Query 045760
Match_columns 700
No_of_seqs 275 out of 1768
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 1E-170 5E-175 1457.5 48.0 663 5-669 3-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 1E-157 4E-162 1350.7 57.7 631 5-673 22-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 2E-151 8E-156 1295.0 52.3 611 5-665 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-137 8E-142 1167.1 39.1 546 5-590 4-558 (559)
5 3hjc_A Heat shock protein 83-1 100.0 2E-124 7E-129 1028.2 40.4 417 257-673 11-427 (444)
6 3q6m_A Heat shock protein HSP 100.0 1E-124 5E-129 1025.0 38.1 437 264-700 2-442 (448)
7 2cge_A ATP-dependent molecular 100.0 1E-118 4E-123 979.7 42.0 404 265-669 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 5.1E-93 1.7E-97 737.5 24.0 288 265-553 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 8.4E-91 2.9E-95 725.4 24.6 289 265-574 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 1E-88 3.6E-93 699.6 24.8 263 263-525 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 1.4E-88 4.8E-93 696.8 23.4 257 263-519 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 1.8E-85 6.2E-90 677.8 21.5 258 263-520 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 8E-61 2.7E-65 497.4 24.9 259 3-263 21-281 (281)
14 3ied_A Heat shock protein; HSP 100.0 5.5E-56 1.9E-60 451.6 19.3 206 4-211 23-271 (272)
15 1qy5_A Endoplasmin; GRP94, NEC 100.0 1E-55 3.5E-60 460.1 20.3 259 4-263 4-269 (269)
16 3nmq_A Heat shock protein HSP 100.0 7.8E-55 2.7E-59 444.2 23.3 209 5-214 16-224 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 1E-50 3.5E-55 417.8 23.1 215 5-220 37-251 (256)
18 3t0h_A Heat shock protein HSP 100.0 6.2E-50 2.1E-54 407.6 22.9 215 4-219 8-222 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 6.2E-49 2.1E-53 403.2 20.6 208 5-213 9-221 (236)
20 2wer_A ATP-dependent molecular 100.0 5.6E-46 1.9E-50 377.7 22.2 210 5-214 3-212 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 1.1E-45 3.8E-50 384.1 22.7 209 5-214 45-253 (264)
22 2ior_A Chaperone protein HTPG; 100.0 3.8E-41 1.3E-45 345.4 18.6 205 5-212 24-233 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 2.1E-33 7.1E-38 259.9 12.4 114 542-665 12-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.8 1.4E-18 4.7E-23 186.7 15.2 155 23-204 19-185 (333)
25 1h7s_A PMS1 protein homolog 2; 99.7 1.4E-16 4.9E-21 172.9 9.8 167 13-205 14-197 (365)
26 3h4l_A DNA mismatch repair pro 99.6 8.6E-16 2.9E-20 166.5 8.9 153 23-204 20-186 (367)
27 3na3_A DNA mismatch repair pro 99.6 1.9E-14 6.6E-19 154.7 15.8 161 17-204 16-189 (348)
28 3fv5_A DNA topoisomerase 4 sub 99.2 5.8E-11 2E-15 118.6 11.4 160 28-211 17-190 (201)
29 1mu5_A Type II DNA topoisomera 99.0 4.1E-10 1.4E-14 126.0 9.5 149 30-201 34-197 (471)
30 2zbk_B Type 2 DNA topoisomeras 99.0 1.4E-09 4.8E-14 123.2 10.7 158 30-210 33-206 (530)
31 1kij_A DNA gyrase subunit B; t 98.9 2.1E-09 7.3E-14 117.5 11.4 159 30-211 34-205 (390)
32 1s16_A Topoisomerase IV subuni 98.9 6.4E-09 2.2E-13 113.7 12.9 165 23-211 23-204 (390)
33 1ei1_A DNA gyrase B, GYRB; ATP 98.8 2.9E-08 1E-12 108.5 13.0 156 28-211 34-206 (391)
34 4duh_A DNA gyrase subunit B; s 98.7 4.1E-08 1.4E-12 99.2 11.4 157 29-211 36-207 (220)
35 3cwv_A DNA gyrase, B subunit, 98.7 4.5E-08 1.6E-12 106.2 12.4 153 29-211 31-194 (369)
36 2q2e_B Type 2 DNA topoisomeras 98.7 6.5E-09 2.2E-13 119.5 4.5 156 30-211 39-212 (621)
37 1zxm_A TOPO IIA ATPase, DNA to 98.7 5.3E-08 1.8E-12 106.6 10.8 159 30-210 54-230 (400)
38 4emv_A DNA topoisomerase IV, B 98.6 1.6E-07 5.3E-12 95.3 12.4 157 30-211 42-213 (226)
39 3lnu_A Topoisomerase IV subuni 98.4 1.7E-06 5.7E-11 94.7 13.9 164 23-211 42-223 (408)
40 3ttz_A DNA gyrase subunit B; p 98.2 8.9E-06 3.1E-10 80.8 12.2 142 29-211 32-180 (198)
41 1pvg_A DNA topoisomerase II; G 98.0 2.1E-05 7.2E-10 86.5 11.5 157 31-210 67-243 (418)
42 1id0_A PHOQ histidine kinase; 97.6 4E-05 1.4E-09 70.7 4.5 74 31-134 47-120 (152)
43 3jz3_A Sensor protein QSEC; he 97.5 4E-05 1.4E-09 74.9 3.6 95 32-180 121-215 (222)
44 1ysr_A Sensor-type histidine k 97.5 8.6E-05 3E-09 68.5 5.0 75 32-134 50-124 (150)
45 1i58_A Chemotaxis protein CHEA 97.5 9E-05 3.1E-09 71.3 5.1 58 33-92 52-109 (189)
46 4ew8_A Sensor protein DIVL; si 97.4 0.00012 4E-09 74.0 6.0 73 32-134 159-231 (268)
47 2btz_A Pyruvate dehydrogenase 97.4 0.00017 5.9E-09 78.3 7.3 115 32-181 235-349 (394)
48 1th8_A Anti-sigma F factor; SP 97.4 0.00016 5.5E-09 66.6 6.0 84 30-140 41-124 (145)
49 3d36_A Sporulation kinase B; G 97.4 0.00016 5.4E-09 71.6 5.9 74 32-134 127-200 (244)
50 2e0a_A Pyruvate dehydrogenase 97.4 0.00019 6.4E-09 78.0 7.0 116 32-181 234-349 (394)
51 3a0y_A Sensor protein; ATP-LID 97.4 0.00014 4.8E-09 66.8 4.8 72 32-133 51-122 (152)
52 2q8g_A [pyruvate dehydrogenase 97.4 0.00023 7.8E-09 77.7 7.3 116 32-181 247-362 (407)
53 3ehg_A Sensor kinase (YOCF pro 97.3 0.0001 3.4E-09 66.8 3.4 45 32-91 44-88 (128)
54 1y8o_A [pyruvate dehydrogenase 97.3 0.00022 7.4E-09 78.3 6.6 117 32-181 257-373 (419)
55 3sl2_A Sensor histidine kinase 97.3 7.9E-05 2.7E-09 71.0 2.6 79 32-134 47-127 (177)
56 3ehh_A Sensor kinase (YOCF pro 97.3 0.00016 5.5E-09 70.8 4.9 45 32-91 134-178 (218)
57 2c2a_A Sensor histidine kinase 97.3 0.00013 4.6E-09 73.5 3.9 80 32-134 142-223 (258)
58 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00019 6.3E-09 77.8 4.8 96 31-134 241-348 (388)
59 1bxd_A ENVZ(290-450), protein 97.2 0.00011 3.6E-09 68.9 2.4 75 32-134 51-125 (161)
60 4gfh_A DNA topoisomerase 2; to 97.0 0.0044 1.5E-07 76.1 14.1 147 31-200 62-224 (1177)
61 3zxo_A Redox sensor histidine 97.0 0.00027 9.3E-09 63.4 2.3 43 32-90 47-89 (129)
62 1b3q_A Protein (chemotaxis pro 96.9 0.00062 2.1E-08 73.8 5.4 52 33-92 111-168 (379)
63 3zxq_A Hypoxia sensor histidin 96.9 0.00052 1.8E-08 61.1 3.4 43 32-90 43-85 (124)
64 1r62_A Nitrogen regulation pro 96.7 0.001 3.5E-08 61.3 3.8 74 32-134 52-135 (160)
65 3a0r_A Sensor protein; four he 96.6 0.0008 2.8E-08 70.2 2.8 48 32-93 248-295 (349)
66 4fpp_A Phosphotransferase; fou 95.4 0.0098 3.3E-07 60.1 4.1 47 32-92 150-198 (247)
67 3ke6_A Protein RV1364C/MT1410; 86.4 0.69 2.4E-05 50.0 5.6 73 30-140 299-372 (399)
68 1ixm_A SPO0B, protein (sporula 71.6 2.6 9E-05 41.0 3.7 55 32-94 109-165 (192)
69 3bma_A D-alanyl-lipoteichoic a 31.0 62 0.0021 35.1 6.1 51 453-505 257-307 (407)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-170 Score=1457.47 Aligned_cols=663 Identities=66% Similarity=1.046 Sum_probs=571.4
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|+|+||||+++||+||+++||||+++|||||||||+||++++||+++++++......++.|+|.+++++++|+|.|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~ 164 (700)
|||++||.++|++||+||+++|+++++.+.+...||||||||||+||||++|+|+|++.++.++.|+++|++.|+|.+++
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~ 162 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDE 162 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECC
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999998887765677899999999999999999999999997777999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhh-----------hhhccC
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEE-----------KKDEEG 233 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~-----------~~~~~~ 233 (700)
.+...++||+|+|+|+++..+|++.++|+++|++||+|++|||+++..++.++++++++++++ ++++.+
T Consensus 163 ~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~ 242 (677)
T 2cg9_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKP 242 (677)
T ss_dssp SSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC--------------------------
T ss_pred CCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccccc
Confidence 234568999999999999999999999999999999999999999755443333322211000 001111
Q ss_pred CccccchHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEE
Q 045760 234 KVEDVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAIL 313 (700)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~ll 313 (700)
+.+++++++ ++.++++++++...+|+.||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+|||
T Consensus 243 ~~~~~~~~~-~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~~~lL 321 (677)
T 2cg9_A 243 KLEEVDEEE-EKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAIL 321 (677)
T ss_dssp --------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCEEEEE
T ss_pred ccccccchh-hhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceEEEEE
Confidence 122211111 1123345555666789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHH
Q 045760 314 FVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCI 393 (700)
Q Consensus 314 yiP~~~p~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~ 393 (700)
|||+++||++|.+.+.++||+||||||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+
T Consensus 322 yiP~~ap~d~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl 401 (677)
T 2cg9_A 322 FIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 401 (677)
T ss_dssp EECSSCCC---------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCchhhhhhhhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999754557999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHH
Q 045760 394 ELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKA 473 (700)
Q Consensus 394 ~~l~~l~~d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~ 473 (700)
++|.+||+|+++|++||++||.+||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|+++
T Consensus 402 ~~l~~la~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~ 481 (677)
T 2cg9_A 402 EAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKA 481 (677)
T ss_dssp HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSCSTT
T ss_pred HHHHHHHhCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCCHHH
Confidence 99999999999999999999999999999999999999999999999876689999999999999999999999999999
Q ss_pred HhcChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCC
Q 045760 474 VENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGD 553 (700)
Q Consensus 474 ~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~ 553 (700)
+++|||+|.|++||||||||++|||||||++|.+|+|++|++|+++ ++|++.+++++..+..++++++|++|||++|++
T Consensus 482 ~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~ 560 (677)
T 2cg9_A 482 VEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 560 (677)
T ss_dssp TTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHHHHHHTTCS
T ss_pred HHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999 988765444444455667899999999999999
Q ss_pred cccEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccC-CCchhHH
Q 045760 554 KVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD-KNDKSVK 632 (700)
Q Consensus 554 kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d-~~~~~~~ 632 (700)
+|.+|++|+||++||||||++++|||++|+|||++|+++++.+.+++..+++|||||+||||++|..+...| .+++.++
T Consensus 561 ~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d~~~~~~~~ 640 (677)
T 2cg9_A 561 QVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVK 640 (677)
T ss_dssp SCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHTCCSSCSSSS
T ss_pred cceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhccccCHHHHH
Confidence 999999999999999999999999999999999998765544445677899999999999999999876544 3566789
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccC
Q 045760 633 DLVLLLFETALLTSGFSLDDPNTFGNRIHRMLKLGLS 669 (700)
Q Consensus 633 ~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~~~l~ 669 (700)
++|++|||+|+|++|++++||+.|++|+|+||.++||
T Consensus 641 ~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 641 DLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp TTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999987664
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.1e-157 Score=1350.69 Aligned_cols=631 Identities=53% Similarity=0.922 Sum_probs=540.9
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|+++||+++++||++|+++||||+++|||||||||+||++|+||++++++.......++.|+|.+++++++|+|.|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC-----CCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEE
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFT 159 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~ 159 (700)
|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+|++.++.++.|+++| |.|+
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~~t 180 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 180 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SCCE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-CeEE
Confidence 99999999999999999999999888754 46789999999999999999999999998766799999999 9999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccc
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVD 239 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (700)
+.+.+.+...++||+|+|+|+++..+|++.++|+++|++||+|+++||+++.+++.+
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~----------------------- 237 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG----------------------- 237 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC--------------------------
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc-----------------------
Confidence 988542235689999999999999999999999999999999999999997642100
Q ss_pred hHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCC
Q 045760 240 EEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRA 319 (700)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 319 (700)
+ ++...+|+.+|+.+|+|+|+++++++|+|.+||++++++|.+||+|+|+++||+++|+|+||+|+++
T Consensus 238 ------~------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~ 305 (666)
T 2o1u_A 238 ------G------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSA 305 (666)
T ss_dssp ----------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSC
T ss_pred ------c------cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCC
Confidence 0 0012468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCC--CCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHH
Q 045760 320 PFDLFDTR--KKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQ 397 (700)
Q Consensus 320 p~~~~~~~--~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~ 397 (700)
||++|... ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++||+.|++||+++|.
T Consensus 306 p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~ 385 (666)
T 2o1u_A 306 PRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIK 385 (666)
T ss_dssp CC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHH
Confidence 99998642 3478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCHHHHH-HHHHHHhhhhhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhc
Q 045760 398 EIAENKEDYN-KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVEN 476 (700)
Q Consensus 398 ~l~~d~e~y~-~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~ 476 (700)
++++ ++|+ +||++||++||+|+++|..||++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++
T Consensus 386 ~l~~--e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 463 (666)
T 2o1u_A 386 KIAD--EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAES 463 (666)
T ss_dssp HSCH--HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHT
T ss_pred HHHH--HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhh
Confidence 9998 8999 999999999999999999999999999999999976789999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHH-hCCcc
Q 045760 477 SPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDV-LGDKV 555 (700)
Q Consensus 477 sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~-L~~kV 555 (700)
|||+|.|++||||||||++|||||||++|.+|+|++|+||++++++|++.+++++..++.++++++|++|||++ |+++|
T Consensus 464 sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v 543 (666)
T 2o1u_A 464 SPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKI 543 (666)
T ss_dssp CGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTTE
T ss_pred CcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhccCCCce
Confidence 99999999999999999999999999999999999999999999999876555555556678999999999999 99999
Q ss_pred cEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcc---cCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHH
Q 045760 556 EKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALR---DNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVK 632 (700)
Q Consensus 556 ~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~---~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~ 632 (700)
.+|++|+||++||||||++++|||++|+|||++|++. ++.+..++..+++|||||+||||++|+.+...+.+++.++
T Consensus 544 ~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~ 623 (666)
T 2o1u_A 544 EKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVS 623 (666)
T ss_dssp EEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHH
T ss_pred eEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHHH
Confidence 9999999999999999999999999999999999872 2333446778999999999999999998776665677899
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccCCCcc
Q 045760 633 DLVLLLFETALLTSGFSLDDPNTFGNRIHRMLKLGLSIEED 673 (700)
Q Consensus 633 ~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~~~l~~~~~ 673 (700)
++|+||||+|+|++|++++||+.|++|+|+||.++|+++.+
T Consensus 624 ~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~ 664 (666)
T 2o1u_A 624 DLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPD 664 (666)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999864
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=2.5e-151 Score=1295.03 Aligned_cols=611 Identities=39% Similarity=0.710 Sum_probs=523.3
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|+|+||+++++||++|+++||||+++|||||||||+||++|+||++++++.......++.|+|.+++++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 38899999999999999999999999999999999999999999999999987777777899999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC--CCCccccccccchhheeeecceEEEEEecCC---CceEEEEEccCceEE
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG--ADVSMIGQFGVGFYSAYLVAEKVIVTAKHND---DEQYIWESQAGGSFT 159 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~--~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~---~~~~~w~s~~~~~~~ 159 (700)
|||++||.++|++||+||+++|+++++.+ .+...||||||||||+||||++|+|.|++.+ ..++.|++.|++.|+
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (624)
T ss_dssp CCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCE
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeEE
Confidence 99999999999999999999998887643 4678999999999999999999999999864 568999999999999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccc
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVD 239 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (700)
+.+. ....+||+|+|+|++++.+|++.++|+++|++||.|+++||.+..+. . . ++
T Consensus 164 i~~~---~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~e---~--~-~~---------------- 218 (624)
T 2ioq_A 164 VADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE---E--K-DG---------------- 218 (624)
T ss_dssp EEEE---CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEEE---E--C-SS----------------
T ss_pred EEEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc---c--c-cc----------------
Confidence 9874 24589999999999999999999999999999999999999996410 0 0 00
Q ss_pred hHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCC
Q 045760 240 EEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRA 319 (700)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 319 (700)
+ + ..+|+.+|+.+|+|+++++++++++|.+||+.++++|.+||+|+|++++|+++|+|+||+|+++
T Consensus 219 --------~-----~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~ 284 (624)
T 2ioq_A 219 --------E-----T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQA 284 (624)
T ss_dssp --------C-----E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSC
T ss_pred --------c-----c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcC
Confidence 0 0 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045760 320 PFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEI 399 (700)
Q Consensus 320 p~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l 399 (700)
|+++|.. ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.++
T Consensus 285 p~~~~~r-~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l 363 (624)
T 2ioq_A 285 PWDMWNR-DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKL 363 (624)
T ss_dssp CGGGSSS-SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhh-cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998864 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCC--ceecHHHHHHhhccCCCcEEEEeCCCHHHHhc
Q 045760 400 AE-NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVEN 476 (700)
Q Consensus 400 ~~-d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~--~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~ 476 (700)
++ |+++|++||++||++||+|+++|..||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++
T Consensus 364 ~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~ 443 (624)
T 2ioq_A 364 AKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 443 (624)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHH
T ss_pred HhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhh
Confidence 98 9999999999999999999999999999999999999998653 79999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCc-hhHHhhHHHHHHHHHHHHHHHHHHhCCcc
Q 045760 477 SPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDES-EDEKKKKETLKEKFEGLCKVIKDVLGDKV 555 (700)
Q Consensus 477 sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~-~e~k~~~~~~~~e~~~L~~~lk~~L~~kV 555 (700)
|||+|.|++||+|||||++||||||+++|.+|+|++|++|+++++++++. +++++..+..++++++|++|||++|+++|
T Consensus 444 sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v 523 (624)
T 2ioq_A 444 SPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERV 523 (624)
T ss_dssp CHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSSSSS
T ss_pred ChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999998753 33333334567789999999999999999
Q ss_pred cEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHH
Q 045760 556 EKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLV 635 (700)
Q Consensus 556 ~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~ 635 (700)
++|++|+||++||||||++++|||++|+|||++|++ .++..+++|||||+||||++|... .+++.++++|
T Consensus 524 ~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~~~~ 593 (624)
T 2ioq_A 524 KDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFSEWV 593 (624)
T ss_dssp SEEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHHHHH
T ss_pred eEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHHHHH
Confidence 999999999999999999999999999999999863 234578999999999999999652 2456799999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 045760 636 LLLFETALLTSGFSLDDPNTFGNRIHRMLK 665 (700)
Q Consensus 636 ~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~ 665 (700)
++|||+|+|++|++++||+.|++|+|+||.
T Consensus 594 ~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 594 ELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999996
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.2e-137 Score=1167.11 Aligned_cols=546 Identities=41% Similarity=0.742 Sum_probs=438.0
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|+++||+++++||++|+++|||||.+|||||||||+||++|+|+++++++.......++.|+|.+++++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 38899999999999999999999999999999999999999999999999988777778899999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC--CCCccccccccchhheeeecceEEEEEecCC---CceEEEEEccCceEE
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG--ADVSMIGQFGVGFYSAYLVAEKVIVTAKHND---DEQYIWESQAGGSFT 159 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~--~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~---~~~~~w~s~~~~~~~ 159 (700)
|||++||.++|++||+||+++|+++++.+ .+...||||||||||+||||++|+|.|++.+ ..++.|++.|++.|+
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~ 163 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 163 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeE
Confidence 99999999999999999999987666532 3577999999999999999999999999865 568999999999999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhhhhccCCccccc
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEKKDEEGKVEDVD 239 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (700)
+.+. ....+||+|+|+|++++.+|++.++|+++|++||.|+++||.+..+. . +++
T Consensus 164 i~~~---~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~e---~---~~~---------------- 218 (559)
T 1y4s_A 164 VADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE---E---KDG---------------- 218 (559)
T ss_dssp EEEE---CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEEE---C---STT----------------
T ss_pred EeEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc---c---ccc----------------
Confidence 9874 24589999999999999999999999999999999999999996410 0 000
Q ss_pred hHHHHHhhhhccceeeecceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCC
Q 045760 240 EEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRA 319 (700)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 319 (700)
+ + ..+|+.+|+.+|+|+++++++++++|.+||++++++|.+||+|+|++++|+++|+|+||+|+++
T Consensus 219 --------~-----~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~ 284 (559)
T 1y4s_A 219 --------E-----T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQA 284 (559)
T ss_dssp --------S-----C-EEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSC
T ss_pred --------c-----c-ccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcC
Confidence 0 0 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCceEEEeeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045760 320 PFDLFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEI 399 (700)
Q Consensus 320 p~~~~~~~~~~~~i~Ly~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l 399 (700)
|+++|.. ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.++
T Consensus 285 p~~~~~r-~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l 363 (559)
T 1y4s_A 285 PWDMWNR-DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKL 363 (559)
T ss_dssp CTTCSSS-SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhh-cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998864 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CHHHHHHHHHHHhhhhhcccccChhhHHHHhccccccccCCCC--ceecHHHHHHhhccCCCcEEEEeCCCHHHHhc
Q 045760 400 AE-NKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVEN 476 (700)
Q Consensus 400 ~~-d~e~y~~f~~~~~~~lK~G~~~D~~~~~~l~~llrf~ss~~~~--~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~ 476 (700)
++ |+++|++||++||++||+|+++|..||++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++
T Consensus 364 ~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~ 443 (559)
T 1y4s_A 364 AKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 443 (559)
T ss_dssp HHHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHT
T ss_pred HhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhh
Confidence 98 8999999999999999999999999999999999999998653 69999999999999999999999999999999
Q ss_pred ChhHHHHHHcCCEEEEeCCCchHHHHHHHhhccCceeEEecccCCCCCCc-hhHHhhHHHHHHHHHHHHHHHHHHhCCcc
Q 045760 477 SPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDES-EDEKKKKETLKEKFEGLCKVIKDVLGDKV 555 (700)
Q Consensus 477 sp~le~~~~kg~eVL~l~dpiDe~~l~~L~~y~gk~f~sV~~~~~~l~~~-~e~k~~~~~~~~e~~~L~~~lk~~L~~kV 555 (700)
|||+|.|++||+|||||++||||||+++|.+|+|++|++|+++++++++. +++++..+..++++++|++|||++|+++|
T Consensus 444 sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v 523 (559)
T 1y4s_A 444 SPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERV 523 (559)
T ss_dssp CSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC----------------------------------------
T ss_pred ChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999998753 33333344557789999999999999999
Q ss_pred cEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHh
Q 045760 556 EKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQA 590 (700)
Q Consensus 556 ~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~ 590 (700)
++|++|+||++||||||++++|||++|+|||++|+
T Consensus 524 ~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 524 KDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp -----------------------------------
T ss_pred eEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 99999999999999999999999999999999974
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=2.1e-124 Score=1028.19 Aligned_cols=417 Identities=66% Similarity=1.116 Sum_probs=372.8
Q ss_pred cceeeeccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEE
Q 045760 257 HEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLY 336 (700)
Q Consensus 257 ~~~~~~N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly 336 (700)
.+|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|.....++||+||
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLY 90 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 90 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----CCCCCCSEEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhhhhhcCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999754457999999
Q ss_pred eeeeeccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhh
Q 045760 337 VRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKN 416 (700)
Q Consensus 337 ~~rv~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~ 416 (700)
||||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++++|+++|++||++||.+
T Consensus 91 v~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~d~e~Y~kFw~~fg~~ 170 (444)
T 3hjc_A 91 VRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKN 170 (444)
T ss_dssp ETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred EeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCC
Q 045760 417 LKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDA 496 (700)
Q Consensus 417 lK~G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dp 496 (700)
||+|+++|..||++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++|
T Consensus 171 lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~ 250 (444)
T 3hjc_A 171 IKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEP 250 (444)
T ss_dssp HHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEECSH
T ss_pred HhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEeCCc
Confidence 99999999999999999999999987778999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCC
Q 045760 497 IDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEY 576 (700)
Q Consensus 497 iDe~~l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~ 576 (700)
|||||+++|.+|+|++|+||+++++++++.+++++..++.++++++|++|+|++|+++|++|++|+||++||||||++++
T Consensus 251 iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~ 330 (444)
T 3hjc_A 251 IDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEF 330 (444)
T ss_dssp HHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEEBCSS
T ss_pred hHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEcCCc
Confidence 99999999999999999999999999876655555556667789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHH
Q 045760 577 GWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTF 656 (700)
Q Consensus 577 g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~AlL~~G~~i~dp~~f 656 (700)
|||++|+|||++|++.++.+..++..++||||||+||||++|+++...|.+++.++++|++|||+|+|++|+.++||+.|
T Consensus 331 g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~f 410 (444)
T 3hjc_A 331 GWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGY 410 (444)
T ss_dssp SBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred cccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccHHHH
Confidence 99999999999998765544456778999999999999999999887776788899999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcc
Q 045760 657 GNRIHRMLKLGLSIEED 673 (700)
Q Consensus 657 ~~ri~~ll~~~l~~~~~ 673 (700)
++|+|+||..+||++.+
T Consensus 411 ~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 411 AERINRMIKLGLSLDEE 427 (444)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCcc
Confidence 99999999999999875
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=1.3e-124 Score=1025.03 Aligned_cols=437 Identities=71% Similarity=1.144 Sum_probs=361.2
Q ss_pred cCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeecc
Q 045760 264 KQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIM 343 (700)
Q Consensus 264 ~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I~ 343 (700)
.++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|.....++||+|||||||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCEEEEETTEEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhhhhhccceeEEeeeeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999997544579999999999999
Q ss_pred ccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhccccc
Q 045760 344 DNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHE 423 (700)
Q Consensus 344 d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~lK~G~~~ 423 (700)
|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++++|+++|++||++||.+||+|+++
T Consensus 82 d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la~d~e~Y~~f~~~fg~~lK~Gi~e 161 (448)
T 3q6m_A 82 DNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHE 161 (448)
T ss_dssp SCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHH
Q 045760 424 DSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVG 503 (700)
Q Consensus 424 D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~ 503 (700)
|..||++|++||||+||.++++++||+||++||+++|+.|||++|+|++++++|||+|.|++||||||||++||||||++
T Consensus 162 D~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~ 241 (448)
T 3q6m_A 162 DSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQ 241 (448)
T ss_dssp CGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHTT
T ss_pred cHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCcccHHHH
Q 045760 504 QLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANME 583 (700)
Q Consensus 504 ~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Me 583 (700)
+|.+|+|++|+||+++++++++.+++++..++.++++++||+|||++||++|++|++|+||++||||||++++|||++|+
T Consensus 242 ~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Me 321 (448)
T 3q6m_A 242 QLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANME 321 (448)
T ss_dssp TCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCHHHH
T ss_pred HHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhHHHH
Confidence 99999999999999999999776655555556677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 045760 584 RIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRM 663 (700)
Q Consensus 584 r~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d~~~~~~~~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~l 663 (700)
|||++|+++++.+.+++..+|||||||+||||++|.++...|.+++.++++|+||||+|+|++|++++||+.|++|||+|
T Consensus 322 rimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~l 401 (448)
T 3q6m_A 322 RIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRM 401 (448)
T ss_dssp HHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHHH
Confidence 99999887655444567789999999999999999998877777788999999999999999999999999999999999
Q ss_pred HHhccCCCcccCCCCCC---CCCCCCCCC-cccCCCCccCC
Q 045760 664 LKLGLSIEEDAGDADAD---MPPLEDAAD-DAEGSKMEEVD 700 (700)
Q Consensus 664 l~~~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~ 700 (700)
|..+||++.++..++++ .+++.|+.+ +.+.+.+++||
T Consensus 402 l~~~L~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (448)
T 3q6m_A 402 IKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 442 (448)
T ss_dssp HHHTTC-----------------------------------
T ss_pred HHHhcCCCccccccccccccccCCCCCCCCCcchhhhhhhc
Confidence 99999999765444222 122335544 33466777664
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-118 Score=979.71 Aligned_cols=404 Identities=67% Similarity=1.082 Sum_probs=381.1
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeeccc
Q 045760 265 QKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMD 344 (700)
Q Consensus 265 ~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I~d 344 (700)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|++...++||+||||||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~d 80 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSCCCCCCCEEEETTEEEES
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhhhccCCeEEEEeeeEecC
Confidence 47999999999999999999999999999999999999999999999999999999999976555799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhcccccC
Q 045760 345 NCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHED 424 (700)
Q Consensus 345 ~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~lK~G~~~D 424 (700)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++++|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~~e~y~kf~~~fg~~lK~G~~eD 160 (405)
T 2cge_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (405)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhhhhhcchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHH
Q 045760 425 STNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQ 504 (700)
Q Consensus 425 ~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~ 504 (700)
..||++|++||||+||+++++++||+||++|||++|+.|||+||+|++++++|||+|.|++||||||||++||||+|+++
T Consensus 161 ~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~~ 240 (405)
T 2cge_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (405)
T ss_dssp TTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHHHHHH
Confidence 99999999999999999766799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCcccHHHHH
Q 045760 505 LKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMER 584 (700)
Q Consensus 505 L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer 584 (700)
|.+|+|++|++|+++ +++++.+++++..+..++++++|++|||++|+++|.+|++|+||++||||||++++|||++|+|
T Consensus 241 L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~mer 319 (405)
T 2cge_A 241 LKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMER 319 (405)
T ss_dssp HCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCHHHHH
T ss_pred HHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccHHHHH
Confidence 999999999999999 9887655444444556778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 045760 585 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD-KNDKSVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRM 663 (700)
Q Consensus 585 ~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~~~~d-~~~~~~~~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~l 663 (700)
||++|++.++++..++..+++|||||+||||++|..+...+ .+++.++++|++|||+|+|++|++++||+.|++|+|+|
T Consensus 320 ~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r~~~l 399 (405)
T 2cge_A 320 IMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRL 399 (405)
T ss_dssp HHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 99999876655545677899999999999999999876544 45677999999999999999999999999999999999
Q ss_pred HHhccC
Q 045760 664 LKLGLS 669 (700)
Q Consensus 664 l~~~l~ 669 (700)
|.++||
T Consensus 400 l~~~l~ 405 (405)
T 2cge_A 400 ISLGLN 405 (405)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=5.1e-93 Score=737.48 Aligned_cols=288 Identities=68% Similarity=1.098 Sum_probs=243.0
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeeccc
Q 045760 265 QKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMD 344 (700)
Q Consensus 265 ~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I~d 344 (700)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|.+.+.++||+||||||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLYvrrVfI~d 80 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSCCCCCCCEEEETTEEEES
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhhhccCCeEEEEeeeEeec
Confidence 47999999999999999999999999999999999999999999999999999999999986555799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhcccccC
Q 045760 345 NCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHED 424 (700)
Q Consensus 345 ~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~lK~G~~~D 424 (700)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++++|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~~fg~~lK~Gi~eD 160 (288)
T 1hk7_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (288)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHH
Q 045760 425 STNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQ 504 (700)
Q Consensus 425 ~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~ 504 (700)
..||++|++||||+||+++++++||+||++||+++|+.|||+||+|++++++|||+|.|++||+|||||++|||||||++
T Consensus 161 ~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~ 240 (288)
T 1hk7_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (288)
T ss_dssp TTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHhh
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCC
Q 045760 505 LKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGD 553 (700)
Q Consensus 505 L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~ 553 (700)
|++|+|++|+||+++ +++++.+++++..++.++++++||+|||++||+
T Consensus 241 L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 241 LKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HCEETTEEEEETTTC----------------------------------
T ss_pred hhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999 888765444444455567899999999999985
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=8.4e-91 Score=725.44 Aligned_cols=289 Identities=42% Similarity=0.745 Sum_probs=246.8
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeeccc
Q 045760 265 QKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMD 344 (700)
Q Consensus 265 ~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I~d 344 (700)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+.. .++||+||||||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~~-~~~~ikLYvrrVfI~D 80 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRD-HKHGLKLYVQRVFIMD 80 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTSTT-CCCSEEEEETTEEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhhh-ccCCeEEEEeceEeec
Confidence 479999999999999999999999999999999999999999999999999999999998743 4789999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHhhhhhccccc
Q 045760 345 NCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAE-NKEDYNKFYESFSKNLKLGIHE 423 (700)
Q Consensus 345 ~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~-d~e~y~~f~~~~~~~lK~G~~~ 423 (700)
+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+ |+++|++||++||.+||+|+++
T Consensus 81 ~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~e 160 (303)
T 2gq0_A 81 DAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAE 160 (303)
T ss_dssp EEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHH
T ss_pred chhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred ChhhHHHHhccccccccCCC--CceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHH
Q 045760 424 DSTNKTKLAELLRYHSTKSG--DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYA 501 (700)
Q Consensus 424 D~~~~~~l~~llrf~ss~~~--~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~ 501 (700)
|..||++|++||||+||.++ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||+|||||++||||+|
T Consensus 161 D~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~ 240 (303)
T 2gq0_A 161 DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWM 240 (303)
T ss_dssp CGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTHHHH
T ss_pred CHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhHHHH
Confidence 99999999999999999865 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCceeEEecccCCCCCCchhHHhhHHHHHHHHHHHHHHHHHHhCCccc--EEEEeecCCCCCEEEEeC
Q 045760 502 VGQLKEFEGKKLVSATKEGLKLDESEDEKKKKETLKEKFEGLCKVIKDVLGDKVE--KVVVSDRVVDSPCCLVTG 574 (700)
Q Consensus 502 l~~L~~y~gk~f~sV~~~~~~l~~~~e~k~~~~~~~~e~~~L~~~lk~~L~~kV~--~V~vS~RL~~sPa~lv~~ 574 (700)
|++|++|+|++|+||+++++++++.+ ++.||++|. +|.+|+||++||||+++.
T Consensus 241 i~~L~e~~gk~f~sV~k~~l~l~~~~--------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 241 MNYLTEFDGKPFQSVSKVDESLEKLA--------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp TTTCCEETTEEEEETTC----------------------------------------------------------
T ss_pred HHHHHhcCCcceEEeeccccCccccc--------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 99999999999999999999876322 244677888 899999999999999763
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1e-88 Score=699.64 Aligned_cols=263 Identities=74% Similarity=1.237 Sum_probs=249.9
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeec
Q 045760 263 NKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFI 342 (700)
Q Consensus 263 N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I 342 (700)
|.++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++||++|.+...++||+||||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI 80 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFI 80 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC--------CCCEEEEETTEEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhhhhhcCCeeEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999754457999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhcccc
Q 045760 343 MDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIH 422 (700)
Q Consensus 343 ~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~lK~G~~ 422 (700)
||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~~f~~~fg~~lK~G~~ 160 (268)
T 3pry_A 81 MDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIH 160 (268)
T ss_dssp ESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHH
Q 045760 423 EDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAV 502 (700)
Q Consensus 423 ~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l 502 (700)
+|..||++|++||||+||.++++++||+||++||+++|+.|||+||+|++++++|||+|.|++||+|||||++||||+|+
T Consensus 161 eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~i 240 (268)
T 3pry_A 161 EDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCV 240 (268)
T ss_dssp HCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTHHHHH
T ss_pred CCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchHHHHH
Confidence 99999999999999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCceeEEecccCCCCCC
Q 045760 503 GQLKEFEGKKLVSATKEGLKLDE 525 (700)
Q Consensus 503 ~~L~~y~gk~f~sV~~~~~~l~~ 525 (700)
++|++|+||+|+||++++++|++
T Consensus 241 ~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 241 QQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHhcCCceeeecccccCCCcc
Confidence 99999999999999999999874
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=1.4e-88 Score=696.85 Aligned_cols=257 Identities=71% Similarity=1.134 Sum_probs=242.5
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccCCCCCCceEEEeeeeec
Q 045760 263 NKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFI 342 (700)
Q Consensus 263 N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~Ly~~rv~I 342 (700)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++|+++|++...++||+||||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI 80 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFI 80 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC----CCEEEEETTEEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhhhccCCeEEEEeeeEe
Confidence 78999999999999999999999999999999999999999999999999999999999999865557999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhhcccc
Q 045760 343 MDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIH 422 (700)
Q Consensus 343 ~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~d~e~y~~f~~~~~~~lK~G~~ 422 (700)
||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d~e~y~~f~~~fg~~lK~G~~ 160 (260)
T 1usu_A 81 TDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVH 160 (260)
T ss_dssp ESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHH
Q 045760 423 EDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAV 502 (700)
Q Consensus 423 ~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l 502 (700)
+|..||++|++||||+||+++++++||+||++|||++|+.|||+||+|++++++|||+|.|++||+|||||+|||||+||
T Consensus 161 eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i 240 (260)
T 1usu_A 161 EDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAF 240 (260)
T ss_dssp HCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHHH
T ss_pred cCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHH
Confidence 99999999999999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCceeEEeccc
Q 045760 503 GQLKEFEGKKLVSATKE 519 (700)
Q Consensus 503 ~~L~~y~gk~f~sV~~~ 519 (700)
++|++|+|++|+||+++
T Consensus 241 ~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 241 TQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHCEETTEEEEETTCC
T ss_pred HHHHhhCCceEEecccc
Confidence 99999999999999998
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=1.8e-85 Score=677.82 Aligned_cols=258 Identities=41% Similarity=0.788 Sum_probs=231.5
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHHhcCccCcccceeeecccceeeEEEEEecCCCCCCcccC--CCCCCceEEEeeee
Q 045760 263 NKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDT--RKKPNNIKLYVRRV 340 (700)
Q Consensus 263 N~~~~~W~r~~~~i~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~--~~~~~~i~Ly~~rv 340 (700)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++||++|.+ ...++||+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7899999999999999999999999999999999999999999999999999999999988652 23468999999999
Q ss_pred eccccccccccccccceeeeecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHhhhhhc
Q 045760 341 FIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAE-NKEDYNKFYESFSKNLKL 419 (700)
Q Consensus 341 ~I~d~~~~llP~~l~Fv~gvVds~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~l~~l~~-d~e~y~~f~~~~~~~lK~ 419 (700)
||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+ |+++|++||++||.+||+
T Consensus 81 fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~ 160 (263)
T 1y6z_A 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKI 160 (263)
T ss_dssp EEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred EeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred ccccChhhHHHHhccccccccCCCCceecHHHHHHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchH
Q 045760 420 GIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDE 499 (700)
Q Consensus 420 G~~~D~~~~~~l~~llrf~ss~~~~~~~sL~eYv~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe 499 (700)
|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|++++++++|||+|.|++||+|||+|++||||
T Consensus 161 G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~iDe 240 (263)
T 1y6z_A 161 GVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDE 240 (263)
T ss_dssp HHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHHHH
T ss_pred ccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcHHH
Confidence 99999999999999999999987667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--hhccCceeEEecccC
Q 045760 500 YAVGQL--KEFEGKKLVSATKEG 520 (700)
Q Consensus 500 ~~l~~L--~~y~gk~f~sV~~~~ 520 (700)
+||++| .+|+|++|+||++++
T Consensus 241 ~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 241 FCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHhhhhccCCceEEecCCCC
Confidence 999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=8e-61 Score=497.39 Aligned_cols=259 Identities=49% Similarity=0.816 Sum_probs=230.7
Q ss_pred CcccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeC
Q 045760 3 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDS 82 (700)
Q Consensus 3 ~~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~Dn 82 (700)
...+++.||+|+++||++|+++||||+++|||||||||+||++++||+++++|......+.+.|+|.+++++++|+|.||
T Consensus 21 ~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DN 100 (281)
T 3peh_A 21 ESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 100 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred hccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeC
Confidence 34689999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred CCCCCHHHHHHHHhHhhhcCchhHHHHHhc-CCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEE
Q 045760 83 GIGMTKADLVNNLGTIARSGTKEFMEALAA-GADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVT 161 (700)
Q Consensus 83 GiGMt~~dl~~~l~tIa~S~~~~f~~~~~~-~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~ 161 (700)
|+|||+++|.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|.|++.++.++.|++++++.|+|.
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~ 180 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIY 180 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEE
Confidence 999999999999999999999999999976 4577899999999999999999999999997778999999999999999
Q ss_pred eCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhh-hhccCCccccch
Q 045760 162 RDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEK-KDEEGKVEDVDE 240 (700)
Q Consensus 162 ~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 240 (700)
+.+.+++..+||+|+|||+++..+|++.++|+++|++||+||+|||+|+.+++.+++++++++++++ ++++++++++++
T Consensus 181 ~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~~~e~~~~ 260 (281)
T 3peh_A 181 KDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEET 260 (281)
T ss_dssp ECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSSEEEECCC
T ss_pred EcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhccccccccccccccc
Confidence 8654456799999999999999999999999999999999999999999999888888866644332 234455555544
Q ss_pred HHHHHhhhhccceeeecceeeec
Q 045760 241 EKEKEEKKKKKIKEVSHEWSLVN 263 (700)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~N 263 (700)
+ ++++++|++++++++|+.+|
T Consensus 261 ~--~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 261 D--DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp C--CTTCCEEEEEEEEEEEEECC
T ss_pred c--ccccCCcceEEEEEEeEecC
Confidence 3 23445678888899999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=5.5e-56 Score=451.64 Aligned_cols=206 Identities=50% Similarity=0.874 Sum_probs=187.9
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCcc-------------------------
Q 045760 4 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL------------------------- 58 (700)
Q Consensus 4 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~------------------------- 58 (700)
-.|+|+||||+++||+||+++||||++||||||||||+|||+|+| ++++++..+
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 358999999999999999999999999999999999999999999 888765432
Q ss_pred ------------CCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHhcC-CCCccccccccc
Q 045760 59 ------------DAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAG-ADVSMIGQFGVG 125 (700)
Q Consensus 59 ------------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~~~-~~~~~IG~FGIG 125 (700)
....++.|+|.+|+++++|+|.|||+|||++||.++|++||+||+++|+++++.+ .+..+|||||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVG 181 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCG
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccce
Confidence 2334679999999999999999999999999999999999999999999999865 578899999999
Q ss_pred hhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC-----CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHh
Q 045760 126 FYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT-----SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHS 200 (700)
Q Consensus 126 f~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~-----~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys 200 (700)
|||+||||++|+|+|+ .++.+|.|+|++++.|+|.+++ .++..++||+|+|||++++.+|++.++|+++|++||
T Consensus 182 FySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys 260 (272)
T 3ied_A 182 FYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYS 260 (272)
T ss_dssp GGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHC
T ss_pred eheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHH
Confidence 9999999999999999 6778999999999999999864 334679999999999999999999999999999999
Q ss_pred CCCCcceEEee
Q 045760 201 EFISYPISLWI 211 (700)
Q Consensus 201 ~~l~~PI~l~~ 211 (700)
+|++|||+++.
T Consensus 261 ~fi~~PI~l~~ 271 (272)
T 3ied_A 261 EFIKFPIEIWS 271 (272)
T ss_dssp TTCCSCEEECC
T ss_pred hCCCCCeEEEe
Confidence 99999999974
No 15
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1e-55 Score=460.14 Aligned_cols=259 Identities=53% Similarity=0.856 Sum_probs=204.2
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 045760 4 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSG 83 (700)
Q Consensus 4 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 83 (700)
-.++|.||+++++||++|+++||||+.+|||||||||+||++++||++++++......+.+.|+|.++.+..+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 45889999999999999999999999999999999999999999999999998877778899999999888999999999
Q ss_pred CCCCHHHHHHHHhHhhhcCchhHHHHHhcC-----CCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceE
Q 045760 84 IGMTKADLVNNLGTIARSGTKEFMEALAAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSF 158 (700)
Q Consensus 84 iGMt~~dl~~~l~tIa~S~~~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~ 158 (700)
+|||+++|.++|++||+||++.|+++++.+ .+..+||||||||||+||||++|+|.|++.++.++.|.+++ |.|
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~ 162 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEF 162 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCE
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEE
Confidence 999999999999999999999999888753 56789999999999999999999999999777899999999 999
Q ss_pred EEEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccCCchhhhhh--hhccCCcc
Q 045760 159 TVTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEISDDEDEEEK--KDEEGKVE 236 (700)
Q Consensus 159 ~i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 236 (700)
+|.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++.+++.+++++++++++++ ++++++.+
T Consensus 163 ~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (269)
T 1qy5_A 163 SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEA 242 (269)
T ss_dssp EEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC------------------------
T ss_pred EEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhccccccccc
Confidence 9988542235689999999999999999999999999999999999999999988777776655533211 11111112
Q ss_pred ccchHHHHHhhhhccceeeecceeeec
Q 045760 237 DVDEEKEKEEKKKKKIKEVSHEWSLVN 263 (700)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~N 263 (700)
++++++++++++++++++++++|+.+|
T Consensus 243 ~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 243 AVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp -----------------CCCEEEEECC
T ss_pred ccccccccccccCCceEEEEeeeEecC
Confidence 222222223456677888889999998
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=7.8e-55 Score=444.20 Aligned_cols=209 Identities=77% Similarity=1.163 Sum_probs=196.1
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|+++||+|+++||++|+++||||+++|||||||||+||++|+||++++++......+++.|+|.+|+++++|+|.|||+
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 95 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGI 95 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCC
Confidence 47899999999999999999999999999999999999999999999999987777778999999999999999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~ 164 (700)
|||++||.++|++||+||++.|+++++.+.+..+||||||||||+||||++|+|.|++.++.++.|++++++.|+|.+.+
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~ 175 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADH 175 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999998866678899999999999999999999999998778999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecc
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKT 214 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~ 214 (700)
+++..+||+|+|||+++..+|++.++|+++|++||+|++|||+++.+++
T Consensus 176 -~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~ 224 (239)
T 3nmq_A 176 -GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKE 224 (239)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSC
T ss_pred -CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeee
Confidence 3567899999999999999999999999999999999999999987553
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=1e-50 Score=417.78 Aligned_cols=215 Identities=77% Similarity=1.171 Sum_probs=193.8
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|++.||+|+++||++|+++||||+.+|||||||||+||++++||.+++++......+++.|+|.++.+..+|+|.|||+
T Consensus 37 ~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~ 116 (256)
T 3o0i_A 37 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 116 (256)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCC
Confidence 47899999999999999999999999999999999999999999999999987777788999999998889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~ 164 (700)
||+++||..+|++||+|+++.|.+.++.+.+...||+||+||||+|+||++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 117 GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~ 196 (256)
T 3o0i_A 117 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 196 (256)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC
T ss_pred CcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC
Confidence 99999999999999999999998888655567899999999999999999999999987778999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecccccccC
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEIS 220 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~~ 220 (700)
+.+.++||+|+|+||.+..+|++.++|+++|++||+||++||+++.+++++++++
T Consensus 197 -~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~ 251 (256)
T 3o0i_A 197 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 251 (256)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC--------
T ss_pred -CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCC
Confidence 2457899999999999999999999999999999999999999998765555544
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=6.2e-50 Score=407.57 Aligned_cols=215 Identities=77% Similarity=1.173 Sum_probs=193.1
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 045760 4 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSG 83 (700)
Q Consensus 4 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 83 (700)
+.|+++||+|+++||++|+++||+++.+|||||||||+||++++|+.+++++......+.+.|+|.++.+..+|+|.|||
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG 87 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 87 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999988776677889999999888999999999
Q ss_pred CCCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeC
Q 045760 84 IGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRD 163 (700)
Q Consensus 84 iGMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~ 163 (700)
+||+++||..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|.|++.++.++.|++.+++.|++.+.
T Consensus 88 ~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~~~ 167 (228)
T 3t0h_A 88 IGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 167 (228)
T ss_dssp CCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEEC
T ss_pred CCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEeec
Confidence 99999999999999999999999887765456789999999999999999999999998777899999999999999885
Q ss_pred CCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeeccccccc
Q 045760 164 TSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKTTEKEI 219 (700)
Q Consensus 164 ~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~~~~~~ 219 (700)
+ +....+||+|+|+||++..+|++.++|+++|++||+|+++||+++.+++.++++
T Consensus 168 ~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~ 222 (228)
T 3t0h_A 168 T-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEV 222 (228)
T ss_dssp C-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC-------
T ss_pred C-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccC
Confidence 3 245689999999999999999999999999999999999999998766544443
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=6.2e-49 Score=403.23 Aligned_cols=208 Identities=58% Similarity=0.931 Sum_probs=177.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|++.||+++++|+++|+++||++|.+|||||||||+||++++||++++++......+++.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 58899999999999999999999999999999999999999999999999887766777899999988889999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC-----CCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEE
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG-----ADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFT 159 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~-----~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~ 159 (700)
||+++||.++|++||+||++.|+++++.. .+...||+|||||||+||+|++|+|.|++.++.++.|++++ +.|+
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~~ 167 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 167 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCEE
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEEE
Confidence 99999999999999999999998887653 46679999999999999999999999998766799999998 8999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeec
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEK 213 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~ 213 (700)
+.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||++++++
T Consensus 168 i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 168 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 987532234689999999999999999999999999999999999999998753
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=5.6e-46 Score=377.75 Aligned_cols=210 Identities=69% Similarity=1.081 Sum_probs=191.7
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++......+.+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 47899999999999999999999999999999999999999999999998877666677889998887778999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~ 164 (700)
||++++|..+|++||+||++.|.++++...+...||+||+||||+|++|++|+|.|++.++.++.|.+++++.|++.+.+
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~ 162 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDE 162 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECS
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeeccc
Confidence 99999999999999999999999888765677899999999999999999999999987677999999999999998753
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecc
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKT 214 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~ 214 (700)
......+||+|+|+|++++.+|++.++|+++|++||.|+++||+++.+++
T Consensus 163 ~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~ 212 (220)
T 2wer_A 163 VNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKE 212 (220)
T ss_dssp SSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCC
T ss_pred CCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 22356899999999999999999999999999999999999999987543
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=1.1e-45 Score=384.15 Aligned_cols=209 Identities=78% Similarity=1.180 Sum_probs=191.0
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+++++++........+.|+|..+.+..+|+|.|||+
T Consensus 45 ~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~ 124 (264)
T 1yc1_A 45 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 124 (264)
T ss_dssp EEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCc
Confidence 47899999999999999999999999999999999999999999999988877666677889998888888999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCC
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDT 164 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~ 164 (700)
||+++||..+|++||+|+++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 125 GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 204 (264)
T 1yc1_A 125 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 204 (264)
T ss_dssp CCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999998888765577899999999999999999999999987667999999999999998753
Q ss_pred CCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeeecc
Q 045760 165 SGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIEKT 214 (700)
Q Consensus 165 ~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~~~ 214 (700)
.....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++.+++
T Consensus 205 -~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~ 253 (264)
T 1yc1_A 205 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKE 253 (264)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC-
T ss_pred -CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccc
Confidence 2346899999999999999999999999999999999999999987654
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=3.8e-41 Score=345.41 Aligned_cols=205 Identities=46% Similarity=0.785 Sum_probs=183.1
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 045760 5 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGI 84 (700)
Q Consensus 5 ~e~~~Fq~e~~~ll~ll~~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 84 (700)
.|++.||+++++|+++|+++||++|.+|||||||||+||++++|+..++++.+......+.|+|.++.++.+|+|.|||+
T Consensus 24 ~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~ 103 (235)
T 2ior_A 24 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 103 (235)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSS
T ss_pred cccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999888877666667889999888888999999999
Q ss_pred CCCHHHHHHHHhHhhhcCchhHHHHHhcC--CCCccccccccchhheeeecceEEEEEecCC---CceEEEEEccCceEE
Q 045760 85 GMTKADLVNNLGTIARSGTKEFMEALAAG--ADVSMIGQFGVGFYSAYLVAEKVIVTAKHND---DEQYIWESQAGGSFT 159 (700)
Q Consensus 85 GMt~~dl~~~l~tIa~S~~~~f~~~~~~~--~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~---~~~~~w~s~~~~~~~ 159 (700)
||+++||..+|++||+|+++.|.++++.. .+...+|+||+||+|+|++|++|+|.|++.+ ..++.|.+++++.|+
T Consensus 104 GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 183 (235)
T 2ior_A 104 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 183 (235)
T ss_dssp CCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEE
Confidence 99999999999999999999887665421 2356899999999999999999999999864 468999999999999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhhccHHHHHHHHHHHhCCCCcceEEeee
Q 045760 160 VTRDTSGELLGRGTKITLHLKEDQLEYLEERRLKDLIKKHSEFISYPISLWIE 212 (700)
Q Consensus 160 i~~~~~~~~~~~GT~I~L~lk~~~~e~l~~~~i~~ii~~ys~~l~~PI~l~~~ 212 (700)
+.+. ....+||+|+|+|++++.+|++.++|+++|++||+|+++||+++.+
T Consensus 184 i~~~---~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~~ 233 (235)
T 2ior_A 184 VADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR 233 (235)
T ss_dssp EEEE---CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC--
T ss_pred EeeC---CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEeccC
Confidence 9873 2458999999999999999999999999999999999999999753
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=2.1e-33 Score=259.92 Aligned_cols=114 Identities=25% Similarity=0.466 Sum_probs=105.0
Q ss_pred HHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCcccHHHHHHHHHHhcccCcccccCCCCceEEeCCCChHHHHHHHh
Q 045760 542 GLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKR 621 (700)
Q Consensus 542 ~L~~~lk~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Mer~mk~q~~~~~~~~~~~~~k~iLEINp~HplIkkL~~~ 621 (700)
.+++|||++||++|++|++|+||++||||||++++|||++|+|||++|++. ++..++||||||+||||++|.+.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999998532 35689999999999999999763
Q ss_pred hccCCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 045760 622 ADADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGNRIHRMLK 665 (700)
Q Consensus 622 ~~~d~~~~~~~~~~~~Lyd~AlL~~G~~i~dp~~f~~ri~~ll~ 665 (700)
.+++.++++|+||||+|+|++|+.++||+.|++|+|+||.
T Consensus 86 ----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 ----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred ----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 2466799999999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.78 E-value=1.4e-18 Score=186.74 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=113.7
Q ss_pred HcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 23 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 23 ~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
.....++..+|+|||+||+||+++ .|.|.++.++ ..|+|.|||+||+++++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGAT------------------RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCCC------------------eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 455678999999999999999852 4556555443 689999999999999999999888876
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCC-ceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEE-
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDD-EQYIWESQAGG-SFTVTRDTSGELLGRGTKITLH- 178 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~-~~~~w~s~~~~-~~~i~~~~~~~~~~~GT~I~L~- 178 (700)
....+ +.+. ....+|++|+|++|+++++ +++|+|+..++ .+|.|..+|+. .+.+.+. ...+||+|++.
T Consensus 81 K~~~~-~d~~---~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v~~ 151 (333)
T 1b63_A 81 KIASL-DDLE---AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEVLD 151 (333)
T ss_dssp SCCSH-HHHH---TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEEES
T ss_pred Ccccc-chhh---hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEEec
Confidence 32211 1111 2356899999999999999 79999998653 57888777665 4555542 35799999998
Q ss_pred ec---cchhhhc-----cHHHHHHHHHHHhCCCC
Q 045760 179 LK---EDQLEYL-----EERRLKDLIKKHSEFIS 204 (700)
Q Consensus 179 lk---~~~~e~l-----~~~~i~~ii~~ys~~l~ 204 (700)
|. +.++.|+ +..+|.+++++|+-.-|
T Consensus 152 Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p 185 (333)
T 1b63_A 152 LFYNTPARRKFLRTEKTEFNHIDEIIRRIALARF 185 (333)
T ss_dssp TTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccchhhhhhhccHHHHHHHHHHHHHHHhccCC
Confidence 21 2233343 23789999999997544
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.65 E-value=1.4e-16 Score=172.85 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCCCC-----chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCC
Q 045760 13 EINQLLSLIINTFYSN-----KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK-TNNSLSIIDSGIGM 86 (700)
Q Consensus 13 e~~~ll~ll~~~LYs~-----~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGM 86 (700)
-++.|-+.+++.++++ +..+|+|||+||+||++ ..|.|.+.. +...|+|.|||+||
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a------------------~~I~I~i~~~~~~~I~V~DnG~Gi 75 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA------------------TNIDLKLKDYGVDLIEVSDNGCGV 75 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCC
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC------------------CEEEEEEEeCCcEEEEEEECCCCc
Confidence 3677777788888876 58899999999999974 145555543 34689999999999
Q ss_pred CHHHHHHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCC-CceEEEEEccCceEEEEeCCC
Q 045760 87 TKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQYIWESQAGGSFTVTRDTS 165 (700)
Q Consensus 87 t~~dl~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~~~w~s~~~~~~~i~~~~~ 165 (700)
+.+++...+.++++|.... ..+.......|++|+|++|++++| +++|+|++.+ ..+|.|..+++|.+.... +
T Consensus 76 ~~~~l~~~f~~~~tsK~~~----~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~-~- 148 (365)
T 1h7s_A 76 EEENFEGLTLKHHTSKIQE----FADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT-P- 148 (365)
T ss_dssp CGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE-E-
T ss_pred CHHHHHHHhhhcccccccc----ccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec-c-
Confidence 9999998888887762211 001111245799999999999999 9999999864 458999987556554332 1
Q ss_pred CCCCCCceEEEEE-eccc---hh-hhc-----cHHHHHHHHHHHhCCCCc
Q 045760 166 GELLGRGTKITLH-LKED---QL-EYL-----EERRLKDLIKKHSEFISY 205 (700)
Q Consensus 166 ~~~~~~GT~I~L~-lk~~---~~-e~l-----~~~~i~~ii~~ys~~l~~ 205 (700)
....+||+|+++ |... ++ +|+ +..+|.+++++|+-+.|.
T Consensus 149 -~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~ 197 (365)
T 1h7s_A 149 -YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAG 197 (365)
T ss_dssp -CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTT
T ss_pred -cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCc
Confidence 245799999998 4321 12 243 457899999999987763
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.6e-16 Score=166.49 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=107.3
Q ss_pred HcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 23 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK-TNNSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 23 ~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
.....++..+|+|||+||+||++. .|.|.+.. +...|+|.|||+||+.+++...+...++|
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 81 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANAN------------------QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCS------------------EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC-
T ss_pred CCcccCHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccC
Confidence 445667889999999999999742 45555533 34689999999999999998655444433
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEE---
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLH--- 178 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~--- 178 (700)
-...+ .+.......|.+|+|++|+++|| +|+|+|++.+..++.|..+++|.+.... + ....+||+|++.
T Consensus 82 K~~~~----~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~LF 153 (367)
T 3h4l_A 82 KIAKF----QDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQLF 153 (367)
T ss_dssp ------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEESTT
T ss_pred cCCch----hhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEchhh
Confidence 21111 11112345799999999999999 6999999866678999987556554322 1 245799999995
Q ss_pred ----------eccchhhhccHHHHHHHHHHHhCCCC
Q 045760 179 ----------LKEDQLEYLEERRLKDLIKKHSEFIS 204 (700)
Q Consensus 179 ----------lk~~~~e~l~~~~i~~ii~~ys~~l~ 204 (700)
++.... +..+|.+++++|+-.-|
T Consensus 154 ~n~P~R~k~flk~~~~---e~~~i~~~l~~~Al~~p 186 (367)
T 3h4l_A 154 HNLPVRQKEFSKTFKR---QFTKCLTVIQGYAIINA 186 (367)
T ss_dssp TTCHHHHHHHHTTHHH---HHHHHHHHHHHHHHHCT
T ss_pred ccCchhhhhhccchHH---HHHHHHHHHHHHHhhCC
Confidence 233222 33689999999988755
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=154.72 Aligned_cols=161 Identities=25% Similarity=0.263 Sum_probs=106.5
Q ss_pred HHHHHH-HcCCCCchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q 045760 17 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN-NSLSIIDSGIGMTKADLVNN 94 (700)
Q Consensus 17 ll~ll~-~~LYs~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~dl~~~ 94 (700)
+...|+ ......+..+|.|||+||+||.+ ..|.|.++.++ ..|+|.|||.||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~a------------------~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAKS------------------TSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTC------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcCC------------------CEEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 344443 45567889999999999999964 14555554433 46999999999999999865
Q ss_pred HhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCC-CceEEEEEccCceE-EEEeCCCCCCCCCc
Q 045760 95 LGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHND-DEQYIWESQAGGSF-TVTRDTSGELLGRG 172 (700)
Q Consensus 95 l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~-~~~~~w~s~~~~~~-~i~~~~~~~~~~~G 172 (700)
+...++|--..+ +.+ ......|.+|+|+.|+.+|| +++|+|+..+ ..+|.|...++... .+.+ ....+|
T Consensus 78 ~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~----~~~~~G 148 (348)
T 3na3_A 78 CERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKP----CAGNQG 148 (348)
T ss_dssp TSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEE----ECCCSE
T ss_pred hccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeE----ecCCCC
Confidence 544443321111 000 11345799999999999998 8999999864 46899988764321 1333 235799
Q ss_pred eEEEEE-ec---cchhhhc-----cHHHHHHHHHHHhCCCC
Q 045760 173 TKITLH-LK---EDQLEYL-----EERRLKDLIKKHSEFIS 204 (700)
Q Consensus 173 T~I~L~-lk---~~~~e~l-----~~~~i~~ii~~ys~~l~ 204 (700)
|+|++. |. +.++.|+ +..+|.+++++|+-.-|
T Consensus 149 TtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p 189 (348)
T 3na3_A 149 TQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNA 189 (348)
T ss_dssp EEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred cEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCC
Confidence 999995 21 1222232 34789999999997654
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.20 E-value=5.8e-11 Score=118.60 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=92.2
Q ss_pred CchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhHhh
Q 045760 28 NKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL--------VNNLGTIA 99 (700)
Q Consensus 28 ~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl--------~~~l~tIa 99 (700)
++...++|||.||+||... + ....|.|.++.+ ..|+|.|||.||+.+++ ...++..-
T Consensus 17 ~~~~~v~Elv~NsiDa~~~------------g--~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~h 81 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALA------------G--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 81 (201)
T ss_dssp STHHHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-
T ss_pred ChhhhhHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeec
Confidence 3578999999999999642 0 123677777654 58999999999999883 32233332
Q ss_pred hcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEE
Q 045760 100 RSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS-FTVTRDTSGELLGRGTKITLH 178 (700)
Q Consensus 100 ~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~GT~I~L~ 178 (700)
.+|+ |-. ..-....|..|+|+.|+..++++++|+|+..+ ..|.....++.. -.+...........||+|++.
T Consensus 82 atsK--~~~----~~~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 154 (201)
T 3fv5_A 82 AGGK--FSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 154 (201)
T ss_dssp --------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred cccC--cCC----CcccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeCCEEcccceecccCCCCCCCeEEEEE
Confidence 2332 211 11123579999999999999999999998754 344333333211 122221100114799999996
Q ss_pred eccchhhh----ccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 179 LKEDQLEY----LEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 179 lk~~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
++.+.| .+..+|.+.+++|+-.-| ..|.|..
T Consensus 155 --Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 155 --PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp --ECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred --ECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 333333 467889999999985543 5666654
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.02 E-value=4.1e-10 Score=126.01 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=97.8
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK---TNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 106 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f 106 (700)
..+|+|||+||+||+..-. ..+.+.|.+..+. +...|+|.|||+||+.+++...+....++++.
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 4589999999999986310 0112344443322 23469999999999999999766654332221
Q ss_pred HHHHhcCCCCccccccccchhheeeecce-----EEEEEecCCCc-eEEEEEc------cCceEEEEeCCCCCCCCCceE
Q 045760 107 MEALAAGADVSMIGQFGVGFYSAYLVAEK-----VIVTAKHNDDE-QYIWESQ------AGGSFTVTRDTSGELLGRGTK 174 (700)
Q Consensus 107 ~~~~~~~~~~~~IG~FGIGf~S~F~vadk-----v~V~Sk~~~~~-~~~w~s~------~~~~~~i~~~~~~~~~~~GT~ 174 (700)
......|.+|+|++++..+++. +.|.|+.+++. ++.|.-. ++..+...+.+ .....+||+
T Consensus 101 -------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 172 (471)
T 1mu5_A 101 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 172 (471)
T ss_dssp -------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCEEE
T ss_pred -------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCCEE
Confidence 1224568899999999999886 99999876544 5555421 22233333321 123579999
Q ss_pred EEEEeccchhhhccHHHHHHHHHHHhC
Q 045760 175 ITLHLKEDQLEYLEERRLKDLIKKHSE 201 (700)
Q Consensus 175 I~L~lk~~~~e~l~~~~i~~ii~~ys~ 201 (700)
|++.++.+..++ ..+|.+++++|+-
T Consensus 173 V~v~l~~~~~e~--~~~I~~~l~~~al 197 (471)
T 1mu5_A 173 VAISIPGDWPKA--KSRIYEYIKRTYI 197 (471)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEcCCcchH--HHHHHHHHHHHHh
Confidence 999988665443 2588999999883
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.96 E-value=1.4e-09 Score=123.18 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=102.3
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDK---TNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 106 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f 106 (700)
..+|+|||+||+||+..- +..+.+.|.+..+. +...|+|.|||+||+.+++...+....++++.
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 457999999999998521 00124556655433 33469999999999999998766554222221
Q ss_pred HHHHhcCCCCccccccccchhheeeecc-----eEEEEEecCCCc-eEEEEE--c----cCceEEEEeCCCCCCCCCceE
Q 045760 107 MEALAAGADVSMIGQFGVGFYSAYLVAE-----KVIVTAKHNDDE-QYIWES--Q----AGGSFTVTRDTSGELLGRGTK 174 (700)
Q Consensus 107 ~~~~~~~~~~~~IG~FGIGf~S~F~vad-----kv~V~Sk~~~~~-~~~w~s--~----~~~~~~i~~~~~~~~~~~GT~ 174 (700)
......|.+|+|++++..+++ ++.|.|+.+++. ++.|.. . ++......+.+ .....+||+
T Consensus 100 -------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 171 (530)
T 2zbk_B 100 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 171 (530)
T ss_dssp -------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCEEE
T ss_pred -------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCCcE
Confidence 122456899999999999987 699999876443 555542 1 22222333321 022578999
Q ss_pred EEEEeccchhhhccHHHHHHHHHHHhCCC-CcceEEe
Q 045760 175 ITLHLKEDQLEYLEERRLKDLIKKHSEFI-SYPISLW 210 (700)
Q Consensus 175 I~L~lk~~~~e~l~~~~i~~ii~~ys~~l-~~PI~l~ 210 (700)
|++.++.+..++ ..++.+++++|+-.. ..-|.+.
T Consensus 172 V~v~l~~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~ 206 (530)
T 2zbk_B 172 VAISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFK 206 (530)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEeccchhhH--HHHHHHHHHHHHHHCCCcEEEEE
Confidence 999988765443 267899999987533 3444443
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.95 E-value=2.1e-09 Score=117.54 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=101.5
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-------HHhHhhhcC
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVN-------NLGTIARSG 102 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~-------~l~tIa~S~ 102 (700)
...|+|||.||+|+.-+ . ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+..+.|
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 45899999999999842 1 124677777654 4899999999999998753 223333333
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEEecc
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGG-SFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~-~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
.+ | .........|..|+|+.++.+++++++|+|+..+ ..|.+....+. ...+..........+||+|++. +
T Consensus 99 ~k-f----~~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~--P 170 (390)
T 1kij_A 99 GK-F----EQGAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFK--P 170 (390)
T ss_dssp SG-G----GGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEE--E
T ss_pred cc-c----cCccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEE--E
Confidence 32 2 1111123468999999999999999999998643 44544443332 2233322101114799999986 3
Q ss_pred chhhh----ccHHHHHHHHHHHhCCC-CcceEEee
Q 045760 182 DQLEY----LEERRLKDLIKKHSEFI-SYPISLWI 211 (700)
Q Consensus 182 ~~~e~----l~~~~i~~ii~~ys~~l-~~PI~l~~ 211 (700)
+...| .+..+|.+.++.++-.- ..-|.++.
T Consensus 171 d~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d 205 (390)
T 1kij_A 171 DPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQD 205 (390)
T ss_dssp CHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEe
Confidence 33333 45688999999988433 24555543
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.90 E-value=6.4e-09 Score=113.70 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=106.3
Q ss_pred HcCCC---CchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q 045760 23 NTFYS---NKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD--------L 91 (700)
Q Consensus 23 ~~LYs---~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l 91 (700)
-.+|- ++...|.|||.||+||.-. .....|.|.++.+ ..|+|.|||.||+.++ +
T Consensus 23 PgmYiGs~~~~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~ 87 (390)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAV 87 (390)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CceeecCCcHHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchh
Confidence 45663 2478999999999999631 0124677777765 4899999999999988 5
Q ss_pred HHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCC
Q 045760 92 VNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS-FTVTRDTSGELLG 170 (700)
Q Consensus 92 ~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~ 170 (700)
...|++.-.+|+ | .+..-...-|..|+|..++-.++.+++|+|+..+ .+|..+..++.. -.+..........
T Consensus 88 e~v~~~lhagsK--f----~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 88 ELILCRLHAGGK--F----SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHCTTEESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTC
T ss_pred hheeeeecccCC--c----CCCcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCC
Confidence 655665433443 2 1111123568999999999999999999998643 445444433311 1122211001126
Q ss_pred CceEEEEEeccchhhh----ccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 171 RGTKITLHLKEDQLEY----LEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 171 ~GT~I~L~lk~~~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
+||+|++. ++..-| .+..+|.+.++.++-..| .-|.|..
T Consensus 161 ~GT~V~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 161 TGTSVHFW--PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp CEEEEEEE--ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CceEEEEE--ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 89999987 333333 467889999999886543 5556553
No 33
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.78 E-value=2.9e-08 Score=108.47 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=101.8
Q ss_pred CchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhHhh
Q 045760 28 NKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD--------LVNNLGTIA 99 (700)
Q Consensus 28 ~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~tIa 99 (700)
.+...+.|||.||+||.-. . ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-
T Consensus 34 gl~~lv~ElvdNsiDea~~-g-------------~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA-G-------------HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T-------------CCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc-C-------------CCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4567899999999999642 1 123788887765 4999999999999987 444555343
Q ss_pred hcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCc---eEEEEeCCCCCCCCCceEEE
Q 045760 100 RSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGG---SFTVTRDTSGELLGRGTKIT 176 (700)
Q Consensus 100 ~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~---~~~i~~~~~~~~~~~GT~I~ 176 (700)
.+|+ | .+..-...-|..|+|.-++-.++.+++|+|+..+ ..|..+..++. ...+.. ....+||+|+
T Consensus 99 agsK--f----~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~V~ 167 (391)
T 1ei1_A 99 AGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMVR 167 (391)
T ss_dssp EESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEEEE
T ss_pred ccCC--c----CCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccEEE
Confidence 3443 2 1111123569999999999999999999998643 44444433321 111111 1247999999
Q ss_pred EEeccchhhh-----ccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 177 LHLKEDQLEY-----LEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 177 L~lk~~~~e~-----l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
+. ++...| .+..+|.+.++.++-..| .-|.|..
T Consensus 168 f~--Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 168 FW--PSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp EE--ECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EE--EChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 87 322222 356889999999886543 5566653
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.74 E-value=4.1e-08 Score=99.23 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=93.5
Q ss_pred chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhHhhh
Q 045760 29 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL--------VNNLGTIAR 100 (700)
Q Consensus 29 ~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl--------~~~l~tIa~ 100 (700)
+...++|||.||+||... + ..-.|.|.++.+ ..|+|.|||.||+.++. .-.|+..-.
T Consensus 36 l~~lv~ElvdNsiDea~~------------g--~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA------------G--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH------------S--CCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc------------C--CCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 367899999999999642 1 123677777654 58999999999998863 223433333
Q ss_pred cCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEe
Q 045760 101 SGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS-FTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 101 S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~GT~I~L~l 179 (700)
+|+ | .+..-...-|..|+|.-++=.++++++|+++..+ ..|..+...+.. ..+... +....+||+|+...
T Consensus 101 g~K--f----d~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~--g~~~~~GT~V~F~P 171 (220)
T 4duh_A 101 GGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVT--GETEKTGTMVRFWP 171 (220)
T ss_dssp SSC--C----CTTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEE--EECSCCEEEEEEEE
T ss_pred CCC--c----CCCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceec--cccCCCCcEEEEEE
Confidence 333 2 1111124569999999999999999999998654 333323222210 011111 12357999999863
Q ss_pred ccchhhh-----ccHHHHHHHHHHHhCCC-CcceEEee
Q 045760 180 KEDQLEY-----LEERRLKDLIKKHSEFI-SYPISLWI 211 (700)
Q Consensus 180 k~~~~e~-----l~~~~i~~ii~~ys~~l-~~PI~l~~ 211 (700)
+...| ++.+.|.+.++.++-.- ..-|.+++
T Consensus 172 --d~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 207 (220)
T 4duh_A 172 --SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRD 207 (220)
T ss_dssp --CTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred --CHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 33222 35678899999988332 35566654
No 35
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.73 E-value=4.5e-08 Score=106.19 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=94.2
Q ss_pred chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 29 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 29 ~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
+...++|||.||+||... .....|.|.++.++ .|+|.|||.||+. |+.- ...| +|+ |
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lha-gsK--f-- 87 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVAT-GAG--F-- 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHT-TTT--G--
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeec-CCC--c--
Confidence 467899999999999631 01247788877654 8999999999999 5542 2223 232 2
Q ss_pred HHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceE-----EEEeC-CCCCCCCCceEEEEEeccc
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSF-----TVTRD-TSGELLGRGTKITLHLKED 182 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~-----~i~~~-~~~~~~~~GT~I~L~lk~~ 182 (700)
......+..+.-| |..|+-+++.+++|+|+..+ .+|..+..++ .- ...+. +.+....+||+|++. ++
T Consensus 88 --~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~G-~~~~~~~~~~~l~~~g~~~~~GT~V~f~--Pd 160 (369)
T 3cwv_A 88 --LGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEHG-HPQGEGAAVTPMEPMPVSAERGVRVHFV--PD 160 (369)
T ss_dssp --GGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEETT-EECTTCEEESSCCCCSSCCSEEEEEEEE--EC
T ss_pred --CCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeCC-cccccccccCCceEecccCCCCCEEEEE--EC
Confidence 1101001222235 88888888899999998753 3554444432 21 02211 112235789999987 33
Q ss_pred hhhh----ccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 183 QLEY----LEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 183 ~~e~----l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
...| .+..+|.+.+++++-.-| .-|.+..
T Consensus 161 ~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 194 (369)
T 3cwv_A 161 ATIFEVLAFDRARLSRRCNELAALAPGLRVSFAD 194 (369)
T ss_dssp TTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEe
Confidence 3333 467889999999985443 5555553
No 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.69 E-value=6.5e-09 Score=119.51 Aligned_cols=156 Identities=19% Similarity=0.242 Sum_probs=97.7
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN---NSLSIIDSGIGMTKADLVNNLGTIARSGTKEF 106 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f 106 (700)
..+|+|||+||+||.... .....|.|.+..++ ..|+|.|||.||+.+++...+.... +|++ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~~-------------g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~-atsk-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEA-------------GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLL-YGSR-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCC-CC---C
T ss_pred HHHHHHHHHHHHHHHhhc-------------CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhc-cCCc-c
Confidence 568999999999998621 11224555543333 4699999999999999997654432 2221 1
Q ss_pred HHHHhcCCCCccccccccchhheeeecce-----EEEEEecCCC-ceEEEEE-----ccCceEE-EEeCCCCCCCCCceE
Q 045760 107 MEALAAGADVSMIGQFGVGFYSAYLVAEK-----VIVTAKHNDD-EQYIWES-----QAGGSFT-VTRDTSGELLGRGTK 174 (700)
Q Consensus 107 ~~~~~~~~~~~~IG~FGIGf~S~F~vadk-----v~V~Sk~~~~-~~~~w~s-----~~~~~~~-i~~~~~~~~~~~GT~ 174 (700)
. ......|..|+|+.++..+++. +.|.|+.+++ .++.+.. .+.+... ....+ ....+||+
T Consensus 104 ~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~GT~ 175 (621)
T 2q2e_B 104 H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHGTQ 175 (621)
T ss_dssp C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSCCC
T ss_pred c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCCCCCE
Confidence 0 1112348999999999998877 5899986543 5666664 3333321 12211 23579999
Q ss_pred EEEEeccchhhhcc--HHHHHHHHHHHhCCCC-cceEEee
Q 045760 175 ITLHLKEDQLEYLE--ERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 175 I~L~lk~~~~e~l~--~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
|++.++.+ |.. ...|.+.+++|+-.-| .-|.+..
T Consensus 176 V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 176 IELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp EEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred EEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 99998743 333 2567788888775443 4445443
No 37
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.67 E-value=5.3e-08 Score=106.61 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=97.9
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhHhhhc
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD--------LVNNLGTIARS 101 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d--------l~~~l~tIa~S 101 (700)
...+.|||.||+||..... ....|.|.++.++..|+|.|||.||+.++ +.-.|+..-.+
T Consensus 54 ~~lv~EivdNsiDe~~~~g-------------~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRDP-------------KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhcC-------------CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 4589999999999973211 12367777776568999999999999887 44455534333
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecC-CCceEEEEEccC-ceEEEEeCCCCCCCCCceEEEEEe
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHN-DDEQYIWESQAG-GSFTVTRDTSGELLGRGTKITLHL 179 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~-~~~~~~w~s~~~-~~~~i~~~~~~~~~~~GT~I~L~l 179 (700)
|+ |- ...-.-.-|..|+|.-++-+++.+++|+|+.. ++..|.....++ ..-....... ....+||+|++..
T Consensus 121 sK--f~----~~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~P 193 (400)
T 1zxm_A 121 SN--YD----DDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQP 193 (400)
T ss_dssp SC--CC----GGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEEE
T ss_pred CC--CC----CCcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEEE
Confidence 43 21 11112356999999999999999999999864 344554443333 1111111100 1135899999873
Q ss_pred ccchhhh----ccHHH---HHHHHHHHhCCC-CcceEEe
Q 045760 180 KEDQLEY----LEERR---LKDLIKKHSEFI-SYPISLW 210 (700)
Q Consensus 180 k~~~~e~----l~~~~---i~~ii~~ys~~l-~~PI~l~ 210 (700)
. ..-| ++.+. |.+.++.++-.- ..-|.+.
T Consensus 194 d--~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 194 D--LSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp C--GGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred C--hHHhCceeecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 3 2222 24445 667777776433 2445554
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.64 E-value=1.6e-07 Score=95.27 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=95.5
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH-------HHHHHhHhhhcC
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD-------LVNNLGTIARSG 102 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d-------l~~~l~tIa~S~ 102 (700)
...++|+|.||+|+... + ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 46789999999999742 1 123677777754 5899999999999987 553444443333
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccC----ceEE-EEeCCCCCCCCCceEEEE
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAG----GSFT-VTRDTSGELLGRGTKITL 177 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~----~~~~-i~~~~~~~~~~~GT~I~L 177 (700)
+ |-. ..-...-|..|+|.-++=.++.+++|+++..+ ..|..+...+ .... +.+. .....||+|+.
T Consensus 107 K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V~F 176 (226)
T 4emv_A 107 K--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKVTF 176 (226)
T ss_dssp -----------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEEEE
T ss_pred c--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEEEE
Confidence 3 311 11134569999999999999999999998754 3343333322 1111 2221 12579999998
Q ss_pred Eeccch--hhhccHHHHHHHHHHHhCCC-CcceEEee
Q 045760 178 HLKEDQ--LEYLEERRLKDLIKKHSEFI-SYPISLWI 211 (700)
Q Consensus 178 ~lk~~~--~e~l~~~~i~~ii~~ys~~l-~~PI~l~~ 211 (700)
...... ..-++.+.|...++.++-.- ..-|.+++
T Consensus 177 ~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 213 (226)
T 4emv_A 177 MPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTD 213 (226)
T ss_dssp EECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred EECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 633221 11246778888898888432 35667665
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.42 E-value=1.7e-06 Score=94.72 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=92.7
Q ss_pred HcCCC---CchhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------
Q 045760 23 NTFYS---NKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL-------- 91 (700)
Q Consensus 23 ~~LYs---~~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl-------- 91 (700)
-.+|- ++...+.|+|.||+|+.-. + ..-.|.|.++.+ ..|+|.|||.||+.+..
T Consensus 42 PgMYiGst~~~hlv~EivdNsiDea~a------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 42 PGMYTDTARPNHLAQEVIDNSVDEALA------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CccEECCCCcchhhHHHHHHHHHHhhc------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcch
Confidence 45665 4578999999999999631 1 123677777654 58999999999998762
Q ss_pred HHHHhHhhhcCchhHHHHHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccC---ceEE-EEeCCCCC
Q 045760 92 VNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAG---GSFT-VTRDTSGE 167 (700)
Q Consensus 92 ~~~l~tIa~S~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~---~~~~-i~~~~~~~ 167 (700)
.-.|+..-.+|+ |-. ..-...-|..|+|.-++=.++.+++|+++..+ ..|..+...+ .... +.+. .
T Consensus 107 e~i~t~lhaggK--fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~~---~ 176 (408)
T 3lnu_A 107 ELILTRLHAGGK--FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGTV---G 176 (408)
T ss_dssp HHHHHCC--------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEEC---C
T ss_pred heEEEecccCCC--cCC----CceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEeccC---c
Confidence 323433333333 311 11123569999999999999999999998654 3333332222 1111 2221 1
Q ss_pred CCCCceEEEEEeccch--hhhccHHHHHHHHHHHhCCCC-cceEEee
Q 045760 168 LLGRGTKITLHLKEDQ--LEYLEERRLKDLIKKHSEFIS-YPISLWI 211 (700)
Q Consensus 168 ~~~~GT~I~L~lk~~~--~e~l~~~~i~~ii~~ys~~l~-~PI~l~~ 211 (700)
....||+|+....... ..-++.+.|...++.++-..+ .-|.|++
T Consensus 177 ~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 177 KKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp TTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 2478999998633221 111467788888888775433 5666654
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.20 E-value=8.9e-06 Score=80.79 Aligned_cols=142 Identities=19% Similarity=0.224 Sum_probs=84.6
Q ss_pred chhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 29 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 29 ~~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
+...++|||.||+|+.-. . ....|.|.++.+ ..|+|.|||.||+.+ .++.|+.... +
T Consensus 32 l~~~v~Elv~NsiD~~~a-g-------------~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e 88 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA-G-------------YANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-------------SCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H
T ss_pred hHHHHHHHHHHHHhHHhc-C-------------CCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c
Confidence 467899999999998531 1 123667766654 499999999999986 2334433221 1
Q ss_pred HHhcCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEeccchhhh-
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGS-FTVTRDTSGELLGRGTKITLHLKEDQLEY- 186 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~-~~i~~~~~~~~~~~GT~I~L~lk~~~~e~- 186 (700)
.+ |+ .-++=.++.+++|+|+..+ ..|..+...+.. ..+... +....+||+|+.. ++..-|
T Consensus 89 ---------~i--~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~--Pd~~iF~ 150 (198)
T 3ttz_A 89 ---------VI--LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFK--ADGEIFT 150 (198)
T ss_dssp ---------HH--HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEE--ECTTTCC
T ss_pred ---------cc--ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEE--ECHHHhc
Confidence 11 22 2223446689999998754 344333332211 111111 1234799999986 444444
Q ss_pred ----ccHHHHHHHHHHHhCCC-CcceEEee
Q 045760 187 ----LEERRLKDLIKKHSEFI-SYPISLWI 211 (700)
Q Consensus 187 ----l~~~~i~~ii~~ys~~l-~~PI~l~~ 211 (700)
.+...|.+.++.++-.- ..-|.|+.
T Consensus 151 ~~~~~~~~~l~~rlrelA~ln~gv~i~l~d 180 (198)
T 3ttz_A 151 ETTVYNYETLQQRIRELAFLNKGIQITLRD 180 (198)
T ss_dssp SCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cCCccCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 46788999999998432 35566654
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.01 E-value=2.1e-05 Score=86.48 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=92.9
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhHhhhcC
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL--------VNNLGTIARSG 102 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl--------~~~l~tIa~S~ 102 (700)
..+.|+|.||+|+..... ..-.|.|.++.++..|+|.|||.||+.+.. .-.|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~~g-------------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRDP-------------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhcC-------------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 379999999999984211 124678888776689999999999987652 22344443444
Q ss_pred chhHHHHHhcCCCCccccccccchhheeeecceEEEEEec-CCCceEEEEEccC-----ceEEEEeCCCCCCCCCceEEE
Q 045760 103 TKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKH-NDDEQYIWESQAG-----GSFTVTRDTSGELLGRGTKIT 176 (700)
Q Consensus 103 ~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~-~~~~~~~w~s~~~-----~~~~i~~~~~~~~~~~GT~I~ 176 (700)
+-+ .+.-.-.-|.-|||.-.+=.++.+++|+++. .++..|..+...+ .. .+... ....+||+|+
T Consensus 134 Kfd------~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~V~ 203 (418)
T 1pvg_A 134 NYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTKVT 203 (418)
T ss_dssp CCC------TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEEEE
T ss_pred ccC------CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceEEE
Confidence 311 1111234599999998888999999999985 3444443222211 11 23331 1246899999
Q ss_pred EEeccchh--hhccHHH---HHHHHHHHhCCC-CcceEEe
Q 045760 177 LHLKEDQL--EYLEERR---LKDLIKKHSEFI-SYPISLW 210 (700)
Q Consensus 177 L~lk~~~~--e~l~~~~---i~~ii~~ys~~l-~~PI~l~ 210 (700)
.....+.. .-++.+. |...++..+-.. ..-|.++
T Consensus 204 F~PD~~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~ 243 (418)
T 1pvg_A 204 FKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLN 243 (418)
T ss_dssp EEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEET
T ss_pred EEEChHHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 87544321 1123444 344454443222 3556665
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.60 E-value=4e-05 Score=70.70 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=48.5
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHH
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 110 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~ 110 (700)
.++.+||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..+++
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-~~~~~------- 102 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDR-GQRVD------- 102 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSC-CCCTT-------
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhcc-ceecc-------
Confidence 367899999998863 134555555555567999999999999887743321 11111
Q ss_pred hcCCCCccccccccchhheeeecc
Q 045760 111 AAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 111 ~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
..-+..|+|++.+-.+++
T Consensus 103 ------~~~~g~GlGL~i~~~~~~ 120 (152)
T 1id0_A 103 ------TLRPGQGVGLAVAREITE 120 (152)
T ss_dssp ------CCCTTCCSCHHHHHHHHH
T ss_pred ------CCCCCcccCHHHHHHHHH
Confidence 112568999987766544
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.52 E-value=4e-05 Score=74.87 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+.+.. ....|.|.+.... |.|.|||.||+.+++...+.... +++
T Consensus 121 il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~-~~~-------- 173 (222)
T 3jz3_A 121 LVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFY-RPP-------- 173 (222)
T ss_dssp HHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC---------------------------
T ss_pred HHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhc-cCC--------
Confidence 67899999998853 1234666665433 99999999999998875443221 111
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLK 180 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk 180 (700)
...-+..|+|++-+-.++... +|.+.+.. ..+.||+|++++-
T Consensus 174 ----~~~~~g~GlGL~i~~~i~~~~------------------gG~i~i~s-----~~~~Gt~v~~~~P 215 (222)
T 3jz3_A 174 ----GQTATGSGLGLSIVQRIAKLH------------------GMNVEFGN-----AEQGGFEAKVSWL 215 (222)
T ss_dssp ------------CTHHHHHHHHHHT------------------TCEEECCB-----CTTSSBEEEEECC
T ss_pred ----CCCCCcccccHHHHHHHHHHc------------------CCEEEEEc-----CCCCcEEEEEeec
Confidence 112246899998776655421 12333332 2467999998875
No 44
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.47 E-value=8.6e-05 Score=68.50 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+.+... ..+.|.+..+.+.-.|+|.|||.||+.+++.+.+....++.+
T Consensus 50 il~nLl~NA~~~~~~---------------~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~-------- 106 (150)
T 1ysr_A 50 AVDNAIANAVKHGGA---------------TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST-------- 106 (150)
T ss_dssp HHHHHHHHHHHTTCC---------------SEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------
T ss_pred HHHHHHHHHHhcCCC---------------cEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC--------
Confidence 678999999887521 234455545555567999999999999998865433221111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
..-+..|+|++.+-.+++
T Consensus 107 -----~~~~g~GlGL~i~~~~~~ 124 (150)
T 1ysr_A 107 -----ASHSGSGLGLALVAQQAQ 124 (150)
T ss_dssp ------------CCCHHHHHHHH
T ss_pred -----CCCCCCCcCHHHHHHHHH
Confidence 112467999987766654
No 45
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.46 E-value=9e-05 Score=71.34 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH
Q 045760 33 LRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLV 92 (700)
Q Consensus 33 lRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~ 92 (700)
|.+||.||+.+............ ......+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~~--~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAKG--KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHT--SCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhhhcccccccccc--CCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 89999999999621000000000 00112234444444444569999999999999874
No 46
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.45 E-value=0.00012 Score=74.00 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=47.3
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..++
T Consensus 159 il~nLl~NA~~~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-~~~~--------- 214 (268)
T 4ew8_A 159 TLDHLVENALRQTPP--------------GGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDR-FVGR--------- 214 (268)
T ss_dssp HHHHHHHHHHHHSCT--------------TCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTST-TCCC---------
T ss_pred HHHHHHHHHHHhCCC--------------CCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHH-HhcC---------
Confidence 688999999988631 1234555555544557999999999999887643321 1111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
.-+..|+|++.+-.++.
T Consensus 215 ------~~~g~GlGL~i~~~~~~ 231 (268)
T 4ew8_A 215 ------DRGGPGLGLALVKALVE 231 (268)
T ss_dssp ------SSCCCTTHHHHHHHHHH
T ss_pred ------CCCCCcccHHHHHHHHH
Confidence 11467999987765544
No 47
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.42 E-value=0.00017 Score=78.26 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=63.4
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|.+||.||+.|....... ....+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|... .++...- ..
T Consensus 235 il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f-~~~~~~~--~~- 303 (394)
T 2btz_A 235 MLFELFKNAMRATVESHES-------SLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYM-YSTAPTP--QP- 303 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTT-------CSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTT-TTCCC-------
T ss_pred HHHHHHHHHHHHhhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhccc-ccCCCCC--Cc-
Confidence 7889999999998642100 01113455555555445569999999999999998654332 2221100 00
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
+......+.+|+|++-|-.+++.. +|...+... .+.||+++|+|..
T Consensus 304 -~~~~~~~~G~GLGL~i~~~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 -GTGGTPLAGFGYGLPISRLYAKYF------------------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp -----------CCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -ccCCCCCCCccCCHHHHHHHHHHh------------------CCEEEEEec-----CCCceEEEEEecC
Confidence 001223567899998776665421 233334331 2569999999863
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.41 E-value=0.00016 Score=66.65 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=50.4
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
..++.|||.||+.+.... .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+.. ..+++
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~-~~~~~------ 100 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQP-LFTTK------ 100 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCC-C----------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcc-cccCC------
Confidence 447899999999876320 01123455555555556799999999999 55533221 11110
Q ss_pred HhcCCCCccccccccchhheeeecceEEEEE
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAEKVIVTA 140 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vadkv~V~S 140 (700)
...+..|+|++-+-.+++++.+.+
T Consensus 101 -------~~~~~~GlGL~iv~~~~~~i~~~~ 124 (145)
T 1th8_A 101 -------PELERSGMGFTIMENFMDEVIVES 124 (145)
T ss_dssp ----------CCCSCHHHHHHHHSSEEEEEE
T ss_pred -------CCCCCCcchHHHHHHHHheEEEEe
Confidence 012457999988877777555544
No 49
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.38 E-value=0.00016 Score=71.64 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..+++
T Consensus 127 il~nLl~NA~~~~~~--------------~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~-~~~~~-------- 183 (244)
T 3d36_A 127 CLLNVMKNAIEAMPN--------------GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEP-YFTTK-------- 183 (244)
T ss_dssp HHHHHHHHHHHTCTT--------------CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTST-TCCSS--------
T ss_pred HHHHHHHHHHHhccC--------------CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcc-cccCC--------
Confidence 678899999888631 1234555555555567999999999999988754322 11111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
..+..|+|++.+-.+++
T Consensus 184 ------~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 184 ------GVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ------GGGCCSCHHHHHHHHHH
T ss_pred ------CCCCcchhHHHHHHHHH
Confidence 12457999988766654
No 50
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.38 E-value=0.00019 Score=78.03 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=67.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|... .++...- ..
T Consensus 234 il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f-~~~~~~~--~~- 302 (394)
T 2e0a_A 234 MLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT-YSTAPTP--VM- 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTT-CCSSCCC-----
T ss_pred HHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcC-ccCCCCC--Cc-
Confidence 78899999999986421100 1123455555555455679999999999999998654332 2221100 00
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
+.......+.+|+|++-|-.+++.. +|...+... .+.||+++|+|..
T Consensus 303 ~~~~~~~~~G~GLGL~i~~~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 DNSRNAPLAGFGYGLPISRLYAKYF------------------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp ----CCCSSCSSCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHh------------------CCEEEEEec-----CCccEEEEEEeCC
Confidence 0001234577899998776665411 123333331 2579999999863
No 51
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.36 E-value=0.00014 Score=66.77 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+... .++
T Consensus 51 il~nll~NAi~~~~~--------------~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~-~~~--------- 106 (152)
T 3a0y_A 51 VLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF-FTT--------- 106 (152)
T ss_dssp HHHHHHHHHHHHHCT--------------TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTT-CCC---------
T ss_pred HHHHHHHHHHHhcCC--------------CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhh-ccC---------
Confidence 688999999988731 12344444444444569999999999999877433221 111
Q ss_pred cCCCCccccccccchhheeeec
Q 045760 112 AGADVSMIGQFGVGFYSAYLVA 133 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~va 133 (700)
.-+..|+|++.+-.++
T Consensus 107 ------~~~g~GlGL~i~~~~~ 122 (152)
T 3a0y_A 107 ------KTQGTGLGLSICRKII 122 (152)
T ss_dssp ------C--CCCCSHHHHHHHH
T ss_pred ------CCCCCCcCHHHHHHHH
Confidence 1145799998775554
No 52
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.36 E-value=0.00023 Score=77.72 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|.+||.||+.|.....-. + ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|... .++... ...
T Consensus 247 il~NLl~NAik~t~~~~~~---~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f-~~~~~~--~~~- 315 (407)
T 2q8g_A 247 MVFELFKNAMRATMEHHAN---R----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYM-YSTAPR--PRV- 315 (407)
T ss_dssp HHHHHHHHHHHHHHHHSTT---T----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TTCCCC--CCS-
T ss_pred HHHHHHHHHHHHHhhcccc---C----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCcc-ccCCCC--CCc-
Confidence 6889999999998642100 0 1123455555555445669999999999999988544322 221110 000
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
+.......|.+|+|++-|-.+++.. +|...+... .+.||+++|+|..
T Consensus 316 ~~~~~~~~~G~GLGL~Ivr~i~~~~------------------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 316 ETSRAVPLAGFGYGLPISRLYAQYF------------------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp SCCSCCCSSCTTCHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHh------------------CCEEEEEEc-----CCCceEEEEEECC
Confidence 0001234578999998776665421 123334331 3579999999853
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.33 E-value=0.0001 Score=66.77 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=32.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL 91 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 91 (700)
+++||++||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcCC---------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 67899999987752 1234555555555567999999999997644
No 54
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.32 E-value=0.00022 Score=78.32 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=65.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|.+||.||+.|.....-. .+ ...+.+.|.+..+.+.-.|+|.|||.||+++++.+.|... .++... ..+.
T Consensus 257 vl~NLl~NAik~~~~~~~~---~~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f-~~~~~~--~~~~ 327 (419)
T 1y8o_A 257 MLFELFKNSMRATVELYED---RK---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYM-YSTAPR--PSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CS---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TC----------
T ss_pred HHHHHHHHHHHHHHhhccc---cC---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcc-cccCCC--CCcc
Confidence 7899999999998642210 00 0012455555555455679999999999999988544322 222110 0000
Q ss_pred cCCCCccccccccchhheeeecceEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAEKVIVTAKHNDDEQYIWESQAGGSFTVTRDTSGELLGRGTKITLHLKE 181 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~~~~~~~~w~s~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 181 (700)
.......+.+|+|++-|-.+++.. +|...+... .+.||+++|+|..
T Consensus 328 -~~~~~~~~G~GLGL~I~k~iv~~~------------------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 328 -PTRAAPLAGFGYGLPISRLYARYF------------------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ------CC--CTTHHHHHHHHHHHT------------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -ccCCCCcCCeecCHHHHHHHHHHh------------------CCEEEEEec-----CCCCEEEEEEecC
Confidence 001234567999998776665421 133334331 2579999999863
No 55
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.31 E-value=7.9e-05 Score=70.96 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTN--NSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
+|.+||.||+.+... ...+.|.+.....+ -.|+|.|||.||+.+++...+... .++..
T Consensus 47 il~nLl~NAi~~~~~--------------~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~-~~~~~----- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSPE--------------GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRF-YRVDK----- 106 (177)
T ss_dssp HHHHHHHHHHHTCCT--------------TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTT-CCCC------
T ss_pred HHHHHHHHHHHhCCC--------------CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhh-ccCCC-----
Confidence 688999999988631 13455666444333 458999999999998877443322 22111
Q ss_pred HhcCCCCccccccccchhheeeecc
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
......+..|+|++.+-.++.
T Consensus 107 ----~~~~~~~g~GlGL~iv~~~~~ 127 (177)
T 3sl2_A 107 ----ARTRKLGGTGLGLAIAKEMVQ 127 (177)
T ss_dssp ---------CCCCCCHHHHHHHHHH
T ss_pred ----CCCCCCCCCCcCHHHHHHHHH
Confidence 011223578999987766544
No 56
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.31 E-value=0.00016 Score=70.78 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADL 91 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl 91 (700)
+++||+.||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 68899999987752 1234555555555567999999999998765
No 57
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.26 E-value=0.00013 Score=73.49 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 109 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~ 109 (700)
++..||+||+.+... ..+...|.|.+ ..+.-.|+|.|||.||+.+++.+.|.... ++...
T Consensus 142 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~~~~---- 203 (258)
T 2c2a_A 142 VLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFY-RVDSS---- 203 (258)
T ss_dssp HHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTC-CCC------
T ss_pred HHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccc-cCCCC----
Confidence 678899999888631 11123455544 43445689999999999998875443321 11110
Q ss_pred HhcCCCCccccccccchhheeeecc
Q 045760 110 LAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 110 ~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
...-.+..|+|++-|-.+++
T Consensus 204 -----~~~~~~G~GLGL~i~~~iv~ 223 (258)
T 2c2a_A 204 -----LTYEVPGTGLGLAITKEIVE 223 (258)
T ss_dssp ------------CCCTHHHHHHHHH
T ss_pred -----CCCCCCCcchHHHHHHHHHH
Confidence 01122457999987766544
No 58
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.23 E-value=0.00019 Score=77.80 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=53.8
Q ss_pred hHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchh-----
Q 045760 31 IFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKE----- 105 (700)
Q Consensus 31 iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~----- 105 (700)
.+|.+||.||+.|.....-. . ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|.. ..+++..
T Consensus 241 ~il~NLl~NAik~~~~~~~~---~---~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~~~~~~ 313 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD---T---PYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDY-HFTTAEASTQDP 313 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT---C---TTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTST-TCCCC-------
T ss_pred HHHHHHHHHHHHHhhccccC---C---CCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCc-ccccCCCccccc
Confidence 47899999999998642100 0 0011345555555545566999999999999988754332 2222211
Q ss_pred -----HHHHHhc--CCCCccccccccchhheeeecc
Q 045760 106 -----FMEALAA--GADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 106 -----f~~~~~~--~~~~~~IG~FGIGf~S~F~vad 134 (700)
|. .+.. .......+..|+|++-|-.+++
T Consensus 314 ~~~~~~~-~~~~~~~~~~~~~~G~GLGL~i~r~i~~ 348 (388)
T 1gkz_A 314 RISPLFG-HLDMHSGGQSGPMHGFGFGLPTSRAYAE 348 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHH
T ss_pred ccccchh-hcccccccCCCCcCCccCCHHHHHHHHH
Confidence 00 0000 0112345678999987766654
No 59
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.22 E-value=0.00011 Score=68.85 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHHHHh
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 111 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~~~~ 111 (700)
+|.+||+||+.+. ...+.|.+..+.+.-.|.|.|||.||+.+++...+.. ..+++
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-f~~~~-------- 105 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQP-FVRGD-------- 105 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCC-CCCCS--------
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCC-ceeCC--------
Confidence 6788888887664 1245566655555567999999999999887743322 11111
Q ss_pred cCCCCccccccccchhheeeecc
Q 045760 112 AGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 112 ~~~~~~~IG~FGIGf~S~F~vad 134 (700)
....-+..|+|++-+-.+++
T Consensus 106 ---~~~~~~g~GlGL~i~~~~~~ 125 (161)
T 1bxd_A 106 ---SARTISGTGLGLAIVQRIVD 125 (161)
T ss_dssp ---CCCCCCCCSCCCCTTHHHHH
T ss_pred ---CCCCCCCcccCHHHHHHHHH
Confidence 11112568999987766654
No 60
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0044 Score=76.08 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=82.3
Q ss_pred hHHHHHHhcHHh-HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH--------HHHHHHhHhhhc
Q 045760 31 IFLRELISNSSD-ALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKA--------DLVNNLGTIARS 101 (700)
Q Consensus 31 iflRELIqNA~D-A~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~--------dl~~~l~tIa~S 101 (700)
..+-|.|.||+| |++ + ...-.|.|+++.+++.|+|.|||-||+-+ -+.-.|++.-.+
T Consensus 62 hl~~EildNsiDea~a--------g------~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------D------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------C------TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------C------CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 357899999999 543 1 11236888888778999999999999853 122223333334
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecceEEEEEec-CCCceEEEEEc-cCc---eEEEEeCCCCCCCCCceEEE
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTAKH-NDDEQYIWESQ-AGG---SFTVTRDTSGELLGRGTKIT 176 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~Sk~-~~~~~~~w~s~-~~~---~~~i~~~~~~~~~~~GT~I~ 176 (700)
|+-+ .+.-.-.-|.-|||.--+=.++.++.|++.. .++..|..+.. |.. .-.+... .....||+|+
T Consensus 128 gKFd------~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~V~ 198 (1177)
T 4gfh_A 128 SNYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTKVT 198 (1177)
T ss_dssp SCCC------CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEEEE
T ss_pred cCcC------CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceEEE
Confidence 4311 1111224599999987666778887777753 23333332222 211 1122221 2346899998
Q ss_pred EEeccchh--hhccHHHHHHHHHHHh
Q 045760 177 LHLKEDQL--EYLEERRLKDLIKKHS 200 (700)
Q Consensus 177 L~lk~~~~--e~l~~~~i~~ii~~ys 200 (700)
........ .-++.+.+....++.+
T Consensus 199 F~PD~~iF~~~~~~~d~l~~~~r~~~ 224 (1177)
T 4gfh_A 199 FKPDLTRFGMKELDNDILGVMRRRVY 224 (1177)
T ss_dssp EEECHHHHTCSSCCHHHHHHHHHHHH
T ss_pred EEeCHHhcCCcEeCHHHHHHHHHHHH
Confidence 76543210 1134555555555443
No 61
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.95 E-value=0.00027 Score=63.35 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=31.2
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD 90 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d 90 (700)
++.|||.||..+.. ...+.|++..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHAA---------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCSS---------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhCC---------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 57888899887752 1245666666666 6799999999998654
No 62
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.94 E-value=0.00062 Score=73.78 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHhcHHhHHH----hhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHH
Q 045760 33 LRELISNSSDALD----KIRFESLTDKSKLDAQPELFIHIIP--DKTNNSLSIIDSGIGMTKADLV 92 (700)
Q Consensus 33 lRELIqNA~DA~~----k~~~~~l~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~dl~ 92 (700)
|.+||.||+|++- .|... +......|.|.. +.+.-.|+|.|||.||+.+.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 8999999999972 11111 112234565554 4344568999999999999874
No 63
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.00052 Score=61.15 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=31.3
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKAD 90 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~d 90 (700)
+++||+.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 43 il~nll~Na~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHAN---------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCTT---------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 67888999876652 1235566655556 7799999999999765
No 64
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.67 E-value=0.001 Score=61.33 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC----------CCEEEEEeCCCCCCHHHHHHHHhHhhhc
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT----------NNSLSIIDSGIGMTKADLVNNLGTIARS 101 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~~dl~~~l~tIa~S 101 (700)
++.+||.||+.+.... ...+.|.+..+.. .-.|+|.|||.||+.+++...+... .+
T Consensus 52 il~nLl~NAik~~~~~-------------~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~-~~ 117 (160)
T 1r62_A 52 VLLNIVRNALQALGPE-------------GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPM-VS 117 (160)
T ss_dssp HHHHHHHHHHHHHGGG-------------CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------
T ss_pred HHHHHHHHHHHHhhcc-------------CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCcc-cc
Confidence 6789999999987420 1223444443333 3468999999999999887543221 11
Q ss_pred CchhHHHHHhcCCCCccccccccchhheeeecc
Q 045760 102 GTKEFMEALAAGADVSMIGQFGVGFYSAYLVAE 134 (700)
Q Consensus 102 ~~~~f~~~~~~~~~~~~IG~FGIGf~S~F~vad 134 (700)
++ -+..|+|++.+-.+++
T Consensus 118 ~~---------------~~g~GlGL~i~~~~~~ 135 (160)
T 1r62_A 118 GR---------------EGGTGLGLSIARNLID 135 (160)
T ss_dssp ---------------------CHHHHHHHHHHH
T ss_pred CC---------------CCCCccCHHHHHHHHH
Confidence 10 1457999987766544
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.58 E-value=0.0008 Score=70.23 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIGMTKADLVN 93 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~dl~~ 93 (700)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||+||+.+++.+
T Consensus 248 vl~nLl~NA~k~~~~--------------~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTCT--------------TCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhccC--------------CCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 688999999988621 134555555555556799999999999987764
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=95.36 E-value=0.0098 Score=60.08 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=29.1
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCC--CCHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLSIIDSGIG--MTKADLV 92 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~~dl~ 92 (700)
++.=||+||.+|.. ....+.|.+..+.+...|+|.|+|.| ++++.+.
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 34567777777652 12334555555555567999999977 5554444
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=86.38 E-value=0.69 Score=50.05 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=41.9
Q ss_pred hhHHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhHhhhcCchhHHH
Q 045760 30 EIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKT-NNSLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 108 (700)
Q Consensus 30 ~iflRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~dl~~~l~tIa~S~~~~f~~ 108 (700)
..++.||+.||+...-. + .....+.|++..+.+ .-.|+|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~-------~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA-------T----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC-------S----CCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhccc-------C----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 35899999999988621 0 112345666655533 3569999999999865 10
Q ss_pred HHhcCCCCccccccccchhheeeecceEEEEE
Q 045760 109 ALAAGADVSMIGQFGVGFYSAYLVAEKVIVTA 140 (700)
Q Consensus 109 ~~~~~~~~~~IG~FGIGf~S~F~vadkv~V~S 140 (700)
. +.-|.|++-+=.+|+++.+.+
T Consensus 351 ------~----~~~G~GL~lv~~l~~~~~~~~ 372 (399)
T 3ke6_A 351 ------A----RGRGRGLAMAEALVSEARIMH 372 (399)
T ss_dssp ----------------CHHHHHTTSSEEEEEE
T ss_pred ------C----CCCCcHHHHHHHHHHheeeEE
Confidence 0 234677777777778776543
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=71.63 E-value=2.6 Score=41.05 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=35.9
Q ss_pred HHHHHHhcHHhHHHhhhhhhccCCCccCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHHHH
Q 045760 32 FLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD--KTNNSLSIIDSGIGMTKADLVNN 94 (700)
Q Consensus 32 flRELIqNA~DA~~k~~~~~l~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~dl~~~ 94 (700)
-+-.|+.||.+|+.... .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.
T Consensus 109 ~lgnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~i 165 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDI 165 (192)
T ss_dssp HHHHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--
T ss_pred HHHHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHH
Confidence 45679999999986420 11 1123445555554 45567999999999999876643
No 69
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=30.97 E-value=62 Score=35.08 Aligned_cols=51 Identities=10% Similarity=0.309 Sum_probs=40.9
Q ss_pred HHhhccCCCcEEEEeCCCHHHHhcChhHHHHHHcCCEEEEeCCCchHHHHHHH
Q 045760 453 VTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQL 505 (700)
Q Consensus 453 v~rm~~~q~~IYy~~~~~~~~~~~sp~le~~~~kg~eVL~l~dpiDe~~l~~L 505 (700)
++++|..|+..-|..++-..++.- .|..|++.|++|||..-||-.-|....
T Consensus 257 ~~~~K~~~k~~~y~~SpEy~Dlql--~L~~~k~~~~~vlfVi~PVNgkWydyt 307 (407)
T 3bma_A 257 LKKLKDSQKSFTYLKSPEYNDLQL--VLTQFSKSKVNPIFIIPPVNKKWMDYA 307 (407)
T ss_dssp HHHHTTTTTTCCCSSCTHHHHHHH--HHHHHHHTTCEEEEEECCCCHHHHHHT
T ss_pred HHHhcCcccCCCcccCccHHHHHH--HHHHHHHcCCceEEEEeCCchHHHHhc
Confidence 344566788888887776666654 899999999999999999999888763
Done!