Query 045762
Match_columns 373
No_of_seqs 120 out of 679
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 7E-116 2E-120 874.1 39.4 363 8-372 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 98.0 0.00045 9.8E-09 65.4 17.8 193 94-326 33-227 (247)
3 TIGR00740 methyltransferase, p 97.3 0.0099 2.1E-07 55.7 15.2 108 119-242 53-162 (239)
4 TIGR02716 C20_methyl_CrtF C-20 97.0 0.015 3.2E-07 56.7 13.4 117 108-245 138-258 (306)
5 PRK06202 hypothetical protein; 96.8 0.024 5.2E-07 52.9 13.1 144 83-242 24-167 (232)
6 TIGR02752 MenG_heptapren 2-hep 96.6 0.4 8.8E-06 44.3 19.4 179 109-327 35-216 (231)
7 PLN02233 ubiquinone biosynthes 96.2 1 2.2E-05 43.0 20.3 133 107-256 61-195 (261)
8 TIGR03438 probable methyltrans 95.5 0.15 3.3E-06 49.7 11.3 120 111-243 57-178 (301)
9 PF13649 Methyltransf_25: Meth 95.3 0.05 1.1E-06 43.8 6.2 97 123-234 1-99 (101)
10 COG2226 UbiE Methylase involve 95.3 1.5 3.2E-05 41.8 16.7 190 96-326 27-221 (238)
11 PF01209 Ubie_methyltran: ubiE 95.2 0.068 1.5E-06 50.5 7.5 180 110-329 38-220 (233)
12 TIGR01934 MenG_MenH_UbiE ubiqu 95.1 2.5 5.4E-05 38.2 18.4 120 105-244 25-146 (223)
13 smart00138 MeTrc Methyltransfe 95.1 0.039 8.4E-07 53.0 5.6 128 117-246 97-247 (264)
14 PF13489 Methyltransf_23: Meth 94.9 0.25 5.5E-06 42.2 9.8 98 117-245 20-119 (161)
15 PLN02585 magnesium protoporphy 94.7 0.89 1.9E-05 45.0 14.3 104 119-241 144-249 (315)
16 PLN02336 phosphoethanolamine N 94.6 2.6 5.7E-05 43.6 18.2 114 107-241 254-368 (475)
17 PF12847 Methyltransf_18: Meth 94.6 0.15 3.2E-06 41.2 7.1 105 122-241 4-110 (112)
18 PF13847 Methyltransf_31: Meth 94.3 0.19 4.1E-06 43.5 7.6 108 118-243 2-112 (152)
19 PLN02336 phosphoethanolamine N 94.1 0.75 1.6E-05 47.6 12.7 113 109-240 27-140 (475)
20 PRK11207 tellurite resistance 94.0 0.73 1.6E-05 42.0 11.1 111 108-239 19-131 (197)
21 PRK08317 hypothetical protein; 94.0 4.2 9.1E-05 36.9 16.3 114 111-243 11-126 (241)
22 PRK00216 ubiE ubiquinone/menaq 93.8 5.3 0.00011 36.5 17.0 115 111-242 43-159 (239)
23 TIGR03587 Pse_Me-ase pseudamin 93.7 0.58 1.3E-05 43.1 10.0 100 122-244 46-145 (204)
24 TIGR00477 tehB tellurite resis 93.5 0.73 1.6E-05 42.0 10.2 111 106-237 17-128 (195)
25 PTZ00098 phosphoethanolamine N 93.3 2.2 4.8E-05 40.8 13.6 115 106-240 39-154 (263)
26 PRK05785 hypothetical protein; 93.2 2.4 5.2E-05 39.6 13.4 94 120-242 52-146 (226)
27 PF08241 Methyltransf_11: Meth 93.1 0.18 3.8E-06 39.0 4.8 93 124-239 1-94 (95)
28 PLN02396 hexaprenyldihydroxybe 93.1 2 4.3E-05 42.6 13.2 100 120-241 132-234 (322)
29 PRK12335 tellurite resistance 93.0 0.72 1.6E-05 44.6 9.9 108 109-237 110-218 (287)
30 PF09243 Rsm22: Mitochondrial 92.9 0.5 1.1E-05 45.7 8.5 138 103-259 13-156 (274)
31 PRK14103 trans-aconitate 2-met 92.5 0.99 2.1E-05 42.6 9.9 106 110-242 20-126 (255)
32 TIGR02021 BchM-ChlM magnesium 92.5 1.2 2.5E-05 41.1 10.1 116 102-240 36-156 (219)
33 TIGR03439 methyl_EasF probable 92.0 1.8 4E-05 42.8 11.3 150 110-268 69-234 (319)
34 TIGR02072 BioC biotin biosynth 91.7 3.3 7.2E-05 37.7 12.2 111 108-241 20-134 (240)
35 PRK01683 trans-aconitate 2-met 90.5 2.5 5.3E-05 39.8 10.2 111 107-242 19-130 (258)
36 PF08242 Methyltransf_12: Meth 89.7 0.22 4.8E-06 39.6 2.0 96 124-237 1-98 (99)
37 COG4106 Tam Trans-aconitate me 89.4 1.3 2.9E-05 41.6 7.1 111 115-249 26-136 (257)
38 PRK11036 putative S-adenosyl-L 89.3 3.1 6.7E-05 39.3 9.9 112 109-240 35-147 (255)
39 PF00891 Methyltransf_2: O-met 89.2 2.7 5.9E-05 39.2 9.3 112 109-247 90-205 (241)
40 PF03291 Pox_MCEL: mRNA cappin 88.7 2.2 4.8E-05 42.5 8.7 117 119-244 62-189 (331)
41 TIGR02081 metW methionine bios 88.3 7.2 0.00016 35.1 11.2 47 110-166 6-52 (194)
42 COG2230 Cfa Cyclopropane fatty 88.1 5.1 0.00011 39.1 10.5 113 105-237 58-171 (283)
43 PLN02244 tocopherol O-methyltr 87.7 10 0.00022 37.6 12.9 102 119-241 118-223 (340)
44 PRK11705 cyclopropane fatty ac 87.6 4.7 0.0001 40.9 10.5 108 109-240 157-265 (383)
45 PF03848 TehB: Tellurite resis 85.6 9.5 0.00021 35.1 10.3 111 109-240 20-131 (192)
46 PRK00107 gidB 16S rRNA methylt 85.4 25 0.00053 32.0 13.0 98 120-242 46-145 (187)
47 PF02353 CMAS: Mycolic acid cy 85.3 5.3 0.00011 38.6 9.0 113 109-241 52-165 (273)
48 PRK10258 biotin biosynthesis p 84.9 28 0.00061 32.5 13.6 108 105-240 28-138 (251)
49 PRK07580 Mg-protoporphyrin IX 84.3 5.7 0.00012 36.4 8.5 99 119-240 63-163 (230)
50 PRK09489 rsmC 16S ribosomal RN 84.1 22 0.00048 35.5 13.1 115 108-242 185-303 (342)
51 PRK11873 arsM arsenite S-adeno 82.8 12 0.00026 35.5 10.3 100 121-240 79-181 (272)
52 PRK06922 hypothetical protein; 82.4 9.6 0.00021 41.4 10.2 106 121-242 420-538 (677)
53 smart00650 rADc Ribosomal RNA 82.3 8.1 0.00018 34.0 8.4 112 109-243 3-114 (169)
54 smart00828 PKS_MT Methyltransf 81.6 10 0.00023 34.6 9.1 100 122-240 2-102 (224)
55 PRK15001 SAM-dependent 23S rib 81.4 19 0.00041 36.6 11.5 121 109-242 218-340 (378)
56 TIGR00138 gidB 16S rRNA methyl 81.4 16 0.00036 32.8 10.1 96 121-241 44-141 (181)
57 TIGR00452 methyltransferase, p 81.1 18 0.00038 35.8 11.0 113 109-241 111-224 (314)
58 PRK10909 rsmD 16S rRNA m(2)G96 80.5 26 0.00056 32.2 11.2 106 121-247 55-164 (199)
59 PRK05134 bifunctional 3-demeth 79.2 52 0.0011 30.2 14.4 103 118-241 47-150 (233)
60 TIGR00537 hemK_rel_arch HemK-r 78.7 46 0.001 29.3 12.8 50 122-184 22-71 (179)
61 PRK13255 thiopurine S-methyltr 78.3 35 0.00075 31.7 11.5 112 120-251 38-168 (218)
62 PF13679 Methyltransf_32: Meth 78.0 5.2 0.00011 34.4 5.5 50 116-169 22-72 (141)
63 PRK00121 trmB tRNA (guanine-N( 77.3 14 0.00031 33.6 8.5 108 119-240 40-154 (202)
64 TIGR01983 UbiG ubiquinone bios 76.7 59 0.0013 29.5 13.5 101 119-240 45-147 (224)
65 PRK15068 tRNA mo(5)U34 methylt 73.7 96 0.0021 30.6 15.8 140 82-241 72-225 (322)
66 TIGR00417 speE spermidine synt 71.3 79 0.0017 30.2 12.3 110 118-241 72-185 (270)
67 COG2227 UbiG 2-polyprenyl-3-me 69.8 18 0.0004 34.4 7.3 100 119-240 59-159 (243)
68 PRK14968 putative methyltransf 68.6 69 0.0015 27.9 10.6 43 120-171 24-66 (188)
69 TIGR00091 tRNA (guanine-N(7)-) 68.6 21 0.00045 32.3 7.3 112 120-243 17-133 (194)
70 PRK13944 protein-L-isoaspartat 68.3 53 0.0011 29.9 10.0 106 110-239 63-170 (205)
71 cd02440 AdoMet_MTases S-adenos 66.5 50 0.0011 24.4 9.1 102 122-241 1-103 (107)
72 PRK13168 rumA 23S rRNA m(5)U19 65.8 74 0.0016 32.8 11.5 109 113-243 291-401 (443)
73 PRK00274 ksgA 16S ribosomal RN 65.6 22 0.00047 34.1 7.2 65 97-170 15-84 (272)
74 COG2242 CobL Precorrin-6B meth 65.5 13 0.00029 34.0 5.3 53 112-174 27-82 (187)
75 PRK00811 spermidine synthase; 64.4 83 0.0018 30.4 11.0 108 122-242 79-191 (283)
76 PRK11088 rrmA 23S rRNA methylt 64.3 37 0.00079 32.4 8.4 80 84-169 52-131 (272)
77 TIGR03840 TMPT_Se_Te thiopurin 63.9 68 0.0015 29.7 9.9 96 121-236 36-146 (213)
78 TIGR02085 meth_trns_rumB 23S r 62.9 94 0.002 31.3 11.5 98 122-242 236-334 (374)
79 PLN02490 MPBQ/MSBQ methyltrans 62.2 54 0.0012 32.8 9.4 100 119-240 113-213 (340)
80 TIGR03534 RF_mod_PrmC protein- 62.1 73 0.0016 29.3 9.9 54 120-184 88-142 (251)
81 TIGR02469 CbiT precorrin-6Y C5 60.7 29 0.00062 27.9 6.1 45 122-173 22-66 (124)
82 PLN02232 ubiquinone biosynthes 58.4 1.3E+02 0.0027 26.3 12.8 81 154-243 1-83 (160)
83 COG4301 Uncharacterized conser 57.7 1.1E+02 0.0025 29.6 10.1 215 105-332 59-311 (321)
84 PLN03075 nicotianamine synthas 55.2 1.6E+02 0.0035 29.0 11.1 107 122-242 126-233 (296)
85 PRK07402 precorrin-6B methylas 54.8 39 0.00084 30.4 6.5 117 102-242 23-142 (196)
86 PLN02446 (5-phosphoribosyl)-5- 54.7 16 0.00035 35.2 4.1 27 116-143 55-81 (262)
87 PF12147 Methyltransf_20: Puta 53.9 2.3E+02 0.0051 28.0 11.9 154 117-325 133-294 (311)
88 PRK03522 rumB 23S rRNA methylu 53.7 1.5E+02 0.0033 28.9 10.9 101 120-243 174-275 (315)
89 cd05298 GH4_GlvA_pagL_like Gly 52.8 91 0.002 32.3 9.5 60 135-194 14-73 (437)
90 PF05175 MTS: Methyltransferas 52.6 27 0.00059 30.8 5.0 114 107-239 19-137 (170)
91 PF05401 NodS: Nodulation prot 51.9 97 0.0021 28.8 8.5 111 110-242 33-146 (201)
92 COG1341 Predicted GTPase or GT 51.2 1E+02 0.0022 31.7 9.2 155 102-294 89-254 (398)
93 PRK10660 tilS tRNA(Ile)-lysidi 50.2 2.1E+02 0.0046 29.5 11.7 14 345-358 299-312 (436)
94 cd05197 GH4_glycoside_hydrolas 49.9 88 0.0019 32.3 8.8 56 134-189 12-68 (425)
95 PRK09328 N5-glutamine S-adenos 49.3 42 0.00091 31.5 6.0 48 117-171 106-153 (275)
96 TIGR00536 hemK_fam HemK family 48.7 45 0.00097 32.1 6.2 53 121-184 116-170 (284)
97 PF07521 RMMBL: RNA-metabolisi 47.5 43 0.00094 22.8 4.3 37 204-240 1-38 (43)
98 TIGR01626 ytfJ_HI0045 conserve 46.1 30 0.00065 31.6 4.2 107 120-232 60-182 (184)
99 PRK08287 cobalt-precorrin-6Y C 46.0 51 0.0011 29.3 5.7 47 120-173 32-78 (187)
100 PRK04148 hypothetical protein; 45.7 92 0.002 27.0 7.0 43 111-161 8-50 (134)
101 PRK14896 ksgA 16S ribosomal RN 45.2 86 0.0019 29.7 7.5 52 111-171 21-72 (258)
102 TIGR00563 rsmB ribosomal RNA s 45.1 3.6E+02 0.0077 27.6 12.5 68 106-184 225-292 (426)
103 KOG4300 Predicted methyltransf 44.9 2.6E+02 0.0056 26.6 10.1 119 118-257 75-196 (252)
104 PRK00517 prmA ribosomal protei 44.5 55 0.0012 30.8 6.0 65 98-171 97-163 (250)
105 COG2813 RsmC 16S RNA G1207 met 44.4 40 0.00087 33.2 5.0 58 107-171 146-203 (300)
106 PRK00050 16S rRNA m(4)C1402 me 43.8 37 0.00081 33.3 4.8 58 109-172 9-66 (296)
107 COG2890 HemK Methylase of poly 43.7 36 0.00078 33.0 4.6 44 122-172 113-156 (280)
108 PTZ00338 dimethyladenosine tra 42.8 91 0.002 30.4 7.3 54 110-172 27-80 (294)
109 TIGR00406 prmA ribosomal prote 42.8 72 0.0016 30.8 6.6 113 104-240 142-257 (288)
110 TIGR00755 ksgA dimethyladenosi 41.9 61 0.0013 30.5 5.9 53 109-170 19-71 (253)
111 PLN02366 spermidine synthase 41.6 2.8E+02 0.0061 27.3 10.6 108 122-242 94-206 (308)
112 KOG2904 Predicted methyltransf 41.2 41 0.00088 33.0 4.4 55 110-171 136-193 (328)
113 PRK03646 dadX alanine racemase 39.4 46 0.00099 33.3 4.8 53 119-175 117-177 (355)
114 PF02056 Glyco_hydro_4: Family 38.8 1E+02 0.0023 28.1 6.6 59 131-189 9-67 (183)
115 PF11455 DUF3018: Protein of 37.9 19 0.0004 27.4 1.3 21 308-328 3-23 (65)
116 PHA03411 putative methyltransf 37.0 60 0.0013 31.7 5.0 72 90-169 34-107 (279)
117 PRK10507 bifunctional glutathi 36.9 89 0.0019 33.9 6.7 87 126-217 353-444 (619)
118 TIGR02129 hisA_euk phosphoribo 36.6 35 0.00075 32.8 3.2 25 117-145 51-75 (253)
119 COG1093 SUI2 Translation initi 36.6 75 0.0016 30.7 5.4 39 147-185 219-261 (269)
120 PRK14121 tRNA (guanine-N(7)-)- 35.7 75 0.0016 32.5 5.6 118 111-243 114-236 (390)
121 TIGR03533 L3_gln_methyl protei 35.2 77 0.0017 30.6 5.5 45 120-171 122-166 (284)
122 PRK11727 23S rRNA mA1618 methy 34.5 1.1E+02 0.0024 30.4 6.4 48 117-171 112-159 (321)
123 cd05296 GH4_P_beta_glucosidase 34.4 3.2E+02 0.007 28.1 10.1 54 135-188 14-68 (419)
124 TIGR01716 RGG_Cterm transcript 34.3 80 0.0017 28.6 5.2 55 8-62 127-182 (220)
125 PRK14902 16S rRNA methyltransf 34.2 2.5E+02 0.0053 28.9 9.3 91 108-211 239-329 (444)
126 TIGR00080 pimt protein-L-isoas 33.9 98 0.0021 28.2 5.8 57 110-172 68-124 (215)
127 PF14044 NETI: NETI protein 32.3 35 0.00075 25.2 1.9 23 304-326 4-26 (57)
128 PF04716 ETC_C1_NDUFA5: ETC co 32.1 99 0.0022 22.7 4.3 37 260-299 9-45 (57)
129 KOG1165 Casein kinase (serine/ 31.8 26 0.00056 35.4 1.5 12 118-129 165-176 (449)
130 PRK00312 pcm protein-L-isoaspa 31.6 1.1E+02 0.0024 27.7 5.6 54 111-173 70-123 (212)
131 PRK14966 unknown domain/N5-glu 31.0 1.1E+02 0.0023 31.8 5.9 52 122-184 254-305 (423)
132 COG0357 GidB Predicted S-adeno 30.8 1.7E+02 0.0036 27.5 6.7 62 120-194 68-130 (215)
133 TIGR00479 rumA 23S rRNA (uraci 29.9 4.9E+02 0.011 26.4 10.6 98 121-240 294-394 (431)
134 PRK13942 protein-L-isoaspartat 29.7 1.1E+02 0.0024 28.0 5.3 56 111-172 68-123 (212)
135 KOG3178 Hydroxyindole-O-methyl 29.7 57 0.0012 32.7 3.6 42 202-245 236-279 (342)
136 PRK11805 N5-glutamine S-adenos 28.3 1.2E+02 0.0025 29.8 5.5 44 121-171 135-178 (307)
137 PHA03412 putative methyltransf 28.2 77 0.0017 30.2 4.0 46 120-169 50-95 (241)
138 PF13659 Methyltransf_26: Meth 27.6 1.4E+02 0.003 23.7 5.1 105 121-240 2-113 (117)
139 TIGR03183 DNA_S_dndC putative 27.2 2E+02 0.0044 30.0 7.2 79 109-187 3-91 (447)
140 cd06815 PLPDE_III_AR_like_1 Ty 27.1 2.6E+02 0.0056 27.8 7.8 33 120-156 118-155 (353)
141 PRK00377 cbiT cobalt-precorrin 26.7 2E+02 0.0043 25.8 6.4 48 119-172 40-87 (198)
142 PF03808 Glyco_tran_WecB: Glyc 26.1 3.4E+02 0.0073 24.0 7.7 21 220-240 88-108 (172)
143 TIGR00044 pyridoxal phosphate 25.7 1.3E+02 0.0029 27.9 5.2 57 120-177 122-188 (229)
144 PRK04020 rps2P 30S ribosomal p 25.4 53 0.0011 30.6 2.3 125 101-247 21-151 (204)
145 KOG1975 mRNA cap methyltransfe 23.7 3.8E+02 0.0083 27.1 8.0 138 95-245 92-241 (389)
146 cd01715 ETF_alpha The electron 23.6 2.9E+02 0.0063 24.1 6.7 96 161-260 11-107 (168)
147 PTZ00146 fibrillarin; Provisio 23.4 7.2E+02 0.016 24.4 12.9 122 121-264 134-261 (293)
148 PRK14967 putative methyltransf 23.4 2E+02 0.0043 26.3 5.8 44 120-171 37-80 (223)
149 COG1500 Predicted exosome subu 23.2 2.8E+02 0.006 26.4 6.6 79 261-342 72-153 (234)
150 PRK06850 hypothetical protein; 22.8 3E+02 0.0065 29.2 7.5 76 112-187 27-112 (507)
151 PRK13587 1-(5-phosphoribosyl)- 22.4 1.2E+02 0.0027 28.4 4.3 33 114-146 42-76 (234)
152 cd01822 Lysophospholipase_L1_l 22.2 4.8E+02 0.01 22.0 10.7 19 222-240 90-108 (177)
153 PRK03987 translation initiatio 22.0 1.8E+02 0.004 28.0 5.4 39 147-185 217-259 (262)
154 PRK03612 spermidine synthase; 21.9 6.9E+02 0.015 26.4 10.2 109 122-243 300-416 (521)
155 KOG1270 Methyltransferases [Co 21.8 2.2E+02 0.0048 27.8 5.8 93 123-235 93-188 (282)
156 PF07088 GvpD: GvpD gas vesicl 21.4 2.3E+02 0.0049 29.5 6.0 50 117-185 105-154 (484)
157 PF01168 Ala_racemase_N: Alani 21.4 1.5E+02 0.0032 26.8 4.5 37 118-158 110-151 (218)
158 cd00956 Transaldolase_FSA Tran 21.2 1.6E+02 0.0034 27.3 4.6 65 95-175 14-78 (211)
159 PF06711 DUF1198: Protein of u 21.1 68 0.0015 28.1 2.0 34 308-342 89-122 (148)
160 PF03492 Methyltransf_7: SAM d 20.8 1.7E+02 0.0037 29.1 5.1 60 116-175 13-81 (334)
161 cd06819 PLPDE_III_LS_D-TA Type 20.8 1.3E+02 0.0028 29.7 4.3 33 120-156 127-165 (358)
162 TIGR03504 FimV_Cterm FimV C-te 20.8 1.3E+02 0.0028 20.9 3.0 27 17-47 8-34 (44)
163 PF00367 PTS_EIIB: phosphotran 20.8 2E+02 0.0043 18.9 3.7 20 109-128 2-21 (35)
164 TIGR03704 PrmC_rel_meth putati 20.7 1.9E+02 0.0041 27.3 5.2 46 120-172 87-132 (251)
165 PF02527 GidB: rRNA small subu 20.5 2.4E+02 0.0051 25.6 5.5 59 122-192 51-109 (184)
166 PF01135 PCMT: Protein-L-isoas 20.3 2.8E+02 0.006 25.6 6.1 61 110-176 63-123 (209)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=7.1e-116 Score=874.15 Aligned_cols=363 Identities=57% Similarity=0.918 Sum_probs=344.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHHHhHhccCCCCCCCCCCCCCCCCCCCHHHHH
Q 045762 8 LVHLLLACAEAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAATLTTKPSTSTPTPFSPFPPNSLEVL 87 (373)
Q Consensus 8 l~~lL~~cA~Ai~~~~~~~A~~lL~~l~~~~s~~g~~~qRla~yF~~AL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
|++||++||+||+.||.+.|+.+|++|++++||.|||+||+|+||++||.+|+.+. +++.|++.+....+ +.+..+..
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~-~~~~~~~~~~~~~~-~~~~~~~~ 78 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGS-GPGLYSALPPSSPS-PSESSEQL 78 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhcc-CcccccCCCCcccc-ccchHHHH
Confidence 68999999999999999999999999999999999999999999999999999996 67776644322111 12245889
Q ss_pred HHHHHHHhhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecC----ChhHH
Q 045762 88 KIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGA----TIESA 163 (373)
Q Consensus 88 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~----~~~~l 163 (373)
.+|+.||+.|||+||||||||||||||++|+++||||||||++|.|||+|||+||+|++|||+||||||++ +.+.+
T Consensus 79 ~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l 158 (374)
T PF03514_consen 79 AAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADEL 158 (374)
T ss_pred HHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred HHHHHHHHHHHhhcCCCeEEEe-cCCCccCcCcccccccCCceEEEeeccccCCCCCC------cHHHHHHHHHhcCCcE
Q 045762 164 KETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSN------CLGNLLAMIRDQAPNI 236 (373)
Q Consensus 164 ~~tg~rL~~fA~~lgv~fef~~-v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~------~~~~~L~~ir~L~P~v 236 (373)
++||+||.+||+++||||||++ +..+++++++++|++++||+|||||+|+|||+.++ .++.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 9999999999999999999999 68999999999999999999999999999999843 3789999999999999
Q ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHH
Q 045762 237 VTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKI 316 (373)
Q Consensus 237 v~~~E~ea~~n~~~F~~RF~eaL~~Y~alfdsLea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r 316 (373)
||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccccCChHHHHHHHHHHhccCCCCcEEEeeCCEEEEEECCceeEEEeeec
Q 045762 317 MEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLTEDNGCLLLGWQDRALLAASAWR 372 (373)
Q Consensus 317 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~g~l~L~Wk~~~L~~~SaW~ 372 (373)
|.+|||+++|+|++++.|||+||++|+++||+|++++|||+||||++||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999999878999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.02 E-value=0.00045 Score=65.42 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=110.0
Q ss_pred HhhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHH
Q 045762 94 YQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTEL 173 (373)
Q Consensus 94 ~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~f 173 (373)
....|.+...|-.++..+-.-+. +.-+|+|+|.|.|.--.. |+.+- ..|..++|||+.+...++.+.+++.++
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~----l~~~~-~~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLS----VRRNI-HHDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHH----HHHhc-CCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 45688888888877754433332 234799999999973333 33321 125689999999999888888877553
Q ss_pred HhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCc-EEEEEeecCCCCCCch
Q 045762 174 AHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPN-IVTIVEQEASHNGPYF 251 (373)
Q Consensus 174 A~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~-vv~~~E~ea~~n~~~F 251 (373)
.. .-..+|. ..++.++.. ...+.++ +.+.+|++.++....+++.+ +.|+|. +++++|.=.. ..+..
T Consensus 106 ~~--~~~v~~~--~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~-~~~~~ 173 (247)
T PRK15451 106 KA--PTPVDVI--EGDIRDIAI-----ENASMVV--LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF-EDAKV 173 (247)
T ss_pred CC--CCCeEEE--eCChhhCCC-----CCCCEEe--hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC-Ccchh
Confidence 21 1134443 233333322 2234443 45668998766667777776 668998 5666675333 22333
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHHHhcCCCcccc
Q 045762 252 LGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVP 326 (373)
Q Consensus 252 ~~RF~eaL~~Y~alfdsLea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r~~~aGF~~~~ 326 (373)
-+.+.+..+.|. .. .+-... .+++ .....+|+ -+.++.++..++|+.|||..+-
T Consensus 174 ~~~~~~~~~~~~------~~-~g~s~~---ei~~--~~~~~~~~---------~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 174 GELLFNMHHDFK------RA-NGYSEL---EISQ--KRSMLENV---------MLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHHHHH------HH-cCCCHH---HHHH--HHHHHHhh---------cccCCHHHHHHHHHHcCchhHH
Confidence 333333322221 11 111111 1222 01123332 2446788999999999998644
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.30 E-value=0.0099 Score=55.74 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=67.7
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l 198 (373)
+.-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+...++.+.+++.++-. +.+.+|. ..++.++..
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~~~~--- 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CNDIRHVEI--- 120 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--ECChhhCCC---
Confidence 34579999999995 4555554422 2578999999998888888877755321 2234443 233333322
Q ss_pred cccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE-ee
Q 045762 199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV-EQ 242 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~-E~ 242 (373)
.+.+. |-+.+.||++.++....+|+.+ +.|+|.-.+++ |.
T Consensus 121 --~~~d~--v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 --KNASM--VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred --CCCCE--EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 22233 4456668998755566777776 66899955554 53
No 4
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.97 E-value=0.015 Score=56.73 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=70.2
Q ss_pred hHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC--eEEEe
Q 045762 108 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP--FEFHP 185 (373)
Q Consensus 108 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~--fef~~ 185 (373)
.+.|++.+.-.+.-+|+|+|.|.|. +...++++. |.+++|+++.+ ..++.+.++ ++..|+. .+|..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-~~~~~a~~~----~~~~gl~~rv~~~~ 205 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-GAIDLVNEN----AAEKGVADRMRGIA 205 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-HHHHHHHHH----HHhCCccceEEEEe
Confidence 5667777765666799999999984 445555543 67899999863 445554443 4445553 34433
Q ss_pred cCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCc-EEEEEeecCC
Q 045762 186 VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPN-IVTIVEQEAS 245 (373)
Q Consensus 186 v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~-vv~~~E~ea~ 245 (373)
.+..+.+ ....+.+.++ ..||+..++....+|+.+ +.|+|. .++++|.-.+
T Consensus 206 --~d~~~~~-----~~~~D~v~~~--~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 206 --VDIYKES-----YPEADAVLFC--RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred --cCccCCC-----CCCCCEEEeE--hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 2222111 1123444333 356877666566778766 679996 5666676443
No 5
>PRK06202 hypothetical protein; Provisional
Probab=96.83 E-value=0.024 Score=52.88 Aligned_cols=144 Identities=15% Similarity=0.047 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhH
Q 045762 83 SLEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIES 162 (373)
Q Consensus 83 ~~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~ 162 (373)
+.+..+.|+.+-.+.++..--+-+-.+.+...+...+...|+|+|.|.|. +...|...... ..|..+||||+.+.+.
T Consensus 24 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~ 100 (232)
T PRK06202 24 PARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRA 100 (232)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHH
Confidence 33555555554444444332223333444333444456789999999996 33322222211 2356799999999887
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEee
Q 045762 163 AKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQ 242 (373)
Q Consensus 163 l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ 242 (373)
++.+.++.. ..++.+..... +++. ..++..=+|-|.+.|||+.++....+|+.+.++.-..+++.+-
T Consensus 101 l~~a~~~~~----~~~~~~~~~~~----~~l~-----~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl 167 (232)
T PRK06202 101 VAFARANPR----RPGVTFRQAVS----DELV-----AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHNDL 167 (232)
T ss_pred HHHHHhccc----cCCCeEEEEec----cccc-----ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEecc
Confidence 776655431 23455443221 1111 1223233344455689998765677888886655455555443
No 6
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.59 E-value=0.4 Score=44.28 Aligned_cols=179 Identities=13% Similarity=0.164 Sum_probs=91.0
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVG 187 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~ 187 (373)
+.++..+.-.+.-+|+|+|.|.|.- ...|+.+. +|..++|||+.+...++.+.+++.+ .+++ .+| +.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~----~~~la~~~--~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~--~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADW----SIALAEAV--GPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVEL--VH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHH----HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEE--EE
Confidence 4566666544446899999998872 33444431 2466899999988877777766543 2332 233 22
Q ss_pred CCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHH
Q 045762 188 EQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIF 266 (373)
Q Consensus 188 ~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~vv~~~E~ea~~n~~~F~~RF~eaL~~Y~alf 266 (373)
.+.+++.. ....=+.|+. .+.+|++.+ ...+|+. .+.|+|...+++-.....+.+ -+...+.+|...+
T Consensus 103 ~d~~~~~~---~~~~fD~V~~--~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~ 171 (231)
T TIGR02752 103 GNAMELPF---DDNSFDYVTI--GFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYFKYI 171 (231)
T ss_pred echhcCCC---CCCCccEEEE--ecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHHcCh
Confidence 23333221 1111134443 355677643 3456654 577999855554322222322 2333333332211
Q ss_pred hh-hhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHHHhcCCCccccC
Q 045762 267 DS-LDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPL 327 (373)
Q Consensus 267 ds-Lea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r~~~aGF~~~~l 327 (373)
-. +...+..... +...+...+.+ --+.++++..|+.+||..+.+
T Consensus 172 ~p~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 172 MPLFGKLFAKSYK-----EYSWLQESTRD------------FPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred hHHhhHHhcCCHH-----HHHHHHHHHHH------------cCCHHHHHHHHHHcCCCeeEE
Confidence 11 1111211111 11112222222 235678999999999987654
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.22 E-value=1 Score=42.99 Aligned_cols=133 Identities=17% Similarity=0.049 Sum_probs=76.1
Q ss_pred hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEec
Q 045762 107 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPV 186 (373)
Q Consensus 107 aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v 186 (373)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ |.-++|||+.+.+.++.+.++....+....-..+|..
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~~--~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~- 133 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKVG--SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE- 133 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE-
Confidence 34444444443445689999999997 3345555432 4458999999999888887765433332222344432
Q ss_pred CCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcE-EEEEeecCCCCCCchHHHHH
Q 045762 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNI-VTIVEQEASHNGPYFLGRFL 256 (373)
Q Consensus 187 ~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~v-v~~~E~ea~~n~~~F~~RF~ 256 (373)
.+.+++. ..++..=+|-+.+.||++.+ ...+|+.+ |-|+|.- ++++|-.. ....|...+.
T Consensus 134 -~d~~~lp-----~~~~sfD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~~ 195 (261)
T PLN02233 134 -GDATDLP-----FDDCYFDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSMQ 195 (261)
T ss_pred -cccccCC-----CCCCCEeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHHH
Confidence 2333332 33333334556677898853 45566655 7799984 45555532 2334555443
No 8
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.48 E-value=0.15 Score=49.72 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=77.7
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCc
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQL 190 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~ 190 (373)
|.+.+. +...|||+|.|.|.-=..|++++.. ..++|+|+-+.+.|+.+.++|.+- .-+++++ .+..+.
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~--~i~gD~ 124 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAAD--YPQLEVH--GICADF 124 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHhh--CCCceEE--EEEEcc
Confidence 444443 2357999999999876677777742 478999999999999999988642 1234433 333333
Q ss_pred cCcCccccc-ccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEeec
Q 045762 191 EDLKPHMFN-RRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQE 243 (373)
Q Consensus 191 e~l~~~~l~-~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~e 243 (373)
.+... ... ...+..+++.+...+|++..+....+|+.+ +.|+|.-..++.-|
T Consensus 125 ~~~~~-~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 125 TQPLA-LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cchhh-hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 22110 000 112356677766778888766678889988 56999866665443
No 9
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.34 E-value=0.05 Score=43.80 Aligned_cols=97 Identities=25% Similarity=0.275 Sum_probs=58.6
Q ss_pred EEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccC
Q 045762 123 VIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRV 202 (373)
Q Consensus 123 IIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~ 202 (373)
|+|+|.|.|..=..|.+.+ . .| |..++|||+.+++.+..+.++..+ .+++.+|.. .++.++. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~--~~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~~--~D~~~l~-----~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D--AG-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRFVQ--ADARDLP-----FSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEEE--SCTTCHH-----HHS
T ss_pred CEEeecCCcHHHHHHHHHh-h--hc-ccceEEEEECCHHHHHHHHHhchh----cCCceEEEE--CCHhHCc-----ccC
Confidence 7999999998766666665 1 22 669999999999888777766555 445666643 3333332 223
Q ss_pred Cce-EEEeeccccCCCCCCcHHHHHHHHHh-cCC
Q 045762 203 GEA-LAVNAVNRLHRVPSNCLGNLLAMIRD-QAP 234 (373)
Q Consensus 203 ~Ea-laVn~~~~Lh~l~~~~~~~~L~~ir~-L~P 234 (373)
+.. ++|++...+||+.++.+..+|+.+.+ ++|
T Consensus 66 ~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred CCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCC
Confidence 333 44444555889877778888888744 444
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.27 E-value=1.5 Score=41.76 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=116.2
Q ss_pred hCCcchhh-HHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHH
Q 045762 96 ACPYVKFA-HFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELA 174 (373)
Q Consensus 96 ~~P~~~fa-~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA 174 (373)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+.|.|- | .-.+++.-+ .-+|||++.+..-|..+.+++.+.
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~---a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~- 98 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-M---ALLLAKSVG---TGEVVGLDISESMLEVAREKLKKK- 98 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-H---HHHHHHhcC---CceEEEEECCHHHHHHHHHHhhcc-
Confidence 45556665 45556666666654467899999999885 2 333444433 789999999999898888776553
Q ss_pred hhcCCC-eEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEeecCCCCCCchH
Q 045762 175 HSLHVP-FEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQEASHNGPYFL 252 (373)
Q Consensus 175 ~~lgv~-fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ea~~n~~~F~ 252 (373)
|+. ++| |..+.++| ...+.-.=+|.+.|.||++.+ .+.+|+-+ |=|+|...++|-.=.....+-
T Consensus 99 ---~~~~i~f--v~~dAe~L-----Pf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~-- 164 (238)
T COG2226 99 ---GVQNVEF--VVGDAENL-----PFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPV-- 164 (238)
T ss_pred ---CccceEE--EEechhhC-----CCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchh--
Confidence 222 333 33344443 345555557888899999974 66777766 559999866664433434333
Q ss_pred HHHHHHHH-HHHH-HHhhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHHHhcCCCcccc
Q 045762 253 GRFLEALH-YYSA-IFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVP 326 (373)
Q Consensus 253 ~RF~eaL~-~Y~a-lfdsLea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r~~~aGF~~~~ 326 (373)
|...++ ||.. ++=.+......+..+...+ .+-|. ++-..+.-.+.+..+||..+.
T Consensus 165 --~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL-----~eSi~------------~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 165 --LRKAYILYYFKYVLPLIGKLVAKDAEAYEYL-----AESIR------------RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred --hHHHHHHHHHHhHhhhhceeeecChHHHHHH-----HHHHH------------hCCCHHHHHHHHHhcCceEEe
Confidence 333333 4544 5555555444344444333 22343 333455667778889997665
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.20 E-value=0.068 Score=50.49 Aligned_cols=180 Identities=21% Similarity=0.236 Sum_probs=70.0
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQ 189 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~ 189 (373)
.+++.+...+--+|+|++.|.|.-+.. |+.+.+ |.-+|||++.+.+-|+.+.+++.+.... +.+|. ..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v--~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQ---NIEFV--QGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-HHHHHHHHHHHHHTT-----SEEEE--E-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEE--EcC
Confidence 445555566667999999999964443 344322 4569999999999999999888765533 33333 233
Q ss_pred ccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHH-HHHhcCCcE-EEEEeecCCCCCCchHHHHHHHHHHHHHHH-
Q 045762 190 LEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLA-MIRDQAPNI-VTIVEQEASHNGPYFLGRFLEALHYYSAIF- 266 (373)
Q Consensus 190 ~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~-~ir~L~P~v-v~~~E~ea~~n~~~F~~RF~eaL~~Y~alf- 266 (373)
.++ |...++..=+|-|.|.||++.+ ....|+ ..|-|+|.- ++++|-.--.| .++. ....+|...+
T Consensus 107 a~~-----lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~---~~~~~y~~~il 174 (233)
T PF01209_consen 107 AED-----LPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRN--PLLR---ALYKFYFKYIL 174 (233)
T ss_dssp TTB-------S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHH---HHHHH------
T ss_pred HHH-----hcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCC--chhh---ceeeeeecccc
Confidence 333 3345566777889999999975 344444 457799985 55566533222 2333 3333444422
Q ss_pred hhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhcCCcccccccchhHHHHHHhcCCCccccCCh
Q 045762 267 DSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGGERTARHERLEKWRKIMEGKGFRGVPLSA 329 (373)
Q Consensus 267 dsLea~~~~~~~~R~~iE~~~l~~eI~niVa~eG~~R~eRhe~~~~W~~r~~~aGF~~~~ls~ 329 (373)
=-+..-++.+ +.. -.+|.+-|.+.. +.++-.+.|+.+||+.+....
T Consensus 175 P~~g~l~~~~---~~~--Y~yL~~Si~~f~------------~~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 175 PLIGRLLSGD---REA--YRYLPESIRRFP------------SPEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccccccccc---ccc--cccccccccccc------------ccccccccccccccccccccc
Confidence 2222222222 111 224555555432 233456688999998776543
No 12
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.10 E-value=2.5 Score=38.24 Aligned_cols=120 Identities=19% Similarity=0.113 Sum_probs=67.9
Q ss_pred HHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 105 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 105 ~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
....+.+++.+.-.+.-.|+|+|.|.|. +...++.+- |+..++|+++.+...+..+.+++. .+-..+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~ 93 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFI 93 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHHHHHHHHHHhc-----cCCCceEE
Confidence 3344556666655567799999999886 333444332 334789999998877777766553 22233443
Q ss_pred ecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEE-EEeecC
Q 045762 185 PVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVT-IVEQEA 244 (373)
Q Consensus 185 ~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~-~~E~ea 244 (373)
. .+..++. ..++..=+|-+.+.+|++.+ ...+|+.+ +.|+|.-.+ ++|...
T Consensus 94 ~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 94 Q--ADAEALP-----FEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred e--cchhcCC-----CCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3 2222221 11222333344556777753 45566655 568888544 456543
No 13
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.09 E-value=0.039 Score=53.00 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=71.4
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCC--CCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC--------------
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPG--GAPFLRITGVGATIESAKETGRCLTELAHSLHVP-------------- 180 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~--gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-------------- 180 (373)
..+.++|.|.|.+.|--.-+|--.|++... ..+..+|||++.+...|+.+.+..-.-..--++|
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 345699999999999887777665655322 1347999999999988877765431111111222
Q ss_pred eEEEe-cCCC----ccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE-eecCCC
Q 045762 181 FEFHP-VGEQ----LEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV-EQEASH 246 (373)
Q Consensus 181 fef~~-v~~~----~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~-E~ea~~ 246 (373)
+.+.+ +... ..++.. .....+..=+|-|...||++.++....+++.+ +.|+|.-..++ ..|.-.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~~ 247 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESLP 247 (264)
T ss_pred EEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccCC
Confidence 11111 1000 011111 01112222233455567888765566777776 77999955555 455443
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=94.90 E-value=0.25 Score=42.25 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=58.1
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcc
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPH 196 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~ 196 (373)
..+.-.|+|+|.|.| . +.+.|+.+ |. ++||++.+...++. ..+.+.-.-..
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~~~~~~-----------~~~~~~~~~~~--------- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISPQMIEK-----------RNVVFDNFDAQ--------- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSHHHHHH-----------TTSEEEEEECH---------
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCHHHHhh-----------hhhhhhhhhhh---------
Confidence 355679999999999 3 45555554 22 99999998776655 22222211000
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEE-EEEeecCC
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIV-TIVEQEAS 245 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv-~~~E~ea~ 245 (373)
.....++-.=+|-|...|||+.+ ...+|+.+ +.|+|.-+ ++++...+
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhhccccchhhHhhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 11122334445555577899973 56777777 55899744 44455544
No 15
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.74 E-value=0.89 Score=44.96 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=64.8
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHh-hc-CCCeEEEecCCCccCcCcc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAH-SL-HVPFEFHPVGEQLEDLKPH 196 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~-~l-gv~fef~~v~~~~e~l~~~ 196 (373)
+.-.|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.++..+.-. .. +...+|.. .++++++.
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~--~Dl~~l~~- 211 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA--NDLESLSG- 211 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE--cchhhcCC-
Confidence 45689999999887 44555544 2 4899999999888887776543210 01 23344543 22333211
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEe
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVE 241 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E 241 (373)
.- + +|-|...|||+.++....+++.++.+.|..+++.-
T Consensus 212 ----~f-D--~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 212 ----KY-D--TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred ----Cc-C--EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe
Confidence 11 2 23355556788766677888888888888777743
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.63 E-value=2.6 Score=43.55 Aligned_cols=114 Identities=8% Similarity=0.052 Sum_probs=68.1
Q ss_pred hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEec
Q 045762 107 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPV 186 (373)
Q Consensus 107 aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v 186 (373)
....+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.+..+.++. ...+...+|...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~~ 321 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERA----IGRKCSVEFEVA 321 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHh----hcCCCceEEEEc
Confidence 34556666654445689999999995 3455666552 38999999887777666543 233444555432
Q ss_pred CCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 187 ~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
++.+.. ..++..=+|-|...++|+.+ ...+|+.+ +.|+|.-.+++.
T Consensus 322 --d~~~~~-----~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 322 --DCTKKT-----YPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred --CcccCC-----CCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEE
Confidence 222211 12222334445556788854 34556655 679999766554
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.58 E-value=0.15 Score=41.24 Aligned_cols=105 Identities=21% Similarity=0.184 Sum_probs=64.4
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRR 201 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~ 201 (373)
+|+|+|.|.|.- ...|+.+ -|..++|||+.+++.++.+.++..+.. .+-..+|.. .++ ....+. ..
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~--~d~-~~~~~~--~~ 69 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARL---FPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQ--GDA-EFDPDF--LE 69 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHH---HTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEE--SCC-HGGTTT--SS
T ss_pred EEEEEcCcCCHH----HHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEE--Ccc-ccCccc--CC
Confidence 689999999963 3344432 145689999999999988888884433 333445543 222 111100 11
Q ss_pred CCceEEEeeccccCCCCC-CcHHHHHHHH-HhcCCcEEEEEe
Q 045762 202 VGEALAVNAVNRLHRVPS-NCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~-~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
+=+.++.+. +.+|++.+ +....+|+.+ +.|+|.-.++++
T Consensus 70 ~~D~v~~~~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 70 PFDLVICSG-FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CEEEEEECS-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECC-CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 224555555 55666653 4567788876 579999777765
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.31 E-value=0.19 Score=43.54 Aligned_cols=108 Identities=24% Similarity=0.321 Sum_probs=63.6
Q ss_pred CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcCcc
Q 045762 118 EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLKPH 196 (373)
Q Consensus 118 ~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~~~ 196 (373)
.+..+|+|+|.|.|.. ...|+.+. .|..++|||+.+.+.++.+.. .++..+++ .+|.. .++++++..
T Consensus 2 ~~~~~iLDlGcG~G~~----~~~l~~~~--~~~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~d~~~l~~~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRL----LIQLAKEL--NPGAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--GDIEDLPQE 69 (152)
T ss_dssp TTTSEEEEET-TTSHH----HHHHHHHS--TTTSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--SBTTCGCGC
T ss_pred CCCCEEEEecCcCcHH----HHHHHHhc--CCCCEEEEEECcHHHHHHhhc----ccccccccccceEE--eehhccccc
Confidence 3567999999999964 34444321 235569999998887776665 56667776 55554 445554432
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcEEEEE-eec
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNIVTIV-EQE 243 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~vv~~~-E~e 243 (373)
+. ..=+.+..+ ..+|++.+ ...+|+. .+.|+|...+++ +..
T Consensus 70 -~~-~~~D~I~~~--~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 -LE-EKFDIIISN--GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -SS-TTEEEEEEE--STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -cC-CCeeEEEEc--CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 22 222344444 44577753 2355555 577998866555 444
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.07 E-value=0.75 Score=47.57 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=64.6
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..|++.+...+.-+|+|+|.|.|.- ...|+.+. -++|||+.+...++...+ + . ...-..+|.. .
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~----~~~la~~~-----~~v~giD~s~~~l~~a~~-~---~-~~~~~i~~~~--~ 90 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRF----TGELAKKA-----GQVIALDFIESVIKKNES-I---N-GHYKNVKFMC--A 90 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHH----HHHHHhhC-----CEEEEEeCCHHHHHHHHH-H---h-ccCCceEEEE--e
Confidence 4566666554445899999999954 34455442 178999988877754322 1 1 1111233332 1
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCcEEEEE
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPNIVTIV 240 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~vv~~~ 240 (373)
+..+. .+...++..=+|-|.+.+||+.++.+..+|+.+++ |+|...++.
T Consensus 91 d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 91 DVTSP---DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred ccccc---ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 22111 11122233334445567899987667788877644 899976655
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.00 E-value=0.73 Score=42.02 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=65.1
Q ss_pred hHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEec
Q 045762 108 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPV 186 (373)
Q Consensus 108 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v 186 (373)
++.+++.+...+.-.|+|+|.|.|. +...||.+ | .++|||+.+.+.++.+.++. +..+++ .++..
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S~~~i~~a~~~~----~~~~~~~v~~~~- 84 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKNPMSIANLERIK----AAENLDNLHTAV- 84 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCCHHHHHHHHHHH----HHcCCCcceEEe-
Confidence 4455555554444689999999997 33445654 2 38999999887776665443 233443 33322
Q ss_pred CCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEE
Q 045762 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTI 239 (373)
Q Consensus 187 ~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~ 239 (373)
.++.+++. . ..=+.++.+ +.+|++.++.+..+++.+ +.|+|.-.++
T Consensus 85 -~d~~~~~~---~-~~fD~I~~~--~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 85 -VDLNNLTF---D-GEYDFILST--VVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred -cChhhCCc---C-CCcCEEEEe--cchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 23333321 1 112344443 346877766677777776 6699997643
No 21
>PRK08317 hypothetical protein; Provisional
Probab=93.95 E-value=4.2 Score=36.92 Aligned_cols=114 Identities=21% Similarity=0.192 Sum_probs=62.3
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCc
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQL 190 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~ 190 (373)
+++.+.-.+.-+|+|+|.|.|. | ...++.+. +|.-++||++.+...++.+.++. ...+...+|.. .++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~---~~~~a~~~--~~~~~v~~~d~~~~~~~~a~~~~----~~~~~~~~~~~--~d~ 78 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-D---ARELARRV--GPEGRVVGIDRSEAMLALAKERA----AGLGPNVEFVR--GDA 78 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-H---HHHHHHhc--CCCcEEEEEeCCHHHHHHHHHHh----hCCCCceEEEe--ccc
Confidence 5566665556789999999874 3 33444443 25569999999887776665551 11233344443 222
Q ss_pred cCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEE-EEeec
Q 045762 191 EDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVT-IVEQE 243 (373)
Q Consensus 191 e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~-~~E~e 243 (373)
+++. ..++..=.|.+...+||+.+ ...+++.+ +.|+|.-.+ ++|.+
T Consensus 79 ~~~~-----~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 79 DGLP-----FPDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCC-----CCCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence 2221 11222222334445677754 34455554 668999644 44543
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.78 E-value=5.3 Score=36.49 Aligned_cols=115 Identities=21% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCc
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQL 190 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~ 190 (373)
+++.+.-.+.-+|+|+|.|.|. +...++.+ +|+..++|+++.+...++.+.+++... .+.-+..|.. .++
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~--~d~ 112 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQ--GDA 112 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEe--ccc
Confidence 4444443445789999999986 23333332 234789999999887777776655321 1222344433 222
Q ss_pred cCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEE-EEee
Q 045762 191 EDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVT-IVEQ 242 (373)
Q Consensus 191 e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~-~~E~ 242 (373)
.++.. ....-+.|+ +.+.+|++.+ ...+|+.+ +.|+|.-.+ ++|.
T Consensus 113 ~~~~~---~~~~~D~I~--~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 113 EALPF---PDNSFDAVT--IAFGLRNVPD--IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCC---CCCCccEEE--EecccccCCC--HHHHHHHHHHhccCCcEEEEEEe
Confidence 22211 111123333 3455677653 45666665 668888544 4454
No 23
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.71 E-value=0.58 Score=43.13 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=62.1
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRR 201 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~ 201 (373)
.|+|+|.|.|..-..| +... |..++|||+.+.+.++.+.+++. ++.+ .. .++.+ + ..
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS~~~l~~A~~~~~------~~~~--~~--~d~~~--~----~~ 102 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEINEYAVEKAKAYLP------NINI--IQ--GSLFD--P----FK 102 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEECCHHHHHHHHhhCC------CCcE--EE--eeccC--C----CC
Confidence 5999999999644444 3331 24589999999888877765431 2222 21 11111 1 12
Q ss_pred CCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeecC
Q 045762 202 VGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEA 244 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ea 244 (373)
++..=+|-+...|||+.++.+..+++.+.+..-+.++++|...
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 2222223345557888766678888888887778899998754
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.53 E-value=0.73 Score=41.96 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=67.9
Q ss_pred HhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEe
Q 045762 106 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHP 185 (373)
Q Consensus 106 taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~ 185 (373)
++...|++++.-.+.-+|+|+|.|.|..-. .|+.+ + .++|||+.+...++.+.++ ++.-|++..+..
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~~l~~a~~~----~~~~~~~v~~~~ 83 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPASIASVLDM----KARENLPLRTDA 83 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHHHHHHHHHH----HHHhCCCceeEe
Confidence 456678888876556799999999997433 34443 2 4799999887766665543 344566644433
Q ss_pred cCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEE
Q 045762 186 VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIV 237 (373)
Q Consensus 186 v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv 237 (373)
. ++.... +. ..=+.++.+ +.+|++..+.+..+++.+ +.|+|.-.
T Consensus 84 ~--d~~~~~---~~-~~fD~I~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 84 Y--DINAAA---LN-EDYDFIFST--VVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred c--cchhcc---cc-CCCCEEEEe--cccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 2 222111 11 112344433 346888666677888876 66999965
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.27 E-value=2.2 Score=40.75 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=66.9
Q ss_pred HhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEe
Q 045762 106 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHP 185 (373)
Q Consensus 106 taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~ 185 (373)
-+.+.+++.+.-.+.-+|+|+|.|.|.-- ..|+.+. ..++|||+.+...++.+.++... .-..+|..
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~ 105 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEA 105 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEE
Confidence 44567777776566678999999998732 3344433 24899999988777776665432 11233432
Q ss_pred cCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 186 VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 186 v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
.++.+. ...++..=+|-+...++|+..+....+|+.+ +.|+|.-.+++
T Consensus 106 --~D~~~~-----~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 106 --NDILKK-----DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred --CCcccC-----CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 122211 1122212122233445777644567778776 66999955554
No 26
>PRK05785 hypothetical protein; Provisional
Probab=93.24 E-value=2.4 Score=39.64 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=55.3
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccc
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~ 199 (373)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+.+.+-++...++ .++ +..+.+++ .
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~~Ml~~a~~~---------~~~----~~~d~~~l-----p 105 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAENMLKMNLVA---------DDK----VVGSFEAL-----P 105 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCHHHHHHHHhc---------cce----EEechhhC-----C
Confidence 34799999999954 344454431 4899999988877765432 111 22233332 3
Q ss_pred ccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEee
Q 045762 200 RRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 200 ~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
..++..=+|-+.+.|||+.+ .+.+|+.+ |-|+|.+ .++|-
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~~-~ile~ 146 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQV-GFIAM 146 (226)
T ss_pred CCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCce-EEEEe
Confidence 33444444555667888753 45666666 5688954 34454
No 27
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.11 E-value=0.18 Score=38.97 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=55.1
Q ss_pred EecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccCC
Q 045762 124 IDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVG 203 (373)
Q Consensus 124 IDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~ 203 (373)
+|+|.|.|.....|.+. +..++|+++.+.+.++.+.+++. ..+++ |.. .+.++ +...++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~----~~~~~--~~~--~d~~~-----l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK----NEGVS--FRQ--GDAED-----LPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT----TSTEE--EEE--SBTTS-----SSS-TT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc----ccCch--hee--ehHHh-----Cccccc
Confidence 58888888765555443 46789999998887776665443 33333 221 22333 334455
Q ss_pred ceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEE
Q 045762 204 EALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTI 239 (373)
Q Consensus 204 EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~ 239 (373)
..=+|-+...+||+ +....+++.+ |-|+|.-..+
T Consensus 60 sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeec--cCHHHHHHHHHHHcCcCeEEe
Confidence 55466666777888 4456666665 6688886554
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.06 E-value=2 Score=42.61 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=60.1
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC--CeEEEecCCCccCcCccc
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV--PFEFHPVGEQLEDLKPHM 197 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv--~fef~~v~~~~e~l~~~~ 197 (373)
.-.|+|+|.|.|. +...|+. .+ .++|||+.+.+.++.+.++ ++..++ ..+|.. .+.+++..
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae~l~~-- 194 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTAEKLAD-- 194 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCHHHhhh--
Confidence 3479999999997 4556664 22 4899999988877666544 222222 333332 33344321
Q ss_pred ccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 198 FNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 198 l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
.++..=+|-|...|||+.+ ...+|+.+ +-|+|.-.+++.
T Consensus 195 ---~~~~FD~Vi~~~vLeHv~d--~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 195 ---EGRKFDAVLSLEVIEHVAN--PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred ---ccCCCCEEEEhhHHHhcCC--HHHHHHHHHHHcCCCcEEEEE
Confidence 1222223445557899875 35677776 458999766665
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.02 E-value=0.72 Score=44.60 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=64.0
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
+.+++++.--+.=+|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.++ |+..++++++...
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~ai~~~~~~----~~~~~l~v~~~~~-- 174 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQSLENLQEI----AEKENLNIRTGLY-- 174 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHH----HHHcCCceEEEEe--
Confidence 345555433222389999999997 33445553 2 5899999988777665543 4556776655432
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEE
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIV 237 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv 237 (373)
++.+.. +. ..=+.++.+. .||++.++.+..+++.+ +.|+|.-.
T Consensus 175 D~~~~~---~~-~~fD~I~~~~--vl~~l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 175 DINSAS---IQ-EEYDFILSTV--VLMFLNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred chhccc---cc-CCccEEEEcc--hhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 222211 10 1113444443 46888766677888776 67999865
No 30
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=92.94 E-value=0.5 Score=45.68 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=77.8
Q ss_pred hHHHhhHHHHhhhcc----CceeEEEecCCCCCC-ccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhc
Q 045762 103 AHFTANQAIFEAFEA----EERVHVIDLDILQGY-QWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSL 177 (373)
Q Consensus 103 a~~taNqaIleA~~g----~~~VHIIDf~i~~G~-QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~l 177 (373)
+++++-..||+.++. -+--+|+|||.|.|. =|.. .+.+ +-...+|.|+.+... .+.++.|.+-....
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~~~-~~l~~~l~~~~~~~ 84 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSPEM-LELAKRLLRAGPNN 84 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCHHH-HHHHHHHHhccccc
Confidence 566777777777753 345689999999885 2321 1111 124689999876654 45666665432221
Q ss_pred CCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEeecCCCCCCchHHHHH
Q 045762 178 HVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQEASHNGPYFLGRFL 256 (373)
Q Consensus 178 gv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ea~~n~~~F~~RF~ 256 (373)
. ...... .+..+...+.+.+-|+ +.+.|-.|.++.+..+++.+ ..++| ++|++|+. ...+...+.+.+
T Consensus 85 ~-~~~~~~------~~~~~~~~~~~~DLvi--~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpG-t~~Gf~~i~~aR 153 (274)
T PF09243_consen 85 R-NAEWRR------VLYRDFLPFPPDDLVI--ASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPG-TPAGFRRIAEAR 153 (274)
T ss_pred c-cchhhh------hhhcccccCCCCcEEE--EehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCC-ChHHHHHHHHHH
Confidence 1 001111 1111112223333333 33445566666688888888 55666 99999984 445556666677
Q ss_pred HHH
Q 045762 257 EAL 259 (373)
Q Consensus 257 eaL 259 (373)
+.|
T Consensus 154 ~~l 156 (274)
T PF09243_consen 154 DQL 156 (274)
T ss_pred HHH
Confidence 666
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.51 E-value=0.99 Score=42.65 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=63.3
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQ 189 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~ 189 (373)
.+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++||++.+...++.+. ..++.| .. .+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a~--------~~~~~~--~~--~d 80 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAAR--------ERGVDA--RT--GD 80 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHH--------hcCCcE--EE--cC
Confidence 46666655555789999999994 556677653 3468999999877665543 335443 22 23
Q ss_pred ccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcEEEEEee
Q 045762 190 LEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNIVTIVEQ 242 (373)
Q Consensus 190 ~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~vv~~~E~ 242 (373)
.+++.+. ..=+.|+.| ..+||+.+ ...+|+. .+.|+|.-.+++..
T Consensus 81 ~~~~~~~----~~fD~v~~~--~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 81 VRDWKPK----PDTDVVVSN--AALQWVPE--HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhCCCC----CCceEEEEe--hhhhhCCC--HHHHHHHHHHhCCCCcEEEEEc
Confidence 3333211 112344444 45688753 3455655 47799997666653
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=92.49 E-value=1.2 Score=41.07 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred hhHHHhhHHHHhhhc--cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC
Q 045762 102 FAHFTANQAIFEAFE--AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV 179 (373)
Q Consensus 102 fa~~taNqaIleA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv 179 (373)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ + .++|||+.+.+.+..+.+++.. .++
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~---~~v~gvD~s~~~i~~a~~~~~~----~~~ 102 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G---AIVKAVDISEQMVQMARNRAQG----RDV 102 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C---CEEEEEECCHHHHHHHHHHHHh----cCC
Confidence 445566677777776 2346799999999995 55566654 1 3899999988888777777643 232
Q ss_pred --CeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCcEEEEE
Q 045762 180 --PFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPNIVTIV 240 (373)
Q Consensus 180 --~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~vv~~~ 240 (373)
..+|.. .+++++. ..=+.+ -+...++|+..+....+++.+.+ ++|.+++..
T Consensus 103 ~~~i~~~~--~d~~~~~------~~fD~i--i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 103 AGNVEFEV--NDLLSLC------GEFDIV--VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCceEEEE--CChhhCC------CCcCEE--EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 344443 2333332 112333 23334577764456677777754 566655543
No 33
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.97 E-value=1.8 Score=42.85 Aligned_cols=150 Identities=11% Similarity=0.026 Sum_probs=93.8
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCC
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGE 188 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~ 188 (373)
.|...+. +...|||||.|.|..=..||++|... + ...+-.+|+-+.+.|+++.++|. .-..| +++.++..
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~--~~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~g 139 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-K--KSVDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-C--CCceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEe
Confidence 4444443 23479999999999999999999732 2 24678999999999999999997 11234 77777654
Q ss_pred CccCcCcccc-cccCCc-eEEEeeccccCCCCCCcHHHHHHHHHh--cCCcEEEEEeecCC---------CC-CCchHHH
Q 045762 189 QLEDLKPHMF-NRRVGE-ALAVNAVNRLHRVPSNCLGNLLAMIRD--QAPNIVTIVEQEAS---------HN-GPYFLGR 254 (373)
Q Consensus 189 ~~e~l~~~~l-~~~~~E-alaVn~~~~Lh~l~~~~~~~~L~~ir~--L~P~vv~~~E~ea~---------~n-~~~F~~R 254 (373)
+..+.-...- ....+. .++.-.-..+.++.++....||+.+++ |+|.-..++--|.. .| ......+
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~ 219 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRR 219 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHH
Confidence 4433211000 001222 333333346777776678899999987 89986555544432 22 2233344
Q ss_pred H-HHHHHHHHHHHhh
Q 045762 255 F-LEALHYYSAIFDS 268 (373)
Q Consensus 255 F-~eaL~~Y~alfds 268 (373)
| .+.|++--..++.
T Consensus 220 FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 220 FVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHHHhCc
Confidence 4 5666666666654
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.72 E-value=3.3 Score=37.72 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred hHHHHhhhcc---CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 108 NQAIFEAFEA---EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 108 NqaIleA~~g---~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
.+.+++.+.. .+..+|+|+|.|.|.- ...|+.+ + |..++|+++.+...++.+.+++.. + .+|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~-~~~~~~~~D~~~~~~~~~~~~~~~-----~--~~~- 84 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F-PQAEFIALDISAGMLAQAKTKLSE-----N--VQF- 84 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C-CCCcEEEEeChHHHHHHHHHhcCC-----C--CeE-
Confidence 3334444442 2346899999999963 3334433 1 466799999888777666655431 2 222
Q ss_pred ecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 185 PVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 185 ~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
+..++++.... -..-+.++ +...+|++.+ ...+|+.+ +.|+|.-.++..
T Consensus 85 -~~~d~~~~~~~---~~~fD~vi--~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 85 -ICGDAEKLPLE---DSSFDLIV--SNLALQWCDD--LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -EecchhhCCCC---CCceeEEE--EhhhhhhccC--HHHHHHHHHHHcCCCcEEEEE
Confidence 22333333211 01123433 3445677743 45667766 568998666654
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=90.45 E-value=2.5 Score=39.82 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=65.9
Q ss_pred hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEec
Q 045762 107 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPV 186 (373)
Q Consensus 107 aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v 186 (373)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.+...++.+.+++. ..+|..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~~~--------~~~~~~- 82 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLAEARSRLP--------DCQFVE- 82 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHhCC--------CCeEEE-
Confidence 35567777765566789999999883 345566553 34689999998877766655421 233332
Q ss_pred CCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEee
Q 045762 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 187 ~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
.+++++.+. ..=+.++ +...+|++.+ . ..+|+.+ +.|+|.-.+++..
T Consensus 83 -~d~~~~~~~----~~fD~v~--~~~~l~~~~d-~-~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 83 -ADIASWQPP----QALDLIF--ANASLQWLPD-H-LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CchhccCCC----CCccEEE--EccChhhCCC-H-HHHHHHHHHhcCCCcEEEEEC
Confidence 222222111 1113443 4455687753 2 3455554 7799998777754
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=89.67 E-value=0.22 Score=39.62 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=47.8
Q ss_pred EecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEe-cCCCccCcCcccccccC
Q 045762 124 IDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRV 202 (373)
Q Consensus 124 IDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~-v~~~~e~l~~~~l~~~~ 202 (373)
+|+|.|.|.==..|++.+ |..++||++.+...++.+.+++.+.-.. .+++.. ...+..+.... ..
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAELGND---NFERLRFDVLDLFDYDPP----ES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC-------
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhcCCc---ceeEEEeecCChhhcccc----cc
Confidence 588888887555566555 7999999999988776666665554322 222221 11111111110 12
Q ss_pred CceEEEeeccccCCCCCCcHHHHHHHHH-hcCCcEE
Q 045762 203 GEALAVNAVNRLHRVPSNCLGNLLAMIR-DQAPNIV 237 (373)
Q Consensus 203 ~EalaVn~~~~Lh~l~~~~~~~~L~~ir-~L~P~vv 237 (373)
=+.++.+ ..|||+ +....+|+.++ -|+|.-+
T Consensus 67 fD~V~~~--~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 67 FDLVVAS--NVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp -SEEEEE---TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred cceehhh--hhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 2344444 457999 45778888884 4777643
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=89.36 E-value=1.3 Score=41.63 Aligned_cols=111 Identities=24% Similarity=0.248 Sum_probs=74.6
Q ss_pred hccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcC
Q 045762 115 FEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLK 194 (373)
Q Consensus 115 ~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~ 194 (373)
+.-+.---|+|+|+|.|.+ -+-|+.|- |.=.||||+++.+-+.++.+|| .+..|.- .++.+.+
T Consensus 26 Vp~~~~~~v~DLGCGpGns----TelL~~Rw---P~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~--aDl~~w~ 88 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNS----TELLARRW---PDAVITGIDSSPAMLAKAAQRL--------PDATFEE--ADLRTWK 88 (257)
T ss_pred CCccccceeeecCCCCCHH----HHHHHHhC---CCCeEeeccCCHHHHHHHHHhC--------CCCceec--ccHhhcC
Confidence 3345556799999999975 34556665 5568999999998877665544 4444432 1222222
Q ss_pred cccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 045762 195 PHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGP 249 (373)
Q Consensus 195 ~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ea~~n~~ 249 (373)
++ .+-..+.-|.+| |.++|+.+.|-+.+-.|.|.-+.-|-.-.|+..|
T Consensus 89 p~----~~~dllfaNAvl---qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 89 PE----QPTDLLFANAVL---QWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred CC----Cccchhhhhhhh---hhccccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 21 233566677776 4567788888889999999988888665665554
No 38
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.34 E-value=3.1 Score=39.32 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=65.0
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+.+.+.++.+.+++.+ .|+.-.+..+..
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s~~~l~~a~~~~~~----~g~~~~v~~~~~ 100 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLSAEMIQRAKQAAEA----KGVSDNMQFIHC 100 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECCHHHHHHHHHHHHh----cCCccceEEEEc
Confidence 35666665 334699999999994 45556655 2 4799999988888877765543 444322222333
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcEEEEE
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNIVTIV 240 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~vv~~~ 240 (373)
+.+++.+. .-..=+.++ |...|||+.+ ...+|+. .+-|+|.-.+++
T Consensus 101 d~~~l~~~--~~~~fD~V~--~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 101 AAQDIAQH--LETPVDLIL--FHAVLEWVAD--PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CHHHHhhh--cCCCCCEEE--ehhHHHhhCC--HHHHHHHHHHHcCCCeEEEE
Confidence 44443221 001113333 4455787753 2355555 467999966654
No 39
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=89.16 E-value=2.7 Score=39.17 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=65.0
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..++++..=.+.-+|||+|-|.|. +..+++.+. |.+|+|..+.|. .++.+.+ .=..+|.+-
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~-v~~~~~~---------~~rv~~~~g-- 150 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPE-VIEQAKE---------ADRVEFVPG-- 150 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HH-HHCCHHH---------TTTEEEEES--
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHh-hhhcccc---------ccccccccc--
Confidence 456666665566689999999994 344555443 788999998654 2222222 223455441
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCc---EEEEEeecCCCC
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPN---IVTIVEQEASHN 247 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~---vv~~~E~ea~~n 247 (373)
|+- +.+.. .+++.+ ..-||...++....+|+++ ++|+|. .++|+|.=.+.+
T Consensus 151 ---d~f-~~~P~--~D~~~l--~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 151 ---DFF-DPLPV--ADVYLL--RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp ----TT-TCCSS--ESEEEE--ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred ---cHH-hhhcc--ccceee--ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 111 11111 334444 4457999888788888887 568886 777778754433
No 40
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=88.69 E-value=2.2 Score=42.48 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=66.3
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhc---CCCeEEEe--cC--CCcc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSL---HVPFEFHP--VG--EQLE 191 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~l---gv~fef~~--v~--~~~e 191 (373)
+..+|+|+++|.|. .|.+=...+ -=++.||+...++++++.+|..+.-+.. ...+.|.. +. ...+
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS
T ss_pred CCCeEEEecCCCch---hHHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc
Confidence 67899999999886 222222222 2367899999999999999986555332 22233333 11 1111
Q ss_pred CcCcccccccCCceEEEeeccccCCCCCC--cHHHHHHHH-HhcCCcEEEEE-eecC
Q 045762 192 DLKPHMFNRRVGEALAVNAVNRLHRVPSN--CLGNLLAMI-RDQAPNIVTIV-EQEA 244 (373)
Q Consensus 192 ~l~~~~l~~~~~EalaVn~~~~Lh~l~~~--~~~~~L~~i-r~L~P~vv~~~-E~ea 244 (373)
.+. +.+.......=+|+|+|.||..-.. ....+|+.| ..|+|.-+++. =.|+
T Consensus 134 ~l~-~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 134 SLR-EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHH-CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhh-hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 111 1112223467789999999999743 356677777 67999955554 3443
No 41
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=88.31 E-value=7.2 Score=35.12 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHH
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKET 166 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~t 166 (373)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.+.+.++.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHHH
Confidence 445555433 379999999995 5566765432 3569998877655544
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.11 E-value=5.1 Score=39.06 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=76.3
Q ss_pred HHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 105 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 105 ~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
+..-..|++-+.=++--||.|+|.| |-+|+.-.|.+.+ .++|||.-+.+.+..+.+|+ +..|++=..+
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r~----~~~gl~~~v~ 125 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKRI----AARGLEDNVE 125 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHHH----HHcCCCcccE
Confidence 3344556666655677899999665 9999999998863 68999998877776666553 4556653333
Q ss_pred ecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCcEE
Q 045762 185 PVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPNIV 237 (373)
Q Consensus 185 ~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~vv 237 (373)
....++.++... -| .|-++-.++|+..+..+.+++.+++ |+|.-.
T Consensus 126 v~l~d~rd~~e~-----fD---rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 126 VRLQDYRDFEEP-----FD---RIVSVGMFEHVGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred EEeccccccccc-----cc---eeeehhhHHHhCcccHHHHHHHHHhhcCCCce
Confidence 334566666543 12 2344556688887778999999966 777743
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=87.74 E-value=10 Score=37.62 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=59.3
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC--CeEEEecCCCccCcCcc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV--PFEFHPVGEQLEDLKPH 196 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv--~fef~~v~~~~e~l~~~ 196 (373)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+...++.+.++ ++..|+ ..+|.. .+..++.
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~--~D~~~~~-- 181 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQV--ADALNQP-- 181 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--cCcccCC--
Confidence 34579999999885 4556666542 3899999887766555443 333444 344543 2222221
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcE-EEEEe
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNI-VTIVE 241 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~v-v~~~E 241 (373)
..++..=+|-+...+||+.+ ...+|+. .|-|+|.- +++++
T Consensus 182 ---~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 182 ---FEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ---CCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEE
Confidence 22333334445567788864 3456655 47799974 44443
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=87.59 E-value=4.7 Score=40.87 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..|++.+.-.+.=+|+|+|.|.|. +...++.+.+ .++|||+.+.+.++.+.++.. +++.+|.. .
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~~------~l~v~~~~--~ 220 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERCA------GLPVEIRL--Q 220 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHhc------cCeEEEEE--C
Confidence 445555543444589999987664 5555665543 489999998887877766652 23344432 2
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
+..+++ ..=+.++ +...++|+.....+.+++.+ +-|+|.-.+++
T Consensus 221 D~~~l~------~~fD~Iv--s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 221 DYRDLN------GQFDRIV--SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred chhhcC------CCCCEEE--EeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 222221 1112333 23345787655566777776 56899966655
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=85.55 E-value=9.5 Score=35.08 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=70.4
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..+++|++--+.-.++|+|.|.|.- + --||.+ -+.+|+++.+...++. |.+.|+.-+++.+... .
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~-----G~~VtAvD~s~~al~~----l~~~a~~~~l~i~~~~--~ 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ-----GFDVTAVDISPVALEK----LQRLAEEEGLDIRTRV--A 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT-----T-EEEEEESSHHHHHH----HHHHHHHTT-TEEEEE---
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC-----CCeEEEEECCHHHHHH----HHHHHhhcCceeEEEE--e
Confidence 4577777765667899999999952 1 124544 4789999988876654 5667888898866654 2
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCcEEEEE
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPNIVTIV 240 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~vv~~~ 240 (373)
++++... +++.=+|.+...++++..+.++.+++.+++ ++|..+.+.
T Consensus 85 Dl~~~~~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 85 DLNDFDF------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp BGCCBS-------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cchhccc------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 3333321 123334556666788988888999998854 899855444
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=85.44 E-value=25 Score=32.00 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=58.7
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcCcccc
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~~~~l 198 (373)
.-.|+|+|.|.|. .++ .++.+. |..++|+|+.+.+.++.+.+++ +..|++ ++|.. .+.+++..
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s~~~l~~A~~~~----~~~~l~~i~~~~--~d~~~~~~--- 109 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSLGKKIAFLREVA----AELGLKNVTVVH--GRAEEFGQ--- 109 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCcHHHHHHHHHHH----HHcCCCCEEEEe--ccHhhCCC---
Confidence 3479999999884 222 223221 3568999999887777766543 445553 44443 34444332
Q ss_pred cccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEee
Q 045762 199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
..+-+.+..|+. ...+.+++.+ +.|+|.-.+++..
T Consensus 110 -~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 -EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123456666542 2356777765 7899997777663
No 47
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=85.31 E-value=5.3 Score=38.65 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..|+|.+.=++-=||+|+|.| |-.++..+|++.| .++|||..+.+..+.+.++ ++..|++=.......
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYARER----IREAGLEDRVEVRLQ 119 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHH----HHCSTSSSTEEEEES
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEEe
Confidence 456777654555699999766 8889999998863 5899999877666555544 456677643343333
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
+..+++. +=++ |-++-.+-|+.....+.+++.+ +-|+|.-..++.
T Consensus 120 D~~~~~~------~fD~--IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 120 DYRDLPG------KFDR--IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGG---------S-SE--EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred eccccCC------CCCE--EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4444433 2223 2233446788766688999998 569999777664
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=84.86 E-value=28 Score=32.47 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=61.0
Q ss_pred HHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 105 FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 105 ~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
...-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ | -++|+++.+.+.++.+.++.. ...|
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~~v~~~D~s~~~l~~a~~~~~--------~~~~- 89 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G---SQVTALDLSPPMLAQARQKDA--------ADHY- 89 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C---CeEEEEECCHHHHHHHHhhCC--------CCCE-
Confidence 3344556666665444579999999994 55666653 2 479999988877765554421 1122
Q ss_pred ecCCCccCcCcccccccCC--ceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 185 PVGEQLEDLKPHMFNRRVG--EALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 185 ~v~~~~e~l~~~~l~~~~~--EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
+..+++++. ..++ +.|+ +.+.+|+.. + ...+|+.+ +-|+|.-.++.
T Consensus 90 -~~~d~~~~~-----~~~~~fD~V~--s~~~l~~~~-d-~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 90 -LAGDIESLP-----LATATFDLAW--SNLAVQWCG-N-LSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred -EEcCcccCc-----CCCCcEEEEE--ECchhhhcC-C-HHHHHHHHHHHcCCCeEEEE
Confidence 223333332 2222 3443 344456554 3 34555554 67999755554
No 49
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=84.29 E-value=5.7 Score=36.36 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=57.3
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC--CeEEEecCCCccCcCcc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV--PFEFHPVGEQLEDLKPH 196 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv--~fef~~v~~~~e~l~~~ 196 (373)
+.-.|+|+|.|.|.- ...|+.+ + .++||++.+...++.+.++..+ .++ ..+|... +++..+
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~~i~~a~~~~~~----~~~~~~i~~~~~--d~~~~~-- 125 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQMVEEARERAPE----AGLAGNITFEVG--DLESLL-- 125 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHHHHHHHHHHHHh----cCCccCcEEEEc--Cchhcc--
Confidence 456899999999953 3445543 2 2499999988888877766543 333 3344431 122111
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEE
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~ 240 (373)
..=+.++ +...+||..++....+++.+.++.+..+++.
T Consensus 126 ----~~fD~v~--~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 126 ----GRFDTVV--CLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ----CCcCEEE--EcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 1112333 3344677776667788888876555544443
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=84.10 E-value=22 Score=35.50 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=68.9
Q ss_pred hHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecC
Q 045762 108 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVG 187 (373)
Q Consensus 108 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~ 187 (373)
...+++.+.....=+|+|+|.|.|. +-..++.+. |..++|+++.+...++.+.+++.. .++..++...
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~~~- 252 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVFAS- 252 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEEEc-
Confidence 3555666654333379999999996 444455442 457899999999888888776654 3455555431
Q ss_pred CCccCcCcccccccCCceEEEeeccccCCCCCC---cHHHHHHHH-HhcCCcEEEEEee
Q 045762 188 EQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSN---CLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 188 ~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~---~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
+-.+.+ -..=+.++.|-.| |.-... ....+++.+ +.|+|.-..+.-.
T Consensus 253 D~~~~~------~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 253 NVFSDI------KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cccccc------CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 101111 1223677778765 554322 245666654 6699986554433
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=82.84 E-value=12 Score=35.48 Aligned_cols=100 Identities=21% Similarity=0.190 Sum_probs=54.5
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCccCcCccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~e~l~~~~l~ 199 (373)
=+|+|+|.|.|.--. .++... | |.-+||||+.+...++.+.++.. ..|+ ..+|. ..+++++.
T Consensus 79 ~~VLDiG~G~G~~~~----~~a~~~-g-~~~~v~gvD~s~~~l~~A~~~~~----~~g~~~v~~~--~~d~~~l~----- 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCF----LAARRV-G-PTGKVIGVDMTPEMLAKARANAR----KAGYTNVEFR--LGEIEALP----- 141 (272)
T ss_pred CEEEEeCCCCCHHHH----HHHHHh-C-CCCEEEEECCCHHHHHHHHHHHH----HcCCCCEEEE--EcchhhCC-----
Confidence 489999999874221 122222 2 45589999998877777665543 3444 23332 23444432
Q ss_pred ccCC--ceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEE
Q 045762 200 RRVG--EALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 200 ~~~~--EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~ 240 (373)
..++ +.++.|++ +|+..+ ....+=...+-|+|.-.+++
T Consensus 142 ~~~~~fD~Vi~~~v--~~~~~d-~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 142 VADNSVDVIISNCV--INLSPD-KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred CCCCceeEEEEcCc--ccCCCC-HHHHHHHHHHHcCCCcEEEE
Confidence 2222 35555665 455543 22333334577999844443
No 52
>PRK06922 hypothetical protein; Provisional
Probab=82.37 E-value=9.6 Score=41.44 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=62.2
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNR 200 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~ 200 (373)
-.|+|+|.|.|. +...|+.+. |..++|||+.+...++.+.+++. ..|.++++.. .+..++.. ..
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~I~--gDa~dLp~---~f 483 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNVIK--GDAINLSS---SF 483 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEEEE--cchHhCcc---cc
Confidence 579999999984 445666542 56899999999988887766542 2344544422 22222210 02
Q ss_pred cCCceEEEeeccccCCCCC-----------CcHHHHHHHH-HhcCCc-EEEEEee
Q 045762 201 RVGEALAVNAVNRLHRVPS-----------NCLGNLLAMI-RDQAPN-IVTIVEQ 242 (373)
Q Consensus 201 ~~~EalaVn~~~~Lh~l~~-----------~~~~~~L~~i-r~L~P~-vv~~~E~ 242 (373)
.++..=+|-+.+.+|++.+ +....+|+.+ +.|+|. .++++|.
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2333333344555677631 2345666665 789998 4444454
No 53
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=82.34 E-value=8.1 Score=34.00 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=61.7
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
+.|++.+.-.+.=+|+|+|.|.|. |...|+.+ + -++|+|+.+...++.+.+++.. .+ .+++ +..
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~~~----~~-~v~i--i~~ 66 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKFAA----AD-NLTV--IHG 66 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHhcc----CC-CEEE--EEC
Confidence 346666654444489999999886 55556665 2 3799999988777777665532 11 2333 333
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeec
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQE 243 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~e 243 (373)
+..++.... ..-..++-|..+ ++..+-+..+++.. .+.+..+++++.|
T Consensus 67 D~~~~~~~~---~~~d~vi~n~Py---~~~~~~i~~~l~~~-~~~~~~~l~~q~e 114 (169)
T smart00650 67 DALKFDLPK---LQPYKVVGNLPY---NISTPILFKLLEEP-PAFRDAVLMVQKE 114 (169)
T ss_pred chhcCCccc---cCCCEEEECCCc---ccHHHHHHHHHhcC-CCcceEEEEEEHH
Confidence 444432211 112456556544 33222233333321 1447788888876
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=81.65 E-value=10 Score=34.60 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=56.4
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRR 201 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~ 201 (373)
+|+|+|.|.|. +...++++. |..++||++.+.+.++.+.+++. ..|+.-....+..+..+.... .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~----~~gl~~~i~~~~~d~~~~~~~----~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIR----ALGLQGRIRIFYRDSAKDPFP----D 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH----hcCCCcceEEEecccccCCCC----C
Confidence 68999998775 344556543 34689999988777776666543 335443333222222211110 1
Q ss_pred CCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 202 VGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
.=+.+ -+...+||+.+ ...+|+.+ +.|+|.-.+++
T Consensus 67 ~fD~I--~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 67 TYDLV--FGFEVIHHIKD--KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCEe--ehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEE
Confidence 11233 23444677743 56777777 55999955444
No 55
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=81.37 E-value=19 Score=36.58 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=68.2
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
..+++.+.....=.|+|+|.|.|. +--.++.+. |..++|+|+.+...++.+.+++......-.-.++|.. .+
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~-~D 289 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI-NN 289 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE-cc
Confidence 335555543222279999999997 333455542 6789999999988888887776433211011344432 11
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCC-cHHHHHHH-HHhcCCcEEEEEee
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSN-CLGNLLAM-IRDQAPNIVTIVEQ 242 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~-~~~~~L~~-ir~L~P~vv~~~E~ 242 (373)
-++.+.. ..=+.|+.|-.|...+-..+ ....+++. -+-|+|.-...++.
T Consensus 290 ~l~~~~~-----~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 290 ALSGVEP-----FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccCCC-----CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1122211 12257777877744332332 23455554 46799997666664
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=81.35 E-value=16 Score=32.80 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=54.8
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcCccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~~~~l~ 199 (373)
-+|+|+|.|.|. .++. |+... |..++|||+.+...++.+.+++ +..|++ ++| +..+++++..
T Consensus 44 ~~vLDiGcGtG~--~s~~--la~~~---~~~~V~~iD~s~~~~~~a~~~~----~~~~~~~i~~--i~~d~~~~~~---- 106 (181)
T TIGR00138 44 KKVIDIGSGAGF--PGIP--LAIAR---PELKLTLLESNHKKVAFLREVK----AELGLNNVEI--VNGRAEDFQH---- 106 (181)
T ss_pred CeEEEecCCCCc--cHHH--HHHHC---CCCeEEEEeCcHHHHHHHHHHH----HHhCCCCeEE--Eecchhhccc----
Confidence 489999999984 2221 12111 4568999998887666555443 445653 444 3344444421
Q ss_pred ccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 200 RRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 200 ~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
..+=+.++.|+ +|+ .+.+++.+ +-|+|.-.+++.
T Consensus 107 ~~~fD~I~s~~---~~~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 EEQFDVITSRA---LAS-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cCCccEEEehh---hhC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 11224555554 333 34556654 448999887776
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=81.11 E-value=18 Score=35.83 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=59.9
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
.+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ . +++||+++...+.+. +...+++..- -...+.+ .
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~~ml~q~-~~~~~~~~~~-~~v~~~~--~ 178 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTVLFLCQF-EAVRKLLDND-KRAILEP--L 178 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCHHHHHHH-HHHHHHhccC-CCeEEEE--C
Confidence 346665543334489999999997 34444433 33 2 789999887655442 2222232211 1233332 2
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
.++++... ..=++|+ |+..|||+. +. ..+|+.+ +.|+|.-.++.+
T Consensus 179 ~ie~lp~~----~~FD~V~--s~gvL~H~~-dp-~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 GIEQLHEL----YAFDTVF--SMGVLYHRK-SP-LEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CHHHCCCC----CCcCEEE--EcchhhccC-CH-HHHHHHHHHhcCCCCEEEEE
Confidence 34444321 1123433 444568874 33 4455555 669999666654
No 58
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=80.45 E-value=26 Score=32.24 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=62.4
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcCccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~~~~l~ 199 (373)
-.|+|++.|.|. --+.+|+.. . -++|+|+.+.+.++.+.+++... |+. .+|. ..++.+.-+. .
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~a~~~a~~Nl~~~----~~~~v~~~--~~D~~~~l~~-~- 118 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRAVAQQLIKNLATL----KAGNARVV--NTNALSFLAQ-P- 118 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHHHHHHHHHHHHHh----CCCcEEEE--EchHHHHHhh-c-
Confidence 369999999884 224455532 1 38999998887777666554443 432 3332 2222221111 0
Q ss_pred ccCCceEEEeeccccCCCCCCcHHHHHHHHHh---cCCcEEEEEeecCCCC
Q 045762 200 RRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD---QAPNIVTIVEQEASHN 247 (373)
Q Consensus 200 ~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~---L~P~vv~~~E~ea~~n 247 (373)
..+=+.|++|=.|. ..-...+++.|.. ++|+-++++|.....+
T Consensus 119 ~~~fDlV~~DPPy~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 119 GTPHNVVFVDPPFR-----KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred CCCceEEEECCCCC-----CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 11236777776642 1224567777766 7999999999876543
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=79.16 E-value=52 Score=30.18 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=56.5
Q ss_pred CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccc
Q 045762 118 EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHM 197 (373)
Q Consensus 118 ~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~ 197 (373)
.+..+|+|+|.|.|.- ...++.+ + .++|+++.+...++.+.+++. ..++..+|.. .+++++...
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~--~~~~~~~~~- 110 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL--G---ADVTGIDASEENIEVARLHAL----ESGLKIDYRQ--TTAEELAAE- 110 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc--C---CeEEEEcCCHHHHHHHHHHHH----HcCCceEEEe--cCHHHhhhh-
Confidence 3456899999998863 3344443 2 369999988877776665543 2344445543 222222110
Q ss_pred ccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 198 FNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 198 l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
.-..-+.+ -+...++++.+ ...+|+.+ +.|+|.-.+++.
T Consensus 111 -~~~~fD~I--i~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 111 -HPGQFDVV--TCMEMLEHVPD--PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -cCCCccEE--EEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEE
Confidence 00112333 33444666643 34555554 668898555554
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=78.68 E-value=46 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=35.4
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
.|+|+|.|.|. +...++.+ ++ ++|+++.+.+.++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH----HcCCceEEE
Confidence 49999999994 45556654 33 89999999888888877764 234444443
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=78.26 E-value=35 Score=31.75 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=61.4
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEE--------------Ee
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEF--------------HP 185 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef--------------~~ 185 (373)
.-.|+|.|.|.|. =+..||.+ -..+|||+.+...++.. ++..|+..+. +.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~Ai~~~-------~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSELAVEQF-------FAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHHHHHHH-------HHHcCCCccccccccccccccCceEE
Confidence 3478999999884 23445653 35899999988777653 2344443221 00
Q ss_pred cCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCc--EEEEEee--cCCCCCCch
Q 045762 186 VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPN--IVTIVEQ--EASHNGPYF 251 (373)
Q Consensus 186 v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~--vv~~~E~--ea~~n~~~F 251 (373)
...++-++.++. .+..=.|.-.-.+||+.++.+..++..|.+ |+|. +++++.. +...++|+|
T Consensus 102 ~~~D~~~l~~~~----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 102 YCGDFFALTAAD----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred EECcccCCCccc----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 111222222111 111122222234688887778888888855 9999 5555542 233345543
No 62
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=77.96 E-value=5.2 Score=34.36 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=33.2
Q ss_pred ccCceeEEEecCCCCCCccHHHHHHHhcCCC-CCCeEEEEeecCChhHHHHHHHH
Q 045762 116 EAEERVHVIDLDILQGYQWPAFMQALAARPG-GAPFLRITGVGATIESAKETGRC 169 (373)
Q Consensus 116 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~-gpp~lrIT~i~~~~~~l~~tg~r 169 (373)
...+..+|||+|.|.|. |=+.|+..-. -.|.++|+||+.+....+.+-++
T Consensus 22 ~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred ccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHH
Confidence 34778999999999995 3333443110 02789999999887655444444
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=77.25 E-value=14 Score=33.63 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=60.4
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCc-cCcCcc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQL-EDLKPH 196 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~-e~l~~~ 196 (373)
+.-.|+|+|.|.|.-...| +.+. |.-++|||+.+.+.++.+.+++... ++ +++|. ..++ +.+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~~---p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~--~~d~~~~l~~~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKAN---PDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLL--CGDAVEVLLDM 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHHC---CCccEEEEEechHHHHHHHHHHHHc----CCCCEEEE--ecCHHHHHHHH
Confidence 4467999999999754444 3332 4568999999988888777665442 33 24443 2333 333210
Q ss_pred cccccCCceEEEeecccc----CCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 197 MFNRRVGEALAVNAVNRL----HRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~L----h~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
+.-..=+.+++|..... |+........+|+.+ +-|+|.-.++.
T Consensus 107 -~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 107 -FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred -cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 11111245666654322 222111246777776 57999855554
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=76.65 E-value=59 Score=29.46 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=55.7
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCccCcCccc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQLEDLKPHM 197 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~e~l~~~~ 197 (373)
+.-.|+|+|.+.|. +...++.. + .++|+++.+...+..+.+++.. .++ +..|.. .+.++.....
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~--~d~~~~~~~~ 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAKK----DPLLKIEYRC--TSVEDLAEKG 109 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHH----cCCCceEEEe--CCHHHhhcCC
Confidence 35689999999884 33344432 2 2499999888777766655443 344 344432 2222222111
Q ss_pred ccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 198 FNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 198 l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
..+-+.++.+ ..+|+..+ ...+|+.+ +.|+|.-++++
T Consensus 110 --~~~~D~i~~~--~~l~~~~~--~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 110 --AKSFDVVTCM--EVLEHVPD--PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred --CCCccEEEeh--hHHHhCCC--HHHHHHHHHHhcCCCcEEEE
Confidence 1123444433 34566643 45666665 56888865554
No 65
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=73.74 E-value=96 Score=30.57 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhhCCcchhhHHH-------------hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCC
Q 045762 82 NSLEVLKIYQIVYQACPYVKFAHFT-------------ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGA 148 (373)
Q Consensus 82 ~~~~~~~a~~~~~~~~P~~~fa~~t-------------aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gp 148 (373)
+..+....+..+....||-+-.+.. --+.|+..+..-+.-+|+|+|.|.|.. +..++.+ |+
T Consensus 72 ~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~ 145 (322)
T PRK15068 72 SEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GA 145 (322)
T ss_pred CHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CC
Confidence 3334445566666677775543322 123444455422234799999999952 3344544 32
Q ss_pred CeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHH
Q 045762 149 PFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAM 228 (373)
Q Consensus 149 p~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ 228 (373)
- +++||+++...+.+.. ...+++.. +-+.+|.. .+++++.. ...=+++ -|+..|||+. +. ..+|+.
T Consensus 146 ~--~V~GiD~S~~~l~q~~-a~~~~~~~-~~~i~~~~--~d~e~lp~----~~~FD~V--~s~~vl~H~~-dp-~~~L~~ 211 (322)
T PRK15068 146 K--LVVGIDPSQLFLCQFE-AVRKLLGN-DQRAHLLP--LGIEQLPA----LKAFDTV--FSMGVLYHRR-SP-LDHLKQ 211 (322)
T ss_pred C--EEEEEcCCHHHHHHHH-HHHHhcCC-CCCeEEEe--CCHHHCCC----cCCcCEE--EECChhhccC-CH-HHHHHH
Confidence 2 4999998765443211 11222211 22344443 23444421 0111333 3445578874 33 345555
Q ss_pred H-HhcCCcEEEEEe
Q 045762 229 I-RDQAPNIVTIVE 241 (373)
Q Consensus 229 i-r~L~P~vv~~~E 241 (373)
+ +.|+|...++.|
T Consensus 212 l~~~LkpGG~lvl~ 225 (322)
T PRK15068 212 LKDQLVPGGELVLE 225 (322)
T ss_pred HHHhcCCCcEEEEE
Confidence 4 678999766665
No 66
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=71.31 E-value=79 Score=30.16 Aligned_cols=110 Identities=11% Similarity=0.170 Sum_probs=59.9
Q ss_pred CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcC-CCeEEEecCCCccCcCcc
Q 045762 118 EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLH-VPFEFHPVGEQLEDLKPH 196 (373)
Q Consensus 118 ~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lg-v~fef~~v~~~~e~l~~~ 196 (373)
..+ +|+|+|.|.|. +...+..++ +.-++|+|+.+...++.+.+.+......+. -.+++.. .+..+-+...
T Consensus 72 ~p~-~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~~ 142 (270)
T TIGR00417 72 NPK-HVLVIGGGDGG----VLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI-DDGFKFLADT 142 (270)
T ss_pred CCC-EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE-CchHHHHHhC
Confidence 344 89999999886 344444443 345799999888877777776655543221 1233322 1111111100
Q ss_pred cccccCCceEEEeeccccCCCCCCc--HHHHHHHH-HhcCCcEEEEEe
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNC--LGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~--~~~~L~~i-r~L~P~vv~~~E 241 (373)
-..=+.++++.....+ .... ...+++.+ +.|+|.-++++.
T Consensus 143 ---~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ---ENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ---CCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1233577776542211 1111 35677665 569999888775
No 67
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=69.83 E-value=18 Score=34.44 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l 198 (373)
...-|.|+|.|-| .|-+.+|.. | ..+|||+.....++.+. ..|..-|+..+|... ..|++....
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~I~~Ak----~ha~e~gv~i~y~~~--~~edl~~~~- 122 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKPIEVAK----LHALESGVNIDYRQA--TVEDLASAG- 122 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHHHHHHH----Hhhhhccccccchhh--hHHHHHhcC-
Confidence 4567999999988 788888854 2 89999998777666554 346667777777652 344443321
Q ss_pred cccCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCcEEEEE
Q 045762 199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPNIVTIV 240 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~vv~~~ 240 (373)
+-.=+|-|+=-|+|+.+. +.|++. .+-++|.-+++.
T Consensus 123 ----~~FDvV~cmEVlEHv~dp--~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 123 ----GQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred ----CCccEEEEhhHHHccCCH--HHHHHHHHHHcCCCcEEEE
Confidence 333467788889999753 346655 577899855544
No 68
>PRK14968 putative methyltransferase; Provisional
Probab=68.62 E-value=69 Score=27.90 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=31.6
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
.-.|+|+|.|.|. +...|+.+ .-++||++.+.+.++.+.+++.
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-----cceEEEEECCHHHHHHHHHHHH
Confidence 3469999999998 45555655 2479999988877777766553
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=68.61 E-value=21 Score=32.29 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=60.9
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccc
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~ 199 (373)
.--|+|+|.|.|. ++-.+|.+. |...++||+.+.+.++.+.+++.+ .|+. ..+.+..++.++....+.
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~~----~~l~-ni~~i~~d~~~~~~~~~~ 84 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIHTPIVLAANNKANK----LGLK-NLHVLCGDANELLDKFFP 84 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHHH----hCCC-CEEEEccCHHHHHHhhCC
Confidence 3479999999886 444555442 567899999988878777666543 3443 223333344333211111
Q ss_pred ccCCceEEEeecccc----CCCCCCcHHHHHHHH-HhcCCcEEEEEeec
Q 045762 200 RRVGEALAVNAVNRL----HRVPSNCLGNLLAMI-RDQAPNIVTIVEQE 243 (373)
Q Consensus 200 ~~~~EalaVn~~~~L----h~l~~~~~~~~L~~i-r~L~P~vv~~~E~e 243 (373)
-..=+.+.+|+..-- |+...-....+++.+ +.|+|.-.+.+..|
T Consensus 85 ~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 85 DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 001135666653111 111100125677775 66899977766553
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=68.26 E-value=53 Score=29.90 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=58.6
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC--eEEEecC
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP--FEFHPVG 187 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~--fef~~v~ 187 (373)
.+++.++-.+.-+|+|+|.|.|..=..|.+.+ + +.-++++|+.+.+.++.+.+++.+ .|+. .+|..
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~----~--~~g~V~~iD~~~~~~~~a~~~l~~----~~~~~~v~~~~-- 130 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI----E--RRGKVYTVEIVKELAIYAAQNIER----LGYWGVVEVYH-- 130 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc----C--CCCEEEEEeCCHHHHHHHHHHHHH----cCCCCcEEEEE--
Confidence 45566654445679999998887433333322 1 123799999988888777777643 3443 44433
Q ss_pred CCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEE
Q 045762 188 EQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTI 239 (373)
Q Consensus 188 ~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~ 239 (373)
.+..+.-+. ..+=+.++++... +++.+ .+ .+.|+|.-.++
T Consensus 131 ~d~~~~~~~---~~~fD~Ii~~~~~--~~~~~----~l---~~~L~~gG~lv 170 (205)
T PRK13944 131 GDGKRGLEK---HAPFDAIIVTAAA--STIPS----AL---VRQLKDGGVLV 170 (205)
T ss_pred CCcccCCcc---CCCccEEEEccCc--chhhH----HH---HHhcCcCcEEE
Confidence 222211111 1344677777653 45542 33 35577864433
No 71
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=66.52 E-value=50 Score=24.41 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRR 201 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~ 201 (373)
+|+|+|.+.|. +...++. .+..++++++.+...+..+.+. ......-+.+|.. .++.+... ....
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~--~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELARKA---AAALLADNVEVLK--GDAEELPP--EADE 65 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHHHH---HhcccccceEEEE--cChhhhcc--ccCC
Confidence 47999998884 4555554 2457999999877665555431 1111122333332 23333221 1111
Q ss_pred CCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEe
Q 045762 202 VGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVE 241 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E 241 (373)
.-+.+.+|.. +++. .+....+++.+ +.++|...+++.
T Consensus 66 ~~d~i~~~~~--~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 66 SFDVIISDPP--LHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceEEEEEccc--eeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2245555444 3332 23345666664 457888766654
No 72
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=65.83 E-value=74 Score=32.76 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=63.5
Q ss_pred hhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCcc
Q 045762 113 EAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQLE 191 (373)
Q Consensus 113 eA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~e 191 (373)
+.+.-.+.-+|+|+|.|.|. +--.||.+. -+++||+.+.+.++.+.+++. ..|+ ..+|.. .+++
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~----~~~~~~v~~~~--~d~~ 355 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENAR----RNGLDNVTFYH--ANLE 355 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH----HcCCCceEEEE--eChH
Confidence 33333344689999999996 333456542 389999999988888776543 3344 244433 2222
Q ss_pred CcCcc-cccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeec
Q 045762 192 DLKPH-MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQE 243 (373)
Q Consensus 192 ~l~~~-~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~e 243 (373)
+.... .+.-..-+.|++|=.. . ....++..+.+++|+-++.+.-+
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr----~---g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPR----A---GAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCC----c---ChHHHHHHHHhcCCCeEEEEEeC
Confidence 21110 0101122567666331 1 24567788889999988887653
No 73
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=65.65 E-value=22 Score=34.11 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCcchhhH-HHhhHHHH----hhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHH
Q 045762 97 CPYVKFAH-FTANQAIF----EAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCL 170 (373)
Q Consensus 97 ~P~~~fa~-~taNqaIl----eA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL 170 (373)
.|--+++. |..|+.|. +.+.-.+.-+|+|+|.|.|. +...|+.+ + + ++|||+.+.+.++.+.+++
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~-~--~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--A-A--KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--C-C--cEEEEECCHHHHHHHHHhh
Confidence 44444444 44444444 44443455689999999884 66666766 2 2 8999999887666665543
No 74
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.53 E-value=13 Score=34.04 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=40.3
Q ss_pred HhhhccCceeEEEecCCCCC---CccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHH
Q 045762 112 FEAFEAEERVHVIDLDILQG---YQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELA 174 (373)
Q Consensus 112 leA~~g~~~VHIIDf~i~~G---~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA 174 (373)
|-+++-.+.=|++|+|.+.| .+|. ++ .|+-|+++|+.+.+.++.+.++..+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 34444444449999999988 4664 21 379999999999999999998887775
No 75
>PRK00811 spermidine synthase; Provisional
Probab=64.44 E-value=83 Score=30.36 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=59.6
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhc--CCCeEEEecCCCccCcCccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSL--HVPFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~l--gv~fef~~v~~~~e~l~~~~l~ 199 (373)
+|+|+|.|.|. +...+.+++ +.-+||+|+.+...++.+.+.+.++.... +=.+++.. .+....... .
T Consensus 79 ~VL~iG~G~G~----~~~~~l~~~---~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~--~Da~~~l~~--~ 147 (283)
T PRK00811 79 RVLIIGGGDGG----TLREVLKHP---SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI--GDGIKFVAE--T 147 (283)
T ss_pred EEEEEecCchH----HHHHHHcCC---CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE--CchHHHHhh--C
Confidence 68999998775 344444442 34589999999988888877776655432 22233332 111111100 0
Q ss_pred ccCCceEEEeeccccCCCCCCc--HHHHHHHH-HhcCCcEEEEEee
Q 045762 200 RRVGEALAVNAVNRLHRVPSNC--LGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 200 ~~~~EalaVn~~~~Lh~l~~~~--~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
-..=+.+++++.- +.-.+.. ...|++.+ +.|+|.-++++-.
T Consensus 148 ~~~yDvIi~D~~d--p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 148 ENSFDVIIVDSTD--PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCcccEEEECCCC--CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 1123577776531 1111111 25677665 6799998877643
No 76
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=64.32 E-value=37 Score=32.35 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHH
Q 045762 84 LEVLKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESA 163 (373)
Q Consensus 84 ~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l 163 (373)
.++..+.+.|.+..=|-.+.. ..++.|.+.+. .+.-+|+|+|.|.|.--..|.+.+.. .....++||+.+...+
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~-~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~----~~~~~v~giD~s~~~l 125 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRD-AVANLLAERLD-EKATALLDIGCGEGYYTHALADALPE----ITTMQLFGLDISKVAI 125 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHH-HHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhccc----ccCCeEEEECCCHHHH
Confidence 377888888876432222222 22223333332 34467999999999643333333321 1125799999988777
Q ss_pred HHHHHH
Q 045762 164 KETGRC 169 (373)
Q Consensus 164 ~~tg~r 169 (373)
+.+.++
T Consensus 126 ~~A~~~ 131 (272)
T PRK11088 126 KYAAKR 131 (272)
T ss_pred HHHHHh
Confidence 665443
No 77
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=63.88 E-value=68 Score=29.68 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEE--------------Eec
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEF--------------HPV 186 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef--------------~~v 186 (373)
=.|+|.|.|.|.- ...||.+ -..+|||+.+...++.. ++..|+.... +.+
T Consensus 36 ~rvLd~GCG~G~d----a~~LA~~-----G~~V~gvD~S~~Ai~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~ 99 (213)
T TIGR03840 36 ARVFVPLCGKSLD----LAWLAEQ-----GHRVLGVELSEIAVEQF-------FAENGLTPTVTQQGEFTRYRAGNIEIF 99 (213)
T ss_pred CeEEEeCCCchhH----HHHHHhC-----CCeEEEEeCCHHHHHHH-------HHHcCCCcceeccccceeeecCceEEE
Confidence 4899999998842 3345654 25799999888777632 3333443221 111
Q ss_pred CCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcE
Q 045762 187 GEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNI 236 (373)
Q Consensus 187 ~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~v 236 (373)
..++.+++++. ...--+++-+ -.+||+..+.+..+++.| +.|+|.-
T Consensus 100 ~~D~~~~~~~~---~~~fD~i~D~-~~~~~l~~~~R~~~~~~l~~lLkpgG 146 (213)
T TIGR03840 100 CGDFFALTAAD---LGPVDAVYDR-AALIALPEEMRQRYAAHLLALLPPGA 146 (213)
T ss_pred EccCCCCCccc---CCCcCEEEec-hhhccCCHHHHHHHHHHHHHHcCCCC
Confidence 22333332211 1111222332 224788877777777776 6699983
No 78
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=62.91 E-value=94 Score=31.28 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=60.2
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCccCcCcccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQLEDLKPHMFNR 200 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~e~l~~~~l~~ 200 (373)
+|+|++.|.|. +--.+|.+ + -+++||+.+...++.+.+++ +..|+ ..+|. ..+.++.... . .
T Consensus 236 ~vLDL~cG~G~----~~l~la~~--~---~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~~--~~d~~~~~~~-~-~ 298 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP--D---TQLTGIEIESEAIACAQQSA----QMLGLDNLSFA--ALDSAKFATA-Q-M 298 (374)
T ss_pred EEEEccCCccH----HHHHHhhc--C---CeEEEEECCHHHHHHHHHHH----HHcCCCcEEEE--ECCHHHHHHh-c-C
Confidence 78999998883 33334432 1 37999999988887777664 34455 34443 2333332211 1 1
Q ss_pred cCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEee
Q 045762 201 RVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQ 242 (373)
Q Consensus 201 ~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ 242 (373)
..-+.|++|=. + ..-...++..+..++|+-++.++-
T Consensus 299 ~~~D~vi~DPP----r--~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 299 SAPELVLVNPP----R--RGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred CCCCEEEECCC----C--CCCcHHHHHHHHhcCCCeEEEEEe
Confidence 22467888843 2 112357788888999998888874
No 79
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=62.24 E-value=54 Score=32.82 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccc
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l 198 (373)
...+|+|+|.|.|.-. ..++.+.+ ..++|+++.+.+.++.+.++.. .-++. | +..+++++...
T Consensus 113 ~~~~VLDLGcGtG~~~----l~La~~~~---~~~VtgVD~S~~mL~~A~~k~~----~~~i~--~--i~gD~e~lp~~-- 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTT----LGIVKHVD---AKNVTILDQSPHQLAKAKQKEP----LKECK--I--IEGDAEDLPFP-- 175 (340)
T ss_pred CCCEEEEEecCCcHHH----HHHHHHCC---CCEEEEEECCHHHHHHHHHhhh----ccCCe--E--EeccHHhCCCC--
Confidence 4568999999998733 33444332 2589999988877776665431 12332 2 23334433211
Q ss_pred cccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
-..-+.++.|. .+|++.+. +.+|+.+ +.|+|.-.+++
T Consensus 176 -~~sFDvVIs~~--~L~~~~d~--~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 176 -TDYADRYVSAG--SIEYWPDP--QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -CCceeEEEEcC--hhhhCCCH--HHHHHHHHHhcCCCcEEEE
Confidence 11124455443 35776542 4556655 67999866544
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=62.10 E-value=73 Score=29.27 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=35.7
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEE
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFH 184 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~ 184 (373)
..+|+|+|.|.|. +...++.+. |..++||++.+...++.+.+++. ..|++ .+|.
T Consensus 88 ~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~~----~~~~~~~~~~ 142 (251)
T TIGR03534 88 PLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPEALAVARKNAA----RLGLDNVTFL 142 (251)
T ss_pred CCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH----HcCCCeEEEE
Confidence 4589999999884 444445432 45689999988877776665543 34554 4443
No 81
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=60.65 E-value=29 Score=27.87 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=31.6
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHH
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTEL 173 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~f 173 (373)
+|+|+|.|.|.. ...++.+. |..++|+++.+...++.+.+++..+
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~ 66 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARRF 66 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHHh
Confidence 899999998763 44445442 3478999999887777776655443
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=58.44 E-value=1.3e+02 Score=26.27 Aligned_cols=81 Identities=20% Similarity=0.063 Sum_probs=44.5
Q ss_pred EeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-Hhc
Q 045762 154 TGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQ 232 (373)
Q Consensus 154 T~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L 232 (373)
|||+.+.+-|+.+.++....+....-..+|.. .+.+++. ..++..=+|-+.+.+|++.+ ...+|+.+ |-|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~--~d~~~lp-----~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE--GDAIDLP-----FDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEE--echhhCC-----CCCCCeeEEEecchhhcCCC--HHHHHHHHHHHc
Confidence 68888888888776665443322222334432 2333432 22332223345677888853 45666666 669
Q ss_pred CCcE-EEEEeec
Q 045762 233 APNI-VTIVEQE 243 (373)
Q Consensus 233 ~P~v-v~~~E~e 243 (373)
+|.- +++.|-.
T Consensus 72 kpGG~l~i~d~~ 83 (160)
T PLN02232 72 KPGSRVSILDFN 83 (160)
T ss_pred CcCeEEEEEECC
Confidence 9984 4455554
No 83
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=57.67 E-value=1.1e+02 Score=29.63 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=129.6
Q ss_pred HHhhHHHHhhhccC-----ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC
Q 045762 105 FTANQAIFEAFEAE-----ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV 179 (373)
Q Consensus 105 ~taNqaIleA~~g~-----~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv 179 (373)
.-+--+||.+..++ ..-.+||+|.|...-=.-|+++|+.|. --+|...|+-+.+.|..+.+.|..-= -
T Consensus 59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~---~~~ryvpiDv~a~iL~~ta~ai~~~y----~ 131 (321)
T COG4301 59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRG---SLLRYVPIDVSASILRATATAILREY----P 131 (321)
T ss_pred chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcC---CcceeeeecccHHHHHHHHHHHHHhC----C
Confidence 34566788777654 256799999999888899999999774 25788899999998988887664322 2
Q ss_pred CeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCcEEEEEeecC---------CCCCC
Q 045762 180 PFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPNIVTIVEQEA---------SHNGP 249 (373)
Q Consensus 180 ~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~vv~~~E~ea---------~~n~~ 249 (373)
.++.+.+..+.+.--.+ +. +-|--+.|-.-..|.++.++....||..++. |+|.=-++.-.|- -.+.|
T Consensus 132 ~l~v~~l~~~~~~~La~-~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp 209 (321)
T COG4301 132 GLEVNALCGDYELALAE-LP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDP 209 (321)
T ss_pred CCeEeehhhhHHHHHhc-cc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCc
Confidence 35666665554432111 11 4456777776777888888888999999975 8998655554431 12222
Q ss_pred -chHHHHH-HHHHHHHHHHhhhhhcCCC--------CcHHHHHHHHHHhhHHHHHhh---------hhcCCccc----cc
Q 045762 250 -YFLGRFL-EALHYYSAIFDSLDATFPP--------DSAQRAKVEQYIFAPEIRNIV---------ACEGGERT----AR 306 (373)
Q Consensus 250 -~F~~RF~-eaL~~Y~alfdsLea~~~~--------~~~~R~~iE~~~l~~eI~niV---------a~eG~~R~----eR 306 (373)
.-..-|. +-|.+.-++|+ ..+.. -.++...||. ++.-+=.--| .-.-++++ .|
T Consensus 210 ~gVTa~FnlNvLa~lNr~f~---~nFD~~dfeh~Avyne~~~~iem-~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~ 285 (321)
T COG4301 210 QGVTAEFNLNVLAHLNRVFG---GNFDVDDFEHVAVYNEDEGRIEM-YLRAKREQTVRLGALDLTVDFAAGETILTEISR 285 (321)
T ss_pred cchHHHHHHHHHHHHHHHhc---cCCCcchhhhHhhhhhhHHHHHH-HhhcCCceEEEecCccceeecCCCceeehhhhh
Confidence 3333443 34455555543 22211 1333445555 4432211111 11111221 12
Q ss_pred ccchhHHHHHHhcCCCccccCChHHH
Q 045762 307 HERLEKWRKIMEGKGFRGVPLSANAV 332 (373)
Q Consensus 307 he~~~~W~~r~~~aGF~~~~ls~~~~ 332 (373)
--+.+.-++.++.+||+++.-..++.
T Consensus 286 Kfslq~irq~laa~gl~~v~~wtd~~ 311 (321)
T COG4301 286 KFSLQAIRQQLAAAGLEPVQKWTDAI 311 (321)
T ss_pred hCCHHHHHHHHHhcCCeEeeehhhhh
Confidence 22456778889999999998776554
No 84
>PLN03075 nicotianamine synthase; Provisional
Probab=55.25 E-value=1.6e+02 Score=28.98 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=62.8
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCccccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRR 201 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~ 201 (373)
.|+|+|.|.|-=+..++.+-. .|.-++|||+.+.+.++.+.+.+.+ ...+.=..+|+.. ++-++... ..
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~--Da~~~~~~---l~ 194 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTA--DVMDVTES---LK 194 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEEC--chhhcccc---cC
Confidence 489999998866665554322 2445999999998877766654433 1222213555542 11111110 11
Q ss_pred CCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEee
Q 045762 202 VGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
+=+.|.+. .||++..+.-..+|+.+ +.|+|.-++++..
T Consensus 195 ~FDlVF~~---ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 195 EYDVVFLA---ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CcCEEEEe---cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 22344443 67888645556777776 5599999999876
No 85
>PRK07402 precorrin-6B methylase; Provisional
Probab=54.78 E-value=39 Score=30.35 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=64.8
Q ss_pred hhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-C
Q 045762 102 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-P 180 (373)
Q Consensus 102 fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~ 180 (373)
...-...+.+++.+.-.+.=.|+|+|.|.|.. . ..++... |.-++|+|+.+.+.++.+.+++.++ ++ .
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~---~~la~~~---~~~~V~~vD~s~~~~~~a~~n~~~~----~~~~ 91 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTI-P---VEAGLLC---PKGRVIAIERDEEVVNLIRRNCDRF----GVKN 91 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHH-H---HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHh----CCCC
Confidence 34444566677777644445799999999972 2 2223221 2358999999988888777776543 43 2
Q ss_pred eEEEecCCCccC-cCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEEee
Q 045762 181 FEFHPVGEQLED-LKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 181 fef~~v~~~~e~-l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
++|.. .+..+ ++ .+. ...+.+.+. .......+++.+ +.|+|.-.+++..
T Consensus 92 v~~~~--~d~~~~~~--~~~-~~~d~v~~~--------~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 92 VEVIE--GSAPECLA--QLA-PAPDRVCIE--------GGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred eEEEE--CchHHHHh--hCC-CCCCEEEEE--------CCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 44432 22221 11 011 111233322 122345666665 5799997666664
No 86
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=54.66 E-value=16 Score=35.24 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=21.8
Q ss_pred ccCceeEEEecCCCCCCccHHHHHHHhc
Q 045762 116 EAEERVHVIDLDILQGYQWPAFMQALAA 143 (373)
Q Consensus 116 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~ 143 (373)
.|.+.+||||+|-+.+.+ -.+|+++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 388999999999877777 556777776
No 87
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=53.88 E-value=2.3e+02 Score=28.01 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=90.4
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC--CeEEEecCCCccCcC
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV--PFEFHPVGEQLEDLK 194 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv--~fef~~v~~~~e~l~ 194 (373)
..+.|||+|+-.|+|. -++++|..-|..|-++++- +-+.. .-+.|+.|.+ +.|+ -++|..-. .++
T Consensus 133 ~g~pvrIlDIAaG~GR---YvlDal~~~~~~~~~i~Lr--Dys~~-Nv~~g~~li~---~~gL~~i~~f~~~d----Afd 199 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGR---YVLDALEKHPERPDSILLR--DYSPI-NVEKGRALIA---ERGLEDIARFEQGD----AFD 199 (311)
T ss_pred cCCceEEEEeccCCcH---HHHHHHHhCCCCCceEEEE--eCCHH-HHHHHHHHHH---HcCCccceEEEecC----CCC
Confidence 3578999999999997 5999999888765555444 33333 3345555543 4444 23555421 122
Q ss_pred ccccc-ccCCceEEEeeccccCCCCCCc--HHHHHHHHHh-cCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhh
Q 045762 195 PHMFN-RRVGEALAVNAVNRLHRVPSNC--LGNLLAMIRD-QAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLD 270 (373)
Q Consensus 195 ~~~l~-~~~~EalaVn~~~~Lh~l~~~~--~~~~L~~ir~-L~P~vv~~~E~ea~~n~~~F~~RF~eaL~~Y~alfdsLe 270 (373)
.+.+. +.|.-.|+|-|- |+-+.+|. +..-|+.+.+ +.|.-..+-=.--.|....|+.|
T Consensus 200 ~~~l~~l~p~P~l~iVsG--L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr---------------- 261 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSG--LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIAR---------------- 261 (311)
T ss_pred HhHhhccCCCCCEEEEec--chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHH----------------
Confidence 22221 344446666554 57777653 4555665544 88886666544356665333333
Q ss_pred hcCCCCcHHHHHHHHHHhhHHHHHhhhh--cCCcccccccchhHHHHHHhcCCCccc
Q 045762 271 ATFPPDSAQRAKVEQYIFAPEIRNIVAC--EGGERTARHERLEKWRKIMEGKGFRGV 325 (373)
Q Consensus 271 a~~~~~~~~R~~iE~~~l~~eI~niVa~--eG~~R~eRhe~~~~W~~r~~~aGF~~~ 325 (373)
++.. +|.+.+=|+-+.+.=.+..+.|||+.+
T Consensus 262 ------------------------~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 262 ------------------------VLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred ------------------------HHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 2221 456666676666777777889999743
No 88
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=53.69 E-value=1.5e+02 Score=28.91 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=61.4
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcCcccc
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~~~~l 198 (373)
.-+|+|++.|.|. +--.||.+ + -+++||+.+...++.+.++. +..|++ .+|.. .+.+++... .
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~~--~D~~~~~~~-~ 237 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAEAIACAKQSA----AELGLTNVQFQA--LDSTQFATA-Q 237 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEEE--cCHHHHHHh-c
Confidence 3589999999986 33445543 2 37999999988887776554 445553 55543 333332211 0
Q ss_pred cccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeec
Q 045762 199 NRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQE 243 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~e 243 (373)
...-+.+++|=. +- .--+.+++.+.+++|+-++.+.-+
T Consensus 238 -~~~~D~Vv~dPP----r~--G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 238 -GEVPDLVLVNPP----RR--GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred -CCCCeEEEECCC----CC--CccHHHHHHHHHcCCCeEEEEECC
Confidence 112367777722 11 113567788888999988877543
No 89
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=52.79 E-value=91 Score=32.34 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcC
Q 045762 135 PAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLK 194 (373)
Q Consensus 135 p~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~ 194 (373)
|.||++|.+++..-|-=.|+-++.+.+.++.++....+.++..|.+++|....+.-+.++
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~ 73 (437)
T cd05298 14 PGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFT 73 (437)
T ss_pred HHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhC
Confidence 588999999875445445666677778888899999999999999999988655444443
No 90
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=52.56 E-value=27 Score=30.78 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=63.6
Q ss_pred hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEe
Q 045762 107 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHP 185 (373)
Q Consensus 107 aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~ 185 (373)
+-..+++.+...+.=+|+|+|.|.|.- =-.++.+ -|..++|+++.+...++.+.+.+ +..++. .++..
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~---~~~~~v~~vDi~~~a~~~a~~n~----~~n~~~~v~~~~ 87 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKR---GPDAKVTAVDINPDALELAKRNA----ERNGLENVEVVQ 87 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHT---STCEEEEEEESBHHHHHHHHHHH----HHTTCTTEEEEE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHh---CCCCEEEEEcCCHHHHHHHHHHH----HhcCcccccccc
Confidence 445667777665667799999999852 2233433 26788999999988887776654 445555 44432
Q ss_pred cCCCccCcCcccccccCCceEEEeeccccCCCCCC---cHHHHHHH-HHhcCCcEEEE
Q 045762 186 VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSN---CLGNLLAM-IRDQAPNIVTI 239 (373)
Q Consensus 186 v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~---~~~~~L~~-ir~L~P~vv~~ 239 (373)
.+-.+.+. ...=+.++.|=. +|.-.++ ....+++. -+-|+|.-..+
T Consensus 88 -~d~~~~~~-----~~~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 88 -SDLFEALP-----DGKFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp -SSTTTTCC-----TTCEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -cccccccc-----ccceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 11112221 112256677755 2333221 23455544 46699996553
No 91
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=51.86 E-value=97 Score=28.78 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=68.0
Q ss_pred HHHh-hhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 110 AIFE-AFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 110 aIle-A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
++|. ++....-=+++|.|.+.|. |=+.||.|. =++|+++-+...++.+.+||.+.+ +| +|...
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~----lT~~LA~rC-----d~LlavDis~~Al~~Ar~Rl~~~~---~V--~~~~~-- 96 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGV----LTERLAPRC-----DRLLAVDISPRALARARERLAGLP---HV--EWIQA-- 96 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSH----HHHHHGGGE-----EEEEEEES-HHHHHHHHHHTTT-S---SE--EEEES--
T ss_pred HHHHHhcCccccceeEecCCCccH----HHHHHHHhh-----CceEEEeCCHHHHHHHHHhcCCCC---Ce--EEEEC--
Confidence 4454 5777777889999999884 788898774 489999999999999999998764 33 44431
Q ss_pred CccCcCcccccccCCceEEEeeccccCCCCC-CcHHHHHHHH-HhcCCcEEEEEee
Q 045762 189 QLEDLKPHMFNRRVGEALAVNAVNRLHRVPS-NCLGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 189 ~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~-~~~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
++.+..|. ..=+-+++.- -+|.|.+ +.+..+++.+ .+|.|.-..++-.
T Consensus 97 dvp~~~P~----~~FDLIV~SE--VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 97 DVPEFWPE----GRFDLIVLSE--VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -TTT---S----S-EEEEEEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCCC----CCeeEEEEeh--HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11111110 0112333332 3577764 4567776665 7799997777643
No 92
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=51.21 E-value=1e+02 Score=31.67 Aligned_cols=155 Identities=18% Similarity=0.163 Sum_probs=86.2
Q ss_pred hhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcC--------CCCCCeEEEEeecCCh---hHHHHHHHHH
Q 045762 102 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAAR--------PGGAPFLRITGVGATI---ESAKETGRCL 170 (373)
Q Consensus 102 fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r--------~~gpp~lrIT~i~~~~---~~l~~tg~rL 170 (373)
|+-+.+|...-. ..+|-|||.|+||--==|+=-=+|+.- .-.|++...-|.-+|. ...=.--.||
T Consensus 89 Lt~~LaN~~l~r----G~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~~~~~~i~~v~rL 164 (398)
T COG1341 89 LTTYLANKLLAR----GRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQGFPGRYIAGVARL 164 (398)
T ss_pred HHHHHHHHHhhc----CceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccCCCCChHHHHHHHHHH
Confidence 455667765432 345999999999653222111122210 1134444554444443 2333345567
Q ss_pred HHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeecCCCCCCc
Q 045762 171 TELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHNGPY 250 (373)
Q Consensus 171 ~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ea~~n~~~ 250 (373)
.++|+.. -+.++||+.-..+=. ..++--...|...+|..++..|.+ |..+
T Consensus 165 ~~~a~~~-------------------------~~~ilIdT~GWi~G~--~g~elk~~li~~ikP~~Ii~l~~~---~~~~ 214 (398)
T COG1341 165 VDLAKKE-------------------------ADFILIDTDGWIKGW--GGLELKRALIDAIKPDLIIALERA---NELS 214 (398)
T ss_pred HHHhhcc-------------------------CCEEEEcCCCceeCc--hHHHHHHHHHhhcCCCEEEEeccc---cccc
Confidence 7777652 246688887543322 346777788999999999999886 3334
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHhhHHHHH
Q 045762 251 FLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRN 294 (373)
Q Consensus 251 F~~RF~eaL~~Y~alfdsLea~~~~~~~~R~~iE~~~l~~eI~n 294 (373)
++.+=.++..| ...-+...+++-.||...=.+-+++.+.+
T Consensus 215 ~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 215 PLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred hhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 33333444444 33334455666677765544445555554
No 93
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=50.15 E-value=2.1e+02 Score=29.50 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.1
Q ss_pred CCcEEEeeCCEEEE
Q 045762 345 DGYRLTEDNGCLLL 358 (373)
Q Consensus 345 ~g~~v~~~~g~l~L 358 (373)
.||.+....|.+.+
T Consensus 299 ~~~~~~~~~~~l~~ 312 (436)
T PRK10660 299 GAFEIRRYQSQLWL 312 (436)
T ss_pred CCEEEEEECCEEEE
Confidence 47788887777655
No 94
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=49.92 E-value=88 Score=32.27 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=45.1
Q ss_pred c-HHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 045762 134 W-PAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQ 189 (373)
Q Consensus 134 W-p~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~ 189 (373)
| |.||++|.+++..-|--.|+-++.+.+.++.++....+.++..|.+++|....+.
T Consensus 12 ~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~ 68 (425)
T cd05197 12 FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDL 68 (425)
T ss_pred hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCH
Confidence 5 5889999999866565666777777888888999999999999999998875443
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=49.27 E-value=42 Score=31.54 Aligned_cols=48 Identities=27% Similarity=0.252 Sum_probs=33.8
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
..+..+|+|+|.|.|.= ...|+... |..++||++.+...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~----~~~la~~~---~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAI----ALALAKER---PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHHH----HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 34567899999999953 33333322 45789999998888877777655
No 96
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=48.70 E-value=45 Score=32.09 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=35.6
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC--eEEE
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP--FEFH 184 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~--fef~ 184 (373)
.+|+|+|.|.|.--. .|+... |..++||++.+...++.+.++. +..++. .+|.
T Consensus 116 ~~vLDlG~GsG~i~l----~la~~~---~~~~v~avDis~~al~~a~~n~----~~~~~~~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGCIAL----ALAYEF---PNAEVIAVDISPDALAVAEENA----EKNQLEHRVEFI 170 (284)
T ss_pred CEEEEEeccHhHHHH----HHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCCCcEEEE
Confidence 589999999995333 344332 3468999999888887777664 344553 4444
No 97
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=47.47 E-value=43 Score=22.84 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=24.5
Q ss_pred ceEEEeeccccCCCC-CCcHHHHHHHHHhcCCcEEEEE
Q 045762 204 EALAVNAVNRLHRVP-SNCLGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 204 EalaVn~~~~Lh~l~-~~~~~~~L~~ir~L~P~vv~~~ 240 (373)
|.+-|||...--++. -.+.+.+++.++.++|+-+++|
T Consensus 1 e~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 456678754333354 2347899999999999998887
No 98
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=46.06 E-value=30 Score=31.58 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=66.5
Q ss_pred eeEEEecCCC---CCCccHHHHHHHhcCCCCCCeEEE------EeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCc
Q 045762 120 RVHVIDLDIL---QGYQWPAFMQALAARPGGAPFLRI------TGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQL 190 (373)
Q Consensus 120 ~VHIIDf~i~---~G~QWp~LiqaLa~r~~gpp~lrI------T~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~ 190 (373)
+|+||.|=-+ -+..=-++|.+|+.+ .+.+ |||+. .+....++.-+.+|+++.+..|-|.++..+-
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~-dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINA-DDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEEC-ccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 7999998533 344556899999654 2555 77764 3447788889999999999888766643222
Q ss_pred cCcCcccccccC-Cce-EEEeeccccCCCC-----CCcHHHHHHHHHhc
Q 045762 191 EDLKPHMFNRRV-GEA-LAVNAVNRLHRVP-----SNCLGNLLAMIRDQ 232 (373)
Q Consensus 191 e~l~~~~l~~~~-~Ea-laVn~~~~Lh~l~-----~~~~~~~L~~ir~L 232 (373)
+.......++.. .++ ++||-...+.... ++..+.++..|+++
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 322222344433 366 6888765543332 23355667666654
No 99
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=46.04 E-value=51 Score=29.29 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=32.2
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTEL 173 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~f 173 (373)
.-.|+|+|.|.|. +--.++.+ + |..++|+|+.+...++.+.++..++
T Consensus 32 ~~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~s~~~~~~a~~n~~~~ 78 (187)
T PRK08287 32 AKHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIERNPDALRLIKENRQRF 78 (187)
T ss_pred CCEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEECCHHHHHHHHHHHHHh
Confidence 3479999999884 33334443 2 4678999999888777776655443
No 100
>PRK04148 hypothetical protein; Provisional
Probab=45.70 E-value=92 Score=26.97 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChh
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIE 161 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~ 161 (373)
|.+.....+.-.|+|.|+|.|.. +-+.|++. | ..+|+|+.+..
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~---vA~~L~~~-G----~~ViaIDi~~~ 50 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFK---VAKKLKES-G----FDVIVIDINEK 50 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHH---HHHHHHHC-C----CEEEEEECCHH
Confidence 44444444456799999998763 34455532 2 47888876543
No 101
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=45.24 E-value=86 Score=29.69 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
|++++.-.+.=+|+|+|.|.|. |...|+.+. -++|+|+.+...++.+.+++.
T Consensus 21 iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 21 IVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred HHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCHHHHHHHHHHhc
Confidence 3444333344579999999886 555666652 279999998877776666553
No 102
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=45.06 E-value=3.6e+02 Score=27.56 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=47.3
Q ss_pred HhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 106 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 106 taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
.+-+.+..++.-.+.-.|+|+|.+.|.--..+.+.+ + .-+|++++.+...++.+.+++. .+|++.++.
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~---~----~~~v~a~D~~~~~l~~~~~n~~----r~g~~~~v~ 292 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELA---P----QAQVVALDIHEHRLKRVYENLK----RLGLTIKAE 292 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc---C----CCeEEEEeCCHHHHHHHHHHHH----HcCCCeEEE
Confidence 345666777765555689999999997665555443 1 3489999999888888876664 467764443
No 103
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=44.93 E-value=2.6e+02 Score=26.57 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=67.8
Q ss_pred CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEe-cCCCccCcCcc
Q 045762 118 EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPH 196 (373)
Q Consensus 118 ~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~-v~~~~e~l~~~ 196 (373)
..++-++..|+|.|.-.+-+ .-.|--+||.|+|+.. +++.... .+|+. .|.+|.- |..+.|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy--------~~~p~~svt~lDpn~~-mee~~~k--s~~E~--k~~~~~~fvva~ge~l~~- 140 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY--------PWKPINSVTCLDPNEK-MEEIADK--SAAEK--KPLQVERFVVADGENLPQ- 140 (252)
T ss_pred cCccceEEecccCCCCcccc--------cCCCCceEEEeCCcHH-HHHHHHH--HHhhc--cCcceEEEEeechhcCcc-
Confidence 45899999999988543211 1126789999998653 3333222 22333 5666663 5556665531
Q ss_pred cccccCCceEEEeeccccCCCCCCcHHHHHHHHHh-cCCc-EEEEEeecCCCCCCchHHHHHH
Q 045762 197 MFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRD-QAPN-IVTIVEQEASHNGPYFLGRFLE 257 (373)
Q Consensus 197 ~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~-L~P~-vv~~~E~ea~~n~~~F~~RF~e 257 (373)
+.++-.=+|-|.|-|=.. . +....|+.+|+ |+|. ++++.|+-+.-. +|..|+.+
T Consensus 141 ---l~d~s~DtVV~TlvLCSv-e-~~~k~L~e~~rlLRpgG~iifiEHva~~y--~~~n~i~q 196 (252)
T KOG4300|consen 141 ---LADGSYDTVVCTLVLCSV-E-DPVKQLNEVRRLLRPGGRIIFIEHVAGEY--GFWNRILQ 196 (252)
T ss_pred ---cccCCeeeEEEEEEEecc-C-CHHHHHHHHHHhcCCCcEEEEEecccccc--hHHHHHHH
Confidence 233323334444444332 2 24567888765 8998 555668766544 46666655
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=44.53 E-value=55 Score=30.78 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=40.6
Q ss_pred CcchhhHHHhhHHHHhhhcc--CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 98 PYVKFAHFTANQAIFEAFEA--EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 98 P~~~fa~~taNqaIleA~~g--~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
||..-.|-+ .+..++++.. .+.-.|+|+|.|.|. |.-.++.. |+. +++||+.+...++.+.+++.
T Consensus 97 afgtg~h~t-t~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 97 AFGTGTHPT-TRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred ccCCCCCHH-HHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH
Confidence 344333444 4456666652 244579999999884 33344433 333 59999999888888777643
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=44.36 E-value=40 Score=33.21 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=43.7
Q ss_pred hhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 107 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 107 aNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
.-+.+++-+.....-+|+|||.|+|.== =.|+.+ .|..+||-++.+...++...+.|.
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg----~~la~~---~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLG----LVLAKK---SPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHH----HHHHHh---CCCCeEEEEecCHHHHHHHHHhHH
Confidence 4678999998876669999999988622 233433 268999999998888877776664
No 106
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=43.82 E-value=37 Score=33.32 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
+.+++++.-.+.-.+||...|.|..=-.+++.+ ||.-+++||+.+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 346666654444479999999998766665544 4567999999999999999998865
No 107
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=43.69 E-value=36 Score=32.98 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=32.7
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
||+|+|.|.|..=.+|.... |..+|+|++-+.+.++-+.++...
T Consensus 113 ~ilDlGTGSG~iai~la~~~-------~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-------PDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-------cCCeEEEEECCHHHHHHHHHHHHH
Confidence 99999999997543333222 468999999999888888766443
No 108
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=42.83 E-value=91 Score=30.44 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=35.1
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
.|+++....+.=.|+|+|.|.|. |-..|+.+. -++++|+.+.+.++.+.+++..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECCHHHHHHHHHHHHh
Confidence 34444443334479999999886 444555442 2689999988877777766644
No 109
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=42.77 E-value=72 Score=30.78 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=62.3
Q ss_pred HHHhhHHHHhhhcc--CceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCe
Q 045762 104 HFTANQAIFEAFEA--EERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPF 181 (373)
Q Consensus 104 ~~taNqaIleA~~g--~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~f 181 (373)
+..+.+..++.++. .+.-.|+|+|.|.|. |..+++.. |+ -+++||+.+...++.+.+++. ..++..
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~--~~V~avDid~~al~~a~~n~~----~n~~~~ 209 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA--AKVVGIDIDPLAVESARKNAE----LNQVSD 209 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHH----HcCCCc
Confidence 44556666666652 234589999999985 33444443 22 389999999888888776653 344543
Q ss_pred EEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCcEEEEE
Q 045762 182 EFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPNIVTIV 240 (373)
Q Consensus 182 ef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~vv~~~ 240 (373)
.+.......... . -..=+.|+.|.. .+.+..++..+ +.|+|.-.++.
T Consensus 210 ~~~~~~~~~~~~----~-~~~fDlVvan~~-------~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 210 RLQVKLIYLEQP----I-EGKADVIVANIL-------AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ceEEEecccccc----c-CCCceEEEEecC-------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 333221111110 0 012245655542 22234455444 77899855554
No 110
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=41.87 E-value=61 Score=30.50 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHH
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCL 170 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL 170 (373)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.+.+.++.+.+++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHHh
Confidence 455666655555689999999887 666666654 2 3999998887666655444
No 111
>PLN02366 spermidine synthase
Probab=41.64 E-value=2.8e+02 Score=27.27 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=58.8
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhc-CCCeEEEecCCCc-cCcCccccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSL-HVPFEFHPVGEQL-EDLKPHMFN 199 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~l-gv~fef~~v~~~~-e~l~~~~l~ 199 (373)
+|+|+|.|.|. +...++.. |+.-+||.|+.+.+.++.+.+.+.+....+ +=.+++.. .+. +-+.. ..
T Consensus 94 rVLiIGgG~G~----~~rellk~---~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~--~Da~~~l~~--~~ 162 (308)
T PLN02366 94 KVLVVGGGDGG----VLREIARH---SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI--GDGVEFLKN--AP 162 (308)
T ss_pred eEEEEcCCccH----HHHHHHhC---CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE--ChHHHHHhh--cc
Confidence 57888888876 56666654 345799999988887777777665542211 01122221 110 00110 00
Q ss_pred ccCCceEEEeeccccCCCCCCc--HHHHHHHH-HhcCCcEEEEEee
Q 045762 200 RRVGEALAVNAVNRLHRVPSNC--LGNLLAMI-RDQAPNIVTIVEQ 242 (373)
Q Consensus 200 ~~~~EalaVn~~~~Lh~l~~~~--~~~~L~~i-r~L~P~vv~~~E~ 242 (373)
-..-+.+++.+... .-.... -..|++.+ +.|+|.-++++-.
T Consensus 163 ~~~yDvIi~D~~dp--~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 163 EGTYDAIIVDSSDP--VGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCCEEEEcCCCC--CCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 11236777765321 111111 24677776 6799998776543
No 112
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=41.16 E-value=41 Score=33.02 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHhhhccC---ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 110 AIFEAFEAE---ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 110 aIleA~~g~---~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
+++|++... +.-||.|.|.|.|.==.+++..| |.-|+|+|+.+...+.-++++-.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHHHHHHHHHHHH
Confidence 456666543 34589999999998655555544 47899999998888877776533
No 113
>PRK03646 dadX alanine racemase; Reviewed
Probab=39.44 E-value=46 Score=33.33 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=33.9
Q ss_pred ceeEE-EecCCC-CCCc---cHHHHHHHhcCCCCCCeEEEEeecCCh---hHHHHHHHHHHHHHh
Q 045762 119 ERVHV-IDLDIL-QGYQ---WPAFMQALAARPGGAPFLRITGVGATI---ESAKETGRCLTELAH 175 (373)
Q Consensus 119 ~~VHI-IDf~i~-~G~Q---Wp~LiqaLa~r~~gpp~lrIT~i~~~~---~~l~~tg~rL~~fA~ 175 (373)
-+||| ||-|++ .|.. ++.+++.+.. .|.|+++||.+.- +....+.+.+.+|-+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 37999 999987 7775 5566666543 3579999996542 222235556666644
No 114
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=38.76 E-value=1e+02 Score=28.06 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=47.2
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCC
Q 045762 131 GYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQ 189 (373)
Q Consensus 131 G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~ 189 (373)
+..||-++..+..+.+.-+.-.|+-.+.+.+.|+.++.-..++++..|.+++|....+.
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~ 67 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDR 67 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSH
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 46899888877777665566677778888899999999999999999999999875433
No 115
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=37.90 E-value=19 Score=27.38 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.7
Q ss_pred cchhHHHHHHhcCCCccccCC
Q 045762 308 ERLEKWRKIMEGKGFRGVPLS 328 (373)
Q Consensus 308 e~~~~W~~r~~~aGF~~~~ls 328 (373)
|+..+-+++|+++|++|+.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 455677899999999999986
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=37.04 E-value=60 Score=31.67 Aligned_cols=72 Identities=19% Similarity=0.056 Sum_probs=46.3
Q ss_pred HHHHHhhCCcchhhHHHhhHHHHhhh--ccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHH
Q 045762 90 YQIVYQACPYVKFAHFTANQAIFEAF--EAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETG 167 (373)
Q Consensus 90 ~~~~~~~~P~~~fa~~taNqaIleA~--~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg 167 (373)
+..|..-. +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.+.+ ..+||||+.+...++.+.
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEFARIGK 105 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHHHHHHH
Confidence 45555555 55667777777777443 23334579999999994 3334444422 268999998887666555
Q ss_pred HH
Q 045762 168 RC 169 (373)
Q Consensus 168 ~r 169 (373)
++
T Consensus 106 ~n 107 (279)
T PHA03411 106 RL 107 (279)
T ss_pred Hh
Confidence 43
No 117
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=36.89 E-value=89 Score=33.94 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred cCCCCC-CccHHHHHHHhcC---CCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcc-cccc
Q 045762 126 LDILQG-YQWPAFMQALAAR---PGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPH-MFNR 200 (373)
Q Consensus 126 f~i~~G-~QWp~LiqaLa~r---~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~-~l~~ 200 (373)
+|+..| -||-+|.++|..+ .++.|.+.|+......+.. |.+-|.+.|+.-|++-+|.. .++++.-+ .=.+
T Consensus 353 ~g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eED~--T~~YL~d~a~qAG~~t~~~~---~iedL~~d~~G~~ 427 (619)
T PRK10507 353 GYKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENY--HAQFMQQALHQAGFETKILR---GLDELRWDAAGQL 427 (619)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCcHH--HHHHHHHHHHHCCCceEEec---CHHHeEECCCCcE
Confidence 344444 6888888887753 3344789999887665544 66779999999999988873 12333221 1113
Q ss_pred cCCceEEEeeccccCCC
Q 045762 201 RVGEALAVNAVNRLHRV 217 (373)
Q Consensus 201 ~~~EalaVn~~~~Lh~l 217 (373)
-+++-..|+++|.|+..
T Consensus 428 ~D~dg~~I~~vfKlyPW 444 (619)
T PRK10507 428 IDGDGRLVNCVWKTWAW 444 (619)
T ss_pred ECCCCCEeeeeeecccH
Confidence 34455668888877644
No 118
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=36.62 E-value=35 Score=32.82 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=18.1
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCC
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARP 145 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~ 145 (373)
|.+.+||||+ +.+ +. .+|+.+++..
T Consensus 51 Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 51 GVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred CCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 8899999999 545 66 5566666543
No 119
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=36.62 E-value=75 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=34.4
Q ss_pred CCCeEEEEeecCCh----hHHHHHHHHHHHHHhhcCCCeEEEe
Q 045762 147 GAPFLRITGVGATI----ESAKETGRCLTELAHSLHVPFEFHP 185 (373)
Q Consensus 147 gpp~lrIT~i~~~~----~~l~~tg~rL~~fA~~lgv~fef~~ 185 (373)
|+|..|||..+++. +.|+++.+.+.+-++.+|....|+.
T Consensus 219 gaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 219 GAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred cCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 78999999888774 4699999999999999999999985
No 120
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=35.70 E-value=75 Score=32.51 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCc
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQL 190 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~ 190 (373)
+++.+.+.+.-.++|+|.|.|. ++-.+|.+. |...++||+.....+..+.++.. ..|++= +..+..+.
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~----~ll~lA~~~---P~~~~iGIEI~~~~i~~a~~ka~----~~gL~N-V~~i~~DA 181 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGR----HLLYQAKNN---PNKLFIGIEIHTPSIEQVLKQIE----LLNLKN-LLIINYDA 181 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccH----HHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHH----HcCCCc-EEEEECCH
Confidence 5566667666789999999994 556666653 56799999988877777766653 344421 22222333
Q ss_pred cCcCcccccccCC--ceEEEeeccccCCCCCC--cHHHHHHHH-HhcCCcEEEEEeec
Q 045762 191 EDLKPHMFNRRVG--EALAVNAVNRLHRVPSN--CLGNLLAMI-RDQAPNIVTIVEQE 243 (373)
Q Consensus 191 e~l~~~~l~~~~~--EalaVn~~~~Lh~l~~~--~~~~~L~~i-r~L~P~vv~~~E~e 243 (373)
..+.. . +.++ +.+.+|+..--++-... ....+|+.+ |-|+|.-.+..=.|
T Consensus 182 ~~ll~-~--~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 182 RLLLE-L--LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred HHhhh-h--CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 22211 1 1222 45555643210000000 125677666 66899866555443
No 121
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=35.16 E-value=77 Score=30.61 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=33.1
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
..+|+|+|.|.|. +.-.|+.+. |..++||++.+...++.+.++..
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3589999999986 444455442 45699999999888888776643
No 122
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=34.45 E-value=1.1e+02 Score=30.44 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
..+.+.|+|+|.|.|.=-|.| +.+. +..++||++-+...++.+.+.+.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lL----a~~~---~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLI----GVHE---YGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CCCCceEEEecCCccHHHHHH----HhhC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 345799999999988544433 4333 35689999998888888776654
No 123
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=34.36 E-value=3.2e+02 Score=28.09 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEeecCC-hhHHHHHHHHHHHHHhhcCCCeEEEecCC
Q 045762 135 PAFMQALAARPGGAPFLRITGVGAT-IESAKETGRCLTELAHSLHVPFEFHPVGE 188 (373)
Q Consensus 135 p~LiqaLa~r~~gpp~lrIT~i~~~-~~~l~~tg~rL~~fA~~lgv~fef~~v~~ 188 (373)
|.||++|+++...-|-=.|+-++-+ .+.|+.++.-..+.++..|.+++|....+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d 68 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTD 68 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 5889999997654444445555555 78899999999999999999998887543
No 124
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=34.33 E-value=80 Score=28.63 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=44.9
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhcccCCCCChhhHHHHHHHHHHHHhHhc
Q 045762 8 LVHLLLACA-EAVAKEDFMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAA 62 (373)
Q Consensus 8 l~~lL~~cA-~Ai~~~~~~~A~~lL~~l~~~~s~~g~~~qRla~yF~~AL~~Rl~~ 62 (373)
+..+|+.+. ..+..++...|..++..+..+..|..+-..|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 345566655 7788899999999999999988877778899999999999765444
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=34.18 E-value=2.5e+02 Score=28.89 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=50.6
Q ss_pred hHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecC
Q 045762 108 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVG 187 (373)
Q Consensus 108 NqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~ 187 (373)
.+.+.+++.-.+.-+|+|+|.+.|.-=..+.+.+ + |.-+||+++.+...++.+.+++. .+|+.- +..+.
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~----~--~~~~v~avDi~~~~l~~~~~n~~----~~g~~~-v~~~~ 307 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL----K--NTGKVVALDIHEHKLKLIEENAK----RLGLTN-IETKA 307 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHh----C--CCCEEEEEeCCHHHHHHHHHHHH----HcCCCe-EEEEe
Confidence 3455556654444579999999886322222221 1 23489999999888877776654 456641 33333
Q ss_pred CCccCcCcccccccCCceEEEeec
Q 045762 188 EQLEDLKPHMFNRRVGEALAVNAV 211 (373)
Q Consensus 188 ~~~e~l~~~~l~~~~~EalaVn~~ 211 (373)
.+..++.. .+. ..-+.+.+|..
T Consensus 308 ~D~~~~~~-~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 308 LDARKVHE-KFA-EKFDKILVDAP 329 (444)
T ss_pred CCcccccc-hhc-ccCCEEEEcCC
Confidence 33333211 111 23467777753
No 126
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=33.95 E-value=98 Score=28.22 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
.+++++.-.+.-+|+|+|.|.|..= ..|+.+. ++.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a----~~la~~~--~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQA----AVLAEIV--GRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHH----HHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4556665455568999999888632 2344432 2345899999888877777766644
No 127
>PF14044 NETI: NETI protein
Probab=32.33 E-value=35 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred cccccchhHHHHHHhcCCCcccc
Q 045762 304 TARHERLEKWRKIMEGKGFRGVP 326 (373)
Q Consensus 304 ~eRhe~~~~W~~r~~~aGF~~~~ 326 (373)
++-+|+....-+||...||.|+.
T Consensus 4 V~enETI~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 4 VEENETISDCLARMKKEGYMPVR 26 (57)
T ss_pred ccCCCcHHHHHHHHHHcCCCcee
Confidence 45678999999999999999886
No 128
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=32.07 E-value=99 Score=22.72 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHhhHHHHHhhhhc
Q 045762 260 HYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACE 299 (373)
Q Consensus 260 ~~Y~alfdsLea~~~~~~~~R~~iE~~~l~~eI~niVa~e 299 (373)
..|..+++.|+ .+|.++.-|..+|. +-++-.+||..+
T Consensus 9 ~lY~~~L~~L~-~~P~~a~YR~~tE~--it~~Rl~iv~~~ 45 (57)
T PF04716_consen 9 SLYNKTLKALK-KIPEDAAYRQYTEA--ITKHRLKIVEEE 45 (57)
T ss_pred HHHHHHHHHHH-hCCCccHHHHHHHH--HHHHHHHHHHcc
Confidence 47999999998 68999999999999 456667777553
No 129
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=31.79 E-value=26 Score=35.42 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=10.0
Q ss_pred CceeEEEecCCC
Q 045762 118 EERVHVIDLDIL 129 (373)
Q Consensus 118 ~~~VHIIDf~i~ 129 (373)
+..|||||||+.
T Consensus 165 ~n~IhiiDFGmA 176 (449)
T KOG1165|consen 165 ANVIHIIDFGMA 176 (449)
T ss_pred CceEEEEeccch
Confidence 457999999985
No 130
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=31.63 E-value=1.1e+02 Score=27.74 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=35.4
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHH
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTEL 173 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~f 173 (373)
+++.+.-.+.-.|+|+|.|.|.... +|..+. + ++++|+.+.+.++.+.+++.+.
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 3445554555689999999887432 333332 1 6999998877777777666653
No 131
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=31.00 E-value=1.1e+02 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=36.1
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEE
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFH 184 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~ 184 (373)
+|+|+|.|.|..=. .|+.+. |..++||++.+.+.++.+.+++.+ .++..+|.
T Consensus 254 rVLDLGcGSG~Iai----aLA~~~---p~a~VtAVDiS~~ALe~AreNa~~----~g~rV~fi 305 (423)
T PRK14966 254 RVWDLGTGSGAVAV----TVALER---PDAFVRASDISPPALETARKNAAD----LGARVEFA 305 (423)
T ss_pred EEEEEeChhhHHHH----HHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCcEEEE
Confidence 79999999997433 333321 456899999998888888777643 45555543
No 132
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=30.82 E-value=1.7e+02 Score=27.47 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=39.8
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCC-eEEEecCCCccCcC
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVP-FEFHPVGEQLEDLK 194 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~-fef~~v~~~~e~l~ 194 (373)
..|++|+|-|-|. |.+.=+++. |.+++|-|++..- =-.-|...++.+|++ .++.. .+.|++.
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~K----k~~FL~~~~~eL~L~nv~i~~--~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGK----KIAFLREVKKELGLENVEIVH--GRAEEFG 130 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCch----HHHHHHHHHHHhCCCCeEEeh--hhHhhcc
Confidence 4799999887665 777766653 6788999987532 122345556677776 55543 4555554
No 133
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.91 E-value=4.9e+02 Score=26.45 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=57.0
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC-CeEEEecCCCccCcCccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV-PFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv-~fef~~v~~~~e~l~~~~l~ 199 (373)
=+|+|++.|.|.= --.||.+. -+++||+.+.+.++.+.+++. ..|+ ..+|. ..+.++.-+. +.
T Consensus 294 ~~vLDl~cG~G~~----sl~la~~~-----~~V~~vE~~~~av~~a~~n~~----~~~~~nv~~~--~~d~~~~l~~-~~ 357 (431)
T TIGR00479 294 ELVVDAYCGVGTF----TLPLAKQA-----KSVVGIEVVPESVEKAQQNAE----LNGIANVEFL--AGTLETVLPK-QP 357 (431)
T ss_pred CEEEEcCCCcCHH----HHHHHHhC-----CEEEEEEcCHHHHHHHHHHHH----HhCCCceEEE--eCCHHHHHHH-HH
Confidence 4799999998862 22245432 278999999888888777654 3344 23333 3333332111 11
Q ss_pred c--cCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEE
Q 045762 200 R--RVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 200 ~--~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~ 240 (373)
. ..-+.++++-. +. .-...+++.+.+++|+-++.+
T Consensus 358 ~~~~~~D~vi~dPP----r~--G~~~~~l~~l~~l~~~~ivyv 394 (431)
T TIGR00479 358 WAGQIPDVLLLDPP----RK--GCAAEVLRTIIELKPERIVYV 394 (431)
T ss_pred hcCCCCCEEEECcC----CC--CCCHHHHHHHHhcCCCEEEEE
Confidence 1 11256666533 11 113678888889999977766
No 134
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=29.72 E-value=1.1e+02 Score=28.01 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=36.1
Q ss_pred HHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 111 IFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 111 IleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
+++++.-.+.=+|+|+|.|.|..= ..|+...+ +.-++|+|+.+.+.++.+.+++.+
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t----~~la~~~~--~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHA----AVVAEIVG--KSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHH----HHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 444444334457999999888732 22232221 345899999998888887777764
No 135
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=29.69 E-value=57 Score=32.73 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCceEEEeeccccCCCCCCcHHHHHHHH-HhcCCc-EEEEEeecCC
Q 045762 202 VGEALAVNAVNRLHRVPSNCLGNLLAMI-RDQAPN-IVTIVEQEAS 245 (373)
Q Consensus 202 ~~EalaVn~~~~Lh~l~~~~~~~~L~~i-r~L~P~-vv~~~E~ea~ 245 (373)
+++++.+-|+ |||+.|++.-.+|++. ++|.|+ .++++|.-..
T Consensus 236 ~~daI~mkWi--LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 236 KGDAIWMKWI--LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred CcCeEEEEee--cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 4565555555 7999998888888886 678998 5555576333
No 136
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=28.27 E-value=1.2e+02 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=32.8
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
.+|+|+|.|.|. +.-.|+.+. |..++|+++.+...++.+.+++.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---PDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 579999999996 334445432 56899999999888887776653
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=28.21 E-value=77 Score=30.25 Aligned_cols=46 Identities=22% Similarity=-0.068 Sum_probs=31.6
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRC 169 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~r 169 (373)
...|+|+|.|.|. |.-+++.+-..++..+||+|+-+...++.+.+.
T Consensus 50 ~grVLDlG~GSG~----Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGG----LSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHH----HHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 4689999998884 444455443233467999999888777666644
No 138
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=27.57 E-value=1.4e+02 Score=23.70 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=56.2
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCC--CeEEEecCCCccCcCcccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHV--PFEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv--~fef~~v~~~~e~l~~~~l 198 (373)
.+|+|.|.|.|.- ++..+.. + ..+++|++-+...++-+..++.. .++ +++|.. .++.++. ..+
T Consensus 2 ~~vlD~~~G~G~~---~~~~~~~---~--~~~~~gvdi~~~~~~~a~~~~~~----~~~~~~~~~~~--~D~~~~~-~~~ 66 (117)
T PF13659_consen 2 DRVLDPGCGSGTF---LLAALRR---G--AARVTGVDIDPEAVELARRNLPR----NGLDDRVEVIV--GDARDLP-EPL 66 (117)
T ss_dssp EEEEEETSTTCHH---HHHHHHH---C--TCEEEEEESSHHHHHHHHHHCHH----CTTTTTEEEEE--SHHHHHH-HTC
T ss_pred CEEEEcCcchHHH---HHHHHHH---C--CCeEEEEEECHHHHHHHHHHHHH----ccCCceEEEEE--Cchhhch-hhc
Confidence 4799999999972 2333322 2 57899999988877776655544 344 344432 3333322 111
Q ss_pred cccCCceEEEeeccccCCCC----CCcHHHHHHH-HHhcCCcEEEEE
Q 045762 199 NRRVGEALAVNAVNRLHRVP----SNCLGNLLAM-IRDQAPNIVTIV 240 (373)
Q Consensus 199 ~~~~~EalaVn~~~~Lh~l~----~~~~~~~L~~-ir~L~P~vv~~~ 240 (373)
.-..=+.++.|-.+.-+.-. .+....+++. .+-|+|.-++.+
T Consensus 67 ~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 22333677777776433221 1123455544 466888855543
No 139
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=27.19 E-value=2e+02 Score=29.98 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHhhhccCceeEEEecCCCCCCcc--HHHHHHHhcCC-CC-CCeEEE----EeecCCh--hHHHHHHHHHHHHHhhcC
Q 045762 109 QAIFEAFEAEERVHVIDLDILQGYQW--PAFMQALAARP-GG-APFLRI----TGVGATI--ESAKETGRCLTELAHSLH 178 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i~~G~QW--p~LiqaLa~r~-~g-pp~lrI----T~i~~~~--~~l~~tg~rL~~fA~~lg 178 (373)
..|-+.......-+||=|+.|-=..= --..++|...| .+ .|.+.+ |++..|. +.++.+-+++.++|+..|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555555555667888877622111 11124554333 22 245666 5555443 467788889999999999
Q ss_pred CCeEEEecC
Q 045762 179 VPFEFHPVG 187 (373)
Q Consensus 179 v~fef~~v~ 187 (373)
+|+.++.+.
T Consensus 83 lpi~~~~v~ 91 (447)
T TIGR03183 83 LPIEPHRLT 91 (447)
T ss_pred CCeEEEecC
Confidence 999987753
No 140
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=27.06 E-value=2.6e+02 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=24.0
Q ss_pred eeEE-EecCCC-CCCcc---HHHHHHHhcCCCCCCeEEEEee
Q 045762 120 RVHV-IDLDIL-QGYQW---PAFMQALAARPGGAPFLRITGV 156 (373)
Q Consensus 120 ~VHI-IDf~i~-~G~QW---p~LiqaLa~r~~gpp~lrIT~i 156 (373)
+||| ||-|++ .|..+ ..+++.+. .-|.|++.||
T Consensus 118 ~vhlkvDtGm~R~G~~~~e~~~~~~~i~----~~~~l~~~Gi 155 (353)
T cd06815 118 KIILMVDLGDLREGVLPEDLLDFVEEIL----KLPGIELVGI 155 (353)
T ss_pred ceEEEEecCCCccccCHHHHHHHHHHHh----CCCCcEEEec
Confidence 6898 899987 78764 45555553 2367999999
No 141
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=26.66 E-value=2e+02 Score=25.80 Aligned_cols=48 Identities=10% Similarity=0.026 Sum_probs=31.8
Q ss_pred ceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 119 ERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 119 ~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
+.-.|+|+|.|.|. +--.++.+. +|.-++++|+.+...++.+.+++.+
T Consensus 40 ~~~~vlDlG~GtG~----~s~~~a~~~--~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 40 KGDMILDIGCGTGS----VTVEASLLV--GETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CcCEEEEeCCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 34589999999883 222233222 1345899999988888777766544
No 142
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.07 E-value=3.4e+02 Score=24.00 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHhcCCcEEEEE
Q 045762 220 NCLGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 220 ~~~~~~L~~ir~L~P~vv~~~ 240 (373)
+..+.+++.|++.+|++|+++
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEE
Confidence 346788889999999988886
No 143
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=25.71 E-value=1.3e+02 Score=27.93 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=32.5
Q ss_pred eeEE-EecC--CC-CCCccHHHHHHHhcCCCCCCeEEEEeecCC------hhHHHHHHHHHHHHHhhc
Q 045762 120 RVHV-IDLD--IL-QGYQWPAFMQALAARPGGAPFLRITGVGAT------IESAKETGRCLTELAHSL 177 (373)
Q Consensus 120 ~VHI-IDf~--i~-~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~------~~~l~~tg~rL~~fA~~l 177 (373)
.||| ||-| +. .|+.+..+. .++.+-..-|.|++.|+-.- .+..++.-+.+.++.+.+
T Consensus 122 ~V~l~vdtg~gm~R~G~~~~e~~-~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l 188 (229)
T TIGR00044 122 NVLLQINISDEESKSGIQPEELL-ELAIQIEELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQI 188 (229)
T ss_pred eEEEEEECCCCCCCCCCCHHHHH-HHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6888 8984 44 787643322 23333334578999998531 234444555555555544
No 144
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.44 E-value=53 Score=30.56 Aligned_cols=125 Identities=6% Similarity=-0.023 Sum_probs=65.7
Q ss_pred hhhHHHhhHHHHhhhccCc--eeEEEecCCCCCCccHHHHHHH---hcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHh
Q 045762 101 KFAHFTANQAIFEAFEAEE--RVHVIDLDILQGYQWPAFMQAL---AARPGGAPFLRITGVGATIESAKETGRCLTELAH 175 (373)
Q Consensus 101 ~fa~~taNqaIleA~~g~~--~VHIIDf~i~~G~QWp~LiqaL---a~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~ 175 (373)
.|+|-+.|...-.-+-|.+ .+||||+.-. |..|..|+ +...+| +|--|++... ..+-..++|+
T Consensus 21 H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT----~~~L~~A~~~i~~~~~~----~ILfVgTk~~----~~~~v~k~A~ 88 (204)
T PRK04020 21 HIGTQQKTKDMERFIYRVRPDGLYVLDVRKT----DERIRIAAKFLSRYEPE----KILVVSSRQY----GQKPVQKFAE 88 (204)
T ss_pred EcCCCcCCCCCcccEeeecCCCCEEEcHHHH----HHHHHHHHHHHHHhcCC----eEEEEeCCHH----HHHHHHHHHH
Confidence 4566666665545555654 6999999765 66666654 333222 4666666542 3455778999
Q ss_pred hcCCCeEEEe-cCCCccCcCcccccccCCceEEEeeccccCCCCCCcHHHHHHHHHhcCCcEEEEEeecCCCC
Q 045762 176 SLHVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNCLGNLLAMIRDQAPNIVTIVEQEASHN 247 (373)
Q Consensus 176 ~lgv~fef~~-v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~L~~ir~L~P~vv~~~E~ea~~n 247 (373)
..|-.+-.+- +-..+-+..... ...|+=.+++| . ..+ ...++-.+.++=-++-+|+-|+|.+
T Consensus 89 ~~g~~~v~~RWlgG~LTN~~~~~-~~~Pdliiv~d-p------~~~--~~AI~EA~kl~IP~IaivDTn~dp~ 151 (204)
T PRK04020 89 VVGAKAITGRFIPGTLTNPSLKG-YIEPDVVVVTD-P------RGD--AQAVKEAIEVGIPVVALCDTDNLTS 151 (204)
T ss_pred HhCCeeecCccCCCcCcCcchhc-cCCCCEEEEEC-C------ccc--HHHHHHHHHhCCCEEEEEeCCCCcc
Confidence 9987763332 222222211110 11222222222 1 111 2444555667777777777776644
No 145
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=23.70 E-value=3.8e+02 Score=27.07 Aligned_cols=138 Identities=16% Similarity=0.113 Sum_probs=76.7
Q ss_pred hhCCcchhhH---HHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 95 QACPYVKFAH---FTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 95 ~~~P~~~fa~---~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
+.||.+.+-. ..=-+-|-+..+..+.| .|+|.|-|. .|++-...+-+. ..||+-...+++++..|-.
T Consensus 92 q~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~--~~LgCGKGG---DLlKw~kAgI~~-----~igiDIAevSI~qa~~RYr 161 (389)
T KOG1975|consen 92 QRSPIIFLRNFNNWIKSVLINLYTKRGDDV--LDLGCGKGG---DLLKWDKAGIGE-----YIGIDIAEVSINQARKRYR 161 (389)
T ss_pred ccCceeehhhhhHHHHHHHHHHHhcccccc--ceeccCCcc---cHhHhhhhcccc-----eEeeehhhccHHHHHHHHH
Confidence 4678776543 34455666666654443 348888775 455544433332 3445444456777777766
Q ss_pred HHHhhcCCCeEEEecC----CCccCcCcccccccCCc-eEEEeeccccCCCC--CCcHHHHHHHH-HhcCCcEEEEE-ee
Q 045762 172 ELAHSLHVPFEFHPVG----EQLEDLKPHMFNRRVGE-ALAVNAVNRLHRVP--SNCLGNLLAMI-RDQAPNIVTIV-EQ 242 (373)
Q Consensus 172 ~fA~~lgv~fef~~v~----~~~e~l~~~~l~~~~~E-alaVn~~~~Lh~l~--~~~~~~~L~~i-r~L~P~vv~~~-E~ 242 (373)
+-=++.. .|-|.++. +.-+.+.. .+. -++. .=+|.|+|.+|.-- .+..+.+|+.+ +.|+|.-+.+. -+
T Consensus 162 dm~~r~~-~~~f~a~f~~~Dc~~~~l~d-~~e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 162 DMKNRFK-KFIFTAVFIAADCFKERLMD-LLE-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHhhhh-cccceeEEEEeccchhHHHH-hcc-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 5554444 44455421 11111110 111 1233 66899999999875 33456666655 88999955554 56
Q ss_pred cCC
Q 045762 243 EAS 245 (373)
Q Consensus 243 ea~ 245 (373)
|++
T Consensus 239 dsd 241 (389)
T KOG1975|consen 239 DSD 241 (389)
T ss_pred cHH
Confidence 654
No 146
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.57 E-value=2.9e+02 Score=24.09 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEecCCCccCcCcccccccCCceEEEeeccccCCCCCCc-HHHHHHHHHhcCCcEEEE
Q 045762 161 ESAKETGRCLTELAHSLHVPFEFHPVGEQLEDLKPHMFNRRVGEALAVNAVNRLHRVPSNC-LGNLLAMIRDQAPNIVTI 239 (373)
Q Consensus 161 ~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~-~~~~L~~ir~L~P~vv~~ 239 (373)
..+......|...|++++-....-.+-...+...........++.+.++-. .+-+...+. .+.+-..+++.+|++|++
T Consensus 11 g~l~~~s~el~~~A~~l~~~v~~v~~G~~~~~~~~~~~~~Gad~v~~~~~~-~~~~~~~~~~a~al~~~i~~~~p~~Vl~ 89 (168)
T cd01715 11 GELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKAYGADKVLVAEDP-ALAHYLAEPYAPALVALAKKEKPSHILA 89 (168)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEEEECCChHHHHHHHHhcCCCEEEEecCh-hhcccChHHHHHHHHHHHHhcCCCEEEE
Confidence 346666667777899986332211121222222112233455677766532 222222222 456666679999999998
Q ss_pred EeecCCCCCCchHHHHHHHHH
Q 045762 240 VEQEASHNGPYFLGRFLEALH 260 (373)
Q Consensus 240 ~E~ea~~n~~~F~~RF~eaL~ 260 (373)
...- ++-++..|....|.
T Consensus 90 ~~t~---~g~~la~rlAa~L~ 107 (168)
T cd01715 90 GATS---FGKDLAPRVAAKLD 107 (168)
T ss_pred CCCc---cccchHHHHHHHhC
Confidence 8763 35577777766443
No 147
>PTZ00146 fibrillarin; Provisional
Probab=23.36 E-value=7.2e+02 Score=24.43 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=60.6
Q ss_pred eEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhh-cCCCeEEEecCCCccCcCccccc
Q 045762 121 VHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHS-LHVPFEFHPVGEQLEDLKPHMFN 199 (373)
Q Consensus 121 VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~-lgv~fef~~v~~~~e~l~~~~l~ 199 (373)
-.|+|+|.+.|. |.+.+-.+... .=+|.+|+.+. ++.+.|.+.|+. -||.+ +..+... +....
T Consensus 134 ~~VLDLGaG~G~-~t~~lAdiVG~-----~G~VyAVD~s~----r~~~dLl~~ak~r~NI~~----I~~Da~~--p~~y~ 197 (293)
T PTZ00146 134 SKVLYLGAASGT-TVSHVSDLVGP-----EGVVYAVEFSH----RSGRDLTNMAKKRPNIVP----IIEDARY--PQKYR 197 (293)
T ss_pred CEEEEeCCcCCH-HHHHHHHHhCC-----CCEEEEEECcH----HHHHHHHHHhhhcCCCEE----EECCccC--hhhhh
Confidence 468999999998 77666555421 12799998653 333344455543 34422 2222211 11011
Q ss_pred --ccCCceEEEeeccccCCCCCCcHHHHH-HHHHhcCCcEEEEEee--cCCCCCCchHHHHHHHHHHHHH
Q 045762 200 --RRVGEALAVNAVNRLHRVPSNCLGNLL-AMIRDQAPNIVTIVEQ--EASHNGPYFLGRFLEALHYYSA 264 (373)
Q Consensus 200 --~~~~EalaVn~~~~Lh~l~~~~~~~~L-~~ir~L~P~vv~~~E~--ea~~n~~~F~~RF~eaL~~Y~a 264 (373)
+..=+.+..... ..+....++ ..-+-|+|.-.++++- ++-..+++--++|.+-+.....
T Consensus 198 ~~~~~vDvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~ 261 (293)
T PTZ00146 198 MLVPMVDVIFADVA------QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKK 261 (293)
T ss_pred cccCCCCEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHH
Confidence 111123322221 133444555 4456799996555543 3334455666666654544433
No 148
>PRK14967 putative methyltransferase; Provisional
Probab=23.35 E-value=2e+02 Score=26.34 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=29.6
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLT 171 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~ 171 (373)
.-+|+|+|.|.|.- ...++.. + .-++|+|+.+...++.+.+++.
T Consensus 37 ~~~vLDlGcG~G~~----~~~la~~--~--~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 37 GRRVLDLCTGSGAL----AVAAAAA--G--AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CCeEEEecCCHHHH----HHHHHHc--C--CCeEEEEECCHHHHHHHHHHHH
Confidence 35899999998872 2233433 2 1389999988877776665553
No 149
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=2.8e+02 Score=26.35 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=54.5
Q ss_pred HHHHHHhhhhhc-CCCCcHHHH-HHHHHHhhHHHHHhhhhcCCccccc-ccchhHHHHHHhcCCCccccCChHHHHHHHH
Q 045762 261 YYSAIFDSLDAT-FPPDSAQRA-KVEQYIFAPEIRNIVACEGGERTAR-HERLEKWRKIMEGKGFRGVPLSANAVTQSKI 337 (373)
Q Consensus 261 ~Y~alfdsLea~-~~~~~~~R~-~iE~~~l~~eI~niVa~eG~~R~eR-he~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ 337 (373)
.+...-+-|... ++-..++|. ++|. -.++|-|+|+..+.+..-+ +-+-.+=...|+.|||..-|+.+ +.+|+..
T Consensus 72 ~~eI~~eIl~kGeiQlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~e 148 (234)
T COG1500 72 PDEIAEEILKKGEIQLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQE 148 (234)
T ss_pred HHHHHHHHHhcCceeccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHH
Confidence 444444555443 344455555 4454 4889999999888765544 66777888899999999999865 6678777
Q ss_pred HHhcc
Q 045762 338 LLGLY 342 (373)
Q Consensus 338 ll~~~ 342 (373)
.++.-
T Consensus 149 vlK~l 153 (234)
T COG1500 149 VLKAL 153 (234)
T ss_pred HHHHH
Confidence 76643
No 150
>PRK06850 hypothetical protein; Provisional
Probab=22.81 E-value=3e+02 Score=29.24 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=45.1
Q ss_pred HhhhccCceeEEEecCCCCCCc--cHHHHHHHhcCCC--CCCeEEE----EeecCCh--hHHHHHHHHHHHHHhhcCCCe
Q 045762 112 FEAFEAEERVHVIDLDILQGYQ--WPAFMQALAARPG--GAPFLRI----TGVGATI--ESAKETGRCLTELAHSLHVPF 181 (373)
Q Consensus 112 leA~~g~~~VHIIDf~i~~G~Q--Wp~LiqaLa~r~~--gpp~lrI----T~i~~~~--~~l~~tg~rL~~fA~~lgv~f 181 (373)
-+......+-+||=|+.|-=.. ---..++|...|. ..+.+.+ |+|..|. ..+..+-+++.++|+..|+|+
T Consensus 27 ~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi 106 (507)
T PRK06850 27 QELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPI 106 (507)
T ss_pred HHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 3333334555777777652211 1112345543321 1235666 5555443 467888999999999999999
Q ss_pred EEEecC
Q 045762 182 EFHPVG 187 (373)
Q Consensus 182 ef~~v~ 187 (373)
.++.+.
T Consensus 107 ~~~~v~ 112 (507)
T PRK06850 107 TPHKLT 112 (507)
T ss_pred EEEeeC
Confidence 987754
No 151
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.37 E-value=1.2e+02 Score=28.37 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.1
Q ss_pred hhccCceeEEEecCCC-CC-CccHHHHHHHhcCCC
Q 045762 114 AFEAEERVHVIDLDIL-QG-YQWPAFMQALAARPG 146 (373)
Q Consensus 114 A~~g~~~VHIIDf~i~-~G-~QWp~LiqaLa~r~~ 146 (373)
...|.+.+||+|++-. .| ..=..+|+.+++..+
T Consensus 42 ~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~ 76 (234)
T PRK13587 42 QFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTT 76 (234)
T ss_pred hccCCCEEEEEECcccccCCcchHHHHHHHHhhcC
Confidence 3348899999999865 23 244678888886443
No 152
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=22.17 E-value=4.8e+02 Score=22.01 Aligned_cols=19 Identities=5% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCcEEEEE
Q 045762 222 LGNLLAMIRDQAPNIVTIV 240 (373)
Q Consensus 222 ~~~~L~~ir~L~P~vv~~~ 240 (373)
+..+++.+|+-+++++++.
T Consensus 90 l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 90 LRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 6788888888888887775
No 153
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=22.04 E-value=1.8e+02 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCCeEEEEeecCCh----hHHHHHHHHHHHHHhhcCCCeEEEe
Q 045762 147 GAPFLRITGVGATI----ESAKETGRCLTELAHSLHVPFEFHP 185 (373)
Q Consensus 147 gpp~lrIT~i~~~~----~~l~~tg~rL~~fA~~lgv~fef~~ 185 (373)
|||..|||...++. ..|+++-+.+.+..+..|-.|.|+-
T Consensus 217 g~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~gg~~~~~r 259 (262)
T PRK03987 217 GAPRYRIDVTAPDYKTAEKALKKIAERAIKVIKKLGGEGSFVR 259 (262)
T ss_pred CCCeEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 57777777776663 3688999999999999999999874
No 154
>PRK03612 spermidine synthase; Provisional
Probab=21.88 E-value=6.9e+02 Score=26.38 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=56.8
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHH--HHHHHHh-hcCCCeEEEecCCCccCcCcccc
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGR--CLTELAH-SLHVPFEFHPVGEQLEDLKPHMF 198 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~--rL~~fA~-~lgv~fef~~v~~~~e~l~~~~l 198 (373)
.|+|+|.|.|. +...+.++ |+--++|+|+-+++.++.+.+ .+.+..+ .++=| +++.+..+..+.-..
T Consensus 300 rVL~IG~G~G~----~~~~ll~~---~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dp-rv~vi~~Da~~~l~~-- 369 (521)
T PRK03612 300 RVLVLGGGDGL----ALREVLKY---PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDP-RVTVVNDDAFNWLRK-- 369 (521)
T ss_pred eEEEEcCCccH----HHHHHHhC---CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCC-ceEEEEChHHHHHHh--
Confidence 57999999885 44455544 233699999988877766665 3333221 11100 122222221111000
Q ss_pred cccCCceEEEeeccc----cCCCCCCcHHHHHHHH-HhcCCcEEEEEeec
Q 045762 199 NRRVGEALAVNAVNR----LHRVPSNCLGNLLAMI-RDQAPNIVTIVEQE 243 (373)
Q Consensus 199 ~~~~~EalaVn~~~~----Lh~l~~~~~~~~L~~i-r~L~P~vv~~~E~e 243 (373)
..+.=+.+++|+..- ..++. -.+|++.+ +.|+|.-++++..+
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~---t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLY---SVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccc---hHHHHHHHHHhcCCCeEEEEecC
Confidence 012347888885421 01111 24577665 66999988877653
No 155
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=21.78 E-value=2.2e+02 Score=27.75 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=55.7
Q ss_pred EEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEE--EecCCCccCcCcccccc
Q 045762 123 VIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEF--HPVGEQLEDLKPHMFNR 200 (373)
Q Consensus 123 IIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef--~~v~~~~e~l~~~~l~~ 200 (373)
|+|+|.|-|. |=+-|| |.| --+|||+...+.++.+.+. .+.-=.+.-+..| +....+.|++...
T Consensus 93 ilDvGCGgGL----LSepLA-rlg----a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~~~---- 158 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLA-RLG----AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLTGK---- 158 (282)
T ss_pred EEEeccCccc----cchhhH-hhC----CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcccc----
Confidence 9999999886 334444 222 5789999988877777665 2221112222222 2233444444332
Q ss_pred cCCceEEEeeccccCCCCCCcHHHHHHH-HHhcCCc
Q 045762 201 RVGEALAVNAVNRLHRVPSNCLGNLLAM-IRDQAPN 235 (373)
Q Consensus 201 ~~~EalaVn~~~~Lh~l~~~~~~~~L~~-ir~L~P~ 235 (373)
.=||-|+-.|+|.-+ ...|++. ++.|+|.
T Consensus 159 ----fDaVvcsevleHV~d--p~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 159 ----FDAVVCSEVLEHVKD--PQEFLNCLSALLKPN 188 (282)
T ss_pred ----cceeeeHHHHHHHhC--HHHHHHHHHHHhCCC
Confidence 446778888999954 3455554 5788997
No 156
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=21.44 E-value=2.3e+02 Score=29.51 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=40.0
Q ss_pred cCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEe
Q 045762 117 AEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHP 185 (373)
Q Consensus 117 g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~ 185 (373)
+++-+=|+|= |-.+|+.||.+.+.|+. ++..-+.|.+||+..|+.+-|..
T Consensus 105 ~k~~iI~~DS-------Wdaiieyla~~~~~~ed------------~e~l~~dLv~lard~g~~LIlVs 154 (484)
T PF07088_consen 105 GKKPIIAFDS-------WDAIIEYLAEEHDEPED------------IETLTNDLVELARDMGINLILVS 154 (484)
T ss_pred ccCcEEEEec-------HHHHHHHhhhhhcCcHH------------HHHHHHHHHHHHhhcCceEEEEE
Confidence 5666777774 99999999988776543 56778899999999999887754
No 157
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=21.39 E-value=1.5e+02 Score=26.82 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=26.2
Q ss_pred CceeEE-EecCCC-CCCccH---HHHHHHhcCCCCCCeEEEEeecC
Q 045762 118 EERVHV-IDLDIL-QGYQWP---AFMQALAARPGGAPFLRITGVGA 158 (373)
Q Consensus 118 ~~~VHI-IDf~i~-~G~QWp---~LiqaLa~r~~gpp~lrIT~i~~ 158 (373)
.-.||| ||-|+. .|+.+. .|++.+... |.++|.||-+
T Consensus 110 ~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~----~~l~l~Gl~t 151 (218)
T PF01168_consen 110 PLKVHLKVDTGMGRLGVRPEELEELAEAIKAL----PNLRLEGLMT 151 (218)
T ss_dssp TEEEEEEBESSSSSSSBECHHHHHHHHHHHHT----TTEEEEEEEE
T ss_pred ceEEEEeecccccccCCCHHHHHHHHHHHhcC----CCceEeeEec
Confidence 347888 999887 777664 455555543 6799999953
No 158
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=21.24 E-value=1.6e+02 Score=27.33 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=47.2
Q ss_pred hhCCcchhhHHHhhHHHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHH
Q 045762 95 QACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELA 174 (373)
Q Consensus 95 ~~~P~~~fa~~taNqaIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA 174 (373)
+..|+.-+.-+|+|..|+.. +|.. .|..+++.+...-.||-++-+ .+.+.+.+-+.+++|.+..
T Consensus 14 ~~~~~~~i~GvTTNPsll~k-~~~~-------------~~~~~~~~i~~~~~~~v~~qv--~~~~~e~~i~~a~~l~~~~ 77 (211)
T cd00956 14 KASETGLLDGVTTNPSLIAK-SGRI-------------DFEAVLKEICEIIDGPVSAQV--VSTDAEGMVAEARKLASLG 77 (211)
T ss_pred HHHhcCCcCccccCHHHHHh-cCCc-------------CHHHHHHHHHHhcCCCEEEEE--EeCCHHHHHHHHHHHHHhC
Confidence 34677778899999999985 2222 588999999988777655555 3566777777788887764
Q ss_pred h
Q 045762 175 H 175 (373)
Q Consensus 175 ~ 175 (373)
.
T Consensus 78 ~ 78 (211)
T cd00956 78 G 78 (211)
T ss_pred C
Confidence 3
No 159
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=21.06 E-value=68 Score=28.09 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=26.4
Q ss_pred cchhHHHHHHhcCCCccccCChHHHHHHHHHHhcc
Q 045762 308 ERLEKWRKIMEGKGFRGVPLSANAVTQSKILLGLY 342 (373)
Q Consensus 308 e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~ 342 (373)
|....|++.+.+|||.| +++.+-+.-|-..++.-
T Consensus 89 ~Nl~~W~~~L~ka~l~~-~it~~q~~lAl~flrel 122 (148)
T PF06711_consen 89 ENLQRWRRILQKAGLSP-PITDEQVRLALGFLREL 122 (148)
T ss_pred HHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHc
Confidence 56789999999999965 67877777666666654
No 160
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=20.83 E-value=1.7e+02 Score=29.09 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=37.6
Q ss_pred ccCceeEEEecCCCCC----CccHHHHHHHhcCC-----CCCCeEEEEeecCChhHHHHHHHHHHHHHh
Q 045762 116 EAEERVHVIDLDILQG----YQWPAFMQALAARP-----GGAPFLRITGVGATIESAKETGRCLTELAH 175 (373)
Q Consensus 116 ~g~~~VHIIDf~i~~G----~QWp~LiqaLa~r~-----~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~ 175 (373)
...+.+.|.|||..+| .-+-.+|+++-.+. ..||.+-+.--+.|.......-+.|..+-+
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~ 81 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQ 81 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHH
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhh
Confidence 4567999999999999 46777788775332 356788888778776655555555555543
No 161
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=20.80 E-value=1.3e+02 Score=29.66 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=22.0
Q ss_pred eeEE-EecCCC-CCCc----cHHHHHHHhcCCCCCCeEEEEee
Q 045762 120 RVHV-IDLDIL-QGYQ----WPAFMQALAARPGGAPFLRITGV 156 (373)
Q Consensus 120 ~VHI-IDf~i~-~G~Q----Wp~LiqaLa~r~~gpp~lrIT~i 156 (373)
+||| ||-|+. .|.. +..+++.+.. .|.|++.||
T Consensus 127 ~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~----~~~l~l~Gi 165 (358)
T cd06819 127 DVLVEIDVGQGRCGVPPGEAALALARTIAA----LPGLRFAGL 165 (358)
T ss_pred EEEEEECCCCCcCCCCChHHHHHHHHHHHh----CCCceEeEE
Confidence 6777 787766 6765 4455555443 357999999
No 162
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.78 E-value=1.3e+02 Score=20.88 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=21.4
Q ss_pred HHHhcCCHHHHHHHHHHHhcccCCCCChhhH
Q 045762 17 EAVAKEDFMLARRYLHHLNRVVSPLGDSMQR 47 (373)
Q Consensus 17 ~Ai~~~~~~~A~~lL~~l~~~~s~~g~~~qR 47 (373)
.-|+.||.+.|..+|.++-. .|++.||
T Consensus 8 ayie~Gd~e~Ar~lL~evl~----~~~~~q~ 34 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVIE----EGDEAQR 34 (44)
T ss_pred HHHHcCChHHHHHHHHHHHH----cCCHHHH
Confidence 45789999999999998863 5666665
No 163
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=20.78 E-value=2e+02 Score=18.92 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHhhhccCceeEEEecCC
Q 045762 109 QAIFEAFEAEERVHVIDLDI 128 (373)
Q Consensus 109 qaIleA~~g~~~VHIIDf~i 128 (373)
+.|++++.|++.|.=+|-.+
T Consensus 2 ~~il~~lGG~~NI~~v~~C~ 21 (35)
T PF00367_consen 2 KQILEALGGKENIKSVTNCA 21 (35)
T ss_dssp HHHHHHCTTCCCEEEEEE-S
T ss_pred hHHHHHhCCHHHHHHHhcCc
Confidence 57999999999888887655
No 164
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=20.67 E-value=1.9e+02 Score=27.31 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=32.5
Q ss_pred eeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHH
Q 045762 120 RVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTE 172 (373)
Q Consensus 120 ~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~ 172 (373)
..+|+|+|.|.|. +.-.|+.+. |..++|+++.+...++.+.+++..
T Consensus 87 ~~~vLDlg~GsG~----i~l~la~~~---~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 87 TLVVVDLCCGSGA----VGAALAAAL---DGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CCEEEEecCchHH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3579999999885 333444332 346899999998888887777643
No 165
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=20.50 E-value=2.4e+02 Score=25.60 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=38.0
Q ss_pred EEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhhcCCCeEEEecCCCccC
Q 045762 122 HVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHSLHVPFEFHPVGEQLED 192 (373)
Q Consensus 122 HIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~lgv~fef~~v~~~~e~ 192 (373)
.|+|+|.|-|+ |.+.=+++. |.+++|-|++..-.. .-|...++.+|++ .++.+..++|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~KK~----~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVGKKV----AFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSHHHH----HHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCchHH----HHHHHHHHHhCCC-CEEEEEeeecc
Confidence 69999876554 888777774 788999999865322 2355667778876 24444455665
No 166
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=20.35 E-value=2.8e+02 Score=25.62 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=41.4
Q ss_pred HHHhhhccCceeEEEecCCCCCCccHHHHHHHhcCCCCCCeEEEEeecCChhHHHHHHHHHHHHHhh
Q 045762 110 AIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGATIESAKETGRCLTELAHS 176 (373)
Q Consensus 110 aIleA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~r~~gpp~lrIT~i~~~~~~l~~tg~rL~~fA~~ 176 (373)
.++++++=++.-.|.|+|.|.|.+ .++|-.|..+ .-++++|+...+..+.+.++|.+.-..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~-aAlla~lvg~-----~g~Vv~vE~~~~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQ-AALLAHLVGP-----VGRVVSVERDPELAERARRNLARLGID 123 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHH-HHHHHHHHST-----TEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhcCCCCEEEEecCCCcHH-HHHHHHhcCc-----cceEEEECccHHHHHHHHHHHHHhccC
Confidence 466777655556789998888875 3556666532 348899998888888888888776444
Done!