9 Score=43.90 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=37.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH--HHHHHHHHHHHhhc
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV--LCEQVVRMANALSA 191 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~--L~~q~~~~~~~~~~ 191 (548)
.++++|.|+||+|||..+.+ ++...+.. +..++++=|--. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~-l~~q~i~~----------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAEL-LITQDIRR----------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHHHc----------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 36899999999999977644 44444443 456777777643 77777777766653
No 454
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.05 E-value=2 Score=46.30 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..+++||.|+|||.++-+
T Consensus 41 HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3468999999999987644
No 455
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.92 E-value=0.98 Score=42.86 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.9
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
-++-+++.||.|+|||-
T Consensus 176 ~NRliLlhGPPGTGKTS 192 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTS 192 (423)
T ss_pred eeeEEEEeCCCCCChhH
Confidence 34567899999999994
No 456
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=84.78 E-value=2.4 Score=39.17 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=33.1
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
-.|.-+++.+++|+|||....-.+.. ... ++.++++++. .+-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~----------------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ----------------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh----------------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 44678899999999999764333333 322 2467888884 33445555555444
No 457
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.78 E-value=1.7 Score=40.56 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=27.1
Q ss_pred ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEc
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLC 173 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~ 173 (548)
+..|.-++|.|++|+|||...+-.+...+.. .+..++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----------------~g~~vly~s 49 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK----------------QGKPVLFFS 49 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------------CCCceEEEe
Confidence 3456788999999999996544334443332 156788887
No 458
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=84.76 E-value=4.6 Score=41.01 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=15.6
Q ss_pred cEEEEccCCCchhHHhHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~i 142 (548)
-+++++++|+|||.+..-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47799999999998754433
No 459
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.75 E-value=3.3 Score=44.30 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..+++||.|+|||.++.+
T Consensus 40 hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3478999999999986443
No 460
>PRK08840 replicative DNA helicase; Provisional
Probab=84.69 E-value=5.7 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=27.5
Q ss_pred CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
|+.+..+---+.+..+..|.=+++.|.+|.|||.-+ +-++..+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafa-lnia~~~ 241 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFA-MNLCENA 241 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHH-HHHHHHH
Confidence 444444444555556666677888999999999654 3344443
No 461
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=84.65 E-value=2.9 Score=45.53 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++-|++++... ...++|.|..|||||-+..--+...+... ......+|.++=|+.-+.++.+.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~-------------~v~p~~Il~vTFTnkAA~em~~R 66 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAG-------------GVDPEQILAITFTNKAAAEMRER 66 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcC-------------CcChHHeeeeechHHHHHHHHHH
Confidence 5788999999877 67899999999999998666666665432 11223588999999999999888
Q ss_pred HHHhhc
Q 045757 186 ANALSA 191 (548)
Q Consensus 186 ~~~~~~ 191 (548)
+.++..
T Consensus 67 l~~~~~ 72 (655)
T COG0210 67 LLKLLG 72 (655)
T ss_pred HHHHhC
Confidence 888864
No 462
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.63 E-value=14 Score=38.35 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc-ccc------cC-CCCCCCE
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA-AAR------GI-DIPNVSH 494 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~-~~~------Gi-Dip~v~~ 494 (548)
++.+||.+|++..++...+.|...++.+..++++.+..++..++.... ++.+|+++|.- +.. .+ ....+++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 568999999999999999999999999999999999999998888887 56799988842 221 12 4456777
Q ss_pred EEEec
Q 045757 495 VIQAD 499 (548)
Q Consensus 495 VI~~~ 499 (548)
||.-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 66543
No 463
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.47 E-value=2.4 Score=40.96 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
++++++.|++|+|||.... .+...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 5689999999999998643 45555543
No 464
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.45 E-value=0.44 Score=40.19 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=15.7
Q ss_pred EEEEccCCCchhHHhHHHHH
Q 045757 124 VVIAAETGSGKTHSYLVPLI 143 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il 143 (548)
.++.+|.|+|||..|.....
T Consensus 5 ~IvaG~NGsGKstv~~~~~~ 24 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLA 24 (187)
T ss_pred EEEecCCCCCceeeeeccch
Confidence 47889999999988765433
No 465
>PHA00012 I assembly protein
Probab=83.82 E-value=2.7 Score=40.37 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.3
Q ss_pred EEEEccCCCchhHHhHHHHHHHH
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
-++.|..|+|||+.+..-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47889999999998776666655
No 466
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=1.3 Score=42.73 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=35.2
Q ss_pred eecCCCcccccC-CCHHHHHHHHH--CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 79 FADDNVTWKSLG-LSDRLIRALEN--SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 79 ~~~~~~~~~~l~-l~~~l~~~l~~--~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
...+..++++.| |.+.+.+.-+. +-+..|--++.-.|.. -+.+++.+|.|+|||+.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P---PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDP---PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC---CCceEeeCCCCCcHHHH
Confidence 344667788886 66666543332 3444444444433322 47899999999999975
No 467
>PRK14701 reverse gyrase; Provisional
Probab=83.64 E-value=3.2 Score=49.46 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
.+.+++|.+|++..+..+++.|+.. ++.+..+||+++..++.+.++.+. ++.+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999998873 467789999999999999888888 56799999964
No 468
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.48 E-value=4.9 Score=39.08 Aligned_cols=26 Identities=23% Similarity=0.338 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
+..++.||.|+||+..+ ..++..++.
T Consensus 27 ha~Lf~G~~G~Gk~~~A-~~~a~~llc 52 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAA-LCFIEGLLS 52 (314)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 57899999999999764 344444443
No 469
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=83.42 E-value=1.6 Score=46.06 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=28.8
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
.+.+++++.|+||||||.+ +-.++..+..+ +.+++|+=|.-+
T Consensus 174 ~e~~h~li~G~tGsGKs~~-i~~ll~~~~~~----------------g~~~ii~D~~g~ 215 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSVA-IRKLLRWIRQR----------------GDRAIIYDKGCT 215 (566)
T ss_pred ccccceEEEcCCCCCHHHH-HHHHHHHHHhc----------------CCeEEEEECCCC
Confidence 3457999999999999964 44455555443 456777777533
No 470
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=83.41 E-value=1.7 Score=45.98 Aligned_cols=51 Identities=12% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCCcEEE-eChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhh
Q 045757 212 GKPDVIV-STPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269 (548)
Q Consensus 212 ~~~~Ilv-~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l 269 (548)
+.-.-.| +-|+++.+-+......+ -++++||+|.|.....+.=...+++-+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N-------Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN-------PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC-------CeEEeechhhccCCCCCChHHHHHhhc
Confidence 3344444 56999988775543221 378899999997766665566666554
No 471
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=83.27 E-value=2.1 Score=49.53 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.+++++|.|..|||||++-...++..++..- ...-..+|||+-|+.-+.++...+..-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------PLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------CCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 3679999999999999998888888877630 1123479999999998888876655443
No 472
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=83.20 E-value=5.5 Score=36.56 Aligned_cols=26 Identities=38% Similarity=0.409 Sum_probs=18.7
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIE 144 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~ 144 (548)
..|+-+.+.+++|+|||...+..+..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 34567889999999999765443333
No 473
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.07 E-value=0.99 Score=45.40 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=34.7
Q ss_pred ecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 80 ADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+..+|++++--+...+.+.+. .+..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 34667899997655555555432 2333333332222 23578999999999999753
No 474
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.00 E-value=2.3 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCchhHHhHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~i 142 (548)
.|+-+.+.||||+|||.+....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45668899999999998754433
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.88 E-value=2.5 Score=44.04 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.|..++|.+++|+|||.-++..+.+.+.+. +.++||++- .+-..++.+.+.++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~----------------ge~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHF----------------DEPGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC----------------CCCEEEEEE-ecCHHHHHHHHHHcC
Confidence 457899999999999987666665555331 457888874 355566666666654
No 476
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.79 E-value=3.1 Score=48.49 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
.++++|.|+-|||||.+..--++..+... .....+|+|+-|+.-+.++.+.+...+
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~--------------~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG--------------VPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC--------------CCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 46899999999999988666666555432 123589999999999999877665544
No 477
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.57 E-value=3.5 Score=38.85 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=19.6
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEK 145 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~ 145 (548)
-.|.-++|.|++|+|||.-.+-.+.+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678999999999997655444443
No 478
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.56 E-value=1.3 Score=49.30 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.||||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999765
No 479
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.54 E-value=3 Score=44.03 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchhHHhHH
Q 045757 122 KDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l 140 (548)
+..++.||.|+|||.++-+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999987543
No 480
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=82.52 E-value=0.87 Score=45.44 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 111 QAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 111 Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
+...++.-+.+++.+|.+.||+|||.+. -.+.+.+.
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvTL-qvlAE~fS 44 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVTL-QVLAEQFS 44 (502)
T ss_pred CceecChhhccccceeeccCCCCceehH-HHHHHHhh
Confidence 3344555566889999999999999873 34555553
No 481
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=82.52 E-value=1.5 Score=39.54 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=17.6
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHH
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
-+|.+|.||||| +|..-+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 578999999999 466666555543
No 482
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=82.49 E-value=3.3 Score=44.06 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH--HHHHHHHHHHHHhhcc
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV--VLCEQVVRMANALSAD 192 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~--~L~~q~~~~~~~~~~~ 192 (548)
..+.+|.|+||+|||..+.+.+.+.+ .. +..++++=|-. ++...+...+++.+..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i-~~----------------g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDI-RR----------------GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHH-Hc----------------CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 46899999999999988766555555 22 45788888864 5667777777776654
No 483
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=82.45 E-value=18 Score=38.88 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=51.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
.+.++|.+|.+..++...+.|+..|+.+..+|++++..++..++.... +..++++.|.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 467999999999999999999999999999999999999999888887 6678988873
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.32 E-value=14 Score=35.66 Aligned_cols=105 Identities=19% Similarity=0.293 Sum_probs=55.6
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcC--cHHHHHHHHHHHHHhhcccCCCcEEE
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCP--NVVLCEQVVRMANALSADNGEPLVRA 200 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~ 200 (548)
.+++++-.|+|||.+ +--+...+... +.++++.+- .|+=+.++.+.|-+- .| +.+
T Consensus 141 Vil~vGVNG~GKTTT-IaKLA~~l~~~----------------g~~VllaA~DTFRAaAiEQL~~w~er---~g---v~v 197 (340)
T COG0552 141 VILFVGVNGVGKTTT-IAKLAKYLKQQ----------------GKSVLLAAGDTFRAAAIEQLEVWGER---LG---VPV 197 (340)
T ss_pred EEEEEecCCCchHhH-HHHHHHHHHHC----------------CCeEEEEecchHHHHHHHHHHHHHHH---hC---CeE
Confidence 467899999999987 33444444433 455555542 466665555544333 23 333
Q ss_pred EEEeCCCCccCCCCcEEEeChHH-HHhhcChhhhhccccccCeeEEEEecchhhccC-ChHHHHHHHHhh
Q 045757 201 VAVCGGQGWPIGKPDVIVSTPAA-LLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG-SFQNQVIRLINM 268 (548)
Q Consensus 201 ~~~~g~~~~~~~~~~Ilv~Tp~~-l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~ 268 (548)
..-..|. .|.. ..+.+...+ -+++++|++|=|-||-+. +..+.++.+.+-
T Consensus 198 I~~~~G~------------DpAaVafDAi~~Ak------ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV 249 (340)
T COG0552 198 ISGKEGA------------DPAAVAFDAIQAAK------ARGIDVVLIDTAGRLHNKKNLMDELKKIVRV 249 (340)
T ss_pred EccCCCC------------CcHHHHHHHHHHHH------HcCCCEEEEeCcccccCchhHHHHHHHHHHH
Confidence 3211111 1221 233333332 456788888888877543 344455554433
No 485
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.21 E-value=3.6 Score=38.31 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=27.7
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
.-+.+++|+||.-.+++.+-+.++..++..++
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq 156 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQ 156 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHH
Confidence 34678999999999999999999998888775
No 486
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=82.17 E-value=3.9 Score=45.86 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH---------HHHHHHHHhh
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE---------QVVRMANALS 190 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~---------q~~~~~~~~~ 190 (548)
...+.++.||+|+|||...-..+....... ......+..++.+-....++. ++...+..+.
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~----------~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGD----------VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT 262 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccC----------CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH
Q ss_pred cccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCC
Q 045757 191 ADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGS 257 (548)
Q Consensus 191 ~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~ 257 (548)
...+ -.+|+|||+|.+...+
T Consensus 263 ~~~~-----------------------------------------------~~ILfIDEih~l~~~g 282 (852)
T TIGR03346 263 KSEG-----------------------------------------------QIILFIDELHTLVGAG 282 (852)
T ss_pred hcCC-----------------------------------------------CeEEEeccHHHhhcCC
No 487
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=82.09 E-value=3.6 Score=40.11 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999764
No 488
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=1.1 Score=44.23 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
-|+++.+||||||||.+
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 38999999999999764
No 489
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.77 E-value=1.4 Score=42.76 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..+++++++++||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3578999999999999964
No 490
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=81.56 E-value=1.3 Score=44.77 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.7
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+-......+..+..++++++.+|+|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44555666677778999999999999999764
No 491
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=81.48 E-value=1.9 Score=40.58 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=14.2
Q ss_pred EEEEccCCCchhHHhHHH
Q 045757 124 VVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~ 141 (548)
+-+.|+||+||.++.-+.
T Consensus 113 LSfHG~tGTGKN~Va~ii 130 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEII 130 (344)
T ss_pred EEecCCCCCchhHHHHHH
Confidence 346699999999987653
No 492
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=81.44 E-value=0.0055 Score=60.80 Aligned_cols=215 Identities=18% Similarity=0.087 Sum_probs=122.2
Q ss_pred CCCceeecCCCcccccCCCHHHHHHHHHCCCCCCc---------------------------------------HHHHhh
Q 045757 74 SSDTFFADDNVTWKSLGLSDRLIRALENSGFGRPS---------------------------------------IVQAAS 114 (548)
Q Consensus 74 ~~~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~---------------------------------------~~Q~~~ 114 (548)
.....+.+-..+|++.+....-...|.+.++..+. ..|..+
T Consensus 119 ~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~~~~e~r~t~~~ke~~~~~~qk~~ 198 (673)
T KOG0333|consen 119 GRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYGEMMEKRRTEDEKEQEEELLQKVC 198 (673)
T ss_pred cccccccceEEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhhhHhhhhcchhhhhhHHHHHHHhh
Confidence 34555666667788887766666666655543333 567888
Q ss_pred hhcccCCCc-----EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 045757 115 VGPVLSGKD-----VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 189 (548)
Q Consensus 115 i~~i~~g~~-----~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~ 189 (548)
.+.+..+.| ....+.|+.|++-.|.-+..-.+...-....-.+-...+-+....-+|.+|.-.++.++.+...-+
T Consensus 199 k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl 278 (673)
T KOG0333|consen 199 KKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPL 278 (673)
T ss_pred hhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccc
Confidence 888888876 888999999999876544433332110000000000111122223467788888888888888777
Q ss_pred hcccCCCcEEEEEEeCCC-CccCCCCcEEEeCh--HHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHH
Q 045757 190 SADNGEPLVRAVAVCGGQ-GWPIGKPDVIVSTP--AALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLI 266 (548)
Q Consensus 190 ~~~~~~~~~~~~~~~g~~-~~~~~~~~Ilv~Tp--~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~ 266 (548)
+...+.++..+.+.+|.+ .+...-..++..+| ..+.+.........+...+.+...|.||.+++.+. ++..+..++
T Consensus 279 ~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~-lg~r~vsvi 357 (673)
T KOG0333|consen 279 GLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKP-LGIRTVSVI 357 (673)
T ss_pred hhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccc-ccceEEEEe
Confidence 766665555555555554 34444445566677 44544444443333444556667777888766432 334444444
Q ss_pred hhhhccHH--HHhhhcccCcccccc
Q 045757 267 NMFRFDEK--QLSRMNESGVEKPLE 289 (548)
Q Consensus 267 ~~l~~~~~--~~~~~~~~~~~~~~~ 289 (548)
..+....+ +++.........|..
T Consensus 358 gg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 358 GGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred cccchhhhhhhhhccceeeecCchH
Confidence 44444444 445554444444443
No 493
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.41 E-value=1.1 Score=48.96 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.++++||||+|||..+
T Consensus 490 ~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999765
No 494
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=81.31 E-value=4.6 Score=43.00 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=53.2
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc--cCCCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR--GIDIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~--GiDip~v 492 (548)
..++||.++++..+..+++.+.+. ++.+..++|+.+...+...+ +++.+|||+|. .+.. .+++..+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l---~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL---QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH---hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 468999999999999998877654 57788999998877665443 35679999993 3322 3667777
Q ss_pred CEEEEe
Q 045757 493 SHVIQA 498 (548)
Q Consensus 493 ~~VI~~ 498 (548)
++||.-
T Consensus 161 ~~lViD 166 (572)
T PRK04537 161 EICVLD 166 (572)
T ss_pred eeeEec
Confidence 776643
No 495
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=81.28 E-value=4 Score=45.38 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH-----Hhhc-ccC
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN-----ALSA-DNG 194 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~-----~~~~-~~~ 194 (548)
..++.+.|+||||||++|+-.|++..... +..+.||+||+.++.+.+...++ .... ..+
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~ 123 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKY---------------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYE 123 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHc---------------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 36899999999999999887776655432 35689999999999988876655 2222 122
Q ss_pred CCcEEEEEEeCCCC-------cc-------------CCCCcEEEeChHHHHhhcChhhh----------hccccccCe-e
Q 045757 195 EPLVRAVAVCGGQG-------WP-------------IGKPDVIVSTPAALLNNIDPKRR----------RRMEFVRGV-K 243 (548)
Q Consensus 195 ~~~~~~~~~~g~~~-------~~-------------~~~~~Ilv~Tp~~l~~~l~~~~~----------~~~~~~~~~-~ 243 (548)
...++...+.++.+ .. .+...|+|.|-+++......... .....+... -
T Consensus 124 ~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~P 203 (986)
T PRK15483 124 NTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRP 203 (986)
T ss_pred CceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCC
Confidence 22356666655431 11 12578999999999653221111 011112222 2
Q ss_pred EEEEecchhhcc
Q 045757 244 YVVFDEADMLLC 255 (548)
Q Consensus 244 ~vV~DEah~l~~ 255 (548)
+||+||.|++-.
T Consensus 204 ivIiDEPh~~~~ 215 (986)
T PRK15483 204 VVIIDEPHRFPR 215 (986)
T ss_pred EEEEECCCCCCc
Confidence 799999998843
No 496
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.16 E-value=11 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHhH
Q 045757 124 VVIAAETGSGKTHSYL 139 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~ 139 (548)
+++.+++|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999998743
No 497
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=81.09 E-value=1.4 Score=36.45 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.5
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+++.++.|+|||.
T Consensus 21 ~~~~i~l~G~lGaGKTt 37 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTT 37 (133)
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 45678899999999995
No 498
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=81.00 E-value=3.9 Score=41.75 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred cEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC
Q 045757 426 RTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD 481 (548)
Q Consensus 426 ~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~ 481 (548)
-.|||++|++.+-.+...|... ++.+..+.|+|....++++++. ...|+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~---~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ---RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc---CCCEEEecc
Confidence 3999999999999999999765 7889999999999999998876 558999994
No 499
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.97 E-value=3.9 Score=40.59 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=16.8
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
+..++.||.|+|||..+ ..+...+
T Consensus 37 ~~~Ll~G~~G~GKt~~a-~~la~~l 60 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA-RIFAKAL 60 (355)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45789999999999654 3333443
No 500
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.96 E-value=0.8 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..++.++++||+|+|||..
T Consensus 31 ~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH
T ss_pred HcCCcEEEECCCCCchhHH
Confidence 3578999999999999964
Done!