Query 045757
Match_columns 548
No_of_seqs 286 out of 1969
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:43:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.9E-58 2.4E-62 466.7 40.9 362 80-543 52-421 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.8E-55 9.6E-60 447.7 35.6 376 79-543 10-396 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1E-54 3.4E-59 442.4 35.9 357 82-546 35-399 (410)
4 3sqw_A ATP-dependent RNA helic 100.0 2.7E-54 9.3E-59 456.7 33.6 380 83-546 16-414 (579)
5 1s2m_A Putative ATP-dependent 100.0 5.7E-54 2E-58 435.5 34.0 357 81-546 18-381 (400)
6 3eiq_A Eukaryotic initiation f 100.0 4.5E-54 1.5E-58 438.4 32.8 361 78-546 34-403 (414)
7 3i5x_A ATP-dependent RNA helic 100.0 6E-54 2E-58 454.2 33.5 379 83-545 67-464 (563)
8 1xti_A Probable ATP-dependent 100.0 1.8E-52 6.2E-57 423.2 36.0 355 84-545 8-373 (391)
9 3fht_A ATP-dependent RNA helic 100.0 9.4E-52 3.2E-56 421.0 39.8 359 82-546 23-396 (412)
10 1hv8_A Putative ATP-dependent 100.0 9.3E-53 3.2E-57 421.6 31.3 351 83-547 5-362 (367)
11 3pey_A ATP-dependent RNA helic 100.0 1.1E-51 3.6E-56 418.2 37.2 354 82-543 3-370 (395)
12 1fuu_A Yeast initiation factor 100.0 3.9E-53 1.3E-57 428.6 15.3 358 81-546 18-382 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 1.3E-52 4.5E-57 434.8 19.6 358 83-546 91-463 (479)
14 2v1x_A ATP-dependent DNA helic 100.0 1.8E-50 6.2E-55 423.2 29.1 340 87-538 24-382 (591)
15 2z0m_A 337AA long hypothetical 100.0 2.5E-49 8.6E-54 391.8 28.7 330 91-544 1-336 (337)
16 1oyw_A RECQ helicase, ATP-depe 100.0 2.4E-49 8.3E-54 410.9 29.4 336 85-539 3-352 (523)
17 3fho_A ATP-dependent RNA helic 100.0 5.3E-49 1.8E-53 408.7 19.2 354 85-546 120-487 (508)
18 3oiy_A Reverse gyrase helicase 100.0 9.1E-47 3.1E-51 383.8 30.7 333 94-547 9-382 (414)
19 2zj8_A DNA helicase, putative 100.0 3.7E-45 1.3E-49 396.3 32.9 332 85-532 2-389 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 6.3E-45 2.2E-49 394.8 34.0 342 83-532 7-410 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 5.6E-45 1.9E-49 393.8 27.2 338 85-532 2-390 (702)
22 4a2p_A RIG-I, retinoic acid in 100.0 3E-44 1E-48 380.1 26.3 336 103-533 4-511 (556)
23 3l9o_A ATP-dependent RNA helic 100.0 2.9E-44 1E-48 399.2 24.8 339 83-538 161-606 (1108)
24 3tbk_A RIG-I helicase domain; 100.0 6E-44 2.1E-48 377.8 23.6 339 106-538 4-515 (555)
25 2ykg_A Probable ATP-dependent 100.0 6.6E-44 2.2E-48 387.0 22.8 349 96-538 3-524 (696)
26 1gku_B Reverse gyrase, TOP-RG; 100.0 4.2E-43 1.4E-47 390.3 28.3 329 97-544 48-468 (1054)
27 1tf5_A Preprotein translocase 100.0 1.5E-43 5.1E-48 370.1 22.8 374 101-532 79-547 (844)
28 4a2q_A RIG-I, retinoic acid in 100.0 6.4E-43 2.2E-47 382.4 28.2 339 100-533 242-752 (797)
29 4f92_B U5 small nuclear ribonu 100.0 8.5E-43 2.9E-47 400.2 30.2 349 103-538 76-481 (1724)
30 2xgj_A ATP-dependent RNA helic 100.0 3.5E-42 1.2E-46 379.3 30.8 322 100-538 81-508 (1010)
31 4gl2_A Interferon-induced heli 100.0 2.8E-43 9.4E-48 382.3 21.4 343 106-531 7-520 (699)
32 4ddu_A Reverse gyrase; topoiso 100.0 6.2E-42 2.1E-46 380.4 32.6 332 95-543 67-503 (1104)
33 4f92_B U5 small nuclear ribonu 100.0 2.3E-42 8E-47 396.6 28.0 358 91-548 911-1323(1724)
34 1wp9_A ATP-dependent RNA helic 100.0 9E-42 3.1E-46 355.4 30.0 324 106-534 9-479 (494)
35 4a2w_A RIG-I, retinoic acid in 100.0 3.6E-42 1.2E-46 379.9 24.9 340 99-533 241-752 (936)
36 2fsf_A Preprotein translocase 100.0 8.7E-41 3E-45 348.1 27.2 394 101-532 70-585 (853)
37 4a4z_A Antiviral helicase SKI2 100.0 8E-41 2.7E-45 368.6 26.3 325 101-538 35-502 (997)
38 2whx_A Serine protease/ntpase/ 100.0 4.2E-41 1.4E-45 353.3 18.7 314 89-544 155-495 (618)
39 1gm5_A RECG; helicase, replica 100.0 7.9E-41 2.7E-45 357.1 18.7 316 93-533 356-700 (780)
40 1nkt_A Preprotein translocase 100.0 5.2E-40 1.8E-44 342.5 24.0 379 101-532 107-619 (922)
41 2jlq_A Serine protease subunit 100.0 1.1E-39 3.7E-44 333.1 21.0 287 103-530 1-311 (451)
42 2oca_A DAR protein, ATP-depend 100.0 1.8E-39 6.1E-44 339.1 22.8 311 105-528 112-453 (510)
43 2eyq_A TRCF, transcription-rep 100.0 2.4E-38 8.3E-43 354.0 32.2 317 89-531 586-923 (1151)
44 1yks_A Genome polyprotein [con 100.0 9.4E-40 3.2E-44 331.9 16.2 283 117-542 4-314 (440)
45 2wv9_A Flavivirin protease NS2 100.0 2.5E-40 8.7E-45 349.3 12.2 303 98-543 202-549 (673)
46 2fwr_A DNA repair protein RAD2 100.0 1.5E-38 5E-43 328.9 23.1 298 106-533 93-457 (472)
47 3o8b_A HCV NS3 protease/helica 100.0 1.5E-38 5.1E-43 330.2 18.3 290 106-543 217-531 (666)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-37 4.3E-42 335.1 22.5 337 82-532 70-445 (773)
49 2z83_A Helicase/nucleoside tri 100.0 9.8E-38 3.4E-42 319.1 16.8 284 115-538 15-323 (459)
50 3h1t_A Type I site-specific re 100.0 7E-37 2.4E-41 324.6 20.7 327 106-530 178-558 (590)
51 2v6i_A RNA helicase; membrane, 100.0 2.4E-36 8.2E-41 306.3 22.3 281 120-540 1-304 (431)
52 3dmq_A RNA polymerase-associat 100.0 4.5E-35 1.5E-39 323.7 25.8 136 404-544 488-627 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 1.8E-34 6E-39 303.7 27.4 279 117-539 151-453 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 2E-33 6.9E-38 292.6 27.2 316 106-533 37-456 (500)
55 3jux_A Protein translocase sub 100.0 1.3E-31 4.5E-36 273.3 29.1 386 101-531 71-588 (822)
56 3fe2_A Probable ATP-dependent 100.0 9.8E-33 3.3E-37 258.6 16.6 176 79-270 24-205 (242)
57 3mwy_W Chromo domain-containin 100.0 6E-31 2E-35 286.8 31.5 317 106-532 236-686 (800)
58 2oxc_A Probable ATP-dependent 100.0 4.4E-32 1.5E-36 252.1 15.9 174 76-270 16-196 (230)
59 3fmo_B ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 258.6 19.0 170 82-270 90-265 (300)
60 1z3i_X Similar to RAD54-like; 100.0 2.8E-30 9.7E-35 274.6 30.8 109 423-531 415-529 (644)
61 3ber_A Probable ATP-dependent 100.0 7.6E-32 2.6E-36 253.0 16.4 170 81-270 40-215 (249)
62 3iuy_A Probable ATP-dependent 100.0 5.7E-32 1.9E-36 251.3 15.3 180 75-270 10-196 (228)
63 1vec_A ATP-dependent RNA helic 100.0 2.2E-31 7.7E-36 243.3 17.8 167 84-270 3-175 (206)
64 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-31 4.6E-36 247.0 16.3 169 84-270 4-179 (219)
65 3bor_A Human initiation factor 100.0 1.1E-31 3.6E-36 250.6 15.4 171 78-269 24-201 (237)
66 2pl3_A Probable ATP-dependent 100.0 2.3E-31 7.9E-36 248.5 17.0 174 81-270 22-200 (236)
67 3ly5_A ATP-dependent RNA helic 100.0 1.6E-31 5.3E-36 252.9 14.3 172 83-270 51-230 (262)
68 1qde_A EIF4A, translation init 100.0 5.9E-31 2E-35 243.8 17.9 172 78-270 8-184 (224)
69 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-30 4.4E-35 285.5 21.8 327 92-528 250-707 (1038)
70 1wrb_A DJVLGB; RNA helicase, D 100.0 6.2E-31 2.1E-35 248.3 16.5 176 82-269 21-202 (253)
71 1t6n_A Probable ATP-dependent 100.0 1.5E-30 5E-35 240.4 17.4 172 78-269 8-187 (220)
72 2gxq_A Heat resistant RNA depe 100.0 6.8E-31 2.3E-35 240.3 14.8 165 85-269 2-172 (207)
73 3dkp_A Probable ATP-dependent 100.0 1.9E-30 6.4E-35 243.8 15.6 173 79-269 20-206 (245)
74 1c4o_A DNA nucleotide excision 100.0 1.2E-27 4.2E-32 253.8 26.3 135 404-542 422-562 (664)
75 2hjv_A ATP-dependent RNA helic 100.0 9.3E-28 3.2E-32 209.8 18.9 151 392-547 8-159 (163)
76 2ipc_A Preprotein translocase 100.0 1.6E-26 5.6E-31 240.3 29.8 131 101-254 75-215 (997)
77 2d7d_A Uvrabc system protein B 99.9 4.5E-26 1.5E-30 241.7 26.7 134 404-541 428-567 (661)
78 1fuk_A Eukaryotic initiation f 99.9 7.4E-27 2.5E-31 204.6 16.8 149 393-546 3-153 (165)
79 1t5i_A C_terminal domain of A 99.9 6.2E-27 2.1E-31 206.1 16.2 149 393-546 5-155 (172)
80 2rb4_A ATP-dependent RNA helic 99.9 9.4E-27 3.2E-31 206.0 17.0 150 392-546 6-163 (175)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-26 4.7E-31 206.2 17.0 150 391-544 17-167 (185)
82 2p6n_A ATP-dependent RNA helic 99.9 1.9E-26 6.3E-31 206.2 17.0 149 389-543 25-175 (191)
83 3eaq_A Heat resistant RNA depe 99.9 2.5E-26 8.6E-31 209.4 18.2 147 395-546 7-154 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.8E-25 6.3E-30 213.0 17.2 148 394-546 3-151 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 5.6E-27 1.9E-31 206.3 0.0 149 394-547 4-154 (170)
86 2vl7_A XPD; helicase, unknown 99.9 4.4E-24 1.5E-28 222.3 21.5 116 408-530 370-521 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 2.8E-21 9.5E-26 202.0 26.3 382 106-530 3-531 (551)
88 3b6e_A Interferon-induced heli 99.9 3.8E-22 1.3E-26 183.4 12.1 147 101-262 28-183 (216)
89 1rif_A DAR protein, DNA helica 99.9 3E-21 1E-25 184.7 13.9 134 106-269 113-249 (282)
90 4a15_A XPD helicase, ATP-depen 99.8 6.8E-20 2.3E-24 192.7 22.9 117 408-529 434-583 (620)
91 3llm_A ATP-dependent RNA helic 99.8 1.5E-21 5.2E-26 181.3 7.7 148 91-259 46-195 (235)
92 2fz4_A DNA repair protein RAD2 99.8 9.6E-19 3.3E-23 162.0 14.1 118 105-259 92-210 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.7E-18 5.8E-23 163.1 12.9 128 402-532 93-226 (271)
94 1w36_D RECD, exodeoxyribonucle 98.7 2.7E-08 9.2E-13 104.6 9.2 71 108-193 151-223 (608)
95 3upu_A ATP-dependent DNA helic 98.1 0.0001 3.6E-09 74.7 18.8 70 101-186 20-94 (459)
96 2gk6_A Regulator of nonsense t 98.1 9.1E-06 3.1E-10 85.8 10.6 70 104-189 178-247 (624)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1E-05 3.5E-10 84.1 9.0 63 106-185 189-251 (574)
98 2xzl_A ATP-dependent helicase 98.0 3.5E-05 1.2E-09 83.2 12.4 69 105-189 359-427 (802)
99 4b3f_X DNA-binding protein smu 98.0 1.2E-05 4.3E-10 85.3 8.9 67 106-189 189-256 (646)
100 3lfu_A DNA helicase II; SF1 he 98.0 0.001 3.5E-08 70.8 23.4 72 105-191 8-79 (647)
101 2wjy_A Regulator of nonsense t 97.9 2.2E-05 7.6E-10 84.6 9.4 69 105-189 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 97.8 0.00015 5E-09 68.3 11.7 125 403-534 107-241 (328)
103 2o0j_A Terminase, DNA packagin 97.1 0.0024 8.3E-08 62.2 10.5 72 106-192 163-234 (385)
104 2orw_A Thymidine kinase; TMTK, 96.7 0.0077 2.6E-07 52.4 9.2 39 121-176 3-41 (184)
105 3cpe_A Terminase, DNA packagin 96.6 0.0063 2.2E-07 63.6 10.0 73 106-193 163-235 (592)
106 1xx6_A Thymidine kinase; NESG, 96.6 0.0038 1.3E-07 54.5 7.0 39 121-176 8-46 (191)
107 2j9r_A Thymidine kinase; TK1, 96.6 0.0094 3.2E-07 52.6 9.3 40 121-177 28-67 (214)
108 3ec2_A DNA replication protein 96.6 0.0063 2.1E-07 52.7 8.1 19 120-138 37-55 (180)
109 3vkw_A Replicase large subunit 96.5 0.0042 1.4E-07 61.4 6.7 85 122-253 162-246 (446)
110 1uaa_A REP helicase, protein ( 96.5 0.0052 1.8E-07 65.5 8.1 83 106-203 2-84 (673)
111 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0061 2.1E-07 53.7 6.9 39 121-176 28-66 (219)
112 2kjq_A DNAA-related protein; s 96.1 0.0095 3.3E-07 49.8 6.3 18 120-137 35-52 (149)
113 2b8t_A Thymidine kinase; deoxy 96.0 0.018 6.2E-07 51.5 7.8 39 121-176 12-50 (223)
114 3h4m_A Proteasome-activating n 95.9 0.043 1.5E-06 51.4 10.7 54 82-138 12-68 (285)
115 1pjr_A PCRA; DNA repair, DNA r 95.6 0.027 9.1E-07 60.5 8.7 72 105-191 10-81 (724)
116 3u4q_A ATP-dependent helicase/ 95.5 0.02 6.8E-07 65.3 7.7 72 106-190 10-81 (1232)
117 4b4t_J 26S protease regulatory 95.5 0.14 4.8E-06 49.9 12.4 54 81-137 142-198 (405)
118 2orv_A Thymidine kinase; TP4A 95.5 0.023 7.9E-07 50.6 6.3 39 121-176 19-57 (234)
119 1w4r_A Thymidine kinase; type 95.3 0.034 1.2E-06 48.2 6.7 38 121-175 20-57 (195)
120 4b4t_M 26S protease regulatory 95.2 0.1 3.5E-06 51.6 10.7 58 77-137 171-231 (434)
121 1l8q_A Chromosomal replication 95.1 0.11 3.7E-06 49.7 10.5 18 121-138 37-54 (324)
122 1d2n_A N-ethylmaleimide-sensit 95.1 0.12 4E-06 48.0 10.4 17 122-138 65-81 (272)
123 2z4s_A Chromosomal replication 94.9 0.14 4.7E-06 51.3 10.9 18 121-138 130-147 (440)
124 1a5t_A Delta prime, HOLB; zinc 94.9 0.029 9.9E-07 54.0 5.6 39 107-146 3-48 (334)
125 3te6_A Regulatory protein SIR3 94.8 0.1 3.5E-06 49.4 9.1 27 120-147 44-70 (318)
126 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.16 5.6E-06 46.6 10.3 52 84-138 3-56 (262)
127 3u61_B DNA polymerase accessor 94.7 0.23 7.9E-06 47.3 11.4 15 240-254 104-118 (324)
128 1jbk_A CLPB protein; beta barr 94.6 0.22 7.7E-06 42.8 10.3 18 121-138 43-60 (195)
129 2zpa_A Uncharacterized protein 94.1 0.075 2.6E-06 55.3 6.9 91 106-253 175-267 (671)
130 3eie_A Vacuolar protein sortin 94.1 0.051 1.7E-06 51.9 5.4 55 81-138 12-68 (322)
131 3bos_A Putative DNA replicatio 93.7 0.14 4.6E-06 46.3 7.3 19 120-138 51-69 (242)
132 1gm5_A RECG; helicase, replica 93.6 0.27 9.2E-06 52.7 10.3 77 424-500 417-499 (780)
133 2p65_A Hypothetical protein PF 93.4 0.4 1.4E-05 40.9 9.5 18 121-138 43-60 (187)
134 4b4t_K 26S protease regulatory 93.3 0.3 1E-05 48.2 9.3 56 80-138 165-223 (428)
135 2qp9_X Vacuolar protein sortin 93.0 0.064 2.2E-06 52.0 4.0 54 82-138 46-101 (355)
136 3vfd_A Spastin; ATPase, microt 92.8 0.2 6.9E-06 49.2 7.3 18 121-138 148-165 (389)
137 3pvs_A Replication-associated 92.6 0.18 6.2E-06 50.4 6.7 17 122-138 51-67 (447)
138 2v1u_A Cell division control p 92.6 0.36 1.2E-05 47.0 8.9 19 120-138 43-61 (387)
139 3hjh_A Transcription-repair-co 92.1 0.47 1.6E-05 47.7 9.0 65 424-499 382-446 (483)
140 2qby_B CDC6 homolog 3, cell di 92.0 0.45 1.5E-05 46.4 8.7 18 121-138 45-62 (384)
141 3hu3_A Transitional endoplasmi 91.9 0.46 1.6E-05 48.0 8.8 19 120-138 237-255 (489)
142 1t6n_A Probable ATP-dependent 91.4 2 7E-05 37.8 11.7 75 423-499 81-166 (220)
143 2chg_A Replication factor C sm 90.9 0.58 2E-05 41.2 7.6 17 122-138 39-55 (226)
144 3oiy_A Reverse gyrase helicase 90.9 0.69 2.4E-05 45.6 8.9 79 422-500 62-148 (414)
145 3ber_A Probable ATP-dependent 90.5 2.1 7.2E-05 38.7 11.1 75 422-499 109-194 (249)
146 3d8b_A Fidgetin-like protein 1 90.4 1.9 6.5E-05 41.5 11.3 54 82-138 79-134 (357)
147 2qby_A CDC6 homolog 1, cell di 90.2 1.6 5.4E-05 42.3 10.7 18 121-138 45-62 (386)
148 1fnn_A CDC6P, cell division co 90.0 0.94 3.2E-05 44.1 8.9 16 123-138 46-61 (389)
149 3pfi_A Holliday junction ATP-d 89.9 0.42 1.4E-05 45.7 6.1 17 122-138 56-72 (338)
150 1sxj_E Activator 1 40 kDa subu 89.9 1.9 6.7E-05 41.2 10.9 42 85-138 12-53 (354)
151 1sxj_D Activator 1 41 kDa subu 88.8 1.2 3.9E-05 42.8 8.4 17 122-138 59-75 (353)
152 2gno_A DNA polymerase III, gam 88.7 1.1 3.6E-05 42.2 7.7 18 122-139 19-36 (305)
153 1vec_A ATP-dependent RNA helic 88.3 3.7 0.00012 35.6 10.7 75 422-499 69-154 (206)
154 3co5_A Putative two-component 88.3 0.27 9.1E-06 40.4 2.9 19 119-137 25-43 (143)
155 3n70_A Transport activator; si 88.3 0.31 1.1E-05 40.1 3.3 20 119-138 22-41 (145)
156 1hqc_A RUVB; extended AAA-ATPa 88.3 0.42 1.4E-05 45.3 4.8 18 121-138 38-55 (324)
157 3kl4_A SRP54, signal recogniti 88.2 2.8 9.6E-05 41.3 10.6 18 122-139 98-115 (433)
158 4b4t_I 26S protease regulatory 88.1 0.57 1.9E-05 45.9 5.5 57 78-137 173-232 (437)
159 4ddu_A Reverse gyrase; topoiso 88.1 0.81 2.8E-05 51.3 7.4 79 422-500 119-205 (1104)
160 3cf2_A TER ATPase, transitiona 87.7 1.8 6E-05 46.4 9.4 16 122-137 239-254 (806)
161 3cf0_A Transitional endoplasmi 87.7 0.27 9.1E-06 46.3 2.9 57 81-138 9-66 (301)
162 3fe2_A Probable ATP-dependent 87.7 2.4 8.1E-05 38.1 9.2 74 423-499 101-184 (242)
163 1xti_A Probable ATP-dependent 87.0 4.4 0.00015 39.1 11.5 75 422-498 74-159 (391)
164 2eyq_A TRCF, transcription-rep 87.0 2.5 8.6E-05 47.6 10.6 76 423-498 651-732 (1151)
165 4b4t_L 26S protease subunit RP 86.8 0.41 1.4E-05 47.3 3.7 60 76-138 170-232 (437)
166 4b4t_H 26S protease regulatory 86.7 0.28 9.6E-06 48.6 2.4 55 81-138 203-260 (467)
167 1e9r_A Conjugal transfer prote 86.5 0.58 2E-05 46.7 4.7 44 120-180 52-95 (437)
168 3cmu_A Protein RECA, recombina 86.3 0.88 3E-05 53.5 6.5 41 120-177 1426-1466(2050)
169 2hjv_A ATP-dependent RNA helic 86.0 3.2 0.00011 34.6 8.5 67 166-249 35-111 (163)
170 3bor_A Human initiation factor 85.4 3.7 0.00013 36.7 9.2 75 422-499 96-181 (237)
171 1iqp_A RFCS; clamp loader, ext 85.4 0.91 3.1E-05 42.9 5.4 16 123-138 48-63 (327)
172 2oxc_A Probable ATP-dependent 85.4 4 0.00014 36.2 9.4 73 422-498 90-173 (230)
173 1xwi_A SKD1 protein; VPS4B, AA 85.1 0.36 1.2E-05 45.9 2.3 54 82-138 7-62 (322)
174 3jvv_A Twitching mobility prot 85.1 0.9 3.1E-05 43.7 5.1 39 81-137 101-139 (356)
175 2qgz_A Helicase loader, putati 85.1 0.9 3.1E-05 42.8 5.0 26 121-147 152-177 (308)
176 2pl3_A Probable ATP-dependent 84.9 3.6 0.00012 36.6 8.9 73 423-499 96-179 (236)
177 3io5_A Recombination and repai 84.6 1.5 5.2E-05 41.1 6.1 96 120-254 28-124 (333)
178 3hr8_A Protein RECA; alpha and 84.3 1.4 4.9E-05 42.2 6.1 42 119-177 59-100 (356)
179 2w58_A DNAI, primosome compone 84.2 1.1 3.6E-05 39.1 4.8 17 122-138 55-71 (202)
180 1qde_A EIF4A, translation init 83.7 3.6 0.00012 36.3 8.2 74 422-499 80-163 (224)
181 2x8a_A Nuclear valosin-contain 83.7 0.3 1E-05 45.3 0.9 53 82-137 5-60 (274)
182 2gxq_A Heat resistant RNA depe 83.5 4.5 0.00015 35.0 8.7 74 423-499 71-152 (207)
183 1fuk_A Eukaryotic initiation f 83.4 5.5 0.00019 33.1 8.9 66 166-248 30-105 (165)
184 1p9r_A General secretion pathw 83.1 1.5 5.1E-05 43.2 5.8 18 120-137 166-183 (418)
185 3iuy_A Probable ATP-dependent 83.0 3 0.0001 37.0 7.4 74 423-499 93-175 (228)
186 2p6n_A ATP-dependent RNA helic 83.0 5.4 0.00018 34.3 8.8 65 166-247 54-128 (191)
187 2zts_A Putative uncharacterize 82.8 1.6 5.4E-05 39.3 5.5 30 120-149 29-58 (251)
188 3ly5_A ATP-dependent RNA helic 82.5 8.5 0.00029 34.9 10.5 74 423-499 125-209 (262)
189 2v1x_A ATP-dependent DNA helic 81.5 3.3 0.00011 42.9 8.0 58 424-481 84-144 (591)
190 1oyw_A RECQ helicase, ATP-depe 81.3 3.8 0.00013 41.7 8.3 58 424-481 65-123 (523)
191 3gk5_A Uncharacterized rhodane 81.2 2.6 8.8E-05 32.4 5.4 38 422-459 53-90 (108)
192 1qvr_A CLPB protein; coiled co 81.0 0.74 2.5E-05 50.3 3.0 16 123-138 590-605 (854)
193 1w5s_A Origin recognition comp 80.8 4.3 0.00015 39.6 8.3 18 121-138 50-69 (412)
194 3b9p_A CG5977-PA, isoform A; A 80.4 0.76 2.6E-05 42.9 2.5 54 82-138 16-71 (297)
195 2oap_1 GSPE-2, type II secreti 79.6 1.6 5.6E-05 44.2 4.8 38 98-137 238-276 (511)
196 1lv7_A FTSH; alpha/beta domain 79.6 0.79 2.7E-05 41.8 2.3 54 82-138 7-62 (257)
197 1ixz_A ATP-dependent metallopr 79.0 0.9 3.1E-05 41.3 2.4 53 82-137 11-65 (254)
198 4ag6_A VIRB4 ATPase, type IV s 78.2 2.4 8.2E-05 41.4 5.4 41 120-177 34-74 (392)
199 1r6b_X CLPA protein; AAA+, N-t 77.9 1.6 5.5E-05 46.9 4.4 16 123-138 490-505 (758)
200 1s2m_A Putative ATP-dependent 77.8 15 0.0005 35.5 11.1 74 423-499 88-171 (400)
201 2dr3_A UPF0273 protein PH0284; 77.8 2.6 8.8E-05 37.8 5.2 52 118-187 20-71 (247)
202 1wp9_A ATP-dependent RNA helic 77.4 9.5 0.00032 37.8 9.9 73 423-499 51-133 (494)
203 2w0m_A SSO2452; RECA, SSPF, un 77.3 3.5 0.00012 36.5 5.9 21 118-138 20-40 (235)
204 2j0s_A ATP-dependent RNA helic 77.3 12 0.00043 36.2 10.4 74 422-498 103-186 (410)
205 1fuu_A Yeast initiation factor 77.2 13 0.00045 35.7 10.6 74 422-499 87-170 (394)
206 1wrb_A DJVLGB; RNA helicase, D 77.2 8.7 0.0003 34.5 8.6 73 424-499 100-182 (253)
207 2jgn_A DBX, DDX3, ATP-dependen 77.1 4.6 0.00016 34.5 6.3 65 166-247 46-120 (185)
208 1qvr_A CLPB protein; coiled co 76.8 6.6 0.00023 42.7 8.9 18 121-138 191-208 (854)
209 3dkp_A Probable ATP-dependent 76.6 4.3 0.00015 36.4 6.3 75 422-499 96-183 (245)
210 3nwn_A Kinesin-like protein KI 76.6 1.2 3.9E-05 42.9 2.5 25 114-138 96-122 (359)
211 1q0u_A Bstdead; DEAD protein, 76.5 5.8 0.0002 34.7 7.1 74 422-498 70-157 (219)
212 1gku_B Reverse gyrase, TOP-RG; 76.5 5.6 0.00019 44.4 8.3 76 423-499 98-183 (1054)
213 2eyu_A Twitching motility prot 76.4 1.3 4.5E-05 40.5 2.8 20 118-137 22-41 (261)
214 1t5i_A C_terminal domain of A 76.3 9.1 0.00031 32.1 7.9 49 166-221 31-89 (172)
215 3b85_A Phosphate starvation-in 76.1 1.9 6.5E-05 37.8 3.6 32 107-138 8-39 (208)
216 2bjv_A PSP operon transcriptio 76.0 1.7 5.9E-05 39.7 3.5 18 120-137 28-45 (265)
217 3iij_A Coilin-interacting nucl 76.0 1.8 6.2E-05 36.7 3.4 20 119-138 9-28 (180)
218 2db3_A ATP-dependent RNA helic 75.8 14 0.00047 36.5 10.3 73 423-498 128-210 (434)
219 2l82_A Designed protein OR32; 75.6 12 0.00041 27.9 7.1 50 427-476 5-55 (162)
220 1iy2_A ATP-dependent metallopr 75.4 1.3 4.3E-05 41.0 2.4 53 82-137 35-89 (278)
221 3cf2_A TER ATPase, transitiona 75.1 3 0.0001 44.7 5.3 58 79-137 469-527 (806)
222 1f9v_A Kinesin-like protein KA 74.8 1.9 6.5E-05 41.1 3.5 25 114-138 76-102 (347)
223 3bh0_A DNAB-like replicative h 74.8 4.2 0.00014 38.3 5.9 24 116-139 63-86 (315)
224 3syl_A Protein CBBX; photosynt 74.7 1.5 5.3E-05 41.0 2.8 18 121-138 67-84 (309)
225 1u0j_A DNA replication protein 74.7 4 0.00014 37.2 5.4 43 94-139 74-122 (267)
226 2zan_A Vacuolar protein sortin 74.5 1.3 4.4E-05 44.2 2.3 55 81-138 128-184 (444)
227 1kgd_A CASK, peripheral plasma 74.3 1.9 6.7E-05 36.7 3.1 18 120-137 4-21 (180)
228 3t0q_A AGR253WP; kinesin, alph 74.2 1.9 6.4E-05 41.3 3.2 25 114-138 77-103 (349)
229 2rb4_A ATP-dependent RNA helic 74.2 6.2 0.00021 33.2 6.3 65 166-247 34-108 (175)
230 2qmh_A HPR kinase/phosphorylas 74.2 1.6 5.6E-05 37.8 2.5 18 120-137 33-50 (205)
231 1bg2_A Kinesin; motor protein, 74.0 1.5 5.2E-05 41.4 2.5 24 115-138 70-95 (325)
232 3eaq_A Heat resistant RNA depe 73.8 8.6 0.0003 33.6 7.4 65 166-247 31-105 (212)
233 3u4q_B ATP-dependent helicase/ 73.6 2.2 7.6E-05 48.3 4.2 40 124-177 4-43 (1166)
234 2ffh_A Protein (FFH); SRP54, s 73.6 13 0.00043 36.6 9.1 19 121-139 98-116 (425)
235 3vaa_A Shikimate kinase, SK; s 73.5 2 6.8E-05 37.3 3.1 19 120-138 24-42 (199)
236 2px0_A Flagellar biosynthesis 73.5 3.6 0.00012 38.3 5.0 20 120-139 104-123 (296)
237 1goj_A Kinesin, kinesin heavy 73.4 1.7 5.9E-05 41.6 2.8 24 115-138 73-98 (355)
238 4a1f_A DNAB helicase, replicat 73.1 5.5 0.00019 37.8 6.2 24 116-139 41-64 (338)
239 3a8t_A Adenylate isopentenyltr 72.9 1.7 5.8E-05 41.2 2.6 17 122-138 41-57 (339)
240 3lre_A Kinesin-like protein KI 72.9 1.8 6.1E-05 41.5 2.8 24 115-138 98-123 (355)
241 3nbx_X ATPase RAVA; AAA+ ATPas 72.8 2.8 9.6E-05 42.3 4.3 28 110-137 30-57 (500)
242 3b6u_A Kinesin-like protein KI 72.6 1.7 5.7E-05 41.9 2.5 24 115-138 94-119 (372)
243 1v8k_A Kinesin-like protein KI 72.5 1.7 5.8E-05 42.4 2.5 24 115-138 147-172 (410)
244 2gza_A Type IV secretion syste 72.5 1.9 6.5E-05 41.6 2.9 20 118-137 172-191 (361)
245 3bgw_A DNAB-like replicative h 72.4 5.3 0.00018 39.6 6.2 28 116-143 192-219 (444)
246 2vvg_A Kinesin-2; motor protei 72.4 1.7 5.9E-05 41.5 2.5 23 116-138 83-107 (350)
247 3dc4_A Kinesin-like protein NO 72.3 1.5 5.1E-05 41.8 2.0 24 115-138 87-112 (344)
248 2y65_A Kinesin, kinesin heavy 72.2 1.7 5.9E-05 41.7 2.5 24 115-138 77-102 (365)
249 2ehv_A Hypothetical protein PH 71.8 5.1 0.00017 35.9 5.5 23 117-139 26-48 (251)
250 1qhx_A CPT, protein (chloramph 71.8 1.9 6.5E-05 36.5 2.5 18 121-138 3-20 (178)
251 4a14_A Kinesin, kinesin-like p 71.7 1.8 6.2E-05 41.3 2.5 24 115-138 76-101 (344)
252 2h58_A Kinesin-like protein KI 71.6 1.8 6.3E-05 40.9 2.5 25 114-138 72-98 (330)
253 1t5c_A CENP-E protein, centrom 71.5 1.9 6.3E-05 41.3 2.5 24 115-138 70-95 (349)
254 3gbj_A KIF13B protein; kinesin 71.4 1.8 6.3E-05 41.4 2.5 25 114-138 84-110 (354)
255 1ojl_A Transcriptional regulat 71.4 2.4 8.3E-05 39.7 3.3 19 120-138 24-42 (304)
256 2c9o_A RUVB-like 1; hexameric 71.4 5 0.00017 40.0 5.8 47 84-138 34-80 (456)
257 2nr8_A Kinesin-like protein KI 71.4 1.9 6.4E-05 41.4 2.5 25 114-138 95-121 (358)
258 3tau_A Guanylate kinase, GMP k 71.4 2.4 8.2E-05 37.1 3.1 18 120-137 7-24 (208)
259 3hws_A ATP-dependent CLP prote 71.3 1.8 6.3E-05 41.7 2.5 19 120-138 50-68 (363)
260 2zfi_A Kinesin-like protein KI 71.3 1.9 6.4E-05 41.5 2.5 25 114-138 81-107 (366)
261 3g5j_A Putative ATP/GTP bindin 71.3 6.6 0.00023 31.1 5.6 35 425-459 90-125 (134)
262 3bfn_A Kinesin-like protein KI 71.2 1.8 6.3E-05 41.8 2.4 23 116-138 92-116 (388)
263 2r44_A Uncharacterized protein 71.1 1.2 4.3E-05 42.2 1.2 23 116-138 41-63 (331)
264 2r8r_A Sensor protein; KDPD, P 71.0 4.8 0.00016 35.6 4.9 25 123-148 8-32 (228)
265 3trf_A Shikimate kinase, SK; a 71.0 2.4 8.2E-05 36.1 3.0 18 121-138 5-22 (185)
266 1x88_A Kinesin-like protein KI 70.7 1.8 6.2E-05 41.5 2.2 25 114-138 80-106 (359)
267 2q6t_A DNAB replication FORK h 70.7 6.9 0.00024 38.8 6.6 30 116-146 195-224 (444)
268 4etp_A Kinesin-like protein KA 70.7 2 6.9E-05 41.9 2.6 25 114-138 132-158 (403)
269 3exa_A TRNA delta(2)-isopenten 70.6 2.1 7.1E-05 40.1 2.6 16 122-137 4-19 (322)
270 2qor_A Guanylate kinase; phosp 70.4 2.9 0.0001 36.3 3.4 20 118-137 9-28 (204)
271 2cvh_A DNA repair and recombin 70.3 4.1 0.00014 35.6 4.5 24 118-141 17-40 (220)
272 1tue_A Replication protein E1; 70.3 3 0.0001 36.4 3.3 50 94-146 29-82 (212)
273 3flh_A Uncharacterized protein 70.3 4.8 0.00016 31.7 4.4 38 422-459 69-108 (124)
274 2heh_A KIF2C protein; kinesin, 70.2 1.9 6.5E-05 41.7 2.2 24 115-138 127-152 (387)
275 2j41_A Guanylate kinase; GMP, 70.2 2.7 9.3E-05 36.5 3.2 19 119-137 4-22 (207)
276 3foz_A TRNA delta(2)-isopenten 70.1 2.4 8E-05 39.6 2.8 16 123-138 12-27 (316)
277 1ofh_A ATP-dependent HSL prote 70.1 2.1 7.2E-05 40.0 2.6 18 121-138 50-67 (310)
278 3foj_A Uncharacterized protein 70.1 3.8 0.00013 30.8 3.6 37 422-458 54-90 (100)
279 2rep_A Kinesin-like protein KI 70.0 2.5 8.7E-05 40.7 3.1 25 114-138 107-133 (376)
280 1wv9_A Rhodanese homolog TT165 70.0 5 0.00017 29.7 4.2 35 425-459 54-88 (94)
281 1lvg_A Guanylate kinase, GMP k 69.9 2.7 9.2E-05 36.5 3.0 18 120-137 3-20 (198)
282 1zp6_A Hypothetical protein AT 69.8 2.3 8E-05 36.4 2.6 20 118-137 6-25 (191)
283 2r6a_A DNAB helicase, replicat 69.8 7.5 0.00026 38.7 6.7 30 116-146 198-227 (454)
284 2ce7_A Cell division protein F 69.5 2.4 8.3E-05 42.4 2.9 53 83-138 12-66 (476)
285 2wbe_C Bipolar kinesin KRP-130 69.2 1.9 6.5E-05 41.6 2.0 24 115-138 93-118 (373)
286 2ewv_A Twitching motility prot 69.2 2.3 7.7E-05 41.2 2.6 20 118-137 133-152 (372)
287 3cob_A Kinesin heavy chain-lik 69.0 1.9 6.4E-05 41.5 1.9 25 114-138 71-97 (369)
288 3dm5_A SRP54, signal recogniti 69.0 6.9 0.00024 38.6 6.0 17 122-138 101-117 (443)
289 3tr0_A Guanylate kinase, GMP k 68.7 3 0.0001 36.1 3.1 18 120-137 6-23 (205)
290 1cr0_A DNA primase/helicase; R 68.6 7.3 0.00025 36.1 6.0 22 117-138 31-52 (296)
291 3eme_A Rhodanese-like domain p 68.6 3.7 0.00013 31.0 3.3 37 422-458 54-90 (103)
292 3fmo_B ATP-dependent RNA helic 68.6 13 0.00046 34.4 7.8 72 422-499 160-243 (300)
293 3lw7_A Adenylate kinase relate 68.4 2.2 7.4E-05 35.8 2.1 16 123-138 3-18 (179)
294 3u06_A Protein claret segregat 68.3 2.1 7.3E-05 41.8 2.2 25 114-138 130-156 (412)
295 2owm_A Nckin3-434, related to 68.2 2.3 8E-05 42.0 2.5 24 115-138 129-154 (443)
296 3uk6_A RUVB-like 2; hexameric 68.2 2.1 7.3E-05 41.2 2.2 18 121-138 70-87 (368)
297 2ze6_A Isopentenyl transferase 68.1 2.7 9.3E-05 38.1 2.8 16 123-138 3-18 (253)
298 1y63_A LMAJ004144AAA protein; 68.0 3.1 0.00011 35.4 3.0 19 120-138 9-27 (184)
299 3ney_A 55 kDa erythrocyte memb 68.0 3.4 0.00012 35.8 3.2 18 120-137 18-35 (197)
300 1kag_A SKI, shikimate kinase I 67.1 3.6 0.00012 34.5 3.2 17 121-137 4-20 (173)
301 2i4i_A ATP-dependent RNA helic 67.1 22 0.00076 34.4 9.5 71 425-498 102-182 (417)
302 1kht_A Adenylate kinase; phosp 67.1 2.5 8.7E-05 36.0 2.3 18 121-138 3-20 (192)
303 2pt7_A CAG-ALFA; ATPase, prote 66.8 2.6 9E-05 40.0 2.5 19 119-137 169-187 (330)
304 3t15_A Ribulose bisphosphate c 66.7 2.6 8.8E-05 39.3 2.4 17 122-138 37-53 (293)
305 3iwh_A Rhodanese-like domain p 66.7 4.4 0.00015 30.8 3.3 37 422-458 54-90 (103)
306 1gmx_A GLPE protein; transfera 66.6 7.9 0.00027 29.4 4.8 38 422-459 56-94 (108)
307 3cmw_A Protein RECA, recombina 66.6 6.3 0.00022 45.8 5.9 89 122-255 1432-1523(1706)
308 1ry6_A Internal kinesin; kines 66.5 2.4 8.2E-05 40.6 2.1 19 120-138 82-102 (360)
309 4gp7_A Metallophosphoesterase; 65.9 2.4 8.1E-05 35.8 1.8 19 120-138 8-26 (171)
310 1um8_A ATP-dependent CLP prote 65.3 2.9 9.8E-05 40.5 2.5 18 121-138 72-89 (376)
311 3crm_A TRNA delta(2)-isopenten 65.1 3.4 0.00012 38.9 2.8 16 123-138 7-22 (323)
312 3b9q_A Chloroplast SRP recepto 65.0 7.2 0.00025 36.4 5.1 19 120-138 99-117 (302)
313 1ex7_A Guanylate kinase; subst 64.9 4.2 0.00014 34.8 3.2 15 122-136 2-16 (186)
314 1rj9_A FTSY, signal recognitio 64.8 7.5 0.00026 36.3 5.1 18 121-138 102-119 (304)
315 1sxj_A Activator 1 95 kDa subu 64.6 8.6 0.00029 39.0 6.0 17 122-138 78-94 (516)
316 3eiq_A Eukaryotic initiation f 64.6 35 0.0012 32.9 10.4 90 406-498 90-190 (414)
317 3hix_A ALR3790 protein; rhodan 64.5 7 0.00024 29.7 4.1 37 422-458 50-87 (106)
318 4a2q_A RIG-I, retinoic acid in 64.3 15 0.00052 39.5 8.2 72 424-498 296-378 (797)
319 2zr9_A Protein RECA, recombina 64.1 7.6 0.00026 37.1 5.1 25 118-142 58-82 (349)
320 3a00_A Guanylate kinase, GMP k 64.0 4.3 0.00015 34.6 3.1 16 122-137 2-17 (186)
321 2ius_A DNA translocase FTSK; n 63.8 7.8 0.00027 39.1 5.3 20 120-139 166-185 (512)
322 1z6g_A Guanylate kinase; struc 63.6 4.6 0.00016 35.6 3.3 18 120-137 22-39 (218)
323 1g5t_A COB(I)alamin adenosyltr 63.5 9.5 0.00032 32.9 5.1 36 121-173 28-63 (196)
324 1knq_A Gluconate kinase; ALFA/ 63.4 2.8 9.7E-05 35.3 1.8 18 121-138 8-25 (175)
325 2r2a_A Uncharacterized protein 63.2 4.6 0.00016 35.0 3.1 16 123-138 7-22 (199)
326 3d3q_A TRNA delta(2)-isopenten 63.0 3.9 0.00013 38.8 2.8 16 123-138 9-24 (340)
327 3cm0_A Adenylate kinase; ATP-b 62.9 3.2 0.00011 35.3 2.0 18 121-138 4-21 (186)
328 1ly1_A Polynucleotide kinase; 62.8 3.2 0.00011 35.0 2.1 16 123-138 4-19 (181)
329 3tbk_A RIG-I helicase domain; 62.8 14 0.00046 37.6 7.2 72 424-498 52-134 (555)
330 2r62_A Cell division protease 62.7 1.8 6.2E-05 39.6 0.5 18 121-138 44-61 (268)
331 4eun_A Thermoresistant glucoki 62.7 4.6 0.00016 34.9 3.1 19 120-138 28-46 (200)
332 1u94_A RECA protein, recombina 62.4 8.6 0.00029 36.8 5.1 40 119-175 61-100 (356)
333 3kb2_A SPBC2 prophage-derived 62.4 4.2 0.00014 33.9 2.7 16 123-138 3-18 (173)
334 1xjc_A MOBB protein homolog; s 62.1 10 0.00035 31.8 5.0 23 123-146 6-28 (169)
335 1vma_A Cell division protein F 62.1 8 0.00027 36.1 4.8 18 121-138 104-121 (306)
336 4fcw_A Chaperone protein CLPB; 62.0 3 0.0001 39.0 1.9 17 122-138 48-64 (311)
337 1w36_B RECB, exodeoxyribonucle 61.7 9.2 0.00031 43.3 6.1 63 123-190 18-80 (1180)
338 4a2p_A RIG-I, retinoic acid in 61.7 19 0.00066 36.5 8.1 73 424-499 55-138 (556)
339 1tq1_A AT5G66040, senescence-a 61.6 7.7 0.00026 30.7 4.0 38 422-459 80-118 (129)
340 1hv8_A Putative ATP-dependent 61.5 32 0.0011 32.4 9.3 73 423-499 73-155 (367)
341 2qt1_A Nicotinamide riboside k 61.1 4.1 0.00014 35.4 2.5 22 116-137 16-37 (207)
342 3eph_A TRNA isopentenyltransfe 60.5 4.4 0.00015 39.4 2.7 16 123-138 4-19 (409)
343 1xp8_A RECA protein, recombina 60.4 9.6 0.00033 36.6 5.1 40 119-175 72-111 (366)
344 2yvu_A Probable adenylyl-sulfa 60.2 9.8 0.00034 32.2 4.8 19 120-138 12-30 (186)
345 1g8p_A Magnesium-chelatase 38 60.1 2.6 8.8E-05 40.2 1.1 18 121-138 45-62 (350)
346 2iut_A DNA translocase FTSK; n 60.1 9.9 0.00034 38.8 5.3 23 122-144 215-237 (574)
347 2v54_A DTMP kinase, thymidylat 59.8 5.7 0.0002 34.2 3.2 19 120-138 3-21 (204)
348 3lnc_A Guanylate kinase, GMP k 59.6 4.2 0.00014 36.1 2.3 19 119-137 25-43 (231)
349 3f9v_A Minichromosome maintena 59.5 5.2 0.00018 41.4 3.3 15 123-137 329-343 (595)
350 1zu4_A FTSY; GTPase, signal re 59.4 9.3 0.00032 35.9 4.8 19 121-139 105-123 (320)
351 1znw_A Guanylate kinase, GMP k 59.3 5.6 0.00019 34.6 3.1 21 117-137 16-36 (207)
352 3vkg_A Dynein heavy chain, cyt 59.3 7.4 0.00025 48.2 4.9 48 91-139 873-924 (3245)
353 1tev_A UMP-CMP kinase; ploop, 59.3 3.6 0.00012 35.2 1.8 18 121-138 3-20 (196)
354 2og2_A Putative signal recogni 59.2 9.7 0.00033 36.4 4.9 18 121-138 157-174 (359)
355 1zuh_A Shikimate kinase; alpha 59.0 5.4 0.00019 33.2 2.8 17 122-138 8-24 (168)
356 1ypw_A Transitional endoplasmi 58.8 4.4 0.00015 43.8 2.6 56 80-137 470-527 (806)
357 2rhm_A Putative kinase; P-loop 58.8 4 0.00014 34.8 2.0 18 121-138 5-22 (193)
358 3e70_C DPA, signal recognition 58.4 10 0.00035 35.8 4.9 17 121-137 129-145 (328)
359 3b6e_A Interferon-induced heli 58.3 7.5 0.00026 33.7 3.7 74 423-499 81-170 (216)
360 3uie_A Adenylyl-sulfate kinase 58.2 5.1 0.00017 34.6 2.6 19 120-138 24-42 (200)
361 3nwj_A ATSK2; P loop, shikimat 58.1 6 0.00021 35.7 3.1 19 120-138 47-65 (250)
362 1s96_A Guanylate kinase, GMP k 57.5 6.4 0.00022 34.7 3.1 19 119-137 14-32 (219)
363 3t61_A Gluconokinase; PSI-biol 57.4 5.8 0.0002 34.3 2.8 17 122-138 19-35 (202)
364 2jtq_A Phage shock protein E; 57.3 19 0.00066 25.7 5.3 36 422-458 39-75 (85)
365 2yhs_A FTSY, cell division pro 57.3 11 0.00038 37.7 5.0 18 121-138 293-310 (503)
366 2c95_A Adenylate kinase 1; tra 57.2 6.2 0.00021 33.7 2.9 19 120-138 8-26 (196)
367 1via_A Shikimate kinase; struc 57.0 6.6 0.00023 32.9 3.0 16 123-138 6-21 (175)
368 3i32_A Heat resistant RNA depe 56.7 21 0.00072 33.1 6.6 65 166-247 28-102 (300)
369 1m7g_A Adenylylsulfate kinase; 56.7 6.5 0.00022 34.3 3.0 20 119-138 23-42 (211)
370 2fsx_A RV0390, COG0607: rhodan 56.6 11 0.00039 30.6 4.3 37 423-459 79-116 (148)
371 2q5c_A NTRC family transcripti 56.5 81 0.0028 26.9 10.0 112 424-545 4-119 (196)
372 1n0w_A DNA repair protein RAD5 56.4 6.6 0.00023 34.9 3.1 23 118-140 21-43 (243)
373 2z43_A DNA repair and recombin 56.4 11 0.00036 35.6 4.6 22 119-140 105-126 (324)
374 3tif_A Uncharacterized ABC tra 56.3 4.9 0.00017 35.9 2.2 17 120-136 30-46 (235)
375 1njg_A DNA polymerase III subu 56.3 4.5 0.00015 35.8 1.9 17 122-138 46-62 (250)
376 1zd8_A GTP:AMP phosphotransfer 56.2 6.4 0.00022 34.8 2.9 18 121-138 7-24 (227)
377 2k0z_A Uncharacterized protein 56.2 15 0.00052 28.0 4.8 38 422-459 54-91 (110)
378 1in4_A RUVB, holliday junction 56.1 6.3 0.00022 37.4 3.0 17 122-138 52-68 (334)
379 3nhv_A BH2092 protein; alpha-b 56.0 9.1 0.00031 31.1 3.6 37 423-459 71-109 (144)
380 1gvn_B Zeta; postsegregational 56.0 4.8 0.00016 37.3 2.1 18 121-138 33-50 (287)
381 1nlf_A Regulatory protein REPA 55.6 6.3 0.00022 36.2 2.9 27 115-141 24-50 (279)
382 1yks_A Genome polyprotein [con 55.5 17 0.00059 35.9 6.2 49 166-221 177-231 (440)
383 1f2t_A RAD50 ABC-ATPase; DNA d 55.4 5.4 0.00018 32.7 2.1 15 123-137 25-39 (149)
384 1qxn_A SUD, sulfide dehydrogen 55.3 9.3 0.00032 30.7 3.5 37 422-458 80-117 (137)
385 1aky_A Adenylate kinase; ATP:A 55.3 7.2 0.00024 34.2 3.1 18 121-138 4-21 (220)
386 2dhr_A FTSH; AAA+ protein, hex 55.2 4.1 0.00014 41.0 1.6 50 83-137 27-80 (499)
387 2pez_A Bifunctional 3'-phospho 55.1 4.9 0.00017 33.9 1.9 19 120-138 4-22 (179)
388 1zak_A Adenylate kinase; ATP:A 55.0 7.9 0.00027 34.0 3.3 18 121-138 5-22 (222)
389 2bdt_A BH3686; alpha-beta prot 54.9 6.8 0.00023 33.3 2.8 16 123-138 4-19 (189)
390 1ye8_A Protein THEP1, hypothet 54.8 7 0.00024 33.1 2.8 15 123-137 2-16 (178)
391 3fb4_A Adenylate kinase; psych 54.6 6.8 0.00023 34.2 2.8 16 123-138 2-17 (216)
392 2iyv_A Shikimate kinase, SK; t 54.5 8.1 0.00028 32.7 3.2 17 122-138 3-19 (184)
393 2d7d_A Uvrabc system protein B 54.4 29 0.001 36.3 8.0 70 166-252 445-524 (661)
394 4akg_A Glutathione S-transfera 54.4 9.5 0.00032 46.7 4.7 48 91-139 890-941 (2695)
395 1ak2_A Adenylate kinase isoenz 54.3 7.7 0.00026 34.4 3.1 18 121-138 16-33 (233)
396 3c8u_A Fructokinase; YP_612366 54.3 6.4 0.00022 34.2 2.5 18 120-137 21-38 (208)
397 4a74_A DNA repair and recombin 54.2 6.2 0.00021 34.8 2.5 20 118-137 22-41 (231)
398 2fsf_A Preprotein translocase 54.0 21 0.00073 38.1 6.7 70 423-497 114-200 (853)
399 2hhg_A Hypothetical protein RP 53.9 9.8 0.00033 30.5 3.4 37 423-459 85-122 (139)
400 3dl0_A Adenylate kinase; phosp 53.8 7.2 0.00024 34.1 2.8 16 123-138 2-17 (216)
401 2i3b_A HCR-ntpase, human cance 53.8 8.5 0.00029 33.0 3.2 18 121-138 1-18 (189)
402 1e6c_A Shikimate kinase; phosp 53.6 8.1 0.00028 32.1 3.0 17 122-138 3-19 (173)
403 3kta_A Chromosome segregation 53.2 5.9 0.0002 33.5 2.1 15 123-137 28-42 (182)
404 2cbz_A Multidrug resistance-as 53.2 5.9 0.0002 35.4 2.2 17 120-136 30-46 (237)
405 1g41_A Heat shock protein HSLU 53.2 6 0.00021 39.1 2.3 18 121-138 50-67 (444)
406 2chq_A Replication factor C sm 53.1 22 0.00076 32.9 6.4 16 123-138 40-55 (319)
407 2cdn_A Adenylate kinase; phosp 52.8 9 0.00031 33.0 3.2 18 121-138 20-37 (201)
408 2v9p_A Replication protein E1; 52.8 8.1 0.00028 36.0 3.1 19 119-137 124-142 (305)
409 1qf9_A UMP/CMP kinase, protein 52.5 7.8 0.00027 32.9 2.8 16 123-138 8-23 (194)
410 3asz_A Uridine kinase; cytidin 52.3 7.1 0.00024 33.9 2.5 17 121-137 6-22 (211)
411 2wwf_A Thymidilate kinase, put 52.3 8.8 0.0003 33.2 3.2 20 119-138 8-27 (212)
412 1nks_A Adenylate kinase; therm 52.3 7.8 0.00027 32.9 2.8 16 123-138 3-18 (194)
413 2v3c_C SRP54, signal recogniti 52.2 13 0.00044 36.7 4.6 18 122-139 100-117 (432)
414 2plr_A DTMP kinase, probable t 52.1 7.5 0.00025 33.7 2.6 19 120-138 3-21 (213)
415 2pt5_A Shikimate kinase, SK; a 52.1 6.4 0.00022 32.6 2.1 16 123-138 2-17 (168)
416 2z0m_A 337AA long hypothetical 51.9 32 0.0011 31.9 7.4 71 424-498 56-136 (337)
417 2bwj_A Adenylate kinase 5; pho 51.8 8.3 0.00029 32.9 2.9 18 121-138 12-29 (199)
418 1cke_A CK, MSSA, protein (cyti 51.7 7.9 0.00027 34.0 2.8 17 122-138 6-22 (227)
419 3pxg_A Negative regulator of g 51.6 6.4 0.00022 39.4 2.3 18 121-138 201-218 (468)
420 1sgw_A Putative ABC transporte 51.5 7.6 0.00026 34.1 2.5 18 120-137 34-51 (214)
421 1tf5_A Preprotein translocase 51.4 35 0.0012 36.5 7.9 70 423-497 123-209 (844)
422 3e4c_A Caspase-1; zymogen, inf 51.4 35 0.0012 31.6 7.1 46 425-471 61-117 (302)
423 1c4o_A DNA nucleotide excision 51.3 32 0.0011 36.1 7.7 70 166-252 439-518 (664)
424 1ukz_A Uridylate kinase; trans 51.2 6.6 0.00022 33.9 2.1 17 122-138 16-32 (203)
425 1rz3_A Hypothetical protein rb 51.2 19 0.00065 30.9 5.1 18 121-138 22-39 (201)
426 2pcj_A ABC transporter, lipopr 51.2 6.4 0.00022 34.9 2.0 17 120-136 29-45 (224)
427 2vli_A Antibiotic resistance p 51.1 5.6 0.00019 33.6 1.6 18 121-138 5-22 (183)
428 3ilm_A ALR3790 protein; rhodan 50.7 15 0.0005 29.7 4.0 37 422-458 54-91 (141)
429 3be4_A Adenylate kinase; malar 50.5 9.1 0.00031 33.5 2.9 18 121-138 5-22 (217)
430 1c9k_A COBU, adenosylcobinamid 50.5 11 0.00038 31.9 3.3 14 124-137 2-15 (180)
431 3umf_A Adenylate kinase; rossm 50.4 8.7 0.0003 33.8 2.7 18 121-138 29-46 (217)
432 2pze_A Cystic fibrosis transme 50.3 6.7 0.00023 34.8 2.0 17 120-136 33-49 (229)
433 1htw_A HI0065; nucleotide-bind 49.9 6.5 0.00022 32.6 1.7 18 119-136 31-48 (158)
434 1q57_A DNA primase/helicase; d 49.7 12 0.00042 37.7 4.2 23 117-139 238-260 (503)
435 4h1g_A Maltose binding protein 49.7 6.9 0.00024 41.6 2.3 25 114-138 454-480 (715)
436 1jjv_A Dephospho-COA kinase; P 49.7 9.1 0.00031 33.1 2.8 16 123-138 4-19 (206)
437 3dmn_A Putative DNA helicase; 49.6 1.1E+02 0.0038 25.3 9.9 80 405-501 45-124 (174)
438 3tlx_A Adenylate kinase 2; str 49.5 8.9 0.00031 34.3 2.7 18 121-138 29-46 (243)
439 1e4v_A Adenylate kinase; trans 49.5 9.2 0.00031 33.3 2.8 16 123-138 2-17 (214)
440 3tqf_A HPR(Ser) kinase; transf 49.5 8.9 0.0003 32.3 2.5 19 120-138 15-33 (181)
441 2if2_A Dephospho-COA kinase; a 49.4 9.2 0.00031 32.9 2.8 16 123-138 3-18 (204)
442 2jaq_A Deoxyguanosine kinase; 49.3 9.3 0.00032 32.8 2.8 16 123-138 2-17 (205)
443 2ghi_A Transport protein; mult 49.3 7.4 0.00025 35.4 2.2 18 120-137 45-62 (260)
444 3qf7_A RAD50; ABC-ATPase, ATPa 49.3 7 0.00024 37.6 2.1 16 123-138 25-40 (365)
445 1nij_A Hypothetical protein YJ 49.2 16 0.00054 34.3 4.5 15 123-137 6-20 (318)
446 3m6a_A ATP-dependent protease 48.9 7.3 0.00025 39.8 2.3 19 120-138 107-125 (543)
447 1g6h_A High-affinity branched- 48.9 7.2 0.00025 35.4 2.0 17 120-136 32-48 (257)
448 3sr0_A Adenylate kinase; phosp 48.9 9.8 0.00033 33.1 2.8 16 123-138 2-17 (206)
449 1nn5_A Similar to deoxythymidy 48.9 10 0.00036 32.8 3.1 19 120-138 8-26 (215)
450 4gl2_A Interferon-induced heli 48.8 5.3 0.00018 42.3 1.3 73 423-498 55-143 (699)
451 3d1p_A Putative thiosulfate su 48.8 13 0.00045 29.7 3.5 38 422-459 89-127 (139)
452 4e22_A Cytidylate kinase; P-lo 48.5 10 0.00035 34.2 3.0 18 120-137 26-43 (252)
453 3gfo_A Cobalt import ATP-bindi 48.5 7.9 0.00027 35.5 2.3 18 120-137 33-50 (275)
454 2z0h_A DTMP kinase, thymidylat 48.3 7.8 0.00027 33.1 2.1 15 124-138 3-17 (197)
455 1sxj_C Activator 1 40 kDa subu 48.2 9.4 0.00032 36.2 2.8 16 123-138 48-63 (340)
456 1ji0_A ABC transporter; ATP bi 47.8 7.7 0.00026 34.7 2.0 17 120-136 31-47 (240)
457 2ff7_A Alpha-hemolysin translo 47.8 8.5 0.00029 34.6 2.3 18 120-137 34-51 (247)
458 3h11_B Caspase-8; cell death, 47.8 44 0.0015 30.4 7.1 48 423-471 16-84 (271)
459 1uf9_A TT1252 protein; P-loop, 47.8 10 0.00034 32.5 2.8 16 123-138 10-25 (203)
460 1b0u_A Histidine permease; ABC 47.8 8 0.00027 35.2 2.2 17 120-136 31-47 (262)
461 3a4m_A L-seryl-tRNA(SEC) kinas 47.6 7.9 0.00027 35.1 2.1 17 122-138 5-21 (260)
462 1mv5_A LMRA, multidrug resista 47.6 6.9 0.00023 35.1 1.6 17 120-136 27-43 (243)
463 2olj_A Amino acid ABC transpor 47.4 8.2 0.00028 35.1 2.2 17 120-136 49-65 (263)
464 1vee_A Proline-rich protein fa 47.3 15 0.0005 29.3 3.5 37 423-459 73-110 (134)
465 1vpl_A ABC transporter, ATP-bi 47.3 8.3 0.00028 34.9 2.2 17 120-136 40-56 (256)
466 4g1u_C Hemin import ATP-bindin 47.1 8.8 0.0003 35.0 2.3 18 120-137 36-53 (266)
467 2qi9_C Vitamin B12 import ATP- 47.0 8.1 0.00028 34.8 2.0 17 120-136 25-41 (249)
468 1tf7_A KAIC; homohexamer, hexa 46.9 22 0.00075 36.1 5.5 31 118-148 36-66 (525)
469 2yz2_A Putative ABC transporte 46.8 8.5 0.00029 35.1 2.2 17 120-136 32-48 (266)
470 2z83_A Helicase/nucleoside tri 46.8 34 0.0012 33.9 6.8 49 166-221 190-244 (459)
471 2pbr_A DTMP kinase, thymidylat 46.8 11 0.00037 32.0 2.8 15 124-138 3-17 (195)
472 1ls1_A Signal recognition part 46.7 20 0.00068 33.2 4.7 19 120-138 97-115 (295)
473 1np6_A Molybdopterin-guanine d 46.6 25 0.00087 29.5 5.0 15 123-137 8-22 (174)
474 2f1r_A Molybdopterin-guanine d 46.5 6.3 0.00021 33.2 1.1 16 123-138 4-19 (171)
475 3auy_A DNA double-strand break 46.3 8.2 0.00028 37.2 2.1 16 122-137 26-41 (371)
476 2v6i_A RNA helicase; membrane, 46.3 19 0.00066 35.4 4.9 49 166-221 171-225 (431)
477 2bbw_A Adenylate kinase 4, AK4 46.3 11 0.00039 33.6 3.0 17 121-137 27-43 (246)
478 1qtn_A Caspase-8; apoptosis, d 46.2 73 0.0025 26.3 7.6 72 434-511 54-130 (164)
479 1j8m_F SRP54, signal recogniti 46.1 19 0.00063 33.4 4.4 19 121-139 98-116 (297)
480 2ykg_A Probable ATP-dependent 45.8 41 0.0014 35.3 7.7 73 424-499 61-144 (696)
481 1nkt_A Preprotein translocase 45.6 49 0.0017 35.6 7.9 69 424-497 152-237 (922)
482 2vhj_A Ntpase P4, P4; non- hyd 45.6 10 0.00035 35.6 2.5 23 119-141 121-143 (331)
483 2nq2_C Hypothetical ABC transp 45.5 8.6 0.00029 34.8 2.0 17 120-136 30-46 (253)
484 2ihy_A ABC transporter, ATP-bi 45.3 8.8 0.0003 35.3 2.0 17 120-136 46-62 (279)
485 2xb4_A Adenylate kinase; ATP-b 45.1 12 0.0004 33.0 2.8 16 123-138 2-17 (223)
486 3i5x_A ATP-dependent RNA helic 45.0 62 0.0021 32.9 8.7 71 165-249 338-418 (563)
487 3pey_A ATP-dependent RNA helic 45.0 60 0.0021 30.8 8.3 71 422-499 73-153 (395)
488 2ixe_A Antigen peptide transpo 44.8 10 0.00036 34.6 2.4 17 120-136 44-60 (271)
489 2grj_A Dephospho-COA kinase; T 44.8 12 0.00042 32.0 2.8 16 123-138 14-29 (192)
490 2p5t_B PEZT; postsegregational 44.7 6.3 0.00022 35.6 0.9 18 121-138 32-49 (253)
491 3of5_A Dethiobiotin synthetase 44.7 23 0.00078 31.3 4.6 26 123-149 6-32 (228)
492 1vht_A Dephospho-COA kinase; s 44.1 9.8 0.00033 33.2 2.1 17 122-138 5-21 (218)
493 2zu0_C Probable ATP-dependent 43.9 14 0.00047 33.7 3.1 18 120-137 45-62 (267)
494 3qks_A DNA double-strand break 43.9 10 0.00034 32.9 2.1 16 122-137 24-39 (203)
495 3nh6_A ATP-binding cassette SU 43.7 9 0.00031 35.8 1.8 18 120-137 79-96 (306)
496 3k1j_A LON protease, ATP-depen 43.5 13 0.00045 38.5 3.3 20 118-137 57-76 (604)
497 3pxi_A Negative regulator of g 43.4 9.8 0.00034 40.8 2.3 18 121-138 201-218 (758)
498 3h11_A CAsp8 and FADD-like apo 43.3 24 0.00081 32.2 4.5 48 423-471 42-89 (272)
499 2d2e_A SUFC protein; ABC-ATPas 43.1 14 0.00048 33.2 3.0 18 120-137 28-45 (250)
500 4a2w_A RIG-I, retinoic acid in 42.8 34 0.0012 37.6 6.5 72 424-498 296-378 (936)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-58 Score=466.69 Aligned_cols=362 Identities=27% Similarity=0.423 Sum_probs=303.3
Q ss_pred ecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 80 ADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
+.+..+|+++++++.++++++++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.....
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~-------- 123 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH-------- 123 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC--------
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc--------
Confidence 445678999999999999999999999999999999999999999999999999999999999999876411
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhh
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
.....++++||++||++|+.|+.+.++++....+ +++..++|+.... ..+++|+|+||++|.+++....
T Consensus 124 -~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~- 198 (434)
T 2db3_A 124 -ELELGRPQVVIVSPTRELAIQIFNEARKFAFESY---LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF- 198 (434)
T ss_dssp -CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS---CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-
T ss_pred -ccccCCccEEEEecCHHHHHHHHHHHHHHhccCC---cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-
Confidence 1123467999999999999999999999987665 7788888887643 4679999999999998875432
Q ss_pred hccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhccc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISD 313 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (548)
..+.++++||+||||++++.+|...+..++..+.
T Consensus 199 ---~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~------------------------------------------- 232 (434)
T 2db3_A 199 ---ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT------------------------------------------- 232 (434)
T ss_dssp ---CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTT-------------------------------------------
T ss_pred ---cccccCCeEEEccHhhhhccCcHHHHHHHHHhcC-------------------------------------------
Confidence 3478899999999999999999999999886542
Q ss_pred CCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc
Q 045757 314 EGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR 393 (548)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 393 (548)
.....|++++|||++......+..++. ....+...........
T Consensus 233 ---------------------------------~~~~~q~l~~SAT~~~~~~~~~~~~l~----~~~~i~~~~~~~~~~~ 275 (434)
T 2db3_A 233 ---------------------------------MRPEHQTLMFSATFPEEIQRMAGEFLK----NYVFVAIGIVGGACSD 275 (434)
T ss_dssp ---------------------------------SCSSCEEEEEESCCCHHHHHHHHTTCS----SCEEEEESSTTCCCTT
T ss_pred ---------------------------------CCCCceEEEEeccCCHHHHHHHHHhcc----CCEEEEeccccccccc
Confidence 024689999999998655544444333 2222222222233345
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
+.+.+..+....+...+.+.+... ..++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|+ +
T Consensus 276 i~~~~~~~~~~~k~~~l~~~l~~~------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 276 VKQTIYEVNKYAKRSKLIEILSEQ------ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHC------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred cceEEEEeCcHHHHHHHHHHHHhC------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 566666777777888888777652 345999999999999999999999999999999999999999999999 6
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEee-cCchhHHHHHHHHHH
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT-ESNRDLVDTIRRAAK 543 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~-~~~~~~~~~i~~~~~ 543 (548)
+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|++ +++...++.|.+.++
T Consensus 350 ~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 350 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp SCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred CCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999 457777777777765
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-55 Score=447.70 Aligned_cols=376 Identities=25% Similarity=0.393 Sum_probs=298.7
Q ss_pred eecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCC----
Q 045757 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE---- 154 (548)
Q Consensus 79 ~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~---- 154 (548)
.+....+|+++++++.+.+++..+||..|+|+|.++++.+++|+|++++||||+|||++|++|+++.+........
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 3455677999999999999999999999999999999999999999999999999999999999999876511000
Q ss_pred CCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhc
Q 045757 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l 228 (548)
...........++++||++||++|+.|+.+.++++....+ +++..+.|+.... ..+++|+|+||++|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 166 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHH
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC---ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHH
Confidence 0000000112346899999999999999999999987665 7888888887643 457899999999999887
Q ss_pred ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
.... ..+.++++||+||||++++++|...+..++......
T Consensus 167 ~~~~----~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~------------------------------------ 206 (417)
T 2i4i_A 167 ERGK----IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP------------------------------------ 206 (417)
T ss_dssp HTTS----BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC------------------------------------
T ss_pred HcCC----cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC------------------------------------
Confidence 5432 347789999999999999999999888887543100
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
.....|++++|||++..........+. ....+......
T Consensus 207 --------------------------------------~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~ 244 (417)
T 2i4i_A 207 --------------------------------------PKGVRHTMMFSATFPKEIQMLARDFLD----EYIFLAVGRVG 244 (417)
T ss_dssp --------------------------------------CBTTBEEEEEESCCCHHHHHHHHHHCS----SCEEEEEC---
T ss_pred --------------------------------------CcCCcEEEEEEEeCCHHHHHHHHHHcC----CCEEEEeCCCC
Confidence 012578999999997554443333332 22222222222
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
.....+.+.+..+....+...+.+.+.. ...++++||||++++.++.+++.|.+.++.+..+||+++.++|.++++
T Consensus 245 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 245 STSENITQKVVWVEESDKRSFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -CCSSEEEEEEECCGGGHHHHHHHHHHT----CCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCccCceEEEEEeccHhHHHHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 2334455555666666676666666554 246789999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
.|+ ++.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.++
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 999 777999999999999999999999999999999999999999999999999999999999999999988775
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-54 Score=442.45 Aligned_cols=357 Identities=24% Similarity=0.398 Sum_probs=296.0
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...+|+++++++.+.+++..+||..|+|+|.++++.+++|+++++++|||+|||++|++|+++.+...
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------------ 102 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------------ 102 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------------
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------------
Confidence 34579999999999999999999999999999999999999999999999999999999999876211
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..+.++||++||++|+.|+.+.+.++....+ +.+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 103 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~--- 174 (410)
T 2j0s_A 103 --VRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--- 174 (410)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---
T ss_pred --cCCceEEEEcCcHHHHHHHHHHHHHHhccCC---eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---
Confidence 2467999999999999999999999987766 7788888887643 2468999999999998875432
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||||+++++++...+..++..++
T Consensus 175 -~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------------- 208 (410)
T 2j0s_A 175 -LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------------------------------------------- 208 (410)
T ss_dssp -SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC---------------------------------------------
T ss_pred -ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc---------------------------------------------
Confidence 3367899999999999999999888887776553
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|++++|||++..........+ .....+...........+.
T Consensus 209 ---------------------------------~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 251 (410)
T 2j0s_A 209 ---------------------------------PATQVVLISATLPHEILEMTNKFM----TDPIRILVKRDELTLEGIK 251 (410)
T ss_dssp ---------------------------------TTCEEEEEESCCCHHHHTTGGGTC----SSCEEECCCGGGCSCTTEE
T ss_pred ---------------------------------cCceEEEEEcCCCHHHHHHHHHHc----CCCEEEEecCccccCCCce
Confidence 458999999999854433333322 2222222222222233344
Q ss_pred cceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 396 EKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 396 ~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
+.+..+.... +...+.+.+... ..+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|+ ++
T Consensus 252 ~~~~~~~~~~~k~~~l~~~~~~~-----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 252 QFFVAVEREEWKFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHH-----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred EEEEEeCcHHhHHHHHHHHHHhc-----CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 4455444443 666666666553 4569999999999999999999999999999999999999999999999 77
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.++..+
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 399 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI 399 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCC
T ss_pred CCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999888654
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.7e-54 Score=456.68 Aligned_cols=380 Identities=24% Similarity=0.382 Sum_probs=294.7
Q ss_pred CCcccccC----CCHHHHHHHHHCCCCCCcHHHHhhhhccc--CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCC
Q 045757 83 NVTWKSLG----LSDRLIRALENSGFGRPSIVQAASVGPVL--SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENS 156 (548)
Q Consensus 83 ~~~~~~l~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~ 156 (548)
..+|+++. |++.+++++..+||..|+|+|.++++.++ .|++++++||||+|||++|++|+++.+....
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~------ 89 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 89 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc------
Confidence 34566664 99999999999999999999999999999 7789999999999999999999999987651
Q ss_pred CCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhccc-CCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhc
Q 045757 157 NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN-GEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 157 ~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l 228 (548)
.....+.++|||+||++|+.|+.+.++++.... +.+.+.+..+.|+.... ..+++|+|+||++|.+++
T Consensus 90 ----~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 90 ----FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp ----TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred ----ccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 112235789999999999999999999886421 22236677888887644 247999999999999888
Q ss_pred ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
.... ...+..+++||+||||++++++|...+..++..++..
T Consensus 166 ~~~~---~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~------------------------------------ 206 (579)
T 3sqw_A 166 EKYS---NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEK------------------------------------ 206 (579)
T ss_dssp HHHH---HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH------------------------------------
T ss_pred Hhcc---ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhh------------------------------------
Confidence 5432 2347889999999999999999999999888766410
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
........|++++|||++..........+................
T Consensus 207 -----------------------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 207 -----------------------------------NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp -----------------------------------CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred -----------------------------------hcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 011123579999999998655554444433211000000000011
Q ss_pred ccCcccccceeeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc---CCceEEecCCCCHHHHH
Q 045757 389 FHNPRLKEKWIEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA---GIECYCYHKDLSLEERA 464 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~ 464 (548)
.....+.+....... ......+++.+...+.....+.++||||+++..++.+++.|.+. ++.+..+||+|+..+|.
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~ 331 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 331 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHH
Confidence 111222233333222 33444555555555444456789999999999999999999987 89999999999999999
Q ss_pred HHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 465 KTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 465 ~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
++++.|+ ++.+|||||+++++|||+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.|++..+
T Consensus 332 ~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999 778999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCC
Q 045757 544 LGQ 546 (548)
Q Consensus 544 ~~~ 546 (548)
..+
T Consensus 412 ~~~ 414 (579)
T 3sqw_A 412 IVI 414 (579)
T ss_dssp CCC
T ss_pred CCc
Confidence 443
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.7e-54 Score=435.46 Aligned_cols=357 Identities=24% Similarity=0.418 Sum_probs=291.5
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
....+|+++++++.+.+++.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----------- 86 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----------- 86 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----------
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----------
Confidence 345679999999999999999999999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
..+.++||++|+++|+.|+.+.++++....+ +.+..+.|+.... ..+++|+|+||+++.+.+...
T Consensus 87 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--- 157 (400)
T 1s2m_A 87 ---LNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK--- 157 (400)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT---
T ss_pred ---cCCccEEEEcCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC---
Confidence 2356899999999999999999999987766 7788888876543 367899999999998877443
Q ss_pred ccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccC
Q 045757 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDE 314 (548)
Q Consensus 235 ~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (548)
...+.++++||+||||++.+.++...+..++..++
T Consensus 158 -~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~-------------------------------------------- 192 (400)
T 1s2m_A 158 -VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-------------------------------------------- 192 (400)
T ss_dssp -CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC--------------------------------------------
T ss_pred -CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------------
Confidence 23477899999999999987777777776665442
Q ss_pred CCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc
Q 045757 315 GNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL 394 (548)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 394 (548)
...|++++|||++..........+.. ...+... .......+
T Consensus 193 ----------------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~ 233 (400)
T 1s2m_A 193 ----------------------------------PTHQSLLFSATFPLTVKEFMVKHLHK----PYEINLM-EELTLKGI 233 (400)
T ss_dssp ----------------------------------SSCEEEEEESCCCHHHHHHHHHHCSS----CEEESCC-SSCBCTTE
T ss_pred ----------------------------------cCceEEEEEecCCHHHHHHHHHHcCC----CeEEEec-cccccCCc
Confidence 45799999999985444333332221 1111100 01122234
Q ss_pred ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
.+.+..+....+...+...+.. ...+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|+ ++
T Consensus 234 ~~~~~~~~~~~k~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (400)
T 1s2m_A 234 TQYYAFVEERQKLHCLNTLFSK-----LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 308 (400)
T ss_dssp EEEEEECCGGGHHHHHHHHHHH-----SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred eeEEEEechhhHHHHHHHHHhh-----cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 4444555555666666655554 35679999999999999999999999999999999999999999999999 67
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.|...+++|++.++..+
T Consensus 309 ~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 381 (400)
T 1s2m_A 309 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI 381 (400)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999887654
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.5e-54 Score=438.42 Aligned_cols=361 Identities=24% Similarity=0.420 Sum_probs=283.1
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
...+...+|+++++++.+.+.++++|+..|+++|.++++.+++|++++++||||+|||++|++|+++.+...
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------- 105 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-------- 105 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--------
Confidence 344556789999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcCh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
..+.++||++|+++|+.|+.+.++++....+ ..+....|+.... ..+++|+|+||++|.+.+..
T Consensus 106 ------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~ 176 (414)
T 3eiq_A 106 ------LKATQALVLAPTRELAQQIQKVVMALGDYMG---ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR 176 (414)
T ss_dssp ------SCSCCEEEECSSHHHHHHHHHHHHHHGGGSC---CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH
T ss_pred ------CCceeEEEEeChHHHHHHHHHHHHHHhcccC---ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 2467899999999999999999999987766 6777778876643 26789999999999988854
Q ss_pred hhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (548)
.. ..+.++++||+||||++.++++...+..++..++
T Consensus 177 ~~----~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~---------------------------------------- 212 (414)
T 3eiq_A 177 RY----LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN---------------------------------------- 212 (414)
T ss_dssp TS----SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC----------------------------------------
T ss_pred CC----cccccCcEEEEECHHHhhccCcHHHHHHHHHhCC----------------------------------------
Confidence 32 3367799999999999999999888888876653
Q ss_pred cccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccccc
Q 045757 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFH 390 (548)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (548)
...|++++|||++.......... ......+........
T Consensus 213 --------------------------------------~~~~~i~~SAT~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 250 (414)
T 3eiq_A 213 --------------------------------------SNTQVVLLSATMPSDVLEVTKKF----MRDPIRILVKKEELT 250 (414)
T ss_dssp --------------------------------------TTCEEEEECSCCCHHHHHHHTTT----CSSCEEECCCCCCCC
T ss_pred --------------------------------------CCCeEEEEEEecCHHHHHHHHHH----cCCCEEEEecCCccC
Confidence 46899999999975443333322 222222222222222
Q ss_pred Ccccccceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHh
Q 045757 391 NPRLKEKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVN 469 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 469 (548)
...+.+.+....... +...+.+.+.. ...+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~ 325 (414)
T 3eiq_A 251 LEGIRQFYINVEREEWKLDTLCDLYET-----LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMRE 325 (414)
T ss_dssp TTSCCEEEEECSSSTTHHHHHHHHHHS-----SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHH
T ss_pred CCCceEEEEEeChHHhHHHHHHHHHHh-----CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHH
Confidence 333444444444333 55555555543 356799999999999999999999999999999999999999999999
Q ss_pred hc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 470 f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
|+ ++.+|||||+++++|+|+|++++||+++.|.|..+|+||+||+||.|+.|.|++|+++.+...++.+++.++..+
T Consensus 326 f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (414)
T 3eiq_A 326 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSI 403 (414)
T ss_dssp HSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCC
T ss_pred HHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 99 667999999999999999999999999999999999999999999999999999999999999999999887654
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6e-54 Score=454.15 Aligned_cols=379 Identities=23% Similarity=0.381 Sum_probs=293.7
Q ss_pred CCcccccC----CCHHHHHHHHHCCCCCCcHHHHhhhhccc--CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCC
Q 045757 83 NVTWKSLG----LSDRLIRALENSGFGRPSIVQAASVGPVL--SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENS 156 (548)
Q Consensus 83 ~~~~~~l~----l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~ 156 (548)
..+|+++. +++.+++++.++||..|+|+|.++++.++ .++|++++||||+|||++|++|+++.+....
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~------ 140 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK------ 140 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT------
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc------
Confidence 34566664 99999999999999999999999999999 6789999999999999999999999987651
Q ss_pred CCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcc-cCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhc
Q 045757 157 NSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSAD-NGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNI 228 (548)
Q Consensus 157 ~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l 228 (548)
.....+.++|||+||++|+.|+.+.++++... .+...+.+..+.|+.... ..+++|+|+||++|.+++
T Consensus 141 ----~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 216 (563)
T 3i5x_A 141 ----FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL 216 (563)
T ss_dssp ----TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred ----ccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHH
Confidence 11223568999999999999999999987543 122235677788887643 347899999999999888
Q ss_pred ChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 229 DPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 229 ~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
.... ...+.++++||+||||++++++|...+..++..++..
T Consensus 217 ~~~~---~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~------------------------------------ 257 (563)
T 3i5x_A 217 EKYS---NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEK------------------------------------ 257 (563)
T ss_dssp HHHH---HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH------------------------------------
T ss_pred Hhcc---ccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhc------------------------------------
Confidence 5432 2347889999999999999999999999888766410
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
........|++++|||++..........+................
T Consensus 258 -----------------------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 258 -----------------------------------NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp -----------------------------------CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred -----------------------------------cccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 011123679999999998655544444333211000000000011
Q ss_pred ccCcccccceeeec-chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc---CCceEEecCCCCHHHHH
Q 045757 389 FHNPRLKEKWIEVT-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA---GIECYCYHKDLSLEERA 464 (548)
Q Consensus 389 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~ 464 (548)
.....+.+...... ...+....++.+...+.....+.++||||++++.++.+++.|.+. ++.+..+||+|+..+|.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 303 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 11122222222222 223444455555555444456789999999999999999999987 89999999999999999
Q ss_pred HHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 465 KTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 465 ~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
.+++.|+ ++.+|||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.+...++.|++..+
T Consensus 383 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999 778999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cC
Q 045757 544 LG 545 (548)
Q Consensus 544 ~~ 545 (548)
..
T Consensus 463 ~~ 464 (563)
T 3i5x_A 463 IV 464 (563)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-52 Score=423.21 Aligned_cols=355 Identities=21% Similarity=0.361 Sum_probs=287.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|+++++++.+.++|.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+...
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------------- 73 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------------- 73 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------------
Confidence 469999999999999999999999999999999999999999999999999999999999876221
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
..+.++||++|+++|+.|+.+.++++..... .+++..+.|+.... .+.++|+|+||+++...+....
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---- 147 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---- 147 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCT--TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS----
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCC--CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----
Confidence 2356899999999999999999999876541 27888888887643 2458999999999988775432
Q ss_pred ccccCeeEEEEecchhhccC-ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 237 EFVRGVKYVVFDEADMLLCG-SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||||++.++ ++...+..++...
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~---------------------------------------------- 181 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT---------------------------------------------- 181 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTS----------------------------------------------
T ss_pred ccccccCEEEEeCHHHHhhccchHHHHHHHHhhC----------------------------------------------
Confidence 34678999999999998764 5555555554333
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccc-cccccCccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGN-YLHFHNPRL 394 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 394 (548)
....|++++|||++..........+.. ...+... ........+
T Consensus 182 --------------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 225 (391)
T 1xti_A 182 --------------------------------PHEKQVMMFSATLSKEIRPVCRKFMQD----PMEIFVDDETKLTLHGL 225 (391)
T ss_dssp --------------------------------CSSSEEEEEESSCCSTHHHHHHHHCSS----CEEEECCCCCCCCCTTC
T ss_pred --------------------------------CCCceEEEEEeeCCHHHHHHHHHHcCC----CeEEEecCccccCcccc
Confidence 246899999999986655444443332 2111111 111222334
Q ss_pred ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
.+.+.......+...+.+.+.. ..++++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|+ ++
T Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 300 (391)
T 1xti_A 226 QQYYVKLKDNEKNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300 (391)
T ss_dssp EEEEEECCGGGHHHHHHHHHHH-----SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred eEEEEEcCchhHHHHHHHHHHh-----cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4555566666777777776665 36789999999999999999999999999999999999999999999999 67
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHHcC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAKLG 545 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~~~ 545 (548)
.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.|+.|.|++++++. +...++.+++.++..
T Consensus 301 ~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (391)
T 1xti_A 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 373 (391)
T ss_dssp CSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCC
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999999999999999999999999976 567788888876644
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.4e-52 Score=421.01 Aligned_cols=359 Identities=23% Similarity=0.362 Sum_probs=287.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
...+|+++++++.+++++.++||..|+|+|.++++.++++ ++++++||||+|||++|++|+++.+...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---------- 92 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 92 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc----------
Confidence 3457999999999999999999999999999999999987 9999999999999999999999877332
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
..+.++||++|+++|+.|+.+.++++..... .+.+....++.... ...++|+|+||+++.+.+.... .
T Consensus 93 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~---~ 163 (412)
T 3fht_A 93 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK---F 163 (412)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC---S
T ss_pred ----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcc--cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC---C
Confidence 2456899999999999999999999876532 26677777765544 3467999999999998885432 2
Q ss_pred ccccCeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 237 EFVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||||++.+ .++...+..+...++
T Consensus 164 ~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 198 (412)
T 3fht_A 164 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------------- 198 (412)
T ss_dssp SCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC---------------------------------------------
T ss_pred cChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC---------------------------------------------
Confidence 2357899999999999886 567666666655442
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|++++|||++..........+ .....+...........+.
T Consensus 199 ---------------------------------~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 241 (412)
T 3fht_A 199 ---------------------------------RNCQMLLFSATFEDSVWKFAQKVV----PDPNVIKLKREEETLDTIK 241 (412)
T ss_dssp ---------------------------------TTCEEEEEESCCCHHHHHHHHHHS----SSCEEECCCGGGSSCTTEE
T ss_pred ---------------------------------CCceEEEEEeecCHHHHHHHHHhc----CCCeEEeeccccccccCce
Confidence 468999999999854444433332 2333332222222333344
Q ss_pred cceeeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 396 EKWIEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 396 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
+.+..... ..+...+.+.+.. ..++++||||++++.++.+++.|.+.++.+..+||+|+..+|.++++.|+ ++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 316 (412)
T 3fht_A 242 QYYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEEEcCChHHHHHHHHHHHhh-----cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC
Confidence 44444333 3455555555554 35679999999999999999999999999999999999999999999999 67
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCC------CCHHHHHHHhcccccCCCcceEEEEeecCc-hhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFA------TSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~-~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+++.++..+
T Consensus 317 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 317 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred CcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 7999999999999999999999999999 577999999999999999999999999764 888999998877553
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.3e-53 Score=421.61 Aligned_cols=351 Identities=28% Similarity=0.475 Sum_probs=292.9
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
..+|+++++++.+.+.|+++||..|+|+|.++++.++++ +++++.+|||+|||++|++|++..+...
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------------ 72 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------------ 72 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------------
Confidence 457999999999999999999999999999999999988 7999999999999999999998876321
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
++.++||++|+++|+.|+.+.+.++....+ +.+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 73 ---~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---- 142 (367)
T 1hv8_A 73 ---NGIEAIILTPTRELAIQVADEIESLKGNKN---LKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---- 142 (367)
T ss_dssp ---SSCCEEEECSCHHHHHHHHHHHHHHHCSSC---CCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC----
T ss_pred ---CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC---ceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCC----
Confidence 467899999999999999999999986655 7788888887643 2478999999999988775432
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
..+.++++||+||||++.++++...+..++..++
T Consensus 143 ~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~---------------------------------------------- 176 (367)
T 1hv8_A 143 LNLKNVKYFILDEADEMLNMGFIKDVEKILNACN---------------------------------------------- 176 (367)
T ss_dssp SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC----------------------------------------------
T ss_pred cccccCCEEEEeCchHhhhhchHHHHHHHHHhCC----------------------------------------------
Confidence 3367899999999999998888887777765442
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
...+++++|||++..........+. ....+... ....+.+
T Consensus 177 --------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~ 216 (367)
T 1hv8_A 177 --------------------------------KDKRILLFSATMPREILNLAKKYMG----DYSFIKAK----INANIEQ 216 (367)
T ss_dssp --------------------------------SSCEEEEECSSCCHHHHHHHHHHCC----SEEEEECC----SSSSSEE
T ss_pred --------------------------------CCceEEEEeeccCHHHHHHHHHHcC----CCeEEEec----CCCCceE
Confidence 4688999999998543333332222 22221111 1123444
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
.+..+....+...+.+.+. ..+.++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|+ ++.+
T Consensus 217 ~~~~~~~~~~~~~l~~~l~------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 217 SYVEVNENERFEALCRLLK------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp EEEECCGGGHHHHHHHHHC------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred EEEEeChHHHHHHHHHHHh------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 5556666667766666554 35789999999999999999999999999999999999999999999999 6679
Q ss_pred EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 476 VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 476 vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
|||||+++++|+|+|++++||++++|.|..+|+||+||+||.|++|.+++++++.+...++.|++.++..++
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-51 Score=418.19 Aligned_cols=354 Identities=23% Similarity=0.399 Sum_probs=280.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
...+|+++++++.+.+++.++|+..|+|+|.++++.++.+ ++++++||||+|||++|++|++..+...
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------- 72 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------- 72 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----------
Confidence 3467999999999999999999999999999999999988 9999999999999999999999876322
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc--CCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP--IGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
..+.++||++|+++|+.|+.+.++++....+ +.+....++.... ..+++|+|+||+++.+.+... ..
T Consensus 73 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~ 141 (395)
T 3pey_A 73 ----DASPQAICLAPSRELARQTLEVVQEMGKFTK---ITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK----LM 141 (395)
T ss_dssp ----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT----CB
T ss_pred ----CCCccEEEECCCHHHHHHHHHHHHHHhcccC---eeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC----Cc
Confidence 2467899999999999999999999887665 6666666665433 347899999999998877543 23
Q ss_pred cccCeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 238 FVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
.+.++++||+||||++.+ .++...+..+...++
T Consensus 142 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 175 (395)
T 3pey_A 142 QLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP---------------------------------------------- 175 (395)
T ss_dssp CCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC----------------------------------------------
T ss_pred ccccCCEEEEEChhhhcCccccHHHHHHHHHhCC----------------------------------------------
Confidence 477899999999999887 566666666554432
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
...|++++|||++..........+ .....+...........+.+
T Consensus 176 --------------------------------~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 219 (395)
T 3pey_A 176 --------------------------------KDTQLVLFSATFADAVRQYAKKIV----PNANTLELQTNEVNVDAIKQ 219 (395)
T ss_dssp --------------------------------TTCEEEEEESCCCHHHHHHHHHHS----CSCEEECCCGGGCSCTTEEE
T ss_pred --------------------------------CCcEEEEEEecCCHHHHHHHHHhC----CCCeEEEccccccccccccE
Confidence 458999999999754443333332 22222222222222233334
Q ss_pred ceeeecch-hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 397 KWIEVTVD-TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 397 ~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
.+...... .+...+.+.+.. ...+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|+ ++.
T Consensus 220 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 294 (395)
T 3pey_A 220 LYMDCKNEADKFDVLTELYGL-----MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS 294 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-----TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred EEEEcCchHHHHHHHHHHHHh-----ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 44443332 233333333222 35689999999999999999999999999999999999999999999999 677
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCCC------CHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHH
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFAT------SAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAK 543 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p~------s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~ 543 (548)
+|||||+++++|+|+|++++||++++|. |...|+||+||+||.|+.|.+++++.+. +...++.+++.++
T Consensus 295 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998 9999999999999999999999999874 5667777777665
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.9e-53 Score=428.59 Aligned_cols=358 Identities=23% Similarity=0.422 Sum_probs=161.1
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
+...+|+++++++.+.+.+..+|+..|+|+|.++++.+++|+++++++|||+|||++|++|+++.+...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------- 86 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------- 86 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----------
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----------
Confidence 445679999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..+.++||++|+++|+.|+.+.+.++....+ +++..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 87 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--- 157 (394)
T 1fuu_A 87 ---VKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR--- 157 (394)
T ss_dssp ---CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---
T ss_pred ---CCCCCEEEEcCCHHHHHHHHHHHHHHhccCC---eeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---
Confidence 2467999999999999999999999987666 7788888886643 2368999999999988775432
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCC
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEG 315 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (548)
..+.++++||+||||++.++++...+..++..++
T Consensus 158 -~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------------------- 191 (394)
T 1fuu_A 158 -FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--------------------------------------------- 191 (394)
T ss_dssp -SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC---------------------------------------------
T ss_pred -cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC---------------------------------------------
Confidence 3367899999999999998888888877776553
Q ss_pred CCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccc
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLK 395 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (548)
...|++++|||++..........+. ....+...........+.
T Consensus 192 ---------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 234 (394)
T 1fuu_A 192 ---------------------------------PTTQVVLLSATMPNDVLEVTTKFMR----NPVRILVKKDELTLEGIK 234 (394)
T ss_dssp ---------------------------------TTCEEEEECSSCCHHHHHHHHHHCC----SCEEEEECC---------
T ss_pred ---------------------------------CCceEEEEEEecCHHHHHHHHHhcC----CCeEEEecCccccCCCce
Confidence 4589999999998543333332222 222211111111122233
Q ss_pred cceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 396 EKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 396 ~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
+.+..+.... +...+.+.+.. ...+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|+ ++
T Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 309 (394)
T 1fuu_A 235 QFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 309 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCchhhHHHHHHHHHhc-----CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC
Confidence 3333332222 33333333332 24679999999999999999999999999999999999999999999999 66
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|++|.|++++++.+...++.+++.++..+
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 382 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 382 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999998777554
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=434.80 Aligned_cols=358 Identities=23% Similarity=0.361 Sum_probs=156.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
..+|++++|++.+++.+..+||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~----------- 159 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----------- 159 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----------
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----------
Confidence 457999999999999999999999999999999999987 8999999999999999999999876322
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
..++++|||+|+++|+.|+.+.++++..... .+.+....++.... ..+++|+|+||+++.+++.... ..
T Consensus 160 ---~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~ 231 (479)
T 3fmp_B 160 ---NKYPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK---FI 231 (479)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHHTTST--TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC---CC
T ss_pred ---CCCCcEEEEeChHHHHHHHHHHHHHHHhhCC--CceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC---Cc
Confidence 2356899999999999999999998876532 15666667765543 3467999999999998885432 23
Q ss_pred cccCeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 238 FVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
.+.++++||+||||++++ .++...+..+...++
T Consensus 232 ~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~---------------------------------------------- 265 (479)
T 3fmp_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP---------------------------------------------- 265 (479)
T ss_dssp CGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC----------------------------------------------
T ss_pred CcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC----------------------------------------------
Confidence 367899999999999886 567666666665442
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
...|++++|||++.......... .+....+...........+.+
T Consensus 266 --------------------------------~~~~~i~~SAT~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~ 309 (479)
T 3fmp_B 266 --------------------------------RNCQMLLFSATFEDSVWKFAQKV----VPDPNVIKLKREEETLDTIKQ 309 (479)
T ss_dssp --------------------------------TTSEEEEEESCCCHHHHHHHHHH----SSSEEEEEEC-----------
T ss_pred --------------------------------ccceEEEEeCCCCHHHHHHHHHH----cCCCeEEeccccccCcCCceE
Confidence 46899999999986544443333 233332222222222223333
Q ss_pred ceeeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 397 KWIEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 397 ~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
.+..+.. ..+...+...+.. ...+++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|+ ++.
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 384 (479)
T 3fmp_B 310 YYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHHHHhh-----ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 3333332 3344444444433 24679999999999999999999999999999999999999999999999 677
Q ss_pred cEEEEeCcccccCCCCCCCEEEEecCC------CCHHHHHHHhcccccCCCcceEEEEeecCc-hhHHHHHHHHHHcCC
Q 045757 475 GVFVCTDAAARGIDIPNVSHVIQADFA------TSAVDFLHRVGRTARAGQYGLVTSLYTESN-RDLVDTIRRAAKLGQ 546 (548)
Q Consensus 475 ~vLv~T~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~-~~~~~~i~~~~~~~~ 546 (548)
+|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|+.|.|++|+++.+ ...++.|++.++..+
T Consensus 385 ~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~ 463 (479)
T 3fmp_B 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 463 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999 467899999999999999999999999765 778888887766543
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-50 Score=423.17 Aligned_cols=340 Identities=19% Similarity=0.242 Sum_probs=259.1
Q ss_pred cccCCCHHHHHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 045757 87 KSLGLSDRLIRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPP 165 (548)
Q Consensus 87 ~~l~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~ 165 (548)
.++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-------------------- 83 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-------------------- 83 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------------
Confidence 357889999999987 69999999999999999999999999999999999999999742
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------------CCCCcEEEeChHHHHh---hcCh
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------------IGKPDVIVSTPAALLN---NIDP 230 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~Ilv~Tp~~l~~---~l~~ 230 (548)
.+.+|||+|+++|+.|+++.+.++. +.+..+.|+.... .+.++|+|+||++|.. ++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~ 156 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSR 156 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHH
Confidence 4689999999999999999999873 7788888876542 4678999999998853 2211
Q ss_pred hhhhccccccCeeEEEEecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQD 308 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (548)
- .....+.++++||+||||++++++ |...+..+-
T Consensus 157 l--~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~------------------------------------------ 192 (591)
T 2v1x_A 157 L--EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG------------------------------------------ 192 (591)
T ss_dssp H--HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG------------------------------------------
T ss_pred H--HhhhhccCCcEEEEECcccccccccccHHHHHHHH------------------------------------------
Confidence 1 112336789999999999998877 433321110
Q ss_pred hhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccccccc
Q 045757 309 EYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLH 388 (548)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 388 (548)
.+... .+..+++++|||++......+...+... ....+.. .
T Consensus 193 ---------------------------------~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~--~~~~~~~---~ 233 (591)
T 2v1x_A 193 ---------------------------------ILKRQ-FPNASLIGLTATATNHVLTDAQKILCIE--KCFTFTA---S 233 (591)
T ss_dssp ---------------------------------HHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCC--SCEEEEC---C
T ss_pred ---------------------------------HHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCC--CcEEEec---C
Confidence 01111 1357899999999865444444433321 1111111 1
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
...+++..... .........++.+.+.+.....++++||||++++.++.+++.|.+.++.+..+||+|+.++|.++++
T Consensus 234 ~~r~nl~~~v~--~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~ 311 (591)
T 2v1x_A 234 FNRPNLYYEVR--QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHR 311 (591)
T ss_dssp CCCTTEEEEEE--ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCcccEEEEE--eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 11122221111 1112222333334444332346789999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHH
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i 538 (548)
.|+ ++.+|||||+++++|||+|++++||++++|.|...|+||+||+||.|++|.|++||++.|...++.+
T Consensus 312 ~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 312 KWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999 6779999999999999999999999999999999999999999999999999999999887766554
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-49 Score=391.85 Aligned_cols=330 Identities=25% Similarity=0.413 Sum_probs=262.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
|++.+.++++++|+..|+|+|.++++.+++|+++++.+|||+|||++|++|+++. +.++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------------~~~~l 60 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------------GMKSL 60 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------------TCCEE
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------------cCCEE
Confidence 5788999999999999999999999999999999999999999999999998763 46899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
|++|+++|+.|+.+.++++....+ +++..+.|+.... ...++|+|+||++|.+.+... ...+.++++|
T Consensus 61 iv~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~~~i 133 (337)
T 2z0m_A 61 VVTPTRELTRQVASHIRDIGRYMD---TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG----VIDLSSFEIV 133 (337)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSC---CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT----SCCGGGCSEE
T ss_pred EEeCCHHHHHHHHHHHHHHhhhcC---CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC----CcchhhCcEE
Confidence 999999999999999999987666 6778888876543 246899999999998876433 2336788999
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||||++.++++...+..++..++
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 158 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTS------------------------------------------------------- 158 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCT-------------------------------------------------------
T ss_pred EEEChHHhhccccHHHHHHHHhhCC-------------------------------------------------------
Confidence 9999999998888888777765442
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchh
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDT 405 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (548)
...+++++|||++..........+. ....+... .....+.+.+..+...
T Consensus 159 -----------------------~~~~~~~~SAT~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~- 207 (337)
T 2z0m_A 159 -----------------------NRKITGLFSATIPEEIRKVVKDFIT----NYEEIEAC---IGLANVEHKFVHVKDD- 207 (337)
T ss_dssp -----------------------TCSEEEEEESCCCHHHHHHHHHHSC----SCEEEECS---GGGGGEEEEEEECSSS-
T ss_pred -----------------------cccEEEEEeCcCCHHHHHHHHHhcC----Cceeeecc---cccCCceEEEEEeChH-
Confidence 4578899999998554444333322 22222111 1112222333333222
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc
Q 045757 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA 484 (548)
Q Consensus 406 ~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~ 484 (548)
.......+.. ..++++||||++++.++.+++.|. .+..+||+++..+|.++++.|+ ++.+|||||++++
T Consensus 208 -~~~~~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 277 (337)
T 2z0m_A 208 -WRSKVQALRE-----NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277 (337)
T ss_dssp -SHHHHHHHHT-----CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHH
T ss_pred -HHHHHHHHHh-----CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccc
Confidence 2222333332 467899999999999999998886 6889999999999999999999 6779999999999
Q ss_pred ccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHc
Q 045757 485 RGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544 (548)
Q Consensus 485 ~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~ 544 (548)
+|+|+|++++||++++|.|...|+||+||+||.|+.|.|++++. .+...++.|++.++.
T Consensus 278 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 278 RGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp TTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999 888899998887653
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.4e-49 Score=410.90 Aligned_cols=336 Identities=21% Similarity=0.271 Sum_probs=262.4
Q ss_pred cccccCCCHHHHHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
+|+++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++.||||+|||++|++|++..
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------------ 64 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------------ 64 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------------
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------------
Confidence 58999999999999987 79999999999999999999999999999999999999998742
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhh
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRR 233 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~ 233 (548)
.+.+|||+|+++|+.|+++.++++. +.+..+.++.... .+.++|+|+||++|.......
T Consensus 65 --~g~~lvi~P~~aL~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-- 133 (523)
T 1oyw_A 65 --NGLTVVVSPLISLMKDQVDQLQANG-------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-- 133 (523)
T ss_dssp --SSEEEEECSCHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH--
T ss_pred --CCCEEEECChHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH--
Confidence 3579999999999999999998864 6777777775532 356899999999995332111
Q ss_pred hccccccCeeEEEEecchhhccCC--hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 234 RRMEFVRGVKYVVFDEADMLLCGS--FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 234 ~~~~~~~~~~~vV~DEah~l~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
.....++++||+||||++.+++ |......+....
T Consensus 134 --~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~------------------------------------------ 169 (523)
T 1oyw_A 134 --HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR------------------------------------------ 169 (523)
T ss_dssp --HHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH------------------------------------------
T ss_pred --HHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH------------------------------------------
Confidence 1224679999999999998876 444333221111
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN 391 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 391 (548)
.. .+..+++++|||++..........+.. ......... ...
T Consensus 170 ---------------------------------~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~---~~r 210 (523)
T 1oyw_A 170 ---------------------------------QR-FPTLPFMALTATADDTTRQDIVRLLGL--NDPLIQISS---FDR 210 (523)
T ss_dssp ---------------------------------HH-CTTSCEEEEESCCCHHHHHHHHHHHTC--CSCEEEECC---CCC
T ss_pred ---------------------------------Hh-CCCCCEEEEeCCCCHHHHHHHHHHhCC--CCCeEEeCC---CCC
Confidence 11 135789999999985443333222221 111111110 111
Q ss_pred cccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+++ .+.......+...+.+.+.. ..++++||||++++.++.+++.|.+.++.+..+||+|+.++|.++++.|+
T Consensus 211 ~~l--~~~v~~~~~~~~~l~~~l~~-----~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 211 PNI--RYMLMEKFKPLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp TTE--EEEEEECSSHHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred Cce--EEEEEeCCCHHHHHHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 122 12223334556667776665 35679999999999999999999999999999999999999999999999
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHH
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~ 539 (548)
++.+|||||+++++|||+|++++||++++|.|...|+||+||+||.|++|.|++|+++.|...++.+.
T Consensus 284 ~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred cCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999998877665544
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-49 Score=408.70 Aligned_cols=354 Identities=18% Similarity=0.322 Sum_probs=234.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
.|...++++.+.+.+.+.|+..|+++|.++++.+++| ++++++||||+|||++|+++++..+...
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------------- 186 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------------- 186 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-------------
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-------------
Confidence 4566678999999999999999999999999999988 9999999999999999999999887332
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc--cCCCCcEEEeChHHHHhhcChhhhhcccccc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW--PIGKPDVIVSTPAALLNNIDPKRRRRMEFVR 240 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 240 (548)
..+.++||++|+++|+.|+.+.++++....+ +.+....++... ...+++|+|+||+++.+.+.... ..+.
T Consensus 187 -~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~----~~~~ 258 (508)
T 3fho_A 187 -VPKPQAICLAPSRELARQIMDVVTEMGKYTE---VKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQ----LDAR 258 (508)
T ss_dssp -CCSCCEEEECSCHHHHHHHHHHHHHHSTTSS---CCEEC----------CCCCSEEEECHHHHHHHHHTTC----SCCT
T ss_pred -CCCceEEEEECcHHHHHHHHHHHHHhCCccC---eeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCC----cccc
Confidence 2356899999999999999999999876554 444444443322 24478999999999988775432 2367
Q ss_pred CeeEEEEecchhhcc-CChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCC
Q 045757 241 GVKYVVFDEADMLLC-GSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319 (548)
Q Consensus 241 ~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (548)
++++||+||||++.+ .++...+..+...++
T Consensus 259 ~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~------------------------------------------------- 289 (508)
T 3fho_A 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------------------------------------------------- 289 (508)
T ss_dssp TCCEEEECCHHHHTTC--CHHHHHHHHHHSC-------------------------------------------------
T ss_pred CCCEEEEechhhhcccCCcHHHHHHHHHhCC-------------------------------------------------
Confidence 899999999999876 466666666655442
Q ss_pred CCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccccee
Q 045757 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI 399 (548)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (548)
...|++++|||++............ ....+...........+.+...
T Consensus 290 -----------------------------~~~~~i~lSAT~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 290 -----------------------------RNTQIVLFSATFSERVEKYAERFAP----NANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp -----------------------------TTCEEEEEESCCSTHHHHHHHHHST----TCEEECCCCCC----CCCCEEE
T ss_pred -----------------------------cCCeEEEEeCCCCHHHHHHHHHhcC----CCeEEEeccccCCcccceEEEE
Confidence 4689999999997544444433332 2222222222222223333333
Q ss_pred eec-chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEE
Q 045757 400 EVT-VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVF 477 (548)
Q Consensus 400 ~~~-~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vL 477 (548)
... ...+...+.+.+.. ...+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|+ ++.+||
T Consensus 337 ~~~~~~~k~~~l~~ll~~-----~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VL 411 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGL-----LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 411 (508)
T ss_dssp EC--CHHHHHHHHHHHC--------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCC
T ss_pred ECCchHHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 332 23344444444333 35689999999999999999999999999999999999999999999999 677999
Q ss_pred EEeCcccccCCCCCCCEEEEecCC------CCHHHHHHHhcccccCCCcceEEEEeec-CchhHHHHHHHHHHcCC
Q 045757 478 VCTDAAARGIDIPNVSHVIQADFA------TSAVDFLHRVGRTARAGQYGLVTSLYTE-SNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 478 v~T~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~-~~~~~~~~i~~~~~~~~ 546 (548)
|||+++++|+|+|++++||+++.| .|+..|+||+||+||.|+.|.|++|+.+ ++...++.+++.++..+
T Consensus 412 VaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i 487 (508)
T 3fho_A 412 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPI 487 (508)
T ss_dssp EECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCC
T ss_pred EeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999 8899999999999999999999999985 57788889988876554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.1e-47 Score=383.82 Aligned_cols=333 Identities=15% Similarity=0.174 Sum_probs=249.6
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEE
Q 045757 94 RLIRALEN-SGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVL 172 (548)
Q Consensus 94 ~l~~~l~~-~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil 172 (548)
.+.+.+++ .|+ .|+|+|.++++.+++|+|++++||||+|||++|+++++... . .+.++||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~----------------~~~~~lil 70 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R----------------KGKKSALV 70 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-T----------------TTCCEEEE
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-c----------------CCCEEEEE
Confidence 44555654 466 89999999999999999999999999999999999888765 1 36799999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 173 CPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 173 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
+||++|+.|+.+.++++.. .+ +++..++|+.... .+.++|+|+||+++.+++.. ..+.++
T Consensus 71 ~Pt~~L~~q~~~~~~~~~~-~~---~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~------~~~~~~ 140 (414)
T 3oiy_A 71 FPTVTLVKQTLERLQKLAD-EK---VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRF 140 (414)
T ss_dssp ESSHHHHHHHHHHHHHHCC-SS---CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH------HTTCCC
T ss_pred ECCHHHHHHHHHHHHHHcc-CC---ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH------hccccc
Confidence 9999999999999999876 44 7899999987651 24599999999999887742 235689
Q ss_pred eEEEEecchhhcc-----------CChHHH-HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhh
Q 045757 243 KYVVFDEADMLLC-----------GSFQNQ-VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEY 310 (548)
Q Consensus 243 ~~vV~DEah~l~~-----------~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (548)
++||+||||++.+ .+|... +..++..++.. .
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~--------~----------------------------- 183 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG--------K----------------------------- 183 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------C-----------------------------
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccc--------h-----------------------------
Confidence 9999999998765 334333 44444433200 0
Q ss_pred cccCCCCCCCCCccccccccccCcccchhhHHHHhhh--cccceeEEEeec-cCCCccchhhhhhhhcCCCCcccccccc
Q 045757 311 ISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNY--QRSKQYIFVAAT-LPINGKKTAGAVLKQMFPDADWISGNYL 387 (548)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~q~v~~SAT-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (548)
. ...+ ....|++++||| .+............. +.....
T Consensus 184 -----------~---------------------~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~~ 224 (414)
T 3oiy_A 184 -----------I---------------------YERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-------FTVGRL 224 (414)
T ss_dssp -----------C---------------------CCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-------CCSSCC
T ss_pred -----------h---------------------hhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-------cCcCcc
Confidence 0 0000 145899999999 453333222211111 111111
Q ss_pred cccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceE-EecCCCCHHHHHHH
Q 045757 388 HFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY-CYHKDLSLEERAKT 466 (548)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~ 466 (548)
......+.+.+... .+...+.+.+... ++++||||+++..++.+++.|.+.++.+. .+||+ +|.
T Consensus 225 ~~~~~~i~~~~~~~---~~~~~l~~~l~~~------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~-- 289 (414)
T 3oiy_A 225 VSVARNITHVRISS---RSKEKLVELLEIF------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN-- 289 (414)
T ss_dssp CCCCCSEEEEEESS---CCHHHHHHHHHHH------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--
T ss_pred ccccccchheeecc---CHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--
Confidence 12222333333333 3455566655552 48999999999999999999999999998 99985 444
Q ss_pred HHhhc-cCCcEEEE----eCcccccCCCCC-CCEEEEecCC--CCHHHHHHHhcccccCC----CcceEEEEeecCchhH
Q 045757 467 LVNFQ-EKGGVFVC----TDAAARGIDIPN-VSHVIQADFA--TSAVDFLHRVGRTARAG----QYGLVTSLYTESNRDL 534 (548)
Q Consensus 467 ~~~f~-~~~~vLv~----T~~~~~GiDip~-v~~VI~~~~p--~s~~~~~Qr~GR~gR~g----~~G~~i~~~~~~~~~~ 534 (548)
++.|+ ++.+|||| |+++++|+|+|+ +++||++|+| .+..+|+||+||+||.| +.|.+++|+ .+...
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~ 367 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEI 367 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHH
T ss_pred HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHH
Confidence 99999 67799999 999999999999 9999999999 99999999999999988 479999999 77888
Q ss_pred HHHHHHHHH--cCCC
Q 045757 535 VDTIRRAAK--LGQP 547 (548)
Q Consensus 535 ~~~i~~~~~--~~~p 547 (548)
++.+++.++ .+++
T Consensus 368 ~~~l~~~~~~~~~~~ 382 (414)
T 3oiy_A 368 FESLKTRLLLIAEEE 382 (414)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHhccccccc
Confidence 899998887 5543
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.7e-45 Score=396.30 Aligned_cols=332 Identities=18% Similarity=0.225 Sum_probs=259.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
+|+++++++.+.+.+++.||..|+|+|.++++. +.++++++++||||||||++|.+++++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 589999999999999999999999999999998 88999999999999999999999999988755
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccC---CCCcEEEeChHHHHhhcChhhhhcccccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI---GKPDVIVSTPAALLNNIDPKRRRRMEFVR 240 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 240 (548)
+.++||++|+++|+.|+++.++.+.. .| +++..++|+..... ++++|+|+||+++..++... ...++
T Consensus 68 --~~~~l~i~P~raLa~q~~~~~~~l~~-~g---~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~----~~~l~ 137 (720)
T 2zj8_A 68 --GGKAVYIVPLKALAEEKFQEFQDWEK-IG---LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG----SSWIK 137 (720)
T ss_dssp --CSEEEEECSSGGGHHHHHHHTGGGGG-GT---CCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT----CTTGG
T ss_pred --CCEEEEEcCcHHHHHHHHHHHHHHHh-cC---CEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcC----hhhhh
Confidence 57899999999999999999965543 34 78888888765432 47899999999998877543 23478
Q ss_pred CeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCC
Q 045757 241 GVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGD 320 (548)
Q Consensus 241 ~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (548)
++++||+||+|++.++.++..++.++..++
T Consensus 138 ~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-------------------------------------------------- 167 (720)
T 2zj8_A 138 DVKILVADEIHLIGSRDRGATLEVILAHML-------------------------------------------------- 167 (720)
T ss_dssp GEEEEEEETGGGGGCTTTHHHHHHHHHHHB--------------------------------------------------
T ss_pred cCCEEEEECCcccCCCcccHHHHHHHHHhh--------------------------------------------------
Confidence 899999999999988889999988887664
Q ss_pred CCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCc--ccccce
Q 045757 321 SDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNP--RLKEKW 398 (548)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~ 398 (548)
...|++++|||++. ...+.. ++.... +.......... ......
T Consensus 168 ----------------------------~~~~ii~lSATl~n-~~~~~~-~l~~~~-----~~~~~rp~~l~~~~~~~~~ 212 (720)
T 2zj8_A 168 ----------------------------GKAQIIGLSATIGN-PEELAE-WLNAEL-----IVSDWRPVKLRRGVFYQGF 212 (720)
T ss_dssp ----------------------------TTBEEEEEECCCSC-HHHHHH-HTTEEE-----EECCCCSSEEEEEEEETTE
T ss_pred ----------------------------cCCeEEEEcCCcCC-HHHHHH-HhCCcc-----cCCCCCCCcceEEEEeCCe
Confidence 25899999999974 222222 222100 00000000000 000000
Q ss_pred eee-c-----chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------------------------
Q 045757 399 IEV-T-----VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA------------------------- 447 (548)
Q Consensus 399 ~~~-~-----~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~------------------------- 447 (548)
... . .......+.+.+ ..++++||||++++.++.++..|.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 213 VTWEDGSIDRFSSWEELVYDAI-------RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp EEETTSCEEECSSTTHHHHHHH-------HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred eeccccchhhhhHHHHHHHHHH-------hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 111 0 122233333332 24689999999999999999999753
Q ss_pred --------CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ec----CCCCHHHHHHH
Q 045757 448 --------GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----AD----FATSAVDFLHR 510 (548)
Q Consensus 448 --------~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~----~p~s~~~~~Qr 510 (548)
...+..+||+|+.++|..+++.|+ ++.+|||||+++++|||+|++++||+ || .|.|..+|.||
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr 365 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQM 365 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHH
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHH
Confidence 124899999999999999999999 66799999999999999999999998 66 58999999999
Q ss_pred hcccccCC--CcceEEEEeecCch
Q 045757 511 VGRTARAG--QYGLVTSLYTESNR 532 (548)
Q Consensus 511 ~GR~gR~g--~~G~~i~~~~~~~~ 532 (548)
+|||||.| ..|.|+.++++.+.
T Consensus 366 ~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 366 LGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp HTTBCCTTTCSEEEEEEECSSSCH
T ss_pred HhhcCCCCCCCCceEEEEecCccH
Confidence 99999998 47999999999873
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.3e-45 Score=394.81 Aligned_cols=342 Identities=18% Similarity=0.179 Sum_probs=255.3
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
..+|+++++++.+.+.+++.||..|+|+|.++++. +.++++++++||||||||++|.+++++.+...
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------ 74 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------ 74 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------
Confidence 45799999999999999999999999999999999 78899999999999999999999999887643
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccC---CCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI---GKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
+.+++|++|+++|+.|+++.++.+. ..| +++...+|+..... .+++|+|+||+++..++... ...
T Consensus 75 ----~~~il~i~P~r~La~q~~~~~~~~~-~~g---~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~----~~~ 142 (715)
T 2va8_A 75 ----GGKAIYVTPLRALTNEKYLTFKDWE-LIG---FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR----PEW 142 (715)
T ss_dssp ----CSEEEEECSCHHHHHHHHHHHGGGG-GGT---CCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC----CGG
T ss_pred ----CCeEEEEeCcHHHHHHHHHHHHHhh-cCC---CEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC----hhH
Confidence 5799999999999999999996443 334 77888888765432 37899999999998877543 234
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCC
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFE 318 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (548)
++++++||+||+|++.+..++..++.++.+++
T Consensus 143 l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------------------------------------------------ 174 (715)
T 2va8_A 143 LNEVNYFVLDELHYLNDPERGPVVESVTIRAK------------------------------------------------ 174 (715)
T ss_dssp GGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------------------------------------------------
T ss_pred hhccCEEEEechhhcCCcccchHHHHHHHhcc------------------------------------------------
Confidence 78899999999999988788888888876653
Q ss_pred CCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcC-C-CCcccc--cccccccCccc
Q 045757 319 GDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMF-P-DADWIS--GNYLHFHNPRL 394 (548)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~-~-~~~~~~--~~~~~~~~~~~ 394 (548)
..|++++|||++. ...+.. ++.... . ....+. ...........
T Consensus 175 -------------------------------~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~ 221 (715)
T 2va8_A 175 -------------------------------RRNLLALSATISN-YKQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKK 221 (715)
T ss_dssp -------------------------------TSEEEEEESCCTT-HHHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTT
T ss_pred -------------------------------cCcEEEEcCCCCC-HHHHHH-HhCCCccCCCCCCCCceEEEEecCCccc
Confidence 5899999999973 233322 222100 0 000000 00000000000
Q ss_pred ccceeeecch----hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcC----------------------
Q 045757 395 KEKWIEVTVD----TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAG---------------------- 448 (548)
Q Consensus 395 ~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~---------------------- 448 (548)
.......... .........+.+.+ ..++++||||++++.++.+++.|.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (715)
T 2va8_A 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEE 298 (715)
T ss_dssp EEEEEETTSCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCS
T ss_pred ceeeecCcchhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhh
Confidence 0000000000 00122233333332 357899999999999999999998642
Q ss_pred --------------CceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ec-------CCC
Q 045757 449 --------------IECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----AD-------FAT 502 (548)
Q Consensus 449 --------------~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~-------~p~ 502 (548)
..+..+||+|+.++|..+++.|+ ++.+|||||+++++|||+|++++||+ || .|.
T Consensus 299 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 299 GGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp SCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred ccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 24899999999999999999999 66799999999999999999999999 88 799
Q ss_pred CHHHHHHHhcccccCCC--cceEEEEeecCch
Q 045757 503 SAVDFLHRVGRTARAGQ--YGLVTSLYTESNR 532 (548)
Q Consensus 503 s~~~~~Qr~GR~gR~g~--~G~~i~~~~~~~~ 532 (548)
|..+|.||+|||||.|. .|.|+.++++.+.
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999999884 7999999988763
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.6e-45 Score=393.85 Aligned_cols=338 Identities=20% Similarity=0.222 Sum_probs=255.0
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 85 TWKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 85 ~~~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
+|++++ +++.+.+.+++.||..|+|+|.++++.+.+|++++++||||||||++|.+++++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------------
Confidence 588898 9999999999999999999999999999999999999999999999999999988742
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccc
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFV 239 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 239 (548)
+.++||++|+++|+.|+++.++.+. ..| +++..++|+.... ..+++|+|+||+++..++... ..++
T Consensus 68 ---~~~~l~i~P~r~La~q~~~~~~~~~-~~g---~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~----~~~l 136 (702)
T 2p6r_A 68 ---GGKSLYVVPLRALAGEKYESFKKWE-KIG---LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNR----ASWI 136 (702)
T ss_dssp ---TCCEEEEESSHHHHHHHHHHHTTTT-TTT---CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTT----CSGG
T ss_pred ---CCcEEEEeCcHHHHHHHHHHHHHHH-hcC---CEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcC----hhHH
Confidence 4789999999999999999996443 334 7788888876543 347999999999998877543 2347
Q ss_pred cCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCC
Q 045757 240 RGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEG 319 (548)
Q Consensus 240 ~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (548)
+++++||+||+|++.+++++..++.++..++.
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~------------------------------------------------ 168 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRR------------------------------------------------ 168 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH------------------------------------------------
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHh------------------------------------------------
Confidence 88999999999999988899988888876641
Q ss_pred CCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcc--c-cc
Q 045757 320 DSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPR--L-KE 396 (548)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~ 396 (548)
.....|++++|||++. ...+.. ++... .+........... . ..
T Consensus 169 ---------------------------~~~~~~ii~lSATl~n-~~~~~~-~l~~~-----~~~~~~r~~~l~~~~~~~~ 214 (702)
T 2p6r_A 169 ---------------------------MNKALRVIGLSATAPN-VTEIAE-WLDAD-----YYVSDWRPVPLVEGVLCEG 214 (702)
T ss_dssp ---------------------------HCTTCEEEEEECCCTT-HHHHHH-HTTCE-----EEECCCCSSCEEEEEECSS
T ss_pred ---------------------------cCcCceEEEECCCcCC-HHHHHH-HhCCC-----cccCCCCCccceEEEeeCC
Confidence 1246899999999973 233222 22210 0000000000000 0 00
Q ss_pred ceeeecchh---hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--------------------------
Q 045757 397 KWIEVTVDT---QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-------------------------- 447 (548)
Q Consensus 397 ~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------- 447 (548)
......... +.....+.+.+.+ ..++++||||++++.++.+++.|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 215 TLELFDGAFSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred eeeccCcchhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 000011000 0000222222222 24789999999999999999998753
Q ss_pred ----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ec---CCCCHHHHHHHhcccc
Q 045757 448 ----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----AD---FATSAVDFLHRVGRTA 515 (548)
Q Consensus 448 ----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~---~p~s~~~~~Qr~GR~g 515 (548)
+..+..+||+|+.++|..+++.|+ ++.+|||||+++++|||+|++++||+ || .|.|..+|.||+||||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 235889999999999999999999 66799999999999999999999999 66 6899999999999999
Q ss_pred cCC--CcceEEEEeecCch
Q 045757 516 RAG--QYGLVTSLYTESNR 532 (548)
Q Consensus 516 R~g--~~G~~i~~~~~~~~ 532 (548)
|.| ..|.|+.++++.+.
T Consensus 372 R~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp CTTTCSCEEEEEECCGGGH
T ss_pred CCCCCCCceEEEEecCccH
Confidence 998 47999999998874
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-44 Score=380.15 Aligned_cols=336 Identities=20% Similarity=0.292 Sum_probs=195.9
Q ss_pred CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV 182 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~ 182 (548)
+..+|+|+|.++++.+++|+++++++|||+|||++|++|+++.+... ....+.++|||+|+++|+.|+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~~~lil~P~~~L~~q~ 71 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM------------PAGRKAKVVFLATKVPVYEQQ 71 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------CSSCCCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------cccCCCeEEEEeCCHHHHHHH
Confidence 34589999999999999999999999999999999999999888543 112267899999999999999
Q ss_pred HHHHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccC
Q 045757 183 VRMANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCG 256 (548)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~ 256 (548)
.+.++++....+ +++..++|+..... .+++|+|+||++|.+.+.... ...+.++++||+||||++.++
T Consensus 72 ~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~~vViDEah~~~~~ 145 (556)
T 4a2p_A 72 KNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---LTSLSIFTLMIFDECHNTTGN 145 (556)
T ss_dssp HHHHHHHHGGGT---CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS---CCCSTTCSEEEEETGGGCSTT
T ss_pred HHHHHHHhcccC---ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc---ccccccCCEEEEECCcccCCc
Confidence 999999987766 78888888875443 468999999999998875432 114778999999999999877
Q ss_pred ChHHHHH-HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcc
Q 045757 257 SFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSI 335 (548)
Q Consensus 257 ~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (548)
+....+. .++....
T Consensus 146 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 160 (556)
T 4a2p_A 146 HPYNVLMTRYLEQKF----------------------------------------------------------------- 160 (556)
T ss_dssp SHHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred chHHHHHHHHHHhhh-----------------------------------------------------------------
Confidence 6543332 1111100
Q ss_pred cchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhh-------hcCCC-Ccccccc--ccc--ccCcccccc------
Q 045757 336 KKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK-------QMFPD-ADWISGN--YLH--FHNPRLKEK------ 397 (548)
Q Consensus 336 ~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~-------~~~~~-~~~~~~~--~~~--~~~~~~~~~------ 397 (548)
.......+++++|||+...........+. ..... ....... ... ...+.....
T Consensus 161 ---------~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
T 4a2p_A 161 ---------NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 231 (556)
T ss_dssp ---------CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCS
T ss_pred ---------cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCc
Confidence 00124578999999996543222221111 00000 0000000 000 000000000
Q ss_pred -------------------------------------------ee-----------------------------------
Q 045757 398 -------------------------------------------WI----------------------------------- 399 (548)
Q Consensus 398 -------------------------------------------~~----------------------------------- 399 (548)
+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred -------------------------------------------------------eecchhhHHHHHHHHHHHhhccCCC
Q 045757 400 -------------------------------------------------------EVTVDTQVDALIEAVKERLEFGAET 424 (548)
Q Consensus 400 -------------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~ 424 (548)
......|...+.+.+.+.... ..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~-~~~ 390 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY-NPQ 390 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC-CCC
Confidence 000123444455555443221 457
Q ss_pred CcEEEEeCChhHHHHHHHHHHHc------------CCceEEecCCCCHHHHHHHHHhhcc-C-CcEEEEeCcccccCCCC
Q 045757 425 SRTMVFANTVDAVYAVTKILKTA------------GIECYCYHKDLSLEERAKTLVNFQE-K-GGVFVCTDAAARGIDIP 490 (548)
Q Consensus 425 ~~~lVF~~s~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~-~~vLv~T~~~~~GiDip 490 (548)
.++||||+++..++.+++.|.+. |.....+||+|+..+|.++++.|+. + .+|||||+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 89999999999999999999876 4556677888999999999999984 4 59999999999999999
Q ss_pred CCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 491 NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 491 ~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
++++||+||+|+|+..|+||+|| ||. +.|.++.|+++.+.+
T Consensus 471 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 471 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999999999999 998 889999999997654
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=399.17 Aligned_cols=339 Identities=16% Similarity=0.166 Sum_probs=250.7
Q ss_pred CCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCC
Q 045757 83 NVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEP 162 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~ 162 (548)
...|..+++++.+...+...+...|+|+|.++++.+.+|++++++||||||||++|.+|++..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------------- 226 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------- 226 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------------
Confidence 345777777777776666667778999999999999999999999999999999999999988732
Q ss_pred CCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCe
Q 045757 163 TPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGV 242 (548)
Q Consensus 163 ~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~ 242 (548)
+.++||++|+++|+.|+++.+.++.. .+..++|+... ..+++|+|+||++|.+++.... ..+.++
T Consensus 227 ---g~rvlvl~PtraLa~Q~~~~l~~~~~-------~VglltGd~~~-~~~~~IlV~Tpe~L~~~L~~~~----~~l~~l 291 (1108)
T 3l9o_A 227 ---KQRVIYTSPIKALSNQKYRELLAEFG-------DVGLMTGDITI-NPDAGCLVMTTEILRSMLYRGS----EVMREV 291 (1108)
T ss_dssp ---TCEEEEEESSHHHHHHHHHHHHHHTS-------SEEEECSSCBC-CCSCSEEEEEHHHHHHHHHHCS----SHHHHE
T ss_pred ---CCeEEEEcCcHHHHHHHHHHHHHHhC-------CccEEeCcccc-CCCCCEEEeChHHHHHHHHcCc----cccccC
Confidence 57899999999999999999998874 45557776654 4568999999999998875432 347789
Q ss_pred eEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCC
Q 045757 243 KYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSD 322 (548)
Q Consensus 243 ~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (548)
++|||||||++.+++++..+..++..++
T Consensus 292 ~lVVIDEaH~l~d~~rg~~~e~ii~~l~---------------------------------------------------- 319 (1108)
T 3l9o_A 292 AWVIFDEVHYMRDKERGVVWEETIILLP---------------------------------------------------- 319 (1108)
T ss_dssp EEEEEETGGGTTSHHHHHHHHHHHHHSC----------------------------------------------------
T ss_pred CEEEEhhhhhccccchHHHHHHHHHhcC----------------------------------------------------
Confidence 9999999999998899998888887664
Q ss_pred ccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCc-ccccccccccCcccccce---
Q 045757 323 VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDAD-WISGNYLHFHNPRLKEKW--- 398 (548)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 398 (548)
...|++++|||++.. ..+. .++........ .+...... ..+.++.
T Consensus 320 --------------------------~~~qvl~lSATipn~-~e~a-~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~ 368 (1108)
T 3l9o_A 320 --------------------------DKVRYVFLSATIPNA-MEFA-EWICKIHSQPCHIVYTNFRP---TPLQHYLFPA 368 (1108)
T ss_dssp --------------------------TTSEEEEEECSCSSC-HHHH-HHHHHHTCSCEEEEEECCCS---SCEEEEEEET
T ss_pred --------------------------CCceEEEEcCCCCCH-HHHH-HHHHhhcCCCeEEEecCCCc---ccceEEEeec
Confidence 468999999998743 2222 22222111110 11000000 0000000
Q ss_pred ------eeecc----------------------------------------------hhhHHHHHHHHHHHhhccCCCCc
Q 045757 399 ------IEVTV----------------------------------------------DTQVDALIEAVKERLEFGAETSR 426 (548)
Q Consensus 399 ------~~~~~----------------------------------------------~~~~~~l~~~l~~~~~~~~~~~~ 426 (548)
..+.. ...+..++..+.. ....+
T Consensus 369 ~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-----~~~~~ 443 (1108)
T 3l9o_A 369 HGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-----KKYNP 443 (1108)
T ss_dssp TSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-----TTCCC
T ss_pred CCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-----cCCCC
Confidence 00000 1122222222222 34679
Q ss_pred EEEEeCChhHHHHHHHHHHHcCC---------------------------------------ceEEecCCCCHHHHHHHH
Q 045757 427 TMVFANTVDAVYAVTKILKTAGI---------------------------------------ECYCYHKDLSLEERAKTL 467 (548)
Q Consensus 427 ~lVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~ 467 (548)
+||||+++..|+.++..|...++ .+..+||+|+..+|..++
T Consensus 444 vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 444 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 523 (1108)
T ss_dssp EEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999998865322 278999999999999999
Q ss_pred Hhhc-cCCcEEEEeCcccccCCCCCCCEEEEecC--------CCCHHHHHHHhcccccCC--CcceEEEEeecC-chhHH
Q 045757 468 VNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADF--------ATSAVDFLHRVGRTARAG--QYGLVTSLYTES-NRDLV 535 (548)
Q Consensus 468 ~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~--------p~s~~~~~Qr~GR~gR~g--~~G~~i~~~~~~-~~~~~ 535 (548)
+.|+ +..+|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +...+
T Consensus 524 ~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~ 603 (1108)
T 3l9o_A 524 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 603 (1108)
T ss_dssp HHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHH
T ss_pred HHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHH
Confidence 9999 77799999999999999999999997765 447888999999999999 679999999876 33334
Q ss_pred HHH
Q 045757 536 DTI 538 (548)
Q Consensus 536 ~~i 538 (548)
..+
T Consensus 604 ~~l 606 (1108)
T 3l9o_A 604 KGM 606 (1108)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6e-44 Score=377.79 Aligned_cols=339 Identities=19% Similarity=0.280 Sum_probs=223.3
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
+|+|+|.++++.+++|+++++++|||+|||++|++|+++.+... ....+.++|||+||++|+.|+.+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~~~lil~P~~~L~~q~~~~ 71 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF------------PCGQKGKVVFFANQIPVYEQQATV 71 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------CSSCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------ccCCCCEEEEEeCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988653 112367899999999999999999
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
+++++...+ +++..++|+..... .+++|+|+||+++.+.+.... ...+.++++||+||||++.+.+..
T Consensus 72 ~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~~vViDEah~~~~~~~~ 145 (555)
T 3tbk_A 72 FSRYFERLG---YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA---IPSLSVFTLMIFDECHNTSKNHPY 145 (555)
T ss_dssp HHHHHHTTT---CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS---SCCGGGCSEEEETTGGGCSTTCHH
T ss_pred HHHHhccCC---cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc---ccccccCCEEEEECccccCCcchH
Confidence 999987766 78889999886543 368999999999988875432 114678999999999999876532
Q ss_pred HHH-HHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccch
Q 045757 260 NQV-IRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKK 338 (548)
Q Consensus 260 ~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (548)
..+ ...+....
T Consensus 146 ~~~~~~~~~~~~-------------------------------------------------------------------- 157 (555)
T 3tbk_A 146 NQIMFRYLDHKL-------------------------------------------------------------------- 157 (555)
T ss_dssp HHHHHHHHHHHT--------------------------------------------------------------------
T ss_pred HHHHHHHHHhhh--------------------------------------------------------------------
Confidence 222 12221100
Q ss_pred hhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhc------CC-C-Ccccccc--cc--cccCcccccc---------
Q 045757 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQM------FP-D-ADWISGN--YL--HFHNPRLKEK--------- 397 (548)
Q Consensus 339 ~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~------~~-~-~~~~~~~--~~--~~~~~~~~~~--------- 397 (548)
........+++++|||+............... .. . ....... .. ....+.....
T Consensus 158 -----~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T 3tbk_A 158 -----GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNT 232 (555)
T ss_dssp -----SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCH
T ss_pred -----ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccCh
Confidence 00011357899999999654422221111100 00 0 0000000 00 0000000000
Q ss_pred -----------------------------------------ee-------------------------------------
Q 045757 398 -----------------------------------------WI------------------------------------- 399 (548)
Q Consensus 398 -----------------------------------------~~------------------------------------- 399 (548)
+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (555)
T 3tbk_A 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred -----------------------------------------------------eecchhhHHHHHHHHHHHhhccCCCCc
Q 045757 400 -----------------------------------------------------EVTVDTQVDALIEAVKERLEFGAETSR 426 (548)
Q Consensus 400 -----------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~ 426 (548)
......+...+.+.+.+.... ..+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-~~~~k 391 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL-KPETK 391 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH-CTTCC
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc-CCCce
Confidence 000123445555555544322 34689
Q ss_pred EEEEeCChhHHHHHHHHHHHcC------------CceEEecCCCCHHHHHHHHHhhcc--CCcEEEEeCcccccCCCCCC
Q 045757 427 TMVFANTVDAVYAVTKILKTAG------------IECYCYHKDLSLEERAKTLVNFQE--KGGVFVCTDAAARGIDIPNV 492 (548)
Q Consensus 427 ~lVF~~s~~~~~~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~--~~~vLv~T~~~~~GiDip~v 492 (548)
+||||+++..++.+++.|.+.+ .....+||+|+.++|.++++.|+. +.+|||||+++++|||+|++
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v 471 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAEC 471 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSC
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccC
Confidence 9999999999999999999874 344556679999999999999994 45999999999999999999
Q ss_pred CEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHH
Q 045757 493 SHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 493 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i 538 (548)
++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 472 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 472 NLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999 998 89999999999877655555
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.6e-44 Score=386.97 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=214.9
Q ss_pred HHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 96 IRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 96 ~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
..++..+|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+... +...++++|||+||
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~------------~~~~~~~~lvl~Pt 70 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF------------PQGQKGKVVFFANQ 70 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS------------CTTCCCCEEEECSS
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhC------------ccCCCCeEEEEECC
Confidence 356678899999999999999999999999999999999999999999887653 11124789999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEec
Q 045757 176 VVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249 (548)
Q Consensus 176 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DE 249 (548)
++|+.|+.+.++++....+ +++..++|+..... .+++|+|+||++|.+.+..... ..+.++++||+||
T Consensus 71 ~~L~~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~---~~l~~~~~vViDE 144 (696)
T 2ykg_A 71 IPVYEQNKSVFSKYFERHG---YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI---PSLSIFTLMIFDE 144 (696)
T ss_dssp HHHHHHHHHHHHHHTTTTT---CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS---CCGGGCSEEEEET
T ss_pred HHHHHHHHHHHHHHhccCC---ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc---cccccccEEEEeC
Confidence 9999999999999987655 78888999875432 4789999999999888754321 1367899999999
Q ss_pred chhhccCChHHHHH-HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcccccc
Q 045757 250 ADMLLCGSFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTE 328 (548)
Q Consensus 250 ah~l~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (548)
||++.+.+....+. .++...
T Consensus 145 aH~~~~~~~~~~i~~~~l~~~----------------------------------------------------------- 165 (696)
T 2ykg_A 145 CHNTSKQHPYNMIMFNYLDQK----------------------------------------------------------- 165 (696)
T ss_dssp GGGCSTTCHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred CCcccCcccHHHHHHHHHHHh-----------------------------------------------------------
Confidence 99987655322221 121110
Q ss_pred ccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhh----------------------------------
Q 045757 329 ETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQ---------------------------------- 374 (548)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~---------------------------------- 374 (548)
+........+++++|||+...........+..
T Consensus 166 --------------~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~ 231 (696)
T 2ykg_A 166 --------------LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 231 (696)
T ss_dssp --------------HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEE
T ss_pred --------------hcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeE
Confidence 00111245899999999863221100000000
Q ss_pred ----------------------------cCCCCcccccccc-c-------------------------------------
Q 045757 375 ----------------------------MFPDADWISGNYL-H------------------------------------- 388 (548)
Q Consensus 375 ----------------------------~~~~~~~~~~~~~-~------------------------------------- 388 (548)
...+...+..... .
T Consensus 232 ~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 311 (696)
T 2ykg_A 232 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 311 (696)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHH
T ss_pred EecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHH
Confidence 0000000000000 0
Q ss_pred ------------------------------------ccCcccccceee-------------e---cchhhHHHHHHHHHH
Q 045757 389 ------------------------------------FHNPRLKEKWIE-------------V---TVDTQVDALIEAVKE 416 (548)
Q Consensus 389 ------------------------------------~~~~~~~~~~~~-------------~---~~~~~~~~l~~~l~~ 416 (548)
.....+.+.+.. . ....+...+.+.+.+
T Consensus 312 ~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 312 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 000000000000 0 123345555555554
Q ss_pred HhhccCCCCcEEEEeCChhHHHHHHHHHHHcC----CceEEe--------cCCCCHHHHHHHHHhhcc--CCcEEEEeCc
Q 045757 417 RLEFGAETSRTMVFANTVDAVYAVTKILKTAG----IECYCY--------HKDLSLEERAKTLVNFQE--KGGVFVCTDA 482 (548)
Q Consensus 417 ~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~--~~~vLv~T~~ 482 (548)
... ...++++||||+++..++.+++.|.+.+ +.+..+ |++|+.++|.++++.|+. +.+|||||++
T Consensus 392 ~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 392 EYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp HHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred Hhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 321 1356799999999999999999999988 788888 559999999999999984 5699999999
Q ss_pred ccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHH
Q 045757 483 AARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTI 538 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i 538 (548)
+++|||+|++++||+||+|.|+.+|+||+|| ||. +.|.++.++++.+....+.+
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999999999 998 78999999998877555544
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.2e-43 Score=390.32 Aligned_cols=329 Identities=16% Similarity=0.193 Sum_probs=251.5
Q ss_pred HHH-HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 97 RAL-ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 97 ~~l-~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
+.+ +.+||. | ++|.++++.+++|+|++++||||||||+ |.+|++..+... +.++|||+||
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------------~~~~lil~Pt 108 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------------GKRCYVIFPT 108 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------------SCCEEEEESC
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------------CCeEEEEecc
Confidence 444 457998 9 9999999999999999999999999998 899998887543 6799999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCcE----EEEEEeCCCCccC--------CCCcEEEeChHHHHhhcChhhhhccccccCee
Q 045757 176 VVLCEQVVRMANALSADNGEPLV----RAVAVCGGQGWPI--------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243 (548)
Q Consensus 176 ~~L~~q~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~--------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~ 243 (548)
++|+.|+.+.+++++...+ + ++..++|+..... ..++|+|+||++|.+++.. +.+++
T Consensus 109 reLa~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--------L~~l~ 177 (1054)
T 1gku_B 109 SLLVIQAAETIRKYAEKAG---VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--------LGHFD 177 (1054)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--------SCCCS
T ss_pred HHHHHHHHHHHHHHHhhcC---CCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--------hccCC
Confidence 9999999999999987766 5 7888889876532 2399999999999988753 56899
Q ss_pred EEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCc
Q 045757 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323 (548)
Q Consensus 244 ~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (548)
+||+||||++++ ++..+..++..+.+.....
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~----------------------------------------------- 208 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLK----------------------------------------------- 208 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETT-----------------------------------------------
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhh-----------------------------------------------
Confidence 999999999987 5667777776553110000
Q ss_pred cccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc
Q 045757 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV 403 (548)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (548)
........|.+++|||++.. ......++...... ...........+.+.+. .
T Consensus 209 --------------------~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i----~v~~~~~~~~~i~~~~~---~ 260 (1054)
T 1gku_B 209 --------------------TKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNF----DIGSSRITVRNVEDVAV---N 260 (1054)
T ss_dssp --------------------TTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCC----CCSCCEECCCCEEEEEE---S
T ss_pred --------------------hhhcccCCceEEEEecCCCc-hhHHHHHhhcceEE----EccCcccCcCCceEEEe---c
Confidence 01113467899999999987 65555554433221 11111122223333333 2
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEE---
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVC--- 479 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~--- 479 (548)
..+...+.+.+.. .++++||||++++.++.+++.|++. +.+..+||++. ++++.|+ ++.+||||
T Consensus 261 ~~k~~~L~~ll~~------~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas 328 (1054)
T 1gku_B 261 DESISTLSSILEK------LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAH 328 (1054)
T ss_dssp CCCTTTTHHHHTT------SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC
T ss_pred hhHHHHHHHHHhh------cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecC
Confidence 3344444444432 2578999999999999999999988 99999999983 7788999 77899999
Q ss_pred -eCcccccCCCCCC-CEEEEecCC--------------------------------------------------------
Q 045757 480 -TDAAARGIDIPNV-SHVIQADFA-------------------------------------------------------- 501 (548)
Q Consensus 480 -T~~~~~GiDip~v-~~VI~~~~p-------------------------------------------------------- 501 (548)
|+++++|||+|+| ++||++|.|
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER 408 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSC
T ss_pred CCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999996 999999999
Q ss_pred ---------------CCHHHHHHHhcccccCCCcc--eEEEEeecCchhHHHHHHHHHHc
Q 045757 502 ---------------TSAVDFLHRVGRTARAGQYG--LVTSLYTESNRDLVDTIRRAAKL 544 (548)
Q Consensus 502 ---------------~s~~~~~Qr~GR~gR~g~~G--~~i~~~~~~~~~~~~~i~~~~~~ 544 (548)
.|..+|+||+||+||.|..| .+++++..++...++.|++.++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 409 PQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 79999999999999988776 48999999999999999988773
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-43 Score=370.07 Aligned_cols=374 Identities=18% Similarity=0.205 Sum_probs=239.6
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|+++|..++|.+++|+ |.+|+||+|||++|.+|++...+ .+..++||+||++||.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------~g~~vlVltptreLA~ 138 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------TGKGVHVVTVNEYLAS 138 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----------------TSSCEEEEESSHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----------------cCCCEEEEeCCHHHHH
Confidence 5799 99999999999999998 99999999999999999985442 2467999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l 253 (548)
|..+++..+....| +++.+++||.+.. ..+++|+|+||++| .+++...-. .....++.+.++|+||||.|
T Consensus 139 qd~e~~~~l~~~lg---l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 139 RDAEQMGKIFEFLG---LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 215 (844)
T ss_dssp HHHHHHHHHHHHTT---CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred HHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhh
Confidence 99999999998888 8999999986543 24699999999999 555433211 11234678999999999998
Q ss_pred c-cCC---------------hHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCc--hhhhhhhhhhcccCC
Q 045757 254 L-CGS---------------FQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDL--QDEENLQDEYISDEG 315 (548)
Q Consensus 254 ~-~~~---------------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 315 (548)
+ +.. |...+..++..++.+. ....+ ..-....+ ......+. ++.
T Consensus 216 LiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~-------------~y~vd-~k~rq~~lt~~g~~~~e~-~~~--- 277 (844)
T 1tf5_A 216 LIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEK-------------DYTYD-IKTKAVQLTEEGMTKAEK-AFG--- 277 (844)
T ss_dssp HTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSS-------------SBCCC-SSSCCCCBCHHHHHHHHH-HTT---
T ss_pred hhhccccchhhcCCcccchhHHHHHHHHHHhCcccc-------------cceec-cccceEEecHHHHHHHHH-HhC---
Confidence 7 553 6677777877664210 00000 00000000 00000000 000
Q ss_pred CCCCCCCccccccccccCcccchhhHH-H------HhhhcccceeEE-------Ee-eccCC-Cccchhh---hhh----
Q 045757 316 NFEGDSDVEGLTEETKSGSIKKKDWRR-V------RKNYQRSKQYIF-------VA-ATLPI-NGKKTAG---AVL---- 372 (548)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~q~v~-------~S-AT~~~-~~~~~~~---~~l---- 372 (548)
+.. .-..+...|.. + ...+.++..++. +- .|-.. .++.... ..+
T Consensus 278 ----------i~~---Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake 344 (844)
T 1tf5_A 278 ----------IDN---LFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKE 344 (844)
T ss_dssp ----------CSC---TTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHT
T ss_pred ----------ccc---cCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcc
Confidence 000 00000000000 0 011111222221 00 00000 0000000 000
Q ss_pred ----------------hhcC---CCCccccc-----------------ccccccCccc---ccceeeecchhhHHHHHHH
Q 045757 373 ----------------KQMF---PDADWISG-----------------NYLHFHNPRL---KEKWIEVTVDTQVDALIEA 413 (548)
Q Consensus 373 ----------------~~~~---~~~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 413 (548)
..++ +...-+.+ .....+.+.. ....+......|...+.+.
T Consensus 345 ~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~ 424 (844)
T 1tf5_A 345 GLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAED 424 (844)
T ss_dssp TCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHH
T ss_pred cceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHH
Confidence 0000 00000000 0000011111 1123445666778888777
Q ss_pred HHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCC---
Q 045757 414 VKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP--- 490 (548)
Q Consensus 414 l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip--- 490 (548)
+.... ..+.++||||+|+..++.+++.|.+.|+.+..+||++...+|..+.+.|+ ...|+|||++++||+||+
T Consensus 425 i~~~~---~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~-~g~VlIATdmAgRG~DI~l~~ 500 (844)
T 1tf5_A 425 VAQRY---MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ-KGAVTIATNMAGRGTDIKLGE 500 (844)
T ss_dssp HHHHH---HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS-TTCEEEEETTSSTTCCCCCCT
T ss_pred HHHHH---hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC-CCeEEEeCCccccCcCccccc
Confidence 76532 24678999999999999999999999999999999998777765554444 347999999999999999
Q ss_pred -----CCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 491 -----NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 491 -----~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
++.+||+++.|.|...|.||+||+||+|.+|.+++|++..|.
T Consensus 501 ~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 501 GVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred hhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 788999999999999999999999999999999999998763
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.4e-43 Score=382.35 Aligned_cols=339 Identities=19% Similarity=0.272 Sum_probs=201.2
Q ss_pred HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 100 ~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
..+|+..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... ....++++|||+|+++|+
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------~~~~~~~~Lvl~Pt~~L~ 309 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM------------PAGRKAKVVFLATKVPVY 309 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------CSSCCCCEEEECSSHHHH
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------cccCCCeEEEEeCCHHHH
Confidence 34578899999999999999999999999999999999999999988643 112367899999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
.|+.+.+++++...+ +++..++|+..... .+++|+|+||++|.+.+.... ...+.++++||+||||++
T Consensus 310 ~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~~~~~~~~iViDEaH~~ 383 (797)
T 4a2q_A 310 EQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---LTSLSIFTLMIFDECHNT 383 (797)
T ss_dssp HHHHHHHHHHHGGGT---CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS---CCCGGGCSEEEETTGGGC
T ss_pred HHHHHHHHHhcccCC---ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc---ccccccCCEEEEECcccc
Confidence 999999999987666 88899999876543 478999999999988875432 114678999999999998
Q ss_pred ccCChHHHHH-HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcccccccccc
Q 045757 254 LCGSFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKS 332 (548)
Q Consensus 254 ~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (548)
.+.+....+. .++...
T Consensus 384 ~~~~~~~~i~~~~~~~~--------------------------------------------------------------- 400 (797)
T 4a2q_A 384 TGNHPYNVLMTRYLEQK--------------------------------------------------------------- 400 (797)
T ss_dssp STTSHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCccHHHHHHHHHHHh---------------------------------------------------------------
Confidence 8765433321 111110
Q ss_pred CcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhh-------------------------hcCCCCc--ccccc
Q 045757 333 GSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK-------------------------QMFPDAD--WISGN 385 (548)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~-------------------------~~~~~~~--~~~~~ 385 (548)
........+++++|||+...........+. .+..... .....
T Consensus 401 -----------~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~ 469 (797)
T 4a2q_A 401 -----------FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (797)
T ss_dssp -----------HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECC
T ss_pred -----------hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecC
Confidence 000124578999999996433211111100 0000000 00000
Q ss_pred c-cc-----------------------------ccCc--ccc--ccee--------------------------------
Q 045757 386 Y-LH-----------------------------FHNP--RLK--EKWI-------------------------------- 399 (548)
Q Consensus 386 ~-~~-----------------------------~~~~--~~~--~~~~-------------------------------- 399 (548)
. .. .... ... ..+.
T Consensus 470 ~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 549 (797)
T 4a2q_A 470 RRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (797)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 0 00 0000 000 0000
Q ss_pred ----------------------------------------------------------eecchhhHHHHHHHHHHHhhcc
Q 045757 400 ----------------------------------------------------------EVTVDTQVDALIEAVKERLEFG 421 (548)
Q Consensus 400 ----------------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~ 421 (548)
......|...+.+.+.+.+..
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~- 628 (797)
T 4a2q_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY- 628 (797)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc-
Confidence 000122444444444443221
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc------------CCceEEecCCCCHHHHHHHHHhhcc--CCcEEEEeCcccccC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA------------GIECYCYHKDLSLEERAKTLVNFQE--KGGVFVCTDAAARGI 487 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~--~~~vLv~T~~~~~Gi 487 (548)
..+.++||||+++..++.+++.|++. |..+..+||+|+..+|.++++.|+. +.+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 45689999999999999999999874 5566778999999999999999984 459999999999999
Q ss_pred CCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 488 DIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 488 Dip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
|+|+|++||+||+|+|+..|+||+|| ||. +.|.|+.|+++.+..
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999 999 899999999987654
No 29
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.5e-43 Score=400.23 Aligned_cols=349 Identities=17% Similarity=0.211 Sum_probs=256.0
Q ss_pred CCCCCcHHHHhhhhccc-CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVL-SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~-~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
||+.++++|.++++.++ +++|++++||||||||++|.+++++.+.+.... .......+.++||++|+++|+.|
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~------~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM------DGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT------TSSCCTTSCEEEEECSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc------cccccCCCCEEEEECCHHHHHHH
Confidence 79999999999999877 578999999999999999999999998764211 11122346789999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCCh
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSF 258 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~ 258 (548)
+++.+.+.....| +++..++|+.... ..+++|+|+|||++..++..... ...++++++||+||+|++. ..+
T Consensus 150 ~~~~l~~~~~~~g---i~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~--~~~l~~v~~vIiDEvH~l~-d~R 223 (1724)
T 4f92_B 150 MVGSFGKRLATYG---ITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGE--RTYTQLVRLIILDEIHLLH-DDR 223 (1724)
T ss_dssp HHHHHHHHHTTTT---CCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTT--HHHHTTEEEEEETTGGGGG-STT
T ss_pred HHHHHHHHHhhCC---CEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCcc--chhhcCcCEEEEecchhcC-Ccc
Confidence 9999998888777 8899999987654 34689999999998666654322 2347889999999999765 478
Q ss_pred HHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccch
Q 045757 259 QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKK 338 (548)
Q Consensus 259 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (548)
+..++.++.++..
T Consensus 224 G~~lE~~l~rl~~------------------------------------------------------------------- 236 (1724)
T 4f92_B 224 GPVLEALVARAIR------------------------------------------------------------------- 236 (1724)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 8888888766531
Q ss_pred hhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecch---hhHHHHHHHHH
Q 045757 339 DWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVD---TQVDALIEAVK 415 (548)
Q Consensus 339 ~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~ 415 (548)
.........|+|++|||++. ...++.++-.........+...+ ....+.+.++..... .....+.+.+.
T Consensus 237 ----~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~---RPvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 237 ----NIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF---RPVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp ----HHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG---CSSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred ----HHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC---ccCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 11223456899999999973 33333322111000000111111 111223332222222 22333334444
Q ss_pred HHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-------------------------------------CCceEEecCCC
Q 045757 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKTA-------------------------------------GIECYCYHKDL 458 (548)
Q Consensus 416 ~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~ 458 (548)
..+.....++++||||++++.|+.+++.|.+. ...+++|||+|
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 44444456789999999999999999888642 23588999999
Q ss_pred CHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----ec------CCCCHHHHHHHhcccccCCC--cceEEE
Q 045757 459 SLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----AD------FATSAVDFLHRVGRTARAGQ--YGLVTS 525 (548)
Q Consensus 459 ~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~~------~p~s~~~~~Qr~GR~gR~g~--~G~~i~ 525 (548)
+.++|..+++.|+ |..+|||||++++.|||+|+.++||. |+ .|.+..+|.||+|||||.|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999 66799999999999999999999985 43 35689999999999999875 599999
Q ss_pred EeecCchhHHHHH
Q 045757 526 LYTESNRDLVDTI 538 (548)
Q Consensus 526 ~~~~~~~~~~~~i 538 (548)
+++.++...+..+
T Consensus 469 ~~~~~~~~~~~~l 481 (1724)
T 4f92_B 469 ITSHGELQYYLSL 481 (1724)
T ss_dssp EEESTTCCHHHHH
T ss_pred EecchhHHHHHHH
Confidence 9999887766654
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-42 Score=379.30 Aligned_cols=322 Identities=18% Similarity=0.184 Sum_probs=241.6
Q ss_pred HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHH
Q 045757 100 ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLC 179 (548)
Q Consensus 100 ~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~ 179 (548)
...+| .|+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|+
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------------~g~rvL~l~PtkaLa 142 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------NKQRVIYTSPIKALS 142 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------TTCEEEEEESSHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------------cCCeEEEECChHHHH
Confidence 35577 499999999999999999999999999999999999887763 257899999999999
Q ss_pred HHHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 180 EQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 180 ~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
.|+++.+.++.. .+..++|+... ..+++|+|+||++|.+++... ...+.++++||+||+|++.+.+++
T Consensus 143 ~Q~~~~l~~~~~-------~vglltGd~~~-~~~~~IvV~Tpe~L~~~L~~~----~~~l~~l~lVViDEaH~l~d~~rg 210 (1010)
T 2xgj_A 143 NQKYRELLAEFG-------DVGLMTGDITI-NPDAGCLVMTTEILRSMLYRG----SEVMREVAWVIFDEVHYMRDKERG 210 (1010)
T ss_dssp HHHHHHHHHHHS-------CEEEECSSCEE-CTTCSEEEEEHHHHHHHHHHT----CTTGGGEEEEEEETGGGGGCTTTH
T ss_pred HHHHHHHHHHhC-------CEEEEeCCCcc-CCCCCEEEEcHHHHHHHHHcC----cchhhcCCEEEEechhhhcccchh
Confidence 999999998863 45667777654 346899999999998877532 234788999999999999999898
Q ss_pred HHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchh
Q 045757 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKD 339 (548)
Q Consensus 260 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (548)
..++.++..++
T Consensus 211 ~~~e~il~~l~--------------------------------------------------------------------- 221 (1010)
T 2xgj_A 211 VVWEETIILLP--------------------------------------------------------------------- 221 (1010)
T ss_dssp HHHHHHHHHSC---------------------------------------------------------------------
T ss_pred HHHHHHHHhcC---------------------------------------------------------------------
Confidence 88888876653
Q ss_pred hHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccccee---------eecc-------
Q 045757 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWI---------EVTV------- 403 (548)
Q Consensus 340 ~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------- 403 (548)
...|++++|||++.. ..+..++..........+...... ..+.+++. .+..
T Consensus 222 ---------~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1010)
T 2xgj_A 222 ---------DKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREE 288 (1010)
T ss_dssp ---------TTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHH
T ss_pred ---------CCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchH
Confidence 468999999998742 222222211100000000000000 00000000 0000
Q ss_pred ---------------------------------------hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHH
Q 045757 404 ---------------------------------------DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKIL 444 (548)
Q Consensus 404 ---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L 444 (548)
...+..++..+.. ....++||||+++..|+.++..|
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-----~~~~~~IVF~~sr~~~e~la~~L 363 (1010)
T 2xgj_A 289 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-----KKYNPVIVFSFSKRDCEELALKM 363 (1010)
T ss_dssp HHHHHHHTCC------------------------------CHHHHHHHHHHH-----HTCCSEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-----cCCCCEEEEECCHHHHHHHHHHH
Confidence 1112223333332 24569999999999999999998
Q ss_pred HHcCC---------------------------------------ceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc
Q 045757 445 KTAGI---------------------------------------ECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA 484 (548)
Q Consensus 445 ~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~ 484 (548)
.+.++ .+..+||+|+..+|..+++.|+ +..+|||||++++
T Consensus 364 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la 443 (1010)
T 2xgj_A 364 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443 (1010)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGG
T ss_pred HhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhh
Confidence 76443 2789999999999999999999 6779999999999
Q ss_pred ccCCCCCCCEEEE----ecC----CCCHHHHHHHhcccccCCC--cceEEEEeecC-chhHHHHH
Q 045757 485 RGIDIPNVSHVIQ----ADF----ATSAVDFLHRVGRTARAGQ--YGLVTSLYTES-NRDLVDTI 538 (548)
Q Consensus 485 ~GiDip~v~~VI~----~~~----p~s~~~~~Qr~GR~gR~g~--~G~~i~~~~~~-~~~~~~~i 538 (548)
+|||+|++++||+ ||. |.|+.+|.||+||+||.|. .|.|++++++. +...+.++
T Consensus 444 ~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 444 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 9999999999999 998 8999999999999999997 49999999876 55555544
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=382.28 Aligned_cols=343 Identities=17% Similarity=0.240 Sum_probs=223.4
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHH-HH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQV-VR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~-~~ 184 (548)
.|+|+|.++++.+++|+++++++|||+|||++|++|+++.+.... ....+.++|||+|+++|+.|+ .+
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKK-----------KASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHH-----------HHTCCCCBCCEESCSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcc-----------ccCCCCeEEEEECCHHHHHHHHHH
Confidence 799999999999999999999999999999999999998876541 011237899999999999999 99
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhh--hhccccccCeeEEEEecchhhccC
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKR--RRRMEFVRGVKYVVFDEADMLLCG 256 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~~~~~vV~DEah~l~~~ 256 (548)
.+++++.. + +++..+.|+..... +.++|+|+||++|.+.+.... ......+.++++||+||||++...
T Consensus 76 ~l~~~~~~-~---~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 76 EFQPFLKK-W---YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 151 (699)
T ss_dssp THHHHHTT-T---SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTT
T ss_pred HHHHHcCc-C---ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCcc
Confidence 99998865 2 78888888876543 579999999999998885432 222334678999999999998655
Q ss_pred ChHHH-HHHHHhh-hhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCc
Q 045757 257 SFQNQ-VIRLINM-FRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGS 334 (548)
Q Consensus 257 ~~~~~-~~~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (548)
++... +..++.. ++..
T Consensus 152 ~~~~~i~~~~l~~~~~~~-------------------------------------------------------------- 169 (699)
T 4gl2_A 152 AVYNNIMRHYLMQKLKNN-------------------------------------------------------------- 169 (699)
T ss_dssp BSSCSHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred chHHHHHHHHHHhhhccc--------------------------------------------------------------
Confidence 43332 2222211 1000
Q ss_pred ccchhhHHHHhhhcccceeEEEeeccCCCccchh-------hhhhhhcCC-CCcccccc--ccc--ccCcccccceeee-
Q 045757 335 IKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTA-------GAVLKQMFP-DADWISGN--YLH--FHNPRLKEKWIEV- 401 (548)
Q Consensus 335 ~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~-------~~~l~~~~~-~~~~~~~~--~~~--~~~~~~~~~~~~~- 401 (548)
.|..........++++++|||+........ ..+...... ........ ... ...+.....+...
T Consensus 170 ----~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 170 ----RLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp ----HHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred ----ccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 000000001145789999999986432211 111111111 00000000 000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 045757 402 -------------------------------------------------------------------------------- 401 (548)
Q Consensus 402 -------------------------------------------------------------------------------- 401 (548)
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------cchhhHHHHHHHHHHHhhccCCCCcEEE
Q 045757 402 ----------------------------------------------------TVDTQVDALIEAVKERLEFGAETSRTMV 429 (548)
Q Consensus 402 ----------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~lV 429 (548)
....+...+.+.+.........++++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0111222233333333222222789999
Q ss_pred EeCChhHHHHHHHHHHHc------CCceEEecCC--------CCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCE
Q 045757 430 FANTVDAVYAVTKILKTA------GIECYCYHKD--------LSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSH 494 (548)
Q Consensus 430 F~~s~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~ 494 (548)
||++++.++.+++.|.+. |+.+..+||+ |+..+|.++++.|+ ++.+|||||+++++|||+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999 67799999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 495 VIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 495 VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
||+||+|+|+..|+||+||+||.| +.+++++...+
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999976654 44444444443
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.2e-42 Score=380.40 Aligned_cols=332 Identities=15% Similarity=0.193 Sum_probs=246.1
Q ss_pred HHHHH-HHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEc
Q 045757 95 LIRAL-ENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLC 173 (548)
Q Consensus 95 l~~~l-~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~ 173 (548)
+.+.+ ...|| .|+|+|.++++.+++|+|++++||||||||++|+++++..+ . .+.++|||+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~----------------~~~~~Lil~ 128 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-R----------------KGKKSALVF 128 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-T----------------TTCCEEEEE
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-h----------------cCCeEEEEe
Confidence 33444 34688 69999999999999999999999999999998888877766 2 367999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhccccccCee
Q 045757 174 PNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243 (548)
Q Consensus 174 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~ 243 (548)
||++|+.|+.+.++++. ..+ +++..++|+.... .+.++|+|+||++|.+++.. ..+.+++
T Consensus 129 PtreLa~Q~~~~l~~l~-~~~---i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------l~~~~l~ 198 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLA-DEK---VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRFD 198 (1104)
T ss_dssp SSHHHHHHHHHHHHTTS-CTT---SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH------HHTSCCS
T ss_pred chHHHHHHHHHHHHHhh-CCC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh------hcccCcC
Confidence 99999999999999976 444 7899999998652 24599999999999888752 2367899
Q ss_pred EEEEecchhhcc-----------CChHHH-HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 244 YVVFDEADMLLC-----------GSFQNQ-VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 244 ~vV~DEah~l~~-----------~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
+||+||||++.. .+|... +..++..++.. ..
T Consensus 199 ~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~-------------~~------------------------ 241 (1104)
T 4ddu_A 199 FVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG-------------KI------------------------ 241 (1104)
T ss_dssp EEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT-------------SC------------------------
T ss_pred EEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccc-------------hh------------------------
Confidence 999999987654 555555 55665554310 00
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeecc-CCCccchhhhhhhhcCCCCccccccccccc
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATL-PINGKKTAGAVLKQMFPDADWISGNYLHFH 390 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (548)
.... .-....|++++|||+ +...... .+..+.. +........
T Consensus 242 -----------~~~~-------------------~~~~~~q~ll~SAT~~p~~~~~~---~~~~~l~----i~v~~~~~~ 284 (1104)
T 4ddu_A 242 -----------YERP-------------------KNLKPGILVVSSATAKPRGIRPL---LFRDLLN----FTVGRLVSV 284 (1104)
T ss_dssp -----------CCCC-------------------SSCCCCEEEEECBSSCCCSSTTH---HHHHHTC----CCCCBCCCC
T ss_pred -----------hhhh-------------------ccCCCceEEEEcCCCCcHHHHHH---Hhhccee----EEeccCCCC
Confidence 0000 000458999999994 4333322 2222111 111111122
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceE-EecCCCCHHHHHHHHHh
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECY-CYHKDLSLEERAKTLVN 469 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~ 469 (548)
...+.+.+..+ .+...+.+.+... ++++||||+++..++.+++.|.+.++.+. .+||+ |.+ ++.
T Consensus 285 ~~~i~~~~~~~---~k~~~L~~ll~~~------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~ 349 (1104)
T 4ddu_A 285 ARNITHVRISS---RSKEKLVELLEIF------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FED 349 (1104)
T ss_dssp CCCEEEEEESC---CCHHHHHHHHHHH------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHH
T ss_pred cCCceeEEEec---CHHHHHHHHHHhc------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHH
Confidence 33344444433 3555566666552 48999999999999999999999999998 99993 555 999
Q ss_pred hc-cCCcEEEE----eCcccccCCCCC-CCEEEEecCCC-----------------------------------------
Q 045757 470 FQ-EKGGVFVC----TDAAARGIDIPN-VSHVIQADFAT----------------------------------------- 502 (548)
Q Consensus 470 f~-~~~~vLv~----T~~~~~GiDip~-v~~VI~~~~p~----------------------------------------- 502 (548)
|+ ++.+|||| |+++++|||+|+ |++|||+|+|.
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~ 429 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAK 429 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHH
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 77899999 999999999999 99999999998
Q ss_pred -------------------------------CHHHHHHHhcccccCCCcc--eEEEEeecCchhHHHHHHHHHH
Q 045757 503 -------------------------------SAVDFLHRVGRTARAGQYG--LVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 503 -------------------------------s~~~~~Qr~GR~gR~g~~G--~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+..+|+||+||+||.|..| .+++++..+|...++.|++.++
T Consensus 430 ~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 430 EHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 8889999999999965433 3455555588889999988776
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-42 Score=396.61 Aligned_cols=358 Identities=18% Similarity=0.170 Sum_probs=261.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccC-CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPS 169 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (548)
|.+...+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|+++.+.+. ++.++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---------------~~~ka 975 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---------------SEGRC 975 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---------------TTCCE
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---------------CCCEE
Confidence 556777888888999999999999999975 57899999999999999999999998765 46789
Q ss_pred EEEcCcHHHHHHHHHHHHHhh-cccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhccccccCeeEE
Q 045757 170 LVLCPNVVLCEQVVRMANALS-ADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYV 245 (548)
Q Consensus 170 Lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~v 245 (548)
||++|+++|+.|+++.|.+.. ...| +++..++|+.... ..+++|+|+|||++..++..... ...++++++|
T Consensus 976 vyi~P~raLa~q~~~~~~~~f~~~~g---~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~--~~~l~~v~lv 1050 (1724)
T 4f92_B 976 VYITPMEALAEQVYMDWYEKFQDRLN---KKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ--RKNVQNINLF 1050 (1724)
T ss_dssp EEECSCHHHHHHHHHHHHHHHTTTSC---CCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTT--CHHHHSCSEE
T ss_pred EEEcChHHHHHHHHHHHHHHhchhcC---CEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCccc--ccccceeeEE
Confidence 999999999999999997654 4455 7888888876543 35689999999999777654322 2347899999
Q ss_pred EEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccc
Q 045757 246 VFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEG 325 (548)
Q Consensus 246 V~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (548)
|+||+|++.+ .++..++.++.+++.
T Consensus 1051 ViDE~H~l~d-~rg~~le~il~rl~~------------------------------------------------------ 1075 (1724)
T 4f92_B 1051 VVDEVHLIGG-ENGPVLEVICSRMRY------------------------------------------------------ 1075 (1724)
T ss_dssp EECCGGGGGS-TTHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EeechhhcCC-CCCccHHHHHHHHHH------------------------------------------------------
Confidence 9999997765 578888888776641
Q ss_pred cccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecc--
Q 045757 326 LTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTV-- 403 (548)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 403 (548)
+........|++++|||++ +...++.++ .........+... .....+..++.....
T Consensus 1076 -----------------i~~~~~~~~riI~lSATl~-N~~dla~WL-~~~~~~~~~~~~~---~RPvpL~~~i~~~~~~~ 1133 (1724)
T 4f92_B 1076 -----------------ISSQIERPIRIVALSSSLS-NAKDVAHWL-GCSATSTFNFHPN---VRPVPLELHIQGFNISH 1133 (1724)
T ss_dssp -----------------HHHTTSSCCEEEEEESCBT-THHHHHHHH-TCCSTTEEECCGG---GCSSCEEEEEEEECCCS
T ss_pred -----------------HHhhcCCCceEEEEeCCCC-CHHHHHHHh-CCCCCCeEEeCCC---CCCCCeEEEEEeccCCC
Confidence 2223345789999999997 334443333 2111111111111 111112222222211
Q ss_pred -hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc----------------------------------C
Q 045757 404 -DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----------------------------------G 448 (548)
Q Consensus 404 -~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------------------------------~ 448 (548)
..+...+...+...+.....++++||||++++.|+.++..|... .
T Consensus 1134 ~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~ 1213 (1724)
T 4f92_B 1134 TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLL 1213 (1724)
T ss_dssp HHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHH
T ss_pred chhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHh
Confidence 12222222222223333356789999999999999988877431 2
Q ss_pred CceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE----e------cCCCCHHHHHHHhcccccC
Q 045757 449 IECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ----A------DFATSAVDFLHRVGRTARA 517 (548)
Q Consensus 449 ~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~----~------~~p~s~~~~~Qr~GR~gR~ 517 (548)
..+++||++|+..+|..+++.|+ +..+|||||+++++|||+|+.++||. | ..|.+..+|+||+|||||.
T Consensus 1214 ~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1214 NGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 35899999999999999999999 67799999999999999999999883 2 2367899999999999999
Q ss_pred CC--cceEEEEeecCchhHHHHHHHHHHcCCCC
Q 045757 518 GQ--YGLVTSLYTESNRDLVDTIRRAAKLGQPV 548 (548)
Q Consensus 518 g~--~G~~i~~~~~~~~~~~~~i~~~~~~~~pv 548 (548)
|. .|.|++++.+.+...++++ +....||
T Consensus 1294 g~d~~G~avll~~~~~~~~~~~l---l~~~~pv 1323 (1724)
T 4f92_B 1294 LQDDEGRCVIMCQGSKKDFFKKF---LYEPLPV 1323 (1724)
T ss_dssp TTCSCEEEEEEEEGGGHHHHHHH---TTSCBCC
T ss_pred CCCCceEEEEEecchHHHHHHHH---hCCCCce
Confidence 97 5999999999887766554 4444443
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9e-42 Score=355.37 Aligned_cols=324 Identities=23% Similarity=0.247 Sum_probs=236.8
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.|+|+|.++++.++++ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------------~~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------------YGGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------------SCSCEEEECSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------------CCCeEEEEECCHHHHHHHHHH
Confidence 6999999999999998 99999999999999999999887752 367899999999999999999
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
+.++... +..++..+.|+.... ..+++|+|+||+.+...+.... ..+.++++||+||||++.+.....
T Consensus 72 ~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDEaH~~~~~~~~~ 144 (494)
T 1wp9_A 72 FRRLFNL---PPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR----ISLEDVSLIVFDEAHRAVGNYAYV 144 (494)
T ss_dssp HHHHBCS---CGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTS----CCTTSCSEEEEETGGGCSTTCHHH
T ss_pred HHHHhCc---chhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCC----cchhhceEEEEECCcccCCCCcHH
Confidence 9988632 225778888876543 2468999999999988765332 236789999999999987655444
Q ss_pred HHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhh
Q 045757 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340 (548)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (548)
.+...+...
T Consensus 145 ~~~~~~~~~----------------------------------------------------------------------- 153 (494)
T 1wp9_A 145 FIAREYKRQ----------------------------------------------------------------------- 153 (494)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHhc-----------------------------------------------------------------------
Confidence 433333221
Q ss_pred HHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCccccc-------ccccc--------cCc-c-----------
Q 045757 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISG-------NYLHF--------HNP-R----------- 393 (548)
Q Consensus 341 ~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~--------~~~-~----------- 393 (548)
....+++++|||+..+.. ....++............ .+... ..+ .
T Consensus 154 -------~~~~~~l~lTaTp~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (494)
T 1wp9_A 154 -------AKNPLVIGLTASPGSTPE-KIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREM 225 (494)
T ss_dssp -------CSSCCEEEEESCSCSSHH-HHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred -------CCCCeEEEEecCCCCCcH-HHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHH
Confidence 245789999999873221 122222111100000000 00000 000 0
Q ss_pred --------------------c---------------------------------------------------cccee---
Q 045757 394 --------------------L---------------------------------------------------KEKWI--- 399 (548)
Q Consensus 394 --------------------~---------------------------------------------------~~~~~--- 399 (548)
+ ..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 305 (494)
T 1wp9_A 226 LRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLY 305 (494)
T ss_dssp HHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 0 00000
Q ss_pred --------------------------------eecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc
Q 045757 400 --------------------------------EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA 447 (548)
Q Consensus 400 --------------------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 447 (548)
......+...+.+.+...... ..+.++||||+++..++.+++.|.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~ 384 (494)
T 1wp9_A 306 EEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD 384 (494)
T ss_dssp HHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT
T ss_pred HhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc
Confidence 001223445555555543221 35789999999999999999999999
Q ss_pred CCceEEecC--------CCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCC
Q 045757 448 GIECYCYHK--------DLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAG 518 (548)
Q Consensus 448 ~~~~~~~~~--------~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 518 (548)
++.+..+|| +|+..+|.++++.|+ ++.+|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g 464 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 464 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 999999999 999999999999999 77799999999999999999999999999999999999999999999
Q ss_pred CcceEEEEeecCchhH
Q 045757 519 QYGLVTSLYTESNRDL 534 (548)
Q Consensus 519 ~~G~~i~~~~~~~~~~ 534 (548)
+ |.++.|+++.+.+.
T Consensus 465 ~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 465 P-GRVIILMAKGTRDE 479 (494)
T ss_dssp C-SEEEEEEETTSHHH
T ss_pred C-ceEEEEEecCCHHH
Confidence 8 99999999986553
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.6e-42 Score=379.92 Aligned_cols=340 Identities=19% Similarity=0.253 Sum_probs=199.2
Q ss_pred HHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHH
Q 045757 99 LENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVL 178 (548)
Q Consensus 99 l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L 178 (548)
..-.|+..|+|+|.++++.+++|+++++++|||+|||++|++|+++.+... ....+.++|||+|+++|
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------~~~~~~~vLvl~Pt~~L 308 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM------------PAGRKAKVVFLATKVPV 308 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------CSSCCCCEEEECSSHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------cccCCCeEEEEeCCHHH
Confidence 334467899999999999999999999999999999999999998776332 11226789999999999
Q ss_pred HHHHHHHHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchh
Q 045757 179 CEQVVRMANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADM 252 (548)
Q Consensus 179 ~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~ 252 (548)
+.|+.+.++++....+ +++..++|+..... .+++|+|+||++|.+.+.... ...+.++++||+||||+
T Consensus 309 ~~Q~~~~~~~~~~~~~---~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~---~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 309 YEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---LTSLSIFTLMIFDECHN 382 (936)
T ss_dssp HHHHHHHHHHHHHTTT---CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS---CCCGGGCSEEEEETGGG
T ss_pred HHHHHHHHHHHhcccC---ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc---cccccCCCEEEEECccc
Confidence 9999999999987665 88899999875543 468999999999998875432 11367899999999999
Q ss_pred hccCChHHHHH-HHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccc
Q 045757 253 LLCGSFQNQVI-RLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETK 331 (548)
Q Consensus 253 l~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (548)
+.+.+....+. .++...
T Consensus 383 ~~~~~~~~~i~~~~~~~~-------------------------------------------------------------- 400 (936)
T 4a2w_A 383 TTGNHPYNVLMTRYLEQK-------------------------------------------------------------- 400 (936)
T ss_dssp CSTTCHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred cCCCccHHHHHHHHHHHh--------------------------------------------------------------
Confidence 87765322221 221110
Q ss_pred cCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhh-------------------------hcCCCCcccc--c
Q 045757 332 SGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK-------------------------QMFPDADWIS--G 384 (548)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~-------------------------~~~~~~~~~~--~ 384 (548)
........+++++|||+...........+. .+........ .
T Consensus 401 ------------~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 468 (936)
T 4a2w_A 401 ------------FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 468 (936)
T ss_dssp ------------HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEEC
T ss_pred ------------hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEec
Confidence 000124578999999996433211111000 0000000000 0
Q ss_pred cc-cc-----------------------------ccCcc--c--cccee-e-----------------------------
Q 045757 385 NY-LH-----------------------------FHNPR--L--KEKWI-E----------------------------- 400 (548)
Q Consensus 385 ~~-~~-----------------------------~~~~~--~--~~~~~-~----------------------------- 400 (548)
.. .. ..... . ...+. .
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00 00 00000 0 00000 0
Q ss_pred ------------------------------------------------------------ecchhhHHHHHHHHHHHhhc
Q 045757 401 ------------------------------------------------------------VTVDTQVDALIEAVKERLEF 420 (548)
Q Consensus 401 ------------------------------------------------------------~~~~~~~~~l~~~l~~~~~~ 420 (548)
.....+...+.+.+.+...
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~- 627 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR- 627 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc-
Confidence 0012233333334433221
Q ss_pred cCCCCcEEEEeCChhHHHHHHHHHHHc------------CCceEEecCCCCHHHHHHHHHhhcc--CCcEEEEeCccccc
Q 045757 421 GAETSRTMVFANTVDAVYAVTKILKTA------------GIECYCYHKDLSLEERAKTLVNFQE--KGGVFVCTDAAARG 486 (548)
Q Consensus 421 ~~~~~~~lVF~~s~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~--~~~vLv~T~~~~~G 486 (548)
...+.++||||+++..++.+++.|.+. |.....+||+|+..+|.+++++|+. +.+|||||+++++|
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eG 707 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC----
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcC
Confidence 135789999999999999999999987 5556677899999999999999984 45999999999999
Q ss_pred CCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 487 IDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 487 iDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
||+|+|++||+||+|+|+..|+||+|| ||. +.|.++.|++..+.+
T Consensus 708 IDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999 998 789999999887554
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.7e-41 Score=348.11 Aligned_cols=394 Identities=19% Similarity=0.161 Sum_probs=245.8
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|. .|+++|..+++.+++|+ +..|+||+|||++|.+|++.... .+..++||+||++||.
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------~g~~vlVltPTreLA~ 129 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----------------TGKGVHVVTVNDYLAQ 129 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----------------TSSCCEEEESSHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----------------cCCcEEEEcCCHHHHH
Confidence 3575 89999999999999998 99999999999999999986542 2467999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l 253 (548)
|..+++..+....| +++.+++||.+.. ..+++|+|+||++| .+++..... .....++++.++|+||||.+
T Consensus 130 Q~~e~~~~l~~~lg---l~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~m 206 (853)
T 2fsf_A 130 RDAENNRPLFEFLG---LTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSI 206 (853)
T ss_dssp HHHHHHHHHHHHTT---CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHH
T ss_pred HHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHH
Confidence 99999999999888 8999999987643 23689999999999 677654321 11234678999999999998
Q ss_pred c-cC---------------ChHHHHHHHHhhhhcc-------------------HHHHhhhcccCcccccccC-------
Q 045757 254 L-CG---------------SFQNQVIRLINMFRFD-------------------EKQLSRMNESGVEKPLEMD------- 291 (548)
Q Consensus 254 ~-~~---------------~~~~~~~~i~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~------- 291 (548)
+ +. ++...+..++..++.. .++.. +..........+.
T Consensus 207 LiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~-lte~g~~~~e~~l~~~~l~~ 285 (853)
T 2fsf_A 207 LIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVN-LTERGLVLIEELLVKEGIMD 285 (853)
T ss_dssp TTTTTTCEEEEEEC------------------------------------------------------------------
T ss_pred HHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEE-EcHHHHHHHHHHHHhCCccc
Confidence 8 43 3567778888777641 11110 0000000000000
Q ss_pred ----CCCCCCCCc-hhhhh-h--------hhhhcccCCCC---------------------CCCCCccccccccccCccc
Q 045757 292 ----NSSLTQPDL-QDEEN-L--------QDEYISDEGNF---------------------EGDSDVEGLTEETKSGSIK 336 (548)
Q Consensus 292 ----~~~~~~~~~-~~~~~-~--------~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 336 (548)
..+...+.. ..... + ...|+...+.. ..-...+...-..+.....
T Consensus 286 ~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla 365 (853)
T 2fsf_A 286 EGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLA 365 (853)
T ss_dssp -----------------------------------------------------------------------CCCCCEEEE
T ss_pred ccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccc
Confidence 000000000 00000 0 00011000000 0000000111111111111
Q ss_pred chhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccc-ccceeeecchhhHHHHHHHHH
Q 045757 337 KKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRL-KEKWIEVTVDTQVDALIEAVK 415 (548)
Q Consensus 337 ~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 415 (548)
.-.++.+...| .++.+||+|.......+ .+-|.-....+... ...... ....+......|...+.+.+.
T Consensus 366 ~It~qnyfr~Y---~kl~GmTGTa~te~~ef----~~iY~l~vv~IPtn---~p~~R~d~~d~v~~~~~~K~~al~~~i~ 435 (853)
T 2fsf_A 366 SITFQNYFRLY---EKLAGMTGTADTEAFEF----SSIYKLDTVVVPTN---RPMIRKDLPDLVYMTEAEKIQAIIEDIK 435 (853)
T ss_dssp EEEHHHHHTTS---SEEEEEECTTCCCHHHH----HHHHCCEEEECCCS---SCCCCEECCCEEESSHHHHHHHHHHHHH
T ss_pred eeehHHHHhhh---hhhhcCCCCchhHHHHH----HHHhCCcEEEcCCC---CCceeecCCcEEEeCHHHHHHHHHHHHH
Confidence 11222333333 47899999986433222 22222122222211 111111 123455667778888888776
Q ss_pred HHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCC---
Q 045757 416 ERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNV--- 492 (548)
Q Consensus 416 ~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v--- 492 (548)
... ..+.++||||+|+..++.+++.|.+.|+.+..+||++...++..+.++|+.+ .|+|||++++||+||+..
T Consensus 436 ~~~---~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~gn~ 511 (853)
T 2fsf_A 436 ERT---AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA-AVTIATNMAGRGTDIVLGGSW 511 (853)
T ss_dssp HHH---TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT-CEEEEESCCSSCSCCCTTCCH
T ss_pred HHh---cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-eEEEecccccCCcCccCCCch
Confidence 532 4578999999999999999999999999999999999888887777778744 799999999999999874
Q ss_pred ----------------------------------CEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCch
Q 045757 493 ----------------------------------SHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNR 532 (548)
Q Consensus 493 ----------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~ 532 (548)
.+||+++.|.|...|.||+||+||+|.+|.+++|++..|.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 512 QAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 6999999999999999999999999999999999998773
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8e-41 Score=368.60 Aligned_cols=325 Identities=18% Similarity=0.151 Sum_probs=236.3
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.++| .|+++|.++++.+++|++++++||||+|||++|++++...+. .+.++||++|+++|+.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------~g~~vlvl~PtraLa~ 96 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------NMTKTIYTSPIKALSN 96 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------TTCEEEEEESCGGGHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------cCCeEEEEeCCHHHHH
Confidence 4466 589999999999999999999999999999999998877652 2578999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
|+++.+.++... +.+..++|+... ...++|+|+||++|.+.+... ...+.++++||+||||++.+++++.
T Consensus 97 Q~~~~l~~~~~~-----~~v~~l~G~~~~-~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~lvViDEaH~l~d~~~g~ 166 (997)
T 4a4z_A 97 QKFRDFKETFDD-----VNIGLITGDVQI-NPDANCLIMTTEILRSMLYRG----ADLIRDVEFVIFDEVHYVNDQDRGV 166 (997)
T ss_dssp HHHHHHHTTC-------CCEEEECSSCEE-CTTSSEEEEEHHHHHHHHHHT----CSGGGGEEEEEECCTTCCCTTCTTC
T ss_pred HHHHHHHHHcCC-----CeEEEEeCCCcc-CCCCCEEEECHHHHHHHHHhC----chhhcCCCEEEEECcccccccchHH
Confidence 999999987532 677888887654 356899999999998877533 2347789999999999999998888
Q ss_pred HHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhh
Q 045757 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340 (548)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (548)
.++.++..++
T Consensus 167 ~~e~ii~~l~---------------------------------------------------------------------- 176 (997)
T 4a4z_A 167 VWEEVIIMLP---------------------------------------------------------------------- 176 (997)
T ss_dssp CHHHHHHHSC----------------------------------------------------------------------
T ss_pred HHHHHHHhcc----------------------------------------------------------------------
Confidence 8888776654
Q ss_pred HHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC-------cc--------------------
Q 045757 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN-------PR-------------------- 393 (548)
Q Consensus 341 ~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~-------------------- 393 (548)
...|++++|||++... .+..++..........+......... ..
T Consensus 177 --------~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 177 --------QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp --------TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred --------cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 4689999999986332 22222211110000000000000000 00
Q ss_pred ---------------------------------------------------------------cccceeeecchhhHHHH
Q 045757 394 ---------------------------------------------------------------LKEKWIEVTVDTQVDAL 410 (548)
Q Consensus 394 ---------------------------------------------------------------~~~~~~~~~~~~~~~~l 410 (548)
...+........+...+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 00000001112234445
Q ss_pred HHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCC---------------------------------------ce
Q 045757 411 IEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGI---------------------------------------EC 451 (548)
Q Consensus 411 ~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~ 451 (548)
++.+.. ....++||||++++.|+.++..|.+.++ .+
T Consensus 328 i~~l~~-----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 328 VNYLRK-----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHH-----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHh-----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 555544 3567999999999999999999977554 57
Q ss_pred EEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC---------CHHHHHHHhcccccCC--C
Q 045757 452 YCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT---------SAVDFLHRVGRTARAG--Q 519 (548)
Q Consensus 452 ~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~---------s~~~~~Qr~GR~gR~g--~ 519 (548)
..+||+|+..+|..+++.|+ +..+|||||+++++|||+|+ ..||+++.+. |..+|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 99999999999999999999 67799999999999999999 5555555554 9999999999999998 4
Q ss_pred cceEEEEeec--CchhHHHHH
Q 045757 520 YGLVTSLYTE--SNRDLVDTI 538 (548)
Q Consensus 520 ~G~~i~~~~~--~~~~~~~~i 538 (548)
.|.|++++.. .+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 6888888843 234444443
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.2e-41 Score=353.30 Aligned_cols=314 Identities=13% Similarity=0.106 Sum_probs=229.5
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 045757 89 LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAP 168 (548)
Q Consensus 89 l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (548)
+++++.+.+++... ...++|+|+.+++.+++|++++++||||||||++|++|+++.+... +.+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------------~~~ 217 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------------RLR 217 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------TCC
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------------CCe
Confidence 45666655555443 4688999999999999999999999999999999999999998654 679
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC--CccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEE
Q 045757 169 SLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ--GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVV 246 (548)
Q Consensus 169 ~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV 246 (548)
+||++||++|+.|+.+.++.. .+. +.+.. .....+..+.++|.+.+...+... ..+.++++||
T Consensus 218 vLvl~PtreLa~Qi~~~l~~~---------~v~-~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-----~~l~~~~~iV 282 (618)
T 2whx_A 218 TLILAPTRVVAAEMEEALRGL---------PIR-YQTPAVKSDHTGREIVDLMCHATFTTRLLSS-----TRVPNYNLIV 282 (618)
T ss_dssp EEEEESSHHHHHHHHHHTTTS---------CEE-ECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-----SSCCCCSEEE
T ss_pred EEEEcChHHHHHHHHHHhcCC---------cee-EecccceeccCCCceEEEEChHHHHHHHhcc-----ccccCCeEEE
Confidence 999999999999999877622 222 22221 122334556677777775544221 2378899999
Q ss_pred EecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCcccc
Q 045757 247 FDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGL 326 (548)
Q Consensus 247 ~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (548)
+||||++ +.++...+..++..++
T Consensus 283 iDEah~~-~~~~~~~~~~i~~~l~-------------------------------------------------------- 305 (618)
T 2whx_A 283 MDEAHFT-DPCSVAARGYISTRVE-------------------------------------------------------- 305 (618)
T ss_dssp EESTTCC-SHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred EECCCCC-CccHHHHHHHHHHHhc--------------------------------------------------------
Confidence 9999987 5556666666665442
Q ss_pred ccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhh
Q 045757 327 TEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQ 406 (548)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (548)
....|+++||||++.....+... ....+..... . . ..+
T Consensus 306 ---------------------~~~~q~il~SAT~~~~~~~~~~~-------~~~~~~v~~~---~----------~-~~~ 343 (618)
T 2whx_A 306 ---------------------MGEAAAIFMTATPPGSTDPFPQS-------NSPIEDIERE---I----------P-ERS 343 (618)
T ss_dssp ---------------------HTSCEEEEECSSCTTCCCSSCCC-------SSCEEEEECC---C----------C-SSC
T ss_pred ---------------------ccCccEEEEECCCchhhhhhhcc-------CCceeeeccc---C----------C-HHH
Confidence 13589999999998664433220 0000000000 0 0 011
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccc
Q 045757 407 VDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAAR 485 (548)
Q Consensus 407 ~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~ 485 (548)
...+++.+.+ ..+++||||++++.++.+++.|++.++.+..+||+ +|.++++.|+ ++.+|||||+++++
T Consensus 344 ~~~ll~~l~~------~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~r 413 (618)
T 2whx_A 344 WNTGFDWITD------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEM 413 (618)
T ss_dssp CSSSCHHHHH------CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGT
T ss_pred HHHHHHHHHh------CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHc
Confidence 1122233332 36799999999999999999999999999999985 7888999999 77899999999999
Q ss_pred cCCCCCCCEE--------------------EEecCCCCHHHHHHHhcccccCCC-cceEEEEee---cCchhHHHHHHHH
Q 045757 486 GIDIPNVSHV--------------------IQADFATSAVDFLHRVGRTARAGQ-YGLVTSLYT---ESNRDLVDTIRRA 541 (548)
Q Consensus 486 GiDip~v~~V--------------------I~~~~p~s~~~~~Qr~GR~gR~g~-~G~~i~~~~---~~~~~~~~~i~~~ 541 (548)
|||+| +++| |+++.|.|..+|+||+||+||.|. .|.+++|++ +.|...++.+++.
T Consensus 414 GiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 414 GANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp TCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred CcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 99997 9988 777889999999999999999965 899999998 7888888888886
Q ss_pred HHc
Q 045757 542 AKL 544 (548)
Q Consensus 542 ~~~ 544 (548)
+.+
T Consensus 493 i~l 495 (618)
T 2whx_A 493 MLL 495 (618)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.9e-41 Score=357.15 Aligned_cols=316 Identities=15% Similarity=0.213 Sum_probs=232.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhhhcccCC------CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 045757 93 DRLIRALENSGFGRPSIVQAASVGPVLSG------KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPR 166 (548)
Q Consensus 93 ~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g------~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~ 166 (548)
+.+...++.++| .|+++|.++++.++++ ++++++|+||||||++|++|++..+.. +
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----------------g 417 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----------------G 417 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------------T
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------------C
Confidence 344445578899 8999999999998865 599999999999999999999988743 5
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 167 APSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 167 ~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
.+++|++||++|+.|+++.+.++....+ +++..++|+.... .+.++|+|+||+.+.+.+
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~g---i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~-------- 486 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFN---IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV-------- 486 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSS---CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC--------
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh--------
Confidence 7899999999999999999999987666 7889999987643 346999999999885432
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCC
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGN 316 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (548)
.+.++++||+||+|++..... ..+.
T Consensus 487 -~~~~l~lVVIDEaHr~g~~qr--------~~l~---------------------------------------------- 511 (780)
T 1gm5_A 487 -HFKNLGLVIIDEQHRFGVKQR--------EALM---------------------------------------------- 511 (780)
T ss_dssp -CCSCCCEEEEESCCCC-------------CCCC----------------------------------------------
T ss_pred -hccCCceEEecccchhhHHHH--------HHHH----------------------------------------------
Confidence 367899999999998521100 0000
Q ss_pred CCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCccccc
Q 045757 317 FEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKE 396 (548)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (548)
......++++||||+.... ......... +...+ .........+..
T Consensus 512 -----------------------------~~~~~~~vL~mSATp~p~t--l~~~~~g~~--~~s~i--~~~p~~r~~i~~ 556 (780)
T 1gm5_A 512 -----------------------------NKGKMVDTLVMSATPIPRS--MALAFYGDL--DVTVI--DEMPPGRKEVQT 556 (780)
T ss_dssp -----------------------------SSSSCCCEEEEESSCCCHH--HHHHHTCCS--SCEEE--CCCCSSCCCCEE
T ss_pred -----------------------------HhCCCCCEEEEeCCCCHHH--HHHHHhCCc--ceeee--eccCCCCcceEE
Confidence 0013478999999975321 111111110 00111 000011111111
Q ss_pred ceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCCh--------hHHHHHHHHHHH---cCCceEEecCCCCHHHHHH
Q 045757 397 KWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTV--------DAVYAVTKILKT---AGIECYCYHKDLSLEERAK 465 (548)
Q Consensus 397 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~--------~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~ 465 (548)
. +....+...+.+.+.+.+ ..+++++|||+.+ ..++.+++.|.+ .+..+..+||+|+..+|.+
T Consensus 557 ~---~~~~~~~~~l~~~i~~~l---~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 557 M---LVPMDRVNEVYEFVRQEV---MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp C---CCCSSTHHHHHHHHHHHT---TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHH
T ss_pred E---EeccchHHHHHHHHHHHH---hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHH
Confidence 1 122334555666665543 4578999999966 457888888887 4678999999999999999
Q ss_pred HHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCC-CHHHHHHHhcccccCCCcceEEEEeecCchh
Q 045757 466 TLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFAT-SAVDFLHRVGRTARAGQYGLVTSLYTESNRD 533 (548)
Q Consensus 466 ~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~ 533 (548)
+++.|+ ++.+|||||+++++|+|+|++++||++++|. +...|.||+||+||.|+.|.|++++++.+..
T Consensus 631 v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 631 VMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp HHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred HHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999 6779999999999999999999999999985 7899999999999999999999999854433
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.2e-40 Score=342.49 Aligned_cols=379 Identities=17% Similarity=0.195 Sum_probs=241.0
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|+++|..+++.+++|+ |.+|+||+|||++|.+|++...+. +..++||+||++|+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------------g~~v~VvTpTreLA~ 166 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------------GNGVHIVTVNDYLAK 166 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------------TSCEEEEESSHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----------------CCCeEEEeCCHHHHH
Confidence 4688 99999999999999998 999999999999999999765532 457999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hccccccCeeEEEEecchhh
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~~~~~vV~DEah~l 253 (548)
|..+++..+....| +++.+++|+.+.. ..+++|+|+||+.| .+++...-. .....++.+.++|+||||.|
T Consensus 167 Qdae~m~~l~~~lG---Lsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsm 243 (922)
T 1nkt_A 167 RDSEWMGRVHRFLG---LQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSI 243 (922)
T ss_dssp HHHHHHHHHHHHTT---CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHH
T ss_pred HHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHH
Confidence 99999999999888 8999999987533 23689999999999 666644311 11234678999999999998
Q ss_pred c-cC---------------ChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 254 L-CG---------------SFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 254 ~-~~---------------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
+ +. +|...+..++..++... .+.......... ++. ......+. ++.
T Consensus 244 LiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~----dy~vDek~rqv~-----Lte---~G~~~~e~-~l~----- 305 (922)
T 1nkt_A 244 LIDEARTPLIISGPADGASNWYTEFARLAPLMEKDV----HYEVDLRKRTVG-----VHE---KGVEFVED-QLG----- 305 (922)
T ss_dssp HTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT----TEEEETTTTEEE-----ECH---HHHHHHHH-HHT-----
T ss_pred HHhcCccceeecCCCCcchhHHHHHHHHHHhCcccc----cceeccCcceEE-----ecH---hHHHHHHH-HhC-----
Confidence 8 32 46777888887764210 000000000000 000 00000000 000
Q ss_pred CCCCCccccccccccCcccchhh-H-HH--HhhhcccceeEE-------Eee-ccCC-Cccchhhh---hh---------
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDW-R-RV--RKNYQRSKQYIF-------VAA-TLPI-NGKKTAGA---VL--------- 372 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~q~v~-------~SA-T~~~-~~~~~~~~---~l--------- 372 (548)
+.............+ . .+ ...+.++..++. +-. |-.. .++..... .+
T Consensus 306 --------i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~ 377 (922)
T 1nkt_A 306 --------IDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIK 377 (922)
T ss_dssp --------CSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCC
T ss_pred --------CccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhcccccccc
Confidence 000000000000000 0 00 011112211111 100 0000 00000000 00
Q ss_pred -----------hhcCCC---Cccccc-----------------ccccccCccc---ccceeeecchhhHHHHHHHHHHHh
Q 045757 373 -----------KQMFPD---ADWISG-----------------NYLHFHNPRL---KEKWIEVTVDTQVDALIEAVKERL 418 (548)
Q Consensus 373 -----------~~~~~~---~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~ 418 (548)
++++.. ..-+.+ .....+.+.. ....+......|...+.+.+....
T Consensus 378 ~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~ 457 (922)
T 1nkt_A 378 AENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY 457 (922)
T ss_dssp CCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH
T ss_pred ccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH
Confidence 000000 000000 0000011111 112345566678888877776532
Q ss_pred hccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCC------
Q 045757 419 EFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNV------ 492 (548)
Q Consensus 419 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v------ 492 (548)
..+.++||||+|+..++.+++.|.+.|+.+..+||+....++..+.+.|+.+ .|+|||++++||+||+.+
T Consensus 458 ---~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G-~VtIATnmAgRGtDI~l~~~~~~~ 533 (922)
T 1nkt_A 458 ---AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG-GVTVATNMAGRGTDIVLGGNVDFL 533 (922)
T ss_dssp ---HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT-CEEEEETTCSTTCCCCTTCCHHHH
T ss_pred ---hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC-eEEEecchhhcCccccCCCCHHHH
Confidence 3567999999999999999999999999999999998777777677777633 799999999999999975
Q ss_pred ----------------------------------------------CEEEEecCCCCHHHHHHHhcccccCCCcceEEEE
Q 045757 493 ----------------------------------------------SHVIQADFATSAVDFLHRVGRTARAGQYGLVTSL 526 (548)
Q Consensus 493 ----------------------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~ 526 (548)
.+||+++.|.|...|.||+||+||.|.+|.+++|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 534 TDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEE
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEE
Confidence 4999999999999999999999999999999999
Q ss_pred eecCch
Q 045757 527 YTESNR 532 (548)
Q Consensus 527 ~~~~~~ 532 (548)
++..|.
T Consensus 614 lSleD~ 619 (922)
T 1nkt_A 614 LSLGDE 619 (922)
T ss_dssp EETTSH
T ss_pred echhHH
Confidence 998765
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-39 Score=333.14 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=208.4
Q ss_pred CCCCCcHHHHhhhhcccCCCcE-EEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 103 GFGRPSIVQAASVGPVLSGKDV-VIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 103 ~~~~~~~~Q~~~i~~i~~g~~~-ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
|+..|+|+|+ ++|.+++++++ +++||||||||++|++|++..+... +.++||++||++|+.|
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------------~~~~lvl~Ptr~La~Q 63 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------------RLRTLILAPTRVVAAE 63 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------------TCCEEEEESSHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------------CCcEEEECCCHHHHHH
Confidence 6788999985 89999998877 8999999999999999999887654 6799999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCC-CccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQ-GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
+.+.+.. ..+....+.. .....+..|.++|++.+.+.+... ..+.++++||+||||++ +..+..
T Consensus 64 ~~~~l~g---------~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~-----~~l~~~~~iViDEah~~-~~~~~~ 128 (451)
T 2jlq_A 64 MEEALRG---------LPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-----TRVPNYNLIVMDEAHFT-DPCSVA 128 (451)
T ss_dssp HHHHTTT---------SCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHC-----SCCCCCSEEEEETTTCC-SHHHHH
T ss_pred HHHHhcC---------ceeeeeeccccccCCCCceEEEEChHHHHHHhhCc-----ccccCCCEEEEeCCccC-CcchHH
Confidence 9987752 2222211111 122345679999999987766422 23778999999999976 222222
Q ss_pred HHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhh
Q 045757 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340 (548)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (548)
....+....
T Consensus 129 ~~~~~~~~~----------------------------------------------------------------------- 137 (451)
T 2jlq_A 129 ARGYISTRV----------------------------------------------------------------------- 137 (451)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHhh-----------------------------------------------------------------------
Confidence 222221110
Q ss_pred HHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhc
Q 045757 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEF 420 (548)
Q Consensus 341 ~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 420 (548)
.....|+++||||++........ .....+... ...+ ...+ ..+.+.+.+
T Consensus 138 ------~~~~~~~i~~SAT~~~~~~~~~~-------~~~~~~~~~---~~~p--~~~~---------~~~~~~l~~---- 186 (451)
T 2jlq_A 138 ------EMGEAAAIFMTATPPGSTDPFPQ-------SNSPIEDIE---REIP--ERSW---------NTGFDWITD---- 186 (451)
T ss_dssp ------HTTSCEEEEECSSCTTCCCSSCC-------CSSCEEEEE---CCCC--SSCC---------SSSCHHHHH----
T ss_pred ------cCCCceEEEEccCCCccchhhhc-------CCCceEecC---ccCC--chhh---------HHHHHHHHh----
Confidence 12468999999999764433211 011111000 0000 0000 011222222
Q ss_pred cCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEec
Q 045757 421 GAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 421 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~ 499 (548)
..+++||||++++.++.+++.|++.++.+..+|+++. .++++.|+ ++.+|||||+++++|+|+|+ ++||++|
T Consensus 187 --~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 187 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred --CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 3569999999999999999999999999999999753 57899999 67799999999999999999 9999998
Q ss_pred --------------------CCCCHHHHHHHhcccccCCC-cceEEEEeecC
Q 045757 500 --------------------FATSAVDFLHRVGRTARAGQ-YGLVTSLYTES 530 (548)
Q Consensus 500 --------------------~p~s~~~~~Qr~GR~gR~g~-~G~~i~~~~~~ 530 (548)
.|.|..+|+||+||+||.|. .|.+++|+...
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 99999999999999999998 88998887543
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.8e-39 Score=339.12 Aligned_cols=311 Identities=14% Similarity=0.161 Sum_probs=223.4
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..|+++|.++++.+++++++++++|||+|||++|++++...+... ++++|||+|+++|+.|+.+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------------~~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------------EGKILIIVPTTALTTQMAD 175 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----------------SSEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----------------CCeEEEEECcHHHHHHHHH
Confidence 379999999999999999999999999999999998888776432 4599999999999999999
Q ss_pred HHHHhhcccCCCcEEEEEEeCCCCccC---CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHH
Q 045757 185 MANALSADNGEPLVRAVAVCGGQGWPI---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQ 261 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~ 261 (548)
.++++....+ ..+..+.|+..... ..++|+|+||+.+.... ...+.++++||+||+|++.. ..
T Consensus 176 ~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~-------~~~~~~~~liIiDE~H~~~~----~~ 241 (510)
T 2oca_A 176 DFVDYRLFSH---AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-------KEWFSQFGMMMNDECHLATG----KS 241 (510)
T ss_dssp HHHHTTSSCG---GGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSC-------GGGGGGEEEEEEETGGGCCH----HH
T ss_pred HHHHhhcCCc---cceEEEecCCccccccccCCcEEEEeHHHHhhch-------hhhhhcCCEEEEECCcCCCc----cc
Confidence 9998854432 56777777765432 67999999999875431 12367899999999998754 23
Q ss_pred HHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhH
Q 045757 262 VIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWR 341 (548)
Q Consensus 262 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (548)
+..++..+
T Consensus 242 ~~~il~~~------------------------------------------------------------------------ 249 (510)
T 2oca_A 242 ISSIISGL------------------------------------------------------------------------ 249 (510)
T ss_dssp HHHHGGGC------------------------------------------------------------------------
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 33443332
Q ss_pred HHHhhhcccceeEEEeeccCCCccchhhh--hhhhcCCCCc---ccccccccccCcccccce------------------
Q 045757 342 RVRKNYQRSKQYIFVAATLPINGKKTAGA--VLKQMFPDAD---WISGNYLHFHNPRLKEKW------------------ 398 (548)
Q Consensus 342 ~~~~~~~~~~q~v~~SAT~~~~~~~~~~~--~l~~~~~~~~---~~~~~~~~~~~~~~~~~~------------------ 398 (548)
....+++++|||++......... .......... .+...... ...+....
T Consensus 250 ------~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (510)
T 2oca_A 250 ------NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVT--ELKINSIFLRYPDEFTTKLKGKTYQE 321 (510)
T ss_dssp ------TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC-----------CCEEEEEEEECCHHHHHHHTTCCHHH
T ss_pred ------ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCC--CceEEEEeecCChHHhccccccchHH
Confidence 24578999999996554332211 1111000000 00000000 00000000
Q ss_pred ---eeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC
Q 045757 399 ---IEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG 474 (548)
Q Consensus 399 ---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~ 474 (548)
.......+...+.+.+..... ..+.++||||+ ...++.+++.|.+.+..+..+||+++..+|.++++.|+ ++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 322 EIKIITGLSKRNKWIAKLAIKLAQ--KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHT--TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHh--cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 001111223334444444321 23455666666 88999999999999889999999999999999999999 677
Q ss_pred cEEEEe-CcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEee
Q 045757 475 GVFVCT-DAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528 (548)
Q Consensus 475 ~vLv~T-~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~ 528 (548)
+||||| +++++|+|+|++++||++++|.+...|.||+||+||.|+.|.++.+++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998876666665
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-38 Score=353.98 Aligned_cols=317 Identities=18% Similarity=0.184 Sum_probs=235.1
Q ss_pred cCCCHHHHHHH-HHCCCCCCcHHHHhhhhcccC----CC--cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 89 LGLSDRLIRAL-ENSGFGRPSIVQAASVGPVLS----GK--DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 89 l~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~----g~--~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
++.+....+.+ ..++| .++|+|.++++.++. |+ +++++++||+|||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 44566666666 45677 579999999999886 65 9999999999999999988877652
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChh
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPK 231 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~ 231 (548)
.+.+++|++||++|+.|+++.+.+.....+ +++..+++..... .+.++|+|+||+.+...+
T Consensus 651 ---~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~---i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~--- 721 (1151)
T 2eyq_A 651 ---NHKQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV--- 721 (1151)
T ss_dssp ---TTCEEEEECSSHHHHHHHHHHHHHHSTTTT---CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC---
T ss_pred ---hCCeEEEEechHHHHHHHHHHHHHHhhcCC---CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc---
Confidence 256899999999999999999998876655 6777777764432 356999999998774322
Q ss_pred hhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhc
Q 045757 232 RRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYI 311 (548)
Q Consensus 232 ~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (548)
.+.++++||+||+|++ +......+..+
T Consensus 722 ------~~~~l~lvIiDEaH~~-----g~~~~~~l~~l------------------------------------------ 748 (1151)
T 2eyq_A 722 ------KFKDLGLLIVDEEHRF-----GVRHKERIKAM------------------------------------------ 748 (1151)
T ss_dssp ------CCSSEEEEEEESGGGS-----CHHHHHHHHHH------------------------------------------
T ss_pred ------cccccceEEEechHhc-----ChHHHHHHHHh------------------------------------------
Confidence 3678999999999984 22233333322
Q ss_pred ccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccC
Q 045757 312 SDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHN 391 (548)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 391 (548)
....+++++|||+.+.........+. +...+.... ...
T Consensus 749 ------------------------------------~~~~~vl~lSATp~p~~l~~~~~~~~----~~~~i~~~~--~~r 786 (1151)
T 2eyq_A 749 ------------------------------------RANVDILTLTATPIPRTLNMAMSGMR----DLSIIATPP--ARR 786 (1151)
T ss_dssp ------------------------------------HTTSEEEEEESSCCCHHHHHHHTTTS----EEEECCCCC--CBC
T ss_pred ------------------------------------cCCCCEEEEcCCCChhhHHHHHhcCC----CceEEecCC--CCc
Confidence 24578999999986432222111111 111111100 001
Q ss_pred cccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHh
Q 045757 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVN 469 (548)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~ 469 (548)
..+........ ...+.+.+...+ ..+++++|||++++.++.+++.|++. +..+..+||+|+..+|.++++.
T Consensus 787 ~~i~~~~~~~~----~~~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~ 859 (1151)
T 2eyq_A 787 LAVKTFVREYD----SMVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 859 (1151)
T ss_dssp BCEEEEEEECC----HHHHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHH
T ss_pred cccEEEEecCC----HHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 11122222111 122333333322 35789999999999999999999988 7899999999999999999999
Q ss_pred hc-cCCcEEEEeCcccccCCCCCCCEEEEecC-CCCHHHHHHHhcccccCCCcceEEEEeecCc
Q 045757 470 FQ-EKGGVFVCTDAAARGIDIPNVSHVIQADF-ATSAVDFLHRVGRTARAGQYGLVTSLYTESN 531 (548)
Q Consensus 470 f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~-p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~ 531 (548)
|+ ++.+|||||+++++|+|+|++++||+++. +.+..+|.||+||+||.|+.|.|++++.+.+
T Consensus 860 F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 860 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99 67799999999999999999999999988 5799999999999999999999999997753
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=9.4e-40 Score=331.91 Aligned_cols=283 Identities=17% Similarity=0.196 Sum_probs=199.3
Q ss_pred cccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCC
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~ 196 (548)
.+++|+|++++||||||||++|++|+++.+... +.++||++||++|+.|+++.++.+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------------~~~~lil~Ptr~La~Q~~~~l~~~~------ 61 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------------RLRTLVLAPTRVVLSEMKEAFHGLD------ 61 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------------TCCEEEEESSHHHHHHHHHHTTTSC------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------------CCeEEEEcchHHHHHHHHHHHhcCC------
Confidence 567899999999999999999999999987654 5799999999999999999887432
Q ss_pred cEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhh----ccccccCeeEEEEecchhhccCChHHHHHHHHhhhhcc
Q 045757 197 LVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRR----RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272 (548)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~----~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~ 272 (548)
+. ...+.. -.++||+.+.+.+...... ....+.++++||+||+|++ +.++...+..+...+.
T Consensus 62 -v~--~~~~~~--------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-- 127 (440)
T 1yks_A 62 -VK--FHTQAF--------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-- 127 (440)
T ss_dssp -EE--EESSCC--------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--
T ss_pred -eE--Eecccc--------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--
Confidence 22 111110 0378888877666543211 1112678999999999987 3333222222221110
Q ss_pred HHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccce
Q 045757 273 EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 352 (548)
....|
T Consensus 128 ---------------------------------------------------------------------------~~~~~ 132 (440)
T 1yks_A 128 ---------------------------------------------------------------------------ANESA 132 (440)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------cCCce
Confidence 13589
Q ss_pred eEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeC
Q 045757 353 YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432 (548)
Q Consensus 353 ~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~ 432 (548)
+++||||++.....+.... ..+. .+.. .+.. .....++..+.+ .++++||||+
T Consensus 133 ~l~~SAT~~~~~~~~~~~~--------~~~~---------~~~~---~~~~-~~~~~~~~~l~~------~~~~~lVF~~ 185 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHSN--------GEIE---------DVQT---DIPS-EPWNTGHDWILA------DKRPTAWFLP 185 (440)
T ss_dssp EEEECSSCTTCCCSSCCCS--------SCEE---------EEEC---CCCS-SCCSSSCHHHHH------CCSCEEEECS
T ss_pred EEEEeCCCCchhhhhhhcC--------CCee---------Eeee---ccCh-HHHHHHHHHHHh------cCCCEEEEeC
Confidence 9999999986644332210 0000 0000 0000 011112223332 3679999999
Q ss_pred ChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE--------------
Q 045757 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ-------------- 497 (548)
Q Consensus 433 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~-------------- 497 (548)
+++.++.+++.|++.++.+..+|| ++|.++++.|+ ++.+|||||+++++|||+| +++||+
T Consensus 186 s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~ 260 (440)
T 1yks_A 186 SIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGR 260 (440)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeeccccc
Confidence 999999999999999999999999 46889999999 7779999999999999999 999996
Q ss_pred -----ecCCCCHHHHHHHhcccccC-CCcceEEEEe---ecCchhHHHHHHHHH
Q 045757 498 -----ADFATSAVDFLHRVGRTARA-GQYGLVTSLY---TESNRDLVDTIRRAA 542 (548)
Q Consensus 498 -----~~~p~s~~~~~Qr~GR~gR~-g~~G~~i~~~---~~~~~~~~~~i~~~~ 542 (548)
++.|.+..+|+||+||+||. |+.|.|++|+ ++.+...++.++..+
T Consensus 261 ~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 261 KVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 88999999999999999998 6899999996 678888888888765
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.5e-40 Score=349.29 Aligned_cols=303 Identities=17% Similarity=0.156 Sum_probs=213.9
Q ss_pred HHHHCCCC-----CCcHHHH-----hhhhccc------CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 98 ALENSGFG-----RPSIVQA-----ASVGPVL------SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 98 ~l~~~~~~-----~~~~~Q~-----~~i~~i~------~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
++..+||. .|+++|. ++|+.++ +|+|++++||||||||++|++|+++.+...
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------ 269 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------ 269 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------
Confidence 33455666 8999999 9999988 899999999999999999999999987654
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhh----ccc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRR----RME 237 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~----~~~ 237 (548)
+.++||++||++|+.|+.+.++.+. +. ...+... .++||+++.+++...... ...
T Consensus 270 ----~~~~lilaPTr~La~Q~~~~l~~~~-------i~--~~~~~l~--------~v~tp~~ll~~l~~~~l~~~l~~~~ 328 (673)
T 2wv9_A 270 ----RLRTAVLAPTRVVAAEMAEALRGLP-------VR--YLTPAVQ--------REHSGNEIVDVMCHATLTHRLMSPL 328 (673)
T ss_dssp ----TCCEEEEESSHHHHHHHHHHTTTSC-------CE--ECCC-----------CCCCSCCCEEEEEHHHHHHHHHSSS
T ss_pred ----CCcEEEEccHHHHHHHHHHHHhcCC-------ee--eeccccc--------ccCCHHHHHHHHHhhhhHHHHhccc
Confidence 6799999999999999998877542 21 1111000 156666665554332211 011
Q ss_pred cccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.+.++++||+||+|++ +..+...+..+...++
T Consensus 329 ~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~----------------------------------------------- 360 (673)
T 2wv9_A 329 RVPNYNLFVMDEAHFT-DPASIAARGYIATRVE----------------------------------------------- 360 (673)
T ss_dssp CCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred ccccceEEEEeCCccc-CccHHHHHHHHHHhcc-----------------------------------------------
Confidence 3678999999999987 1111122222211110
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
....|+++||||++.....+.... .+ ... +...
T Consensus 361 ------------------------------~~~~~vl~~SAT~~~~i~~~~~~~----~~-i~~------------v~~~ 393 (673)
T 2wv9_A 361 ------------------------------AGEAAAIFMTATPPGTSDPFPDTN----SP-VHD------------VSSE 393 (673)
T ss_dssp ------------------------------TTSCEEEEECSSCTTCCCSSCCCS----SC-EEE------------EECC
T ss_pred ------------------------------ccCCcEEEEcCCCChhhhhhcccC----Cc-eEE------------Eeee
Confidence 135899999999986544332210 00 000 0000
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
... .....++..+. ..++++||||++++.++.+++.|++.++.+..+||+ +|.++++.|+ ++.+|
T Consensus 394 ---~~~-~~~~~~l~~l~------~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~V 459 (673)
T 2wv9_A 394 ---IPD-RAWSSGFEWIT------DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDF 459 (673)
T ss_dssp ---CCS-SCCSSCCHHHH------SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSE
T ss_pred ---cCH-HHHHHHHHHHH------hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceE
Confidence 000 01111122222 247899999999999999999999999999999994 7899999999 67799
Q ss_pred EEEeCcccccCCCCCCCEEEE--------------------ecCCCCHHHHHHHhcccccC-CCcceEEEEe---ecCch
Q 045757 477 FVCTDAAARGIDIPNVSHVIQ--------------------ADFATSAVDFLHRVGRTARA-GQYGLVTSLY---TESNR 532 (548)
Q Consensus 477 Lv~T~~~~~GiDip~v~~VI~--------------------~~~p~s~~~~~Qr~GR~gR~-g~~G~~i~~~---~~~~~ 532 (548)
||||+++++|||+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++|+ ++.+.
T Consensus 460 LVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 460 VITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp EEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred EEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 99999999999999 999998 56899999999999999999 7899999996 57788
Q ss_pred hHHHHHHHHHH
Q 045757 533 DLVDTIRRAAK 543 (548)
Q Consensus 533 ~~~~~i~~~~~ 543 (548)
..++.++..+.
T Consensus 539 ~~l~~ie~~~~ 549 (673)
T 2wv9_A 539 MLAHWTEAKIL 549 (673)
T ss_dssp TBHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78888877653
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-38 Score=328.88 Aligned_cols=298 Identities=19% Similarity=0.267 Sum_probs=214.9
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.|+|+|.++++.+++++++++++|||+|||++|+.++... +.++|||||+++|+.|+.+.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------~~~~Lvl~P~~~L~~Q~~~~ 152 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKER 152 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------------CSCEEEEESSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEECCHHHHHHHHHH
Confidence 7999999999999999999999999999999998887653 46899999999999999999
Q ss_pred HHHhhcccCCCcEE-EEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHH
Q 045757 186 ANALSADNGEPLVR-AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIR 264 (548)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~ 264 (548)
+.++ + ++ +..+.|+.. ...+|+|+||+.+...+.. ...++++||+||+|++.+..+..
T Consensus 153 ~~~~----~---~~~v~~~~g~~~---~~~~Ivv~T~~~l~~~~~~-------~~~~~~liIvDEaH~~~~~~~~~---- 211 (472)
T 2fwr_A 153 LGIF----G---EEYVGEFSGRIK---ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYVQ---- 211 (472)
T ss_dssp GGGG----C---GGGEEEBSSSCB---CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEETGGGTTSTTTHH----
T ss_pred HHhC----C---CcceEEECCCcC---CcCCEEEEEcHHHHHHHHH-------hcCCCCEEEEECCcCCCChHHHH----
Confidence 8885 2 56 777777653 3578999999999765531 12458999999999988766643
Q ss_pred HHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHH
Q 045757 265 LINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVR 344 (548)
Q Consensus 265 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (548)
++..+
T Consensus 212 ~~~~~--------------------------------------------------------------------------- 216 (472)
T 2fwr_A 212 IAQMS--------------------------------------------------------------------------- 216 (472)
T ss_dssp HHHTC---------------------------------------------------------------------------
T ss_pred HHHhc---------------------------------------------------------------------------
Confidence 22221
Q ss_pred hhhcccceeEEEeeccCCCccch---------------hhhhhhhcCCCCcc--ccccc---------------------
Q 045757 345 KNYQRSKQYIFVAATLPINGKKT---------------AGAVLKQMFPDADW--ISGNY--------------------- 386 (548)
Q Consensus 345 ~~~~~~~q~v~~SAT~~~~~~~~---------------~~~~l~~~~~~~~~--~~~~~--------------------- 386 (548)
...+++++|||+....... ...+...+...... +....
T Consensus 217 ----~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (472)
T 2fwr_A 217 ----IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA 292 (472)
T ss_dssp ----CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS
T ss_pred ----CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2467899999987332111 00000000000000 00000
Q ss_pred --ccc-cCcccccc---------------------eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHH
Q 045757 387 --LHF-HNPRLKEK---------------------WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTK 442 (548)
Q Consensus 387 --~~~-~~~~~~~~---------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~ 442 (548)
... ........ .+......+...+.+.+.. ..++++||||+++..++.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-----~~~~k~lvF~~~~~~~~~l~~ 367 (472)
T 2fwr_A 293 RGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-----HRKDKIIIFTRHNELVYRISK 367 (472)
T ss_dssp CCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-----TSSSCBCCBCSCHHHHHHHHH
T ss_pred cCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHH
Confidence 000 00000000 0012233445555555554 357899999999999999999
Q ss_pred HHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCc-
Q 045757 443 ILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY- 520 (548)
Q Consensus 443 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~- 520 (548)
.|. +..+||+++..+|.++++.|+ ++.+|||||+++++|+|+|++++||+++.|+|+..|.||+||+||.|+.
T Consensus 368 ~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 368 VFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp HTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTT
T ss_pred HhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCC
Confidence 883 668999999999999999999 7789999999999999999999999999999999999999999999854
Q ss_pred --ceEEEEeecCchh
Q 045757 521 --GLVTSLYTESNRD 533 (548)
Q Consensus 521 --G~~i~~~~~~~~~ 533 (548)
..++.+++++..+
T Consensus 443 ~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 443 KEAVLYELISRGTGE 457 (472)
T ss_dssp CCEEEEEEEECSCC-
T ss_pred ceEEEEEEEeCCCch
Confidence 3455677765433
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-38 Score=330.16 Aligned_cols=290 Identities=17% Similarity=0.122 Sum_probs=209.0
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.++++|.++++.+.++++++++||||||||++|.+++++. +.++||++||++|+.|+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------------g~~vLVl~PTReLA~Qia~~ 276 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------------GYKVLVLNPSVAATLGFGAY 276 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------------TCCEEEEESCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------------CCeEEEEcchHHHHHHHHHH
Confidence 4566777777777788999999999999999999888752 45899999999999999987
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRL 265 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i 265 (548)
+.+... ..+....|+.. ...+++|+|+||++|+.. ....+.++++||+||||+ ++.++...+..+
T Consensus 277 l~~~~g------~~vg~~vG~~~-~~~~~~IlV~TPGrLl~~-------~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~I 341 (666)
T 3o8b_A 277 MSKAHG------IDPNIRTGVRT-ITTGAPVTYSTYGKFLAD-------GGCSGGAYDIIICDECHS-TDSTTILGIGTV 341 (666)
T ss_dssp HHHHHS------CCCEEECSSCE-ECCCCSEEEEEHHHHHHT-------TSCCTTSCSEEEETTTTC-CSHHHHHHHHHH
T ss_pred HHHHhC------CCeeEEECcEe-ccCCCCEEEECcHHHHhC-------CCcccCcccEEEEccchh-cCccHHHHHHHH
Confidence 765542 33444555543 467799999999998421 123467899999999985 455666666666
Q ss_pred HhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHh
Q 045757 266 INMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRK 345 (548)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (548)
++.++.
T Consensus 342 l~~l~~-------------------------------------------------------------------------- 347 (666)
T 3o8b_A 342 LDQAET-------------------------------------------------------------------------- 347 (666)
T ss_dssp HHHTTT--------------------------------------------------------------------------
T ss_pred HHhhhh--------------------------------------------------------------------------
Confidence 655431
Q ss_pred hhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCC
Q 045757 346 NYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETS 425 (548)
Q Consensus 346 ~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 425 (548)
.+....+++|||++..... ..+....+.... ...+. ....... + ....++
T Consensus 348 --~~~~llil~SAT~~~~i~~--------~~p~i~~v~~~~----~~~i~----~~~~~~~-------l-----~~~~~~ 397 (666)
T 3o8b_A 348 --AGARLVVLATATPPGSVTV--------PHPNIEEVALSN----TGEIP----FYGKAIP-------I-----EAIRGG 397 (666)
T ss_dssp --TTCSEEEEEESSCTTCCCC--------CCTTEEEEECBS----CSSEE----ETTEEEC-------G-----GGSSSS
T ss_pred --cCCceEEEECCCCCccccc--------CCcceEEEeecc----cchhH----HHHhhhh-------h-----hhccCC
Confidence 0123367789999853221 000000000000 00000 0000000 0 013578
Q ss_pred cEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCCEEE---------
Q 045757 426 RTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVI--------- 496 (548)
Q Consensus 426 ~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~~VI--------- 496 (548)
++||||++++.++.+++.|++.++.+..+||+|++++ .++++.+|||||+++++|||+| +++||
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~V 470 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQT 470 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccc
Confidence 9999999999999999999999999999999999765 2346669999999999999997 99999
Q ss_pred -Eec-----------CCCCHHHHHHHhcccccCCCcceEEEEeecCchhH--H--HHHHHHHH
Q 045757 497 -QAD-----------FATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDL--V--DTIRRAAK 543 (548)
Q Consensus 497 -~~~-----------~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~--~--~~i~~~~~ 543 (548)
||| .|.|..+|+||+||+|| |+.|. +.|+++.+... + ..+++..+
T Consensus 471 iNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 471 VDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp EECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred cccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 566 89999999999999999 99999 99999987665 4 55555544
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-37 Score=335.07 Aligned_cols=337 Identities=17% Similarity=0.163 Sum_probs=235.7
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccC-CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLS-GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
...+|+++++++.+.+.++..+ ..|++.|+++++.++. +++++++||||+|||+ ++|++... ..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~-~~----------- 134 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLF-DE----------- 134 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHH-HH-----------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHH-hc-----------
Confidence 3456999999999999998888 6899999999988775 5689999999999999 45655221 11
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhc-ccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSA-DNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFV 239 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 239 (548)
.....+..++|++|+++|+.|+.+.+..... ..+ ..+............+.+|+++||+++.+.+... ..+
T Consensus 135 ~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~---~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-----~~l 206 (773)
T 2xau_A 135 MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG---EEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-----HDL 206 (773)
T ss_dssp CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT---TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-----TTC
T ss_pred cccCCCceEEecCchHHHHHHHHHHHHHHhCCchh---heecceeccccccCCCCCEEEECHHHHHHHHhhC-----ccc
Confidence 0001245699999999999999876654432 111 1111111122223467899999999998776432 247
Q ss_pred cCeeEEEEecchh-hccCCh-HHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCC
Q 045757 240 RGVKYVVFDEADM-LLCGSF-QNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNF 317 (548)
Q Consensus 240 ~~~~~vV~DEah~-l~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (548)
.++++||+||+|. .++..+ ...+..+...
T Consensus 207 ~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~------------------------------------------------- 237 (773)
T 2xau_A 207 SRYSCIILDEAHERTLATDILMGLLKQVVKR------------------------------------------------- 237 (773)
T ss_dssp TTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred cCCCEEEecCccccccchHHHHHHHHHHHHh-------------------------------------------------
Confidence 8899999999994 443221 1112222111
Q ss_pred CCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccc
Q 045757 318 EGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEK 397 (548)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (548)
....|++++|||++. .. ...++ .....+...... ..+...
T Consensus 238 ------------------------------~~~~~iIl~SAT~~~--~~-l~~~~----~~~~vi~v~gr~---~pv~~~ 277 (773)
T 2xau_A 238 ------------------------------RPDLKIIIMSATLDA--EK-FQRYF----NDAPLLAVPGRT---YPVELY 277 (773)
T ss_dssp ------------------------------CTTCEEEEEESCSCC--HH-HHHHT----TSCCEEECCCCC---CCEEEE
T ss_pred ------------------------------CCCceEEEEeccccH--HH-HHHHh----cCCCcccccCcc---cceEEE
Confidence 135799999999952 22 22222 211111111100 112223
Q ss_pred eeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHH-----------cCCceEEecCCCCHHHHHHH
Q 045757 398 WIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT-----------AGIECYCYHKDLSLEERAKT 466 (548)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~ 466 (548)
+............+..+.+.... ..++++||||+++..++.+++.|.+ .++.+..+||+|+.++|.++
T Consensus 278 ~~~~~~~~~~~~~l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 278 YTPEFQRDYLDSAIRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred EecCCchhHHHHHHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 33333333444444444443221 3578999999999999999999985 47789999999999999999
Q ss_pred HHhhc-----cC-CcEEEEeCcccccCCCCCCCEEEEecC------------------CCCHHHHHHHhcccccCCCcce
Q 045757 467 LVNFQ-----EK-GGVFVCTDAAARGIDIPNVSHVIQADF------------------ATSAVDFLHRVGRTARAGQYGL 522 (548)
Q Consensus 467 ~~~f~-----~~-~~vLv~T~~~~~GiDip~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~G~ 522 (548)
++.|+ .+ .+|||||+++++|||+|++++||+++. |.|..+|+||+|||||. .+|.
T Consensus 357 ~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~ 435 (773)
T 2xau_A 357 FEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGK 435 (773)
T ss_dssp GSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEE
T ss_pred HhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCE
Confidence 99997 44 499999999999999999999999887 89999999999999999 8999
Q ss_pred EEEEeecCch
Q 045757 523 VTSLYTESNR 532 (548)
Q Consensus 523 ~i~~~~~~~~ 532 (548)
|+.||++.+.
T Consensus 436 ~~~l~~~~~~ 445 (773)
T 2xau_A 436 CFRLYTEEAF 445 (773)
T ss_dssp EEESSCHHHH
T ss_pred EEEEecHHHh
Confidence 9999988754
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.8e-38 Score=319.09 Aligned_cols=284 Identities=18% Similarity=0.145 Sum_probs=193.7
Q ss_pred hhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccC
Q 045757 115 VGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNG 194 (548)
Q Consensus 115 i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~ 194 (548)
...+.+|++++++||||||||++|++|+++.+... +.++||++||++|+.|+.+.+..+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------------~~~~lvl~Ptr~La~Q~~~~l~g~----- 73 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------------RLRTAVLAPTRVVAAEMAEALRGL----- 73 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------------TCCEEEEECSHHHHHHHHHHTTTS-----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------------CCcEEEECchHHHHHHHHHHhcCc-----
Confidence 45566789999999999999999999999988654 679999999999999999988622
Q ss_pred CCcEEEEEEeCCCC-ccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccH
Q 045757 195 EPLVRAVAVCGGQG-WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDE 273 (548)
Q Consensus 195 ~~~~~~~~~~g~~~-~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~ 273 (548)
.+....+... ....+..+.++|.+.+...+... ..+.++++||+||||++ +..+......+....
T Consensus 74 ----~v~~~~~~~~~~~t~~~~i~~~~~~~l~~~l~~~-----~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~---- 139 (459)
T 2z83_A 74 ----PVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSP-----NRVPNYNLFVMDEAHFT-DPASIAARGYIATKV---- 139 (459)
T ss_dssp ----CEEECC--------CCCSEEEEEHHHHHHHHHSC-----C-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHH----
T ss_pred ----eEeEEecccccCCCCCcEEEEEchHHHHHHhhcc-----ccccCCcEEEEECCccC-CchhhHHHHHHHHHh----
Confidence 1211111111 11234457778888775544221 23778999999999973 110111111111000
Q ss_pred HHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhccccee
Q 045757 274 KQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQY 353 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 353 (548)
.....|+
T Consensus 140 -------------------------------------------------------------------------~~~~~~~ 146 (459)
T 2z83_A 140 -------------------------------------------------------------------------ELGEAAA 146 (459)
T ss_dssp -------------------------------------------------------------------------HTTSCEE
T ss_pred -------------------------------------------------------------------------ccCCccE
Confidence 0146899
Q ss_pred EEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCC
Q 045757 354 IFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANT 433 (548)
Q Consensus 354 v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s 433 (548)
++||||++.....+... . ..... +... .. ......+.+.+.+ ..+++||||++
T Consensus 147 il~SAT~~~~~~~~~~~----~--~pi~~-----------~~~~---~~-~~~~~~~~~~l~~------~~~~~LVF~~s 199 (459)
T 2z83_A 147 IFMTATPPGTTDPFPDS----N--APIHD-----------LQDE---IP-DRAWSSGYEWITE------YAGKTVWFVAS 199 (459)
T ss_dssp EEECSSCTTCCCSSCCC----S--SCEEE-----------EECC---CC-SSCCSSCCHHHHH------CCSCEEEECSC
T ss_pred EEEEcCCCcchhhhccC----C--CCeEE-----------eccc---CC-cchhHHHHHHHHh------cCCCEEEEeCC
Confidence 99999998654332211 0 00000 0000 00 0000111222332 36799999999
Q ss_pred hhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEE---------------
Q 045757 434 VDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQ--------------- 497 (548)
Q Consensus 434 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~--------------- 497 (548)
++.++.+++.|++.++.+..+|++ +|.++++.|+ ++.+|||||+++++|||+|+ ++||+
T Consensus 200 ~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 200 VKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSC
T ss_pred hHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccc
Confidence 999999999999999999999995 7888999999 67799999999999999999 99999
Q ss_pred -----ecCCCCHHHHHHHhcccccCCC-cceEEEEeecC--chhHHHHH
Q 045757 498 -----ADFATSAVDFLHRVGRTARAGQ-YGLVTSLYTES--NRDLVDTI 538 (548)
Q Consensus 498 -----~~~p~s~~~~~Qr~GR~gR~g~-~G~~i~~~~~~--~~~~~~~i 538 (548)
++.|.|..+|+||+||+||.|+ +|.+++|+.+. +...+..+
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 6799999999999999999997 89999999886 44333333
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=7e-37 Score=324.61 Aligned_cols=327 Identities=15% Similarity=0.175 Sum_probs=193.3
Q ss_pred CCcHHHHhhhhcccC----C-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 106 RPSIVQAASVGPVLS----G-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~----g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.|+++|.++++.+++ | ++++++++||+|||+++ ++++..+...... ......+.++|||+|+++|+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~-------~~~~~~~~~vlil~P~~~L~~ 249 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWN-------RTGDYRKPRILFLADRNVLVD 249 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCC-------SSCSSSCCCEEEEEC------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccc-------cccccCCCeEEEEeCCHHHHH
Confidence 699999999998875 4 67999999999999995 4555555543100 011124689999999999999
Q ss_pred HHH-HHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 181 QVV-RMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 181 q~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
|+. +.++.+.. .+..+.++ ....+.+|+|+||++|.................+++||+||||++.... .
T Consensus 250 Q~~~~~~~~~~~-------~~~~~~~~--~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~ 319 (590)
T 3h1t_A 250 DPKDKTFTPFGD-------ARHKIEGG--KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-N 319 (590)
T ss_dssp -----CCTTTCS-------SEEECCC----CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHHHHHhcch-------hhhhhhcc--CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-h
Confidence 998 76666542 22223322 2345789999999999876543322222335678999999999986432 1
Q ss_pred HHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchh
Q 045757 260 NQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKD 339 (548)
Q Consensus 260 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (548)
..+..++..+
T Consensus 320 ~~~~~il~~~---------------------------------------------------------------------- 329 (590)
T 3h1t_A 320 SNWREILEYF---------------------------------------------------------------------- 329 (590)
T ss_dssp --CHHHHHHS----------------------------------------------------------------------
T ss_pred HHHHHHHHhC----------------------------------------------------------------------
Confidence 2233333332
Q ss_pred hHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcc---cccccccc---cC---------------------c
Q 045757 340 WRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADW---ISGNYLHF---HN---------------------P 392 (548)
Q Consensus 340 ~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~---~~---------------------~ 392 (548)
...+++++|||+..........++......... +....... .. .
T Consensus 330 ---------~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 330 ---------EPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp ---------TTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred ---------CcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 246789999998754332222222110000000 00000000 00 0
Q ss_pred cccccee-------eecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCc--------eEEecCC
Q 045757 393 RLKEKWI-------EVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIE--------CYCYHKD 457 (548)
Q Consensus 393 ~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~--------~~~~~~~ 457 (548)
.+..... .+....+...+.+.+.+.+......+++||||+++..++.+++.|.+.+.. +..+||+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 0000000 001122334444445444443456789999999999999999999876543 7789999
Q ss_pred CCHHHHHHHHHhhc-cCCc---EEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCC--cceEEEEeecC
Q 045757 458 LSLEERAKTLVNFQ-EKGG---VFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQ--YGLVTSLYTES 530 (548)
Q Consensus 458 ~~~~~r~~~~~~f~-~~~~---vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~--~G~~i~~~~~~ 530 (548)
++ ++|.++++.|+ ++.+ |||||+++++|+|+|++++||++++|.|...|+||+||+||.|. .+..+.+++.-
T Consensus 481 ~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 481 EG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred Ch-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 75 47999999999 4434 89999999999999999999999999999999999999999875 34444455443
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.4e-36 Score=306.30 Aligned_cols=281 Identities=17% Similarity=0.161 Sum_probs=191.2
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEE
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 199 (548)
.|++++++||||||||++|++|+++.+... +.++||++||++|+.|+.+.+. + +.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------------g~~~lvl~Pt~~La~Q~~~~~~------~---~~ 55 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK----------------RLRTVILAPTRVVASEMYEALR------G---EP 55 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------------TCCEEEEESSHHHHHHHHHHTT------T---SC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------------CCCEEEECcHHHHHHHHHHHhC------C---Ce
Confidence 378999999999999999999999777654 6799999999999999988765 2 33
Q ss_pred EEEEeCCC-CccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhh
Q 045757 200 AVAVCGGQ-GWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSR 278 (548)
Q Consensus 200 ~~~~~g~~-~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~ 278 (548)
+....|+. .....+..+.+.|.+.+...+.. ...+.++++||+||+|++ ..++......+....
T Consensus 56 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~--------- 120 (431)
T 2v6i_A 56 IRYMTPAVQSERTGNEIVDFMCHSTFTMKLLQ-----GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV--------- 120 (431)
T ss_dssp EEEC---------CCCSEEEEEHHHHHHHHHH-----TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH---------
T ss_pred EEEEecCccccCCCCceEEEEchHHHHHHHhc-----CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh---------
Confidence 44444432 22233456777788877544432 123778999999999986 222222322222211
Q ss_pred hcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEee
Q 045757 279 MNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAA 358 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SA 358 (548)
.....|+++|||
T Consensus 121 --------------------------------------------------------------------~~~~~~~l~~SA 132 (431)
T 2v6i_A 121 --------------------------------------------------------------------SMGDAGAIFMTA 132 (431)
T ss_dssp --------------------------------------------------------------------HTTSCEEEEEES
T ss_pred --------------------------------------------------------------------hCCCCcEEEEeC
Confidence 124689999999
Q ss_pred ccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHH
Q 045757 359 TLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVY 438 (548)
Q Consensus 359 T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~ 438 (548)
|++.....+.... .+ ...+. .. . .......+.+.+.+ .++++||||++++.++
T Consensus 133 T~~~~~~~~~~~~----~~-i~~~~------------~~---~-~~~~~~~~~~~l~~------~~~~~lVF~~~~~~~~ 185 (431)
T 2v6i_A 133 TPPGTTEAFPPSN----SP-IIDEE------------TR---I-PDKAWNSGYEWITE------FDGRTVWFVHSIKQGA 185 (431)
T ss_dssp SCTTCCCSSCCCS----SC-CEEEE------------CC---C-CSSCCSSCCHHHHS------CSSCEEEECSSHHHHH
T ss_pred CCCcchhhhcCCC----Cc-eeecc------------cc---C-CHHHHHHHHHHHHc------CCCCEEEEeCCHHHHH
Confidence 9986433222110 00 00000 00 0 00111112223322 3568999999999999
Q ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCE-----------------EEEecC
Q 045757 439 AVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSH-----------------VIQADF 500 (548)
Q Consensus 439 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~-----------------VI~~~~ 500 (548)
.+++.|++.++.+..+||+ +|.++++.|+ ++.+|||||+++++|+|+| +.+ ||+++.
T Consensus 186 ~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~ 260 (431)
T 2v6i_A 186 EIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPI 260 (431)
T ss_dssp HHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccc
Confidence 9999999999999999997 6788999999 7789999999999999999 655 678899
Q ss_pred CCCHHHHHHHhcccccCCC-cceEEEEe---ecCchhHHHHHHH
Q 045757 501 ATSAVDFLHRVGRTARAGQ-YGLVTSLY---TESNRDLVDTIRR 540 (548)
Q Consensus 501 p~s~~~~~Qr~GR~gR~g~-~G~~i~~~---~~~~~~~~~~i~~ 540 (548)
|.+..+|.||+||+||.|. .|.++++. ++.+...+..++.
T Consensus 261 p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (431)
T 2v6i_A 261 AITPASAAQRRGRIGRNPEKLGDIYAYSGNVSSDNEGHVSWTEA 304 (431)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCCEEEECSCCCCCCTTBHHHHHH
T ss_pred cCCHHHHHHhhhccCCCCCCCCeEEEEcCCCCCccchhHHHHHH
Confidence 9999999999999999985 45555554 2334444444443
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.5e-35 Score=323.67 Aligned_cols=136 Identities=19% Similarity=0.335 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHhhc-cC--CcEEEE
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKT-AGIECYCYHKDLSLEERAKTLVNFQ-EK--GGVFVC 479 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~-~~--~~vLv~ 479 (548)
..|...+.+.+.. ..+.++||||+++..++.+++.|.+ .|+.+..+||+|+..+|..+++.|+ ++ .+||||
T Consensus 488 ~~K~~~L~~ll~~-----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 488 DPRVEWLMGYLTS-----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp SHHHHHHHHHHHH-----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cHHHHHHHHHHHh-----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3456666666655 4678999999999999999999995 6999999999999999999999999 55 799999
Q ss_pred eCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHc
Q 045757 480 TDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544 (548)
Q Consensus 480 T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~ 544 (548)
|+++++|+|+|++++||++|+|+++..|.||+||+||.|+.|.|++++...+...-+.|.+.+..
T Consensus 563 T~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp SCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred cchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999976666544443444556665543
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.8e-34 Score=303.66 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=200.5
Q ss_pred cccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCC
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEP 196 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~ 196 (548)
..++|++++++||||||||+ ++++.+... ...+|++||++|+.|+++.+++..
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~-----------------~~gl~l~PtR~LA~Qi~~~l~~~g------ 203 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----------------KSGVYCGPLKLLAHEIFEKSNAAG------ 203 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----------------SSEEEEESSHHHHHHHHHHHHHTT------
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----------------CCeEEEeCHHHHHHHHHHHHHhcC------
Confidence 44678999999999999998 444444432 346999999999999999998863
Q ss_pred cEEEEEEeCCCCccCC----CCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhcc
Q 045757 197 LVRAVAVCGGQGWPIG----KPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFD 272 (548)
Q Consensus 197 ~~~~~~~~g~~~~~~~----~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~ 272 (548)
+.+..++|+...... ..+++++|++.+. ....+++||+||+|++++.+++..+..++..++
T Consensus 204 -~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~------------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~-- 268 (677)
T 3rc3_A 204 -VPCDLVTGEERVTVQPNGKQASHVSCTVEMCS------------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC-- 268 (677)
T ss_dssp -CCEEEECSSCEECCSTTCCCCSEEEEEGGGCC------------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC--
T ss_pred -CcEEEEECCeeEEecCCCcccceeEecHhHhh------------hcccCCEEEEecceecCCccchHHHHHHHHccC--
Confidence 678888888654322 3667777776542 246789999999999999999988888776653
Q ss_pred HHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccce
Q 045757 273 EKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQ 352 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 352 (548)
....+
T Consensus 269 ---------------------------------------------------------------------------~~~i~ 273 (677)
T 3rc3_A 269 ---------------------------------------------------------------------------AEEVH 273 (677)
T ss_dssp ---------------------------------------------------------------------------EEEEE
T ss_pred ---------------------------------------------------------------------------ccceE
Confidence 13578
Q ss_pred eEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeC
Q 045757 353 YIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFAN 432 (548)
Q Consensus 353 ~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~ 432 (548)
++++|||.+ ....+......... +. .+............ + ..+. ....+.+|||+
T Consensus 274 il~~SAT~~-----~i~~l~~~~~~~~~-v~-~~~r~~~l~~~~~~--------l----~~l~------~~~~g~iIf~~ 328 (677)
T 3rc3_A 274 LCGEPAAID-----LVMELMYTTGEEVE-VR-DYKRLTPISVLDHA--------L----ESLD------NLRPGDCIVCF 328 (677)
T ss_dssp EEECGGGHH-----HHHHHHHHHTCCEE-EE-ECCCSSCEEECSSC--------C----CSGG------GCCTTEEEECS
T ss_pred EEeccchHH-----HHHHHHHhcCCceE-EE-EeeecchHHHHHHH--------H----HHHH------hcCCCCEEEEc
Confidence 899999953 12222211111111 00 00000000000000 0 0000 11345689999
Q ss_pred ChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc---cCCcEEEEeCcccccCCCCCCCEEEEecC---------
Q 045757 433 TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ---EKGGVFVCTDAAARGIDIPNVSHVIQADF--------- 500 (548)
Q Consensus 433 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~---~~~~vLv~T~~~~~GiDip~v~~VI~~~~--------- 500 (548)
+++.++.+++.|.+.++.+..+||+|+.++|.++++.|+ ++.+|||||+++++|||+ ++++||+++.
T Consensus 329 s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G 407 (677)
T 3rc3_A 329 SKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKG 407 (677)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-------
T ss_pred CHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCC
Confidence 999999999999999999999999999999999999998 346999999999999999 8999999999
Q ss_pred -----CCCHHHHHHHhcccccCCCc---ceEEEEeecCchhHHHHHH
Q 045757 501 -----ATSAVDFLHRVGRTARAGQY---GLVTSLYTESNRDLVDTIR 539 (548)
Q Consensus 501 -----p~s~~~~~Qr~GR~gR~g~~---G~~i~~~~~~~~~~~~~i~ 539 (548)
|.|..+|+||+|||||.|.. |.|+.++. .+...++++.
T Consensus 408 ~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~~ 453 (677)
T 3rc3_A 408 ERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEIL 453 (677)
T ss_dssp ----CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHHH
T ss_pred ccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHHH
Confidence 78999999999999999965 66665544 4444444443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2e-33 Score=292.57 Aligned_cols=316 Identities=19% Similarity=0.204 Sum_probs=210.7
Q ss_pred CCcHHHHhhhhccc----CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.|+|+|.++++.+. .+++++++++||+|||++++. ++..+... ....++||||| ..|+.|
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~--------------~~~~~~LIv~P-~~l~~q 100 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE--------------NELTPSLVICP-LSVLKN 100 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT--------------TCCSSEEEEEC-STTHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc--------------CCCCCEEEEcc-HHHHHH
Confidence 69999999998763 578999999999999999654 44444332 13468999999 469999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCc-cCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHH
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGW-PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQN 260 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~ 260 (548)
|.++++++... .++..+.|+... ....++|+|+||+.+..... ....++++||+||||++.+...
T Consensus 101 w~~e~~~~~~~-----~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-- 166 (500)
T 1z63_A 101 WEEELSKFAPH-----LRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-- 166 (500)
T ss_dssp HHHHHHHHCTT-----SCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS--
T ss_pred HHHHHHHHCCC-----ceEEEEecCchhccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH--
Confidence 99999998743 456666665532 23568999999999965432 1134689999999999865432
Q ss_pred HHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCccccccccccCcccchhh
Q 045757 261 QVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDW 340 (548)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (548)
.....+..+
T Consensus 167 ~~~~~l~~l----------------------------------------------------------------------- 175 (500)
T 1z63_A 167 KIFKAVKEL----------------------------------------------------------------------- 175 (500)
T ss_dssp HHHHHHHTS-----------------------------------------------------------------------
T ss_pred HHHHHHHhh-----------------------------------------------------------------------
Confidence 222222222
Q ss_pred HHHHhhhcccceeEEEeeccCCCccchhhhhhh---------------------------------hcCCCC-ccc-ccc
Q 045757 341 RRVRKNYQRSKQYIFVAATLPINGKKTAGAVLK---------------------------------QMFPDA-DWI-SGN 385 (548)
Q Consensus 341 ~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~---------------------------------~~~~~~-~~~-~~~ 385 (548)
...+.+++|||+..+.-......+. ...... ... ..+
T Consensus 176 --------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 176 --------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp --------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred --------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 2345678888875432111111000 000000 000 000
Q ss_pred c-ccccCcccccceee---------------------------------------------------------ecchhhH
Q 045757 386 Y-LHFHNPRLKEKWIE---------------------------------------------------------VTVDTQV 407 (548)
Q Consensus 386 ~-~~~~~~~~~~~~~~---------------------------------------------------------~~~~~~~ 407 (548)
. .....+......+. .....|.
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~ 327 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKM 327 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHH
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhH
Confidence 0 00000000000000 1112344
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-c-CCc-EEEEeCcc
Q 045757 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-E-KGG-VFVCTDAA 483 (548)
Q Consensus 408 ~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-~-~~~-vLv~T~~~ 483 (548)
..+.+.+.+.. ..+.++||||+++..++.+++.|.+. ++.+..+||+++..+|.++++.|+ + +.+ +|+||+++
T Consensus 328 ~~l~~~l~~~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~ 404 (500)
T 1z63_A 328 IRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 404 (500)
T ss_dssp HHHHHHHHHHH---TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC
T ss_pred HHHHHHHHHHH---ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc
Confidence 44445554433 45789999999999999999999985 999999999999999999999999 4 344 89999999
Q ss_pred cccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceE--EEEeecCchh
Q 045757 484 ARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV--TSLYTESNRD 533 (548)
Q Consensus 484 ~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~--i~~~~~~~~~ 533 (548)
++|+|+|++++||++|+|+|+..|.||+||++|.|+.+.+ +.++.+...+
T Consensus 405 ~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 405 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp -CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred cCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 9999999999999999999999999999999999987665 5566666443
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.3e-31 Score=273.33 Aligned_cols=386 Identities=18% Similarity=0.166 Sum_probs=244.2
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|++.|.-..-.+.+|+ |..+.||+|||+++.+|++...+. +..+.|++||..||.
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------------G~~vhVvT~ndyLA~ 130 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----------------GKGVHLVTVNDYLAR 130 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------------SSCEEEEESSHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----------------CCceEEEeccHHHHH
Confidence 4576 79999988888887776 999999999999999999866543 567999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCC------------------------------------------------Ccc--
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQ------------------------------------------------GWP-- 210 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~------------------------------------------------~~~-- 210 (548)
|-.+++..+....| +.+.+++... +..
T Consensus 131 rdae~m~~l~~~Lg---lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 207 (822)
T 3jux_A 131 RDALWMGPVYLFLG---LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI 207 (822)
T ss_dssp HHHHHHHHHHHHTT---CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC
T ss_pred hHHHHHHHHHHHhC---CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH
Confidence 99999999999998 8888888721 000
Q ss_pred ----CCCCcEEEeChHHH-----HhhcChhhhhccccccCeeEEEEecchhhc-cC---------------ChHHHHHHH
Q 045757 211 ----IGKPDVIVSTPAAL-----LNNIDPKRRRRMEFVRGVKYVVFDEADMLL-CG---------------SFQNQVIRL 265 (548)
Q Consensus 211 ----~~~~~Ilv~Tp~~l-----~~~l~~~~~~~~~~~~~~~~vV~DEah~l~-~~---------------~~~~~~~~i 265 (548)
...+||.++|..-+ .+.+...... ...+.+.+.|+||+|.++ +. ..+..+..+
T Consensus 208 err~aY~~DItYgTn~EfgFDYLRDnm~~~~~~--~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~ 285 (822)
T 3jux_A 208 TRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYND--KVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQI 285 (822)
T ss_dssp CHHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTS--CCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHhcCCCEEccCcchhhHhHHhhccCCHHH--hccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHH
Confidence 12489999998765 3333222111 124578999999999774 11 122334444
Q ss_pred HhhhhccHHHHhhhcccCccccccc------------CCCCCCCCCchhh---hhh------------hhhhcccCCCCC
Q 045757 266 INMFRFDEKQLSRMNESGVEKPLEM------------DNSSLTQPDLQDE---ENL------------QDEYISDEGNFE 318 (548)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~ 318 (548)
...+..+.. +........+.+ ....+. +..+. ..+ ...|+-..+...
T Consensus 286 v~~l~~~~d----y~vdek~~~v~lTe~G~~~~E~~l~i~nly--~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~ 359 (822)
T 3jux_A 286 AKKFVKDKD----FTVDEKARTIILTEEGVAKAEKIIGVENLY--DPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVI 359 (822)
T ss_dssp TTSSCBTTT----EEECCSSSCEEECHHHHHHHHHHHTCSCTT--SGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEE
T ss_pred HHhcCcCCc----EEEEcccCeEEECHHHHHHHHHHhCCcccc--chhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEE
Confidence 444432100 000000000000 000000 11100 000 001111111100
Q ss_pred --------C---CCC----------ccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCC
Q 045757 319 --------G---DSD----------VEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFP 377 (548)
Q Consensus 319 --------~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~ 377 (548)
. ..+ +++++...++.....-.++.+...| .++.+||+|...... .+.+-+..
T Consensus 360 iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y---~kL~GMTGTa~te~~----Ef~~iY~l 432 (822)
T 3jux_A 360 IVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMY---EKLAGMTGTAKTEES----EFVQVYGM 432 (822)
T ss_dssp ECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTS---SEEEEEESSCGGGHH----HHHHHSCC
T ss_pred EEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHh---hHHeEECCCCchHHH----HHHHHhCC
Confidence 0 000 1111112222222233445555554 469999999964322 22222222
Q ss_pred CCcccccccccccCcccc-cceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecC
Q 045757 378 DADWISGNYLHFHNPRLK-EKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHK 456 (548)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~ 456 (548)
....+... ....... ...+......|...+.+.+.... ..+.++||||+|+..++.+++.|.+.|+.+..+||
T Consensus 433 ~vv~IPtn---kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~---~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhg 506 (822)
T 3jux_A 433 EVVVIPTH---KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRY---KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNA 506 (822)
T ss_dssp CEEECCCS---SCCCCEECCCEEESSHHHHHHHHHHHHHHHH---HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECS
T ss_pred eEEEECCC---CCcceeecCcEEEecHHHHHHHHHHHHHHHh---hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeC
Confidence 22222111 1111122 23455667778888888877642 24689999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCCcEEEEeCcccccCCCC--------CCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEee
Q 045757 457 DLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIP--------NVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYT 528 (548)
Q Consensus 457 ~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~ 528 (548)
+....++..+...++ ...|+|||++++||+||+ +..+||+++.|.|...|.||+||+||+|.+|.+++|++
T Consensus 507 kq~~rE~~ii~~ag~-~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvs 585 (822)
T 3jux_A 507 KYHEKEAEIVAKAGQ-KGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLS 585 (822)
T ss_dssp CHHHHHHHHHHHHHS-TTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEE
T ss_pred CchHHHHHHHHhCCC-CCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEec
Confidence 955555544444444 347999999999999998 66799999999999999999999999999999999999
Q ss_pred cCc
Q 045757 529 ESN 531 (548)
Q Consensus 529 ~~~ 531 (548)
..|
T Consensus 586 leD 588 (822)
T 3jux_A 586 LED 588 (822)
T ss_dssp TTS
T ss_pred hhH
Confidence 987
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=9.8e-33 Score=258.60 Aligned_cols=176 Identities=26% Similarity=0.388 Sum_probs=150.8
Q ss_pred eecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCC
Q 045757 79 FADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNS 158 (548)
Q Consensus 79 ~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~ 158 (548)
.+....+|+++++++.+.+++.++||..|+++|.++++.+++|+|++++||||+|||++|++|++..+....
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~-------- 95 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-------- 95 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC--------
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc--------
Confidence 345667899999999999999999999999999999999999999999999999999999999999886431
Q ss_pred CCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhh
Q 045757 159 DKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKR 232 (548)
Q Consensus 159 ~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~ 232 (548)
......++++||++||++|+.|+.+.++++....+ +++..++|+.... ..+++|+|+||+++.+++....
T Consensus 96 -~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 96 -FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR---LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp -CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS
T ss_pred -ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC---ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 01122467899999999999999999999988776 7888888887644 3468999999999998885432
Q ss_pred hhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 233 ~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
..+.++++||+||||++++++|...+..++..++
T Consensus 172 ----~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~ 205 (242)
T 3fe2_A 172 ----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 205 (242)
T ss_dssp ----CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC
T ss_pred ----CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC
Confidence 3478899999999999999999999999887664
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-31 Score=286.83 Aligned_cols=317 Identities=16% Similarity=0.197 Sum_probs=216.0
Q ss_pred CCcHHHHhhhhccc----CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGPVL----SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~----~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.++|+|.+++..+. .++++|++++||+|||++++..+...+... ...+.+||||| ..|+.|
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--------------~~~~~~LIV~P-~sll~q 300 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--------------RQNGPHIIVVP-LSTMPA 300 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------SCCSCEEEECC-TTTHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------CCCCCEEEEEC-chHHHH
Confidence 79999999998665 789999999999999999766655544333 13567999999 688999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCc------------------cCCCCcEEEeChHHHHhhcChhhhhccccccCee
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGW------------------PIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVK 243 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~ 243 (548)
+.+++.++... +.+..+.|+... ....++|+|+||+.+...... ..-..++
T Consensus 301 W~~E~~~~~p~-----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~------l~~~~w~ 369 (800)
T 3mwy_W 301 WLDTFEKWAPD-----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE------LGSIKWQ 369 (800)
T ss_dssp HHHHHHHHSTT-----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH------HHTSEEE
T ss_pred HHHHHHHHCCC-----ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH------HhcCCcc
Confidence 99999998743 667777776431 234689999999999654321 1122578
Q ss_pred EEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCc
Q 045757 244 YVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDEENLQDEYISDEGNFEGDSDV 323 (548)
Q Consensus 244 ~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (548)
+||+||||++-+.. ......+..++
T Consensus 370 ~vIvDEaH~lkn~~--s~~~~~l~~l~----------------------------------------------------- 394 (800)
T 3mwy_W 370 FMAVDEAHRLKNAE--SSLYESLNSFK----------------------------------------------------- 394 (800)
T ss_dssp EEEETTGGGGCCSS--SHHHHHHTTSE-----------------------------------------------------
T ss_pred eeehhhhhhhcCch--hHHHHHHHHhh-----------------------------------------------------
Confidence 99999999984432 23333333321
Q ss_pred cccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCccchhhhhhhhcCCCCcc----------------------
Q 045757 324 EGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGKKTAGAVLKQMFPDADW---------------------- 381 (548)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~---------------------- 381 (548)
....+++|||+-.+.-.-...++.-..+....
T Consensus 395 --------------------------~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~ 448 (800)
T 3mwy_W 395 --------------------------VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLH 448 (800)
T ss_dssp --------------------------EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHH
T ss_pred --------------------------hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHH
Confidence 24456677776433221111111100000000
Q ss_pred ---------cccccccccCcccccceee----------------------------------------------------
Q 045757 382 ---------ISGNYLHFHNPRLKEKWIE---------------------------------------------------- 400 (548)
Q Consensus 382 ---------~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 400 (548)
..........+......+.
T Consensus 449 ~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 449 RRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDN 528 (800)
T ss_dssp HTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSS
T ss_pred HHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcc
Confidence 0000000000000000000
Q ss_pred -----------------------ecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCC
Q 045757 401 -----------------------VTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKD 457 (548)
Q Consensus 401 -----------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~ 457 (548)
+....|...+.+.+... ...+.++||||+....+..+.+.|...|+.+..+||+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~---~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~ 605 (800)
T 3mwy_W 529 AEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRL---KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGT 605 (800)
T ss_dssp HHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHH---TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTT
T ss_pred hHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHH---hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 01122344444444443 2457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhc-cCC---cEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcc--eEEEEeecCc
Q 045757 458 LSLEERAKTLVNFQ-EKG---GVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYG--LVTSLYTESN 531 (548)
Q Consensus 458 ~~~~~r~~~~~~f~-~~~---~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G--~~i~~~~~~~ 531 (548)
++..+|.++++.|+ ++. .+|++|.++++|||++.+++||++|+|+|+..+.||+||++|.|+.. .++.|+++..
T Consensus 606 ~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 606 VPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999998 333 59999999999999999999999999999999999999999999864 4566777764
Q ss_pred h
Q 045757 532 R 532 (548)
Q Consensus 532 ~ 532 (548)
.
T Consensus 686 i 686 (800)
T 3mwy_W 686 V 686 (800)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.98 E-value=4.4e-32 Score=252.08 Aligned_cols=174 Identities=24% Similarity=0.365 Sum_probs=142.9
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCC
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSEN 155 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~ 155 (548)
....+....+|+++++++.+.+.++++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------ 89 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------ 89 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------
Confidence 34445566789999999999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhccc-CCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcC
Q 045757 156 SNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADN-GEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNID 229 (548)
Q Consensus 156 ~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~ 229 (548)
..+.++||++||++|+.|+.+.++++.... + +++..+.|+.... ..+++|+|+||+++.+.+.
T Consensus 90 --------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~ 158 (230)
T 2oxc_A 90 --------NLSTQILILAPTREIAVQIHSVITAIGIKMEG---LECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 158 (230)
T ss_dssp --------SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT---CCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHH
T ss_pred --------CCCceEEEEeCCHHHHHHHHHHHHHHhcccCC---ceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHh
Confidence 235799999999999999999999987553 3 7788888886543 3578999999999988875
Q ss_pred hhhhhccccccCeeEEEEecchhhccCC-hHHHHHHHHhhhh
Q 045757 230 PKRRRRMEFVRGVKYVVFDEADMLLCGS-FQNQVIRLINMFR 270 (548)
Q Consensus 230 ~~~~~~~~~~~~~~~vV~DEah~l~~~~-~~~~~~~i~~~l~ 270 (548)
... ..+.++++||+||||++++++ |...+..++..++
T Consensus 159 ~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 196 (230)
T 2oxc_A 159 LDY----LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP 196 (230)
T ss_dssp TTS----SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC
T ss_pred cCC----cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC
Confidence 432 336789999999999999887 8888888876653
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.98 E-value=1.1e-31 Score=258.55 Aligned_cols=170 Identities=21% Similarity=0.364 Sum_probs=143.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCC--CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSG--KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSD 159 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g--~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~ 159 (548)
...+|+++++++.+++++..+||..|+++|.++++.++.| +|++++||||||||++|++|+++.+...
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------- 159 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------- 159 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc----------
Confidence 3467999999999999999999999999999999999987 9999999999999999999999887332
Q ss_pred CCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc---CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 160 KEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP---IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 160 ~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
..++++|||+||++|+.|+.+.++.+..... .+.+....|+.... ..+++|+|+||++|.+++.... .
T Consensus 160 ----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~---~ 230 (300)
T 3fmo_B 160 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK---F 230 (300)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC---C
T ss_pred ----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCC--CcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC---C
Confidence 2456899999999999999999999876532 26777777776544 4568999999999999986432 2
Q ss_pred ccccCeeEEEEecchhhcc-CChHHHHHHHHhhhh
Q 045757 237 EFVRGVKYVVFDEADMLLC-GSFQNQVIRLINMFR 270 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~-~~~~~~~~~i~~~l~ 270 (548)
..+.++++||+||||++++ .+|...+..++..++
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 3477899999999999987 688888888876653
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.8e-30 Score=274.56 Aligned_cols=109 Identities=14% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCC---cEEEEeCcccccCCCCCCCEEEEe
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKG---GVFVCTDAAARGIDIPNVSHVIQA 498 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~---~vLv~T~~~~~GiDip~v~~VI~~ 498 (548)
.+.++||||+.+..++.+.+.|...++.+..+||+++..+|.++++.|+ ++. .+|++|+++++|+|++++++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 4689999999999999999999999999999999999999999999999 433 489999999999999999999999
Q ss_pred cCCCCHHHHHHHhcccccCCCcce--EEEEeecCc
Q 045757 499 DFATSAVDFLHRVGRTARAGQYGL--VTSLYTESN 531 (548)
Q Consensus 499 ~~p~s~~~~~Qr~GR~gR~g~~G~--~i~~~~~~~ 531 (548)
|+|+|+..+.|++||++|.|+... ++.|+....
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999999999999999998754 556677764
No 61
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=7.6e-32 Score=253.02 Aligned_cols=170 Identities=32% Similarity=0.561 Sum_probs=147.5
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
+...+|+++++++.+.++++.+||..|+++|.++++.+++|++++++||||+|||++|++|+++.+...
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~----------- 108 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET----------- 108 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----------
Confidence 345679999999999999999999999999999999999999999999999999999999999988664
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
..+.++||++||++|+.|+.+.++++....+ +++..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 109 ---~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-- 180 (249)
T 3ber_A 109 ---PQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-- 180 (249)
T ss_dssp ---CCSSCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--
T ss_pred ---CCCceEEEEeCCHHHHHHHHHHHHHHhccCC---eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--
Confidence 2356899999999999999999999987766 7788888886543 3679999999999988875422
Q ss_pred ccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 235 ~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
...+.++++||+||||++++++|...+..++..++
T Consensus 181 -~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~ 215 (249)
T 3ber_A 181 -GFNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215 (249)
T ss_dssp -TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC
T ss_pred -CcCccccCEEEEcChhhhhccChHHHHHHHHHhCC
Confidence 12377899999999999999999999988886653
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=5.7e-32 Score=251.25 Aligned_cols=180 Identities=25% Similarity=0.378 Sum_probs=144.6
Q ss_pred CCceeecCCCcccc-cCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCC
Q 045757 75 SDTFFADDNVTWKS-LGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDS 153 (548)
Q Consensus 75 ~~~~~~~~~~~~~~-l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~ 153 (548)
.....++...+|++ +++++.+++++.++||..|+++|.++++.+++|+|++++||||+|||++|++|++..+.....
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~-- 87 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI-- 87 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc--
Confidence 35556677788999 799999999999999999999999999999999999999999999999999999988743210
Q ss_pred CCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhh
Q 045757 154 ENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNN 227 (548)
Q Consensus 154 ~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~ 227 (548)
......+.++||++||++|+.|+.+.++.+.. .+ +++..+.|+.... ..+++|+|+||+++.++
T Consensus 88 ------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~ 157 (228)
T 3iuy_A 88 ------SREQRNGPGMLVLTPTRELALHVEAECSKYSY-KG---LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDL 157 (228)
T ss_dssp -----------CCCSEEEECSSHHHHHHHHHHHHHHCC-TT---CCEEEECC------CHHHHHSCCSEEEECHHHHHHH
T ss_pred ------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cC---ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHH
Confidence 01122467899999999999999999999862 23 6788888876544 35689999999999887
Q ss_pred cChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 228 IDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 228 l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
+... ...+.++++||+||||++++++|...+..++..++
T Consensus 158 ~~~~----~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 196 (228)
T 3iuy_A 158 QMNN----SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR 196 (228)
T ss_dssp HHTT----CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHcC----CcCcccceEEEEECHHHHhccchHHHHHHHHHhCC
Confidence 6443 23478899999999999999999999988887654
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=2.2e-31 Score=243.28 Aligned_cols=167 Identities=28% Similarity=0.453 Sum_probs=142.8
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|+++++++.+++.+.++||..|+++|.++++.+++|+++++++|||+|||++|++|++..+...
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------------- 68 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-------------- 68 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--------------
Confidence 469999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhccc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRME 237 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 237 (548)
..+.++||++|+++|+.|+.+.++++....+ .+.+..+.|+.... ..+++|+|+||+++.+.+... ..
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~ 142 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMG--GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG----VA 142 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSS--SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT----CS
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC----Cc
Confidence 2357899999999999999999999886541 26788888887643 457899999999998877543 23
Q ss_pred cccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 238 FVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 238 ~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
.+.++++||+||||++.+.++...+..++..++
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 175 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC
Confidence 477899999999999999899888888876653
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=1.3e-31 Score=247.00 Aligned_cols=169 Identities=22% Similarity=0.370 Sum_probs=142.3
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPT 163 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~ 163 (548)
.+|+++++++.+.++++++||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+...
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-------------- 69 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-------------- 69 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--------------
Confidence 569999999999999999999999999999999999999999999999999999999999886322
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCC-cEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcc
Q 045757 164 PPRAPSLVLCPNVVLCEQVVRMANALSADNGEP-LVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRM 236 (548)
Q Consensus 164 ~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 236 (548)
..+.++||++||++|+.|+.+.++++....+.. .+.+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 70 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---- 145 (219)
T 1q0u_A 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---- 145 (219)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC----
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC----
Confidence 235789999999999999999999987654210 26777788875432 3478999999999988775432
Q ss_pred ccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 237 EFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 237 ~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
..+.++++||+||||++.++++...+..++..++
T Consensus 146 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 146 LDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179 (219)
T ss_dssp CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC
Confidence 3367899999999999999999888888876653
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=1.1e-31 Score=250.60 Aligned_cols=171 Identities=25% Similarity=0.464 Sum_probs=140.8
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
..++...+|+++++++.+.+++.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-------- 95 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-------- 95 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------
Confidence 344566789999999999999999999999999999999999999999999999999999999999886321
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcCh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
..+.++||++||++|+.|+.+.++++....+ +.+..+.|+.... .+.++|+|+||+++.+.+..
T Consensus 96 ------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~ 166 (237)
T 3bor_A 96 ------FKETQALVLAPTRELAQQIQKVILALGDYMG---ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 166 (237)
T ss_dssp ------SCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECC-------------CCCSEEEECHHHHHHHHHT
T ss_pred ------CCCceEEEEECcHHHHHHHHHHHHHHhhhcC---ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 2357899999999999999999999987665 6777777776543 23489999999999888754
Q ss_pred hhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l 269 (548)
.. ..+.++++||+||||++++++|...+..++..+
T Consensus 167 ~~----~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 201 (237)
T 3bor_A 167 RY----LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL 201 (237)
T ss_dssp TS----SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHS
T ss_pred CC----cCcccCcEEEECCchHhhccCcHHHHHHHHHhC
Confidence 32 336789999999999999999998888887655
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.3e-31 Score=248.51 Aligned_cols=174 Identities=26% Similarity=0.418 Sum_probs=146.0
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
....+|+++++++.+.+.+.++||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+....
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~---------- 91 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ---------- 91 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc----------
Confidence 3456799999999999999999999999999999999999999999999999999999999999887531
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
.....+.++||++||++|+.|+.+.++.+....+ +.+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~--- 165 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD---FSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV--- 165 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS---CCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS---
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---eeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC---
Confidence 1112467899999999999999999999987665 7788888886543 3578999999999988775431
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
...+.++++||+||||++.+++|...+..++..++
T Consensus 166 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 200 (236)
T 2pl3_A 166 SFHATDLQMLVLDEADRILDMGFADTMNAVIENLP 200 (236)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC
T ss_pred CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC
Confidence 23367899999999999999999988888876653
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=252.92 Aligned_cols=172 Identities=26% Similarity=0.421 Sum_probs=142.4
Q ss_pred CCcccccC--CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCC
Q 045757 83 NVTWKSLG--LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDK 160 (548)
Q Consensus 83 ~~~~~~l~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~ 160 (548)
..+|++++ +++.++++++++||..|+++|.++++.++.|+|++++||||+|||++|++|+++.+....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 34677887 999999999999999999999999999999999999999999999999999999887631
Q ss_pred CCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhh
Q 045757 161 EPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 161 ~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
.....+.++||++||++|+.|+.+.++++....+ ..+..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 121 ~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-- 195 (262)
T 3ly5_A 121 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV---HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-- 195 (262)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC---SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--
Confidence 1112367899999999999999999999987766 6777788876543 2468999999999988775432
Q ss_pred ccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 235 RMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 235 ~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
...+.++++||+||||++++++|...+..++..++
T Consensus 196 -~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~ 230 (262)
T 3ly5_A 196 -GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 230 (262)
T ss_dssp -TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC
T ss_pred -CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC
Confidence 12367899999999999999999999998887664
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=5.9e-31 Score=243.80 Aligned_cols=172 Identities=24% Similarity=0.484 Sum_probs=143.4
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
.++....+|+++++++.+.+.+.++||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+...
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------- 79 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------- 79 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--------
Confidence 344556789999999999999999999999999999999999999999999999999999999999887322
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-----CCCCcEEEeChHHHHhhcChhh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-----IGKPDVIVSTPAALLNNIDPKR 232 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~Ilv~Tp~~l~~~l~~~~ 232 (548)
..+.++||++|+++|+.|+.+.++++....+ +++..+.|+.... ...++|+|+||+++.+.+...
T Consensus 80 ------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~- 149 (224)
T 1qde_A 80 ------VKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR- 149 (224)
T ss_dssp ------CCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEECC----------CTTCSEEEECHHHHHHHHHTT-
T ss_pred ------CCCceEEEEECCHHHHHHHHHHHHHHhcccC---ceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC-
Confidence 2467999999999999999999999987665 7778888876543 235899999999998877543
Q ss_pred hhccccccCeeEEEEecchhhccCChHHHHHHHHhhhh
Q 045757 233 RRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFR 270 (548)
Q Consensus 233 ~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~ 270 (548)
...+.++++||+||||++.++++...+..++..++
T Consensus 150 ---~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~ 184 (224)
T 1qde_A 150 ---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 184 (224)
T ss_dssp ---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC
T ss_pred ---CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC
Confidence 23467899999999999999999988888876553
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.3e-30 Score=285.52 Aligned_cols=327 Identities=15% Similarity=0.125 Sum_probs=209.8
Q ss_pred CHHHHHHHHHCC-------CCCCcHHHHhhhhcccC--------------CCcEEEEccCCCchhHHhHHHHHHHHHHHc
Q 045757 92 SDRLIRALENSG-------FGRPSIVQAASVGPVLS--------------GKDVVIAAETGSGKTHSYLVPLIEKLCTAL 150 (548)
Q Consensus 92 ~~~l~~~l~~~~-------~~~~~~~Q~~~i~~i~~--------------g~~~ii~a~TGsGKTl~~~l~il~~~~~~~ 150 (548)
++.++..+...- ...|+|+|.+|++.+++ +++++++++||||||+++ ++++..+...
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~- 327 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL- 327 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-
Confidence 345555555531 23599999999998875 368999999999999997 6666544211
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc-------cCCCCcEEEeChHH
Q 045757 151 GDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW-------PIGKPDVIVSTPAA 223 (548)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~Ilv~Tp~~ 223 (548)
....++|||+|+++|+.|+.+.+..+.... +.++... ...+++|+|+||++
T Consensus 328 -------------~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~---------v~~~~s~~~l~~~L~~~~~~IiVtTiqk 385 (1038)
T 2w00_A 328 -------------DFIDKVFFVVDRKDLDYQTMKEYQRFSPDS---------VNGSENTAGLKRNLDKDDNKIIVTTIQK 385 (1038)
T ss_dssp -------------TTCCEEEEEECGGGCCHHHHHHHHTTSTTC---------SSSSCCCHHHHHHHHCSSCCEEEEEHHH
T ss_pred -------------CCCceEEEEeCcHHHHHHHHHHHHHhcccc---------cccccCHHHHHHHhcCCCCCEEEEEHHH
Confidence 123589999999999999999998876421 1122211 13568999999999
Q ss_pred HHhhcChhhhhccccccCeeEEEEecchhhccCChHHHHHHHHhhhhccHHHHhhhcccCcccccccCCCCCCCCCchhh
Q 045757 224 LLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKQLSRMNESGVEKPLEMDNSSLTQPDLQDE 303 (548)
Q Consensus 224 l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (548)
+...+..... ...+....+||+||||++.. +.....+...+
T Consensus 386 l~~~l~~~~~--~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~---------------------------------- 426 (1038)
T 2w00_A 386 LNNLMKAESD--LPVYNQQVVFIFDECHRSQF---GEAQKNLKKKF---------------------------------- 426 (1038)
T ss_dssp HHHHHHHCCC--CGGGGSCEEEEEESCCTTHH---HHHHHHHHHHC----------------------------------
T ss_pred HHHHHhcccc--hhccccccEEEEEccchhcc---hHHHHHHHHhC----------------------------------
Confidence 9887643211 11245789999999998642 22233333322
Q ss_pred hhhhhhhcccCCCCCCCCCccccccccccCcccchhhHHHHhhhcccceeEEEeeccCCCcc----chhhhhhhhcCCCC
Q 045757 304 ENLQDEYISDEGNFEGDSDVEGLTEETKSGSIKKKDWRRVRKNYQRSKQYIFVAATLPINGK----KTAGAVLKQMFPDA 379 (548)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~----~~~~~~l~~~~~~~ 379 (548)
+..+++++|||+..... .....++..+....
T Consensus 427 ---------------------------------------------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y 461 (1038)
T 2w00_A 427 ---------------------------------------------KRYYQFGFTGTPIFPENALGSETTASVFGRELHSY 461 (1038)
T ss_dssp ---------------------------------------------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEE
T ss_pred ---------------------------------------------CcccEEEEeCCccccccchhhhHHHHHhCCeeEee
Confidence 34789999999875432 11222221110000
Q ss_pred c---cccccccc-----cc--Ccc---------------cccceeeecchhhHHHHHHHHHHHhhcc-------CCCCcE
Q 045757 380 D---WISGNYLH-----FH--NPR---------------LKEKWIEVTVDTQVDALIEAVKERLEFG-------AETSRT 427 (548)
Q Consensus 380 ~---~~~~~~~~-----~~--~~~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~ 427 (548)
. .+..+... .. .+. +... ..+..+.++..+.+.+..+.... ..+.++
T Consensus 462 ~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~ka 540 (1038)
T 2w00_A 462 VITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNA 540 (1038)
T ss_dssp CHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEE
T ss_pred cHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 0 00000000 00 000 0000 00112333444444443332111 135689
Q ss_pred EEEeCChhHHHHHHHHHHHcC------------Cce-EEecCC----------C----------CH--------------
Q 045757 428 MVFANTVDAVYAVTKILKTAG------------IEC-YCYHKD----------L----------SL-------------- 460 (548)
Q Consensus 428 lVF~~s~~~~~~l~~~L~~~~------------~~~-~~~~~~----------~----------~~-------------- 460 (548)
||||+++..|..+++.|.+.+ ..+ ..+|++ + +.
T Consensus 541 mVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn 620 (1038)
T 2w00_A 541 MLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYN 620 (1038)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999999999999998764 444 455542 2 22
Q ss_pred ---------------HHHHHHHHhhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCc----
Q 045757 461 ---------------EERAKTLVNFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQY---- 520 (548)
Q Consensus 461 ---------------~~r~~~~~~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~---- 520 (548)
.+|..++++|+ ++.+|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+..
T Consensus 621 ~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~ 699 (1038)
T 2w00_A 621 SHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTF 699 (1038)
T ss_dssp HHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCS
T ss_pred HHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCc
Confidence 14788999999 677999999999999999999 778899999999999999999998764
Q ss_pred ceEEEEee
Q 045757 521 GLVTSLYT 528 (548)
Q Consensus 521 G~~i~~~~ 528 (548)
|.++.|+.
T Consensus 700 G~IVdf~~ 707 (1038)
T 2w00_A 700 GNIVTFRD 707 (1038)
T ss_dssp EEEEESSC
T ss_pred EEEEEccc
Confidence 77776665
No 70
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=6.2e-31 Score=248.25 Aligned_cols=176 Identities=25% Similarity=0.400 Sum_probs=146.9
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCC
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKE 161 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~ 161 (548)
...+|+++++++.+.+++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...... ....
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~-----~~~~ 95 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-----QQRY 95 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccc-----cccc
Confidence 45679999999999999999999999999999999999999999999999999999999999988653100 0001
Q ss_pred CCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 162 PTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 162 ~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
....+.++||++||++|+.|+.+.++.+....+ +++..+.|+.... ..+++|+|+||+++.+.+....
T Consensus 96 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--- 169 (253)
T 1wrb_A 96 SKTAYPKCLILAPTRELAIQILSESQKFSLNTP---LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--- 169 (253)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS---
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHHHhccCC---ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC---
Confidence 122457999999999999999999999987665 7788888887654 3578999999999998875432
Q ss_pred cccccCeeEEEEecchhhccCChHHHHHHHHhhh
Q 045757 236 MEFVRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l 269 (548)
..+.++++||+||||++++++|...+..++..+
T Consensus 170 -~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 202 (253)
T 1wrb_A 170 -ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202 (253)
T ss_dssp -BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSS
T ss_pred -CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhc
Confidence 347789999999999999999999999888754
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.5e-30 Score=240.40 Aligned_cols=172 Identities=24% Similarity=0.383 Sum_probs=138.3
Q ss_pred eeecCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCC
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSN 157 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~ 157 (548)
..+....+|+++++++.+.+++.++||..|+++|.++++.+++|+++++++|||+|||++|++|++..+...
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------- 79 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------- 79 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------
T ss_pred cccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------
Confidence 344455679999999999999999999999999999999999999999999999999999999999876221
Q ss_pred CCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc-------CCCCcEEEeChHHHHhhcCh
Q 045757 158 SDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP-------IGKPDVIVSTPAALLNNIDP 230 (548)
Q Consensus 158 ~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~Ilv~Tp~~l~~~l~~ 230 (548)
..+.++||++|+++|+.|+.+.++++..... .+++..+.|+.... ...++|+|+||+++.+.+..
T Consensus 80 ------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~ 151 (220)
T 1t6n_A 80 ------TGQVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN 151 (220)
T ss_dssp ------TTCCCEEEECSCHHHHHHHHHHHHHHTTTST--TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT
T ss_pred ------CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCC--CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh
Confidence 2346899999999999999999999876541 27888888886533 34679999999999887754
Q ss_pred hhhhccccccCeeEEEEecchhhccC-ChHHHHHHHHhhh
Q 045757 231 KRRRRMEFVRGVKYVVFDEADMLLCG-SFQNQVIRLINMF 269 (548)
Q Consensus 231 ~~~~~~~~~~~~~~vV~DEah~l~~~-~~~~~~~~i~~~l 269 (548)
.. ..+.+++++|+||||+++++ ++...+..++..+
T Consensus 152 ~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~ 187 (220)
T 1t6n_A 152 KS----LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT 187 (220)
T ss_dssp TS----SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS
T ss_pred CC----CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC
Confidence 32 34778999999999999864 6666666666543
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=6.8e-31 Score=240.29 Aligned_cols=165 Identities=31% Similarity=0.502 Sum_probs=140.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTP 164 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~ 164 (548)
+|+++++++.+.+.++++|+..|+++|.++++.+++|+++++++|||+|||++|++|+++.+... ....
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-----------~~~~ 70 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS-----------QERG 70 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----------CCTT
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc-----------cccC
Confidence 59999999999999999999999999999999999999999999999999999999999887421 1122
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc------CCCCcEEEeChHHHHhhcChhhhhcccc
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP------IGKPDVIVSTPAALLNNIDPKRRRRMEF 238 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 238 (548)
.+.++||++|+++|+.|+.+.++++... +++..++|+.... ..+++|+|+||+++.+.+... ...
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~ 141 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPH-----LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG----VLD 141 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTT-----SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT----SSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhc-----ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC----Ccc
Confidence 4678999999999999999999998754 5677788876543 246899999999998887543 234
Q ss_pred ccCeeEEEEecchhhccCChHHHHHHHHhhh
Q 045757 239 VRGVKYVVFDEADMLLCGSFQNQVIRLINMF 269 (548)
Q Consensus 239 ~~~~~~vV~DEah~l~~~~~~~~~~~i~~~l 269 (548)
+.++++||+||||++.+.++...+..++..+
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 172 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSAT 172 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTS
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhC
Confidence 7789999999999999999998888887655
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=243.81 Aligned_cols=173 Identities=25% Similarity=0.419 Sum_probs=140.1
Q ss_pred eecCCCccccc----CCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCC
Q 045757 79 FADDNVTWKSL----GLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSE 154 (548)
Q Consensus 79 ~~~~~~~~~~l----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~ 154 (548)
.+++..+|+++ ++++.+++++.++||..|+++|.++++.+++|++++++||||+|||++|++|++..+..
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 93 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ------ 93 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS------
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh------
Confidence 34455678877 89999999999999999999999999999999999999999999999999999988732
Q ss_pred CCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCC-------CccCCCCcEEEeChHHHHhh
Q 045757 155 NSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ-------GWPIGKPDVIVSTPAALLNN 227 (548)
Q Consensus 155 ~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~Ilv~Tp~~l~~~ 227 (548)
....+.++||++||++|+.|+.+.++++....+ +++..+.|+. .....+++|+|+||+++.++
T Consensus 94 -------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 163 (245)
T 3dkp_A 94 -------PANKGFRALIISPTRELASQIHRELIKISEGTG---FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYL 163 (245)
T ss_dssp -------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHH
T ss_pred -------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHH
Confidence 122467899999999999999999999987766 6666666542 22356789999999999888
Q ss_pred cChhhhhccccccCeeEEEEecchhhcc---CChHHHHHHHHhhh
Q 045757 228 IDPKRRRRMEFVRGVKYVVFDEADMLLC---GSFQNQVIRLINMF 269 (548)
Q Consensus 228 l~~~~~~~~~~~~~~~~vV~DEah~l~~---~~~~~~~~~i~~~l 269 (548)
+..... ...+.++++||+||||++++ .+|...+..++..+
T Consensus 164 l~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~ 206 (245)
T 3dkp_A 164 LKQDPP--GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 206 (245)
T ss_dssp HHSSSC--SCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHC
T ss_pred HHhCCC--CcccccCcEEEEeChHHhcccccccHHHHHHHHHHhc
Confidence 754321 23477899999999999987 46767776665443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.2e-27 Score=253.79 Aligned_cols=135 Identities=26% Similarity=0.343 Sum_probs=119.5
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
..+...++..+.... ..+.++||||+++..++.+++.|.+.++.+..+||+++..+|.++++.|+ ++.+|||||++
T Consensus 422 ~~~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERA---ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHH---HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh
Confidence 345666666665543 34679999999999999999999999999999999999999999999999 67799999999
Q ss_pred ccccCCCCCCCEEEEecC-----CCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHH
Q 045757 483 AARGIDIPNVSHVIQADF-----ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAA 542 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~ 542 (548)
+++|+|+|++++||+++. |.|..+|+||+||+||.| .|.+++|+++.+....+.|++..
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999997 899999999999999995 89999999998877776666543
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=9.3e-28 Score=209.76 Aligned_cols=151 Identities=27% Similarity=0.412 Sum_probs=140.9
Q ss_pred cccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 392 PRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
..+.+.++.+..+.|...+.+.+... .++++||||+++..++.+++.|.+.++.+..+||+|+..+|..+++.|+
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~~-----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMTE-----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHH-----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccceEEEEECChHHHHHHHHHHHHhc-----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 45777888888888999888888763 5679999999999999999999999999999999999999999999999
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
++.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+++.+...++.+++.++.+++
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999887764
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.6e-26 Score=240.29 Aligned_cols=131 Identities=20% Similarity=0.174 Sum_probs=109.3
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
.+|+ .|+++|..+++.+++|+ +.+|.||+|||++|.+|++...+. +..++|++||++|+.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------------G~qv~VvTPTreLA~ 134 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----------------GKGVHVVTVNDYLAR 134 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----------------CSCCEEEESSHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----------------CCCEEEEeCCHHHHH
Confidence 4699 99999999999999998 999999999999999999755432 457999999999999
Q ss_pred HHHHHHHHhhcccCCCcEEEEEEeCCCCcc----CCCCcEEEeChHHH-HhhcChhhh--hcccccc---CeeEEEEecc
Q 045757 181 QVVRMANALSADNGEPLVRAVAVCGGQGWP----IGKPDVIVSTPAAL-LNNIDPKRR--RRMEFVR---GVKYVVFDEA 250 (548)
Q Consensus 181 q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~Ilv~Tp~~l-~~~l~~~~~--~~~~~~~---~~~~vV~DEa 250 (548)
|..+++..+....| +++.+++|+.+.. ..+++|+|+||+.+ .+++...-. .....++ ++.++|+||+
T Consensus 135 Qdae~m~~l~~~lG---Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 135 RDAEWMGPVYRGLG---LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp HHHHHHHHHHHTTT---CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTH
T ss_pred HHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEech
Confidence 99999999999888 8999999987633 34699999999999 677754321 0112356 7999999999
Q ss_pred hhhc
Q 045757 251 DMLL 254 (548)
Q Consensus 251 h~l~ 254 (548)
|.++
T Consensus 212 DsmL 215 (997)
T 2ipc_A 212 DSIL 215 (997)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9886
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=4.5e-26 Score=241.74 Aligned_cols=134 Identities=26% Similarity=0.369 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc
Q 045757 404 DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA 482 (548)
Q Consensus 404 ~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~ 482 (548)
..+...++..+.... ..+.++||||+++..++.+++.|.+.|+.+..+||+++..+|.++++.|+ ++.+|||||++
T Consensus 428 ~~~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARI---ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHH---TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 345566666665543 35679999999999999999999999999999999999999999999999 77899999999
Q ss_pred ccccCCCCCCCEEEEecC-----CCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHH
Q 045757 483 AARGIDIPNVSHVIQADF-----ATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRA 541 (548)
Q Consensus 483 ~~~GiDip~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~ 541 (548)
+++|+|+|++++||+++. |.|..+|+||+||+||. ..|.|++|+++.+....+.|++.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 999999999999999997 99999999999999998 78999999999887766666544
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=7.4e-27 Score=204.57 Aligned_cols=149 Identities=23% Similarity=0.410 Sum_probs=131.1
Q ss_pred ccccceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 393 RLKEKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 393 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
.+.+.++.+..+. |...+.+.+.. ..++++||||+++..++.+++.|.+.++.+..+||+|+..+|.++++.|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 77 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 77 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHH-----TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4566777777666 88888887776 35689999999999999999999999999999999999999999999999
Q ss_pred -cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 472 -EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 472 -~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
++.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|++|+++.+...++.+++.++..+
T Consensus 78 ~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (165)
T 1fuk_A 78 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 153 (165)
T ss_dssp TTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCC
T ss_pred cCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCc
Confidence 677999999999999999999999999999999999999999999999999999999999999999998877554
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=6.2e-27 Score=206.14 Aligned_cols=149 Identities=19% Similarity=0.403 Sum_probs=136.4
Q ss_pred ccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-
Q 045757 393 RLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ- 471 (548)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~- 471 (548)
.+.+.++.+..+.|...+.+.+.. ..++++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHH-----SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEECChHHHHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 466778888888899888888876 35679999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHHcCC
Q 045757 472 EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 472 ~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~~~~ 546 (548)
++.+|||||+++++|+|+|++++||++|+|+|+..|+||+||+||.|+.|.+++|+++. +...++.|++.++..+
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 67799999999999999999999999999999999999999999999999999999875 6788899998876554
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=206.04 Aligned_cols=150 Identities=22% Similarity=0.344 Sum_probs=132.1
Q ss_pred cccccceeeecchh-hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhh
Q 045757 392 PRLKEKWIEVTVDT-QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 392 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
..+.+.++.+.... |...+.+.+.. ..++++||||+++..++.+++.|.+.++.+..+||+|+..+|..+++.|
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGS-----ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTT-----SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 45677777777655 77777776654 3567999999999999999999999999999999999999999999999
Q ss_pred c-cCCcEEEEeCcccccCCCCCCCEEEEecCC------CCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHH
Q 045757 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFA------TSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAK 543 (548)
Q Consensus 471 ~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~ 543 (548)
+ ++.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++|+++.+...++.+++.++
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 9 677999999999999999999999999999 999999999999999999999999999999999999999887
Q ss_pred cCC
Q 045757 544 LGQ 546 (548)
Q Consensus 544 ~~~ 546 (548)
..+
T Consensus 161 ~~~ 163 (175)
T 2rb4_A 161 SSI 163 (175)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=206.21 Aligned_cols=150 Identities=30% Similarity=0.500 Sum_probs=124.5
Q ss_pred CcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhh
Q 045757 391 NPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNF 470 (548)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 470 (548)
...+.+.++.+....|...+.+.+... ..++++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNAT----GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC-----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhc----CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 345777888888888998888888763 3578999999999999999999999999999999999999999999999
Q ss_pred c-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHc
Q 045757 471 Q-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKL 544 (548)
Q Consensus 471 ~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~ 544 (548)
+ ++.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.|++|+++.+...++.+++.++.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9 7779999999999999999999999999999999999999999999999999999999999999999988853
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=206.21 Aligned_cols=149 Identities=25% Similarity=0.441 Sum_probs=130.7
Q ss_pred ccCcccccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 045757 389 FHNPRLKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLV 468 (548)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 468 (548)
.....+.+.+..+....|...+.+.+.. .++++||||+++..++.+++.|...++.+..+||+|+..+|.++++
T Consensus 25 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~------~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 98 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEAKMVYLLECLQK------TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 98 (191)
T ss_dssp ---CCSEEEEEECCGGGHHHHHHHHHTT------SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCcCceEEEEEcChHHHHHHHHHHHHh------CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 3345677778888888888888877654 3568999999999999999999999999999999999999999999
Q ss_pred hhc-cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecC-chhHHHHHHHHHH
Q 045757 469 NFQ-EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTES-NRDLVDTIRRAAK 543 (548)
Q Consensus 469 ~f~-~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~-~~~~~~~i~~~~~ 543 (548)
.|+ ++.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+++. +...++.|++.++
T Consensus 99 ~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~ 175 (191)
T 2p6n_A 99 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLL 175 (191)
T ss_dssp HHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHH
Confidence 999 77799999999999999999999999999999999999999999999999999999986 7788888888764
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.5e-26 Score=209.45 Aligned_cols=147 Identities=33% Similarity=0.451 Sum_probs=132.9
Q ss_pred ccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cC
Q 045757 395 KEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EK 473 (548)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~ 473 (548)
.+..+.+....|...+.+.+.. ..++++||||+++..++.+++.|.+.++.+..+||+|+..+|..+++.|+ ++
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~ 81 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE 81 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS
T ss_pred eeeEEeCCHHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3445566777888888888875 35789999999999999999999999999999999999999999999999 67
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 474 GGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 474 ~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.++..+
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 7999999999999999999999999999999999999999999999999999999999999999998876543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.8e-25 Score=213.03 Aligned_cols=148 Identities=31% Similarity=0.435 Sum_probs=132.3
Q ss_pred cccceeeecchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c
Q 045757 394 LKEKWIEVTVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E 472 (548)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~ 472 (548)
+.+.++.+....|...+.+.+... .++++||||+++..++.+++.|.+.++.+..+||+|++.+|..+++.|+ +
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~-----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g 77 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA-----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG 77 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH-----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc-----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC
Confidence 456677778888899888888763 4789999999999999999999999999999999999999999999999 7
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCC
Q 045757 473 KGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQ 546 (548)
Q Consensus 473 ~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~ 546 (548)
+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.++..+
T Consensus 78 ~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 78 EVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp SCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred CceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999877543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=5.6e-27 Score=206.33 Aligned_cols=149 Identities=30% Similarity=0.483 Sum_probs=133.0
Q ss_pred cccceeeecc-hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-
Q 045757 394 LKEKWIEVTV-DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ- 471 (548)
Q Consensus 394 ~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~- 471 (548)
+.+.+..+.. +.|...+.+.+.. ..++++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 78 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQ-----PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE 78 (170)
Confidence 4455555555 6677777666654 35679999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcCCC
Q 045757 472 EKGGVFVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLGQP 547 (548)
Q Consensus 472 ~~~~vLv~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~~p 547 (548)
++.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.+++++++.+...++.+++.++..++
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 154 (170)
Confidence 6779999999999999999999999999999999999999999999999999999999999999999988776553
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=4.4e-24 Score=222.25 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEE--EeCcccc
Q 045757 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFV--CTDAAAR 485 (548)
Q Consensus 408 ~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv--~T~~~~~ 485 (548)
..+.+.+.+.+. ..++++|||++|...++.+++.+.. .. ...++.. .+|.++++.|+.+..||+ ||..+++
T Consensus 370 ~~~~~~l~~~~~--~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYE--NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKYLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHH--TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCCEEEEEC------
T ss_pred HHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCeEEEEEecCceec
Confidence 444444444432 3467999999999999999988865 33 3445553 468889999996557877 8899999
Q ss_pred cCCCCC----CCEEEEecCCCC----H--------------------------HHHHHHhcccccCCCcceEEEEeecC
Q 045757 486 GIDIPN----VSHVIQADFATS----A--------------------------VDFLHRVGRTARAGQYGLVTSLYTES 530 (548)
Q Consensus 486 GiDip~----v~~VI~~~~p~s----~--------------------------~~~~Qr~GR~gR~g~~G~~i~~~~~~ 530 (548)
|||+|+ +++||++++|.. + ..+.|.+||+-|..++--++++++++
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 999997 899999998832 1 23579999999985543345455554
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=2.8e-21 Score=202.01 Aligned_cols=382 Identities=14% Similarity=0.065 Sum_probs=207.9
Q ss_pred CCcHHHHhhhhc----ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHH
Q 045757 106 RPSIVQAASVGP----VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQ 181 (548)
Q Consensus 106 ~~~~~Q~~~i~~----i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q 181 (548)
.++|+|.+++.. +..|++++++||||+|||++|++|++. . +.+++|++||++|+.|
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~----------------~~~v~i~~pt~~l~~q 62 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----V----------------KPKVLFVVRTHNEFYP 62 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----H----------------CSEEEEEESSGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----C----------------CCeEEEEcCCHHHHHH
Confidence 699999998764 457899999999999999999999997 2 5789999999999999
Q ss_pred HHHHHHHhhcccCCCcEEEEEEeCCCCcc---------------------------------------------------
Q 045757 182 VVRMANALSADNGEPLVRAVAVCGGQGWP--------------------------------------------------- 210 (548)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------------------------------------- 210 (548)
+.+++..+....+ +++..+.|.....
T Consensus 63 ~~~~~~~l~~~~~---~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy 139 (551)
T 3crv_A 63 IYRDLTKIREKRN---ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPY 139 (551)
T ss_dssp HHHHHTTCCCSSC---CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhhhcC---ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCcc
Confidence 9999988866554 6777776642210
Q ss_pred ------CCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH--------HHHHHHHhhhhccH--H
Q 045757 211 ------IGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ--------NQVIRLINMFRFDE--K 274 (548)
Q Consensus 211 ------~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~--------~~~~~i~~~l~~~~--~ 274 (548)
...++|||+||..|.+...... .....+..++||||||++.+ -.. ..+..+++.+.... .
T Consensus 140 ~~ar~~~~~adIVV~~~~~l~~~~~~~~---~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~ 215 (551)
T 3crv_A 140 YSLLNSLYKADVIALTYPYFFIDRYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRR 215 (551)
T ss_dssp HHHHHHGGGCSEEEEETHHHHCHHHHTT---SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhhhcCCEEEeCchHhcCHHHHHh---cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHH
Confidence 1357999999999987753222 11224678999999999987 321 23444444432211 0
Q ss_pred HHhh----hcccCcccccccCCCCCCCCC-chhhhhhhhh-------hcccCCCC---------------CCCCCccccc
Q 045757 275 QLSR----MNESGVEKPLEMDNSSLTQPD-LQDEENLQDE-------YISDEGNF---------------EGDSDVEGLT 327 (548)
Q Consensus 275 ~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~---------------~~~~~~~~~~ 327 (548)
.+.. +...... ............. ......+... ........ ..+.......
T Consensus 216 ~l~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 294 (551)
T 3crv_A 216 ILSKLLNQLREVVLP-DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYS 294 (551)
T ss_dssp HHHHHHHHHTTSCCS-CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEET
T ss_pred HHHHHHHHHHHHhhc-cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccC
Confidence 0100 1110000 0000000000000 0000000000 00000000 0000000000
Q ss_pred cccccCcccchhhHHHHhhhccc-ceeEEEeeccCCCccchhhhhhhhcCCCCcccccccccccCcccccceeee----c
Q 045757 328 EETKSGSIKKKDWRRVRKNYQRS-KQYIFVAATLPINGKKTAGAVLKQMFPDADWISGNYLHFHNPRLKEKWIEV----T 402 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~-~q~v~~SAT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 402 (548)
+......... -..+. .+... ..+|++|||+.+ .......+.-.. ..... ........+-..+..+.+ +
T Consensus 295 ~~l~~~pl~~--~~~l~-~~~~~~~svIltSaTL~~--~~~~~~~lGl~~-~~~~~-~~~~~~~spf~~~~~l~v~~~~~ 367 (551)
T 3crv_A 295 KRLVIKNPEI--SYYLN-LLNDNELSIILMSGTLPP--REYMEKVWGIKR-NMLYL-DVEREIQKRVSGSYECYIGVDVT 367 (551)
T ss_dssp TEEEEECCCT--HHHHG-GGGCTTCEEEEEESSCCC--HHHHHHTSCCCS-CEEEE-EHHHHTTSCCSCEEEEEEECSCC
T ss_pred CEEEEEECCH--HHHHH-HHhccCceEEEEeeCCCc--HHHHHHHhCCCC-ccccc-cceeecCCcCCCceEEEEeCCCC
Confidence 0000011111 11222 44555 889999999975 111111111100 00000 000000000001111111 0
Q ss_pred --c----hhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCc
Q 045757 403 --V----DTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGG 475 (548)
Q Consensus 403 --~----~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~ 475 (548)
. +.....+.+.+.+... ..++++|||++|....+.+++ ..+..+..-..+++. .+.++.|+ ++..
T Consensus 368 ~~~~~r~~~~~~~l~~~i~~l~~--~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~ 439 (551)
T 3crv_A 368 SKYDMRSDNMWKRYADYLLKIYF--QAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKV 439 (551)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHH--HCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSC
T ss_pred CccccCCHHHHHHHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCe
Confidence 0 1123455555555432 346799999999999999997 244555554445553 45677885 5558
Q ss_pred EEEEe--CcccccCCCC-----CCCEEEEecCCC---------------------CH---------HHHHHHhcccccCC
Q 045757 476 VFVCT--DAAARGIDIP-----NVSHVIQADFAT---------------------SA---------VDFLHRVGRTARAG 518 (548)
Q Consensus 476 vLv~T--~~~~~GiDip-----~v~~VI~~~~p~---------------------s~---------~~~~Qr~GR~gR~g 518 (548)
||+|| ..+++|||+| .++.||..+.|. .. ..+.|.+||+-|..
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~ 519 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDV 519 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCST
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCC
Confidence 99998 6999999999 488999988763 11 12468999999986
Q ss_pred CcceEEEEeecC
Q 045757 519 QYGLVTSLYTES 530 (548)
Q Consensus 519 ~~G~~i~~~~~~ 530 (548)
++--++++++++
T Consensus 520 ~D~G~v~llD~R 531 (551)
T 3crv_A 520 NDKCNVWLLDKR 531 (551)
T ss_dssp TCEEEEEEESGG
T ss_pred CccEEEEEeehh
Confidence 654455566654
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=183.37 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=104.8
Q ss_pred HCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 101 NSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
......|+++|.++++.+++++++++.+|||+|||++|+++++..+.... ....+.++||++|+++|+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~~~~~lil~p~~~L~~ 96 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK-----------KASEPGKVIVLVNKVLLVE 96 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH-----------HTTCCCCEEEEESSHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc-----------cccCCCcEEEEECHHHHHH
Confidence 33455899999999999999999999999999999999999988776541 0113578999999999999
Q ss_pred H-HHHHHHHhhcccCCCcEEEEEEeCCCCccC------CCCcEEEeChHHHHhhcChhhhhc--cccccCeeEEEEecch
Q 045757 181 Q-VVRMANALSADNGEPLVRAVAVCGGQGWPI------GKPDVIVSTPAALLNNIDPKRRRR--MEFVRGVKYVVFDEAD 251 (548)
Q Consensus 181 q-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~Ilv~Tp~~l~~~l~~~~~~~--~~~~~~~~~vV~DEah 251 (548)
| +.+.+..+... + +++..+.|+..... .+++|+|+||+.+...+....... ...+.++++||+||||
T Consensus 97 q~~~~~~~~~~~~-~---~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 97 QLFRKEFQPFLKK-W---YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 172 (216)
T ss_dssp HHHHHTHHHHHTT-T---SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-
T ss_pred HHHHHHHHHHhcc-C---ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch
Confidence 9 77788887654 2 67777777765442 358999999999988775432111 1336789999999999
Q ss_pred hhccCChHHHH
Q 045757 252 MLLCGSFQNQV 262 (548)
Q Consensus 252 ~l~~~~~~~~~ 262 (548)
++.+.++...+
T Consensus 173 ~~~~~~~~~~~ 183 (216)
T 3b6e_A 173 HTNKEAVYNNI 183 (216)
T ss_dssp ------CHHHH
T ss_pred hhccCCcHHHH
Confidence 99876555544
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=3e-21 Score=184.72 Aligned_cols=134 Identities=15% Similarity=0.134 Sum_probs=104.9
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.|+++|.++++.++.+++.++++|||+|||+++++++...+... ..++||++|+++|+.|+.+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------------~~~~lil~Pt~~L~~q~~~~ 176 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------------EGKILIIVPTTALTTQMADD 176 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----------------SSEEEEECSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----------------CCeEEEEECCHHHHHHHHHH
Confidence 79999999999999888999999999999999988777655432 45899999999999999999
Q ss_pred HHHhhcccCCCcEEEEEEeCCCCccC---CCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChHHHH
Q 045757 186 ANALSADNGEPLVRAVAVCGGQGWPI---GKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQNQV 262 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~~~~ 262 (548)
+.++....+ ..+..+.++..... .+.+|+|+||+.+..... ..+.++++||+||||++.+ ..+
T Consensus 177 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~----~~~ 242 (282)
T 1rif_A 177 FVDYRLFSH---AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG----KSI 242 (282)
T ss_dssp HHHHTSCCG---GGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH----HHH
T ss_pred HHHhccccc---ceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc----ccH
Confidence 998865433 56777777765432 678999999998855421 2367889999999999853 244
Q ss_pred HHHHhhh
Q 045757 263 IRLINMF 269 (548)
Q Consensus 263 ~~i~~~l 269 (548)
..++..+
T Consensus 243 ~~il~~~ 249 (282)
T 1rif_A 243 SSIISGL 249 (282)
T ss_dssp HHHTTTC
T ss_pred HHHHHHh
Confidence 4444433
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=6.8e-20 Score=192.70 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC--cccc
Q 045757 408 DALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD--AAAR 485 (548)
Q Consensus 408 ~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~--~~~~ 485 (548)
..+.+.+.+.+. ..+++++||++|....+.+++.++. .... ...+++..++..+++.|+++..||+++. .+++
T Consensus 434 ~~~~~~i~~l~~--~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~gsf~E 508 (620)
T 4a15_A 434 DRMATVIEDIIL--KVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSE 508 (620)
T ss_dssp HHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHTTSCCEEEEETTSCC--
T ss_pred HHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhccCCcEEEEEecCceec
Confidence 344444444432 2367899999999999999988862 2222 4555666789999999996669999984 9999
Q ss_pred cCCCCC--CCEEEEecCCCC-----------------------------HHHHHHHhcccccCCCcceEEEEeec
Q 045757 486 GIDIPN--VSHVIQADFATS-----------------------------AVDFLHRVGRTARAGQYGLVTSLYTE 529 (548)
Q Consensus 486 GiDip~--v~~VI~~~~p~s-----------------------------~~~~~Qr~GR~gR~g~~G~~i~~~~~ 529 (548)
|||+|+ ++.||..+.|.- +..+.|.+||+-|.-.+--+++++++
T Consensus 509 GiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 509 GINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp ------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 999986 889999988732 11247999999997665334445554
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=181.30 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEE
Q 045757 91 LSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSL 170 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~L 170 (548)
.++.+...+...+...++++|.++++.+..|++++++||||||||+++.+++++...... ...+..++
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------~~~~~~~l 113 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------RAAECNIV 113 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------CGGGCEEE
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------CCCceEEE
Confidence 344444444444444689999999999999999999999999999999999888776530 01245899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCC-ccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEec
Q 045757 171 VLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG-WPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDE 249 (548)
Q Consensus 171 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DE 249 (548)
+++|+++|+.|+.+.+.......-. ..+..-..... ....+++|+|+||+++.+.+.. .+.++++||+||
T Consensus 114 ~~~p~~~la~q~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-------~l~~~~~lVlDE 184 (235)
T 3llm_A 114 VTQPRRISAVSVAERVAFERGEEPG--KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA-------GIRGISHVIVDE 184 (235)
T ss_dssp EEESSHHHHHHHHHHHHHTTTCCTT--SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH-------CCTTCCEEEECC
T ss_pred EeccchHHHHHHHHHHHHHhccccC--ceEEEeechhhccCCCCCeEEEECHHHHHHHHHh-------hhcCCcEEEEEC
Confidence 9999999999998887665432211 12222112111 1235689999999999988743 278899999999
Q ss_pred chhh-ccCChH
Q 045757 250 ADML-LCGSFQ 259 (548)
Q Consensus 250 ah~l-~~~~~~ 259 (548)
||.+ ++.++.
T Consensus 185 ah~~~~~~~~~ 195 (235)
T 3llm_A 185 IHERDINTDFL 195 (235)
T ss_dssp TTSCCHHHHHH
T ss_pred CccCCcchHHH
Confidence 9974 444444
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=9.6e-19 Score=162.03 Aligned_cols=118 Identities=25% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..|+++|.+++..+++++++++++|||+|||++++.++... +.++||++|+++|+.|+.+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------~~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------------CSCEEEEESSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEeCCHHHHHHHHH
Confidence 37999999999999999999999999999999987766532 4689999999999999999
Q ss_pred HHHHhhcccCCCcEE-EEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhhccCChH
Q 045757 185 MANALSADNGEPLVR-AVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADMLLCGSFQ 259 (548)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~~~~~ 259 (548)
.+.++ + +. +..+.|+.. ...+|+|+||+.+...... ...++++||+||+|++.+..+.
T Consensus 152 ~~~~~----~---~~~v~~~~g~~~---~~~~i~v~T~~~l~~~~~~-------~~~~~~llIiDEaH~l~~~~~~ 210 (237)
T 2fz4_A 152 RLGIF----G---EEYVGEFSGRIK---ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYV 210 (237)
T ss_dssp HHGGG----C---GGGEEEESSSCB---CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEECSSCCCTTTHH
T ss_pred HHHhC----C---CCeEEEEeCCCC---CcCCEEEEeHHHHHhhHHH-------hcccCCEEEEECCccCCChHHH
Confidence 88874 2 45 666666653 3678999999998765421 1345899999999998765543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.7e-18 Score=163.07 Aligned_cols=128 Identities=21% Similarity=0.234 Sum_probs=99.2
Q ss_pred cchhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc-CCceEEecCCCCHHHHHHHHHhhc-c-CCc-EE
Q 045757 402 TVDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA-GIECYCYHKDLSLEERAKTLVNFQ-E-KGG-VF 477 (548)
Q Consensus 402 ~~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~-~-~~~-vL 477 (548)
....|+..+.+.+.... ..+.++||||++...++.+.+.|.+. |+.+..+||+++..+|.++++.|+ + +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~---~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHH---HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHH---hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 34567888888777754 25789999999999999999999885 999999999999999999999999 4 455 79
Q ss_pred EEeCcccccCCCCCCCEEEEecCCCCHHHHHHHhcccccCCCcceE--EEEeecCch
Q 045757 478 VCTDAAARGIDIPNVSHVIQADFATSAVDFLHRVGRTARAGQYGLV--TSLYTESNR 532 (548)
Q Consensus 478 v~T~~~~~GiDip~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~G~~--i~~~~~~~~ 532 (548)
++|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.| +.|+.....
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999999999999999999999999999998764 667777643
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.70 E-value=2.7e-08 Score=104.59 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=56.3
Q ss_pred cHHHHhhhhcccCCCcEEEEccCCCchh--HHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 108 SIVQAASVGPVLSGKDVVIAAETGSGKT--HSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 108 ~~~Q~~~i~~i~~g~~~ii~a~TGsGKT--l~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.++|+.+++.++.++.+++.|++||||| ++++++.+..+.. ..+.++++++||..++.++.+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------------~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------------GERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------------SCCCCEEEEBSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------------cCCCeEEEEeCChhHHHHHHHH
Confidence 7899999999999999999999999999 4455555554311 1356899999999999999888
Q ss_pred HHHhhccc
Q 045757 186 ANALSADN 193 (548)
Q Consensus 186 ~~~~~~~~ 193 (548)
+.......
T Consensus 216 ~~~~~~~l 223 (608)
T 1w36_D 216 LGKALRQL 223 (608)
T ss_dssp HTHHHHHS
T ss_pred HHHHHhcC
Confidence 77665443
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=0.0001 Score=74.72 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=50.9
Q ss_pred HCCCCCCcHHHHhhhhcccC----C-CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 101 NSGFGRPSIVQAASVGPVLS----G-KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 101 ~~~~~~~~~~Q~~~i~~i~~----g-~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
-+.|..+++-|++++..++. + ..++|.|+.|||||.+. ..++..+... ....+++++||
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------------~~~~il~~a~T 83 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------------GETGIILAAPT 83 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------------TCCCEEEEESS
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------------CCceEEEecCc
Confidence 45677899999999987653 2 38999999999999763 4455555443 12479999999
Q ss_pred HHHHHHHHHHH
Q 045757 176 VVLCEQVVRMA 186 (548)
Q Consensus 176 ~~L~~q~~~~~ 186 (548)
...+..+.+.+
T Consensus 84 ~~Aa~~l~~~~ 94 (459)
T 3upu_A 84 HAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 88877765543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.10 E-value=9.1e-06 Score=85.80 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 104 FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 104 ~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
+..+.+.|.+|+..++.+.-.+|.||+|||||.+. ..++..+... .+.++|+++||...+.++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~---------------~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------------GNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS---------------SSCCEEEEESSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc---------------CCCeEEEEeCcHHHHHHHH
Confidence 34678999999999888788899999999999874 3444444321 3578999999999999998
Q ss_pred HHHHHh
Q 045757 184 RMANAL 189 (548)
Q Consensus 184 ~~~~~~ 189 (548)
+.+.+.
T Consensus 242 ~~l~~~ 247 (624)
T 2gk6_A 242 EKIHQT 247 (624)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 877654
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=1e-05 Score=84.05 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++.|++++..++.++.+++.|+.|||||.+ +..++..+... +.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~----------------g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL----------------GLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT----------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc----------------CCeEEEecCcHHHHHHhHhh
Confidence 58999999999999999999999999999976 33344444332 67899999999888877653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.5e-05 Score=83.24 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=55.7
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+.+.|.+|+..++.+.-.+|.||.|||||.+.. .++..+... ++.++|+++||...+.++.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~---------------~~~~ILv~a~tn~A~d~l~~ 422 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI---------------HKDRILVCAPSNVAVDHLAA 422 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH---------------HCCCEEEEESSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC---------------CCCeEEEEcCcHHHHHHHHH
Confidence 45789999999999887788999999999998743 344444432 25789999999999999998
Q ss_pred HHHHh
Q 045757 185 MANAL 189 (548)
Q Consensus 185 ~~~~~ 189 (548)
.+.+.
T Consensus 423 rL~~~ 427 (802)
T 2xzl_A 423 KLRDL 427 (802)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88765
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.99 E-value=1.2e-05 Score=85.29 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCcHHHHhhhhcccCCC-cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGK-DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~-~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
.+.+-|.+|+..++..+ =.+|+||.|||||.+.. -++..+... +.++|+++||..-+.++.+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~----------------~~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ----------------GLKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT----------------TCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC----------------CCeEEEEcCchHHHHHHHH
Confidence 46789999999888665 46899999999998844 444444443 5789999999999999988
Q ss_pred HHHHh
Q 045757 185 MANAL 189 (548)
Q Consensus 185 ~~~~~ 189 (548)
.+...
T Consensus 252 rL~~~ 256 (646)
T 4b3f_X 252 RLALC 256 (646)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.97 E-value=0.001 Score=70.82 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+++-|.+++... ++.++|.|+.|||||.+..--+...+... ..+..++|++++|+..+.++.+
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-------------~~~~~~iL~ltft~~aa~e~~~ 72 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVE-------------NCSPYSIMAVTFTNKAAAEMRH 72 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTS-------------CCCGGGEEEEESSHHHHHHHHH
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhC-------------CCChhhEEEEeccHHHHHHHHH
Confidence 46899999999843 67899999999999988555554444221 0123589999999999999999
Q ss_pred HHHHhhc
Q 045757 185 MANALSA 191 (548)
Q Consensus 185 ~~~~~~~ 191 (548)
.+.++..
T Consensus 73 rl~~~~~ 79 (647)
T 3lfu_A 73 RIGQLMG 79 (647)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9888754
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.92 E-value=2.2e-05 Score=84.63 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=55.0
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+.+.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++|+++||..-+.++.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~---------------~~~~ilv~a~tn~A~~~l~~ 418 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------------GNGPVLVCAPSNIAVDQLTE 418 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT---------------CSSCEEEEESSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc---------------CCCcEEEEcCcHHHHHHHHH
Confidence 3578999999999888888899999999999874 3445554431 35789999999999999888
Q ss_pred HHHHh
Q 045757 185 MANAL 189 (548)
Q Consensus 185 ~~~~~ 189 (548)
.+.+.
T Consensus 419 ~l~~~ 423 (800)
T 2wjy_A 419 KIHQT 423 (800)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.81 E-value=0.00015 Score=68.26 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=88.8
Q ss_pred chhhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc
Q 045757 403 VDTQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA 482 (548)
Q Consensus 403 ~~~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~ 482 (548)
...|+..+-+.+.... ..+.+++||++..+..+-+.+++...++....+.|.....++. . -.....+.+.|..
T Consensus 107 ~SGKf~~L~~LL~~l~---~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~---~~~~~~i~Lltsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQ---EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A---NDFSCTVHLFSSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHT---TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-----------CCSEEEEEEESS
T ss_pred cCccHHHHHHHHHHHH---hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c---ccCCceEEEEECC
Confidence 4556666666555543 4678999999999999999999999999999999996543321 1 1233455555777
Q ss_pred ccccCC-----CCCCCEEEEecCCCCHHH-HHHHhcccccCC----CcceEEEEeecCchhH
Q 045757 483 AARGID-----IPNVSHVIQADFATSAVD-FLHRVGRTARAG----QYGLVTSLYTESNRDL 534 (548)
Q Consensus 483 ~~~GiD-----ip~v~~VI~~~~p~s~~~-~~Qr~GR~gR~g----~~G~~i~~~~~~~~~~ 534 (548)
.+-|+| ...++.||.||..+++.. .+|.+-|+.|.| +.-.++.+++....+.
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 777786 678999999999999887 599888888873 3456888888875543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.08 E-value=0.0024 Score=62.25 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=56.3
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.++|+|...+..+...+-+++..+-+.|||......++..+... ++..+++++|+..-+..+.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------------~g~~v~~vA~t~~qA~~vf~~ 227 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------------KDKAVGILAHKGSMSAEVLDR 227 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------------SSCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------------CCCeEEEEeCCHHHHHHHHHH
Confidence 68999999998765446689999999999988666555444322 356899999999999988888
Q ss_pred HHHhhcc
Q 045757 186 ANALSAD 192 (548)
Q Consensus 186 ~~~~~~~ 192 (548)
+..+...
T Consensus 228 i~~mi~~ 234 (385)
T 2o0j_A 228 TKQAIEL 234 (385)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.66 E-value=0.0077 Score=52.39 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
|+-.++.|++|+|||... +-++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~l-l~~~~~~~~~----------------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTEL-LSFVEIYKLG----------------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHH-HHHHHHHHHT----------------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHH-HHHHHHHHHC----------------CCeEEEEeecc
Confidence 556789999999999764 3444444433 56788888873
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.64 E-value=0.0063 Score=63.62 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=57.8
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.++|+|...+..+-..+..++..+-|+|||......++..+... ++..++++.|+...+..+.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------------~~~~i~~va~t~~qA~~~~~~ 227 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------------KDKAVGILAHKGSMSAEVLDR 227 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------------SSCEEEEEESSHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHH
Confidence 58999999998764456789999999999988765555544432 356899999999999999988
Q ss_pred HHHhhccc
Q 045757 186 ANALSADN 193 (548)
Q Consensus 186 ~~~~~~~~ 193 (548)
++.+....
T Consensus 228 i~~~i~~~ 235 (592)
T 3cpe_A 228 TKQAIELL 235 (592)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhC
Confidence 88877654
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.62 E-value=0.0038 Score=54.55 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
|+=.++.+++|+|||.. ++-++.++... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~----------------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIA----------------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHT----------------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------------CCEEEEEEecc
Confidence 45578899999999976 45556665543 67899999873
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0094 Score=52.61 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
|+=.++.+++|+|||.. ++-.+.++... +.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~----------------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA----------------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------------CCEEEEEEeccC
Confidence 44456899999999976 45555555544 689999999753
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.58 E-value=0.0063 Score=52.74 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999763
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.45 E-value=0.0042 Score=61.39 Aligned_cols=85 Identities=28% Similarity=0.292 Sum_probs=53.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+-.++.|+.|+|||... .+.+ . ....+|++||++++.++.+.+.+...
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~-~-----------------~~~~lVlTpT~~aa~~l~~kl~~~~~---------- 209 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRV-N-----------------FEEDLILVPGRQAAEMIRRRANASGI---------- 209 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHC-C-----------------TTTCEEEESCHHHHHHHHHHHTTTSC----------
T ss_pred cEEEEEcCCCCCHHHHH----HHHh-c-----------------cCCeEEEeCCHHHHHHHHHHhhhcCc----------
Confidence 45679999999999752 2221 1 13579999999999888876643210
Q ss_pred EEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 202 AVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 202 ~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
......-|.|.++++..-.. ......++||+||+-++
T Consensus 210 ---------~~~~~~~V~T~dsfL~~~~~------~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 210 ---------IVATKDNVRTVDSFLMNYGK------GARCQFKRLFIDEGLML 246 (446)
T ss_dssp ---------CCCCTTTEEEHHHHHHTTTS------SCCCCCSEEEEETGGGS
T ss_pred ---------cccccceEEEeHHhhcCCCC------CCCCcCCEEEEeCcccC
Confidence 00112347788876432211 00124789999999865
No 110
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.45 E-value=0.0052 Score=65.54 Aligned_cols=83 Identities=12% Similarity=-0.021 Sum_probs=60.4
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++-|.+++... ++.++|.|+.|||||.+..--+...+.+.. .+...+|+|+.|+..+.++.+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------------~~~~~IL~lTfT~~Aa~em~~R 66 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------------YQARHIAAVTFTNKAAREMKER 66 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------------CCGGGEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------------CCHHHeEEEeccHHHHHHHHHH
Confidence 4789999999864 678999999999999986555555554420 1245899999999999999998
Q ss_pred HHHhhcccCCCcEEEEEE
Q 045757 186 ANALSADNGEPLVRAVAV 203 (548)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (548)
+.+.....+...+.+.++
T Consensus 67 l~~~l~~~~~~~~~v~Tf 84 (673)
T 1uaa_A 67 VGQTLGRKEARGLMISTF 84 (673)
T ss_dssp HHHHSCTTTTTTSEEEEH
T ss_pred HHHHcCcccccCCEEEeH
Confidence 887764332222455543
No 111
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.42 E-value=0.0061 Score=53.68 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
|.=.++.+++|+|||.. ++..+.++... +.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~~----------------g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIYA----------------KQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT----------------TCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHHc----------------CCceEEEEecc
Confidence 44568899999999965 45555555543 67899999964
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.11 E-value=0.0095 Score=49.77 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999965
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.018 Score=51.53 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
|.-.++.|++|+|||.. ++-++.++... +.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~----------------g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYA----------------DVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------------TCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhc----------------CCEEEEEEecc
Confidence 45578889999999976 44455555443 67899998764
No 114
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.94 E-value=0.043 Score=51.37 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=32.2
Q ss_pred CCCcccccCCCHHHHHHHHHCC---CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSG---FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+..+|+++.-.+...+.+...- ...+..++. ..+..++++++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEK---VGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHH---HCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHh---cCCCCCCeEEEECCCCCcHHHHH
Confidence 3456889877776666665421 001111111 11234578999999999999653
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.61 E-value=0.027 Score=60.48 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=55.5
Q ss_pred CCCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHH
Q 045757 105 GRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVR 184 (548)
Q Consensus 105 ~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~ 184 (548)
..+++-|.+++... ++.++|.|+.|||||.+..--+...+.+. ..+...+|+|+.|+..+.++.+
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-------------~~~p~~IL~vTFTnkAA~Em~~ 74 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------------HVAPWNILAITFTNKAAREMRE 74 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTT-------------CCCGGGEEEEESSHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhc-------------CCCHHHeEEEeccHHHHHHHHH
Confidence 46899999999863 57899999999999988655555544321 0123579999999999999998
Q ss_pred HHHHhhc
Q 045757 185 MANALSA 191 (548)
Q Consensus 185 ~~~~~~~ 191 (548)
.+.++..
T Consensus 75 Rl~~~l~ 81 (724)
T 1pjr_A 75 RVQSLLG 81 (724)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 8887753
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.51 E-value=0.02 Score=65.28 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCcHHHHhhhhcccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRM 185 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~ 185 (548)
.+++-|.++|..- +++++|.|+.|||||.+.+--++..+... .......++|++++|+..+.++.+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~-----------~~~~~~~~il~~Tft~~aa~e~~~r 76 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAE-----------ENPIDVDRLLVVTFTNASAAEMKHR 76 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCS-----------SSCCCGGGEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcC-----------CCCCCccceEEEeccHHHHHHHHHH
Confidence 6899999999875 88999999999999988655566555321 0011345899999999999999888
Q ss_pred HHHhh
Q 045757 186 ANALS 190 (548)
Q Consensus 186 ~~~~~ 190 (548)
+....
T Consensus 77 i~~~l 81 (1232)
T 3u4q_A 77 IAEAL 81 (1232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 117
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.14 Score=49.88 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=34.2
Q ss_pred cCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 81 DDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
.+.++|+++|--+...+.+++. -+..|--++.-.++ -.+.+++.||.|+|||+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 4668899998556666666543 12223333332222 247899999999999975
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.46 E-value=0.023 Score=50.63 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNV 176 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~ 176 (548)
|+=.++.|++|+|||.. ++-.+.+.... +.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~----------------g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIA----------------QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTT----------------TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHC----------------CCeEEEEeecC
Confidence 45578899999999976 44455555433 67899998875
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.31 E-value=0.034 Score=48.17 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
|+=.++.+++|+|||.- ++-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~----------------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA----------------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT----------------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc----------------CCeEEEEccc
Confidence 45578999999999954 45555555443 5789999886
No 120
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.1 Score=51.57 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=38.4
Q ss_pred ceeecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 77 TFFADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 77 ~~~~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
.....+.++|++++--+...+.+.+. -+..|--++...++. .+.+++.||.|+|||+.
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~---prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA---PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC---CCEEEEESCTTSSHHHH
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCeeEEECcCCCCHHHH
Confidence 33445778999998777777666542 222344444433332 47899999999999975
No 121
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.13 E-value=0.11 Score=49.68 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 568999999999999763
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.12 E-value=0.12 Score=48.00 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999764
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.92 E-value=0.14 Score=51.26 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999764
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.86 E-value=0.029 Score=53.99 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=26.7
Q ss_pred CcHHHHhhhhccc----CC---CcEEEEccCCCchhHHhHHHHHHHH
Q 045757 107 PSIVQAASVGPVL----SG---KDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 107 ~~~~Q~~~i~~i~----~g---~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
++|||.+++..+. +| +..++.||.|+|||..+. .+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHH
Confidence 4688888875554 34 248999999999997643 333333
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.1 Score=49.40 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=19.6
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
.+.++++.||+|+|||.+. -.++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3478999999999999774 33444443
No 126
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.73 E-value=0.16 Score=46.55 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=28.9
Q ss_pred CcccccCCCHHHHHHHHHCC--CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 84 VTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+|+++.-.+...+.+.+.- +..+..+... .+...+.+++.||+|+|||..+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 56888866666666664420 1111111111 1123467999999999999753
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.66 E-value=0.23 Score=47.27 Aligned_cols=15 Identities=33% Similarity=0.193 Sum_probs=12.5
Q ss_pred cCeeEEEEecchhhc
Q 045757 240 RGVKYVVFDEADMLL 254 (548)
Q Consensus 240 ~~~~~vV~DEah~l~ 254 (548)
.+.++|++||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999874
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.56 E-value=0.22 Score=42.78 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999763
No 129
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.11 E-value=0.075 Score=55.31 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred CCcHHHHhhhhcccC--CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHH
Q 045757 106 RPSIVQAASVGPVLS--GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVV 183 (548)
Q Consensus 106 ~~~~~Q~~~i~~i~~--g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~ 183 (548)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+. .+ ...++|.+|+.+-+....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-------------------~~~~~vtAP~~~a~~~l~ 234 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-------------------AGRAIVTAPAKASTDVLA 234 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-------------------SSCEEEECSSCCSCHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-------------------HhCcEEECCCHHHHHHHH
Confidence 578899999987765 34578999999999965443332 22 134799999987766544
Q ss_pred HHHHHhhcccCCCcEEEEEEeCCCCccCCCCcEEEeChHHHHhhcChhhhhccccccCeeEEEEecchhh
Q 045757 184 RMANALSADNGEPLVRAVAVCGGQGWPIGKPDVIVSTPAALLNNIDPKRRRRMEFVRGVKYVVFDEADML 253 (548)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~~~~~vV~DEah~l 253 (548)
+.... .|-+..|+.+.. ...+.++||+|||=++
T Consensus 235 ~~~~~--------------------------~i~~~~Pd~~~~-----------~~~~~dlliVDEAAaI 267 (671)
T 2zpa_A 235 QFAGE--------------------------KFRFIAPDALLA-----------SDEQADWLVVDEAAAI 267 (671)
T ss_dssp HHHGG--------------------------GCCBCCHHHHHH-----------SCCCCSEEEEETGGGS
T ss_pred HHhhC--------------------------CeEEeCchhhhh-----------CcccCCEEEEEchhcC
Confidence 33211 133345655421 1345889999999976
No 130
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.11 E-value=0.051 Score=51.94 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=33.0
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhh--hcccCCCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASV--GPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+|+++.-.+...+.+...-. .|....-+ ......+++++.||+|+|||+.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 355679999877777777765311 11111100 01112367999999999999764
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.71 E-value=0.14 Score=46.26 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.61 E-value=0.27 Score=52.75 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=64.1
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCc-ccccCCCCCCCEEEE
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDA-AARGIDIPNVSHVIQ 497 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~-~~~GiDip~v~~VI~ 497 (548)
+.+++|.++++..+...++.+.+. ++.+..+||+++..+|...++... ++.+|+|+|.. +...+++.++++||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 579999999999998888877654 789999999999999999999888 56899999954 445678888988886
Q ss_pred ecC
Q 045757 498 ADF 500 (548)
Q Consensus 498 ~~~ 500 (548)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 443
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.36 E-value=0.4 Score=40.94 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999753
No 134
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.3 Score=48.23 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=33.9
Q ss_pred ecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 80 ADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+.++|+++|--+...+.+.+. .+..|-.++...+ .-.+.+++.||.|+|||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 34668899997555555555432 1122222332222 22468999999999999753
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.01 E-value=0.064 Score=52.01 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHH-hhhh-cccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQA-ASVG-PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~-~~i~-~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|++++-.+...+.+...-. .|... +.+. .....+++++.||+|+|||+.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTH---HHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 45679998655555555544210 01000 0001 1122467999999999999764
No 136
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.76 E-value=0.2 Score=49.18 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+++++.||+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999753
No 137
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.58 E-value=0.18 Score=50.38 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999753
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.57 E-value=0.36 Score=47.03 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3578999999999999764
No 139
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.12 E-value=0.47 Score=47.74 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=50.8
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcccccCCCCCCCEEEEec
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~~GiDip~v~~VI~~~ 499 (548)
+.+++|.|.+...++++.+.|.+.++.+...... . .+ ....|.|+...+..|+-+|+...+|...
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~-~~g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EA-SDRGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GC-CTTCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hc-CCCcEEEEEcccccCcccCCCCEEEEEc
Confidence 5799999999999999999999988876544321 0 11 2347888888999999999988888754
No 140
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.97 E-value=0.45 Score=46.36 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999764
No 141
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.91 E-value=0.46 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
...++++.||+|+|||+.+
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3468999999999999753
No 142
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.38 E-value=2 Score=37.80 Aligned_cols=75 Identities=13% Similarity=0.301 Sum_probs=55.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c-----cccCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A-----ARGIDIPN 491 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~-----~~GiDip~ 491 (548)
...++||.++++..+..+++.+++. +..+..++|+.+..++...+. .+..+|+|+|.- + ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--KNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--cCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3458999999999999999888775 678999999988766543332 245699999942 1 23467778
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88888644
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.91 E-value=0.58 Score=41.22 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 144
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.89 E-value=0.69 Score=45.64 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc----ccCCCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKT---AGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA----RGIDIPNVS 493 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~----~GiDip~v~ 493 (548)
..+.++||.+|++..+..+++.+++ .++.+..++|+.+..++....+.+. ++.+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3578999999999999999999998 5789999999999988888888887 5589999994321 125556788
Q ss_pred EEEEecC
Q 045757 494 HVIQADF 500 (548)
Q Consensus 494 ~VI~~~~ 500 (548)
+||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8876443
No 145
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.51 E-value=2.1 Score=38.73 Aligned_cols=75 Identities=8% Similarity=0.254 Sum_probs=55.9
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-----cc--ccCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-----AA--RGIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-----~~--~GiDip 490 (548)
..+.++||.++++..+..+++.+++. ++.+..++|+.+..++... ..++.+|+|+|.- +. .++++.
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LAKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HHTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hcCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 34568999999999999998888765 7889999999886554432 3467799999932 21 456778
Q ss_pred CCCEEEEec
Q 045757 491 NVSHVIQAD 499 (548)
Q Consensus 491 ~v~~VI~~~ 499 (548)
.+++||.-.
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 888887644
No 146
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.44 E-value=1.9 Score=41.54 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=29.8
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHh-hhh-cccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAA-SVG-PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~-~i~-~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|+++.-.+...+.+.+.-. .|.... .+. .....+.+++.||+|+|||+.+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 34568887655655555544210 011000 000 1123468999999999999753
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.16 E-value=1.6 Score=42.28 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.||.|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999753
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.98 E-value=0.94 Score=44.07 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999753
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.94 E-value=0.42 Score=45.73 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.86 E-value=1.9 Score=41.23 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=25.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 85 TWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 85 ~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+|+++--.+...+.+...-.. .-...++++.||.|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~------------~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQ------------PRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTC------------TTCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhh------------CCCCCeEEEECCCCCCHHHHH
Confidence 356665566666666542100 012235999999999999753
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.83 E-value=1.2 Score=42.79 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999764
No 152
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.68 E-value=1.1 Score=42.23 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
...++.||.|+|||..+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 19 ISILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999997643
No 153
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.34 E-value=3.7 Score=35.59 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=54.4
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc-cCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR-GIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~-GiDip 490 (548)
..+.++||.++++..++.+++.+.+. +..+..++|+.+..+.. ..+.++.+|+|+|. .+.. .+++.
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 34568999999999999999888765 56788899998765543 23446779999994 2222 34667
Q ss_pred CCCEEEEec
Q 045757 491 NVSHVIQAD 499 (548)
Q Consensus 491 ~v~~VI~~~ 499 (548)
++++||.-.
T Consensus 146 ~~~~lViDE 154 (206)
T 1vec_A 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred cCCEEEEEC
Confidence 788887643
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.33 E-value=0.27 Score=40.40 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.2
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..+.++++.|++|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 3467899999999999964
No 155
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.31 E-value=0.31 Score=40.11 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35679999999999999764
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.30 E-value=0.42 Score=45.34 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999653
No 157
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.25 E-value=2.8 Score=41.33 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
.-+++.+++|+|||.+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999998743
No 158
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.13 E-value=0.57 Score=45.93 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=35.6
Q ss_pred eeecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 78 FFADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 78 ~~~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
....+.++|+++|--+...+.+.+. -+..|--++...++. .+.+++.||.|+|||+.
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP---PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---CSEEEEESSTTTTHHHH
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCCCceECCCCchHHHH
Confidence 3345678999997555555555432 122344444333322 46899999999999975
No 159
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.09 E-value=0.81 Score=51.29 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeCccc----ccCCCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKT---AGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTDAAA----RGIDIPNVS 493 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~~~~----~GiDip~v~ 493 (548)
..+.++||.++++..+..+++.+++ .++.+..+||+++..+|....+.+. ++.+|+|+|.-.- .-++..+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3577999999999999999999998 5678999999999988888888888 4589999994221 115567889
Q ss_pred EEEEecC
Q 045757 494 HVIQADF 500 (548)
Q Consensus 494 ~VI~~~~ 500 (548)
+||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8887543
No 160
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.74 E-value=1.8 Score=46.41 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
+.+++.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999964
No 161
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.74 E-value=0.27 Score=46.33 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=32.9
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhh-cccCCCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVG-PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~-~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+|++++-.+...+.+.+.-. .|..+...... .+..++.+++.||+|+|||+.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 355779999766666666654210 01000111111 1234678999999999999753
No 162
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.67 E-value=2.4 Score=38.12 Aligned_cols=74 Identities=8% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccc-ccCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAA-RGIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~-~GiDip~v 492 (548)
.+.++||.++++..+..+++.+++. ++.+..++|+.+..+.... ++.+.+|+|+|. .+. ..+++.++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---LERGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---hcCCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 4678999999999999888777654 7889999999887765443 345689999994 222 24577888
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8887643
No 163
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.00 E-value=4.4 Score=39.14 Aligned_cols=75 Identities=13% Similarity=0.292 Sum_probs=55.6
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c-----cccCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A-----ARGIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~-----~~GiDip 490 (548)
..+.++||.|+++..++.+++.+.+. ++.+..++|+.+..+....+. .+..+|+|+|.- + ...+++.
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--KNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--HSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--cCCCCEEEECHHHHHHHHHcCCcccc
Confidence 34669999999999999999988876 788999999988766554332 145699999932 2 2345677
Q ss_pred CCCEEEEe
Q 045757 491 NVSHVIQA 498 (548)
Q Consensus 491 ~v~~VI~~ 498 (548)
++++||.-
T Consensus 152 ~~~~vViD 159 (391)
T 1xti_A 152 HIKHFILD 159 (391)
T ss_dssp TCSEEEEC
T ss_pred ccCEEEEe
Confidence 88887753
No 164
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.97 E-value=2.5 Score=47.62 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=63.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEe-CcccccCCCCCCCEEE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCT-DAAARGIDIPNVSHVI 496 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T-~~~~~GiDip~v~~VI 496 (548)
.+.+++|.++++..++..++.+.+. ++.+..+++..+..++...++... ++.+|+|+| ..+...+++.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4679999999999999888888753 578899999999999999998888 568999999 4555568888888877
Q ss_pred Ee
Q 045757 497 QA 498 (548)
Q Consensus 497 ~~ 498 (548)
.-
T Consensus 731 iD 732 (1151)
T 2eyq_A 731 VD 732 (1151)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.83 E-value=0.41 Score=47.32 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=36.5
Q ss_pred CceeecCCCcccccCCCHHHHHHHHHC---CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 76 DTFFADDNVTWKSLGLSDRLIRALENS---GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 76 ~~~~~~~~~~~~~l~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
......+.++|++++--+...+.+.+. -+..|--++.-.+ .-.+.+++.||.|+|||+.+
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 344456778999998555555555442 1122222332222 22478999999999999753
No 166
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.69 E-value=0.28 Score=48.57 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=34.8
Q ss_pred cCCCcccccCCCHHHHHHHHHCC---CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENSG---FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+.++|++++--+...+.+++.= +..|-.++.-. +.-.+.+++.||.|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 46689999986666777665531 11222222222 123478999999999999753
No 167
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.50 E-value=0.58 Score=46.65 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCE 180 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~ 180 (548)
...+++|.|+||+|||.. +-.++..++.. +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~----------------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR----------------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT----------------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC----------------CCcEEEEeCCCchhH
Confidence 357999999999999987 44455555543 567888899887754
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.27 E-value=0.88 Score=53.51 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=29.6
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
.+.++++.+|+|+|||..+...+.+.. . .+.+++|+..--.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~----------------~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R----------------EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T----------------TTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H----------------cCCcEEEEEcccc
Confidence 467999999999999987655544433 2 2678888876533
No 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=85.98 E-value=3.2 Score=34.56 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=48.5
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+++.-+.++.+.+.... +.+..++|+.... .+..+|+|+|. .+..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~--------- 97 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG-------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VAAR--------- 97 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGTT---------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc---------
Confidence 5689999999999999999888763 7788888875422 46789999993 2211
Q ss_pred cccccCeeEEEEec
Q 045757 236 MEFVRGVKYVVFDE 249 (548)
Q Consensus 236 ~~~~~~~~~vV~DE 249 (548)
-.++.++++||.-+
T Consensus 98 Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 98 GIDIENISLVINYD 111 (163)
T ss_dssp TCCCSCCSEEEESS
T ss_pred CCchhcCCEEEEeC
Confidence 12366777877643
No 170
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.42 E-value=3.7 Score=36.68 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEe-----Ccccc-cCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCT-----DAAAR-GIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T-----~~~~~-GiDip 490 (548)
..+.++||.++++..+..+++.+++. +..+..++|+.+.... ...+. +...|+|+| +.+.. .+++.
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 35679999999999999999988875 4567777887553332 23344 447999999 23333 36677
Q ss_pred CCCEEEEec
Q 045757 491 NVSHVIQAD 499 (548)
Q Consensus 491 ~v~~VI~~~ 499 (548)
.+++||.-.
T Consensus 173 ~~~~lViDE 181 (237)
T 3bor_A 173 WIKMFVLDE 181 (237)
T ss_dssp TCCEEEEES
T ss_pred cCcEEEECC
Confidence 788877643
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.40 E-value=0.91 Score=42.93 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||.|+|||..+
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 172
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.38 E-value=4 Score=36.20 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c-----cccCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A-----ARGIDIP 490 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~-----~~GiDip 490 (548)
..+.++||.++++..+..+++.+++. ++.+..++|+....++...+ .+.+|+|+|.- + ...+++.
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 34679999999999999999988875 56788999998876654432 46799999942 1 1345667
Q ss_pred CCCEEEEe
Q 045757 491 NVSHVIQA 498 (548)
Q Consensus 491 ~v~~VI~~ 498 (548)
++++||.-
T Consensus 166 ~~~~lViD 173 (230)
T 2oxc_A 166 SIRLFILD 173 (230)
T ss_dssp GCCEEEES
T ss_pred cCCEEEeC
Confidence 78877753
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.13 E-value=0.36 Score=45.92 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHh-hhh-cccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAA-SVG-PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~-~i~-~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+.++|++++--+...+.+.+.-. .|.+.. .+. .....+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 45679999866666666654210 111100 000 1122368999999999999653
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.12 E-value=0.9 Score=43.72 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=25.8
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
....+++++++++.+.+.+ ...+..+++.||||||||..
T Consensus 101 ~~~~~l~~lg~~~~l~~l~------------------~~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 101 SKVLTMEELGMGEVFKRVS------------------DVPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSCCCTTTTTCCHHHHHHH------------------HCSSEEEEEECSTTSCHHHH
T ss_pred CCCCCHHHcCChHHHHHHH------------------hCCCCEEEEECCCCCCHHHH
Confidence 3445677888766433221 12345789999999999975
No 175
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.07 E-value=0.9 Score=42.78 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.3
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHH
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLC 147 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~ 147 (548)
++++++.||+|+|||..+. .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999997643 3444444
No 176
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=84.90 E-value=3.6 Score=36.64 Aligned_cols=73 Identities=12% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-cc----cc--cCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAG----IECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-AA----AR--GIDIPN 491 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-~~----~~--GiDip~ 491 (548)
.+.++||.++++..+..+++.+++.+ +.+..++|+.+..+....+ ++.+|+|+|. .+ .. .++..+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 46789999999999999999888764 6788899987655443322 4679999994 22 22 366677
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 172 ~~~lViDE 179 (236)
T 2pl3_A 172 LQMLVLDE 179 (236)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 88777543
No 177
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.61 E-value=1.5 Score=41.10 Aligned_cols=96 Identities=19% Similarity=0.098 Sum_probs=51.3
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEE
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVR 199 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 199 (548)
.| -+.+.+|.|+|||...+-.+.... .. ..+.+++++..--.+... .++++.-..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~-~~--------------g~g~~vlyId~E~s~~~~---ra~~lGvd~------ 82 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYM-RQ--------------YPDAVCLFYDSEFGITPA---YLRSMGVDP------ 82 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHH-HH--------------CTTCEEEEEESSCCCCHH---HHHHTTCCG------
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHH-hc--------------CCCceEEEEeccchhhHH---HHHHhCCCH------
Confidence 45 678999999999976544444333 22 125678888765544332 244443211
Q ss_pred EEEEeCCCCccCCCCcEEEeChHHHHhh-cChhhhhccccccCeeEEEEecchhhc
Q 045757 200 AVAVCGGQGWPIGKPDVIVSTPAALLNN-IDPKRRRRMEFVRGVKYVVFDEADMLL 254 (548)
Q Consensus 200 ~~~~~g~~~~~~~~~~Ilv~Tp~~l~~~-l~~~~~~~~~~~~~~~~vV~DEah~l~ 254 (548)
-++++..|..+.+. +..........-..+++||+|=+..+.
T Consensus 83 --------------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --------------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13455544333222 110000000112358999999999875
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.35 E-value=1.4 Score=42.22 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=27.6
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
-.|.-++|.+|+|+|||.. ++.++..+... +..++++..-..
T Consensus 59 ~~G~i~~I~GppGsGKSTL-al~la~~~~~~----------------gg~VlyId~E~s 100 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTL-ALHAIAEAQKM----------------GGVAAFIDAEHA 100 (356)
T ss_dssp ETTEEEEEEESTTSSHHHH-HHHHHHHHHHT----------------TCCEEEEESSCC
T ss_pred cCCcEEEEECCCCCCHHHH-HHHHHHHHHhc----------------CCeEEEEecccc
Confidence 3456788999999999965 34444443322 567888876433
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.24 E-value=1.1 Score=39.09 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
+++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999763
No 180
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.68 E-value=3.6 Score=36.26 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcc------cccCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA------ARGIDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~------~~GiDip~ 491 (548)
..+.++||.++++..+..+++.+.+. +..+..++|+.+..++... + .+.+|+|+|.-. ...+++..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L-RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C-TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C-CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 45679999999999999999888764 6778889998765544322 2 237899999421 23566777
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88887543
No 181
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.66 E-value=0.3 Score=45.29 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHH-Hhhhhcc--cCCCcEEEEccCCCchhHH
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQ-AASVGPV--LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--~~g~~~ii~a~TGsGKTl~ 137 (548)
+..+|++++--+.+.+.+.+.-. .|+. .+.+..+ .-.+.+++.||.|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 35679999876777776654211 1111 1122211 1124499999999999964
No 182
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.51 E-value=4.5 Score=34.98 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=54.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc--CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccc-ccCCCCCCCE
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA--GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAA-RGIDIPNVSH 494 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~-~GiDip~v~~ 494 (548)
.+.++||.++++..+..+++.+++. ...+..++|+.+....... +..+..|+|+|. .+. ..+++.++++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA---LLRGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH---HHHCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH---hhCCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 4678999999999999999999887 3578888888775544332 235679999994 222 2466778888
Q ss_pred EEEec
Q 045757 495 VIQAD 499 (548)
Q Consensus 495 VI~~~ 499 (548)
||.-.
T Consensus 148 iViDE 152 (207)
T 2gxq_A 148 AVLDE 152 (207)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87643
No 183
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.36 E-value=5.5 Score=33.13 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..++||.|+++.-+..+.+.+.... +.+..++|+.... .+...|+|+|. .+..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~--------- 92 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LLAR--------- 92 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GGTT---------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hhhc---------
Confidence 5689999999999999998887753 6788888875422 46789999993 2211
Q ss_pred cccccCeeEEEEe
Q 045757 236 MEFVRGVKYVVFD 248 (548)
Q Consensus 236 ~~~~~~~~~vV~D 248 (548)
..++.++++||.-
T Consensus 93 G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 93 GIDVQQVSLVINY 105 (165)
T ss_dssp TCCCCSCSEEEES
T ss_pred CCCcccCCEEEEe
Confidence 1235667777753
No 184
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.13 E-value=1.5 Score=43.20 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+++.||||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 355688999999999975
No 185
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.03 E-value=3 Score=36.99 Aligned_cols=74 Identities=8% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cc-cccCCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA---GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AA-ARGIDIPNVS 493 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~-~~GiDip~v~ 493 (548)
.+.++||.++++..+..+++.+.+. +..+..++|+.+..++. ..+..+.+|+|+|. .+ ...+++.+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 5678999999999999999999885 67788888887654433 33446689999993 11 2356778888
Q ss_pred EEEEec
Q 045757 494 HVIQAD 499 (548)
Q Consensus 494 ~VI~~~ 499 (548)
+||.-.
T Consensus 170 ~lViDE 175 (228)
T 3iuy_A 170 YLVIDE 175 (228)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 887644
No 186
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=83.00 E-value=5.4 Score=34.28 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+++.-+..+.+.+.... +.+..+.|+.... .+..+|+|+|. .+..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~~~~--------- 116 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-VASK--------- 116 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-HHHT---------
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-chhc---------
Confidence 4579999999999999999888763 7788888885432 46789999993 2211
Q ss_pred cccccCeeEEEE
Q 045757 236 MEFVRGVKYVVF 247 (548)
Q Consensus 236 ~~~~~~~~~vV~ 247 (548)
-.++.++++||.
T Consensus 117 Gldi~~v~~VI~ 128 (191)
T 2p6n_A 117 GLDFPAIQHVIN 128 (191)
T ss_dssp TCCCCCCSEEEE
T ss_pred CCCcccCCEEEE
Confidence 123667777776
No 187
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.77 E-value=1.6 Score=39.34 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.5
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTA 149 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~ 149 (548)
.|.-+++.|++|+|||.-.+-.+.+.....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~ 58 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY 58 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 456789999999999965444444444443
No 188
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.51 E-value=8.5 Score=34.92 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccc--ccCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAA--RGIDIPN 491 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~--~GiDip~ 491 (548)
.+.++||.++++..++.+++.+++. +..+..+.|+....+... .+..+.+|+|+|. .+. .++++.+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNGINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCCCCEEEEcHHHHHHHHHccCCccccc
Confidence 4678999999999999999988874 566788888877655433 3345689999993 222 2467788
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 202 l~~lViDE 209 (262)
T 3ly5_A 202 LQCLVIDE 209 (262)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 88887643
No 189
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.51 E-value=3.3 Score=42.88 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc---cCCcEEEEeC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ---EKGGVFVCTD 481 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~---~~~~vLv~T~ 481 (548)
.+.+||.++++..++...+.|.+.++.+..++|+++..++..+...+. ++.+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 569999999999999999999999999999999999999988888873 5679999996
No 190
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.30 E-value=3.8 Score=41.72 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEeC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCTD 481 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T~ 481 (548)
.+.+||.++++..++...+.|.+.++.+..++++.+..++..+...+. ++.+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 468999999999999999999999999999999999999888888887 6779999883
No 191
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=81.16 E-value=2.6 Score=32.39 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
....++++||.+-..+...+..|...|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 45679999999999999999999999999999999853
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.97 E-value=0.74 Score=50.29 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.||+|+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999764
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.76 E-value=4.3 Score=39.64 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.6
Q ss_pred CCcEEE--EccCCCchhHHh
Q 045757 121 GKDVVI--AAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii--~a~TGsGKTl~~ 138 (548)
+..+++ .|+.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 356888 899999999753
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.36 E-value=0.76 Score=42.94 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHH-hhhhcc-cCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQA-ASVGPV-LSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~-~~i~~i-~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|+++.-.+...+.+...-. .+... +.+..+ ..++.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34568888766766666654210 01000 001111 23578999999999999753
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.60 E-value=1.6 Score=44.18 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=25.1
Q ss_pred HHHHCCCCCCcHHHHhhhhc-ccCCCcEEEEccCCCchhHH
Q 045757 98 ALENSGFGRPSIVQAASVGP-VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 98 ~l~~~~~~~~~~~Q~~~i~~-i~~g~~~ii~a~TGsGKTl~ 137 (548)
.+.+.| .+++.+..-+.. +..|.++++.||||||||..
T Consensus 238 ~l~~~G--~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 238 DLIEKG--TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHTT--SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hHHhcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555 244444444443 34678899999999999964
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.59 E-value=0.79 Score=41.79 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCCcccccCCCHHHHHHHHHCC--CCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 82 DNVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
...+|+++.-.+...+.+...- +..+..++... ....+.+++.||+|+|||..+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 3456888876666665554320 10111111100 111357999999999999653
No 197
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.97 E-value=0.9 Score=41.31 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcc--cCCCcEEEEccCCCchhHH
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV--LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~g~~~ii~a~TGsGKTl~ 137 (548)
...+|+++.-.+.....+++.-. ... ....+..+ .-.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 34578888766666555544311 000 01222221 1124599999999999964
No 198
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.20 E-value=2.4 Score=41.40 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 120 SGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
.+.+++|.|+||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~----------------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM----------------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT----------------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH----------------CCCEEEEEeCCcC
Confidence 567999999999999976433 3333322 2577888888754
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.91 E-value=1.6 Score=46.93 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||+|+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6899999999999764
No 200
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.84 E-value=15 Score=35.54 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=53.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----ccc-ccCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAA-RGIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~-~GiDip~v 492 (548)
.+.++||.++++..+..+++.+++. ++.+..++|+....+.. ....++.+|+|+|. .+. ...++.++
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---HHhcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 5668999999999999998888765 67788899988765432 22346679999993 222 33567778
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 165 ~~vIiDE 171 (400)
T 1s2m_A 165 SLFIMDE 171 (400)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 8877643
No 201
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.80 E-value=2.6 Score=37.79 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=31.2
Q ss_pred ccCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMAN 187 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~ 187 (548)
+..|.-+++.|++|+|||....-.+ ..+... +..++++.-. +-..++.+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~-~~~~~~----------------~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL-WNGLKM----------------GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH-HHHHHT----------------TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH-HHHHhc----------------CCeEEEEEcc-CCHHHHHHHHH
Confidence 3456788999999999997643333 333222 4577877643 23344444443
No 202
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.39 E-value=9.5 Score=37.83 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=54.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc-CC---ceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-ccc-----ccCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA-GI---ECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-AAA-----RGIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-~~~-----~GiDip~v 492 (548)
.+.++||.|+++..+...++.+.+. +. .+..+||+....++.... .+.+|+|+|. .+. ..++..++
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~ivv~T~~~l~~~~~~~~~~~~~~ 126 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW----ARAKVIVATPQTIENDLLAGRISLEDV 126 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH----HHCSEEEECHHHHHHHHHTTSCCTTSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc----cCCCEEEecHHHHHHHHhcCCcchhhc
Confidence 5779999999999999999888876 55 899999999887765443 3568999993 222 23566778
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 127 ~~vIiDE 133 (494)
T 1wp9_A 127 SLIVFDE 133 (494)
T ss_dssp SEEEEET
T ss_pred eEEEEEC
Confidence 8887643
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=77.33 E-value=3.5 Score=36.48 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.0
Q ss_pred ccCCCcEEEEccCCCchhHHh
Q 045757 118 VLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~ 138 (548)
+..|.-+++.||+|+|||...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHH
Confidence 445678899999999999653
No 204
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.27 E-value=12 Score=36.23 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=54.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc-cCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR-GIDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~-GiDip~ 491 (548)
..+.++||.++++..+..+++.+.+. ++.+..++|+....+.... ...+..|+|+|. .+.. .++...
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 45679999999999999999988765 4678888999877665433 335678999993 3333 356667
Q ss_pred CCEEEEe
Q 045757 492 VSHVIQA 498 (548)
Q Consensus 492 v~~VI~~ 498 (548)
+++||.-
T Consensus 180 ~~~vViD 186 (410)
T 2j0s_A 180 IKMLVLD 186 (410)
T ss_dssp CCEEEEE
T ss_pred eeEEEEc
Confidence 7877753
No 205
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.22 E-value=13 Score=35.68 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c-----cccCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A-----ARGIDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~-----~~GiDip~ 491 (548)
..+.++||.++++..+..+++.+.+. +..+..++|+.+..+....+. +.+|+|+|.- + ...++...
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 45679999999999999988888764 678899999988766554443 5689999932 1 12355667
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 77777543
No 206
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=77.18 E-value=8.7 Score=34.51 Aligned_cols=73 Identities=8% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----c-ccCCCCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----A-RGIDIPNVS 493 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~-~GiDip~v~ 493 (548)
+.++||.++++..+..+++.+++. ++.+..++|+.+..+... .+..+.+|+|+|.- + . ..+++..++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 468999999999999998888764 467788888877555432 33467799999942 2 1 235777888
Q ss_pred EEEEec
Q 045757 494 HVIQAD 499 (548)
Q Consensus 494 ~VI~~~ 499 (548)
+||.-.
T Consensus 177 ~lViDE 182 (253)
T 1wrb_A 177 YIVLDE 182 (253)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 877543
No 207
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.14 E-value=4.6 Score=34.48 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+++.-+..+.+.+.... +.+..+.|+.... .+...|+|+|. .+..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~~--------- 108 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAAR--------- 108 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTT-------CCEEEEC--------CHHHHHHHHTSSSEEEEEC--------------
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcC-------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhhc---------
Confidence 5789999999999999998887753 6788888875432 35788999993 2211
Q ss_pred cccccCeeEEEE
Q 045757 236 MEFVRGVKYVVF 247 (548)
Q Consensus 236 ~~~~~~~~~vV~ 247 (548)
..++.++++||.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 123566777775
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.79 E-value=6.6 Score=42.74 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358999999999999753
No 209
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.64 E-value=4.3 Score=36.40 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=49.8
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhh-ccCCcEEEEeC-----cccc---cCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNF-QEKGGVFVCTD-----AAAR---GID 488 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f-~~~~~vLv~T~-----~~~~---GiD 488 (548)
..+.++||.++++..+..+++.+.+. +..+..++++.....+ .... .++.+|+|+|. .+.. +++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 35668999999999999999998876 5666666665321111 1111 24568999992 1112 477
Q ss_pred CCCCCEEEEec
Q 045757 489 IPNVSHVIQAD 499 (548)
Q Consensus 489 ip~v~~VI~~~ 499 (548)
+.++++||.-.
T Consensus 173 ~~~~~~lViDE 183 (245)
T 3dkp_A 173 LASVEWLVVDE 183 (245)
T ss_dssp CTTCCEEEESS
T ss_pred cccCcEEEEeC
Confidence 88898887644
No 210
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=76.64 E-value=1.2 Score=42.85 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.6
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4455667865 566799999999874
No 211
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=76.49 E-value=5.8 Score=34.74 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=51.2
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc-cC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA--------GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR-GI 487 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~-Gi 487 (548)
..+.++||.++++..+..+++.+++. +..+..++|+.+..+. .+.+..+.+|+|+|. .+.. .+
T Consensus 70 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLNVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCSSCCSEEEECHHHHHHHHHTTCC
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcCCCCCEEEeCHHHHHHHHHcCCC
Confidence 34678999999999999998887764 5678888888654332 222334668999993 2222 35
Q ss_pred CCCCCCEEEEe
Q 045757 488 DIPNVSHVIQA 498 (548)
Q Consensus 488 Dip~v~~VI~~ 498 (548)
++..+++||.-
T Consensus 147 ~~~~~~~lViD 157 (219)
T 1q0u_A 147 DVHTAHILVVD 157 (219)
T ss_dssp CGGGCCEEEEC
T ss_pred CcCcceEEEEc
Confidence 66778877753
No 212
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.48 E-value=5.6 Score=44.37 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=58.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CC----ceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-cccccCC-CCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GI----ECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-AAARGID-IPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-~~~~GiD-ip~v 492 (548)
.+.++||.++++..+..+++.+++. ++ .+..++|+.+..++.+..+.+++ .+|+|+|. .+..-+. +.++
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSCCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhccC
Confidence 4679999999999999999888764 45 78999999999888888888877 99999994 2222222 5577
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 177 ~~lViDE 183 (1054)
T 1gku_B 177 DFIFVDD 183 (1054)
T ss_dssp SEEEESC
T ss_pred CEEEEeC
Confidence 8877543
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.44 E-value=1.3 Score=40.47 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.9
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|+-+.+.||||+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44677899999999999975
No 214
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=76.28 E-value=9.1 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeCh
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTP 221 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp 221 (548)
..++||.|+++.-+..+.+.+.... +.+..++|+.... .+..+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 5689999999999999999888763 6788888875422 46788999993
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.14 E-value=1.9 Score=37.83 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=25.5
Q ss_pred CcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 107 PSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 107 ~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
-+.-|..++..+..|.-+.+.+|+|+|||...
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456777777878888999999999999753
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=76.03 E-value=1.7 Score=39.68 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.+.++++.|++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999965
No 217
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.01 E-value=1.8 Score=36.73 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~ 138 (548)
..++.+++.|++|+|||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45678999999999999764
No 218
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.75 E-value=14 Score=36.45 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc-cCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR-GIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~-GiDip~v 492 (548)
.+.++||.++++..+..+++.+++. ++.+..++|+.+..++... +..+.+|+|+|. .+.+ .+++..+
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---ITRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HTTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hhcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 3568999999999999999988875 4678889999887665433 345779999993 2223 3567778
Q ss_pred CEEEEe
Q 045757 493 SHVIQA 498 (548)
Q Consensus 493 ~~VI~~ 498 (548)
++||.-
T Consensus 205 ~~lVlD 210 (434)
T 2db3_A 205 RFVVLD 210 (434)
T ss_dssp CEEEEE
T ss_pred CeEEEc
Confidence 887753
No 219
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=75.60 E-value=12 Score=27.94 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=42.3
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-cCCcE
Q 045757 427 TMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-EKGGV 476 (548)
Q Consensus 427 ~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~v 476 (548)
.+||.......+.+...++..|+.+..++++-....|.+-+..|. .+..|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888999999999999999999999999888888898887 34443
No 220
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.45 E-value=1.3 Score=40.98 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCCcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcc--cCCCcEEEEccCCCchhHH
Q 045757 82 DNVTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPV--LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 82 ~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~g~~~ii~a~TGsGKTl~ 137 (548)
...+|+++...+.....+++.-. ... ....+..+ .-.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 44568888777766666654311 000 01122211 1124599999999999964
No 221
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.05 E-value=3 Score=44.70 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=35.3
Q ss_pred eecCCCcccccCCCHHHHHHHHHC-CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 79 FADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 79 ~~~~~~~~~~l~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
...+.++|++++.-+...+.|.+. -+...+|.+..-+ .+...+.+++.+|.|+|||+.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 334567899998888888877654 2211111111100 112236799999999999965
No 222
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=74.79 E-value=1.9 Score=41.14 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.8
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5677788876 456799999999874
No 223
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.78 E-value=4.2 Score=38.25 Aligned_cols=24 Identities=33% Similarity=0.145 Sum_probs=18.4
Q ss_pred hcccCCCcEEEEccCCCchhHHhH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
..+..|.-+++.|++|+|||...+
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHH
Confidence 445566788999999999996533
No 224
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=74.72 E-value=1.5 Score=41.02 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999764
No 225
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.69 E-value=4 Score=37.18 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCCCcHHHHhh-hhcccCCC-----cEEEEccCCCchhHHhH
Q 045757 94 RLIRALENSGFGRPSIVQAAS-VGPVLSGK-----DVVIAAETGSGKTHSYL 139 (548)
Q Consensus 94 ~l~~~l~~~~~~~~~~~Q~~~-i~~i~~g~-----~~ii~a~TGsGKTl~~~ 139 (548)
.+.+.|+..|++ +++... +..+++++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 677778877874 555333 45555442 58999999999997653
No 226
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=74.53 E-value=1.3 Score=44.19 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=32.2
Q ss_pred cCCCcccccCCCHHHHHHHHHCCCCCCcHHHHh-hhh-cccCCCcEEEEccCCCchhHHh
Q 045757 81 DDNVTWKSLGLSDRLIRALENSGFGRPSIVQAA-SVG-PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 81 ~~~~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~-~i~-~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
....+|++++-.+...+.+...-. .|.+.. .+. .....+.+++.||+|+|||+.+
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 355789999766666666654210 111100 000 1122478999999999999753
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.33 E-value=1.9 Score=36.66 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-++++||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999964
No 228
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.24 E-value=1.9 Score=41.27 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677788876 456799999999884
No 229
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=74.17 E-value=6.2 Score=33.18 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
..++||.|+++..+..+.+.+.+.. +.+..++|+.... .+..+|+|+|.- +. .
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~-----~ 96 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDG-------HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA-----R 96 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC-----T
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh-----c
Confidence 5689999999999999988887653 6788888875432 467899999931 11 1
Q ss_pred cccccCeeEEEE
Q 045757 236 MEFVRGVKYVVF 247 (548)
Q Consensus 236 ~~~~~~~~~vV~ 247 (548)
..++..+++||.
T Consensus 97 Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 97 GIDVKQVTIVVN 108 (175)
T ss_dssp TTCCTTEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 233667888874
No 230
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=74.16 E-value=1.6 Score=37.75 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456789999999999854
No 231
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.97 E-value=1.5 Score=41.43 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=17.8
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345567765 566799999999874
No 232
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=73.83 E-value=8.6 Score=33.58 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc----------cCCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW----------PIGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+++.-+..+.+.+.+.. +.+..++|+... ..+..+|+|+|.- +. .
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~-----~ 93 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA-----R 93 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT-------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh-----c
Confidence 5799999999999999998888763 778888888553 2567899999932 11 1
Q ss_pred cccccCeeEEEE
Q 045757 236 MEFVRGVKYVVF 247 (548)
Q Consensus 236 ~~~~~~~~~vV~ 247 (548)
..++.++++||.
T Consensus 94 Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 94 GLDIPQVDLVVH 105 (212)
T ss_dssp SSSCCCBSEEEE
T ss_pred CCCCccCcEEEE
Confidence 233667777773
No 233
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=73.64 E-value=2.2 Score=48.33 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=29.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHH
Q 045757 124 VVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVV 177 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~ 177 (548)
-+|.|..|||||.+.+--+...+.+. ..+..+|+|||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~--------------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA--------------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC--------------TTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC--------------CCCCcEEEEecCcc
Confidence 37889999999998666666555432 13468999999763
No 234
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=73.58 E-value=13 Score=36.56 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHhH
Q 045757 121 GKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~ 139 (548)
++-+.+.++.|+|||....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457788999999997643
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.54 E-value=2 Score=37.27 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.++.+++.|++|+|||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999764
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.50 E-value=3.6 Score=38.34 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHhH
Q 045757 120 SGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~ 139 (548)
.++.+.+.+++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999998643
No 237
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.35 E-value=1.7 Score=41.58 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=17.7
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345567765 566799999999873
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.11 E-value=5.5 Score=37.81 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=18.3
Q ss_pred hcccCCCcEEEEccCCCchhHHhH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
..+..|.-+++.|++|+|||.-.+
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHH
Confidence 345566778999999999996543
No 239
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=72.93 E-value=1.7 Score=41.17 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
+.++|.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999653
No 240
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.86 E-value=1.8 Score=41.48 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=17.8
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 345567765 466799999999873
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.84 E-value=2.8 Score=42.31 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHhhhhcccCCCcEEEEccCCCchhHH
Q 045757 110 VQAASVGPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 110 ~Q~~~i~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
.-..++-.+..+.++++.||+|+|||..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344445556789999999999999964
No 242
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=72.64 E-value=1.7 Score=41.91 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=17.7
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345567765 566799999999873
No 243
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.53 E-value=1.7 Score=42.37 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=17.7
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567765 566799999999874
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.45 E-value=1.9 Score=41.58 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|+.+.+.||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.43 E-value=5.3 Score=39.63 Aligned_cols=28 Identities=29% Similarity=0.063 Sum_probs=19.9
Q ss_pred hcccCCCcEEEEccCCCchhHHhHHHHH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYLVPLI 143 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~l~il 143 (548)
..+..|.-+++.|++|+|||.-.+-.+.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4455667789999999999965433333
No 246
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=72.35 E-value=1.7 Score=41.46 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=17.0
Q ss_pred hcccCCCc--EEEEccCCCchhHHh
Q 045757 116 GPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 116 ~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
..+++|.| ++..|.||||||++.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 44556755 566799999999874
No 247
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.31 E-value=1.5 Score=41.79 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=17.4
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344556755 466799999999873
No 248
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=72.22 E-value=1.7 Score=41.71 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=17.6
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344567765 566799999999873
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.81 E-value=5.1 Score=35.87 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.2
Q ss_pred cccCCCcEEEEccCCCchhHHhH
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
.+-.|.-+.+.||+|+|||....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 34467788999999999997543
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.78 E-value=1.9 Score=36.45 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
++-+++.|+.|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999653
No 251
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.66 E-value=1.8 Score=41.28 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=17.6
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..+.||||||++.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345567765 466799999999873
No 252
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.61 E-value=1.8 Score=40.93 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.8
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555667765 566799999999874
No 253
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.46 E-value=1.9 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=17.7
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345567755 566799999999874
No 254
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=71.44 E-value=1.8 Score=41.38 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=18.6
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4455667865 466799999999874
No 255
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.42 E-value=2.4 Score=39.70 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+.++++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999753
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.41 E-value=5 Score=40.03 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=27.6
Q ss_pred CcccccCCCHHHHHHHHHCCCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 84 VTWKSLGLSDRLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 84 ~~~~~l~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
..|+++.-.+...+.+... -.........++++++.||+|+|||+.+
T Consensus 34 ~~~~~iiG~~~~~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVI--------VELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEESCHHHHHHHHHH--------HHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhccCHHHHHHHHHHH--------HHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3467775555555544321 0011112234578999999999999764
No 257
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.39 E-value=1.9 Score=41.39 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.2
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3455567865 456699999999873
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.38 E-value=2.4 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456788999999999964
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.27 E-value=1.8 Score=41.71 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+.++++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 260
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.26 E-value=1.9 Score=41.54 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=17.9
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445567765 566799999999873
No 261
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=71.25 E-value=6.6 Score=31.12 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=31.2
Q ss_pred CcEEEEe-CChhHHHHHHHHHHHcCCceEEecCCCC
Q 045757 425 SRTMVFA-NTVDAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 425 ~~~lVF~-~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
.+++||| .+-..+..++..|...|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 7899999 5778888999999999999999999864
No 262
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=71.18 E-value=1.8 Score=41.81 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=17.2
Q ss_pred hcccCCCc--EEEEccCCCchhHHh
Q 045757 116 GPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 116 ~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
..+++|.| ++..|.||||||++.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44567765 556799999999874
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.13 E-value=1.2 Score=42.24 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.3
Q ss_pred hcccCCCcEEEEccCCCchhHHh
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 33445789999999999999653
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.05 E-value=4.8 Score=35.63 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.0
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
++++.++.|+|||...+ -+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a~-~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML-QAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCcHHHHHH-HHHHHHHH
Confidence 68899999999998744 34444433
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=71.04 E-value=2.4 Score=36.09 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
++.+++.|++|+|||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999764
No 266
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.74 E-value=1.8 Score=41.53 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=18.3
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3455567765 566799999999873
No 267
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=70.74 E-value=6.9 Score=38.83 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=20.3
Q ss_pred hcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
..+..|.-+++.|++|+|||... +-++..+
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~la-l~ia~~~ 224 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFA-LTIAQNA 224 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHH-HHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHH-HHHHHHH
Confidence 34445667899999999999654 3333333
No 268
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.67 E-value=2 Score=41.95 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=19.3
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5566778866 466799999999884
No 269
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.64 E-value=2.1 Score=40.08 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=13.3
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
+-++|.||||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999965
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=70.38 E-value=2.9 Score=36.34 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.7
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|+-++++||+|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34677899999999999964
No 271
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=70.35 E-value=4.1 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=18.2
Q ss_pred ccCCCcEEEEccCCCchhHHhHHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..|.-+++.+++|+|||......
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHH
Confidence 445677899999999999764433
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.33 E-value=3 Score=36.37 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCCCcHHHHhhhhcccCC----CcEEEEccCCCchhHHhHHHHHHHH
Q 045757 94 RLIRALENSGFGRPSIVQAASVGPVLSG----KDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 94 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~g----~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
.+.+-|+-.|+ .+-.. ...+..++.+ +.+++.+|.|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45555554454 33333 3444444443 35899999999999764 3444433
No 273
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=70.32 E-value=4.8 Score=31.70 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCChhH--HHHHHHHHHHcCCceEEecCCCC
Q 045757 422 AETSRTMVFANTVDA--VYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~--~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
....+++|||.+-.. +..++..|...|+.+..+.|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 456789999999876 88999999999999888888853
No 274
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=70.19 E-value=1.9 Score=41.71 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=17.8
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345567765 566799999999884
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.15 E-value=2.7 Score=36.46 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=16.0
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..|.-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999965
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.15 E-value=2.4 Score=39.65 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-++|+||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999653
No 277
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=70.13 E-value=2.1 Score=39.96 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 278
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.09 E-value=3.8 Score=30.82 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~ 458 (548)
.+..++++||.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3467899999999999999999999999999999884
No 279
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=69.98 E-value=2.5 Score=40.72 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=19.2
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5567778865 456699999999874
No 280
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.96 E-value=5 Score=29.67 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=31.5
Q ss_pred CcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCC
Q 045757 425 SRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 425 ~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
.++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999999888888864
No 281
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.88 E-value=2.7 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.4
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+.+.||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367789999999999964
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=69.83 E-value=2.3 Score=36.37 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.4
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|.-+++.|++|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567789999999999964
No 283
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.81 E-value=7.5 Score=38.70 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=20.7
Q ss_pred hcccCCCcEEEEccCCCchhHHhHHHHHHHH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
..+..|.-+++.|++|+|||...+ -++..+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l-~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFAL-NIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHH-HHHHHH
Confidence 445566788999999999996543 333333
No 284
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=69.48 E-value=2.4 Score=42.45 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCcccccCCCHHHHHHHHHC--CCCCCcHHHHhhhhcccCCCcEEEEccCCCchhHHh
Q 045757 83 NVTWKSLGLSDRLIRALENS--GFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+|+++.-.+...+.+.+. .+..+..++.-. +.-.+.+++.||+|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 45688886555555555432 111122111110 111356999999999999753
No 285
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.20 E-value=1.9 Score=41.59 Aligned_cols=24 Identities=42% Similarity=0.690 Sum_probs=17.5
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 345566765 566799999999873
No 286
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.15 E-value=2.3 Score=41.24 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.6
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|+.+++.||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999975
No 287
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.01 E-value=1.9 Score=41.51 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=18.5
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455667765 566799999999874
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=69.00 E-value=6.9 Score=38.62 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.-+++++++|+|||.+.
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788999999999874
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=68.65 E-value=3 Score=36.09 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.||+|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999964
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.62 E-value=7.3 Score=36.07 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=17.7
Q ss_pred cccCCCcEEEEccCCCchhHHh
Q 045757 117 PVLSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..|.-+++.|++|+|||...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHH
Confidence 3456778899999999999654
No 291
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=68.57 E-value=3.7 Score=31.04 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~ 458 (548)
....++++||.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3467899999999999999999999999999999884
No 292
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.56 E-value=13 Score=34.43 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcc------c-ccCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA-----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA------A-RGIDI 489 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~------~-~GiDi 489 (548)
..+.++||.++++..+..+++.+... ++.+..++|+....... +.+.+|+|+|.-- . ..+++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ------KISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC------CCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh------cCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 34558999999999999998888775 35667777765432211 3456899999422 1 35778
Q ss_pred CCCCEEEEec
Q 045757 490 PNVSHVIQAD 499 (548)
Q Consensus 490 p~v~~VI~~~ 499 (548)
.+++++|.-.
T Consensus 234 ~~l~~lVlDE 243 (300)
T 3fmo_B 234 KKIKVFVLDE 243 (300)
T ss_dssp GGCSEEEETT
T ss_pred hhceEEEEeC
Confidence 8899888643
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.44 E-value=2.2 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 294
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.34 E-value=2.1 Score=41.84 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5566677865 466699999999874
No 295
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.24 E-value=2.3 Score=41.99 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=17.8
Q ss_pred hhcccCCCc--EEEEccCCCchhHHh
Q 045757 115 VGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 115 i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
+..+++|.| ++..|.||||||++.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344567865 566799999999874
No 296
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.21 E-value=2.1 Score=41.20 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999763
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.12 E-value=2.7 Score=38.12 Aligned_cols=16 Identities=38% Similarity=0.198 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-+++.||+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999754
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.03 E-value=3.1 Score=35.45 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 299
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=67.95 E-value=3.4 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+++.||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 577889999999999964
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=67.12 E-value=3.6 Score=34.48 Aligned_cols=17 Identities=18% Similarity=0.515 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
+..+++.|+.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46789999999999975
No 301
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=67.08 E-value=22 Score=34.41 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=52.2
Q ss_pred CcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-----cccc-cCCCCCCCE
Q 045757 425 SRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-----AAAR-GIDIPNVSH 494 (548)
Q Consensus 425 ~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-----~~~~-GiDip~v~~ 494 (548)
.++||.++++..+..+++.+++. ++.+..++|+.+..+... .+..+.+|+|+|. .+.. .+++..+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 178 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERGCHLLVATPGRLVDMMERGKIGLDFCKY 178 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCCCCEEEEChHHHHHHHHcCCcChhhCcE
Confidence 57999999999999999888764 577889999987665433 3345679999994 1222 356677887
Q ss_pred EEEe
Q 045757 495 VIQA 498 (548)
Q Consensus 495 VI~~ 498 (548)
||.-
T Consensus 179 iViD 182 (417)
T 2i4i_A 179 LVLD 182 (417)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7753
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.06 E-value=2.5 Score=36.05 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-+++.|+.|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 303
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=66.79 E-value=2.6 Score=39.99 Aligned_cols=19 Identities=47% Similarity=0.705 Sum_probs=16.5
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..|+.+.+.+|||+|||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3688999999999999963
No 304
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.74 E-value=2.6 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57889999999999753
No 305
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=66.66 E-value=4.4 Score=30.81 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~ 458 (548)
.+..+++++|.+-..+...+..|.+.|+.+..+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3567899999998899999999999999998888884
No 306
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=66.59 E-value=7.9 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~ 459 (548)
....+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 45678999999988999999999999985 888888854
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.58 E-value=6.3 Score=45.82 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=56.1
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEE
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAV 201 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 201 (548)
+-+.+.+|.|||||..++-.+.+ .... +..++++.+=-+|.... +++++-+.+
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~-~~~~----------------g~~~~~i~~e~~~~~~~---~~~~Gv~~~------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAA-AQRE----------------GKTCAFIDAEHALDPIY---ARKLGVDID------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-HHHT----------------TCCEEEECTTSCCCHHH---HHHTTCCGG-------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH-HHhc----------------CCeEEEEecCCCCCHHH---HHHcCCCHH-------
Confidence 46789999999999885544444 4333 78999998866665554 555543221
Q ss_pred EEeCCCCccCCCCcEEEeChHHH---HhhcChhhhhccccccCeeEEEEecchhhcc
Q 045757 202 AVCGGQGWPIGKPDVIVSTPAAL---LNNIDPKRRRRMEFVRGVKYVVFDEADMLLC 255 (548)
Q Consensus 202 ~~~g~~~~~~~~~~Ilv~Tp~~l---~~~l~~~~~~~~~~~~~~~~vV~DEah~l~~ 255 (548)
+++++-|+.- +..+... ..-..+++||+|.+-.+..
T Consensus 1485 -------------~l~~~~p~~~e~~l~~~~~~-----~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -------------NLLCSQPDTGEQALEICDAL-----ARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------------GCEEECCSSHHHHHHHHHHH-----HHHTCCSEEEESCSTTCCC
T ss_pred -------------HeEEeCCCcHHHHHHHHHHH-----HHcCCCCEEEEccHHhCCc
Confidence 2677777443 3332211 1123589999999987753
No 308
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.51 E-value=2.4 Score=40.65 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCc--EEEEccCCCchhHHh
Q 045757 120 SGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~--~ii~a~TGsGKTl~~ 138 (548)
.|.+ ++..|.||||||++.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3665 578899999999874
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=65.92 E-value=2.4 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|.-+.+.||+|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 310
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.34 E-value=2.9 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999754
No 311
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=65.06 E-value=3.4 Score=38.92 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.++++||||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999653
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.02 E-value=7.2 Score=36.39 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|.-+.+.||+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556779999999999753
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=64.91 E-value=4.2 Score=34.84 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=12.9
Q ss_pred CcEEEEccCCCchhH
Q 045757 122 KDVVIAAETGSGKTH 136 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl 136 (548)
+-++++||.|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 347899999999995
No 314
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.83 E-value=7.5 Score=36.30 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|.-+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 556778999999999753
No 315
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.61 E-value=8.6 Score=39.01 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
+.+++.||+|+|||..+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999753
No 316
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.61 E-value=35 Score=32.92 Aligned_cols=90 Identities=13% Similarity=0.244 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhc-cCCcEEEEe
Q 045757 406 QVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQ-EKGGVFVCT 480 (548)
Q Consensus 406 ~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~-~~~~vLv~T 480 (548)
|.....-.+...+.....+.++||.++++..+..+++.+++. +..+..++|+...... ...+. ++..|+|+|
T Consensus 90 KT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T 166 (414)
T 3eiq_A 90 KTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGT 166 (414)
T ss_dssp SHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEEC
T ss_pred ccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEEC
Confidence 444333333333333345778999999999999999988775 5677788888665443 33444 667999999
Q ss_pred C-----cccc-cCCCCCCCEEEEe
Q 045757 481 D-----AAAR-GIDIPNVSHVIQA 498 (548)
Q Consensus 481 ~-----~~~~-GiDip~v~~VI~~ 498 (548)
. .+.. .++...+++||.-
T Consensus 167 ~~~l~~~l~~~~~~~~~~~~vViD 190 (414)
T 3eiq_A 167 PGRVFDMLNRRYLSPKYIKMFVLD 190 (414)
T ss_dssp HHHHHHHHHHTSSCSTTCCEEEEC
T ss_pred HHHHHHHHHcCCcccccCcEEEEE
Confidence 3 2222 3556667777653
No 317
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=64.48 E-value=7 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~ 458 (548)
....+++|||.+-..+..++..|...|+. +..+.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 35678999999999999999999999985 88888884
No 318
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.30 E-value=15 Score=39.52 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=49.2
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----ccc-C-CCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----ARG-I-DIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~~G-i-Dip~v 492 (548)
++++||.|+++..+....+.+++. ++.+..+||+.+...+.. .+..+.+|+|+|.- + ..+ + ++.++
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 372 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH---HHHHTCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH---HhhCCCCEEEEchHHHHHHHHhccccccccC
Confidence 789999999999999888877765 899999999986655432 23356799999932 2 222 3 45667
Q ss_pred CEEEEe
Q 045757 493 SHVIQA 498 (548)
Q Consensus 493 ~~VI~~ 498 (548)
++||.-
T Consensus 373 ~~iViD 378 (797)
T 4a2q_A 373 TLMIFD 378 (797)
T ss_dssp SEEEET
T ss_pred CEEEEE
Confidence 888753
No 319
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.07 E-value=7.6 Score=37.09 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.5
Q ss_pred ccCCCcEEEEccCCCchhHHhHHHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLVPL 142 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l~i 142 (548)
+-.|.-+++.++.|+|||...+..+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456778999999999997644433
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.99 E-value=4.3 Score=34.62 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=13.3
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3477899999999964
No 321
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.79 E-value=7.8 Score=39.08 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchhHHhH
Q 045757 120 SGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~~ 139 (548)
.+.+++|.++||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 322
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=63.55 E-value=4.6 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+.+.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999964
No 323
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=63.50 E-value=9.5 Score=32.85 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEc
Q 045757 121 GKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLC 173 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~ 173 (548)
...+++..++|.|||.+++-.++..+. . +.+|+|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g-~----------------G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG-H----------------GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH-T----------------TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-C----------------CCeEEEEE
Confidence 358999999999999987666665553 2 67888884
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=63.45 E-value=2.8 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|..+++.|+.|+|||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567889999999999753
No 325
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=63.17 E-value=4.6 Score=35.05 Aligned_cols=16 Identities=38% Similarity=0.464 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-.++.|+.|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3689999999999864
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.01 E-value=3.9 Score=38.81 Aligned_cols=16 Identities=44% Similarity=0.428 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-++|+||||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999653
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.91 E-value=3.2 Score=35.33 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|..+++.|+.|||||...
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=62.84 E-value=3.2 Score=34.95 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-+++.|+.|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999753
No 329
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.81 E-value=14 Score=37.62 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----ccc-C-CCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----ARG-I-DIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~~G-i-Dip~v 492 (548)
+.++||.++++..+...++.+.+. ++.+..++|+.+...+.. .+..+.+|+|+|.- + ..+ + ++.++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 128 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQ---HIIEDNDIIILTPQILVNNLNNGAIPSLSVF 128 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHH---HHHHHCSEEEECHHHHHHHHHTSSSCCGGGC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHH---HHhcCCCEEEECHHHHHHHHhcCcccccccC
Confidence 778999999999888888877765 899999999986554422 22345789999932 2 222 3 55667
Q ss_pred CEEEEe
Q 045757 493 SHVIQA 498 (548)
Q Consensus 493 ~~VI~~ 498 (548)
++||.-
T Consensus 129 ~~vViD 134 (555)
T 3tbk_A 129 TLMIFD 134 (555)
T ss_dssp SEEEET
T ss_pred CEEEEE
Confidence 887763
No 330
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.74 E-value=1.8 Score=39.57 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999764
No 331
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.70 E-value=4.6 Score=34.94 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|..+++.|+.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3677899999999999653
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.38 E-value=8.6 Score=36.82 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=27.0
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
-.|.-+++.++.|+|||..++-.+.. +... +..++|+..-
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~-~~~~----------------g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA-AQRE----------------GKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH-HHHT----------------TCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHHC----------------CCeEEEEeCC
Confidence 34677899999999999765443333 3322 4578888753
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.35 E-value=4.2 Score=33.88 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.14 E-value=10 Score=31.81 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=15.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHHH
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKL 146 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~ 146 (548)
-+.+.++.|+|||.. +..++..+
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhh
Confidence 467889999999964 33344444
No 335
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=62.07 E-value=8 Score=36.13 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
++-+.+.+++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345778999999999764
No 336
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.99 E-value=3 Score=38.96 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999764
No 337
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.75 E-value=9.2 Score=43.31 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=41.3
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCcHHHHHHHHHHHHHhh
Q 045757 123 DVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 190 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt~~L~~q~~~~~~~~~ 190 (548)
..+|.|.-|||||.+-.-.++..+... + .... ......-..+|+|+=|+.=+.++.+.+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~-g---~~~~-~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGL-G---GSAA-FPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTC-S---SSSS-CSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcC-C---cccc-cCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 459999999999998666666665421 0 0000 0011123479999999999999887776554
No 338
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.70 E-value=19 Score=36.52 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=50.0
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----ccc-C-CCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----ARG-I-DIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~~G-i-Dip~v 492 (548)
+.++||.++++..+...++.+.+. ++.+..++|+.+..++.. .+..+.+|+|+|.- + ..| + ++..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 131 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE---KVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 131 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHH---HHHHHCSEEEECHHHHHHHHHSSSCCCSTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHH---HhhCCCCEEEECHHHHHHHHHhCcccccccC
Confidence 678999999999999888888765 899999999986555432 22345789999932 2 222 3 56778
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 132 ~~vViDE 138 (556)
T 4a2p_A 132 TLMIFDE 138 (556)
T ss_dssp SEEEEET
T ss_pred CEEEEEC
Confidence 8887643
No 339
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=61.57 E-value=7.7 Score=30.74 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~ 459 (548)
....+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35678999999988999999999999985 888999963
No 340
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=61.46 E-value=32 Score=32.39 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=52.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----c-ccCCCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----A-RGIDIPNV 492 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~-~GiDip~v 492 (548)
.+.++||.++++..+..+++.+.+. +..+..++|+....+....+ .+.+|+|+|.- + . ..+++.++
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~~~~~~~~~~~ 148 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----KNANIVVGTPGRILDHINRGTLNLKNV 148 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----HTCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----CCCCEEEecHHHHHHHHHcCCcccccC
Confidence 4678999999999999999888774 57788899988766544333 25789999932 1 1 23556777
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 149 ~~iIiDE 155 (367)
T 1hv8_A 149 KYFILDE 155 (367)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8777533
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.11 E-value=4.1 Score=35.40 Aligned_cols=22 Identities=27% Similarity=0.040 Sum_probs=17.0
Q ss_pred hcccCCCcEEEEccCCCchhHH
Q 045757 116 GPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 116 ~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
+.+..+.-+.+.|++|+|||..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 4444566788999999999964
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=60.53 E-value=4.4 Score=39.38 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-++|.||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999653
No 343
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=60.43 E-value=9.6 Score=36.61 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.7
Q ss_pred cCCCcEEEEccCCCchhHHhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCEEEEcCc
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPN 175 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~il~~~~~~~~~~~~~~~~~~~~~~~~~~Lil~Pt 175 (548)
-.|.-++|.++.|+|||...+ .++..+... +..++|+..-
T Consensus 72 ~~G~li~I~G~pGsGKTtlal-~la~~~~~~----------------g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLAL-AIVAQAQKA----------------GGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHH-HHHHHHHHT----------------TCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHH-HHHHHHHHC----------------CCeEEEEECC
Confidence 446678899999999996543 344444332 4578887654
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=60.22 E-value=9.8 Score=32.22 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|..+++.|+.|+|||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567889999999999764
No 345
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.13 E-value=2.6 Score=40.23 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 357999999999999653
No 346
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.11 E-value=9.9 Score=38.77 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.6
Q ss_pred CcEEEEccCCCchhHHhHHHHHH
Q 045757 122 KDVVIAAETGSGKTHSYLVPLIE 144 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~l~il~ 144 (548)
.+++|.|.||||||.+.-..++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999874433333
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.76 E-value=5.7 Score=34.24 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999753
No 348
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=59.65 E-value=4.2 Score=36.13 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=12.0
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
..|.-+.+.||+|+|||..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999975
No 349
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=59.47 E-value=5.2 Score=41.43 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.42 E-value=9.3 Score=35.93 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCchhHHhH
Q 045757 121 GKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~ 139 (548)
++-+.+.+++|+|||.+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997643
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=59.33 E-value=5.6 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=15.8
Q ss_pred cccCCCcEEEEccCCCchhHH
Q 045757 117 PVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~ 137 (548)
.+..|+-+.+.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 455677889999999999964
No 352
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.31 E-value=7.4 Score=48.19 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh-hh---hcccCCCcEEEEccCCCchhHHhH
Q 045757 91 LSDRLIRALENSGFGRPSIVQAA-SV---GPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~-~i---~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
+...+.+.+.++|+ .+.+.+.. ++ ..+...+.+++.||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34566677778887 45555433 33 334456789999999999998863
No 353
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.25 E-value=3.6 Score=35.17 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345889999999999764
No 354
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=59.23 E-value=9.7 Score=36.44 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|.-+.+.+|+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 456779999999999753
No 355
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=58.99 E-value=5.4 Score=33.19 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
+++++.++.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999764
No 356
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.81 E-value=4.4 Score=43.75 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=32.3
Q ss_pred ecCCCcccccCCCHHHHHHHHHC-CCCCCcHHHHhhh-hcccCCCcEEEEccCCCchhHH
Q 045757 80 ADDNVTWKSLGLSDRLIRALENS-GFGRPSIVQAASV-GPVLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 80 ~~~~~~~~~l~l~~~l~~~l~~~-~~~~~~~~Q~~~i-~~i~~g~~~ii~a~TGsGKTl~ 137 (548)
.....+|++++--+.+.+.+.+. .+..-++ .... ..+..++.+++.+|+|+|||+.
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~--~~~~~~~~~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHP--DKFLKFGMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSC--TTTTCCCCCCCCCCCCBCCTTSSHHHH
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhch--HHHHhcCCCCCceeEEECCCCCCHHHH
Confidence 34556788886556666666543 1111010 0001 1123467899999999999975
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=58.78 E-value=4 Score=34.85 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-+++.|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 358
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=58.38 E-value=10 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
|.-+.+.+|+|+|||..
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678999999999975
No 359
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.27 E-value=7.5 Score=33.71 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=45.5
Q ss_pred CCCcEEEEeCChhHHHH-HHHHHHHc---CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----cc-------c
Q 045757 423 ETSRTMVFANTVDAVYA-VTKILKTA---GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----AR-------G 486 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~-l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~~-------G 486 (548)
.+.++||+|+++..++. +.+.+.+. ++.+..++|+.....+... ...+..|+|+|.- + .. +
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPE---VVKSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHH---HHHHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHh---hccCCCEEEECHHHHHHHHhccCcccccc
Confidence 46799999999998887 65655543 6788888887543322211 1235789999932 2 12 2
Q ss_pred CCCCCCCEEEEec
Q 045757 487 IDIPNVSHVIQAD 499 (548)
Q Consensus 487 iDip~v~~VI~~~ 499 (548)
+.+.++++||.-.
T Consensus 158 ~~~~~~~~iIiDE 170 (216)
T 3b6e_A 158 VQLSDFSLIIIDE 170 (216)
T ss_dssp CCGGGCSEEEETT
T ss_pred cchhcccEEEEEC
Confidence 5566777777533
No 360
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.17 E-value=5.1 Score=34.62 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|.-+.+.|+.|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999754
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.09 E-value=6 Score=35.73 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|+.+++.|++|+|||...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999764
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=57.46 E-value=6.4 Score=34.73 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.4
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
-.|+-+++.||.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567788999999999964
No 363
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=57.41 E-value=5.8 Score=34.26 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.-++++|+.|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 364
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=57.35 E-value=19 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~ 458 (548)
....+++++|.+-..+...+..|.+.|+. +..+ |++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 35678999999988999999999999986 5555 664
No 365
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=57.29 E-value=11 Score=37.71 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|.-+.+.|++|+|||...
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 345778999999999753
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.19 E-value=6.2 Score=33.71 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+..+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=56.95 E-value=6.6 Score=32.92 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.0
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999754
No 368
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=56.70 E-value=21 Score=33.13 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+++.-+..+.+.+.... +.+..++|+.... .+..+|+|+|-- +. .
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g-------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~-----~ 90 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA-----R 90 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT-----C
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh-----c
Confidence 5789999999999998888776653 7788888885532 467899999932 11 1
Q ss_pred cccccCeeEEEE
Q 045757 236 MEFVRGVKYVVF 247 (548)
Q Consensus 236 ~~~~~~~~~vV~ 247 (548)
..++.++++||.
T Consensus 91 Gidi~~v~~VI~ 102 (300)
T 3i32_A 91 GLDIPQVDLVVH 102 (300)
T ss_dssp STTCCCCSEEEE
T ss_pred CccccceeEEEE
Confidence 234667777774
No 369
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=56.68 E-value=6.5 Score=34.27 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.4
Q ss_pred cCCCcEEEEccCCCchhHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~ 138 (548)
..|..+++.|+.|+|||...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34677889999999999754
No 370
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=56.57 E-value=11 Score=30.57 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCC-ceEEecCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGI-ECYCYHKDLS 459 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~ 459 (548)
...+++|||.+-..+..++..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999998888899999999998 5899999974
No 371
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=56.53 E-value=81 Score=26.92 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=68.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEe----CcccccCCCCCCCEEEEec
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCT----DAAARGIDIPNVSHVIQAD 499 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T----~~~~~GiDip~v~~VI~~~ 499 (548)
..+++++++.....+.+.+...+.+..+..+.+++.... ...+.+.++.+|+||- ..+..-+++| ..+
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v--~~a~~~~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRAS--KIAFGLQDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHH--HHHHHHTTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHH--HHHHHhcCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 357888888888888777777776777777777764322 3333334556899986 3344556766 234
Q ss_pred CCCCHHHHHHHhcccccCCCcceEEEEeecCchhHHHHHHHHHHcC
Q 045757 500 FATSAVDFLHRVGRTARAGQYGLVTSLYTESNRDLVDTIRRAAKLG 545 (548)
Q Consensus 500 ~p~s~~~~~Qr~GR~gR~g~~G~~i~~~~~~~~~~~~~i~~~~~~~ 545 (548)
.+.|.-++++.+-++.+.+. -.++ +--++-...++.+.+.++.+
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIav-vg~~~~~~~~~~~~~ll~~~ 119 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELAL-IAYKHSIVDKHEIEAMLGVK 119 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEE-EEESSCSSCHHHHHHHHTCE
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEE-EeCcchhhHHHHHHHHhCCc
Confidence 56778888888877766543 1222 22233334455555555543
No 372
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=56.43 E-value=6.6 Score=34.89 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccCCCcEEEEccCCCchhHHhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l 140 (548)
+-.|.-+.+.+|+|+|||.....
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 44567889999999999976433
No 373
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=56.40 E-value=11 Score=35.61 Aligned_cols=22 Identities=27% Similarity=0.151 Sum_probs=16.9
Q ss_pred cCCCcEEEEccCCCchhHHhHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLV 140 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l 140 (548)
-.|.-+++.|++|+|||...+.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHH
Confidence 3456789999999999965433
No 374
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=56.34 E-value=4.9 Score=35.92 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999995
No 375
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.29 E-value=4.5 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.||.|+|||...
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999653
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=56.19 E-value=6.4 Score=34.75 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 377
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=56.18 E-value=15 Score=27.96 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
....+++|||.+-..+...+..|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999999999999999999986677888854
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.13 E-value=6.3 Score=37.36 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.8
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999753
No 379
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=55.99 E-value=9.1 Score=31.05 Aligned_cols=37 Identities=3% Similarity=0.021 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCh--hHHHHHHHHHHHcCCceEEecCCCC
Q 045757 423 ETSRTMVFANTV--DAVYAVTKILKTAGIECYCYHKDLS 459 (548)
Q Consensus 423 ~~~~~lVF~~s~--~~~~~l~~~L~~~~~~~~~~~~~~~ 459 (548)
...+++|||.+- ..+..++..|...|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999998 5889999999999999999999953
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.97 E-value=4.8 Score=37.30 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-++++|+.|+|||..+
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999653
No 381
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=55.64 E-value=6.3 Score=36.18 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.5
Q ss_pred hhcccCCCcEEEEccCCCchhHHhHHH
Q 045757 115 VGPVLSGKDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 115 i~~i~~g~~~ii~a~TGsGKTl~~~l~ 141 (548)
+..+..|.-+++.||+|+|||......
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHHHHHH
Confidence 344567788999999999999764443
No 382
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=55.51 E-value=17 Score=35.87 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------cCCCCcEEEeCh
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------PIGKPDVIVSTP 221 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~Ilv~Tp 221 (548)
+.++||+||+++-++++.+.++... +++..++|.... ..+..+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-------~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-------KSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-------CCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-------CCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 5689999999999999999888763 678888884322 246789999994
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.35 E-value=5.4 Score=32.67 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999965
No 384
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=55.32 E-value=9.3 Score=30.65 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCC-ceEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGI-ECYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~~~~~~ 458 (548)
....+++|||.+-..+...+..|...|+ ++..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 4567899999999899999999999998 588999995
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.26 E-value=7.2 Score=34.23 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 386
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=55.17 E-value=4.1 Score=41.05 Aligned_cols=50 Identities=24% Similarity=0.344 Sum_probs=27.9
Q ss_pred CCcccccCCCHHHHHHHHHCC--CCCCcHHHHhhhhcc--cCCCcEEEEccCCCchhHH
Q 045757 83 NVTWKSLGLSDRLIRALENSG--FGRPSIVQAASVGPV--LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 83 ~~~~~~l~l~~~l~~~l~~~~--~~~~~~~Q~~~i~~i--~~g~~~ii~a~TGsGKTl~ 137 (548)
..+|+++.-.+.....+.+.- +..+ ..+..+ .-.+.+++.+|+|+|||+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHH
Confidence 456888865555555554321 1111 111111 1124599999999999975
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=55.13 E-value=4.9 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|..+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.04 E-value=7.9 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999764
No 389
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.93 E-value=6.8 Score=33.34 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.3
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-+++.+|+|+|||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999753
No 390
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.80 E-value=7 Score=33.11 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.63 E-value=6.8 Score=34.18 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.54 E-value=8.1 Score=32.65 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999764
No 393
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=54.42 E-value=29 Score=36.30 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCC----------ccCCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG----------WPIGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+|+.-++.+.+.+.... +++..++|+.. +..+..+|+|+|- .+. .
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~g-------i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~-----~ 507 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIG-------IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR-----E 507 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS-----T
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC-------CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh-----C
Confidence 5689999999999999988888763 67777777653 3357789999984 221 1
Q ss_pred cccccCeeEEEEecchh
Q 045757 236 MEFVRGVKYVVFDEADM 252 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~ 252 (548)
-..+.++++||+-+++.
T Consensus 508 GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADK 524 (661)
T ss_dssp TCCCTTEEEEEETTTTC
T ss_pred CcccCCCCEEEEeCccc
Confidence 23467899999988875
No 394
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.42 E-value=9.5 Score=46.71 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh-hh---hcccCCCcEEEEccCCCchhHHhH
Q 045757 91 LSDRLIRALENSGFGRPSIVQAA-SV---GPVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 91 l~~~l~~~l~~~~~~~~~~~Q~~-~i---~~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
+.+.+.+.+.+.|+ .+.+.+.. ++ ..+...+.+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456666677777 45555432 22 333456789999999999998864
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.35 E-value=7.7 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999764
No 396
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=54.33 E-value=6.4 Score=34.25 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.7
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.|.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455678999999999964
No 397
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=54.22 E-value=6.2 Score=34.75 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.5
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|.-+.+.+|+|+|||..
T Consensus 22 i~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp EESSEEEEEEESTTSSHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44567789999999999965
No 398
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=54.01 E-value=21 Score=38.09 Aligned_cols=70 Identities=4% Similarity=-0.065 Sum_probs=51.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcc------ccc------
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKT----AGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA------ARG------ 486 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~------~~G------ 486 (548)
.+..++|.|+|+..|.+.++++.. .|+.+..+.|+++..+|.... ++.|+|+|..- ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-----~~dIvvgTpgrl~fDyLrd~~~~~~~ 188 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-----AADITYGTNNEYGFDYLRDNMAFSPE 188 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECCchhhHHHHHhhhhccHh
Confidence 356899999999999988887765 489999999999987655432 47999999421 122
Q ss_pred -CCCCCCCEEEE
Q 045757 487 -IDIPNVSHVIQ 497 (548)
Q Consensus 487 -iDip~v~~VI~ 497 (548)
++..++.++|.
T Consensus 189 ~~~~~~l~~lVl 200 (853)
T 2fsf_A 189 ERVQRKLHYALV 200 (853)
T ss_dssp GCCCCSCCEEEE
T ss_pred HhcccCCcEEEE
Confidence 45567777764
No 399
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=53.85 E-value=9.8 Score=30.46 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=32.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~ 459 (548)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4678999999998999999999999985 899999853
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=53.81 E-value=7.2 Score=34.06 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.7
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=53.76 E-value=8.5 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
|..+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999753
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.55 E-value=8.1 Score=32.14 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999764
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.24 E-value=5.9 Score=33.48 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
-.+|.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568999999999964
No 404
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=53.22 E-value=5.9 Score=35.43 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|+-+.+.||+|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788899999999995
No 405
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=53.16 E-value=6 Score=39.07 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999753
No 406
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=53.10 E-value=22 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 407
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=52.76 E-value=9 Score=32.96 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999763
No 408
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.75 E-value=8.1 Score=36.02 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=16.1
Q ss_pred cCCCcEEEEccCCCchhHH
Q 045757 119 LSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~ 137 (548)
-.|+-+.|.+|+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677889999999999964
No 409
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.47 E-value=7.8 Score=32.90 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.8
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 410
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.35 E-value=7.1 Score=33.89 Aligned_cols=17 Identities=41% Similarity=0.260 Sum_probs=13.8
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
|.-+.+.||+|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44577899999999974
No 411
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.32 E-value=8.8 Score=33.23 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.6
Q ss_pred cCCCcEEEEccCCCchhHHh
Q 045757 119 LSGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~ 138 (548)
..+.-+++.|+.|||||...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH
Confidence 34677899999999999764
No 412
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=52.31 E-value=7.8 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 413
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.17 E-value=13 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.0
Q ss_pred CcEEEEccCCCchhHHhH
Q 045757 122 KDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~~ 139 (548)
..+++++++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999997643
No 414
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=52.08 E-value=7.5 Score=33.66 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999754
No 415
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=52.08 E-value=6.4 Score=32.63 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999754
No 416
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=51.90 E-value=32 Score=31.92 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcc-----c-ccCCCCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA-----A-RGIDIPNVS 493 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~-----~-~GiDip~v~ 493 (548)
+.++||.++++..++.+++.+++. +..+..++|+.+..+....+ .+.+|+|+|.-. . ..+++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 131 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----RNADIVVATPGRLLDLWSKGVIDLSSFE 131 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----TTCSEEEECHHHHHHHHHTTSCCGGGCS
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----CCCCEEEECHHHHHHHHHcCCcchhhCc
Confidence 578999999999999999988864 46888999998876544322 247899999321 1 234566777
Q ss_pred EEEEe
Q 045757 494 HVIQA 498 (548)
Q Consensus 494 ~VI~~ 498 (548)
+||.-
T Consensus 132 ~iViD 136 (337)
T 2z0m_A 132 IVIID 136 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77753
No 417
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.84 E-value=8.3 Score=32.95 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-+++.|+.|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 418
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=51.75 E-value=7.9 Score=34.01 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.2
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 419
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.65 E-value=6.4 Score=39.40 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||..+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999764
No 420
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=51.49 E-value=7.6 Score=34.09 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.+|.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677889999999999963
No 421
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=51.36 E-value=35 Score=36.50 Aligned_cols=70 Identities=7% Similarity=0.024 Sum_probs=53.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-cc------------cc
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKT----AGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-AA------------AR 485 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-~~------------~~ 485 (548)
.+..++|.++|+..|.+.++++.. .|+.+.++.|+++.++|.... ++.|+++|. -+ ..
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~-----~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY-----AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH-----HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECchhhhHHHHHHhhhcchh
Confidence 356899999999999998888765 489999999999987765432 478999994 12 12
Q ss_pred cCCCCCCCEEEE
Q 045757 486 GIDIPNVSHVIQ 497 (548)
Q Consensus 486 GiDip~v~~VI~ 497 (548)
.++...++++|.
T Consensus 198 ~l~lr~~~~lVl 209 (844)
T 1tf5_A 198 QMVQRPLHFAVI 209 (844)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhcccCCCEEEE
Confidence 356677777774
No 422
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=51.35 E-value=35 Score=31.62 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=40.1
Q ss_pred CcEEEEeCC-----------hhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 425 SRTMVFANT-----------VDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 425 ~~~lVF~~s-----------~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+-+|||+|. ...++.+.+.|+++|+.|. .+.+++.++-.+.++.|.
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~ 117 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFA 117 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHH
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHH
Confidence 458999988 6799999999999999976 556899999999999995
No 423
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=51.33 E-value=32 Score=36.08 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCC----------ccCCCCcEEEeChHHHHhhcChhhhhc
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQG----------WPIGKPDVIVSTPAALLNNIDPKRRRR 235 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 235 (548)
+.++||.|+|+.-++.+.+.+.... +++..++|+.. +..+..+|+|+|-- +. .
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~g-------i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~-----~ 501 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHG-------IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LR-----E 501 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CC-----T
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-------CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hh-----c
Confidence 5689999999999999998888764 67777777653 34577899999831 11 1
Q ss_pred cccccCeeEEEEecchh
Q 045757 236 MEFVRGVKYVVFDEADM 252 (548)
Q Consensus 236 ~~~~~~~~~vV~DEah~ 252 (548)
-..+.++++||+=+++.
T Consensus 502 GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADK 518 (664)
T ss_dssp TCCCTTEEEEEETTTTS
T ss_pred CccCCCCCEEEEeCCcc
Confidence 23467889998887764
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=51.22 E-value=6.6 Score=33.88 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999753
No 425
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=51.18 E-value=19 Score=30.91 Aligned_cols=18 Identities=28% Similarity=0.082 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-+.+.|+.|+|||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999753
No 426
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=51.16 E-value=6.4 Score=34.85 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||.|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999995
No 427
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=51.09 E-value=5.6 Score=33.57 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=11.1
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+.-+++.|+.|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 428
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=50.74 E-value=15 Score=29.66 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDL 458 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~ 458 (548)
....+++|||.+-..+..++..|...|+. +..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 35678999999999999999999999985 88888884
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=50.46 E-value=9.1 Score=33.50 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356899999999999754
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=50.45 E-value=11 Score=31.92 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=12.1
Q ss_pred EEEEccCCCchhHH
Q 045757 124 VVIAAETGSGKTHS 137 (548)
Q Consensus 124 ~ii~a~TGsGKTl~ 137 (548)
++|.+++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999943
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.43 E-value=8.7 Score=33.78 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
.+-+++.||.||||+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456788999999999764
No 432
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=50.27 E-value=6.7 Score=34.84 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|+-+.+.+|+|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788899999999995
No 433
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=49.90 E-value=6.5 Score=32.59 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.9
Q ss_pred cCCCcEEEEccCCCchhH
Q 045757 119 LSGKDVVIAAETGSGKTH 136 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl 136 (548)
..|.-+.+.+|.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356677899999999995
No 434
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=49.72 E-value=12 Score=37.67 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=17.7
Q ss_pred cccCCCcEEEEccCCCchhHHhH
Q 045757 117 PVLSGKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 117 ~i~~g~~~ii~a~TGsGKTl~~~ 139 (548)
.+..|.-++|.|++|+|||...+
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal 260 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVR 260 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHH
Confidence 34456778999999999996543
No 435
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=49.70 E-value=6.9 Score=41.60 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=18.9
Q ss_pred hhhcccCCCc--EEEEccCCCchhHHh
Q 045757 114 SVGPVLSGKD--VVIAAETGSGKTHSY 138 (548)
Q Consensus 114 ~i~~i~~g~~--~ii~a~TGsGKTl~~ 138 (548)
.+..+++|.| ++..|.||||||++.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5566677865 455699999999873
No 436
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=49.66 E-value=9.1 Score=33.05 Aligned_cols=16 Identities=38% Similarity=0.327 Sum_probs=13.2
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 437
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=49.64 E-value=1.1e+02 Score=25.30 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCccc
Q 045757 405 TQVDALIEAVKERLEFGAETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAAA 484 (548)
Q Consensus 405 ~~~~~l~~~l~~~~~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~~ 484 (548)
.....+.+.+.. .. ...+.+-|.|.+...+..+.+.|.+.|+.+..+.++.. . ....|.|+|--.+
T Consensus 45 ~e~~~i~~~I~~-~~--~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~--~~~~v~v~t~~~~ 110 (174)
T 3dmn_A 45 AGVDQVVDQLAM-ND--SERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------R--LAPGVIVVPSFLA 110 (174)
T ss_dssp HHHHHHHHHHHH-HH--HTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------C--CCSSEEEEEGGGC
T ss_pred HHHHHHHHHHHH-hc--cCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------c--cCCCeEEEEcccc
Confidence 334445555544 22 23678899999999999999999999988877765421 1 2347999999999
Q ss_pred ccCCCCCCCEEEEecCC
Q 045757 485 RGIDIPNVSHVIQADFA 501 (548)
Q Consensus 485 ~GiDip~v~~VI~~~~p 501 (548)
.|+-+ ++||.++..
T Consensus 111 KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 111 KGLEF---DAVIVWNAN 124 (174)
T ss_dssp TTCCE---EEEEEETCB
T ss_pred CCcCC---CEEEEecCC
Confidence 99865 778877753
No 438
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.50 E-value=8.9 Score=34.34 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|+.|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999764
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=49.49 E-value=9.2 Score=33.34 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.47 E-value=8.9 Score=32.31 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|+.+++.++.|+|||..+
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 5678999999999999653
No 441
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=49.39 E-value=9.2 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 442
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.34 E-value=9.3 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999753
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.26 E-value=7.4 Score=35.37 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+.+.+|+|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999963
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=49.26 E-value=7 Score=37.63 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.4
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-.+|.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999654
No 445
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=49.24 E-value=16 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.6
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
-+++.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999964
No 446
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=48.95 E-value=7.3 Score=39.85 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.|..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999753
No 447
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=48.93 E-value=7.2 Score=35.36 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999995
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.90 E-value=9.8 Score=33.13 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.6
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.||.||||+..+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 449
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=48.87 E-value=10 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999764
No 450
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=48.82 E-value=5.3 Score=42.31 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCCcEEEEeCChhHHHHH-HHHHHHcC---CceEEecCCCCHHHHHHHHHhhccCCcEEEEeC-ccc-----------cc
Q 045757 423 ETSRTMVFANTVDAVYAV-TKILKTAG---IECYCYHKDLSLEERAKTLVNFQEKGGVFVCTD-AAA-----------RG 486 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l-~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~-~~~-----------~G 486 (548)
.++++||.++++..+... ++.|++.. +.+..++|+.+..++.. .+.++.+|+|+|. .+. ..
T Consensus 55 ~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 55 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHH---HHHHSCSEEEEEHHHHHHHTC--------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHH---hhhcCCCEEEECHHHHHHHHhccccccccc
Confidence 347999999999998888 88887764 78999999976554332 2236789999993 222 23
Q ss_pred CCCCCCCEEEEe
Q 045757 487 IDIPNVSHVIQA 498 (548)
Q Consensus 487 iDip~v~~VI~~ 498 (548)
+.+.++++||.-
T Consensus 132 ~~~~~~~lvViD 143 (699)
T 4gl2_A 132 VQLSDFSLIIID 143 (699)
T ss_dssp CCGGGCSEEEEE
T ss_pred eecccCcEEEEE
Confidence 466778888864
No 451
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=48.77 E-value=13 Score=29.70 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~ 459 (548)
....+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34678999999998999999999999985 888888853
No 452
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=48.51 E-value=10 Score=34.16 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|..+.+.+|+|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999965
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.51 E-value=7.9 Score=35.50 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.||+|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999963
No 454
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=48.25 E-value=7.8 Score=33.07 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHh
Q 045757 124 VVIAAETGSGKTHSY 138 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~ 138 (548)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.24 E-value=9.4 Score=36.19 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.9
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
++++.||.|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999764
No 456
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.83 E-value=7.7 Score=34.73 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.+|+|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999996
No 457
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=47.81 E-value=8.5 Score=34.64 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+.+.+|+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577888999999999963
No 458
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=47.80 E-value=44 Score=30.38 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=40.3
Q ss_pred CCCcEEEEeC---------------------ChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 423 ETSRTMVFAN---------------------TVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 423 ~~~~~lVF~~---------------------s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+.+-+|||.| +...++.+.+.|+++|+.|. .+.+++.++-.+.++.|.
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~ 84 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQ 84 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHH
Confidence 4567888887 44689999999999999975 456899999999999996
No 459
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.79 E-value=10 Score=32.53 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 460
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=47.78 E-value=8 Score=35.17 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999995
No 461
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.64 E-value=7.9 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
.-++++|+.|||||..+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999764
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.56 E-value=6.9 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.+|+|+|||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999995
No 463
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=47.40 E-value=8.2 Score=35.13 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|+-+.+.+|+|+|||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 56778899999999996
No 464
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=47.33 E-value=15 Score=29.29 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCCc-eEEecCCCC
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGIE-CYCYHKDLS 459 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~ 459 (548)
...+++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4678999999988889999999999984 888989974
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.27 E-value=8.3 Score=34.94 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 56778899999999996
No 466
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.09 E-value=8.8 Score=35.00 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.3
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.||+|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999963
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=46.98 E-value=8.1 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999995
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.91 E-value=22 Score=36.08 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=22.0
Q ss_pred ccCCCcEEEEccCCCchhHHhHHHHHHHHHH
Q 045757 118 VLSGKDVVIAAETGSGKTHSYLVPLIEKLCT 148 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~~~l~il~~~~~ 148 (548)
+-.|.-+.+.+|+|+|||....+.++.-+..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4467889999999999997654433444443
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=46.81 E-value=8.5 Score=35.10 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778899999999996
No 470
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=46.77 E-value=34 Score=33.94 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=38.9
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------cCCCCcEEEeCh
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------PIGKPDVIVSTP 221 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~Ilv~Tp 221 (548)
+.++||.||++.-++.+.+.++... +.+..+.|.... ..+..+|+|+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-------~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-------KKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-------CCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-------CcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 5689999999999999999888763 677788876432 246789999994
No 471
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.76 E-value=11 Score=32.00 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHh
Q 045757 124 VVIAAETGSGKTHSY 138 (548)
Q Consensus 124 ~ii~a~TGsGKTl~~ 138 (548)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 472
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=46.69 E-value=20 Score=33.17 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhHHh
Q 045757 120 SGKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~~ 138 (548)
.++-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999764
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=46.59 E-value=25 Score=29.47 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.7
Q ss_pred cEEEEccCCCchhHH
Q 045757 123 DVVIAAETGSGKTHS 137 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~ 137 (548)
-+.+.++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 477899999999964
No 474
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=46.55 E-value=6.3 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=12.9
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
-+.+.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999753
No 475
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.32 E-value=8.2 Score=37.22 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.4
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
+-.++.|+||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468999999999975
No 476
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=46.27 E-value=19 Score=35.36 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=39.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCc------cCCCCcEEEeCh
Q 045757 166 RAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGW------PIGKPDVIVSTP 221 (548)
Q Consensus 166 ~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~Ilv~Tp 221 (548)
+.++||+||++.-++.+.+.+++. + +++..++|+... ..+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~---~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----G---KKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----T---CCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----C---CeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 458999999999999999988876 2 678888887321 246789999995
No 477
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.25 E-value=11 Score=33.59 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHH
Q 045757 121 GKDVVIAAETGSGKTHS 137 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~ 137 (548)
+..+++.|+.|+|||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999965
No 478
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=46.25 E-value=73 Score=26.33 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc-c---CCcEEEEeCcccccCCCCCCCEEEEecC-CCCHHHHH
Q 045757 434 VDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ-E---KGGVFVCTDAAARGIDIPNVSHVIQADF-ATSAVDFL 508 (548)
Q Consensus 434 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~-~---~~~vLv~T~~~~~GiDip~v~~VI~~~~-p~s~~~~~ 508 (548)
...++.+.+.|+.+|+.|. .+.+++..+-.+.++.|. . ....+|+. +++.|.. ..|+-.|. +.+..+..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~-ilSHG~~----g~i~g~D~~~v~i~~i~ 127 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLMDHSNMDCFICC-ILSHGDK----GIIYGTDGQEAPIYELT 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSCCTTCSCEEEE-EESCEET----TEEECTTSCEEEHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHhhccCCCEEEEE-eCCCCCC----CEEEeeCCCEeeHHHHH
Confidence 5788999999999999985 567899999999999996 2 22333332 4455542 44544443 24455555
Q ss_pred HHh
Q 045757 509 HRV 511 (548)
Q Consensus 509 Qr~ 511 (548)
...
T Consensus 128 ~~F 130 (164)
T 1qtn_A 128 SQF 130 (164)
T ss_dssp GGG
T ss_pred HHh
Confidence 433
No 479
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=46.07 E-value=19 Score=33.44 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCchhHHhH
Q 045757 121 GKDVVIAAETGSGKTHSYL 139 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~~ 139 (548)
+.-+.+.+++|+|||....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456788999999997643
No 480
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=45.79 E-value=41 Score=35.32 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-----cccc-C-CCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-----AARG-I-DIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-----~~~G-i-Dip~v 492 (548)
++++||.++++..+....+.+++. ++.+..++|+.+...+... ...+.+|+|+|.- +..| + ++.++
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ---IVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHH---HHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHH---hccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 379999999999999888888776 7889999999864433222 2246799999932 2233 3 56678
Q ss_pred CEEEEec
Q 045757 493 SHVIQAD 499 (548)
Q Consensus 493 ~~VI~~~ 499 (548)
++||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8888644
No 481
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=45.61 E-value=49 Score=35.61 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=52.6
Q ss_pred CCcEEEEeCChhHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c-----c-------cc
Q 045757 424 TSRTMVFANTVDAVYAVTKILKT----AGIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A-----A-------RG 486 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~-----~-------~G 486 (548)
+..++|.++|+..|.+.++++.. .|+.+.++.|+++.++|.... ++.|+++|.. + . ..
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y-----~~DIvygTpgrlgfDyLrD~m~~~~~~ 226 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY-----NADITYGTNNEFGFDYLRDNMAHSLDD 226 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----HSSEEEEEHHHHHHHHHHHTTCSSGGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc-----CCCEEEECchHhhHHHHHhhhhccHhh
Confidence 56899999999999988888765 489999999999987766443 4789999942 1 1 13
Q ss_pred CCCCCCCEEEE
Q 045757 487 IDIPNVSHVIQ 497 (548)
Q Consensus 487 iDip~v~~VI~ 497 (548)
++...++++|.
T Consensus 227 l~lr~l~~lIV 237 (922)
T 1nkt_A 227 LVQRGHHYAIV 237 (922)
T ss_dssp CCCCCCCEEEE
T ss_pred hccCCCCEEEE
Confidence 56667777774
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=45.59 E-value=10 Score=35.55 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=17.2
Q ss_pred cCCCcEEEEccCCCchhHHhHHH
Q 045757 119 LSGKDVVIAAETGSGKTHSYLVP 141 (548)
Q Consensus 119 ~~g~~~ii~a~TGsGKTl~~~l~ 141 (548)
..|..+++.+|+|+|||..+...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 34556799999999999764433
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=45.51 E-value=8.6 Score=34.75 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56778899999999995
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=45.34 E-value=8.8 Score=35.29 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.+|+|+|||.
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999995
No 485
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.10 E-value=12 Score=32.97 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999754
No 486
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.03 E-value=62 Score=32.87 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=50.9
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCCcc----------CCCCcEEEeChHHHHhhcChhhhh
Q 045757 165 PRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQGWP----------IGKPDVIVSTPAALLNNIDPKRRR 234 (548)
Q Consensus 165 ~~~~~Lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~Ilv~Tp~~l~~~l~~~~~~ 234 (548)
.+.++||.|+++.-+..+.+.+.+.... + +.+..++|+.... .+..+|+|+|.- +.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~---~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~----- 403 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK-D---LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA----- 403 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT-T---SCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT-----
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC-C---ceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----hh-----
Confidence 3568999999999999999999877532 2 6788888875532 467899999952 11
Q ss_pred ccccccCeeEEEEec
Q 045757 235 RMEFVRGVKYVVFDE 249 (548)
Q Consensus 235 ~~~~~~~~~~vV~DE 249 (548)
.-.++.++++||.-.
T Consensus 404 ~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 404 RGMDFPNVHEVLQIG 418 (563)
T ss_dssp SSCCCTTCCEEEEES
T ss_pred cCCCcccCCEEEEEC
Confidence 123466788877544
No 487
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.96 E-value=60 Score=30.80 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=48.0
Q ss_pred CCCCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCcc------cccCCCCC
Q 045757 422 AETSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDAA------ARGIDIPN 491 (548)
Q Consensus 422 ~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~~------~~GiDip~ 491 (548)
..+.++||.++++..+..+++.+++. ++.+...+++..... ...+.+|+|+|.-. ...+++.+
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------KQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------SCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------ccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 45679999999999999999998874 455666666532111 11356899999322 23456777
Q ss_pred CCEEEEec
Q 045757 492 VSHVIQAD 499 (548)
Q Consensus 492 v~~VI~~~ 499 (548)
+++||.-.
T Consensus 146 ~~~iIiDE 153 (395)
T 3pey_A 146 IKIFVLDE 153 (395)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88877543
No 488
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=44.82 E-value=10 Score=34.60 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=15.0
Q ss_pred CCCcEEEEccCCCchhH
Q 045757 120 SGKDVVIAAETGSGKTH 136 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl 136 (548)
.|.-+.+.||+|+|||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788899999999995
No 489
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=44.79 E-value=12 Score=32.03 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.5
Q ss_pred cEEEEccCCCchhHHh
Q 045757 123 DVVIAAETGSGKTHSY 138 (548)
Q Consensus 123 ~~ii~a~TGsGKTl~~ 138 (548)
.+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999764
No 490
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=44.73 E-value=6.3 Score=35.60 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 491
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=44.72 E-value=23 Score=31.30 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=16.2
Q ss_pred cEEEEc-cCCCchhHHhHHHHHHHHHHH
Q 045757 123 DVVIAA-ETGSGKTHSYLVPLIEKLCTA 149 (548)
Q Consensus 123 ~~ii~a-~TGsGKTl~~~l~il~~~~~~ 149 (548)
.++|.+ .||+|||++. +.++..+.+.
T Consensus 6 ~i~Itgt~t~vGKT~vt-~~L~~~l~~~ 32 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYIS-TKLIEVCEHQ 32 (228)
T ss_dssp EEEEEESSSSSCHHHHH-HHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHHHC
Confidence 455555 4899999874 3445555443
No 492
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=44.10 E-value=9.8 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHHh
Q 045757 122 KDVVIAAETGSGKTHSY 138 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~~ 138 (548)
..+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999754
No 493
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=43.95 E-value=14 Score=33.68 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.4
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.+|+|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999963
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=43.93 E-value=10 Score=32.92 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.3
Q ss_pred CcEEEEccCCCchhHH
Q 045757 122 KDVVIAAETGSGKTHS 137 (548)
Q Consensus 122 ~~~ii~a~TGsGKTl~ 137 (548)
.-.+|.||+|+|||..
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3468889999999975
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=43.74 E-value=9 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|+-+.+.+|+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 578899999999999963
No 496
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=43.48 E-value=13 Score=38.47 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.1
Q ss_pred ccCCCcEEEEccCCCchhHH
Q 045757 118 VLSGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 118 i~~g~~~ii~a~TGsGKTl~ 137 (548)
+..|..+++.+|+|+|||..
T Consensus 57 i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHH
Confidence 34678999999999999965
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.44 E-value=9.8 Score=40.75 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCchhHHh
Q 045757 121 GKDVVIAAETGSGKTHSY 138 (548)
Q Consensus 121 g~~~ii~a~TGsGKTl~~ 138 (548)
..++++.||+|+|||..+
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999764
No 498
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=43.27 E-value=24 Score=32.20 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=42.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHhhc
Q 045757 423 ETSRTMVFANTVDAVYAVTKILKTAGIECYCYHKDLSLEERAKTLVNFQ 471 (548)
Q Consensus 423 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 471 (548)
+.+-+|||.+....++.+.+.|+++|+.|.. +.+++.++-.+.++.|.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~ 89 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFA 89 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHH
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHH
Confidence 4567999999999999999999999999765 56899999999999996
No 499
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.12 E-value=14 Score=33.24 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 045757 120 SGKDVVIAAETGSGKTHS 137 (548)
Q Consensus 120 ~g~~~ii~a~TGsGKTl~ 137 (548)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999963
No 500
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=42.84 E-value=34 Score=37.59 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCcEEEEeCChhHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHhhccCCcEEEEeCc-c----ccc-C-CCCCC
Q 045757 424 TSRTMVFANTVDAVYAVTKILKTA----GIECYCYHKDLSLEERAKTLVNFQEKGGVFVCTDA-A----ARG-I-DIPNV 492 (548)
Q Consensus 424 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~vLv~T~~-~----~~G-i-Dip~v 492 (548)
++++||.++++..+...++.+++. ++.+..+||+.+...+... +..+.+|+|+|.- + ..+ + .+.++
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~---~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~ 372 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEK---VIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHH---HHHHCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHH---hccCCCEEEecHHHHHHHHHcCccccccCC
Confidence 678999999999988888877765 8999999999865543222 2245789999932 2 222 2 45567
Q ss_pred CEEEEe
Q 045757 493 SHVIQA 498 (548)
Q Consensus 493 ~~VI~~ 498 (548)
++||.-
T Consensus 373 ~liViD 378 (936)
T 4a2w_A 373 TLMIFD 378 (936)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887754
Done!