BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045762
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 250 YFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHER 309
+F F+ L YS +F D+ F ++YI A I I + R +H++
Sbjct: 116 FFSSGFMANLAIYSTLFSKHDSIFA---------DKYIHASIIDGIKLSQAKLRRYKHQQ 166
Query: 310 LEKWRKIMEGKGF---RGVPLSANAVTQ 334
L + + I +GK F GV ++ ++TQ
Sbjct: 167 LSQLQDIYDGKSFITTEGVFSTSGSITQ 194
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
ITG+ T G C+ + L +P +F VGE +EDL+P
Sbjct: 248 ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 290
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
ITG+ T G C+ + L +P +F VGE +EDL+P
Sbjct: 305 ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQP 347
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TG T G C+ + L +P +F VGE ++DL+P
Sbjct: 264 VTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQP 306
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 19/136 (13%)
Query: 244 ASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRN-IVACEGGE 302
S+ P +E L S FD L ++ K+E Y+ A E N VA E +
Sbjct: 585 VSNGNPLVTREDIEKLDSGSITFDDL--------VRQGKIE-YLDAEEEENAYVALEPSD 635
Query: 303 RTARHERLEKWRKIMEGKGFRGVPL-----SANAVTQS---KILLGLYSCDGYRLTEDNG 354
T H LE W + G +P S QS K LGLY+ + Y+L D
Sbjct: 636 LTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAAN-YQLRTDTR 694
Query: 355 CLLLGWQDRALLAASA 370
LL + R L+ A
Sbjct: 695 AHLLHYPQRPLVQTRA 710
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 151 LRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+ +TG+ T G +A L +P +F VGE+ EDL+P
Sbjct: 249 VNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRP 293
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TGV T G L + +L VP +F VGE +DL+P
Sbjct: 249 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQP 291
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TGV T G L + +L VP +F VGE +DL+P
Sbjct: 249 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQP 291
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TGV T G L + +L VP +F VGE +DL+P
Sbjct: 248 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQP 290
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TGV T G L + +L VP +F VGE +DL+P
Sbjct: 229 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQP 271
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TGV T G L + +L VP +F VGE +DL+P
Sbjct: 228 LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQP 270
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TG+ T G + +A +P + VGE++EDL+P
Sbjct: 246 LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRP 288
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TG+ T G + +A +P + VGE++EDL+P
Sbjct: 245 LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRP 287
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TG+ T G + +A +P + VGE++EDL+P
Sbjct: 240 LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRP 282
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 112 FEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKET--GRC 169
FE A R +ID+D+ +++ALA G A GVG + + + T GR
Sbjct: 153 FELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDA-----LGVGGHVTALRRTRVGRF 207
Query: 170 LTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRV-----------GEALAVNAVNRLHRVP 218
+ A SL E + L++ MF RR G +L ++ ++
Sbjct: 208 ELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVY-AA 266
Query: 219 SNCLGNLLAMIRDQAPNI--VTIVEQEASHNGPYFLGRFLEALH 260
+ G ++A++RD+ V ++ H G G+ AL
Sbjct: 267 CDADGRVIALLRDEGSRTRSVAVLRPATMHPGGVPRGKLAAALE 310
>pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
A Glycosyltransferase Catalysing The Production Of Large
Cyclic Glucans
pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
Thermus Aquaticus. Implications For The Synthesis Of
Large Cyclic Glucans
Length = 500
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 85 EVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHV-----------IDLDILQGYQ 133
+VL + Y PY F+ F N + + ER +V +D +L ++
Sbjct: 45 QVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWK 104
Query: 134 WPAFMQAL 141
WPA +A
Sbjct: 105 WPALKEAF 112
>pdb|2OWC|A Chain A, Structure Of A Covalent Intermediate In Thermus
Thermophilus Amylomaltase
pdb|2OWW|A Chain A, Covalent Intermediate In Amylomaltase In Complex With The
Acceptor Analog 4-Deoxyglucose
pdb|2OWX|A Chain A, Thermus Thermophilus Amylomaltase At Ph 5.6
Length = 502
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 85 EVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHV-----------IDLDILQGYQ 133
+VL + Y PY F+ F N + + ER +V +D +L ++
Sbjct: 48 QVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWK 107
Query: 134 WPAFMQAL 141
WPA +A
Sbjct: 108 WPALKEAF 115
>pdb|1FP8|A Chain A, Structure Of The Amylomaltase From Thermus Thermophilus
Hb8 In Space Group P21212
pdb|1FP9|A Chain A, Structure Of Amylomaltase From Thermus Thermophilus Hb8 In
Space Group C2
Length = 500
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 85 EVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHV-----------IDLDILQGYQ 133
+VL + Y PY F+ F N + + ER +V +D +L ++
Sbjct: 45 QVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWK 104
Query: 134 WPAFMQAL 141
WPA +A
Sbjct: 105 WPALKEAF 112
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 19/136 (13%)
Query: 244 ASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRN-IVACEGGE 302
S+ P +E L + FD L ++ K+E Y+ A E N VA E +
Sbjct: 582 VSNGNPLVTIEDIEKLESGAITFDDL--------VRQGKIE-YLDAEEEENAYVALEPND 632
Query: 303 RTARHERLEKWRKIMEGKGFRGVPL-----SANAVTQS---KILLGLYSCDGYRLTEDNG 354
T H LE W + G +P S QS K LGLY+ + Y+L D
Sbjct: 633 LTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAAN-YQLRTDTR 691
Query: 355 CLLLGWQDRALLAASA 370
LL + R L+ A
Sbjct: 692 AHLLHYPQRPLVQTRA 707
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 153 ITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKP 195
+TG+ T G + +A +P + VGE++EDL+P
Sbjct: 440 LTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRP 482
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,089,517
Number of Sequences: 62578
Number of extensions: 384435
Number of successful extensions: 1186
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 20
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)