Query 045760
Match_columns 700
No_of_seqs 275 out of 1768
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00272 heat shock protein 83 100.0 3E-173 6E-178 1481.9 67.5 696 4-700 1-701 (701)
2 KOG0020 Endoplasmic reticulum 100.0 1E-173 2E-178 1369.1 41.5 673 3-679 70-755 (785)
3 PTZ00130 heat shock protein 90 100.0 2E-170 4E-175 1456.8 65.6 668 5-678 65-766 (814)
4 COG0326 HtpG Molecular chapero 100.0 2E-164 3E-169 1365.7 59.9 613 5-668 4-622 (623)
5 KOG0019 Molecular chaperone (H 100.0 8E-165 2E-169 1340.3 51.0 616 5-674 34-651 (656)
6 PRK05218 heat shock protein 90 100.0 9E-144 2E-148 1237.5 64.1 606 4-669 2-613 (613)
7 PF00183 HSP90: Hsp90 protein; 100.0 6E-134 1E-138 1134.5 47.3 516 185-700 1-531 (531)
8 PRK14083 HSP90 family protein; 100.0 3E-132 6E-137 1132.5 59.1 573 7-671 2-596 (601)
9 PF13589 HATPase_c_3: Histidin 99.7 1.2E-16 2.6E-21 151.6 8.7 102 26-152 1-105 (137)
10 TIGR00585 mutl DNA mismatch re 99.5 1.9E-13 4.1E-18 147.0 13.6 166 18-210 11-192 (312)
11 COG0323 MutL DNA mismatch repa 99.5 4.7E-14 1E-18 164.0 9.1 153 25-204 20-184 (638)
12 PRK00095 mutL DNA mismatch rep 99.4 4.3E-12 9.3E-17 148.0 20.3 155 23-204 17-182 (617)
13 COG1389 DNA topoisomerase VI, 99.3 5.4E-12 1.2E-16 136.7 11.5 159 26-205 30-205 (538)
14 PRK04184 DNA topoisomerase VI 99.2 1.4E-10 2.9E-15 131.7 14.3 158 26-205 30-205 (535)
15 TIGR01052 top6b DNA topoisomer 99.0 1.5E-09 3.2E-14 122.1 13.7 151 31-204 31-195 (488)
16 PRK14868 DNA topoisomerase VI 99.0 1.5E-09 3.3E-14 125.8 12.3 150 31-205 49-211 (795)
17 KOG1979 DNA mismatch repair pr 98.7 1.1E-07 2.4E-12 106.0 11.7 152 24-204 23-188 (694)
18 TIGR01055 parE_Gneg DNA topois 98.6 7.9E-08 1.7E-12 112.2 9.7 159 28-211 30-203 (625)
19 PRK14867 DNA topoisomerase VI 98.6 1.8E-07 4E-12 108.4 11.6 153 31-205 39-202 (659)
20 PRK05559 DNA topoisomerase IV 98.6 1.2E-07 2.5E-12 111.1 9.5 158 29-210 38-209 (631)
21 smart00433 TOP2c Topoisomerase 98.6 8.3E-08 1.8E-12 111.7 7.6 154 32-210 5-173 (594)
22 KOG1978 DNA mismatch repair pr 98.5 1.8E-07 3.8E-12 106.7 8.6 159 19-203 11-181 (672)
23 PRK05644 gyrB DNA gyrase subun 98.5 2.8E-07 6E-12 108.1 9.3 156 30-210 39-207 (638)
24 TIGR01059 gyrB DNA gyrase, B s 98.5 3.5E-07 7.5E-12 107.8 8.9 156 30-210 32-200 (654)
25 PF02518 HATPase_c: Histidine 98.5 3.8E-07 8.3E-12 82.4 7.2 81 31-136 8-88 (111)
26 PRK14939 gyrB DNA gyrase subun 98.3 1.3E-06 2.8E-11 103.4 9.1 151 30-211 39-208 (756)
27 KOG1977 DNA mismatch repair pr 98.0 3.4E-06 7.4E-11 95.8 2.7 126 28-178 21-149 (1142)
28 PRK10755 sensor protein BasS/P 97.4 0.00034 7.3E-09 75.9 7.1 100 31-180 250-349 (356)
29 cd00075 HATPase_c Histidine ki 97.4 0.00086 1.9E-08 57.3 8.2 85 31-140 3-91 (103)
30 TIGR01058 parE_Gpos DNA topois 97.3 0.00065 1.4E-08 79.9 9.3 159 30-211 36-206 (637)
31 smart00387 HATPase_c Histidine 97.3 0.001 2.2E-08 57.8 7.9 81 31-136 8-88 (111)
32 TIGR02916 PEP_his_kin putative 97.2 0.00066 1.4E-08 80.8 7.3 74 32-134 583-656 (679)
33 PRK10604 sensor protein RstB; 97.2 0.0007 1.5E-08 76.0 7.0 77 32-134 323-399 (433)
34 PRK10549 signal transduction h 97.0 0.0014 3E-08 73.5 7.7 79 32-134 356-434 (466)
35 PRK11006 phoR phosphate regulo 97.0 0.0014 3E-08 73.3 7.7 80 31-134 320-399 (430)
36 TIGR02938 nifL_nitrog nitrogen 97.0 0.0018 3.9E-08 72.2 8.1 79 31-134 390-470 (494)
37 TIGR01386 cztS_silS_copS heavy 97.0 0.0017 3.7E-08 72.2 7.7 100 32-179 357-456 (457)
38 PRK09470 cpxA two-component se 97.0 0.0016 3.5E-08 72.6 7.5 75 32-132 357-431 (461)
39 PRK11100 sensory histidine kin 97.0 0.0024 5.3E-08 71.2 8.9 101 32-180 372-472 (475)
40 PRK11086 sensory histidine kin 96.9 0.0028 6E-08 72.4 8.5 76 31-134 436-511 (542)
41 PRK10815 sensor protein PhoQ; 96.8 0.0023 5E-08 73.3 7.3 97 32-181 382-478 (485)
42 PRK10364 sensor protein ZraS; 96.8 0.0028 6.1E-08 71.4 7.9 73 32-134 352-424 (457)
43 TIGR02966 phoR_proteo phosphat 96.8 0.0027 5.9E-08 66.8 7.0 79 32-134 233-311 (333)
44 PRK09303 adaptive-response sen 96.8 0.0031 6.7E-08 69.7 7.6 75 32-134 276-353 (380)
45 PRK15347 two component system 96.7 0.0023 5.1E-08 78.2 7.0 74 32-134 517-590 (921)
46 PHA02569 39 DNA topoisomerase 96.7 0.005 1.1E-07 72.2 8.9 159 31-212 48-223 (602)
47 PRK11466 hybrid sensory histid 96.7 0.0031 6.8E-08 77.2 7.6 73 32-133 565-637 (914)
48 PRK15053 dpiB sensor histidine 96.6 0.0052 1.1E-07 70.7 8.6 78 32-134 436-515 (545)
49 TIGR02956 TMAO_torS TMAO reduc 96.6 0.0048 1E-07 76.0 8.5 75 32-133 583-658 (968)
50 PLN03237 DNA topoisomerase 2; 96.6 0.011 2.4E-07 74.3 11.3 161 31-213 80-260 (1465)
51 PRK09467 envZ osmolarity senso 96.5 0.0052 1.1E-07 68.4 7.3 75 32-134 335-409 (435)
52 PRK11360 sensory histidine kin 96.5 0.0055 1.2E-07 70.1 7.6 50 32-95 504-554 (607)
53 PLN03128 DNA topoisomerase 2; 96.5 0.012 2.6E-07 73.1 10.5 128 31-180 55-195 (1135)
54 COG0187 GyrB Type IIA topoisom 96.4 0.013 2.8E-07 67.7 9.6 162 29-213 37-211 (635)
55 PTZ00108 DNA topoisomerase 2-l 96.4 0.016 3.4E-07 73.1 11.0 163 31-212 60-241 (1388)
56 PRK11091 aerobic respiration c 96.3 0.01 2.2E-07 71.7 8.6 86 32-141 402-492 (779)
57 TIGR03785 marine_sort_HK prote 96.3 0.0093 2E-07 71.5 8.2 79 32-134 601-679 (703)
58 PRK10337 sensor protein QseC; 96.2 0.01 2.3E-07 66.3 7.4 72 32-134 356-427 (449)
59 PRK13837 two-component VirA-li 96.1 0.012 2.5E-07 71.9 7.8 81 32-142 564-663 (828)
60 COG3290 CitA Signal transducti 96.1 0.014 3.1E-07 66.3 7.8 74 31-132 430-505 (537)
61 PRK11107 hybrid sensory histid 96.0 0.014 3E-07 71.4 7.8 86 32-142 412-506 (919)
62 PRK10490 sensor protein KdpD; 95.9 0.016 3.4E-07 71.4 7.8 77 32-134 782-858 (895)
63 PRK09835 sensor kinase CusS; P 95.9 0.019 4.1E-07 64.6 7.8 77 32-132 379-455 (482)
64 PRK10618 phosphotransfer inter 95.9 0.02 4.3E-07 70.4 8.2 84 32-141 569-659 (894)
65 PTZ00109 DNA gyrase subunit b; 95.9 0.016 3.5E-07 69.8 7.1 162 31-211 132-356 (903)
66 PRK10841 hybrid sensory kinase 95.8 0.018 3.9E-07 71.2 7.7 77 32-133 566-642 (924)
67 TIGR01925 spIIAB anti-sigma F 95.6 0.035 7.5E-07 52.0 7.0 46 31-87 42-87 (137)
68 PRK04069 serine-protein kinase 95.5 0.016 3.5E-07 56.5 4.5 88 30-140 44-131 (161)
69 PRK03660 anti-sigma F factor; 95.4 0.056 1.2E-06 51.1 7.8 48 30-88 41-88 (146)
70 PRK10547 chemotaxis protein Ch 95.4 0.055 1.2E-06 64.4 9.1 53 33-93 390-448 (670)
71 PRK10600 nitrate/nitrite senso 95.2 0.027 5.8E-07 65.6 6.0 43 32-89 473-515 (569)
72 PRK09959 hybrid sensory histid 95.1 0.044 9.5E-07 69.4 7.8 76 32-134 832-912 (1197)
73 PRK11073 glnL nitrogen regulat 95.0 0.057 1.2E-06 58.1 7.4 49 31-94 240-300 (348)
74 PRK11644 sensory histidine kin 95.0 0.029 6.3E-07 64.5 5.3 43 32-89 414-456 (495)
75 COG4191 Signal transduction hi 94.8 0.039 8.6E-07 63.3 5.6 54 32-97 501-554 (603)
76 PRK13557 histidine kinase; Pro 94.7 0.06 1.3E-06 61.2 7.0 53 76-142 326-382 (540)
77 COG0642 BaeS Signal transducti 94.5 0.049 1.1E-06 56.3 5.2 49 31-94 231-279 (336)
78 TIGR01924 rsbW_low_gc serine-p 94.4 0.065 1.4E-06 52.3 5.4 88 30-140 44-131 (159)
79 PF13581 HATPase_c_2: Histidin 94.2 0.14 3E-06 47.1 6.8 81 30-138 33-113 (125)
80 KOG0787 Dehydrogenase kinase [ 93.7 0.17 3.8E-06 55.2 7.4 124 30-186 262-385 (414)
81 KOG0019 Molecular chaperone (H 93.7 0.0055 1.2E-07 69.9 -4.2 240 388-639 357-601 (656)
82 COG0643 CheA Chemotaxis protei 93.5 0.09 2E-06 62.9 5.2 129 32-180 436-572 (716)
83 COG3920 Signal transduction hi 91.0 0.3 6.6E-06 50.3 4.9 47 32-89 126-174 (221)
84 COG4251 Bacteriophytochrome (l 91.0 0.47 1E-05 55.1 6.7 72 64-147 657-734 (750)
85 COG5000 NtrY Signal transducti 90.6 0.38 8.2E-06 55.7 5.5 56 32-96 604-661 (712)
86 PRK13560 hypothetical protein; 88.9 0.42 9.1E-06 57.3 4.5 45 32-89 715-762 (807)
87 COG2172 RsbW Anti-sigma regula 87.8 1.8 4E-05 41.8 7.3 84 30-142 42-128 (146)
88 COG4585 Signal transduction hi 87.1 0.44 9.6E-06 52.4 3.0 46 31-91 282-327 (365)
89 COG3850 NarQ Signal transducti 85.7 0.85 1.9E-05 52.2 4.3 43 32-89 485-527 (574)
90 COG2205 KdpD Osmosensitive K+ 84.9 3.5 7.5E-05 49.7 8.9 56 32-101 779-834 (890)
91 COG4192 Signal transduction hi 81.9 2.2 4.8E-05 48.1 5.3 54 32-101 568-624 (673)
92 COG2972 Predicted signal trans 78.4 4.7 0.0001 46.0 6.9 55 26-92 348-404 (456)
93 PRK10935 nitrate/nitrite senso 76.6 2.2 4.8E-05 49.1 3.6 42 32-88 475-517 (565)
94 PRK13559 hypothetical protein; 76.0 2.3 5.1E-05 46.0 3.4 44 32-88 271-318 (361)
95 COG5002 VicK Signal transducti 74.2 5 0.00011 44.0 5.1 84 64-180 362-447 (459)
96 KOG1845 MORC family ATPases [C 73.3 3.1 6.8E-05 50.0 3.7 94 32-142 150-246 (775)
97 KOG0355 DNA topoisomerase type 72.6 5 0.00011 48.2 5.1 123 32-178 57-192 (842)
98 KOG1845 MORC family ATPases [C 55.0 9.6 0.00021 46.0 3.1 52 77-143 2-54 (775)
99 PF12588 PSDC: Phophatidylseri 48.7 35 0.00075 32.9 5.3 58 612-672 2-64 (141)
100 COG4564 Signal transduction hi 44.0 26 0.00057 38.3 4.0 53 27-92 354-408 (459)
101 PF06112 Herpes_capsid: Gammah 42.1 32 0.0007 33.2 3.9 22 605-626 15-36 (147)
102 PF14501 HATPase_c_5: GHKL dom 42.0 38 0.00082 29.9 4.2 17 119-135 63-79 (100)
103 COG2865 Predicted transcriptio 40.6 37 0.0008 39.0 4.7 87 25-133 267-357 (467)
104 COG3851 UhpB Signal transducti 37.7 34 0.00075 37.9 3.7 25 63-87 430-454 (497)
105 PRK14723 flhF flagellar biosyn 37.3 2.8E+02 0.0061 34.1 11.7 128 433-562 186-332 (767)
106 smart00481 POLIIIAc DNA polyme 29.4 99 0.0021 25.1 4.5 56 436-493 3-60 (67)
107 PF04122 CW_binding_2: Putativ 28.3 2E+02 0.0043 24.9 6.5 57 459-518 24-81 (92)
108 COG3852 NtrB Signal transducti 27.4 84 0.0018 34.3 4.5 56 32-92 245-305 (363)
109 TIGR00032 argG argininosuccina 26.1 1E+02 0.0022 34.8 5.1 34 63-99 212-245 (394)
110 PF07429 Glyco_transf_56: 4-al 25.1 42 0.00092 37.1 1.9 46 475-524 296-341 (360)
111 PRK13820 argininosuccinate syn 24.6 1.1E+02 0.0023 34.6 5.0 49 63-136 212-260 (394)
112 PRK04527 argininosuccinate syn 23.3 1.1E+02 0.0025 34.5 4.8 49 63-136 215-263 (400)
113 PRK00509 argininosuccinate syn 23.2 1.1E+02 0.0025 34.5 4.8 49 63-136 215-263 (399)
114 COG1578 Uncharacterized conser 22.4 6.6E+02 0.014 27.0 9.9 55 381-435 74-133 (285)
115 COG5381 Uncharacterized protei 21.7 4.3E+02 0.0094 25.8 7.6 81 32-127 67-148 (184)
116 PLN00200 argininosuccinate syn 21.4 1.4E+02 0.0029 33.9 5.0 42 63-127 219-260 (404)
No 1
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2.8e-173 Score=1481.93 Aligned_cols=696 Identities=66% Similarity=1.065 Sum_probs=609.0
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 045760 4 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSG 83 (700)
Q Consensus 4 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 83 (700)
|+|+|+||||+++||+||+|+|||++++|||||||||+|||+++||++++++.+.+..+++.|+|..|.++++|+|.|||
T Consensus 1 ~~e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnG 80 (701)
T PTZ00272 1 MTETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNG 80 (701)
T ss_pred CCceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECC
Confidence 77999999999999999999999999999999999999999999999999998777677889999999888999999999
Q ss_pred CCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeC
Q 045760 84 IGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRD 163 (700)
Q Consensus 84 iGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~ 163 (700)
+|||++||.++||+||+||++.|+++++.+.+..+|||||||||||||||++|+|+||+.++.+|.|+|+|+|.|+|.+.
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~ 160 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITST 160 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeC
Confidence 99999999999999999999999988865556789999999999999999999999998767899999999999999986
Q ss_pred CCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhh----hhhccCCccccc
Q 045760 164 TSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEE----KKDEEGKVEDVD 239 (700)
Q Consensus 164 ~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 239 (700)
+. ....+||+|+|||+++..+|++.++|+++|++||+||+|||+++...+...++++++++.. ++++++.+++.+
T Consensus 161 ~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (701)
T PTZ00272 161 PE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVK 239 (701)
T ss_pred CC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccccccccc
Confidence 43 3458999999999999999999999999999999999999999865443333322211100 001111122221
Q ss_pred hHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCC
Q 045760 240 EEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRA 319 (700)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 319 (700)
++++.++++.+++++++++|++||+++|||+|+|++||+++|++|||+++++|++||+|+||++||+++|+||||||+++
T Consensus 240 ~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~ 319 (701)
T PTZ00272 240 EGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRA 319 (701)
T ss_pred ccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCCCC
Confidence 22222234456666777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045760 320 PFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEI 399 (700)
Q Consensus 320 p~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l 399 (700)
|+++|+.+..+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++
T Consensus 320 ~~~~~~~~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~~l 399 (701)
T PTZ00272 320 PFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEV 399 (701)
T ss_pred ccchhhhhhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998754357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChh
Q 045760 400 AENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPF 479 (700)
Q Consensus 400 ~~d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~ 479 (700)
|+++++|.+||++||.+||+|+++|..||++|++||||+||.++++++||++|++|||++|+.|||++|+|++++++|||
T Consensus 400 a~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~ 479 (701)
T PTZ00272 400 AENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPF 479 (701)
T ss_pred hhCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHHhChH
Confidence 99999999999999999999999999999999999999999866789999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEE
Q 045760 480 LEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVV 559 (700)
Q Consensus 480 le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~ 559 (700)
+|.|++||||||||+||||||||++|++|+|++|+||+++++++++.+++++..+..++++++|++|||++|+++|.+|+
T Consensus 480 lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~kV~~Vk 559 (701)
T PTZ00272 480 IEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVI 559 (701)
T ss_pred HHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHHhCCcccEEE
Confidence 99999999999999999999999999999999999999999987643322222233456799999999999999999999
Q ss_pred EeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHHH
Q 045760 560 VSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLF 639 (700)
Q Consensus 560 vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~Ly 639 (700)
+|+||++||||||++++|+|++|+|||++|++++.++..++..++||||||+||||++|+++...+++++.++++|+|||
T Consensus 560 vS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~la~~Ly 639 (701)
T PTZ00272 560 VSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLF 639 (701)
T ss_pred EeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999976432233345689999999999999999887655555667999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCCCc-ccCCCCccCC
Q 045760 640 ETALLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADADMPPLEDAADD-AEGSKMEEVD 700 (700)
Q Consensus 640 d~AlL~~G~~i~dp~~f~~ri~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 700 (700)
|+|+|++|+.++||+.|++|+|+||..+|+++.++....+..++..+++++ .+++.+++||
T Consensus 640 D~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 701 (701)
T PTZ00272 640 DTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAEAPVAETAPAEVTAGTSSMEQVD 701 (701)
T ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCccccccccccccccCCccccccccccccCC
Confidence 999999999999999999999999987899997755432222223344443 2456777775
No 2
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-173 Score=1369.11 Aligned_cols=673 Identities=55% Similarity=0.929 Sum_probs=622.5
Q ss_pred CcccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeC
Q 045760 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDS 82 (700)
Q Consensus 3 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 82 (700)
|-+|+|+||+++.|||.||+|+||+|++|||||||+||+||++|+|+++|+|+..++..+++.|+|..|+.++.|.|.|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCC-----ccccccccchhheeeecceEEEEEecCCCceEEEEEccCce
Q 045760 83 GIGMTKADLVNNLGTIARSGTKEFMEALAAGADV-----SMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS 157 (700)
Q Consensus 83 GiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~-----~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~ 157 (700)
|+|||++||+++|||||+||+.+|++++++.++. .+||||||||||+|+|||+|+|+|+++++.+|+|+|++. .
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan-~ 228 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDAN-S 228 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCc-c
Confidence 9999999999999999999999999999875433 799999999999999999999999999999999999875 9
Q ss_pred EEEEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhh-ccCCcc
Q 045760 158 FTVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKD-EEGKVE 236 (700)
Q Consensus 158 ~~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 236 (700)
|+|..+|++++.+|||+|+|+|++++.+||++++|+++|++||+||+|||++|..+++..+++-+++++.+.+ .+.+..
T Consensus 229 FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed~ea 308 (785)
T KOG0020|consen 229 FSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTEDKEA 308 (785)
T ss_pred eeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999999999998887777664443322211 111111
Q ss_pred ccchHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEec
Q 045760 237 DVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVP 316 (700)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP 316 (700)
.+++++ .+++++|++.+++|+|+.+|+.+|||+|+|++|+++||..||+++++++.+|++|+||.+||.++|++|||||
T Consensus 309 ~vEEee-~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyVP 387 (785)
T KOG0020|consen 309 AVEEEE-EEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYVP 387 (785)
T ss_pred hhhhhh-hccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEeC
Confidence 122222 2236788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccC--CCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHH
Q 045760 317 KRAPFDLFDT--RKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIE 394 (700)
Q Consensus 317 ~~~p~~~~~~--~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~ 394 (700)
+.+|.++|+. .+...+|+||||||||+|++.+++|.||+||||||||+|||||||||+||++++|+.|+++|++|+++
T Consensus 388 ~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LD 467 (785)
T KOG0020|consen 388 KKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLD 467 (785)
T ss_pred CCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999974 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCHHHHHH-HHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHH
Q 045760 395 LFQEIAENKEDYNK-FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKA 473 (700)
Q Consensus 395 ~l~~l~~d~e~y~~-f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~ 473 (700)
||++++. ++|.. ||++||.+||+|+++|+.||..|++||||.||+++.+.+||++|++|||+.|+.|||++|.|+.+
T Consensus 468 mikKia~--e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e 545 (785)
T KOG0020|consen 468 MIKKIAG--EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKE 545 (785)
T ss_pred HHHHhhc--cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhh
Confidence 9999986 46776 99999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHH-HhC
Q 045760 474 VENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKD-VLG 552 (700)
Q Consensus 474 ~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~-~L~ 552 (700)
++.|||+|.+.+||||||||++|+||+|||.|.+|+||+|++|.++++++++.+..++..+..+++|++|+.|+|. +|.
T Consensus 546 ~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alk 625 (785)
T KOG0020|consen 546 VEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALK 625 (785)
T ss_pred hccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999998777777778888999999999998 578
Q ss_pred CcccEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcc---cCcccccCCCCceEEeCCCChHHHHHHHhhccCCCch
Q 045760 553 DKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDK 629 (700)
Q Consensus 553 ~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~---~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~ 629 (700)
++|.+++||+||++|||++|++.+|||.+|+|||++|+.+ +.....|+.+|++|||||+||||+.|+.+...|+.|+
T Consensus 626 d~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~ 705 (785)
T KOG0020|consen 626 DKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDE 705 (785)
T ss_pred HHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999999999999876 3333356789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccCCCcccCCCCC
Q 045760 630 SVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA 679 (700)
Q Consensus 630 ~~~~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~~~l~~~~~~~~~~~ 679 (700)
.++++|.+||.+|.|.+||.+.|+..|+.||+++|+++|+|+.++.++++
T Consensus 706 t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e 755 (785)
T KOG0020|consen 706 TVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEE 755 (785)
T ss_pred hHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccc
Confidence 99999999999999999999999999999999999999999998877644
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.9e-170 Score=1456.78 Aligned_cols=668 Identities=43% Similarity=0.737 Sum_probs=593.4
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.++|+||+|+++||+||+++|||+++||||||||||+|||+|+||++++++.+.+...++.|+|..|.++++|+|+||||
T Consensus 65 ~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 65 IEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred cceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999988777788999999999999999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhc-CCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAA-GADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRD 163 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~-~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~ 163 (700)
|||++||.++|||||+||++.|+++++. +.+..+||||||||||||||||+|+|+|++.++.+|+|+|+|+|.|+|.+.
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998875 345789999999999999999999999998778899999999999999997
Q ss_pred CCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhh-h--hccCCccccch
Q 045760 164 TSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEK-K--DEEGKVEDVDE 240 (700)
Q Consensus 164 ~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 240 (700)
+++....+||+|+|||+++..+|++.++|+++|++||+||+|||++++.+++.+++++++..+.+ + ++++++++.+
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~- 303 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVKVEETD- 303 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccccccccc-
Confidence 65455789999999999999999999999999999999999999998654333333321110000 0 0111111111
Q ss_pred HHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCC
Q 045760 241 EKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAP 320 (700)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p 320 (700)
+.+++.+++++.+.+|++||+.+|||+|+|++||+|+|.+|||+++++|++||+|+||++||+++|+||||||+++|
T Consensus 304 ---~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~~ap 380 (814)
T PTZ00130 304 ---DPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSRAP 380 (814)
T ss_pred ---cccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecCCCc
Confidence 11234566666677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 045760 321 FDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIA 400 (700)
Q Consensus 321 ~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~ 400 (700)
+.+|+....+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+++
T Consensus 381 ~~~~~~~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L~~l~ 460 (814)
T PTZ00130 381 SINDHLFTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTLY 460 (814)
T ss_pred cchhhhhhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775223478999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred h------------------------------CHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHH
Q 045760 401 E------------------------------NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLK 450 (700)
Q Consensus 401 ~------------------------------d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~ 450 (700)
+ +|++|.+||++||.+||+||++|..|+++|++||||+||.+ ++++||+
T Consensus 461 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~~~SL~ 539 (814)
T PTZ00130 461 KEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PKSISLD 539 (814)
T ss_pred hhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CCccCHH
Confidence 5 47899999999999999999999999999999999999986 4689999
Q ss_pred HHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHH
Q 045760 451 DYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEK 530 (700)
Q Consensus 451 eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k 530 (700)
+||+||+++|+.|||++|++++++++|||+|.|+++|+|||||++||||||+++|.+|+|++|++|++++++++..++++
T Consensus 540 eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~~~e~ 619 (814)
T PTZ00130 540 TYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEK 619 (814)
T ss_pred HHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876433333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCC
Q 045760 531 KKKETLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINP 610 (700)
Q Consensus 531 ~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp 610 (700)
+..+..++++++|++|+|++|+++|.+|++|+||++||||||++++|+|++|+|||++|++. .++..++..++||||||
T Consensus 620 ~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~-~~~~~~~~~k~iLEINp 698 (814)
T PTZ00130 620 KKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNN-SDQIKAMSGQKILEINP 698 (814)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhcc-ccccccccCCeEEEECC
Confidence 33333456799999999999999999999999999999999999999999999999998642 22223556899999999
Q ss_pred CChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccCCCcccCCCC
Q 045760 611 ENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD 678 (700)
Q Consensus 611 ~HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~~~l~~~~~~~~~~ 678 (700)
+||||++|+.+...+++++.++++|+||||+|+|++|+.++||+.|++|+|+||.++|++++.+.+++
T Consensus 699 ~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 699 DHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred CCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99999999876544555566999999999999999999999999999999999999999998766664
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-164 Score=1365.65 Aligned_cols=613 Identities=51% Similarity=0.824 Sum_probs=571.3
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|++.||+|+++||++|+||||||++||||||||||+|||+|+||.++++|......++++|+|.+|++++||+|.||||
T Consensus 4 ~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGI 83 (623)
T COG0326 4 QETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGI 83 (623)
T ss_pred hhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCC
Confidence 57899999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC-CCCccccccccchhheeeecceEEEEEecCC-CceEEEEEccCceEEEEe
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG-ADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQYIWESQAGGSFTVTR 162 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~-~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~~~w~s~~~~~~~i~~ 162 (700)
|||++|+.++|||||+||+++|++.+.++ .+.++||||||||||||||||+|+|+|++.+ +.+++|+|+|+|+|+|++
T Consensus 84 GMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~ 163 (623)
T COG0326 84 GMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVED 163 (623)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEee
Confidence 99999999999999999999999998765 4788999999999999999999999999864 678899999999999999
Q ss_pred CCCCCCCC-CceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccchH
Q 045760 163 DTSGELLG-RGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVDEE 241 (700)
Q Consensus 163 ~~~~~~~~-~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (700)
.+ ... +||+|+|||+++..+|++.|+|+++|++||.||++||++.++...++
T Consensus 164 ~~---~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~------------------------ 216 (623)
T COG0326 164 ID---KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDE------------------------ 216 (623)
T ss_pred cc---CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccc------------------------
Confidence 64 334 69999999999999999999999999999999999999976432100
Q ss_pred HHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCC
Q 045760 242 KEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPF 321 (700)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~ 321 (700)
.+.+|+.||+++|||+|+++++++|+|.+||++++++|++||.|+|+++||.++|++|||||+++||
T Consensus 217 -------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPf 283 (623)
T COG0326 217 -------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPF 283 (623)
T ss_pred -------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCc
Confidence 0235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHh
Q 045760 322 DLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAE 401 (700)
Q Consensus 322 ~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~ 401 (700)
++|.. ..++|++||||||||||+|.+|||+||+||||||||+|||||||||+||+|++++.||+.|++||+++|.+||+
T Consensus 284 dl~~~-~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~ 362 (623)
T COG0326 284 DLFRR-DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAK 362 (623)
T ss_pred ccccc-cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99974 35799999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CHHHHHHHHHHHhhhhhcccccChhhHHHHhcccccccc-CCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChh
Q 045760 402 -NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHST-KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPF 479 (700)
Q Consensus 402 -d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss-~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~ 479 (700)
||++|.+||++||.+||+|+++|..|+++|++||||.|| .+.++++||+|||+||+++|+.|||+||++..++++||+
T Consensus 363 ~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~ 442 (623)
T COG0326 363 DDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPH 442 (623)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCch
Confidence 799999999999999999999999999999999999994 455789999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhH-HhhHHHHHHHHHHHHHHHHHHhCCcccEE
Q 045760 480 LEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDE-KKKKETLKEKFEGLCKVIKDVLGDKVEKV 558 (700)
Q Consensus 480 le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~-k~~~~~~~~e~~~L~~~lk~~L~~kV~~V 558 (700)
+|.|++||||||+|+|+||+++|..+.+|+|++|++|+++++.+...+++ +...++.+.++++|++++|++|+++|++|
T Consensus 443 lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~V 522 (623)
T COG0326 443 LELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDV 522 (623)
T ss_pred HHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999999999999999887654433 23345566679999999999999999999
Q ss_pred EEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHH
Q 045760 559 VVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLL 638 (700)
Q Consensus 559 ~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~L 638 (700)
++|+||+++|||++.+..+++.+|+|+|++|++. .+..++||||||+||||++|.... +.+.+++++++|
T Consensus 523 r~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~------~~~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~ll 592 (623)
T COG0326 523 RLSHRLTDSPACLTTDGADLSTQMERLLKAQGQE------VPESKKILEINPNHPLVKKLASLE----DEASVADLVELL 592 (623)
T ss_pred EeecccCCCcceeecCccchhHHHHHHHHhcccc------CCccccceeeCcccHHHHHHHhcc----cHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 236899999999999999999887 356699999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 045760 639 FETALLTSGFSLDDPNTFGNRIHRMLKLGL 668 (700)
Q Consensus 639 yd~AlL~~G~~i~dp~~f~~ri~~ll~~~l 668 (700)
||+|+|++|++++||+.|++|+|++|.+++
T Consensus 593 ydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 593 YDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998765
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-165 Score=1340.31 Aligned_cols=616 Identities=54% Similarity=0.895 Sum_probs=593.1
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
+|+|.|||++++||+++++++||++++||||||+||+||++|+||.++++|... .+++.|+|.+++++++|+|.|+||
T Consensus 34 ~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~DtGI 111 (656)
T KOG0019|consen 34 QETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDTGI 111 (656)
T ss_pred ccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999766 678899999999999999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHh-cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALA-AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRD 163 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~-~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~ 163 (700)
|||++||.++|||||+||+++|++.++ ++.+.++||||||||||+|+||++|+|+|++.++.++.|++.++|+|++...
T Consensus 112 GMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~~~ 191 (656)
T KOG0019|consen 112 GMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEIAEA 191 (656)
T ss_pred CcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEEeec
Confidence 999999999999999999999999999 6788899999999999999999999999999877899999999999999986
Q ss_pred CCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccchHHH
Q 045760 164 TSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVDEEKE 243 (700)
Q Consensus 164 ~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (700)
+ ...+||+|+|||+.+..+|+++.+|+++|++||.|+.|||++++
T Consensus 192 ~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~-------------------------------- 236 (656)
T KOG0019|consen 192 S---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG-------------------------------- 236 (656)
T ss_pred c---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh--------------------------------
Confidence 3 38999999999999888999999999999999999999999985
Q ss_pred HHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCc
Q 045760 244 KEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDL 323 (700)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~ 323 (700)
+.+|..+|||+|+|.+||.|+|.+|||+++++|++|+++.||++||+++|++|||||.++|+++
T Consensus 237 ----------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~l 300 (656)
T KOG0019|consen 237 ----------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSM 300 (656)
T ss_pred ----------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchh
Confidence 3499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCH
Q 045760 324 FDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENK 403 (700)
Q Consensus 324 ~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~ 403 (700)
|...+.++|++||+|||||+|+|.+++|+||+||+|||||+|||||+|||+||+++++++||+.|++|++++|.++++|+
T Consensus 301 F~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d~ 380 (656)
T KOG0019|consen 301 FDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKDA 380 (656)
T ss_pred hhhhhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 98776679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccChhhHHH-HhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHH
Q 045760 404 EDYNKFYESFSKNLKLGIHEDSTNKTK-LAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEK 482 (700)
Q Consensus 404 e~y~~f~~~~~~~lK~G~~~D~~~~~~-l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~ 482 (700)
++|++||++||.+||+||++|..|+.+ +++||||+||+++++++||++|+.||+++|+.|||++|+|+.++++|||+|.
T Consensus 381 e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~ 460 (656)
T KOG0019|consen 381 EKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEA 460 (656)
T ss_pred HHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHHH
Confidence 999999999999999999999999988 9999999999998899999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEEEee
Q 045760 483 LKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVVVSD 562 (700)
Q Consensus 483 ~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~ 562 (700)
++++|+|||||++|+||+++++|.+|+|++|++|+++++++++.++++.+.++.+.+|+.||.|||+.|+++|++|++|.
T Consensus 461 ~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs~ 540 (656)
T KOG0019|consen 461 FKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVNN 540 (656)
T ss_pred HHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEecC
Confidence 99999999999999999999999999999999999999999866555666677778999999999999999999999999
Q ss_pred cCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 045760 563 RVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETA 642 (700)
Q Consensus 563 RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~A 642 (700)
||++||||||++++||+++|+|+|+||+..+++..++|.++++|||||+||||+.|.++...|+++ .+++++.|||++|
T Consensus 541 RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetA 619 (656)
T KOG0019|consen 541 RLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETA 619 (656)
T ss_pred cccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888999999999999999999999999988777 8999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHhccCCCccc
Q 045760 643 LLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDA 674 (700)
Q Consensus 643 lL~~G~~i~dp~~f~~ri~~ll~~~l~~~~~~ 674 (700)
||++||.++||+.|+.|+|+||..+|+++.++
T Consensus 620 LlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~ 651 (656)
T KOG0019|consen 620 LISAGFSLDDPQTMVGRINRLLKSGLGRDEDE 651 (656)
T ss_pred HHHcCCCcCChHHHhhHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999998764
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=8.9e-144 Score=1237.45 Aligned_cols=606 Identities=49% Similarity=0.814 Sum_probs=559.3
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 045760 4 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSG 83 (700)
Q Consensus 4 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 83 (700)
+.|+++||+|+++||+||+++|||||.+|||||||||+|||+++|+.+++++.......+++|+|.++.++++|+|+|||
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG 81 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNG 81 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECC
Confidence 47899999999999999999999999999999999999999999999999888776677889999999888899999999
Q ss_pred CCCCHHHHHHHHhHhhhcCchhHHHHHhcC--CCCccccccccchhheeeecceEEEEEecCC--CceEEEEEccCceEE
Q 045760 84 IGMTKADLVNNLGTIARSGTKEFMEALAAG--ADVSMIGQFGVGFYSAYLVAEKVIVTAKHND--DEQYIWESQAGGSFT 159 (700)
Q Consensus 84 iGMt~~dl~~~l~tIa~S~~~~f~~~~~~~--~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~--~~~~~w~s~~~~~~~ 159 (700)
+|||++|+..+|++||+||+++|.++++.. .+..+||+|||||||+||||++|+|.||+.+ ..++.|.+.|++.|+
T Consensus 82 ~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~ 161 (613)
T PRK05218 82 IGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYT 161 (613)
T ss_pred CCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeE
Confidence 999999999999999999999999988542 3578999999999999999999999999843 569999999999999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccc
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVD 239 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (700)
+.+. ....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++++
T Consensus 162 i~~~---~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~--------------------------- 211 (613)
T PRK05218 162 IEEI---EKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE--------------------------- 211 (613)
T ss_pred EeEC---CCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc---------------------------
Confidence 9985 2348999999999999999999999999999999999999999641
Q ss_pred hHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCC
Q 045760 240 EEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRA 319 (700)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 319 (700)
+|+.+|+.+|+|+++++++++++|..||+.++++|.+||+|+|++++|++.|+|+||||..+
T Consensus 212 ------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~ 273 (613)
T PRK05218 212 ------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKA 273 (613)
T ss_pred ------------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCC
Confidence 26889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045760 320 PFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEI 399 (700)
Q Consensus 320 p~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l 399 (700)
|+++|+.. .+++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++
T Consensus 274 ~~~~~~~~-~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~l 352 (613)
T PRK05218 274 PFDLFNRD-RKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKL 352 (613)
T ss_pred ccchhhhc-ccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99988643 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcCh
Q 045760 400 AE-NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSP 478 (700)
Q Consensus 400 ~~-d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp 478 (700)
++ |+++|++||++||.+||+||++|..++++|++||||+||+ .++++||+||++||+++|+.|||++|+|++++++||
T Consensus 353 a~~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp 431 (613)
T PRK05218 353 AKNDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSP 431 (613)
T ss_pred HhhCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhCh
Confidence 97 9999999999999999999999999999999999999996 456999999999999999999999999999999999
Q ss_pred hHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCC-chhHHhhHHHHHHHHHHHHHHHHHHhCCcccE
Q 045760 479 FLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDE-SEDEKKKKETLKEKFEGLCKVIKDVLGDKVEK 557 (700)
Q Consensus 479 ~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~-~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~ 557 (700)
|+|.|+++|+|||++++|+|++|+++|.+|+|++|++|+++++++++ .++++...+..++++++|++|++++|+++|++
T Consensus 432 ~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~ 511 (613)
T PRK05218 432 HLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKD 511 (613)
T ss_pred HHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceE
Confidence 99999999999999999999999999999999999999999998765 11122222334568999999999999999999
Q ss_pred EEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHH
Q 045760 558 VVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 637 (700)
Q Consensus 558 V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~ 637 (700)
|++|.||+++||||+++++|++++|+|+|++|++ ..+..+++|||||+||||++|++.. + ++.++.++++
T Consensus 512 V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~--d--~~~~~~~~~~ 581 (613)
T PRK05218 512 VRLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA--D--EAKFKDLAEL 581 (613)
T ss_pred EEEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc--C--hHHHHHHHHH
Confidence 9999999999999999999999999999998852 1234789999999999999998743 2 2349999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q 045760 638 LFETALLTSGFSLDDPNTFGNRIHRMLKLGLS 669 (700)
Q Consensus 638 Lyd~AlL~~G~~i~dp~~f~~ri~~ll~~~l~ 669 (700)
|||+|+|++|+.++||+.|++|+++||.++++
T Consensus 582 Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 582 LYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999987653
No 7
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=6.3e-134 Score=1134.50 Aligned_cols=516 Identities=57% Similarity=0.950 Sum_probs=426.7
Q ss_pred hhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhh----c-----cCCccccchHHH--HHhhhhccce
Q 045760 185 EYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKD----E-----EGKVEDVDEEKE--KEEKKKKKIK 253 (700)
Q Consensus 185 e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~--~~~~~~~~~~ 253 (700)
+||+.++|+++|++||.|++|||+++..+++++++++++++.++++ + ++..++.+++++ ++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 5999999999999999999999999998887777776654432110 1 111222222222 2345677788
Q ss_pred eeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCce
Q 045760 254 EVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNI 333 (700)
Q Consensus 254 ~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i 333 (700)
+++++|++||+++|||+|+|++||+++|.+||++++++|++||+|+||++||+++|+||||||+++|+++|.....++||
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~~~~~~i 160 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFENDKKKNGI 160 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSSTT--SE
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhhhccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999765557999
Q ss_pred EEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 045760 334 KLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESF 413 (700)
Q Consensus 334 ~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~ 413 (700)
+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|+++++|+++|.+||++|
T Consensus 161 kLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d~e~y~~f~~~~ 240 (531)
T PF00183_consen 161 KLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKDREKYEKFWKEF 240 (531)
T ss_dssp EEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred eeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEe
Q 045760 414 SKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYM 493 (700)
Q Consensus 414 ~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l 493 (700)
|.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|++++.+.+|||+|+|++||||||||
T Consensus 241 g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~l 320 (531)
T PF00183_consen 241 GKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLFL 320 (531)
T ss_dssp HHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEEE
T ss_pred hHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCceEEEe
Confidence 99999999999999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEe
Q 045760 494 VDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVT 573 (700)
Q Consensus 494 ~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~ 573 (700)
++|||+|||++|++|+|++|+||+++++++++.+++++..+..++++++|++|||++|+++|.+|++|+||++||||||+
T Consensus 321 ~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa~lv~ 400 (531)
T PF00183_consen 321 TDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPAVLVS 400 (531)
T ss_dssp -SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSEEEEE
T ss_pred CCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcceeec
Confidence 99999999999999999999999999999987666666666778899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhCCCCCCCH
Q 045760 574 GEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDP 653 (700)
Q Consensus 574 ~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~AlL~~G~~i~dp 653 (700)
+++|+|++|+|||+||++++..+..++.+++||||||+||||++|+++...+++++.++++|+||||+|+|++|+.++||
T Consensus 401 ~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp 480 (531)
T PF00183_consen 401 SEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDP 480 (531)
T ss_dssp -SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSH
T ss_pred ccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccH
Confidence 99999999999999998876655567778999999999999999999988877788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccCCCCCCCCC---CCCCC-CcccCCCCccCC
Q 045760 654 NTFGNRIHRMLKLGLSIEEDAGDADADMPP---LEDAA-DDAEGSKMEEVD 700 (700)
Q Consensus 654 ~~f~~ri~~ll~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~ 700 (700)
++|++|+|+||.++|+++.++..++.+.++ ++++. ++.+++++|+||
T Consensus 481 ~~F~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~vd 531 (531)
T PF00183_consen 481 AAFAKRINKLLEKSLGVDPDAEVEEEDEEEEEEEEEEEEEDKEDSEMEEVD 531 (531)
T ss_dssp HHHHHHHHHHHHHTTC--STTTTTTGGG-GGG--------------SSS--
T ss_pred HHHHHHHHHHHHHhcCCCcCCcccccccccccCCCCCCcCCCcccccccCC
Confidence 999999999999999998775444321111 11122 233567778776
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2.8e-132 Score=1132.48 Aligned_cols=573 Identities=22% Similarity=0.329 Sum_probs=504.0
Q ss_pred ccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE-cCCCCEEEEEeCCCC
Q 045760 7 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP-DKTNNSLSIIDSGIG 85 (700)
Q Consensus 7 ~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 85 (700)
.|+||+|+++||++|+++|||||.+|||||||||+|||+++++.. + ..+.+|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 489999999999999999999999999999999999999987642 1 2346788877 778899999999999
Q ss_pred CCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceEEEEEccCceEEEEeCC
Q 045760 86 MTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 86 Mt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~~w~s~~~~~~~i~~~~ 164 (700)
||.+++.++|++||+||++.|. +. ..+..+||+|||||||+||||++|+|.|++. ++.++.|++.+++.|+|+..+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~ 150 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLE 150 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCC
Confidence 9999999999999999998753 21 2346799999999999999999999999986 578999999999999999743
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccchHHHH
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVDEEKEK 244 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (700)
+....+||+|+|+++++..+|++.++|++++++||.|++|||+++++
T Consensus 151 -~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~-------------------------------- 197 (601)
T PRK14083 151 -TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE-------------------------------- 197 (601)
T ss_pred -CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc--------------------------------
Confidence 24568999999999999999999999999999999999999999641
Q ss_pred HhhhhccceeeecceeeeccCCCCccCCCCCCC--HHHHHHHHHHHhcCccCcccceeeecccceeeEEEEE-ecCCCCC
Q 045760 245 EEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEIT--KEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILF-VPKRAPF 321 (700)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~--~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly-iP~~~p~ 321 (700)
.++||+++|||+|+|+++| ++||.+||+.+++ ++||+|+|+++||+.. +|+|| ||+++|+
T Consensus 198 --------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~ 260 (601)
T PRK14083 198 --------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSP 260 (601)
T ss_pred --------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCc
Confidence 2679999999999999999 9999999999997 7999999999999875 77887 6999987
Q ss_pred CcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHh
Q 045760 322 DLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAE 401 (700)
Q Consensus 322 ~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~ 401 (700)
+ .+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|.++|+
T Consensus 261 ~------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~ 334 (601)
T PRK14083 261 A------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLAT 334 (601)
T ss_pred c------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 2679999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCC-CHHHHhcChh
Q 045760 402 -NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGE-SKKAVENSPF 479 (700)
Q Consensus 402 -d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~-~~~~~~~sp~ 479 (700)
|+++|++||++||.+||+|+++|.+|+++|++||||+||.+ .+||+||++|| +.|||++|+ +..++.
T Consensus 335 ~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~---~~sL~eY~~r~----~~IyY~~~~~~~~~~~---- 403 (601)
T PRK14083 335 TDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDG---RMTLAEIRRRH----GVIRYTSSVDEFRQLA---- 403 (601)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCC---CcCHHHHHHhC----CeEEEEcCHHHHHHHH----
Confidence 99999999999999999999999999999999999999975 69999999996 589999996 666554
Q ss_pred HHHHHHcCCEEEEeCCCchHHHHHHHhh-ccCceeEEecccCCC--CCCchhHHhhHHHHHHHHHHHHHHHHHHhCCccc
Q 045760 480 LEKLKKKGYEVLYMVDAIDEYAVGQLKE-FEGKKLVSATKEGLK--LDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVE 556 (700)
Q Consensus 480 le~~~~kg~eVL~l~dpiDe~~l~~L~~-y~gk~f~sV~~~~~~--l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~ 556 (700)
+.|++||+|||+|++||||+++++|.+ |+|++|++|+++++. ++..+ ...++++++|++|++++|++++.
T Consensus 404 -~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~L~~~~~ 476 (601)
T PRK14083 404 -PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLT------PEEELALRPFLAEAREVLAPFGC 476 (601)
T ss_pred -HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccc------hhhHHHHHHHHHHHHHHhCccce
Confidence 799999999999999999999999998 999999999998764 33211 22355799999999999999766
Q ss_pred EE-EEeecCCCCCEEEEeCCCcccHHHHHHHHHHhc-ccC-------cc-cccCCCCceEEeCCCChHHHHHHHhhccCC
Q 045760 557 KV-VVSDRVVDSPCCLVTGEYGWTANMERIMKAQAL-RDN-------SM-AGYMSSKKTMEINPENPIMEELRKRADADK 626 (700)
Q Consensus 557 ~V-~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~-~~~-------~~-~~~~~~k~iLEINp~HplIkkL~~~~~~d~ 626 (700)
+| ++|.||+++|||++++++ .+|+|+|+++.. .++ .+ ...+..+++|||||+||||++|+.. .
T Consensus 477 ~v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~--~-- 549 (601)
T PRK14083 477 DVVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL--G-- 549 (601)
T ss_pred EEEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc--c--
Confidence 66 778899999999999884 466666654321 110 01 1233578999999999999999875 2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHhccCCC
Q 045760 627 NDKSVKDLVLLLFETALLTSGFSLD--DPNTFGNRIHRMLKLGLSIE 671 (700)
Q Consensus 627 ~~~~~~~~~~~Lyd~AlL~~G~~i~--dp~~f~~ri~~ll~~~l~~~ 671 (700)
+++.+++++++|||+|+|++|++++ +|+.|+.++++||..+++-+
T Consensus 550 d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 550 DPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3566899999999999999998888 99999999999999888654
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.2e-16 Score=151.61 Aligned_cols=102 Identities=37% Similarity=0.466 Sum_probs=76.9
Q ss_pred CCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCch
Q 045760 26 YSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD-KTNNSLSIIDSGIGMTKADLVNNLGTIARSGTK 104 (700)
Q Consensus 26 Ys~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~ 104 (700)
|+. ..+|+|||+||+||+++. +.|.|..+ .+...|.|.|||.||+.++|.. +++++.|++.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999999852 45666555 3558899999999999999997 7789988764
Q ss_pred hHHHHHhcCCCCccccccccc-hhheeeecceEEEEEecCC-CceEEEEE
Q 045760 105 EFMEALAAGADVSMIGQFGVG-FYSAYLVAEKVIVTAKHND-DEQYIWES 152 (700)
Q Consensus 105 ~f~~~~~~~~~~~~IG~FGIG-f~S~F~vadkv~V~Sk~~~-~~~~~w~s 152 (700)
.. .....+|+||+| ++|+|+++++++|+|+..+ ...+.|..
T Consensus 63 ~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 124579999999 8899999999999999853 34555543
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.9e-13 Score=147.04 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=110.4
Q ss_pred HHHHH-HcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCC-EEEEEeCCCCCCHHHHHHHH
Q 045760 18 LSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNN-SLSIIDSGIGMTKADLVNNL 95 (700)
Q Consensus 18 l~ll~-~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~dl~~~l 95 (700)
...|. .....++..+|+|||+||.||.+. .|.|.+..++. .|+|.|||.||+.+++...+
T Consensus 11 ~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~------------------~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~ 72 (312)
T TIGR00585 11 VNKIAAGEVIERPASVVKELVENSLDAGAT------------------RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC 72 (312)
T ss_pred HHHHhCcCchhhHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 33443 566778999999999999999741 34554443443 49999999999999999655
Q ss_pred hHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEec--CCCceEEEEEccCceEEEEeCCCCCCCCCce
Q 045760 96 GTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKH--NDDEQYIWESQAGGSFTVTRDTSGELLGRGT 173 (700)
Q Consensus 96 ~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~--~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT 173 (700)
...++|-...+. .+ ......|++|.|++|...+| +++|+|+. .++.++.|...|+ .+... ......+||
T Consensus 73 ~~~~tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~GT 143 (312)
T TIGR00585 73 ERHATSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEI-KPAPRPVGT 143 (312)
T ss_pred hCCCcCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCccc-ccccCCCcc
Confidence 544433222211 11 23457899999999999998 79999997 3556788875443 22211 113458999
Q ss_pred EEEEE-ec---cchhhhcc-----HHHHHHHHHHHhCCC---CcceEEe
Q 045760 174 KITLH-LK---EDQLEYLE-----ERRLKDLIKKHSEFI---SYPISLW 210 (700)
Q Consensus 174 ~I~L~-lk---~~~~e~l~-----~~~i~~ii~~ys~~l---~~PI~l~ 210 (700)
+|++. |. +.++.|+. ...++.++.+|+-.- .|.++.+
T Consensus 144 tV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 144 TVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred EEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 99997 21 22333332 467999999999544 4555553
No 11
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.7e-14 Score=164.03 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=112.8
Q ss_pred CCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCE-EEEEeCCCCCCHHHHHHHHhHhhhcCc
Q 045760 25 FYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNS-LSIIDSGIGMTKADLVNNLGTIARSGT 103 (700)
Q Consensus 25 LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~-l~I~DnGiGMt~~dl~~~l~tIa~S~~ 103 (700)
....|..+|||||.||+||++ .+|+|.++.++.. |.|+|||+||+++||.-++.++|+|--
T Consensus 20 VIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 20 VIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred eeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 334589999999999999996 3788888777755 999999999999999999999998832
Q ss_pred hhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceEEEEEccCceE-EEEeCCCCCCCCCceEEEEE-ec
Q 045760 104 KEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQYIWESQAGGSF-TVTRDTSGELLGRGTKITLH-LK 180 (700)
Q Consensus 104 ~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~~w~s~~~~~~-~i~~~~~~~~~~~GT~I~L~-lk 180 (700)
..+-+ + ......|..|=.+.|.-.||. ++|+|+.. +..++.|...|++.- ++.+ .....||+|.+. |-
T Consensus 82 ~~~~D-L---~~I~TlGFRGEAL~SIasVsr-lti~Srt~~~~~~~~~~~~g~~~~~~~~p----~a~~~GTtVeV~dLF 152 (638)
T COG0323 82 ASLED-L---FRIRTLGFRGEALASIASVSR-LTITSRTAEASEGTQIYAEGGGMEVTVKP----AAHPVGTTVEVRDLF 152 (638)
T ss_pred CchhH-H---HHhhccCccHHHHHHHHhhhe-eEEEeecCCcCceEEEEecCCcccccccC----CCCCCCCEEEehHhh
Confidence 22110 0 123567899999988888854 99999964 467888888776543 4444 234669999985 21
Q ss_pred ---cchhhhc-----cHHHHHHHHHHHhCCCC
Q 045760 181 ---EDQLEYL-----EERRLKDLIKKHSEFIS 204 (700)
Q Consensus 181 ---~~~~e~l-----~~~~i~~ii~~ys~~l~ 204 (700)
+.++.|+ +-.+|.++|++|+-.-|
T Consensus 153 ~NtPaRrKflks~~~E~~~i~~vv~r~ALahp 184 (638)
T COG0323 153 YNTPARRKFLKSEKTEFGHITELINRYALAHP 184 (638)
T ss_pred ccChHHHHhhcccHHHHHHHHHHHHHHHhcCC
Confidence 2223333 44789999999997663
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.43 E-value=4.3e-12 Score=148.01 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=107.8
Q ss_pred HcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 23 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 23 ~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
.....+|..+|+|||+||+||+++ .|.|.+..++ ..|+|.|||.||+.+++...+...++|
T Consensus 17 gevI~~~~svvkElveNsiDAgat------------------~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGAT------------------RIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCCC------------------EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 556678999999999999999852 4566654333 479999999999999999877766655
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCC-CceEEEEEccCceEEEEeCCCCCCCCCceEEEEE-e
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQYIWESQAGGSFTVTRDTSGELLGRGTKITLH-L 179 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~-l 179 (700)
--..+ +.+ ......|..|.|+.|.-.|+ +++|+|+..+ ..++.+...++....+.+ ....+||+|++. |
T Consensus 79 Ki~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~~L 149 (617)
T PRK00095 79 KIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVRDL 149 (617)
T ss_pred CCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEechh
Confidence 22111 111 12356799999999888886 7999999853 456776655543222222 234799999996 2
Q ss_pred ---ccchhhhc-----cHHHHHHHHHHHhCCCC
Q 045760 180 ---KEDQLEYL-----EERRLKDLIKKHSEFIS 204 (700)
Q Consensus 180 ---k~~~~e~l-----~~~~i~~ii~~ys~~l~ 204 (700)
-+.++.|+ +...|.+++++|+-.-|
T Consensus 150 F~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~p 182 (617)
T PRK00095 150 FFNTPARRKFLKSEKTELGHIDDVVNRLALAHP 182 (617)
T ss_pred hccCcHHHHhccCcHHHHHHHHHHHHHHhhcCC
Confidence 23444554 33578999999987654
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.33 E-value=5.4e-12 Score=136.74 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=106.6
Q ss_pred CCCc----hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhHhhh
Q 045760 26 YSNK----EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD-KTNNSLSIIDSGIGMTKADLVNNLGTIAR 100 (700)
Q Consensus 26 Ys~~----~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~dl~~~l~tIa~ 100 (700)
|++| ...+||||.||.|||+....+ +.+.|+|.-- .+-.+++|+|||+|++.+.+.+.||++-.
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 6665 357999999999999865443 5667777643 44567999999999999999999999988
Q ss_pred cCchhHHHHHhcCCCCccccccccchhheeee-----cceEEEEEecCC-CceEEEEEccC---ceEEE-EeC-CCCCCC
Q 045760 101 SGTKEFMEALAAGADVSMIGQFGVGFYSAYLV-----AEKVIVTAKHND-DEQYIWESQAG---GSFTV-TRD-TSGELL 169 (700)
Q Consensus 101 S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~v-----adkv~V~Sk~~~-~~~~~w~s~~~---~~~~i-~~~-~~~~~~ 169 (700)
|++- .. ..+..||+|||..+|.+. +..|.|.|+..+ ..++.+...-+ ++-.| +.. -+....
T Consensus 99 gSKf--h~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~ 170 (538)
T COG1389 99 GSKF--HR------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGG 170 (538)
T ss_pred cchh--hh------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCC
Confidence 8763 22 234569999998766654 578999998764 45554432211 11111 110 011345
Q ss_pred CCceEEEEEeccchhhhccHHH-HHHHHHHHhCCCCc
Q 045760 170 GRGTKITLHLKEDQLEYLEERR-LKDLIKKHSEFISY 205 (700)
Q Consensus 170 ~~GT~I~L~lk~~~~e~l~~~~-i~~ii~~ys~~l~~ 205 (700)
+|||+|.|+++..+ |-...+ +.++|++-+---|+
T Consensus 171 ~hGT~Vel~~~~~~--~~~~~qgi~eYlkrtaiinPh 205 (538)
T COG1389 171 WHGTRVELELKGVW--YRAKRQGIYEYLKRTAIINPH 205 (538)
T ss_pred CCceEEEEEecccc--hhhcccCHHHHHHHHhhcCCc
Confidence 79999999999875 222333 56666655554443
No 14
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.20 E-value=1.4e-10 Score=131.70 Aligned_cols=158 Identities=22% Similarity=0.323 Sum_probs=103.7
Q ss_pred CCCc----hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc---CCCCEEEEEeCCCCCCHHHHHHHHhHh
Q 045760 26 YSNK----EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD---KTNNSLSIIDSGIGMTKADLVNNLGTI 98 (700)
Q Consensus 26 Ys~~----~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DnGiGMt~~dl~~~l~tI 98 (700)
|+++ ..+|+|||+||+||++.... .+.+.|.+... .+...|+|.|||+||+.+++...|+..
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 5555 55799999999999974211 12345555432 223569999999999999999888776
Q ss_pred hhcCchhHHHHHhcCCCCccccccccchhheeeecc-----eEEEEEecCCCc-eEEEEEcc-----CceEEEEeCCCCC
Q 045760 99 ARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAE-----KVIVTAKHNDDE-QYIWESQA-----GGSFTVTRDTSGE 167 (700)
Q Consensus 99 a~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vad-----kv~V~Sk~~~~~-~~~w~s~~-----~~~~~i~~~~~~~ 167 (700)
..+++ |. ......|++|+|+.++.+++. .+.|.|+.+++. ++.+...- .+. .+.......
T Consensus 99 ~~~SK--~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~ 169 (535)
T PRK04184 99 LYGSK--FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDW 169 (535)
T ss_pred hcccc--cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCC
Confidence 44332 10 113456999999999988764 589999876544 55544321 121 111111112
Q ss_pred CCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCc
Q 045760 168 LLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISY 205 (700)
Q Consensus 168 ~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~ 205 (700)
...+||+|.+.++.+... ...+|.++|++++-.-|+
T Consensus 170 ~~~~GT~V~V~l~~~~~~--~~~~I~e~i~r~Al~nP~ 205 (535)
T PRK04184 170 DRWHGTRVELEIEGDWYR--AKQRIYEYLKRTAIVNPH 205 (535)
T ss_pred CCCCCEEEEEEECCcChh--hHHHHHHHHHHHHHhCCC
Confidence 457999999998876532 267899999999987754
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.05 E-value=1.5e-09 Score=122.10 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=97.3
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC--C-CCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK--T-NNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFM 107 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~--~-~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~ 107 (700)
.+++|||.||+||++... ....|.|.+.. . ...|+|.|||.||+.+++...+....++++..
T Consensus 31 ~VlkELVeNAIDA~~~~g-------------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~-- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-------------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH-- 95 (488)
T ss_pred HHHHHHHHHHHHHhhccC-------------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc--
Confidence 588999999999996311 01234444432 2 23699999999999999998888754443311
Q ss_pred HHHhcCCCCccccccccchhheeeecc-----eEEEEEecCCC-ceEEEEEc-----cCceEEEEeCCCCCCCCCceEEE
Q 045760 108 EALAAGADVSMIGQFGVGFYSAYLVAE-----KVIVTAKHNDD-EQYIWESQ-----AGGSFTVTRDTSGELLGRGTKIT 176 (700)
Q Consensus 108 ~~~~~~~~~~~IG~FGIGf~S~F~vad-----kv~V~Sk~~~~-~~~~w~s~-----~~~~~~i~~~~~~~~~~~GT~I~ 176 (700)
......|++|+|+.++.+++. .++|.|+.++. .++.+... .+|. .+...+.+...++||+|+
T Consensus 96 ------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~ 168 (488)
T TIGR01052 96 ------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIE 168 (488)
T ss_pred ------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEE
Confidence 123456999999999888875 49999987643 34455442 1122 111111112225899999
Q ss_pred EEeccchhhhccHHHHHHHHHHHhCCCC
Q 045760 177 LHLKEDQLEYLEERRLKDLIKKHSEFIS 204 (700)
Q Consensus 177 L~lk~~~~e~l~~~~i~~ii~~ys~~l~ 204 (700)
+.+......+ ...+|.+++++++-.-|
T Consensus 169 v~f~~~~~r~-~k~~i~e~l~~~Al~nP 195 (488)
T TIGR01052 169 LEFKGVSYRR-SKQGVYEYLRRTAVANP 195 (488)
T ss_pred EEECCceeec-cHHHHHHHHHHHHhhCC
Confidence 9865433211 34789999999987665
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.02 E-value=1.5e-09 Score=125.76 Aligned_cols=150 Identities=21% Similarity=0.272 Sum_probs=99.8
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN--NSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
.+|+|||.||+||+..- ...+.|.|.+...+ ..|.|.|||+||+++++...|..++++++ |.
T Consensus 49 tVLkNLIeNALDAs~~~-------------gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEEA-------------GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH- 112 (795)
T ss_pred HHHHHHHHHHHHhCccc-------------CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc-
Confidence 68999999999998521 01124444443333 46999999999999999998888775543 11
Q ss_pred HHhcCCCCccccccccchhheeeecc-----eEEEEEecCC-CceEEEEE--ccCc-eEEE--EeCCCCCCCCCceEEEE
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAE-----KVIVTAKHND-DEQYIWES--QAGG-SFTV--TRDTSGELLGRGTKITL 177 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vad-----kv~V~Sk~~~-~~~~~w~s--~~~~-~~~i--~~~~~~~~~~~GT~I~L 177 (700)
......|+.|+|+-++.+++. .+.|+|+..+ ..++.|.. +++. .-.| ... .....++||+|++
T Consensus 113 -----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~-~~~~~~~GT~IeV 186 (795)
T PRK14868 113 -----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEET-TTWDRPHGTRIEL 186 (795)
T ss_pred -----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceeccee-cccCCCCceEEEE
Confidence 111345899999998888774 4899998754 45665543 3331 1111 111 1124689999999
Q ss_pred EeccchhhhccHHHHHHHHHHHhCCCCc
Q 045760 178 HLKEDQLEYLEERRLKDLIKKHSEFISY 205 (700)
Q Consensus 178 ~lk~~~~e~l~~~~i~~ii~~ys~~l~~ 205 (700)
.|..+. ....+|.++|++++---|+
T Consensus 187 ~Lf~N~---pAR~kI~eyl~r~Al~nP~ 211 (795)
T PRK14868 187 EMEANM---RARQQLHDYIKHTAVVNPH 211 (795)
T ss_pred EEEccC---chhhhHHHHHHHHHhhCCC
Confidence 986543 3356789999998876664
No 17
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.67 E-value=1.1e-07 Score=105.98 Aligned_cols=152 Identities=27% Similarity=0.283 Sum_probs=100.1
Q ss_pred cCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhHhhhcC
Q 045760 24 TFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNNLGTIARSG 102 (700)
Q Consensus 24 ~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~tIa~S~ 102 (700)
.+..-|.-+|+|||.|+.||.+ ..|.|.+..++ +.|.|.|||.|+-++||.-...+..+|-
T Consensus 23 EVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 23 EVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 3444588899999999999985 36888776555 5578999999999999996556666653
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCC-ceEEEEEccCceEEEEeCCCCCCCCCceEEEEE---
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDD-EQYIWESQAGGSFTVTRDTSGELLGRGTKITLH--- 178 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~-~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~--- 178 (700)
-..|- .+ ...+..|..|-.+-|.--|| +|+|+|+..++ .||.-. -.+|.. ...|++.....||.|++.
T Consensus 85 L~kFE-DL---~~lsTyGFRGEALASiShVA-~VtV~TK~~~~~cayras-Y~DGkm--~~~pKpcAgk~GT~I~vedLF 156 (694)
T KOG1979|consen 85 LTKFE-DL---FSLSTYGFRGEALASISHVA-HVTVTTKTAEGKCAYRAS-YRDGKM--IATPKPCAGKQGTIITVEDLF 156 (694)
T ss_pred cchhH-HH---HhhhhcCccHHHHhhhhhee-EEEEEEeecCceeeeEEE-eecccc--ccCCCCccCCCceEEEehHhh
Confidence 22231 11 12345677777766655554 59999997543 344322 223332 222444567899999984
Q ss_pred ---------eccchhhhccHHHHHHHHHHHhCCCC
Q 045760 179 ---------LKEDQLEYLEERRLKDLIKKHSEFIS 204 (700)
Q Consensus 179 ---------lk~~~~e~l~~~~i~~ii~~ys~~l~ 204 (700)
|+..++|| .+|..++.+|+-|-+
T Consensus 157 YN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn~ 188 (694)
T KOG1979|consen 157 YNMPTRRKALRNHAEEY---RKIMDLVGRYAIHNP 188 (694)
T ss_pred ccCHHHHHHhcCcHHHH---HHHHHHHHHHheeCC
Confidence 22233444 678899999997754
No 18
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.64 E-value=7.9e-08 Score=112.25 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=101.2
Q ss_pred CchhHHHHHHhcHHh---HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHh
Q 045760 28 NKEIFLRELISNSSD---ALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD--------LVNNLG 96 (700)
Q Consensus 28 ~~~iflRELIqNA~D---A~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~ 96 (700)
++...|.|||.||+| |+- .-.|.|.++.+ ..|+|.|||.||+.++ +.-.|+
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~-----------------a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t 91 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGF-----------------ASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILT 91 (625)
T ss_pred CcceeehhhhhcccchhhcCC-----------------CCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhh
Confidence 357899999999999 531 23677777655 7899999999999988 776664
Q ss_pred HhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEE
Q 045760 97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS-FTVTRDTSGELLGRGTKI 175 (700)
Q Consensus 97 tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~GT~I 175 (700)
+.-.+|+- ....-....|..|+|..|+-.++.+++|.|+..+.. |.++..++.. -.+..........+||+|
T Consensus 92 ~lhagsK~------~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V 164 (625)
T TIGR01055 92 TLHAGGKF------SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSV 164 (625)
T ss_pred cccccCCC------CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEE
Confidence 44333331 111112457999999999999999999999865432 4444433211 011111011124589999
Q ss_pred EEEeccch--hhhccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 176 TLHLKEDQ--LEYLEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 176 ~L~lk~~~--~e~l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
++...... ..-.+..+|.+.+++++-..| .-|.+++
T Consensus 165 ~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 165 HFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred EEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 98533211 011255789999998877654 5555554
No 19
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.61 E-value=1.8e-07 Score=108.43 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=89.9
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT-NNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
..++|||.||+||+.... ..+.+.|.+..... ...|+|.|||.||+.+++...|...-.+++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~-- 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH-- 103 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc--
Confidence 578999999999996311 01234444433222 234999999999999999988877432222 11
Q ss_pred HhcCCCCccccccccchhheeeecce-----EEEEEecCCCce--EEEEEcc---CceEEEEeCCCCCCCCCceEEEEEe
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEK-----VIVTAKHNDDEQ--YIWESQA---GGSFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadk-----v~V~Sk~~~~~~--~~w~s~~---~~~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
.-....|++|+|+.++.+++.. +.|.|+.+++.. +.|..+- +|...-... ....++||+|++.+
T Consensus 104 ----~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~--~~~~~~GT~Ie~~V 177 (659)
T PRK14867 104 ----RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKV--REGFWRGTRVEGEF 177 (659)
T ss_pred ----ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccccc--CCCCCCCcEEEEEE
Confidence 0124558999999887766543 588887654433 2222211 122111111 12357999999655
Q ss_pred ccchhhhccHHHHHHHHHHHhCCCCc
Q 045760 180 KEDQLEYLEERRLKDLIKKHSEFISY 205 (700)
Q Consensus 180 k~~~~e~l~~~~i~~ii~~ys~~l~~ 205 (700)
++-...-. ..++.++|++++---|.
T Consensus 178 ~dLFynR~-E~~i~e~l~r~ALanP~ 202 (659)
T PRK14867 178 KEVTYNRR-EQGPFEYLRRISLSTPH 202 (659)
T ss_pred eeceechh-hHHHHHHHHHHHHhCCC
Confidence 43110011 22388899998876653
No 20
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.60 E-value=1.2e-07 Score=111.14 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=101.6
Q ss_pred chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHhHhhh
Q 045760 29 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVN--------NLGTIAR 100 (700)
Q Consensus 29 ~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~--------~l~tIa~ 100 (700)
+...++|||.||+|++.. . ....|.|.++.+ +.|+|.|||.||+.+.+.. .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a-g-------------~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA-G-------------HGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc-C-------------CCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 467999999999999741 1 123677777654 4899999999999998886 5666433
Q ss_pred cCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEEe
Q 045760 101 SGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGG-SFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 101 S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~-~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
+|+-. ........|..|+|..++-.++.+++|+|+..+. .|.++..++. .-.+..........+||+|++..
T Consensus 103 gsKf~------~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~-~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 103 GGKFS------NKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK-VYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred cCccC------CccccccCcccccchhhhhhheeeEEEEEEeCCe-EEEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 44311 1111245799999999999999999999987542 2433333221 11111111111157999999964
Q ss_pred ccchhhh----ccHHHHHHHHHHHhCCCC-cceEEe
Q 045760 180 KEDQLEY----LEERRLKDLIKKHSEFIS-YPISLW 210 (700)
Q Consensus 180 k~~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~ 210 (700)
. ..-| .+...|.+.+++++-..| .-|.++
T Consensus 176 D--~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~ 209 (631)
T PRK05559 176 D--PKIFDSPKFSPERLKERLRSKAFLLPGLTITLN 209 (631)
T ss_pred C--HHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 3 3222 356788999999886543 344444
No 21
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.58 E-value=8.3e-08 Score=111.73 Aligned_cols=154 Identities=23% Similarity=0.224 Sum_probs=94.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhHhhhcCch
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------NNLGTIARSGTK 104 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~tIa~S~~~ 104 (700)
.++|||.||+||... + ..-.|.|.++.++ .|+|.|||.||+.+... ..+.++.++|.+
T Consensus 5 ~v~ElvdNAiD~~~~------------g--~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA------------G--YMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc------------C--CCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999842 1 1246777776654 99999999999954321 122233333321
Q ss_pred hHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceE-E-EEeCCCCCCCCCceEEEEEeccc
Q 045760 105 EFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSF-T-VTRDTSGELLGRGTKITLHLKED 182 (700)
Q Consensus 105 ~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~-~-i~~~~~~~~~~~GT~I~L~lk~~ 182 (700)
| .........|..|+|..|+-.++.+++|+|+.++. .|.++...+|.- + +... +....+||+|+. .++
T Consensus 70 -f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~--~~~~~~GT~V~F--~Pd 139 (594)
T smart00433 70 -F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKII--GDTKKDGTKVTF--KPD 139 (594)
T ss_pred -C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceec--CCCCCCCcEEEE--EEC
Confidence 1 11112336799999999999999999999987633 344333221211 1 1111 133579999995 455
Q ss_pred hhhhc-----cHHHHHHHHHHHhCCCC-cceEEe
Q 045760 183 QLEYL-----EERRLKDLIKKHSEFIS-YPISLW 210 (700)
Q Consensus 183 ~~e~l-----~~~~i~~ii~~ys~~l~-~PI~l~ 210 (700)
...|. +...|.+.++.++-..| .-|.++
T Consensus 140 ~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~ 173 (594)
T smart00433 140 LEIFGMTTDDDFELLKRRLRELAFLNKGVKITLN 173 (594)
T ss_pred HHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEe
Confidence 55554 34778888998875553 344444
No 22
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.54 E-value=1.8e-07 Score=106.75 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=100.7
Q ss_pred HHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCCCHHHHHHHHhH
Q 045760 19 SLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK-TNNSLSIIDSGIGMTKADLVNNLGT 97 (700)
Q Consensus 19 ~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~~dl~~~l~t 97 (700)
.|-..+...+..++|||||.||.||+++ .|.|.++. +-..|.|.|||.|++..+..---..
T Consensus 11 rI~S~qvI~sl~sAVKELvENSiDAGAT------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lk 72 (672)
T KOG1978|consen 11 RICSSQVITSLVSAVKELVENSIDAGAT------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLALK 72 (672)
T ss_pred ccccCCeeccHHHHHHHHHhcCcccCCc------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhhh
Confidence 3444555667789999999999999973 56666644 3467999999999999988742222
Q ss_pred hhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceEEEEEccCceEEEEeCCCCCCCCCceEEE
Q 045760 98 IARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQYIWESQAGGSFTVTRDTSGELLGRGTKIT 176 (700)
Q Consensus 98 Ia~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~ 176 (700)
.-+|.-.+|-+ -......|..|-.+-|.-.+|+ |.|.|++. +.-|..|.-+..|... ... .-+.++||+|.
T Consensus 73 h~TSKi~~f~D----l~~l~T~GFRGEALSsLCa~~d-v~I~Trt~~~~vgt~l~~Dh~G~I~-~k~--~~ar~~GTTV~ 144 (672)
T KOG1978|consen 73 HTTSKIVSFAD----LAVLFTLGFRGEALSSLCALGD-VMISTRSHSAKVGTRLVYDHDGHII-QKK--PVARGRGTTVM 144 (672)
T ss_pred hhhhcccchhh----hhhhhhhhhHHHHHHhhhhccc-eEEEEeeccCccceeEEEccCCcee-eec--cccCCCCCEEE
Confidence 22232222211 1123456777777744444555 88999875 4468888888777654 221 14578999999
Q ss_pred EE-ecc----chhhhc-----cHHHHHHHHHHHhCCC
Q 045760 177 LH-LKE----DQLEYL-----EERRLKDLIKKHSEFI 203 (700)
Q Consensus 177 L~-lk~----~~~e~l-----~~~~i~~ii~~ys~~l 203 (700)
+. |-. -..+|- +-.++..++..|+-+-
T Consensus 145 v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li~ 181 (672)
T KOG1978|consen 145 VRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALIS 181 (672)
T ss_pred HhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhhc
Confidence 84 221 112221 2245777888887654
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.50 E-value=2.8e-07 Score=108.06 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=95.2
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhHhhhcC
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------NNLGTIARSG 102 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~tIa~S~ 102 (700)
...++|||.||+|.... . ....|.|.++.+ +.|+|.|||.||+.+--. ..+.++.++|
T Consensus 39 ~~~v~ElvdNaiDe~~a-g-------------~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEALA-G-------------YCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhcccccccC-C-------------CCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 35899999999994310 0 123677777654 589999999999986211 1122333333
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceE-EEEeCCCCCCCCCceEEEEEecc
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSF-TVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~-~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
.+ | .........|..|+|..|+-.++.+++|+|+..+. +|..+..++..- .+... +.....||+|+. .+
T Consensus 104 ~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G~~~~~~~~~--~~~~~~GT~I~F--~P 173 (638)
T PRK05644 104 GK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERGVPVTPLEVI--GETDETGTTVTF--KP 173 (638)
T ss_pred Cc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECCeEccCcccc--CCcCCCCcEEEE--EE
Confidence 21 1 11111235799999999999999999999986533 554444432111 11211 223579999995 44
Q ss_pred chhhh----ccHHHHHHHHHHHhCCCC-cceEEe
Q 045760 182 DQLEY----LEERRLKDLIKKHSEFIS-YPISLW 210 (700)
Q Consensus 182 ~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~ 210 (700)
+..-| ++...|...++.++-..| .-|.++
T Consensus 174 d~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 174 DPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 44333 366789999999986543 344444
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.47 E-value=3.5e-07 Score=107.80 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=93.4
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhHhhhcC
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------NNLGTIARSG 102 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~tIa~S~ 102 (700)
...++|||.||+|-... . ....|.|.++.+ +.|+|.|||.||+.+--. ..+.++.++|
T Consensus 32 ~~vv~Elv~NaiDe~~a-g-------------~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA-G-------------YCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhcccccccc-C-------------CCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 46899999999993210 0 123677777654 469999999999975110 1122222232
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEE-EEeCCCCCCCCCceEEEEEecc
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFT-VTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~-i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
.+ | .........|..|+|..|+-.++.+++|.|+..+. .|..+..++..-. +... +....+||+|+....+
T Consensus 97 ~k-f----~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~-~~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~pdp 168 (654)
T TIGR01059 97 GK-F----DKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK-IYRQEFERGIPLGPLEVV--GETKKTGTTVRFWPDP 168 (654)
T ss_pred Cc-c----CCCcceecCCccchhHHHHHHhcCeEEEEEEECCe-EEEEEEeCCCcccCceec--cCCCCCCcEEEEEECh
Confidence 21 2 11112246799999999999999999999987543 2443333321111 1111 2345799999955333
Q ss_pred chhhh----ccHHHHHHHHHHHhCCCC-cceEEe
Q 045760 182 DQLEY----LEERRLKDLIKKHSEFIS-YPISLW 210 (700)
Q Consensus 182 ~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~ 210 (700)
..| .+...|.+.++.++-..| .-|.++
T Consensus 169 --~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 200 (654)
T TIGR01059 169 --EIFETTEFDFDILAKRLRELAFLNSGVKISLE 200 (654)
T ss_pred --HHhCCcccCHHHHHHHHHHhhccCCCeEEEEE
Confidence 234 366789999999985443 334444
No 25
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.46 E-value=3.8e-07 Score=82.38 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=59.1
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.+|.||++||+++.... ..+.|.+..+.+.-.|+|.|||.||+.+++...+.....+ +
T Consensus 8 ~il~~ll~Na~~~~~~~--------------~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~-~------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPEG--------------GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS-D------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHT--------------SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS-S-------
T ss_pred HHHHHHHHHHHHHhcCC--------------CEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc-c-------
Confidence 47899999999998631 2355666556566779999999999999999655432221 1
Q ss_pred hcCCCCccccccccchhheeeecceE
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAEKV 136 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vadkv 136 (700)
.+....+.+|+|++.+..++++.
T Consensus 66 ---~~~~~~~g~GlGL~~~~~~~~~~ 88 (111)
T PF02518_consen 66 ---KSETSISGHGLGLYIVKQIAERH 88 (111)
T ss_dssp ---SSSGGSSSSSHHHHHHHHHHHHT
T ss_pred ---ccccccCCCChHHHHHHHHHHHC
Confidence 12345677999999999888753
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.32 E-value=1.3e-06 Score=103.39 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=94.8
Q ss_pred hhHHHHHHhcHHh---HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH----------HHHHHHh
Q 045760 30 EIFLRELISNSSD---ALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKA----------DLVNNLG 96 (700)
Q Consensus 30 ~iflRELIqNA~D---A~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~----------dl~~~l~ 96 (700)
...++|||.||+| |+- .-.|.|+++.+ +.|+|.|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~AG~-----------------a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAGH-----------------CDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhcccccccccCC-----------------CCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4689999999999 431 23677777654 599999999999987 443 33
Q ss_pred HhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceE-EEEeCCCCCCCCCceEE
Q 045760 97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSF-TVTRDTSGELLGRGTKI 175 (700)
Q Consensus 97 tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~-~i~~~~~~~~~~~GT~I 175 (700)
..++|.+ | ....-.-.-|..|+|..++-.++.+++|+|+..+. .|..+...+..- .+... +....+||+|
T Consensus 99 -~lhAggK-f----d~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 -VLHAGGK-F----DQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred -eecccCC-C----CCCcccccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc--CCcCCCCcEE
Confidence 3333332 1 11111225699999999999999999999986543 243333322110 11211 2235799999
Q ss_pred EEEeccchhhh----ccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 176 TLHLKEDQLEY----LEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 176 ~L~lk~~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
+... +..-| ++...|...++.++-..| .-|.+++
T Consensus 170 ~F~P--D~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~d 208 (756)
T PRK14939 170 RFWP--SPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKD 208 (756)
T ss_pred EEEE--CHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEec
Confidence 9953 33222 366788888988884432 4455553
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.97 E-value=3.4e-06 Score=95.78 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=78.8
Q ss_pred CchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHH
Q 045760 28 NKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFM 107 (700)
Q Consensus 28 ~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~ 107 (700)
+-..+++||+.|++||.++ .|.|.++-..-.+.|.|||+||+++||. .||+--..++ |.
T Consensus 21 sla~~VeElv~NSiDA~At------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~-~lg~ry~TSK--~h 79 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEAT------------------CVAVRVNMETFSVQVIDDGFGMGRDDLE-KLGNRYFTSK--CH 79 (1142)
T ss_pred HHHHHHHHHHhhccccCce------------------EEEEEecCceeEEEEEecCCCccHHHHH-HHHhhhhhhh--ce
Confidence 4456899999999999873 4555555567789999999999999998 4554222122 21
Q ss_pred HHHhcCCCCccccccccchhheeeecceEEEEEecCC-CceEEE--EEccCceEEEEeCCCCCCCCCceEEEEE
Q 045760 108 EALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQYIW--ESQAGGSFTVTRDTSGELLGRGTKITLH 178 (700)
Q Consensus 108 ~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~~~w--~s~~~~~~~i~~~~~~~~~~~GT~I~L~ 178 (700)
...........|..|-.++|.-=++. ++|+|++.+ ..++.. ...|...-.++.+ ..+...||+|+++
T Consensus 80 -~~ndl~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 80 -SVNDLENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred -eccccccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 11111234578889988888777766 556776533 223321 1122222222222 2456899999996
No 28
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.36 E-value=0.00034 Score=75.91 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=60.9
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
..+..||+||+.+.. ....+.|.+..+.+.-.|+|.|||.||+++++.+.+... ..+
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~-------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAF-VRM-------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCe-EeC--------
Confidence 367888889876642 112355555555555679999999999999988533221 100
Q ss_pred hcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLK 180 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk 180 (700)
+ ..-|.+|+|++-+-.+++.. +|.+.+... ....||+|++.+.
T Consensus 307 ----~-~~~~g~GlGL~i~~~i~~~~------------------gg~i~i~s~----~~~~Gt~~~i~~p 349 (356)
T PRK10755 307 ----D-SRYGGIGLGLSIVSRITQLH------------------HGQFFLQNR----QERSGTRAWVWLP 349 (356)
T ss_pred ----C-CCCCCcCHHHHHHHHHHHHC------------------CCEEEEEEC----CCCCeEEEEEEec
Confidence 0 11256899998776665521 123444431 1126899998875
No 29
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.36 E-value=0.00086 Score=57.25 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.+++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999752 012345555554444568999999999999888655432111
Q ss_pred hcCCCCccccccccchhheeeecc----eEEEEE
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAE----KVIVTA 140 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vad----kv~V~S 140 (700)
......+.+|+|++.+-.+++ .+.+.+
T Consensus 61 ---~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 61 ---SRSRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred ---CCCCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 112234688999998877776 455544
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.33 E-value=0.00065 Score=79.94 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=92.9
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhHhhhcC
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------NNLGTIARSG 102 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~tIa~S~ 102 (700)
...+.|+|.||+|=.-. . ..-.|.|.+++ ++.|+|.|||-||+.+--. ..+.+..++|
T Consensus 36 ~hlv~EIvdNavDE~~a-g-------------~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG 100 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA-G-------------YADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG 100 (637)
T ss_pred heehhhhhcchhhhhhc-C-------------CCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc
Confidence 35688999999994321 0 12367777774 4689999999999864111 1111222232
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCC-ceEEEEEccCceEEEEeCC-CCCCCCCceEEEEEec
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDD-EQYIWESQAGGSFTVTRDT-SGELLGRGTKITLHLK 180 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~-~~~~w~s~~~~~~~i~~~~-~~~~~~~GT~I~L~lk 180 (700)
.+ | ..+.-.-.-|.-|||.-.+=.++++++|.++..+. -...|+..+. .+.+.. .+....+||+|+....
T Consensus 101 gk-f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~---~~~~l~~~~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 101 GK-F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGK---IVQSLKKIGTTKKTGTLVHFHPD 172 (637)
T ss_pred Cc-C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCc---CcCCcccccCCCCCceEEEEEeC
Confidence 21 1 01111224599999999999999999999986432 1223432111 111110 1233579999988755
Q ss_pred cchh--hhccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 181 EDQL--EYLEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 181 ~~~~--e~l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
.... .-++.+.|+.-++..+-..| .-|.+++
T Consensus 173 ~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 173 PTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred HHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 4321 11366778888888775443 5666654
No 31
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.29 E-value=0.001 Score=57.78 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=54.1
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.++.||+.||.++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 3578888998888642 12456666655555679999999999998888655432211 1
Q ss_pred hcCCCCccccccccchhheeeecceE
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAEKV 136 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vadkv 136 (700)
......++.|+|++.+-.++.+.
T Consensus 66 ---~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 ---GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred ---CCCCCCCcccccHHHHHHHHHHc
Confidence 11234567999999887776643
No 32
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.18 E-value=0.00066 Score=80.82 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
.+.+||+||.++... ...+.|++..+.+.-.|+|.|||.||+++.+...+..-..+++
T Consensus 583 vl~nLl~NAik~~~~--------------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~-------- 640 (679)
T TIGR02916 583 VLGHLVQNALEATPG--------------EGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK-------- 640 (679)
T ss_pred HHHHHHHHHHHhCCC--------------CCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC--------
Confidence 678999999888631 1234555544444456899999999999985554433222211
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
. +..|+|++.+-.+++
T Consensus 641 ----~---~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 641 ----G---AGMGIGVYECRQYVE 656 (679)
T ss_pred ----C---CCcchhHHHHHHHHH
Confidence 1 567999988866644
No 33
>PRK10604 sensor protein RstB; Provisional
Probab=97.17 E-value=0.0007 Score=76.05 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=49.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++..||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+...
T Consensus 323 vl~NLl~NAik~~~----------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~-------- 378 (433)
T PRK10604 323 VLDNLLNNALRYAH----------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDP-------- 378 (433)
T ss_pred HHHHHHHHHHHhCC----------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCC--------
Confidence 67888888887642 235566666655567999999999999998865543322110
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
.....-|.+|+|++-+-.+++
T Consensus 379 --~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 379 --SRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred --CCCCCCCCccchHHHHHHHHH
Confidence 111223678999976654444
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.03 E-value=0.0014 Score=73.50 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=48.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++..||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+++++.+.+...-++ .
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~-~-------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRT-E-------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccC-C--------
Confidence 56677888777642 112344555444444568999999999999888544332211 1
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
.......|..|+|++-+-.+++
T Consensus 413 -~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 413 -GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred -CCcCCCCCCCcHHHHHHHHHHH
Confidence 0112244678999987665554
No 35
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.03 E-value=0.0014 Score=73.33 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=48.8
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.++..||+||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-+. .+
T Consensus 320 ~vl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-~~------ 378 (430)
T PRK11006 320 SAISNLVYNAVNHTPE--------------GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRV-DK------ 378 (430)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccc-cC------
Confidence 3678899999888531 12234444444444569999999999999988544322111 00
Q ss_pred hcCCCCccccccccchhheeeecc
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
......|..|+|++-|-.++.
T Consensus 379 ---~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 379 ---ARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred ---CCCCCCCCCchHHHHHHHHHH
Confidence 011223567999987765543
No 36
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.98 E-value=0.0018 Score=72.20 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=49.8
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
..|..|+.||.++..... .....|.|.. ..+.-.|+|.|||+||+.+...+.|-... +++
T Consensus 390 ~vl~Nl~~NAik~~~~~~------------~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~~----- 451 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIKG------------WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TTK----- 451 (494)
T ss_pred HHHHHHHHHHHHHhhccC------------CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-ccC-----
Confidence 378999999999985310 0123455544 33445699999999999988875543321 111
Q ss_pred HHhcCCCCccccccccchhheeeecc
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
. ...+.-|+|++.+-.+++
T Consensus 452 ------~-~~~~G~GlGL~i~~~iv~ 470 (494)
T TIGR02938 452 ------G-GSRKHIGMGLSVAQEIVA 470 (494)
T ss_pred ------C-CCCCCCcccHHHHHHHHH
Confidence 1 114567899987765543
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.97 E-value=0.0017 Score=72.17 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||..+.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+...-++..
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 57778888776642 11234455444444446999999999999988865544322211
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEe
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
.....-+..|+|++-+--++++. +|.+.+.. .+.||+|++.+
T Consensus 415 --~~~~~~~g~GlGL~i~~~~~~~~------------------~G~~~~~~------~~~G~~~~~~~ 456 (457)
T TIGR01386 415 --ARSNSGEGTGLGLAIVRSIMEAH------------------GGRASAES------PDGKTRFILRF 456 (457)
T ss_pred --ccCCCCCCccccHHHHHHHHHHC------------------CCEEEEEe------CCCceEEEEec
Confidence 00112356899998876555421 23444443 24688888875
No 38
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.96 E-value=0.0016 Score=72.65 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++++||+||..+.. ..+.|++..+.+.-.|+|.|||+||+.+++...+...- ++..
T Consensus 357 ~l~nli~NA~~~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~-~~~~------- 412 (461)
T PRK09470 357 ALENIVRNALRYSH----------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFY-RVDE------- 412 (461)
T ss_pred HHHHHHHHHHHhCC----------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCc-cCCc-------
Confidence 58888999886641 23566666665556799999999999998885443221 1110
Q ss_pred cCCCCccccccccchhheeee
Q 045760 112 AGADVSMIGQFGVGFYSAYLV 132 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~v 132 (700)
.....-+.+|+|++-+=.+
T Consensus 413 --~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 413 --ARDRESGGTGLGLAIVENA 431 (461)
T ss_pred --ccCCCCCCcchhHHHHHHH
Confidence 1112346789999765443
No 39
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.96 E-value=0.0024 Score=71.21 Aligned_cols=101 Identities=23% Similarity=0.181 Sum_probs=60.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
.+.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..+..
T Consensus 372 vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~-~~~~~-------- 428 (475)
T PRK11100 372 ALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFER-FYSLP-------- 428 (475)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHH-HccCC--------
Confidence 57888888887642 11234455554444556999999999999988854432 22211
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLK 180 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk 180 (700)
.....-+..|+|++.|-.++... +|.+.+... .+.||+|++.+.
T Consensus 429 --~~~~~~~~~GlGL~i~~~~~~~~------------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 429 --RPANGRKSTGLGLAFVREVARLH------------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred --CCCCCCCCcchhHHHHHHHHHHC------------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 00112245799998876654421 223444431 246999988864
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.87 E-value=0.0028 Score=72.38 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=48.4
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.++.+|+.||.+|... .....+.|++..+.+.-.|+|.|||.||+.+++.+.+.. +.|++
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~~------- 495 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYSTK------- 495 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCccC-------
Confidence 3678999999999742 011234444444444456899999999999988865532 22211
Q ss_pred hcCCCCccccccccchhheeeecc
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
-+..|+|++.+-.+++
T Consensus 496 --------~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 496 --------GSNRGVGLYLVKQSVE 511 (542)
T ss_pred --------CCCCcCcHHHHHHHHH
Confidence 1346999987665544
No 41
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.82 E-value=0.0023 Score=73.27 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=59.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...+.. ...+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~-f~~~--------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDR-GQRA--------- 435 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCC-cccC---------
Confidence 67778888877763 124555555444456999999999999998754432 1110
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
+ ..-+..|+|++-|--+++.. +|.+.+... .+.||++++.++.
T Consensus 436 ---~-~~~~G~GLGL~Ivk~iv~~~------------------gG~i~v~s~-----~~~Gt~f~i~lp~ 478 (485)
T PRK10815 436 ---D-TLRPGQGLGLSVAREITEQY------------------EGKISAGDS-----PLGGARMEVIFGR 478 (485)
T ss_pred ---C-CCCCCcchhHHHHHHHHHHc------------------CCEEEEEEC-----CCCEEEEEEEEcC
Confidence 0 11135799998776665421 233444431 2468999888764
No 42
>PRK10364 sensor protein ZraS; Provisional
Probab=96.81 E-value=0.0028 Score=71.38 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=47.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
.+..||.||++|... ...+.|.+..+.+.-.|+|.|||.||+.+.+.+.+.. +.+++
T Consensus 352 il~NLl~NA~k~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~k-------- 408 (457)
T PRK10364 352 VLLNLYLNAIQAIGQ--------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTP-YFTTK-------- 408 (457)
T ss_pred HHHHHHHHHHHhcCC--------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCc-cccCC--------
Confidence 577888899998631 1234555555555567999999999999988854422 22211
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
-+..|+|++-+-.+++
T Consensus 409 -------~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 409 -------AEGTGLGLAVVHNIVE 424 (457)
T ss_pred -------CCCCcccHHHHHHHHH
Confidence 1246999987655544
No 43
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.78 E-value=0.0027 Score=66.84 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=47.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+.+... ...+.|.+....+.-.|.|.|||.||+.+.+...+....+. ..
T Consensus 233 vl~nll~Nai~~~~~--------------~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~-~~------- 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE--------------GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRV-DK------- 290 (333)
T ss_pred HHHHHHHHhheeCCC--------------CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceec-Cc-------
Confidence 688899998877521 12234444444444569999999999999887544322111 10
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
......+..|+|++.|-.+++
T Consensus 291 --~~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 291 --SRSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred --ccccCCCCCcccHHHHHHHHH
Confidence 001122456999988766553
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.76 E-value=0.0031 Score=69.73 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCC-CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTN-NSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~-~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
++..||.||+.+... ...|.|.. ..+. -.|+|.|||.||+.+++.+.|...- +.+
T Consensus 276 vl~NLl~NAik~~~~----------------~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~-~~~----- 333 (380)
T PRK09303 276 VLLNLLDNAIKYTPE----------------GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRV-RLP----- 333 (380)
T ss_pred HHHHHHHHHHhcCCC----------------CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCce-eCC-----
Confidence 678888998877531 23455543 2222 4589999999999998885443211 110
Q ss_pred HHhcCCCCccccccccchhheeeecc
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
.....+..|+|++-|..+++
T Consensus 334 ------~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 334 ------RDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred ------CCCCCCcccccHHHHHHHHH
Confidence 11123568999988776654
No 45
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.74 E-value=0.0023 Score=78.22 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|..||+||+.+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+.+...- .+
T Consensus 517 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~--------- 571 (921)
T PRK15347 517 ILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFY-QA--------- 571 (921)
T ss_pred HHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcc-cC---------
Confidence 67788888887652 123455554444445689999999999999885443211 10
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
+ ...|..|+|++-|-.++.
T Consensus 572 ---~-~~~~g~GLGL~i~~~~~~ 590 (921)
T PRK15347 572 ---D-THSQGTGLGLTIASSLAK 590 (921)
T ss_pred ---C-CCCCCCchHHHHHHHHHH
Confidence 1 122568999976655443
No 46
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.70 E-value=0.005 Score=72.20 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=89.0
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH----------HHhHhhh
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVN----------NLGTIAR 100 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~----------~l~tIa~ 100 (700)
..+.|+|-||+|-... ++. ...-.|.|.++ ++.|+|.|||-||+-+--.. .+.++.+
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 3567999999996421 110 11346777777 67899999999998643211 1112233
Q ss_pred cCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCc-eEEEEEccCceEEEEeCCCCCCCCCceEEEEEe
Q 045760 101 SGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDE-QYIWESQAGGSFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 101 S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~-~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
+|.+ | . +.-.-.-|.-|||.-.+=.++.+++|+++.++.. ...|.. | . ...+.+.+....+||+|+...
T Consensus 115 aGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~-G--~-~~~~~~~~~~~~~GT~V~F~P 184 (602)
T PHA02569 115 AGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN-G--A-ENISWSTKPGKGKGTSVTFIP 184 (602)
T ss_pred cccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC-C--c-ccCCcccCCCCCCccEEEEEE
Confidence 3321 2 1 1112246999999988889999999988543311 223321 2 1 111111123457999998875
Q ss_pred ccchh---hhc--cHHHHHHHHHHHhCCC-CcceEEeee
Q 045760 180 KEDQL---EYL--EERRLKDLIKKHSEFI-SYPISLWIE 212 (700)
Q Consensus 180 k~~~~---e~l--~~~~i~~ii~~ys~~l-~~PI~l~~~ 212 (700)
..... .|- ....|..-++..+-.. ..-|.++++
T Consensus 185 D~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 185 DFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred CHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 54321 121 1345555666655333 366777653
No 47
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.69 E-value=0.0031 Score=77.22 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=46.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
.+..||+||+.+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+.+...-+.
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV---------- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC----------
Confidence 67888889887752 12344554444444569999999999999988654322110
Q ss_pred cCCCCccccccccchhheeeec
Q 045760 112 AGADVSMIGQFGVGFYSAYLVA 133 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~va 133 (700)
....|..|+|++-|-.++
T Consensus 620 ----~~~~~g~GLGL~i~~~l~ 637 (914)
T PRK11466 620 ----SGKRGGTGLGLTISSRLA 637 (914)
T ss_pred ----CCCCCCCcccHHHHHHHH
Confidence 012367899998765544
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.65 E-value=0.0052 Score=70.68 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=49.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
.+.+||.||++|+.+. + .....|.|.. +.+.-.|.|.|||.||+.++..+.+.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5889999999998531 0 1123455544 333345899999999999988854432 22221
Q ss_pred HhcCCCCccccccccchhheeeecc
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
... -|..|+|++-+-.+++
T Consensus 497 -----~~~-~~g~GlGL~ivk~iv~ 515 (545)
T PRK15053 497 -----ADE-PGEHGIGLYLIASYVT 515 (545)
T ss_pred -----CCC-CCCceeCHHHHHHHHH
Confidence 111 2456999988766654
No 49
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.61 E-value=0.0048 Score=75.97 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=50.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
++..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+.|....+.
T Consensus 583 il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA--------- 638 (968)
T ss_pred HHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc---------
Confidence 78899999998752 12356666665555 679999999999999988655432211
Q ss_pred hcCCCCccccccccchhheeeec
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVA 133 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~va 133 (700)
......|..|+|++-|-.++
T Consensus 639 ---~~~~~~~g~GLGL~i~~~l~ 658 (968)
T TIGR02956 639 ---DGRRRSGGTGLGLAISQRLV 658 (968)
T ss_pred ---CCCCCCCCccHHHHHHHHHH
Confidence 11122367899998665443
No 50
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.59 E-value=0.011 Score=74.29 Aligned_cols=161 Identities=16% Similarity=0.251 Sum_probs=94.3
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------H-HHhHhhhcC
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------N-NLGTIARSG 102 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~-~l~tIa~S~ 102 (700)
-.+-|+|-||+|-... ++ ..-.|.|+++.+++.|+|.|||-||+-+--. . .|++.-.||
T Consensus 80 kifdEIldNAvDe~~r-------~g------~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGg 146 (1465)
T PLN03237 80 KIFDEILVNAADNKQR-------DP------KMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSS 146 (1465)
T ss_pred hhHHHHhhhhHhHHhh-------cC------CCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccc
Confidence 4688999999997521 11 2347888888778899999999999864211 1 123333333
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceE--EEEEccC-ceE-EEEeCCCCCCCCCceEEEE
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQY--IWESQAG-GSF-TVTRDTSGELLGRGTKITL 177 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~--~w~s~~~-~~~-~i~~~~~~~~~~~GT~I~L 177 (700)
+ | ..+...-.-|+-|||...+=.++.+++|+++.+ .+..| .|+.+.+ ..- .+.. .....+||+|+.
T Consensus 147 k--F----dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~VtF 217 (1465)
T PLN03237 147 N--Y----DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTKVTF 217 (1465)
T ss_pred c--C----CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceEEEE
Confidence 2 2 111112346999999999999999999999732 12233 4553212 110 1221 122369999987
Q ss_pred Eeccchh--hhccHHHHHHHHHHH---hCCC--CcceEEeeec
Q 045760 178 HLKEDQL--EYLEERRLKDLIKKH---SEFI--SYPISLWIEK 213 (700)
Q Consensus 178 ~lk~~~~--e~l~~~~i~~ii~~y---s~~l--~~PI~l~~~~ 213 (700)
.-..... .-++.+.|..+.++. +-|+ ..-|+|+++.
T Consensus 218 ~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 218 KPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 6433221 113556665444443 4466 3677777653
No 51
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.52 E-value=0.0052 Score=68.35 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++..||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++.+.+....+ +.
T Consensus 335 il~NLl~NA~k~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~-~~-------- 389 (435)
T PRK09467 335 ALANLVVNAARYGN----------------GWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTR-GD-------- 389 (435)
T ss_pred HHHHHHHHHHHhCC----------------CeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCccc-CC--------
Confidence 46666677664431 234555554444456999999999999998865433211 10
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
... --+.+|+|++-+-.+++
T Consensus 390 --~~~-~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 390 --SAR-GSSGTGLGLAIVKRIVD 409 (435)
T ss_pred --CCC-CCCCeehhHHHHHHHHH
Confidence 011 12568899977655544
No 52
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.52 E-value=0.0055 Score=70.08 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNNL 95 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l 95 (700)
++.+||.||+.+... ...+.|.+..+.+. -.|.|.|||+||+.+.+...+
T Consensus 504 ~~~nli~na~~~~~~--------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAISA--------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhcC--------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 577888888877531 12344444444444 679999999999999887543
No 53
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.45 E-value=0.012 Score=73.15 Aligned_cols=128 Identities=19% Similarity=0.251 Sum_probs=76.6
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------H-HHhHhhhcC
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------N-NLGTIARSG 102 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~-~l~tIa~S~ 102 (700)
-.+-|+|-||+|-... ++ ..-.|.|+++.+++.|+|.|||-||+-+--. . .|++.-.||
T Consensus 55 ki~dEIldNAvDe~~~-------~g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGg 121 (1135)
T PLN03128 55 KIFDEILVNAADNKQR-------DP------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSS 121 (1135)
T ss_pred HHHHHHHHHHHHHhhh-------cC------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecccc
Confidence 3688999999997521 11 1247888888777899999999999864211 1 122333333
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceE--EEEEcc-Cce-EEEEeCCCCCCCCCceEEEE
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQY--IWESQA-GGS-FTVTRDTSGELLGRGTKITL 177 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~--~w~s~~-~~~-~~i~~~~~~~~~~~GT~I~L 177 (700)
+ | ..+.-.-.-|+-|||...+=.++.+++|+++.+ ++..| .|+... ... -.+.. .....+||+|+.
T Consensus 122 k--F----dd~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~---~~~~~~GT~ItF 192 (1135)
T PLN03128 122 N--F----DDNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITS---CKASENWTKITF 192 (1135)
T ss_pred c--c----CCccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceecc---CCCCCCceEEEE
Confidence 3 2 111112356999999999999999999999732 22223 343210 001 01111 112358999988
Q ss_pred Eec
Q 045760 178 HLK 180 (700)
Q Consensus 178 ~lk 180 (700)
...
T Consensus 193 ~PD 195 (1135)
T PLN03128 193 KPD 195 (1135)
T ss_pred EEC
Confidence 754
No 54
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.013 Score=67.68 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=98.7
Q ss_pred chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhHhhh
Q 045760 29 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD--------LVNNLGTIAR 100 (700)
Q Consensus 29 ~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~tIa~ 100 (700)
....+.|.|-||+|---. + ..-.|.|+++ .++.|+|.|||-||+-+- +.-.|..+-.
T Consensus 37 LhHlv~EVvDNsiDEala------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHhh------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 456788999999996421 1 2336777776 568999999999998764 2222222222
Q ss_pred cCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEE-ccCceEEEEeCCCCCCCCCceEEEEEe
Q 045760 101 SGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWES-QAGGSFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 101 S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s-~~~~~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
+|+-+ .+.-.-.=|.-|||.--+=.++++++|.++..+ .-|.-.- .|...-.+..........+||+|+..-
T Consensus 102 GGKFd------~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g-k~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~P 174 (635)
T COG0187 102 GGKFD------NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG-KIYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKP 174 (635)
T ss_pred CcccC------CCccEeecCCCccceEEEecccceEEEEEEECC-EEEEEEEeCCCcCCCceecccCCCCCCccEEEEEc
Confidence 33311 110012348999999888899999999998753 2222221 222111222211123457899998875
Q ss_pred ccch---hhhccHHHHHHHHHHHhCCCC-cceEEeeec
Q 045760 180 KEDQ---LEYLEERRLKDLIKKHSEFIS-YPISLWIEK 213 (700)
Q Consensus 180 k~~~---~e~l~~~~i~~ii~~ys~~l~-~PI~l~~~~ 213 (700)
.+.. .+ .+...|+.-++.++=..+ .-|.++++.
T Consensus 175 D~~iF~~~~-f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 175 DPEIFGETE-FDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred ChHhcCCcc-cCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 4432 22 367788888888877665 778887643
No 55
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.40 E-value=0.016 Score=73.06 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=93.5
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhHhhhcC
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV--------NNLGTIARSG 102 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~--------~~l~tIa~S~ 102 (700)
-.+-|+|-||+|-..+ ++ .....-.|.|+++.+.+.|+|.|||-||+-+--. -.|++.-.||
T Consensus 60 ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 60 KIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 4688999999997531 10 0112347888888777899999999999864211 1233333343
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCC-Cce--EEEEEccC--ceEEEEeCCCCCCCCCceEEEE
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQ--YIWESQAG--GSFTVTRDTSGELLGRGTKITL 177 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~--~~w~s~~~--~~~~i~~~~~~~~~~~GT~I~L 177 (700)
+ | ..+...-.-|+-|||...+=.++.+++|+++.+. +.. -.|+.... ..-.|.. .....+||+|+.
T Consensus 130 k--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~---~~~~~~GT~VtF 200 (1388)
T PTZ00108 130 N--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITS---YDGKKDYTKVTF 200 (1388)
T ss_pred c--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCC---CCCCCCceEEEE
Confidence 3 1 1111123569999999999999999999998651 222 34543210 1112221 111168999988
Q ss_pred Eeccchh--hhccHHH---HHHHHHHHhCCCC-cceEEeee
Q 045760 178 HLKEDQL--EYLEERR---LKDLIKKHSEFIS-YPISLWIE 212 (700)
Q Consensus 178 ~lk~~~~--e~l~~~~---i~~ii~~ys~~l~-~PI~l~~~ 212 (700)
....... .-++.+. |..-++..+-..+ .-|+++++
T Consensus 201 ~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 201 YPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 7543221 1124444 4555555554443 56666653
No 56
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.31 E-value=0.01 Score=71.71 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=52.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD-KTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
++..||.||.++.. ...+.|.+... .+.-.|+|.|||+||+.+++.+-|...-+. +
T Consensus 402 vl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~------- 458 (779)
T PRK11091 402 ILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-K------- 458 (779)
T ss_pred HHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-c-------
Confidence 67899999988752 12355666555 233468999999999999988655432211 0
Q ss_pred hcCCCCccccccccchhheeeec----ceEEEEEe
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVA----EKVIVTAK 141 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~va----dkv~V~Sk 141 (700)
........|.-|+|+.-|-.++ -++.|.|.
T Consensus 459 -~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~ 492 (779)
T PRK11091 459 -DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE 492 (779)
T ss_pred -CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec
Confidence 0112223466789987665443 34555544
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.30 E-value=0.0093 Score=71.53 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=49.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++..||.||..+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+... .+++.
T Consensus 601 il~NLI~NAik~s~~--------------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~~------- 658 (703)
T TIGR03785 601 MLDKLVDNAREFSPE--------------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVRD------- 658 (703)
T ss_pred HHHHHHHHHHHHCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecCC-------
Confidence 577888898887631 12345555554444569999999999999888544332 11110
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
....--+..|+|++-|-.+++
T Consensus 659 --~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 --QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred --CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999988766654
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=96.20 E-value=0.01 Score=66.26 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=45.5
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+++.||.||+.+.. ....|.|.... ..|+|.|||.||+++++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 67888888887752 11245554432 379999999999999988654332111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
+..-.+..|+|+.-|-.+++
T Consensus 408 ---~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 ---PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred ---CCCCCCccchHHHHHHHHHH
Confidence 11122468999977655544
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.11 E-value=0.012 Score=71.89 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc---------------CCCCEEEEEeCCCCCCHHHHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD---------------KTNNSLSIIDSGIGMTKADLVNNLG 96 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~~dl~~~l~ 96 (700)
.+..||+||+.++.. ...+.|.+... .+.-.|.|.|||+||+.+++.+.+.
T Consensus 564 vl~NLl~NAik~~~~--------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe 629 (828)
T PRK13837 564 VLMNLCSNAAQAMDG--------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFE 629 (828)
T ss_pred HHHHHHHHHHHHccc--------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhC
Confidence 688999999988741 12344554443 1223589999999999998875432
Q ss_pred HhhhcCchhHHHHHhcCCCCccccccccchhheeeec----ceEEEEEec
Q 045760 97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVA----EKVIVTAKH 142 (700)
Q Consensus 97 tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~va----dkv~V~Sk~ 142 (700)
. ..++ . . |..|+|++.|-.++ -++.|.|..
T Consensus 630 ~-F~~~------------~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 630 P-FFTT------------R-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred C-cccC------------C-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 2 1110 1 1 67899998765543 446666543
No 60
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.11 E-value=0.014 Score=66.34 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=49.6
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
+.|.=||.||.||..+ ..+.-.|.+.+ +.+.-.|.|.|||+||+++... .+...|.|++.
T Consensus 430 tIlGNLidNA~eA~~~-------------~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~-~iFe~G~Stk~---- 491 (537)
T COG3290 430 TILGNLIDNALEALLA-------------PEENKEIELSLSDRGDELVIEVADTGPGIPPEVRD-KIFEKGVSTKN---- 491 (537)
T ss_pred HHHHHHHHHHHHHhhc-------------cCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHH-HHHhcCccccC----
Confidence 3677799999999963 01223455544 3333458999999999998887 44455666431
Q ss_pred HHhcCCCCccccccccchhheeee
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLV 132 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~v 132 (700)
.|..|+|+|-+=..
T Consensus 492 ----------~~~rGiGL~Lvkq~ 505 (537)
T COG3290 492 ----------TGGRGIGLYLVKQL 505 (537)
T ss_pred ----------CCCCchhHHHHHHH
Confidence 47889999865444
No 61
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.00 E-value=0.014 Score=71.39 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc--CCC---CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD--KTN---NSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 106 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d--~~~---~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f 106 (700)
.+..||+||+.+... ..+.|.+... .++ -.|.|.|||+||+++++.+.+-..-+...
T Consensus 412 vl~NLl~NAik~~~~---------------g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--- 473 (919)
T PRK11107 412 IITNLVGNAIKFTES---------------GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA--- 473 (919)
T ss_pred HHHHHHHHHhhcCCC---------------CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC---
Confidence 678899998877531 2344555432 221 24899999999999998865433221110
Q ss_pred HHHHhcCCCCccccccccchhheeeec----ceEEEEEec
Q 045760 107 MEALAAGADVSMIGQFGVGFYSAYLVA----EKVIVTAKH 142 (700)
Q Consensus 107 ~~~~~~~~~~~~IG~FGIGf~S~F~va----dkv~V~Sk~ 142 (700)
......|..|+|++-|-.++ -++.|.|..
T Consensus 474 -------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 474 -------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred -------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 11123467899998665543 345565543
No 62
>PRK10490 sensor protein KdpD; Provisional
Probab=95.92 E-value=0.016 Score=71.43 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=47.3
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++..||+||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+... .++.
T Consensus 782 VL~NLL~NAik~s~~--------------g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~~-------- 838 (895)
T PRK10490 782 VLINLLENAVKYAGA--------------QAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF-ARGN-------- 838 (895)
T ss_pred HHHHHHHHHHHhCCC--------------CCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC-ccCC--------
Confidence 678899998877521 12344444444444568999999999999887544321 1111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
.....+..|+|++-|-.+++
T Consensus 839 ---~~~~~~G~GLGL~Ivk~ive 858 (895)
T PRK10490 839 ---KESAIPGVGLGLAICRAIVE 858 (895)
T ss_pred ---CCCCCCCccHHHHHHHHHHH
Confidence 11123457899987655543
No 63
>PRK09835 sensor kinase CusS; Provisional
Probab=95.90 E-value=0.019 Score=64.58 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+++.||.||+.+.. ....+.|++..+.+.-.|.|.|||.||+.+++...+...-++..
T Consensus 379 vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~-------- 436 (482)
T PRK09835 379 AISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDP-------- 436 (482)
T ss_pred HHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC--------
Confidence 56777777776642 11234555555544457999999999999988854432211100
Q ss_pred cCCCCccccccccchhheeee
Q 045760 112 AGADVSMIGQFGVGFYSAYLV 132 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~v 132 (700)
.....-+..|+|++-+-.+
T Consensus 437 --~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 437 --SRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred --CCCCCCCCcchHHHHHHHH
Confidence 0111225679999655443
No 64
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.86 E-value=0.02 Score=70.45 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC---CCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT---NNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
++.-||+||..+... +.+.|.+..... .-.|+|.|||+||+.+++.+-+...-+ .+
T Consensus 569 VL~NLL~NAik~t~~---------------G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~----- 627 (894)
T PRK10618 569 ILLLLLNYAITTTAY---------------GKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QT----- 627 (894)
T ss_pred HHHHHHHHHHHhCCC---------------CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CC-----
Confidence 678899999887531 233444443322 235899999999999998864433211 11
Q ss_pred HHhcCCCCccccccccchhheeeec----ceEEEEEe
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVA----EKVIVTAK 141 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~va----dkv~V~Sk 141 (700)
.....-+..|+|+.-|-.++ -++.|.|.
T Consensus 628 -----~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~ 659 (894)
T PRK10618 628 -----QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSR 659 (894)
T ss_pred -----CCCCCCCCcChhHHHHHHHHHHcCCEEEEEEC
Confidence 01112245788887665443 34445443
No 65
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.86 E-value=0.016 Score=69.76 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=92.3
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhHhhhcCc
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV-------NNLGTIARSGT 103 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~-------~~l~tIa~S~~ 103 (700)
..+.|+|.||+|-.-. + ..-.|.|.+++ +..|+|.|||-||+-+.-. ....|+.++|.
T Consensus 132 hLv~EIlDNSVDE~la------------G--~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGG 196 (903)
T PTZ00109 132 QLLFEILDNSVDEYLA------------G--ECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGG 196 (903)
T ss_pred EEEEEEeeccchhhcc------------C--CCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccCc
Confidence 3678999999994321 1 12367777765 4789999999999864321 12223444443
Q ss_pred hhHHHHH---------------------------------hc-C-CC-CccccccccchhheeeecceEEEEEecCCCce
Q 045760 104 KEFMEAL---------------------------------AA-G-AD-VSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQ 147 (700)
Q Consensus 104 ~~f~~~~---------------------------------~~-~-~~-~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~ 147 (700)
+ |-... .. . .. .-.-|.-|||.-.+=.++.+++|.++.++. .
T Consensus 197 K-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK-~ 274 (903)
T PTZ00109 197 K-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK-I 274 (903)
T ss_pred c-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE-E
Confidence 2 21100 00 0 00 124689999998888999999999987532 2
Q ss_pred EEEEEccCceEEEEeCC-CCCC-CCCceEEEEEec-cchh-h-h--------------ccHHHHHHHHHHHhCCC-Ccce
Q 045760 148 YIWESQAGGSFTVTRDT-SGEL-LGRGTKITLHLK-EDQL-E-Y--------------LEERRLKDLIKKHSEFI-SYPI 207 (700)
Q Consensus 148 ~~w~s~~~~~~~i~~~~-~~~~-~~~GT~I~L~lk-~~~~-e-~--------------l~~~~i~~ii~~ys~~l-~~PI 207 (700)
|.-+... |. .+.+.. .+.. ..+||+|+.... +.-. . . ++.+.|+.-++.++-.. ..-|
T Consensus 275 y~q~F~r-G~-~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I 352 (903)
T PTZ00109 275 YSIELSK-GK-VTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTF 352 (903)
T ss_pred EEEEeCC-Cc-ccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEE
Confidence 2222221 11 111110 0122 468999988755 4311 1 1 25567888888887444 3566
Q ss_pred EEee
Q 045760 208 SLWI 211 (700)
Q Consensus 208 ~l~~ 211 (700)
.+++
T Consensus 353 ~L~D 356 (903)
T PTZ00109 353 YLVD 356 (903)
T ss_pred EEEe
Confidence 6664
No 66
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.82 E-value=0.018 Score=71.16 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=47.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
.+.-||+||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+.+...-+...
T Consensus 566 vl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~-------- 622 (924)
T PRK10841 566 VISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT-------- 622 (924)
T ss_pred HHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC--------
Confidence 68889999887742 1234555555444456899999999999998865433211110
Q ss_pred cCCCCccccccccchhheeeec
Q 045760 112 AGADVSMIGQFGVGFYSAYLVA 133 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~va 133 (700)
......+..|+|++-|-.++
T Consensus 623 --~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 623 --GVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred --CCCCCCCCeehhHHHHHHHH
Confidence 01112356789998765554
No 67
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.58 E-value=0.035 Score=52.03 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=29.4
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCC
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMT 87 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 87 (700)
.++.||++||..+. +. . .....+.|.+....+.-.|.|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 57899999988542 10 0 01123445555544445689999999997
No 68
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.47 E-value=0.016 Score=56.47 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=53.0
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
..++.|++.||+...-+. .....+.|.+....+.-.|.|.|+|.||+.+.+...+.. .. ..
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p-~~-~~------ 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP-YD-IS------ 104 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC-CC-CC------
Confidence 358999999999987420 011335566555655567999999999997766532211 00 00
Q ss_pred HhcCCCCccccccccchhheeeecceEEEEE
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEKVIVTA 140 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadkv~V~S 140 (700)
.....-..-|+|++-+-.++|++.+.+
T Consensus 105 ----~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ----KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ----CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 001111123778877767788877654
No 69
>PRK03660 anti-sigma F factor; Provisional
Probab=95.39 E-value=0.056 Score=51.13 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=30.5
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTK 88 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 88 (700)
..++.|++.||+...- . . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~~----~---~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHGY----E---N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHhc----C---C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 3578999999885531 0 0 001234555555444456899999999984
No 70
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.35 E-value=0.055 Score=64.35 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHhcHHhHHHh----hhhhhccCCCccCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHHH
Q 045760 33 LRELISNSSDALDK----IRFESLTDKSKLDAQPELFIHIIPD--KTNNSLSIIDSGIGMTKADLVN 93 (700)
Q Consensus 33 lRELIqNA~DA~~k----~~~~~l~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~dl~~ 93 (700)
|..||.||+|++-. |... +......|.|... .+.-.|+|.|||.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~--------gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAA--------GKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhc--------CCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999999732 1111 1112334555543 3334589999999999988764
No 71
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.24 E-value=0.027 Score=65.64 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=28.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKA 89 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 89 (700)
.++|+|+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha~---------------a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHAQ---------------ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 57888888766531 12345555555444569999999999974
No 72
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=95.09 E-value=0.044 Score=69.44 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE---cCCC--CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP---DKTN--NSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 106 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f 106 (700)
++..||.||+++... ..+.|.+.. +.+. -.|+|.|||+||+.+++.+.+.... .++
T Consensus 832 vl~NLl~NAik~~~~---------------g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~-~~~--- 892 (1197)
T PRK09959 832 VLSNLLSNALKFTTE---------------GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYS-QTS--- 892 (1197)
T ss_pred HHHHHHHHHHHhCCC---------------CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccc-ccc---
Confidence 688999999998641 123444432 2222 2479999999999998885443221 111
Q ss_pred HHHHhcCCCCccccccccchhheeeecc
Q 045760 107 MEALAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 107 ~~~~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
....-+..|+|++-|-.+++
T Consensus 893 --------~~~~~~G~GLGL~i~~~iv~ 912 (1197)
T PRK09959 893 --------AGRQQTGSGLGLMICKELIK 912 (1197)
T ss_pred --------cCCCCCCcCchHHHHHHHHH
Confidence 11123468999987765543
No 73
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.02 E-value=0.057 Score=58.11 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=32.5
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC------------CCEEEEEeCCCCCCHHHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT------------NNSLSIIDSGIGMTKADLVNN 94 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~------------~~~l~I~DnGiGMt~~dl~~~ 94 (700)
.+++.||+||+.|... ....|.|..... .-.|.|.|||.||+.+.+...
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i 300 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL 300 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc
Confidence 3688999999999731 122344433111 125899999999999877643
No 74
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=94.99 E-value=0.029 Score=64.54 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKA 89 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 89 (700)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46788888776642 12244444444444569999999999853
No 75
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.82 E-value=0.039 Score=63.34 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=38.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGT 97 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~t 97 (700)
+|-=|||||.||++. ...+.++|+..-+.+.-.|+|+|||.|+.++-+...|..
T Consensus 501 VLvNLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFeP 554 (603)
T COG4191 501 VLVNLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEP 554 (603)
T ss_pred HHHHHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCC
Confidence 566799999999962 112334444444555567999999999999988865543
No 76
>PRK13557 histidine kinase; Provisional
Probab=94.74 E-value=0.06 Score=61.16 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheee----ecceEEEEEec
Q 045760 76 SLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYL----VAEKVIVTAKH 142 (700)
Q Consensus 76 ~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~----vadkv~V~Sk~ 142 (700)
.|+|.|||.||+.+.....+... .+++ ...+..|+|++-+-. .+-++.|.|..
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~~~-~~~~-------------~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMDPF-FTTK-------------EEGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccCCC-cccC-------------CCCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 58999999999999877543221 1111 112467899876533 34456666654
No 77
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.52 E-value=0.049 Score=56.31 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=35.3
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNN 94 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~ 94 (700)
..+..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+...
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~i 279 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERI 279 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHh
Confidence 378999999999983 1234444444333357999999999999996643
No 78
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.44 E-value=0.065 Score=52.27 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=53.6
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
..++.|++.||+...-. . .....+.|.+..+.+.-.|.|.|+|.||+...+...+... .+.
T Consensus 44 ~lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~--~~~------ 104 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPY--DGS------ 104 (159)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCC--CCC------
Confidence 35899999999988631 0 1123355555555555568999999999877655322110 000
Q ss_pred HhcCCCCccccccccchhheeeecceEEEEE
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEKVIVTA 140 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadkv~V~S 140 (700)
........-|.|++-+=.++|.+.+.+
T Consensus 105 ----~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 ----EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234888888888889887765
No 79
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.17 E-value=0.14 Score=47.09 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=54.4
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
..++.|++.||+.+...- .....+.|++..+.+.-.|+|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 458999999999998420 01134566666777777899999999998875542110
Q ss_pred HhcCCCCccccccccchhheeeecceEEE
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEKVIV 138 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadkv~V 138 (700)
........-|.|++-+-.++|++.+
T Consensus 89 ----~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ----WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ----ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012334556777777778899988
No 80
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=93.74 E-value=0.17 Score=55.23 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=73.7
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
.-.+-||..||..|.=+..-. ++ ..-+++.|.|.-..++-+|.|+|-|=|++.+++.+.| .-..|.... .
T Consensus 262 ~ymlfElfKNamrATve~h~~---~~---~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf-~Y~ySTa~~---~ 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGD---DG---DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLF-SYMYSTAPA---P 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CC---CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHH-hhhcccCCC---C
Confidence 347899999999998643211 11 1135567777666677889999999999999988543 444554321 0
Q ss_pred HhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEeccchhhh
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKEDQLEY 186 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~~~~e~ 186 (700)
-.+.....+.--||.|+--+=.+|.-. + |...+.. -.+.||-+.++||....++
T Consensus 332 ~~d~~~~~plaGfG~GLPisrlYa~yf------~------------Gdl~L~S-----leG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 332 SSDNNRTAPLAGFGFGLPISRLYARYF------G------------GDLKLQS-----LEGIGTDVYIYLKALSMEA 385 (414)
T ss_pred CCCCCCcCcccccccCCcHHHHHHHHh------C------------CCeeEEe-----eeccccceEEEeccCCccc
Confidence 001111346677888874333332211 1 1112221 1368999999999765444
No 81
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.0055 Score=69.89 Aligned_cols=240 Identities=13% Similarity=-0.014 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHH----hCHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcE
Q 045760 388 LVKKCIELFQEIA----ENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDI 463 (700)
Q Consensus 388 l~~k~~~~l~~l~----~d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~I 463 (700)
|++++.+-|.+.+ .+...+..+|+.|-..+..++-+.-.......... ...........|.+++ .+.+++-..
T Consensus 357 i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~r 433 (656)
T KOG0019|consen 357 VLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVER 433 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHh
Confidence 3455555554444 36678999999999888888877766655555544 3333223446778888 566778888
Q ss_pred EEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCch-hHHhhHHHHHHHHHH
Q 045760 464 YYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESE-DEKKKKETLKEKFEG 542 (700)
Q Consensus 464 Yy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~-e~k~~~~~~~~e~~~ 542 (700)
++.+..+.-.+.....-.+-.+-++|++..-++.+.||++.+.+|....++......+-.-..+ .+....++.+.+...
T Consensus 434 m~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee 513 (656)
T KOG0019|consen 434 MREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEE 513 (656)
T ss_pred hcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHH
Confidence 8888888777777777777788899999999999999999999999999999888765432221 111111121222222
Q ss_pred HHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhh
Q 045760 543 LCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRA 622 (700)
Q Consensus 543 L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~ 622 (700)
...-++ .|-. .+..+|.+ +|+-|...+.++.++..++..+....+++...|.++...+.||.|-+.- .+..
T Consensus 514 ~k~efe-~lck-----~mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~l 584 (656)
T KOG0019|consen 514 SKKEFE-ELCK-----WMKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHL 584 (656)
T ss_pred HHHHHH-HHHH-----HHHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--ccee
Confidence 222222 2212 12357877 8888888889999999998877555566666788899999999998776 3344
Q ss_pred ccCCCchhHHHHHHHHH
Q 045760 623 DADKNDKSVKDLVLLLF 639 (700)
Q Consensus 623 ~~d~~~~~~~~~~~~Ly 639 (700)
+.+++.+.++++-....
T Consensus 585 EINP~hpivk~L~~~~~ 601 (656)
T KOG0019|consen 585 EINPDHPLVKTLRQLRE 601 (656)
T ss_pred eeCCCChHHHHHHHHHh
Confidence 55667777777765544
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.47 E-value=0.09 Score=62.92 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=75.1
Q ss_pred HHHHHHhcHHhHHH----hhhhhhccCCCccCCCCCceEEEEEcCCC-C-EEEEEeCCCCCCHHHHHHHHhHhhhcCchh
Q 045760 32 FLRELISNSSDALD----KIRFESLTDKSKLDAQPELFIHIIPDKTN-N-SLSIIDSGIGMTKADLVNNLGTIARSGTKE 105 (700)
Q Consensus 32 flRELIqNA~DA~~----k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~-~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~ 105 (700)
.|.=||-||+|.+- .|+. .+..+...|.+.....+ . .|+|+|+|-|++++-+.+.-..=|--+..+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 35678999999983 3332 24456778998875443 3 379999999999998776332111111100
Q ss_pred HHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEE-E-EccCceEEEEeCCCCCCCCCceEEEEEec
Q 045760 106 FMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIW-E-SQAGGSFTVTRDTSGELLGRGTKITLHLK 180 (700)
Q Consensus 106 f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w-~-s~~~~~~~i~~~~~~~~~~~GT~I~L~lk 180 (700)
.+.+ ++. -+.+ +=|.+.|.-+++|+=.|.++=+.-+.- . ..-+|...|.. ..++||+++|.|-
T Consensus 508 -a~~l---Sd~-Ei~~--LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 508 -AETL---SDE-EILN--LIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred -hccC---CHH-HHHH--HHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEe-----cCCCCeEEEEecC
Confidence 0001 111 1222 247788888898877776542211110 0 11246767765 2589999999976
No 83
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.98 E-value=0.3 Score=50.33 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN--NSLSIIDSGIGMTKA 89 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~ 89 (700)
++-||++||.-... +. .....++|.+..+.++ ..++|.|||.|++.+
T Consensus 126 iv~EL~tNa~Khaf------~~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAF------LS-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcC------CC-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 78999999987763 11 1223445555555554 579999999999853
No 84
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=90.97 E-value=0.47 Score=55.10 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=44.7
Q ss_pred ceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeec----ceEE
Q 045760 64 LFIHIIP--DKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVA----EKVI 137 (700)
Q Consensus 64 ~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~va----dkv~ 137 (700)
..|.|.. -++..++.|.|||+|++..-+.+-|.-.-+-+ ....+.| -|+|+.-|-.++ -++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~-----------s~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH-----------SRDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC-----------chhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 4566654 34567899999999999987775543322111 1223445 899998776654 3566
Q ss_pred EEEecCCCce
Q 045760 138 VTAKHNDDEQ 147 (700)
Q Consensus 138 V~Sk~~~~~~ 147 (700)
|.|+.+++..
T Consensus 725 vEs~~gEgsT 734 (750)
T COG4251 725 VESTPGEGST 734 (750)
T ss_pred EeecCCCcee
Confidence 6665443333
No 85
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=90.63 E-value=0.38 Score=55.73 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=40.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNN--SLSIIDSGIGMTKADLVNNLG 96 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~dl~~~l~ 96 (700)
++-=||+||.+|++.+... +.+...|+++.+..+. .+.|.|||.|++.+++.+.+.
T Consensus 604 vf~NliKNA~EAi~~~~~~---------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 604 VFGNLLKNAAEAIEAVEAE---------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHhHHHHhhhcccc---------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 4556899999999865321 1112267888765544 479999999999999886553
No 86
>PRK13560 hypothetical protein; Provisional
Probab=88.92 E-value=0.42 Score=57.26 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC---CCEEEEEeCCCCCCHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT---NNSLSIIDSGIGMTKA 89 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~ 89 (700)
.+.+|++||+.+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987531 11223555554322 2458999999999875
No 87
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=87.79 E-value=1.8 Score=41.75 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=53.6
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
.+++-|++.||+.+.-+. +| +..++.|.+..+.+.-.++|.|.|.|+. ++...++.-
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC-----------
Confidence 468999999999987431 11 1134566666677777799999996665 555444321
Q ss_pred HhcCCCCccccc---cccchhheeeecceEEEEEec
Q 045760 110 LAAGADVSMIGQ---FGVGFYSAYLVAEKVIVTAKH 142 (700)
Q Consensus 110 ~~~~~~~~~IG~---FGIGf~S~F~vadkv~V~Sk~ 142 (700)
....+. -|.||+-+=.+.|+|.+....
T Consensus 99 ------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 ------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred ------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 112222 277777766688988887543
No 88
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.15 E-value=0.44 Score=52.37 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=35.5
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL 91 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 91 (700)
-+++|.|+||.-... ...+.|++..+.+.-+|+|.|||.|.+.+..
T Consensus 282 rivQEaltN~~rHa~---------------A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 282 RIVQEALTNAIRHAQ---------------ATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHhccC---------------CceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 379999999987653 2356777777766678999999999997644
No 89
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=85.72 E-value=0.85 Score=52.18 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=31.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKA 89 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 89 (700)
.+||-++||.-.-. ...+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~---------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ---------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc---------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 68999999986542 12455666656566779999999999854
No 90
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=84.89 E-value=3.5 Score=49.67 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
+|-=||.||.-.. ....+++|.+..+.+.-.+.|.|||-|++.+++.+-|-...+.
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 5556788876543 1233456666667666779999999999999999877665544
No 91
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=81.88 E-value=2.2 Score=48.07 Aligned_cols=54 Identities=28% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK---TNNSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
++--|+-||+|||.. .++.|.+..+. +.-+|-|.|||-|...+=+. .|.+..++
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d-kLl~PFtt 624 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD-KLLTPFTT 624 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHH-HhcCCccc
Confidence 667899999999963 12567777654 33579999999999987666 45554433
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=78.42 E-value=4.7 Score=45.97 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=39.2
Q ss_pred CCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHH
Q 045760 26 YSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN--NSLSIIDSGIGMTKADLV 92 (700)
Q Consensus 26 Ys~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~ 92 (700)
+-+|...|-=||.||.-|+-+. ..+...|.|..-..+ -.+.|.|||+||++.-+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 3467778888999999999532 123456666653333 357999999999988766
No 93
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=76.56 E-value=2.2 Score=49.15 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=26.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD-KTNNSLSIIDSGIGMTK 88 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~ 88 (700)
.+.+|+.||+.+.. ...+.|.+... .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~~---------------~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHAN---------------ASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCC---------------CCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 56788888776531 12234444444 22345899999999985
No 94
>PRK13559 hypothetical protein; Provisional
Probab=76.02 E-value=2.3 Score=46.00 Aligned_cols=44 Identities=16% Similarity=0.010 Sum_probs=28.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCC--CEEEEEeCCCCCCH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTN--NSLSIIDSGIGMTK 88 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~--~~l~I~DnGiGMt~ 88 (700)
++.||+.||+.+... + .....|+|.+ ...+ -.|.|.|||.|++.
T Consensus 271 vl~nLi~NA~k~~~~------~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGAL------S-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhccc------c-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 788999999877421 0 1123555555 3323 46888999999654
No 95
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=74.18 E-value=5 Score=44.01 Aligned_cols=84 Identities=26% Similarity=0.431 Sum_probs=52.0
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEe
Q 045760 64 LFIHIIPDKTN--NSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAK 141 (700)
Q Consensus 64 ~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk 141 (700)
.+|.+....-. -.|+|.|.|.|++++|+.+-|-+.-+-.+ ......|--|+|++-+ .++ |
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLaIa----kei-V--- 423 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLAIA----KEI-V--- 423 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHHHH----HHH-H---
Confidence 46666665433 45899999999999999987765433221 1223568888998643 211 1
Q ss_pred cCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 045760 142 HNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLK 180 (700)
Q Consensus 142 ~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk 180 (700)
....|..|-... .+.||+|+.+|.
T Consensus 424 -~~hgG~iWA~s~--------------~gkgtt~~ftLP 447 (459)
T COG5002 424 -QAHGGRIWAESE--------------EGKGTTFSFTLP 447 (459)
T ss_pred -HHhCCeEEEecc--------------cCCceEEEEEec
Confidence 123467784321 356888887764
No 96
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=73.32 E-value=3.1 Score=50.02 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=55.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceE--EEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFI--HIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I--~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
++-|||.||+|-+..+.... . +..-.+..+| +...-...+ |.|||.||..+-+..++.... |.+.+
T Consensus 150 a~aeLldnalDEi~~~~tf~--~--vd~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~-~~k~e---- 217 (775)
T KOG1845|consen 150 AIAELLDNALDEITNGATFV--R--VDYINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGY-SSKKE---- 217 (775)
T ss_pred hhhhhccccccccccccceE--E--eeeecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhh-hhhhh----
Confidence 68999999999986432110 0 0000011111 111111111 678999999998887775543 33322
Q ss_pred HhcCCCCccccccccchhheee-ecceEEEEEec
Q 045760 110 LAAGADVSMIGQFGVGFYSAYL-VAEKVIVTAKH 142 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~-vadkv~V~Sk~ 142 (700)
-...+||+|.||.++.| ++-.+.|.+|.
T Consensus 218 -----~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 -----ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred -----hhhhhhhhccccccchhhhccceeEeehh
Confidence 13578999999987765 67777788873
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=72.62 E-value=5 Score=48.19 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=70.5
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhHhhhcCc
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV--------NNLGTIARSGT 103 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~--------~~l~tIa~S~~ 103 (700)
..-|.+-||.| -. | |+. .-.|.++++++...|.|.+||-|+.-+... --+|..-+|+.
T Consensus 57 i~dEilvNaad-k~--r-----d~~------m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssn 122 (842)
T KOG0355|consen 57 IFDEILVNAAD-KQ--R-----DPK------MNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSN 122 (842)
T ss_pred HHHHHhhcccc-cc--c-----CCC------cceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccc
Confidence 56799999999 32 1 332 237888899999999999999999755321 12344444442
Q ss_pred hhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-C--CceEEEEEccC--ceEEEEeCCCCCCCCCceEEEEE
Q 045760 104 KEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-D--DEQYIWESQAG--GSFTVTRDTSGELLGRGTKITLH 178 (700)
Q Consensus 104 ~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~--~~~~~w~s~~~--~~~~i~~~~~~~~~~~GT~I~L~ 178 (700)
- ......-.-|+-|.|-.-|=..+-+..|.|... . .....|..+.. ..-.+... ..+.+|+|++.
T Consensus 123 y------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~----~~~~yTkitF~ 192 (842)
T KOG0355|consen 123 Y------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS----TDEDYTKITFS 192 (842)
T ss_pred c------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC----CCCCcceEEeC
Confidence 1 111112234666666665655566666776532 1 22346765432 12122221 12339998875
No 98
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=55.01 E-value=9.6 Score=46.02 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=36.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhhe-eeecceEEEEEecC
Q 045760 77 LSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSA-YLVAEKVIVTAKHN 143 (700)
Q Consensus 77 l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~-F~vadkv~V~Sk~~ 143 (700)
++..|+|+||+.+++...+. | ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 57889999999999885432 1 12345678888888765 55666666767654
No 99
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=48.75 E-value=35 Score=32.94 Aligned_cols=58 Identities=12% Similarity=0.299 Sum_probs=45.6
Q ss_pred ChHHHHHHHhhccCCCchhHHHHHHHHHHHH---HHhCC-C-CCCCHHHHHHHHHHHHHhccCCCc
Q 045760 612 NPIMEELRKRADADKNDKSVKDLVLLLFETA---LLTSG-F-SLDDPNTFGNRIHRMLKLGLSIEE 672 (700)
Q Consensus 612 HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~A---lL~~G-~-~i~dp~~f~~ri~~ll~~~l~~~~ 672 (700)
||.|+.+.++.+. ++.+..++.++|++. .--.| . .+.|=..|..-+|.+|..+-.-..
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~ 64 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSD 64 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcccc
Confidence 8999999999964 578999999999991 11234 3 568899999999999988765544
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=44.03 E-value=26 Score=38.28 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHH
Q 045760 27 SNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLV 92 (700)
Q Consensus 27 s~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~ 92 (700)
+...+++.-.+|-|.-.+++- ....+|.|.+ ..+.-+++|+|||.|++..++.
T Consensus 354 ~e~~talyRv~QEaltNIErH-------------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 354 PEVATALYRVVQEALTNIERH-------------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-------------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 334556677788888777641 1233555554 4455679999999999977655
No 101
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=42.08 E-value=32 Score=33.20 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=18.0
Q ss_pred eEEeCCCChHHHHHHHhhccCC
Q 045760 605 TMEINPENPIMEELRKRADADK 626 (700)
Q Consensus 605 iLEINp~HplIkkL~~~~~~d~ 626 (700)
-=+.+|+||||++|..+...|-
T Consensus 15 LE~d~p~~plv~~~~~L~q~Nm 36 (147)
T PF06112_consen 15 LEADYPNHPLVAKLQALPQNNM 36 (147)
T ss_pred ecccCCCCHHHHHHHhhccCCC
Confidence 3468999999999999886553
No 102
>PF14501 HATPase_c_5: GHKL domain
Probab=41.97 E-value=38 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=12.6
Q ss_pred ccccccchhheeeecce
Q 045760 119 IGQFGVGFYSAYLVAEK 135 (700)
Q Consensus 119 IG~FGIGf~S~F~vadk 135 (700)
.+..|+|+.++=.++++
T Consensus 63 ~~~~G~GL~~v~~i~~~ 79 (100)
T PF14501_consen 63 KKGHGIGLKNVKKILEK 79 (100)
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 36889999988666553
No 103
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=40.61 E-value=37 Score=39.02 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=53.2
Q ss_pred CCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC---CCCCHHHHHHHHhHhhhc
Q 045760 25 FYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSG---IGMTKADLVNNLGTIARS 101 (700)
Q Consensus 25 LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG---iGMt~~dl~~~l~tIa~S 101 (700)
.+.-|..+|||+|.||+=.-+ |. .. ...+.|.| . ..+|.|...| .||+.+++.+. +|
T Consensus 267 v~dyP~~alREai~NAv~HRD---Ys---~~-----~~~v~I~i--y--dDRieI~NPGgl~~gi~~~~l~~~-----~s 326 (467)
T COG2865 267 VWDYPLEALREAIINAVIHRD---YS---IR-----GRNVHIEI--Y--DDRIEITNPGGLPPGITPEDLLKG-----RS 326 (467)
T ss_pred cccCCHHHHHHHHHHHHHhhc---cc---cC-----CCceEEEE--E--CCeEEEECCCCCCCCCChhHcccC-----CC
Confidence 344488899999999984432 31 11 12344444 3 3579999877 58999988753 33
Q ss_pred Cchh-HHHHHhcCCCCccccccccchhheeeec
Q 045760 102 GTKE-FMEALAAGADVSMIGQFGVGFYSAYLVA 133 (700)
Q Consensus 102 ~~~~-f~~~~~~~~~~~~IG~FGIGf~S~F~va 133 (700)
-.+. .+.++- .+..+|=+.|.|+-=.|-.+
T Consensus 327 ~~RNp~LA~~l--~~~~liE~~GSGi~rm~~~~ 357 (467)
T COG2865 327 KSRNPVLAKVL--RDMGLIEERGSGIRRMFDLM 357 (467)
T ss_pred cccCHHHHHHH--HHhhhHHHhCccHHHHHHHH
Confidence 2221 122211 34578999999996555544
No 104
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=37.70 E-value=34 Score=37.90 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCC
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMT 87 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt 87 (700)
.+.|.+..+.+.-.+.|.|||+|++
T Consensus 430 ~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 430 AVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred eEEEEEeeCCcEEEEEEecCCcCCC
Confidence 4556555655445689999999987
No 105
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.29 E-value=2.8e+02 Score=34.07 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=77.1
Q ss_pred ccccccccCCCCceecHHHHHHhhc--cCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccC
Q 045760 433 ELLRYHSTKSGDELTSLKDYVTRMK--EGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEG 510 (700)
Q Consensus 433 ~llrf~ss~~~~~~~sL~eYv~rm~--~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~g 510 (700)
..+-|-...|-+|+||+.....+.. .+.+.|..++.+..........-......|+.|....+|-+ +...|.++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~--l~~al~~~~~ 263 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD--LRFALAALGD 263 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH--HHHHHHHhcC
Confidence 3555655566678999998877764 34468999998875432222222233457888876666543 4567778888
Q ss_pred ceeEEecccCCCCCCchhHHhhHH-----------------HHHHHHHHHHHHHHHHhCCcccEEEEee
Q 045760 511 KKLVSATKEGLKLDESEDEKKKKE-----------------TLKEKFEGLCKVIKDVLGDKVEKVVVSD 562 (700)
Q Consensus 511 k~f~sV~~~~~~l~~~~e~k~~~~-----------------~~~~e~~~L~~~lk~~L~~kV~~V~vS~ 562 (700)
+.++=||..+..-.+...-++... ...+.+..+.+.|+...+-.+..+.+|+
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 899999999854221110000000 0123455666667665554577888874
No 106
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.43 E-value=99 Score=25.05 Aligned_cols=56 Identities=27% Similarity=0.191 Sum_probs=34.1
Q ss_pred cccccCCC-CceecHHHHHHhhccCCCcEEEEeCCCHHHHhc-ChhHHHHHHcCCEEEEe
Q 045760 436 RYHSTKSG-DELTSLKDYVTRMKEGQNDIYYITGESKKAVEN-SPFLEKLKKKGYEVLYM 493 (700)
Q Consensus 436 rf~ss~~~-~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~-sp~le~~~~kg~eVL~l 493 (700)
..+|..+. +..+++++|+++.++..=..+-+|.-+ .+.. -++.+..++.|+.||..
T Consensus 3 H~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~--~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 3 HVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHG--NLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred ccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC--cccCHHHHHHHHHHcCCeEEEE
Confidence 34555553 456889999888876655566666543 1112 24456667778877764
No 107
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=28.29 E-value=2e+02 Score=24.90 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCCcEEEEeCCCHH-HHhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecc
Q 045760 459 GQNDIYYITGESKK-AVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATK 518 (700)
Q Consensus 459 ~q~~IYy~~~~~~~-~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~ 518 (700)
..+.+|.++|.+.. .+..+|+. .+.|..|||..+.+++.+...|..+..++..-|..
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a---~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiGg 81 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLA---AKNNAPILLVNNSLPSSVKAFLKSLNIKKVYIIGG 81 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHH---HhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEECC
Confidence 55679999998744 44445553 34789999999999999999999887777777643
No 108
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=27.39 E-value=84 Score=34.31 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCc-cCCCCCceEEEEEcCC----CCEEEEEeCCCCCCHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSK-LDAQPELFIHIIPDKT----NNSLSIIDSGIGMTKADLV 92 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~-~~~~~~~~I~I~~d~~----~~~l~I~DnGiGMt~~dl~ 92 (700)
++--||.||..|+.-+- . +...+ +.. .+-+++++... .-.|.|.|||-|++.+=..
T Consensus 245 v~LNlVrNAaqA~~~~~-~--~~g~I~LrT--R~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 245 VFLNLVRNAAQALGGRA-D--EGGEIILRT--RTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred HHHHHHHHHHHHhcCCC-C--CCceEEEEe--ccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 56679999999996310 0 00000 000 12233333222 2358899999999875444
No 109
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=26.13 E-value=1e+02 Score=34.84 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhh
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIA 99 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa 99 (700)
+..|.|.+.. +.-+.| ||.-|+.-++...|..||
T Consensus 212 p~~v~i~F~~-G~pv~i--ng~~~~~~~li~~lN~i~ 245 (394)
T TIGR00032 212 PEVVTIDFEQ-GVPVAL--NGVSLDPVELILEANEIA 245 (394)
T ss_pred CeEEEEEEEc-ceEEEE--CCccCCHHHHHHHHHHHH
Confidence 4477777753 345666 899999999998887776
No 110
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=25.15 E-value=42 Score=37.06 Aligned_cols=46 Identities=28% Similarity=0.517 Sum_probs=36.8
Q ss_pred hcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCC
Q 045760 475 ENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLD 524 (700)
Q Consensus 475 ~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~ 524 (700)
.++|+.+.++++|+.|+|..|.+|+.++... ...+.++++..+.+-
T Consensus 296 ~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea----~rql~~~dk~~iaFf 341 (360)
T PF07429_consen 296 RDNPFWQDLKEQGIPVLFYGDELDEALVREA----QRQLANVDKQQIAFF 341 (360)
T ss_pred cCChHHHHHHhCCCeEEeccccCCHHHHHHH----HHHHhhCcccceeee
Confidence 4689999999999999999999999988764 345566666666553
No 111
>PRK13820 argininosuccinate synthase; Provisional
Probab=24.58 E-value=1.1e+02 Score=34.62 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceE
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKV 136 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv 136 (700)
+..|.|.+.. +.-+.| ||.-|+.-++...|..|| |++|||+. =+|-+++
T Consensus 212 p~~v~i~F~~-G~pv~l--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (394)
T PRK13820 212 PEIVEIEFEE-GVPVAI--NGEKMDGVELIRKLNEIA--------------------GKHGVGRT--DMMEDRV 260 (394)
T ss_pred CeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 3467777753 344556 899999999998887776 78899985 4455554
No 112
>PRK04527 argininosuccinate synthase; Provisional
Probab=23.31 E-value=1.1e+02 Score=34.50 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceE
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKV 136 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv 136 (700)
+..|.|.+.. +.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 215 p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vEnr~ 263 (400)
T PRK04527 215 ALTVTIKFVE-GEAVAL--DGKPLPGAQILAKLNKLF--------------------AQYGVGRG--VYTGDTV 263 (400)
T ss_pred CeEEEEEEEc-cEEEEE--CCEeCCHHHHHHHHHHHH--------------------hhcccCce--eeecccc
Confidence 3477777753 344555 899999999998888776 78999984 3444443
No 113
>PRK00509 argininosuccinate synthase; Provisional
Probab=23.21 E-value=1.1e+02 Score=34.48 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceE
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKV 136 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv 136 (700)
+-.|.|.+.. +.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 215 p~~v~i~F~~-G~pval--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vE~r~ 263 (399)
T PRK00509 215 PEYVEIEFEK-GVPVAI--NGEALSPAELIEELNELA--------------------GKHGIGRI--DIVENRL 263 (399)
T ss_pred CeEEEEEEEc-cEEEEE--cCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 3467777753 455666 899999999998887776 78899984 3444443
No 114
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=6.6e+02 Score=27.02 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CHHHHHHH--HHHHhhhhhcccc--cChhhHHHHhccc
Q 045760 381 LKVIRKNLVKKCIELFQEIAE-NKEDYNKF--YESFSKNLKLGIH--EDSTNKTKLAELL 435 (700)
Q Consensus 381 l~~i~~~l~~k~~~~l~~l~~-d~e~y~~f--~~~~~~~lK~G~~--~D~~~~~~l~~ll 435 (700)
.+.-.+.+.++++..+++-.. .++.+.+- ..--|.+|-.|+. ......+.+.+++
T Consensus 74 ~K~r~NeiA~~vl~~vr~~~~~~~~dl~~Avk~ai~GN~iDfgv~G~~~~~lee~~~~~~ 133 (285)
T COG1578 74 YKRRANEIALKVLPKVRENIEDTPEDLKTAVKLAIVGNVIDFGVLGFSPFDLEEEVEKLL 133 (285)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcceeeccccCCHhHHHHHHHHhh
Confidence 344455566666666665222 34444322 2235555556665 2444455555554
No 115
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.72 E-value=4.3e+02 Score=25.84 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=45.5
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchh-HHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKE-FMEAL 110 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~-f~~~~ 110 (700)
...|||.||+-.-+ ..++-|+.+.+...-.+.|..---+-|..+.++.|..|--..-.+ .++.+
T Consensus 67 l~NELiENAVKfra---------------~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRi 131 (184)
T COG5381 67 LANELIENAVKFRA---------------TGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERI 131 (184)
T ss_pred HHHHHHHhhhcccC---------------CCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 57899999985542 124455555554444456666666777888887666554433333 45555
Q ss_pred hcCCCCccccccccchh
Q 045760 111 AAGADVSMIGQFGVGFY 127 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~ 127 (700)
..+.-..--..-|+|++
T Consensus 132 EanA~~~d~~gSglGLL 148 (184)
T COG5381 132 EANALESDCEGSGLGLL 148 (184)
T ss_pred HhhccCCCCccccccce
Confidence 43211112233467774
No 116
>PLN00200 argininosuccinate synthase; Provisional
Probab=21.41 E-value=1.4e+02 Score=33.93 Aligned_cols=42 Identities=29% Similarity=0.485 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchh
Q 045760 63 ELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFY 127 (700)
Q Consensus 63 ~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~ 127 (700)
+-.|.|.+.. +.-+.| ||.-|+.-+|...|..|| |++|||+.
T Consensus 219 p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~ 260 (404)
T PLN00200 219 PEYIEIEFEK-GLPVAI--NGKTLSPATLLTKLNEIG--------------------GKHGIGRI 260 (404)
T ss_pred CeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc
Confidence 3467777753 344566 899999999998888776 78899984
Done!