Your job contains 1 sequence.
>045766
MSLPLTPSKRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGV
IGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGR
EEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQE
NTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQITGEVDTVRKALK
LISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPK
FHESGVLDRPKPSPEILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTE
DRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKG
GSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFR
DAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHP
HDDHSAFMHHIHRPGMPPHMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLV
PIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET
ETT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045766
(663 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 645 3.3e-63 1
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 431 3.5e-52 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 377 7.1e-51 3
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 251 5.4e-41 4
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 319 1.2e-34 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 184 3.2e-32 4
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 259 2.4e-25 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 262 1.4e-21 2
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 209 3.4e-18 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 169 9.1e-16 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 158 1.7e-14 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 165 1.9e-14 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 159 3.0e-14 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 159 3.0e-14 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 158 3.4e-14 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 158 3.4e-14 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 158 3.8e-14 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 158 3.8e-14 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 158 3.8e-14 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 158 1.0e-13 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 158 2.4e-13 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 158 2.5e-13 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 158 2.7e-13 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 147 3.5e-13 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 163 9.3e-13 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 156 9.7e-13 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 143 1.0e-12 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 143 1.2e-12 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 143 1.5e-12 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 143 1.6e-12 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 143 1.8e-12 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 143 1.8e-12 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 143 1.8e-12 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 129 1.8e-12 3
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 140 2.9e-12 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 143 8.1e-12 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 143 1.4e-11 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 143 1.4e-11 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 143 1.4e-11 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 143 1.4e-11 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 143 1.4e-11 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 143 1.4e-11 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 126 1.1e-10 2
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 142 1.2e-10 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 142 1.2e-10 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 103 4.2e-10 3
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 154 4.4e-10 1
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 104 4.5e-10 3
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 117 4.6e-10 3
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 124 5.4e-10 3
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 124 5.6e-10 3
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 102 6.6e-10 3
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 117 7.5e-10 3
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 103 8.4e-10 3
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 118 1.6e-09 3
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 117 1.7e-09 3
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 117 1.9e-09 3
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 124 2.8e-09 2
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 124 3.2e-09 2
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 124 3.2e-09 2
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 124 4.3e-09 2
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 124 4.7e-09 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 103 6.1e-09 3
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 134 6.6e-09 3
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 143 6.7e-09 1
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 145 6.7e-09 2
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 145 6.7e-09 2
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 145 8.5e-09 2
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 145 8.6e-09 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 113 8.9e-09 2
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 118 1.1e-08 2
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 123 1.3e-08 3
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 119 1.3e-08 2
ZFIN|ZDB-GENE-080211-1 - symbol:nova2 "neuro-oncological ... 91 1.7e-08 3
SGD|S000000437 - symbol:PBP2 "RNA binding protein" specie... 138 1.7e-08 2
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 127 1.7e-08 3
UNIPROTKB|O73932 - symbol:igf2bp3-a "Insulin-like growth ... 141 2.5e-08 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 103 3.0e-08 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 136 3.8e-08 1
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 105 4.1e-08 2
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 109 6.1e-08 3
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 112 7.6e-08 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 96 9.3e-08 3
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 117 9.9e-08 2
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 102 1.7e-07 2
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 102 1.7e-07 2
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 102 1.7e-07 2
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 102 1.7e-07 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 96 1.8e-07 3
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 120 1.9e-07 2
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 129 2.1e-07 1
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 96 2.2e-07 3
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 96 2.2e-07 3
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 96 2.2e-07 3
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 123 2.5e-07 3
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 112 2.5e-07 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 101 2.7e-07 3
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 113 3.2e-07 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 113 3.2e-07 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 113 3.2e-07 2
WARNING: Descriptions of 59 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 204/632 (32%), Positives = 305/632 (48%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEASDNKKET 104
+ FR+LCP ++ +IGK G ++ + TG IRV + + S+ER+V+I A KK+
Sbjct: 19 VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKD 78
Query: 105 SENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVF 164
E+++ SEN G EE K++ +E + G + E+ S Q ALL VF
Sbjct: 79 ----ESNVCDSENPGSEEP---------KQEKGSECAGTSGG-DDEEAPSSAQMALLRVF 124
Query: 165 ERMVEVEPETEVADQENTKS-SKFVLRLLVLSTQVGCLLGKGGCVIKQI----------- 212
ER+V + V E K S+ + R++V QV L+ KGG +I++I
Sbjct: 125 ERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRIS 184
Query: 213 --DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPD 270
D++P CA D V+Q+ G+ +V+KAL L+++ L ++ P PT P P
Sbjct: 185 STDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGA------P--PTWDECPFPQ 236
Query: 271 HSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXX 330
+ ++ + D H PP P + G +RP E+ FRLLC ++
Sbjct: 237 PGYPPEY--HSMEYHPQWD-H---PPPNPMPEDVGPFNRPVVEEEV-AFRLLCPADKVGS 289
Query: 331 XXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRI 390
R+L+ E+G IKV + +E+R+IVIS + + R S QD V+RV RI
Sbjct: 290 LIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRI 349
Query: 391 ARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASEN 450
I V+ RLLV S IG LLGKGG +I+EMR+ +GA IR+ KDQ K S++
Sbjct: 350 VE-IGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQH 408
Query: 451 EEVVLINGEFEAVQEALFQITTRLRHHFF--RDAFPSINRPLNPTFLDQVSPFPSFIGRR 508
+E+V + G + VQ+ALFQI RLR F R F + P P P P F G R
Sbjct: 409 DEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPYPEPPPPF-GPR 467
Query: 509 EL--SPPGMYSNFGPSFHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRPGMPPHMPDMKPW 566
+ SP +S GP FH+ D + M +PG+ H M P
Sbjct: 468 QYPASPDRYHSPVGP-FHERHCHGPGFDRPPGPGFDRPPSPMSWTPQPGIDGHPGGMVPP 526
Query: 567 GPQ-GLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQISDAKITIT 625
G P+G + + GE+ + L I+Q+S A + +
Sbjct: 527 DVNHGFALRNEPIGSENPVMTSANVEIVIPQAYLGHVY-GENCSNLNYIKQVSGANVVVH 585
Query: 626 DPKPGATETVIIISGTPEQTHAAQSLIQAFVM 657
DPK G TE ++++SGT +Q H AQSL+ AF++
Sbjct: 586 DPKAGTTEGLVVVSGTSDQAHFAQSLLHAFIL 617
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 431 (156.8 bits), Expect = 3.5e-52, Sum P(2) = 3.5e-52
Identities = 130/366 (35%), Positives = 196/366 (53%)
Query: 148 NSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGC 207
+ EK S Q AL + +R+V + +E + E K + +LLV S Q+GC+LG+GG
Sbjct: 111 DGEKVLSPAQDALFRIHDRVVADDARSEDSP-EGEK--QVTAKLLVPSDQIGCILGRGGQ 167
Query: 208 VIKQI------------DK-LPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDH 254
+++ I D+ +P CAL SDE++QI+GEV V+KAL I+ +L +N R
Sbjct: 168 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQ 227
Query: 255 ESIPGNPTGPSHPLPDHSVSSQ--G-APYATGH-RDVADIHLPM--PPSIPKFHESGVLD 308
+ + P+ L H+ + G AP + RD D P+ PP +
Sbjct: 228 NLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPR----------N 277
Query: 309 RPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG 368
P P+ E RL+ E L+QET IKV + + D LI IS
Sbjct: 278 DP-PATEFF-IRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISA 335
Query: 369 PAHPDDRISAPQDAVLRVQTRIARAIP-DNREQTVMTRLLVASNQIGCLLGKGGSIIAEM 427
+D S +AV+R+Q + + + D+ + TRLLV S++IGC+LGKGG+II EM
Sbjct: 336 REVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEM 395
Query: 428 RKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFF-RDAFPSI 486
R+++ A IRILGK+ +PK AS+++E+V I+GE + +EAL QIT+RLR + F R+ S
Sbjct: 396 RRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDREGAVSA 455
Query: 487 NRPLNP 492
P+ P
Sbjct: 456 LMPVLP 461
Score = 241 (89.9 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 60/172 (34%), Positives = 99/172 (57%)
Query: 319 FRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGP-----AHPD 373
FR LC ++ + L+ +T I++ EA+ G ++R+I I P A D
Sbjct: 52 FRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGD 111
Query: 374 -DRISAP-QDAVLRVQTRI----ARA--IPDNREQTVMTRLLVASNQIGCLLGKGGSIIA 425
+++ +P QDA+ R+ R+ AR+ P+ +Q V +LLV S+QIGC+LG+GG I+
Sbjct: 112 GEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQIVQ 170
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477
+R +GA IRI+ +P CA ++E++ I+GE V++AL QI +RL +
Sbjct: 171 NIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
Score = 129 (50.5 bits), Expect = 3.5e-52, Sum P(2) = 3.5e-52
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 47 MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSE 106
+FR LCPV KI VIG+ G+++ Q+ DT IR+ E + G DER++ I + ++
Sbjct: 51 VFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFG 110
Query: 107 NLEASIERSENN-GR-EEASVADESDNKKEDS 136
+ E + +++ R + VAD D + EDS
Sbjct: 111 DGEKVLSPAQDALFRIHDRVVAD--DARSEDS 140
Score = 50 (22.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQA 654
G+ GA + Q+RQ + A I + + + +I IS A I+A
Sbjct: 300 GKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEA 349
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 377 (137.8 bits), Expect = 7.1e-51, Sum P(3) = 7.1e-51
Identities = 92/284 (32%), Positives = 151/284 (53%)
Query: 208 VIKQIDKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
++ + LP C S+E+VQI GE++ V+ AL ++S +L ++ RD + G SH
Sbjct: 211 ILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRESQHRDRSNFQGR----SHS 266
Query: 268 LPDHSVSSQGAPYATGHRDVADIHLPMPP-SIPKF--HESGVLDRPKPSP-------EIL 317
P+ S ++ G Y R + P F +S + P E L
Sbjct: 267 -PERSFAAAGDDYMPQLRRQSSDRFPRGNFRNNNFSSRQSNYAEEAPAVPVGENVYSEEL 325
Query: 318 TFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRIS 377
F++LC ++ L+ E G D++V + V+G+++++I IS PDD
Sbjct: 326 VFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFF 385
Query: 378 APQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRI 437
Q+A+L +QT+I IPD ++ + TRLLV S CL GK GS+ +E+ +L+G ++I
Sbjct: 386 PAQEALLHIQTQIIDLIPD-KDNLITTRLLVPSRDSICLEGKAGSV-SEISRLTGTSVQI 443
Query: 438 LGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRD 481
L +++IP+CAS N+ V+ I GE A +EAL ++T LR H F++
Sbjct: 444 LAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKE 487
Score = 181 (68.8 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEF 460
V+TRL+V+ +GCLLGKGG II +MR + +IRIL ++ +P+C S +EE+V I GE
Sbjct: 176 VVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGEL 235
Query: 461 EAVQEALFQITTRLRHHFFRD 481
AV+ AL +++RLR RD
Sbjct: 236 NAVKNALAIVSSRLRESQHRD 256
Score = 161 (61.7 bits), Expect = 2.4e-25, Sum P(3) = 2.4e-25
Identities = 50/151 (33%), Positives = 74/151 (49%)
Query: 154 SKVQKALLLVFERMVEVE--------PETEVADQENTK--SSKFVLRLLVLSTQVGCLLG 203
S Q+AL V +R++E E P E D + + V RL+V VGCLLG
Sbjct: 133 SPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLG 192
Query: 204 KGGCVIKQI--------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDN 249
KGG +I+Q+ LP C S+E+VQI GE++ V+ AL ++S +L ++
Sbjct: 193 KGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRES 252
Query: 250 SPRDHESIPGNPTGPSHPLPDHSVSSQGAPY 280
RD + G SH P+ S ++ G Y
Sbjct: 253 QHRDRSNFQGR----SHS-PERSFAAAGDDY 278
Score = 134 (52.2 bits), Expect = 7.1e-51, Sum P(3) = 7.1e-51
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 7 PSKRPHDDDNHTEPNGKEKSQKL----AGDYSENQPSKSFPGGIM---FRVLCPVSKIDG 59
P +P ++N+ G + + G +PSKS P + +R+LC +K G
Sbjct: 22 PRSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSKSHPETMATTTYRILCHDAKAGG 81
Query: 60 VIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKK 102
VIGK G ++ I Q TG I V E V G ER +IE SDN++
Sbjct: 82 VIGKSGTIIKSIRQHTGAWINVHELVPGDAER--IIEISDNRR 122
Score = 122 (48.0 bits), Expect = 7.1e-51, Sum P(3) = 7.1e-51
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 611 LKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETE 661
L QI + S A +TI + +P T+ +I ISGTPEQ AQSL+Q F++S E
Sbjct: 599 LAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSIQE 649
Score = 115 (45.5 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 7 PSKRPHDDDNHTEPNGKEKS-QKLAGDYSENQPS-----KSFPGGIMFRVLCPVSKIDGV 60
P R D N + + +Y+E P+ + ++F++LCP KI V
Sbjct: 280 PQLRRQSSDRFPRGNFRNNNFSSRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRV 339
Query: 61 IGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASD 99
+G+ ++ + + GV +RV + V+GSDE+++ I + +
Sbjct: 340 VGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEE 378
Score = 113 (44.8 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 33/91 (36%), Positives = 45/91 (49%)
Query: 309 RPKPS-PEIL---TFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLI 364
RP S PE + T+R+LCHD + +S++Q TG I V E V G +R+I
Sbjct: 56 RPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERII 115
Query: 365 VISGPAH--PDDRI---SAPQDAVLRVQTRI 390
IS PD R+ S Q+A+ V RI
Sbjct: 116 EISDNRRRDPDGRMPSFSPAQEALFSVHDRI 146
Score = 96 (38.9 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 173 ETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK---------QI---DKLPTCAL 220
+T++ D K + RLLV S CL GK G V + QI +++P CA
Sbjct: 395 QTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCAS 454
Query: 221 ASDEVVQITGEVDTVRKAL 239
+D V+QITGE+ R+AL
Sbjct: 455 INDVVIQITGEIRAAREAL 473
Score = 69 (29.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/97 (25%), Positives = 47/97 (48%)
Query: 389 RIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
R +++ P+ T R+L + G ++GK G+II +R+ +GA+I + + +P
Sbjct: 56 RPSKSHPETMATTTY-RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINV--HELVP---G 109
Query: 449 ENEEVVLINGE-----------FEAVQEALFQITTRL 474
+ E ++ I+ F QEALF + R+
Sbjct: 110 DAERIIEISDNRRRDPDGRMPSFSPAQEALFSVHDRI 146
Score = 48 (22.0 bits), Expect = 6.7e-42, Sum P(3) = 6.7e-42
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 43 PGG--IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV 81
PGG ++ R++ + ++GK G+++ Q+ +T IR+
Sbjct: 171 PGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRI 211
Score = 46 (21.3 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 190 RLLVLSTQVGCLLGKGGCVIKQI 212
R+L + G ++GK G +IK I
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSI 93
Score = 44 (20.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIIS 639
+ GE + ++ + ++DP G+ E +I IS
Sbjct: 339 VVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITIS 375
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 251 (93.4 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 74/233 (31%), Positives = 114/233 (48%)
Query: 297 SIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEA- 355
++P H G R E L +++C + + ++Q +G I+V ++
Sbjct: 301 ALPVVHGFGGSSRS----EKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSR 356
Query: 356 VSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGC 415
+ +D +I ++ PDD S +AVL +Q +I D E V +LLV+S IGC
Sbjct: 357 TNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKIN----DEDEDKVKMQLLVSSKVIGC 412
Query: 416 LLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLR 475
++GK GSII+E+RK + A I I + PKCA N+E+V I+GE V++AL QI RLR
Sbjct: 413 IIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLR 472
Query: 476 HHFFRDAFP-SINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFD 527
RD S N+P P + + F S L+ P + + P D
Sbjct: 473 DDVLRDRETGSRNQP--PARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVD 523
Score = 132 (51.5 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 35/106 (33%), Positives = 61/106 (57%)
Query: 376 ISAPQDAVLRVQTRIARAIPDNREQTVMTR-------LLVASNQIGCLLGKGGSIIAEMR 428
+ + Q A+L+V I ++ E T + R LLV S+Q ++GK GSII +R
Sbjct: 117 LCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIR 176
Query: 429 KLSGAYIRILGKD-QIPK--CASENEEVVLINGEFEAVQEALFQIT 471
+ A ++++ KD P CA + + +V+I+GE E+V++ALF ++
Sbjct: 177 GRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVS 222
Score = 127 (49.8 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 30/105 (28%), Positives = 59/105 (56%)
Query: 9 KRPHDD--DNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGE 66
KR H+ DN+ + N + + ++L+ + E + +++R+LCP + VIGK G+
Sbjct: 6 KRTHNRFRDNNND-NNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGK 64
Query: 67 MMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEAS 111
+++ I Q+T I+V + G ER++ I S ++K+ ++E S
Sbjct: 65 VINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYS 109
Score = 121 (47.7 bits), Expect = 8.2e-20, Sum P(4) = 8.2e-20
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 186 KFVLRLLVLSTQVGCLLGKGGCVIKQIDK-------------LPTCALASDEVVQITGEV 232
K ++LLV S +GC++GK G +I +I K P CA +DE+V+I+GEV
Sbjct: 398 KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEV 457
Query: 233 DTVRKALKLISHQLLDNSPRDHES 256
VR AL I +L D+ RD E+
Sbjct: 458 SNVRDALIQIVLRLRDDVLRDRET 481
Score = 113 (44.8 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658
+ G G L IR+IS A I I+D K V +ISGT EQ A++L QAF+MS
Sbjct: 588 VMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIMS 643
Score = 107 (42.7 bits), Expect = 5.4e-41, Sum P(4) = 5.4e-41
Identities = 46/145 (31%), Positives = 66/145 (45%)
Query: 157 QKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI---- 212
Q ALL V + +V T + + + RLLV S+Q ++GK G +IK I
Sbjct: 121 QAALLKVHDAIV-ASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRT 179
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D TCA+ D +V I+GE ++V+KAL +S + SPR E IP +
Sbjct: 180 RANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSPR--EQIPLD 237
Query: 261 PTGPSHP----LP-DHSVSSQGAPY 280
T P +P D S+ Q Y
Sbjct: 238 TTVQEVPASIIIPSDLSIYPQAGLY 262
Score = 79 (32.9 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV-IEASDNKKET 104
+ +V+C SKI VIGK G + I Q +G I V ++ + D+ V+ + A+++ +
Sbjct: 317 LAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDL 376
Query: 105 -SENLEASIERSEN-NGREEASV 125
S +EA + E N +E V
Sbjct: 377 KSMAVEAVLLLQEKINDEDEDKV 399
Score = 76 (31.8 bits), Expect = 4.5e-16, Sum P(4) = 4.5e-16
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING- 458
Q+ + + +N +G ++G+GG + +R++SGA I I S V LI+G
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKN-----SHGGRVALISGT 626
Query: 459 -EFEAVQEALFQ 469
E + E LFQ
Sbjct: 627 SEQKRTAENLFQ 638
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 396 DNREQTVMT-RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
DN++ V+ R+L S +G ++GK G +I +R+ + A I+++ D P C+ E V+
Sbjct: 37 DNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVV--DPFPGCS---ERVI 91
Query: 455 LI 456
I
Sbjct: 92 TI 93
Score = 65 (27.9 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 181 NTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
+++S K ++++ S+++G ++GKGG IK I
Sbjct: 311 SSRSEKLAIKVICSSSKIGRVIGKGGLTIKGI 342
Score = 57 (25.1 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 316 ILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVI 366
++ +R+LC ++QET IKV++ G +R+I I
Sbjct: 43 VVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITI 93
Score = 52 (23.4 bits), Expect = 6.5e-27, Sum P(4) = 6.5e-27
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV 81
R+L P S+ VIGK G ++ I T ++V
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKV 185
Score = 51 (23.0 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATET-VIIISGTPEQTHAAQSLIQAFVM 657
G+ G +K IRQ S + I + D + + VI ++ T ++A ++
Sbjct: 333 GKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLL 386
Score = 50 (22.7 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
Identities = 26/89 (29%), Positives = 38/89 (42%)
Query: 173 ETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVI-----------KQIDKLPTCALA 221
E+E +N V R+L S +G ++GK G VI K +D P C
Sbjct: 30 ESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGC--- 86
Query: 222 SDEVVQITGEVDTVRKALKLISHQLLDNS 250
S+ V+ I V +K + I + LD S
Sbjct: 87 SERVITIFCSVSE-KKDIVDIEYSELDYS 114
Score = 45 (20.9 bits), Expect = 1.3e-34, Sum P(4) = 1.3e-34
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 152 ETSKVQKALLLVFERMVEVEPETEV 176
ET V+KAL V M +V P ++
Sbjct: 210 ETESVKKALFAVSAIMYKVSPREQI 234
Score = 42 (19.8 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 603 IQGEDGACLKQIRQISDAKITITD----PK-PGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G+ + +IR+ + A I I+ PK + ++ ISG E ++ +LIQ
Sbjct: 413 IIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISG--EVSNVRDALIQ 466
Score = 38 (18.4 bits), Expect = 7.8e-32, Sum P(4) = 7.8e-32
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 115 SENNGREEASVADESDNKKEDSVNE 139
++NN + ++ ES+ KK D+ ++
Sbjct: 17 NDNNRNQRRRLSYESEEKKIDNKDD 41
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 319 (117.4 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 103/350 (29%), Positives = 167/350 (47%)
Query: 159 ALLLVFERMVEVEPETEVADQENTKSSK--FVLRLLVLSTQVGCLLGKGGCVIKQI--DK 214
AL V + +V + + D +N K +R+LV S Q+GC++GKGG VI+ + D
Sbjct: 116 ALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDT 175
Query: 215 LPTCALASDEV--VQITGEVDTVRKALKLISHQLLDNSPRDHES--IPGNPTGPSHPLPD 270
+ D + +T D + L +I L+ + + NP+ H L
Sbjct: 176 NAQIRVIKDHLPACALTLSHDEL---LLIIGEPLVVREALYQVASLLHDNPSRFQHLLLS 232
Query: 271 HSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXX 330
S SS P A + M ++ H + + R +C E
Sbjct: 233 SSSSSMHQPGA----------MLMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGG 282
Query: 331 XXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRI 390
++QETG I+V + + +D +I IS +D+ S +A +R+Q R
Sbjct: 283 VIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRC 341
Query: 391 ARAI-PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASE 449
+ + D + + TRLLV+S+QIGCL+GKGG++I+EMR ++ A IRIL K+ +PK A E
Sbjct: 342 SEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIARE 401
Query: 450 NEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVS 499
+EE+V I G +A +AL Q+ RLR + F + P + ++ QV+
Sbjct: 402 DEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLLPTSFPYIPQVT 451
Score = 122 (48.0 bits), Expect = 0.00038, P = 0.00038
Identities = 38/134 (28%), Positives = 67/134 (50%)
Query: 51 LCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEA 110
+CP + GVIGK G ++QI Q+TG TIRV + + D+ ++ I + + ++ S + A
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNA 333
Query: 111 SI---ER-SENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFER 166
+I +R SE G++ +A S S G ++ G E V +A + + ++
Sbjct: 334 AIRLQQRCSEKVGKDANDLAI-STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQK 392
Query: 167 MVEVEPETEVADQE 180
E P+ D+E
Sbjct: 393 --EDVPKIAREDEE 404
Score = 118 (46.6 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 21 NGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIR 80
NG K + L + +N + ++R LCPV K +IGK GE+ QI +T +R
Sbjct: 22 NGGSKRRNLHDETDQNVIASE---DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMR 78
Query: 81 VEETVSGSDERLVVIEASDNK 101
+ E + G +ER+V + +++ +
Sbjct: 79 INEALPGCEERVVTMYSTNEE 99
Score = 47 (21.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIIS 639
G+ G + QIRQ + A I + + + +I IS
Sbjct: 285 GKGGGFINQIRQETGATIRVNTSETDDDDCIIFIS 319
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 184 (69.8 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 70/249 (28%), Positives = 116/249 (46%)
Query: 283 GHRDVADIHLPM-PPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRS 341
G+ + A +P+ S+P H G R E L F++LC +
Sbjct: 281 GYAETAANPVPVFASSLPVTHGFGGSSRS----EELVFKVLCPLCNIMRVIGKGGSTIKR 336
Query: 342 LKQETGCDIKVMEAVS--GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNRE 399
+++ +G I+V ++ + G ++ +I+++ PDD S +AVL +Q I D
Sbjct: 337 IREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQ----EYINDEDA 392
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ V +LLV+S IGC++GK GS+I E+RK + A I I K + +++V ++GE
Sbjct: 393 ENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICI-SK-------GKKDDLVEVSGE 444
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNF 519
+V++AL QI RLR D S+ P D S F S + P S+
Sbjct: 445 VSSVRDALIQIVLRLREDVLGDK-DSVATRKPPARTDNCS-FLSGSSNAGYTLPSFMSSM 502
Query: 520 GPS--FHKF 526
+ FH +
Sbjct: 503 ASTSGFHGY 511
Score = 150 (57.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 52/185 (28%), Positives = 89/185 (48%)
Query: 347 GCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTR- 405
GC +V+ +++ I ++ + QDA+L+V I + +N +T + R
Sbjct: 77 GCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRD 136
Query: 406 ------LLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKD-QIPK--CASENEEVVLI 456
LLV +Q L+GK G I +R+ + A ++++ KD P CA E + VV+I
Sbjct: 137 DNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVI 196
Query: 457 NGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSP---FPSFIGRRELSPP 513
+GE E+V++ALF ++ + ++ P N PL+ T D + PS +
Sbjct: 197 SGEPESVKQALFAVSAIM----YK-INPRENIPLDSTSQDVPAASVIVPSDLSNSVYPQT 251
Query: 514 GMYSN 518
G YSN
Sbjct: 252 GFYSN 256
Score = 121 (47.7 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMM 68
KR N++E N +K ++++ D N+ +++R+LCP+ + GVIGK G+++
Sbjct: 6 KRKQIQRNNSESNRNQK-RRISHD-KINRDEL-----VVYRILCPIDVVGGVIGKSGKVI 58
Query: 69 SQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSEN 117
+ I +T I+V + + G +R++ I S KE E E +SEN
Sbjct: 59 NAIRHNTKAKIKVFDQLHGCSQRVITIYCS--VKEKQE--EIGFTKSEN 103
Score = 114 (45.2 bits), Expect = 7.3e-18, Sum P(3) = 7.3e-18
Identities = 38/144 (26%), Positives = 72/144 (50%)
Query: 120 REEA-SVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVAD 178
RE + S + +D++ + +E +++ S + + +L+ + + E D
Sbjct: 338 REASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDE------D 391
Query: 179 QENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALA-----SDEVVQITGEVD 233
EN K ++LLV S +GC++GK G VI +I K + D++V+++GEV
Sbjct: 392 AENVK-----MQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGKKDDLVEVSGEVS 446
Query: 234 TVRKALKLISHQLLDNSPRDHESI 257
+VR AL I +L ++ D +S+
Sbjct: 447 SVRDALIQIVLRLREDVLGDKDSV 470
Score = 111 (44.1 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658
+ G+ G L+ IR+IS A I I+ K + + ++SGT EQ A++L+QAFVMS
Sbjct: 550 VMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFVMS 605
Score = 104 (41.7 bits), Expect = 3.2e-32, Sum P(4) = 3.2e-32
Identities = 54/186 (29%), Positives = 78/186 (41%)
Query: 136 SVNEGSVLMDGLNSEKET-SKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVL 194
SV E + SE E Q ALL V++ +V + E + +K RLLV
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNK-ECRLLVP 146
Query: 195 STQVGCLLGKGGCVIKQI----------------DKLPTCALASDEVVQITGEVDTVRKA 238
+Q L+GK G IK+I D CA+ D VV I+GE ++V++A
Sbjct: 147 FSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQA 206
Query: 239 LKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQ--GAPYA-TGHRDVADIHLPMP 295
L +S + +PR E+IP + T P V S + Y TG D L
Sbjct: 207 LFAVSAIMYKINPR--ENIPLDSTSQDVPAASVIVPSDLSNSVYPQTGFYSNQDHILQQG 264
Query: 296 PSIPKF 301
+P +
Sbjct: 265 AGVPSY 270
Score = 102 (41.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEE--TVSGSDERLVVIEASDNKKE 103
++F+VLCP+ I VIGK G + +I + +G I V + T G DE ++++ A+++ +
Sbjct: 312 LVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDD 371
Query: 104 T-SENLEASIERSENNGREEA 123
S +EA + E E+A
Sbjct: 372 MKSMAVEAVLLLQEYINDEDA 392
Score = 75 (31.5 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
NR++ V+ R+L + +G ++GK G +I +R + A I++ DQ+ C+ + V+ I
Sbjct: 31 NRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF--DQLHGCS---QRVITI 85
Query: 457 NGEFEAVQEAL 467
+ QE +
Sbjct: 86 YCSVKEKQEEI 96
Score = 69 (29.3 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 406 LLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
+L+ ++ + ++GKGG + +R++SGA I I S + + L++G E ++
Sbjct: 540 ILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASK-----TSHGDHIALLSGTLEQMR 593
Score = 64 (27.6 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 605 GEDGACLKQIRQISDAKITITDP--KPGATETVIIISGTPEQTHAAQSLIQAFVM 657
G+ G+ +K+IR+ S + I + D K G E VII++ T ++A ++
Sbjct: 328 GKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLL 382
Score = 58 (25.5 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV 81
R+L P S+ +IGK GE + +I + T +++V
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174
Score = 57 (25.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/102 (21%), Positives = 42/102 (41%)
Query: 315 EILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVIS------- 367
E++ +R+LC + +++ T IKV + + G R+I I
Sbjct: 34 ELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQ 93
Query: 368 ---GPAHPDDR-ISAPQDAVLRVQTRIARAIPDNREQTVMTR 405
G ++ + QDA+L+V I + +N +T + R
Sbjct: 94 EEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDR 135
Score = 51 (23.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 605 GEDGACLKQIRQISDAKITI-----TDPKPGAT---ETVIIISGTPEQTHAAQSLIQAFV 656
G+ G +K+IR+ + A + + +DP + V++ISG PE A + A +
Sbjct: 155 GKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIM 214
Score = 50 (22.7 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 181 NTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLP-TCALASD 223
+++S + V ++L + ++GKGG IK+I + +C +D
Sbjct: 306 SSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVND 349
Score = 48 (22.0 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
G+ G+ + +IR+ ++A I I+ G + ++ +SG E + +LIQ
Sbjct: 411 GKSGSVINEIRKRTNANICISK---GKKDDLVEVSG--EVSSVRDALIQ 454
Score = 40 (19.1 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 188 VLRLLVLSTQVGCLLGKGGCVIKQI 212
V R+L VG ++GK G VI I
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAI 61
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 259 (96.2 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 121/457 (26%), Positives = 202/457 (44%)
Query: 43 PGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKK 102
P RV+C S I G+IG +G ++S++ ++TG I E V+GSD +V I S
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGS---- 77
Query: 103 ETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLL 162
T+ N SI ++ V + S + ED V E S Q AL+
Sbjct: 78 -TAVN--QSILLTDR-------VGEFSGGEHEDWVT------------CEVSAAQTALIR 115
Query: 163 VFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK--------QIDK 214
V ER V + + + + +L Q+G +LG GG ++ I
Sbjct: 116 VLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV 175
Query: 215 LPT--CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHS 272
LP C +DE++QITG+V V+KAL ++S + +N+P + G P P S
Sbjct: 176 LPPPICGTKNDELIQITGDVLAVKKALVMVSSYIQNNAP-----LNGYPP-PLSIKGYES 229
Query: 273 VSSQGA---PYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXX 329
+S+ G P++ ++ L I + D + + F+++
Sbjct: 230 LSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVVAG 289
Query: 330 XXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTR 389
R+L+ ETG I V + + +R++ +S + + R S Q+A+ V R
Sbjct: 290 GIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFAR 349
Query: 390 -----IARAI-PD-NREQTVMTRLLVASNQIGCLLGKGG--SIIAEMRKLSGAYIRILGK 440
+ + + P + V T+LLV S+ G G +IIA +GA + I
Sbjct: 350 SVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNREAIIA-----TGADVHISVG 404
Query: 441 DQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477
+Q+ + SENE V+ I GE+ VQ+AL ++++LR +
Sbjct: 405 NQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLREN 441
Score = 152 (58.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 43/135 (31%), Positives = 73/135 (54%)
Query: 361 DRLIVISGPAHPD---DRISAPQDAVLRVQTR--IARA------IPDNREQTVMTRLLVA 409
DR+ SG H D +SA Q A++RV R + A + D ++ +L
Sbjct: 88 DRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILAD 147
Query: 410 SNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQ 469
NQIG +LG GG + MR+ SGA IR+L P C ++N+E++ I G+ AV++AL
Sbjct: 148 RNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALVM 204
Query: 470 ITTRLRHHFFRDAFP 484
+++ ++++ + +P
Sbjct: 205 VSSYIQNNAPLNGYP 219
Score = 107 (42.7 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
+ G DG + ++QIS A + + DP TE ++ISG PEQ A SLI++ + +
Sbjct: 578 LYGRDGTGVDNLQQISGANVDVKDPT--GTEATVLISGNPEQARTAMSLIESILTDQ 632
Score = 94 (38.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 25/97 (25%), Positives = 47/97 (48%)
Query: 12 HDDDNHTE--PNGKEKSQKLAGDYSENQPSKSFPGG------IMFRVLCPVSKIDGVIGK 63
+ +D H+E PN + S A + + + GG ++F+++ G+IGK
Sbjct: 235 NSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGK 294
Query: 64 DGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
G ++ + +TG +I V + S ER+V + A +N
Sbjct: 295 QGTIIRALQNETGASISVGAPLKVSGERVVTVSAREN 331
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 262 (97.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 93/360 (25%), Positives = 155/360 (43%)
Query: 314 PEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPD 373
P FR+L ++ + + +ET IK+++ GT +R +++SG P+
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPE 243
Query: 374 DRISAPQDAVLRVQTRIARAIPDNREQT-----VMTRLLVASNQIGCLLGKGGSIIAEMR 428
+ D +LRV RI + Q V TRLLV ++Q G L+GK G + ++
Sbjct: 244 SSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQ 303
Query: 429 KLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINR 488
+ S +R+LG + +P A +++ VV + GE +V AL I + LR ++R
Sbjct: 304 EASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFL-------VDR 356
Query: 489 PLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVXXXXXXXSFHPHDDHSAFM 548
+ P F +Q+ P+ + + PP + ++GP +V + P+
Sbjct: 357 SIIPFFENQMQK-PT--RQMDHMPPP-HQSWGPPQGHAPSVGGGGYGHNPPPYMQPPP-R 411
Query: 549 HHIHRPGMPPHM--PDMKPWGPQGLMEVGG--PMGF-----PDFXXXXXXXXXXXXXXXX 599
H + P PP M P M+ QG+ G PM P
Sbjct: 412 HDSYYP--PPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPMVAQQVTQQMQIPLSYA 469
Query: 600 XXIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G G+ + R++S A +TI + + E + +SGT Q A LIQ F M+E
Sbjct: 470 DAVI-GTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNF-MAE 527
Score = 113 (44.8 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG 76
H E K + ++ A E + +PG +FR+L P K+ +IG+ G+++ +I ++T
Sbjct: 158 HLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETR 217
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIE 113
I++ + G+ ER V++ K+E +L S++
Sbjct: 218 ARIKILDGPPGTTERAVMVSG---KEEPESSLPPSMD 251
Score = 112 (44.5 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 57/168 (33%), Positives = 80/168 (47%)
Query: 139 EGSVLMDGLNSEKETS--KVQKALLLVFERMVE-VEPETEVADQENTKSSKFVLRLLVLS 195
E +V++ G E E+S LL V R+V+ ++ E A SK RLLV +
Sbjct: 231 ERAVMVSG-KEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPP----SKVSTRLLVPA 285
Query: 196 TQVGCLLGK-GG----------CVIKQI--DKLPTCALASDEVVQITGEVDTVRKALKLI 242
+Q G L+GK GG C+++ + + LP AL D VV++ GE +V +AL+LI
Sbjct: 286 SQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELI 345
Query: 243 -SHQ---LLDNSPRDH-ESIPGNPTGP-SHPLPDHSVSSQGAPYATGH 284
SH L+D S E+ PT H P H S G P GH
Sbjct: 346 ASHLRKFLVDRSIIPFFENQMQKPTRQMDHMPPPHQ--SWGPPQ--GH 389
Score = 66 (28.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 28/118 (23%), Positives = 60/118 (50%)
Query: 102 KETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQ--KA 159
++ ++ + ++ N +E+ + DE+ ++ + +G V D N ++ KV+ +
Sbjct: 99 EDVQDHSQDDLQYQPQN-QEQFQLQDEAHDQAQYQA-QGDV-QDH-NGDEVQDKVEDEEG 154
Query: 160 LLLVFERMVEVEPETE--VADQENTKSS---KFVLRLLVLSTQVGCLLGKGGCVIKQI 212
+ E + + EPE + V +E + V R+LV + +VG ++G+ G VIK+I
Sbjct: 155 IPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKI 212
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 209 (78.6 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 54/144 (37%), Positives = 83/144 (57%)
Query: 340 RSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNRE 399
+ + +ET IKV++ T DR+++ISG P+ +S DAVLRV R++ +PDN +
Sbjct: 97 KKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVS-GLPDNDD 155
Query: 400 QTVMT--------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENE 451
V RLLVAS Q L+GK GS+I + + SGA +RIL +++ P A+++E
Sbjct: 156 DDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDE 215
Query: 452 EVVLINGEFEAVQEALFQITTRLR 475
+V + GE + +AL I LR
Sbjct: 216 RIVDLQGEALKILKALEAIVGHLR 239
Score = 109 (43.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 26/101 (25%), Positives = 54/101 (53%)
Query: 42 FPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNK 101
+PG +FR++ PV+K+ +IG+ G+ + ++ ++T I+V + + +R+V+I K
Sbjct: 70 WPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISG---K 126
Query: 102 KETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSV 142
+E + +++ R + + D D +D N GSV
Sbjct: 127 EEPEAYMSPAMDAVLRVFRRVSGLPDNDD---DDVQNAGSV 164
Score = 100 (40.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 41/132 (31%), Positives = 61/132 (46%)
Query: 142 VLMDGLNS-EKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGC 200
VL+ G E S A+L VF R+ + P+ + D +N S +RLLV STQ
Sbjct: 121 VLISGKEEPEAYMSPAMDAVLRVFRRVSGL-PDNDDDDVQNAGSVFSSVRLLVASTQAIN 179
Query: 201 LLGKGGCVIKQI-------------DKLPTCALASDEVVQITGEVDTVRKALK-LISHQL 246
L+GK G +IK I ++ P A + +V + GE + KAL+ ++ H
Sbjct: 180 LIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGH-- 237
Query: 247 LDNSPRDHESIP 258
L DH +P
Sbjct: 238 LRRFLVDHTVVP 249
Score = 88 (36.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETE 661
I G +GA + IR+ S A ITI + P + + I GT Q A+ LIQ F+++ E
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKE-SPHPDQITVEIKGTTSQVQTAEQLIQEFIINHKE 412
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 169 (64.5 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 56/205 (27%), Positives = 97/205 (47%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 77
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 78 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 137
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPT 493
+++ G D +P + E V I+G +A+ + + QI + + +I P T
Sbjct: 138 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDQLT 193
Query: 494 FLDQVS----PFPSFIGRRELSPPG 514
L Q++ PFP +G+ + PG
Sbjct: 194 KLHQLAMQQTPFPP-LGQTNPAFPG 217
Score = 116 (45.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 57/236 (24%), Positives = 98/236 (41%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 73 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 131
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDN-SPRDHESIPG 259
D LP +++ V I+G D + + +K I +L+ + + +IP
Sbjct: 132 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPH 188
Query: 260 NPTGPSHPLPDHSVSSQGAPYAT-GHRDVA--DIHLPMPPSIPKFHESGVLDRPKPSPEI 316
P H ++ Q P+ G + A LP+ S + G SP
Sbjct: 189 ----PDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPA 244
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
T L ++ ++Q +G IK+ A G+ +R I I+G PA+
Sbjct: 245 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 300
Score = 99 (39.9 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 259 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 315
Score = 89 (36.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 21 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 73
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 74 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 113
Score = 86 (35.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 97 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 155
Query: 95 IEAS 98
I +
Sbjct: 156 ISGT 159
Score = 86 (35.3 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 211 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 268
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 269 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 312
Score = 78 (32.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 122 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 161
Score = 70 (29.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 24 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 83
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 84 AYKFEEDIINSMSNSPATSKPP 105
Score = 69 (29.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 33 YSENQPSKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS 88
+ SK GG+ R+L ++ +IGK GE + ++ +++G I + E
Sbjct: 5 FGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNC 62
Query: 89 DERLVVI 95
ER+V I
Sbjct: 63 PERIVTI 69
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 158 (60.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 143 (55.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 60/239 (25%), Positives = 102/239 (42%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 65 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 179
Query: 261 PTGPSHPL---PDHSVSSQGAPYATGHRD-VADIH---LPMPPSIPKFHESGVLDRPKPS 313
P S P+ + + QG YA H D + +H + P P + S
Sbjct: 180 PKPASTPVIFAGGQAYTIQGQ-YAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 238
Query: 314 PEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
P T L ++ ++Q +G IK+ A G+ +R I I+G PA+
Sbjct: 239 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 297
Score = 99 (39.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 256 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 312
Score = 89 (36.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 105
Score = 86 (35.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 89 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 95 IEAS 98
I +
Sbjct: 148 ISGT 151
Score = 83 (34.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 406 LLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQE 465
L + ++ IGC++G+ G+ I E+R++SGA I+I + +E + I G +
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE-----GSSERQITITGTPANISL 300
Query: 466 ALFQITTRL 474
A + I RL
Sbjct: 301 AQYLINARL 309
Score = 78 (32.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 114 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 70 (29.7 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP 97
Score = 67 (28.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK GE + ++ +++G I + E ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVT 60
Query: 95 I 95
I
Sbjct: 61 I 61
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 165 (63.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 47/157 (29%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 71
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I EMR+ +GA
Sbjct: 72 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G EA+ + + QI
Sbjct: 132 QVQVAG-DMLP---NSTERAVTISGTPEAIIQCVKQI 164
Score = 100 (40.3 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 53/224 (23%), Positives = 100/224 (44%)
Query: 95 IEASDNKKETSENLEASIERSENNGREEASVADESDN--KK--EDS-----VNEGSVLMD 145
+E S + E N+ +I R +G+E S+ + KK E+S ++EG+
Sbjct: 1 MEPSKVQSEGGLNVTLTI-RLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPER 59
Query: 146 GLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKG 205
+ T + KA ++ + E + +++ T LRL+V ++Q G L+GKG
Sbjct: 60 IVTITGPTDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKG 118
Query: 206 GCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRD 253
G IK++ D LP +++ V I+G + + + +K I +L++ P+
Sbjct: 119 GSKIKEMRESTGAQVQVAGDMLPN---STERAVTISGTPEAIIQCVKQICVVMLESPPKG 175
Query: 254 HESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADI--HLPMP 295
+IP P S P+ + P A +++ + H P+P
Sbjct: 176 -ATIPYRPKPASTPVIFSGGQVRADPLAASAANLSLLLQHQPLP 218
Score = 93 (37.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQA 654
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A
Sbjct: 281 IIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 332
Score = 89 (36.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 67
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 107
Score = 84 (34.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 371 HPDDRISAPQDAVLRVQ-TRIARAIP-----DNREQTVMTRLLVASNQIGCLLGKGGSII 424
HPD Q A+ + T + + P D L + ++ IGC++G+ G+ I
Sbjct: 230 HPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKI 289
Query: 425 AEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFP 484
E+R++SGA I+I + +E + I G + A + I R FRD
Sbjct: 290 NEIRQMSGAQIKIANAME-----GSSERQITITGTPANISLAQYLINAR-----FRDVAA 339
Query: 485 SINRPLNPT 493
N P + T
Sbjct: 340 MWNDPSSMT 348
Score = 83 (34.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + ++ + TG ++V + + S ER V
Sbjct: 91 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVT 149
Query: 95 IEAS 98
I +
Sbjct: 150 ISGT 153
Score = 78 (32.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 267 PLPDHSVSSQGAPYATGHRD-VADIH-LPMP--PSIPKFHESGVLDRPKPSPEILTFRLL 322
PLP +++ Q YA H D + +H L M P P + SP T L
Sbjct: 216 PLPAYTIQGQ---YAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDASPPASTHELT 272
Query: 323 CHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
++ ++Q +G IK+ A+ G+ +R I I+G PA+
Sbjct: 273 IPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPAN 322
Score = 78 (32.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K++R+ + A++ + D P +TE + ISGTPE
Sbjct: 116 GKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPE 155
Score = 69 (29.3 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 37 QPSK-SFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDER 91
+PSK GG+ R+L ++ +IGK GE + ++ +++G I + E ER
Sbjct: 2 EPSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPER 59
Query: 92 LVVI 95
+V I
Sbjct: 60 IVTI 63
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 159 (61.0 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 48/178 (26%), Positives = 85/178 (47%)
Query: 299 PKFHESGVLDRPKPSPEI---LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEA 355
P+ H G ++ + LT RLL H + + +++E+G I + E
Sbjct: 25 PELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG 84
Query: 356 VSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQ 412
+R++ I+GP D A + + I ++ P + V RL+V ++Q
Sbjct: 85 --NCPERIVTITGPT--DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQ 140
Query: 413 IGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
G L+GKGGS I E+R+ +GA +++ G D +P + E V I+G +A+ + + QI
Sbjct: 141 CGSLIGKGGSKIKEIRESTGAQVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 194
Score = 110 (43.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 97 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 156 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 211
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 212 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 255
Score = 99 (39.9 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 308 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 364
Score = 86 (35.3 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 260 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 318 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 361
Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 121 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 95 IEAS 98
I +
Sbjct: 180 ISGT 183
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP 129
Score = 67 (28.6 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK GE + ++ +++G I + E ER+V
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVT 92
Query: 95 I 95
I
Sbjct: 93 I 93
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 159 (61.0 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 48/178 (26%), Positives = 85/178 (47%)
Query: 299 PKFHESGVLDRPKPSPEI---LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEA 355
P+ H G ++ + LT RLL H + + +++E+G I + E
Sbjct: 25 PELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG 84
Query: 356 VSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQ 412
+R++ I+GP D A + + I ++ P + V RL+V ++Q
Sbjct: 85 --NCPERIVTITGPT--DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQ 140
Query: 413 IGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
G L+GKGGS I E+R+ +GA +++ G D +P + E V I+G +A+ + + QI
Sbjct: 141 CGSLIGKGGSKIKEIRESTGAQVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 194
Score = 110 (43.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 97 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 156 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 211
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 212 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 255
Score = 99 (39.9 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 308 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 364
Score = 86 (35.3 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 260 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 318 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 361
Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 121 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 95 IEAS 98
I +
Sbjct: 180 ISGT 183
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP 129
Score = 67 (28.6 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK GE + ++ +++G I + E ER+V
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVT 92
Query: 95 I 95
I
Sbjct: 93 I 93
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 158 (60.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 111 (44.1 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 44/172 (25%), Positives = 76/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 65 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 179
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + P A +++ L PP +P + G P P
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLS--LLLQPPPLPAYTIQGQYAIPHP 229
Score = 99 (39.9 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 298 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 354
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 105
Score = 86 (35.3 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 250 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 307
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 308 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 351
Score = 86 (35.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 89 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 95 IEAS 98
I +
Sbjct: 148 ISGT 151
Score = 78 (32.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 114 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 70 (29.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP 97
Score = 67 (28.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK GE + ++ +++G I + E ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVT 60
Query: 95 I 95
I
Sbjct: 61 I 61
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 158 (60.7 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 107 (42.7 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 44/172 (25%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 65 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 179
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + P A +++ + L PP +P + G P P
Sbjct: 180 PKPASTPVIFAGGQVRADPLAASTANLS-LLLQHPP-LPAYTIQGQYAIPHP 229
Score = 99 (39.9 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 298 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 354
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 105
Score = 86 (35.3 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 250 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 307
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 308 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 351
Score = 86 (35.3 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 89 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 95 IEAS 98
I +
Sbjct: 148 ISGT 151
Score = 78 (32.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 114 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 70 (29.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 76 AYKFEEDIINSMSNSPATSKPP 97
Score = 67 (28.6 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK GE + ++ +++G I + E ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVT 60
Query: 95 I 95
I
Sbjct: 61 I 61
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 158 (60.7 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 101
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 102 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 162 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 194
Score = 110 (43.8 bits), Expect = 9.1e-12, Sum P(3) = 9.1e-12
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 97 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 156 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 211
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 212 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 255
Score = 99 (39.9 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 307 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 363
Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 97
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 137
Score = 86 (35.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 121 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 95 IEAS 98
I +
Sbjct: 180 ISGT 183
Score = 83 (34.3 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 406 LLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQE 465
L + ++ IGC++G+ G+ I E+R++SGA I+I + +E + I G +
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE-----GSSERQITITGTPANISL 351
Query: 466 ALFQITTRL 474
A + I RL
Sbjct: 352 AQYLINARL 360
Score = 78 (32.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 146 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP 129
Score = 69 (29.3 bits), Expect = 9.1e-12, Sum P(3) = 9.1e-12
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 33 YSENQPSKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS 88
+ SK GG+ R+L ++ +IGK GE + ++ +++G I + E
Sbjct: 29 FGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNC 86
Query: 89 DERLVVI 95
ER+V I
Sbjct: 87 PERIVTI 93
Score = 62 (26.9 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 305 GVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLI 364
G L SP T L ++ ++Q +G IK+ A G+ +R I
Sbjct: 281 GTLSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 340
Query: 365 VISG-PAH 371
I+G PA+
Sbjct: 341 TITGTPAN 348
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 158 (60.7 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 101
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 102 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 162 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 194
Score = 110 (43.8 bits), Expect = 9.2e-12, Sum P(3) = 9.2e-12
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 97 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 156 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 211
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 212 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 255
Score = 99 (39.9 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 308 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 364
Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 97
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 137
Score = 86 (35.3 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 260 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 318 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 361
Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 121 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 95 IEAS 98
I +
Sbjct: 180 ISGT 183
Score = 82 (33.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 47/187 (25%), Positives = 75/187 (40%)
Query: 213 DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPL---P 269
D LP +++ V I+G D + + +K I +L++ P+ +IP P S P+
Sbjct: 168 DMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYRPKPASTPVIFAG 223
Query: 270 DHSVSSQGAPYATGHRD-VADIH------LPMPP---SIPKF-------HES-------G 305
+ + QG YA H D + +H P PP + P F H S G
Sbjct: 224 GQAYTIQGQ-YAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMG 282
Query: 306 VLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIV 365
SP T L ++ ++Q +G IK+ A G+ +R I
Sbjct: 283 QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQIT 342
Query: 366 ISG-PAH 371
I+G PA+
Sbjct: 343 ITGTPAN 349
Score = 78 (32.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 146 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP 129
Score = 69 (29.3 bits), Expect = 9.2e-12, Sum P(3) = 9.2e-12
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 33 YSENQPSKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS 88
+ SK GG+ R+L ++ +IGK GE + ++ +++G I + E
Sbjct: 29 FGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNC 86
Query: 89 DERLVVI 95
ER+V I
Sbjct: 87 PERIVTI 93
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 158 (60.7 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPT--DAIF 101
Query: 377 SAPQDAVLRVQTRIARAI---PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ P + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 102 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 162 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 194
Score = 110 (43.8 bits), Expect = 9.2e-12, Sum P(3) = 9.2e-12
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 97 TDAIFKAFAMIAYKFEE-DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 155
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 156 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 211
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 212 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 255
Score = 99 (39.9 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 308 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 364
Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIVTITGPT 97
Query: 461 EAVQEALFQITTRLRHHFFRDAF--PSINRPLNPTFLDQVSP 500
+A+ +A I + P+ ++P P L V P
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKP--PVTLRLVVP 137
Score = 86 (35.3 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIA 425
+ PA P +++ P + Q + ++ + T L N IGC++G+ G+ I
Sbjct: 260 TNPAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKIN 317
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R++SGA I+I + +E + I G + A + I RL
Sbjct: 318 EIRQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 361
Score = 86 (35.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N P+ S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 121 NSPATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 95 IEAS 98
I +
Sbjct: 180 ISGT 183
Score = 78 (32.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 146 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
Query: 243 SHQLLDNSPRDHESIPGNPTGP 264
+++ ++ + P P
Sbjct: 108 AYKFEEDIINSMSNSPATSKPP 129
Score = 69 (29.3 bits), Expect = 9.2e-12, Sum P(3) = 9.2e-12
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 33 YSENQPSKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS 88
+ SK GG+ R+L ++ +IGK GE + ++ +++G I + E
Sbjct: 29 FGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNC 86
Query: 89 DERLVVI 95
ER+V I
Sbjct: 87 PERIVTI 93
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 158 (60.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/157 (28%), Positives = 80/157 (50%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT--DAIF 68
Query: 377 SAPQDAVLRVQTRIARAIPDNR---EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A L+ + I ++ ++ + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 69 KAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 128
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 129 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 161
Score = 110 (43.8 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 51/196 (26%), Positives = 85/196 (43%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSK--FVLRLLV 193
+++EGS + T + KA ++ ++ E + + +T +SK LRL+V
Sbjct: 47 NISEGSCPERIVTITGPTDAIFKAFSMI---ALKFEEDINASMTNSTVTSKPPVTLRLVV 103
Query: 194 LSTQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALKL 241
++Q G L+GKGG IK+I D LP +++ V I+G D + + +K
Sbjct: 104 PASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQ 160
Query: 242 ISHQLLD---NSPRDHESIPGNPTGPSHPL--PDHSVSSQGAPYATGHRDVADIHLPMPP 296
I +L+ +SP +IP P S P+ V + + G+ V D+ LP
Sbjct: 161 ICVVMLEVSEHSPPKGATIPYRPKPASAPIIFAGGQVRADTILASAGNHTVLDLCLPCAS 220
Query: 297 SIPKFHESGVLDRPKP 312
F G P P
Sbjct: 221 RFQAFTIQGQYAIPHP 236
Score = 94 (38.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G+ + +IRQ+S A+I I + G+ E + I+G+P AQ LI A + SE
Sbjct: 294 IIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINARLSSE 350
Score = 87 (35.7 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D T L + ++ IGC++G+ GS I E+R++SGA I+I + E V
Sbjct: 274 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE-----GSAERQVT 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G + A + I RL
Sbjct: 329 ITGSPANISLAQYLINARL 347
Score = 85 (35.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 12 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ERIVTITGPT 64
Query: 461 EAVQEALFQITTR 473
+A+ +A I +
Sbjct: 65 DAIFKAFSMIALK 77
Score = 78 (32.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 113 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 152
Score = 76 (31.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVVIEAS 98
+ R++ P S+ +IGK G + +I + TG ++V + + S ER V I +
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 150
Score = 67 (28.6 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS-DERLV 93
SK GG+ R+L ++ +IGK GE + ++ +++G I + E GS ER+V
Sbjct: 2 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIV 58
Query: 94 VI 95
I
Sbjct: 59 TI 60
Score = 67 (28.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK G +K++ + + E +V ITG D + KA +I
Sbjct: 15 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGSCPERIVTITGPTDAIFKAFSMI 74
Query: 243 SHQLLD--NSPRDHESIPGNP 261
+ + + N+ + ++ P
Sbjct: 75 ALKFEEDINASMTNSTVTSKP 95
Score = 57 (25.1 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
++Q +G IK+ A G+ +R + I+G PA+
Sbjct: 305 IRQMSGAQIKIANATEGSAERQVTITGSPAN 335
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 158 (60.7 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 45/157 (28%), Positives = 80/157 (50%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAIPDNR---EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A L+ + I ++ ++ + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 154 (59.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 66/258 (25%), Positives = 116/258 (44%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSK--FVLRLLV 193
+++EGS + T + KA ++ ++ E + + +T +SK LRL+V
Sbjct: 48 NISEGSCPERIVTITGPTDAIFKAFSMI---ALKFEEDINASMTNSTVTSKPPVTLRLVV 104
Query: 194 LSTQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALKL 241
++Q G L+GKGG IK+I D LP +++ V I+G D + + +K
Sbjct: 105 PASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQ 161
Query: 242 ISHQLLDNSPRDHESIPGNPTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPM--P 295
I +L++ P+ +IP P S P+ + + QG YA H D+ +H L M P
Sbjct: 162 ICVVMLESPPKG-ATIPYRPKPASAPIIFAGGQAFTIQGQ-YAIPHPDLTKLHQLAMQHP 219
Query: 296 PSIPKFHES-GVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVME 354
P P + G +R + + L ++ ++Q +G IK+
Sbjct: 220 PFTPLGQTTPGFPERLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAN 279
Query: 355 AVSGTEDRLIVISG-PAH 371
A G+ +R + I+G PA+
Sbjct: 280 ATEGSAERQVTITGSPAN 297
Score = 88 (36.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQA 654
I G G+ + +IRQ+S A+I I + G+ E + I+G+P AQ LI A
Sbjct: 256 IIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINA 307
Score = 85 (35.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTR 473
+A+ +A I +
Sbjct: 66 DAIFKAFSMIALK 78
Score = 78 (32.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 114 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 76 (31.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVVIEAS 98
+ R++ P S+ +IGK G + +I + TG ++V + + S ER V I +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 67 (28.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS-DERLV 93
SK GG+ R+L ++ +IGK GE + ++ +++G I + E GS ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIV 59
Query: 94 VI 95
I
Sbjct: 60 TI 61
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 158 (60.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 46/157 (29%), Positives = 79/157 (50%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+ I V E +R++ I+GP D
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTITGPT--DAIF 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ +++ + V RL+V ++Q G L+GKGGS I EMR+ +GA
Sbjct: 72 KAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G EA+ + + QI
Sbjct: 132 QVQVAG-DMLP---NSTERAVTISGTPEAIIQCVKQI 164
Score = 96 (38.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 56/226 (24%), Positives = 102/226 (45%)
Query: 95 IEASDNKKETSENLEASIERSENNGREEASVADESDN--KK--EDS-----VNEGSVLMD 145
+E S + E N+ +I R +G+E S+ + KK E+S V+EG+
Sbjct: 1 MELSKVQSEGGLNVTLTI-RLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGNCPER 59
Query: 146 GLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKG 205
+ T + KA ++ + E + +++ + T LRL+V ++Q G L+GKG
Sbjct: 60 IVTITGPTDAIFKAFAMIAYKFEE-DIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKG 118
Query: 206 GCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRD 253
G IK++ D LP +++ V I+G + + + +K I +L++ P+
Sbjct: 119 GSKIKEMRESTGAQVQVAGDMLPN---STERAVTISGTPEAIIQCVKQICVVMLESPPKG 175
Query: 254 HESIPGNPTGPSHPL--PDHSVSSQG--APYATGHRDVADIHLPMP 295
+IP P + P+ V + AP AT + + H P+P
Sbjct: 176 -ATIPYRPKPATAPVIFSGGQVRADTLTAP-ATANLSLLLQHQPLP 219
Score = 90 (36.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQA 654
I G G + +IRQ+S A+I I + G+++ I I+GTP AQ LI A
Sbjct: 281 IIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINA 332
Score = 82 (33.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D Q L + ++ IGC++G+ G+ I E+R++SGA I+I + ++ +
Sbjct: 261 DASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME-----GSSDRQIT 315
Query: 456 INGEFEAVQEALFQITTRLR 475
I G + A + I R R
Sbjct: 316 ITGTPANISLAQYLINARFR 335
Score = 81 (33.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 267 PLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP----SPEILTFRLL 322
PLP +++ Q YA H D+ +H P F G P S + T L
Sbjct: 217 PLPAYTIQGQ---YAIPHPDLTKLHQLAMQQTP-FTSLGQTTPAFPGVDASSQASTHELT 272
Query: 323 CHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
++ ++Q +G IK+ A+ G+ DR I I+G PA+
Sbjct: 273 IPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPAN 322
Score = 78 (32.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 26/100 (26%), Positives = 42/100 (42%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ S A I + + P E +V I G
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINV-SEGNCP------ERIVTITGPT 67
Query: 461 EAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSP 500
+A+ +A I + S P L V P
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVP 107
Score = 76 (31.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 27 QKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETV 85
+ + S +Q + P + R++ P S+ +IGK G + ++ + TG ++V + +
Sbjct: 83 EDIINSMSNSQATSKPP--VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDML 140
Query: 86 SGSDERLVVIEAS 98
S ER V I +
Sbjct: 141 PNSTERAVTISGT 153
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 158 (60.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 45/157 (28%), Positives = 80/157 (50%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAIPDNR---EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A L+ + I ++ ++ + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 122 (48.0 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 52/184 (28%), Positives = 87/184 (47%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSK--FVLRLLV 193
+++EGS + T + KA ++ ++ E + + +T +SK LRL+V
Sbjct: 48 NISEGSCPERIVTITGPTDAIFKAFSMI---ALKFEEDINASMTNSTVTSKPPVTLRLVV 104
Query: 194 LSTQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALKL 241
++Q G L+GKGG IK+I D LP +++ V I+G D + + +K
Sbjct: 105 PASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQ 161
Query: 242 ISHQLLDNSPRDHESIPGNPTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPM--P 295
I +L++ P+ +IP P S P+ + + QG YA H D+ +H L M P
Sbjct: 162 ICVVMLESPPKG-ATIPYRPKPASAPIIFAGGQAFTIQGQ-YAIPHPDLTKLHQLAMQHP 219
Query: 296 PSIP 299
P P
Sbjct: 220 PFTP 223
Score = 99 (39.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 44/173 (25%), Positives = 76/173 (43%)
Query: 213 DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPL---P 269
D LP +++ V I+G D + + +K I +L++ P+ +IP P S P+
Sbjct: 136 DMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYRPKPASAPIIFAG 191
Query: 270 DHSVSSQGAPYATGHRDVADIH-LPM--PP------SIPKFHESGV-LDRPKPSPEILTF 319
+ + QG YA H D+ +H L M PP + P F + LD P+ +
Sbjct: 192 GQAFTIQGQ-YAIPHPDLTKLHQLAMQHPPFTPLGQTTPGFPVPHIGLDATSPTS---SH 247
Query: 320 RLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
L ++ ++Q +G IK+ A G+ +R + I+G PA+
Sbjct: 248 ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPAN 300
Score = 88 (36.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQA 654
I G G+ + +IRQ+S A+I I + G+ E + I+G+P AQ LI A
Sbjct: 259 IIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINA 310
Score = 85 (35.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTR 473
+A+ +A I +
Sbjct: 66 DAIFKAFSMIALK 78
Score = 83 (34.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D T L + ++ IGC++G+ GS I E+R++SGA I+I + E V
Sbjct: 239 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE-----GSAERQVT 293
Query: 456 INGEFEAVQEALFQITTR 473
I G + A + I R
Sbjct: 294 ITGSPANISLAQYLINAR 311
Score = 78 (32.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP+
Sbjct: 114 GKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 76 (31.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVVIEAS 98
+ R++ P S+ +IGK G + +I + TG ++V + + S ER V I +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 67 (28.6 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS-DERLV 93
SK GG+ R+L ++ +IGK GE + ++ +++G I + E GS ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE---GSCPERIV 59
Query: 94 VI 95
I
Sbjct: 60 TI 61
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 147 (56.8 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 51/212 (24%), Positives = 97/212 (45%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPT 493
+++ G D +P + E + I G +++ E + QI + + + P P
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPK 185
Query: 494 FLDQVSPFPSFIGRRELSPPGMYSNFGPSFHK 525
SP F G + + G Y+ P K
Sbjct: 186 --PSSSPV-IFAGGQAYTIQGQYAIPQPDLTK 214
Score = 113 (44.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 56/230 (24%), Positives = 98/230 (42%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESI 257
D LP +++ + I G ++ + +K ++ + L SP +I
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 258 PGNPTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH 302
P P S P+ + + QG YA D+ +H L M S P H
Sbjct: 181 PYRPKPSSSPVIFAGGQAYTIQGQ-YAIPQPDLTKLHQLAMQQSHFPMTH 229
Score = 99 (39.9 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 259 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 316
Score = 96 (38.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 239 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 293
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 294 ITGSAASISLAQYLINVRL 312
Score = 89 (36.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 39/167 (23%), Positives = 68/167 (40%)
Query: 213 DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESIPGNPTGPSHPL- 268
D LP +++ + I G ++ + +K ++ + L SP +IP P S P+
Sbjct: 136 DMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVI 192
Query: 269 --PDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVLDRPKPSPEILTFRLLC 323
+ + QG YA D+ +H L M S P H +G S + + L
Sbjct: 193 FAGGQAYTIQGQ-YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTI 251
Query: 324 HDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++ ++Q +G IK+ V G+ DR + I+G A
Sbjct: 252 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 298
Score = 80 (33.2 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 163 (62.4 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 69/277 (24%), Positives = 117/277 (42%)
Query: 118 NGREEASVAD---ESDNKKEDSVNEGSVLMDGLNSEK------ETSKVQKALLLVFERMV 168
+G+E S+ ES K + G + +G E+ T+ + KA ++ +++
Sbjct: 21 HGKEVGSIIGKKGESVKKMREESGAGINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 80
Query: 169 EVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI------------DKLP 216
EV + + + LRL+V ++Q G L+GKGGC IK+I D LP
Sbjct: 81 EVI-SSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP 139
Query: 217 TCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQ 276
+++ + I G ++ + +K I +LD P +IP P S P+ + Q
Sbjct: 140 N---STERAITIAGIPQSIIECVKQICVVMLD-PPSKGVTIPYRPKPSSSPVIFAGGTIQ 195
Query: 277 GAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVLDRPKPSPEILTFRLLCHDERXXXXXX 333
G YA D+ +H L M S P H +G S + + L ++
Sbjct: 196 GQ-YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGSLDASAQTTSHELTIPNDLIGCIIG 254
Query: 334 XXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ DR + I+G A
Sbjct: 255 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 291
Score = 143 (55.4 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 99 (39.9 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 252 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 309
Score = 96 (38.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 232 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 286
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 287 ITGSAASISLAQYLINVRL 305
Score = 79 (32.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 76 (31.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 24 EKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE- 82
+K +++ N + S P + R++ P S+ +IGK G + +I + TG ++V
Sbjct: 77 DKLEEVISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
Query: 83 ETVSGSDERLVVI 95
+ + S ER + I
Sbjct: 136 DMLPNSTERAITI 148
Score = 65 (27.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISE--GNCPERIITLAGPTN 66
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 156 (60.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 70/296 (23%), Positives = 125/296 (42%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKG-VTIPYR 179
Query: 261 PTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVLDRPKPSP 314
P S P+ + + QG YA D+ +H L M S P H +G S
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQ-YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASA 238
Query: 315 EILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPA 370
+ + L ++ ++Q +G IK+ V G+ DR + I+G A
Sbjct: 239 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 294
Score = 143 (55.4 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 99 (39.9 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 255 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 312
Score = 96 (38.9 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 235 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 289
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 290 ITGSAASISLAQYLINVRL 308
Score = 80 (33.2 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 143 (55.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 125 (49.1 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 69/300 (23%), Positives = 118/300 (39%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L+ +S P
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLS---QSPPKG 177
Query: 261 PTGPSHPLPDHS-VSSQGAPYATGHR-DVADIHLPMPPSIPKFH--ES------GVLDRP 310
T P P P S V G H+ + H PM F ES G
Sbjct: 178 VTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGL 237
Query: 311 KPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPA 370
S + + L ++ ++Q +G IK+ V G+ DR + I+G A
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 297
Score = 99 (39.9 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 258 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 315
Score = 96 (38.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 238 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 292
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 293 ITGSAASISLAQYLINVRL 311
Score = 80 (33.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 143 (55.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 126 (49.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 60/242 (24%), Positives = 105/242 (43%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKG-VTIPYR 179
Query: 261 PTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVLDRPKPSP 314
P S P+ + + QG YA D+ +H L M S P H +G SP
Sbjct: 180 PKPSSSPVIFAGGQAYTIQGQ-YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSP 238
Query: 315 EI 316
E+
Sbjct: 239 EV 240
Score = 99 (39.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 268 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 325
Score = 96 (38.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 248 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 302
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 303 ITGSAASISLAQYLINVRL 321
Score = 80 (33.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
Score = 60 (26.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ DR + I+G A
Sbjct: 279 IRQMSGAQIKIANPVEGSTDRQVTITGSA 307
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 143 (55.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/188 (23%), Positives = 84/188 (44%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKG-VTIPYR 179
Query: 261 PTGPSHPL 268
P S P+
Sbjct: 180 PKPSSSPV 187
Score = 99 (39.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 286 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 343
Score = 96 (38.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 266 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 320
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 321 ITGSAASISLAQYLINVRL 339
Score = 80 (33.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 76 (31.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/123 (24%), Positives = 48/123 (39%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 206 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 262
Query: 308 DRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVIS 367
S + + L ++ ++Q +G IK+ V G+ DR + I+
Sbjct: 263 AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
Query: 368 GPA 370
G A
Sbjct: 323 GSA 325
Score = 74 (31.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 143 (55.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 103 (41.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 45/191 (23%), Positives = 83/191 (43%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESI 257
D LP +++ + I G ++ + +K ++ + L SP +I
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 258 PGNPTGPSHPL 268
P P S P+
Sbjct: 181 PYRPKPSSSPV 191
Score = 99 (39.9 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 290 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 347
Score = 96 (38.9 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 270 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 324
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 325 ITGSAASISLAQYLINVRL 343
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/123 (24%), Positives = 48/123 (39%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 210 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 266
Query: 308 DRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVIS 367
S + + L ++ ++Q +G IK+ V G+ DR + I+
Sbjct: 267 AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 326
Query: 368 GPA 370
G A
Sbjct: 327 GSA 329
Score = 74 (31.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 143 (55.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 45/188 (23%), Positives = 84/188 (44%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKG-VTIPYR 179
Query: 261 PTGPSHPL 268
P S P+
Sbjct: 180 PKPSSSPV 187
Score = 99 (39.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 299 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 356
Score = 96 (38.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 279 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 333
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 334 ITGSAASISLAQYLINVRL 352
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 32/136 (23%), Positives = 51/136 (37%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 206 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 262
Query: 308 DRPKPSPEILTF--------RLLCHD-----ERXXXXXXXXXXXXRSLKQETGCDIKVME 354
SPE+ + + H+ + ++Q +G IK+
Sbjct: 263 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 322
Query: 355 AVSGTEDRLIVISGPA 370
V G+ DR + I+G A
Sbjct: 323 PVEGSTDRQVTITGSA 338
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 143 (55.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 103 (41.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 45/191 (23%), Positives = 83/191 (43%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESI 257
D LP +++ + I G ++ + +K ++ + L SP +I
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 258 PGNPTGPSHPL 268
P P S P+
Sbjct: 181 PYRPKPSSSPV 191
Score = 99 (39.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 302 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 359
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 336
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 337 ITGSAASISLAQYLINVRL 355
Score = 80 (33.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
Score = 63 (27.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 32/135 (23%), Positives = 51/135 (37%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 210 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 266
Query: 308 DRPKPSPEILTF-------RLLCHD-----ERXXXXXXXXXXXXRSLKQETGCDIKVMEA 355
SPE+ + + H+ + ++Q +G IK+
Sbjct: 267 GIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 326
Query: 356 VSGTEDRLIVISGPA 370
V G+ DR + I+G A
Sbjct: 327 VEGSTDRQVTITGSA 341
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 143 (55.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
Score = 103 (41.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 45/191 (23%), Positives = 83/191 (43%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESI 257
D LP +++ + I G ++ + +K ++ + L SP +I
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 258 PGNPTGPSHPL 268
P P S P+
Sbjct: 181 PYRPKPSSSPV 191
Score = 99 (39.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 302 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 359
Score = 96 (38.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 282 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 336
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 337 ITGSAASISLAQYLINVRL 355
Score = 80 (33.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 74 (31.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 78 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 136
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 137 MLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 66
Score = 63 (27.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 32/135 (23%), Positives = 51/135 (37%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 210 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 266
Query: 308 DRPKPSPEILTF-------RLLCHD-----ERXXXXXXXXXXXXRSLKQETGCDIKVMEA 355
SPE+ + + H+ + ++Q +G IK+
Sbjct: 267 GIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 326
Query: 356 VSGTEDRLIVISGPA 370
V G+ DR + I+G A
Sbjct: 327 VEGSTDRQVTITGSA 341
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 129 (50.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 377 SAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIR 436
SAP +++ A P NR Q + V+++ IGC++GKGG+ IAE+R++SGA IR
Sbjct: 261 SAPAALAALAGSQLRTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIR 320
Query: 437 ILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
I ++ + + + I+G ++V A + I
Sbjct: 321 ISNCEE--REGGNTDRTITISGNPDSVALAQYLI 352
Score = 112 (44.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 35/158 (22%), Positives = 71/158 (44%)
Query: 314 PEI-LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHP 372
P + LT RL+ + ++E+G I + + +R++ +SG +
Sbjct: 20 PSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTTNA 77
Query: 373 DDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSG 432
I + + + + Q + RL+V ++Q G L+GK GS I E+R+ +G
Sbjct: 78 ---IFSAFTLITKKFEEFNDVGKVGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTG 133
Query: 433 AYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
I++ + +P + E V ++G E + + ++QI
Sbjct: 134 CSIQV-ASEMLP---NSTERAVTLSGSAEQITQCIYQI 167
Score = 93 (37.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 33/127 (25%), Positives = 61/127 (48%)
Query: 175 EVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL---------ASDEV 225
E D ++ +RL+V ++Q G L+GK G IK+I + C++ +++
Sbjct: 91 EFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERA 150
Query: 226 VQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP----TGPSHPLPDHSVSSQGAPYA 281
V ++G + + + + I +L++ PR +IP P TGP + + QG YA
Sbjct: 151 VTLSGSAEQITQCIYQICLVMLESPPRG-ATIPYRPKPQVTGPVILANGQAFTIQGN-YA 208
Query: 282 TGHRDVA 288
++VA
Sbjct: 209 VPTQEVA 215
Score = 87 (35.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV-EETVSGSDERLVVIEAS 98
I R++ P S+ +IGK G + +I Q TG +I+V E + S ER V + S
Sbjct: 103 IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGS 156
Score = 80 (33.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITIT---DPKPGATETVIIISGTPEQTHAAQSLIQAFV 656
I G+ G + +IRQIS A I I+ + + G T+ I ISG P+ AQ LI V
Sbjct: 300 IIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSV 356
Score = 69 (29.3 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R++ ++ +IGK GE++++ +++G I + + ER+V + + N
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIVTVSGTTN 76
Score = 50 (22.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 184 SSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL-ASD-----EVVQITGEVDTVRK 237
S +RL++ +VG ++GK G ++ + + + SD +V ++G + +
Sbjct: 21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFS 80
Query: 238 ALKLIS 243
A LI+
Sbjct: 81 AFTLIT 86
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 140 (54.3 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 43/157 (27%), Positives = 77/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + ++++G I + E +R++ I+GP D
Sbjct: 14 LTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTITGPT--DAIF 69
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + + I ++ ++ + V RL+V ++Q G L+GKGGS I E+R+ +GA
Sbjct: 70 KAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 162
Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 44/170 (25%), Positives = 76/170 (44%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T + KA ++ + E + +++ T LRL+V ++Q G L+GKGG IK+I
Sbjct: 65 TDAIFKAFAMIAYKFEE-DITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 179
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRP 310
P S P+ + + G Y T A +P P + K H+ + P
Sbjct: 180 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTP 221
Score = 99 (39.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G + +IRQ+S A+I I + G++E I I+GTP AQ LI A + SE
Sbjct: 276 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSE 332
Score = 85 (35.0 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 369 PAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQ-IGCLLGKGGSIIAEM 427
PA P +++ P + Q + ++ + T L N IGC++G+ G+ I E+
Sbjct: 230 PAFPGEKL--PLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 287
Query: 428 RKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
R++SGA I+I + +E + I G + A + I RL
Sbjct: 288 RQMSGAQIKIANATE-----GSSERQITITGTPANISLAQYLINARL 329
Score = 78 (32.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N + S P + R++ P S+ +IGK G + +I + TG ++V + + S ER V
Sbjct: 89 NSTATSKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 95 IEAS 98
I +
Sbjct: 148 ISGT 151
Score = 73 (30.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + R+ SGA I I + P E +V I G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINI-SEGNCP------ERIVTITGPT 65
Query: 461 EAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSP 500
+A+ +A I + S P L V P
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVP 105
Score = 70 (29.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 189 LRLLVLSTQVGCLLGKGGC--VIKQIDKLPTCALAS----DEVVQITGEVDTVRKALKLI 242
+RLL+ +VG ++GK GC V+ + ++ + +V ITG D + KA +I
Sbjct: 16 IRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGNCPERIVTITGPTDAIFKAFAMI 75
Query: 243 SHQLLDNSPRDHESIPGNPTGPSHP 267
+++ + D + N T S P
Sbjct: 76 AYKFEE----DITNSMSNSTATSKP 96
Score = 59 (25.8 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISG-PAH 371
++Q +G IK+ A G+ +R I I+G PA+
Sbjct: 287 IRQMSGAQIKIANATEGSSERQITITGTPAN 317
Score = 47 (21.6 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 39 SKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVV 94
SK GG+ R+L ++ +IGK G + + +G I + E ER+V
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISE--GNCPERIVT 60
Query: 95 I 95
I
Sbjct: 61 I 61
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 143 (55.4 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 70/297 (23%), Positives = 126/297 (42%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ E++ E + + +++ T LR++V ++Q G L+GKGGC IK+I
Sbjct: 65 TTAIFKAFSMIIEKLEE-DISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEI 123
Query: 213 ------------DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
D LP +++ + I G ++ + +K I +L++ P+ +IP
Sbjct: 124 RESTGAQVQVAGDMLPN---STERAITIAGTPLSIIECVKQICVVMLESPPKG-VTIPYR 179
Query: 261 PTGPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFHES-GVLDRPKPSP 314
P P+ + + QG +A D+ +H L M S P S G S
Sbjct: 180 PKPSGSPVIFAGGQAYAVQGQ-HAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDASA 238
Query: 315 EILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG-PA 370
+ + L ++ ++Q +G IK+ V G+ DR + I+G PA
Sbjct: 239 QTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPA 295
Score = 135 (52.6 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 40/157 (25%), Positives = 78/157 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTTAI--F 69
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V R++V ++Q G L+GKGG I E+R+ +GA
Sbjct: 70 KAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGTPLSIIECVKQI 162
Score = 99 (39.9 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G+++ + I+G+P A+ LI A + SE
Sbjct: 255 IIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPASISLAEYLINARLSSE 311
Score = 91 (37.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 235 DASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSSDRQVT- 289
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 290 ITGSPASISLAEYLINARL 308
Score = 79 (32.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 TAIFKAFSMIIEKL 79
Score = 78 (32.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 27 QKLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE- 82
+KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V
Sbjct: 77 EKLEEDISSSMSNSTATSKPP-VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
Query: 83 ETVSGSDERLVVI 95
+ + S ER + I
Sbjct: 136 DMLPNSTERAITI 148
Score = 66 (28.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNK--KE 103
+ R+L ++ +IGK GE + ++ +++G I + E ER++ + K
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTTAIFKA 71
Query: 104 TS---ENLEASIERSENN 118
S E LE I S +N
Sbjct: 72 FSMIIEKLEEDISSSMSN 89
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 42/156 (26%), Positives = 76/156 (48%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + + + +R + RL+V + Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTL-RLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G ++V E + QI
Sbjct: 131 VQVAG-DMLP---NSTERAITIAGVPQSVTECVKQI 162
Score = 108 (43.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EG+ + T+ + KA ++ +++ E + + + + LRL+V +
Sbjct: 48 NISEGNCPERIITLTGPTNAIFKAFAMIIDKLEE-DINSSMTNSTAASRPPVTLRLVVPA 106
Query: 196 TQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVRKALK--- 240
TQ G L+GKGGC IK+I D LP +++ + I G +V + +K
Sbjct: 107 TQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGVPQSVTECVKQIC 163
Query: 241 LISHQLLDNSPRDHE-SIPGNPTGPSHPL 268
L+ + L SP+ +IP P S P+
Sbjct: 164 LVMLETLSQSPQGRVMTIPYQPMPASSPV 192
Score = 93 (37.8 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + +N IGC++G+ G+ I E+R++SGA I+I P S +V
Sbjct: 275 DASTQTTH-ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQVT- 328
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 329 ITGSAASISLAQYLINARL 347
Score = 90 (36.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G GA + +IRQ+S A+I I +P G++ + I+G+ AQ LI A + SE
Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 77 (32.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +R+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERIITLTGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 54 (24.1 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPA 370
++Q +G IK+ V G+ R + I+G A
Sbjct: 305 IRQMSGAQIKIANPVEGSSGRQVTITGSA 333
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 77 VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENN 118
VT+ + + G + ++ + ++ K E A I SE N
Sbjct: 12 VTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN 53
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 126 (49.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 67/285 (23%), Positives = 118/285 (41%)
Query: 118 NGREEASVAD---ESDNK-KEDS-----VNEGSVLMDGLNSEKETSKVQKALLLVFERMV 168
+G+E S+ ES K +E+S ++EG+ + T+ + KA ++ +++
Sbjct: 2 HGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLE 61
Query: 169 EVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI------------DKLP 216
E + + + + LRL+V ++Q G L+GKGGC IK+I D LP
Sbjct: 62 E-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP 120
Query: 217 TCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHS-VSS 275
+++ + I G ++ + +K I +L+ +S P T P P P S V
Sbjct: 121 N---STERAITIAGIPQSIIECVKQICVVMLETLS---QSPPKGVTIPYRPKPSSSPVIF 174
Query: 276 QGAPYATGHR-DVADIHLPMPPSIPKFHESGV-LDRPK--------PSPEILTFRLLCHD 325
G H+ + H PM F SG+ P+ S + + L +
Sbjct: 175 AGGQLTKLHQLAMQQSHFPMTHGNTGF--SGIESSSPEVKGYWGLDASAQTTSHELTIPN 232
Query: 326 ERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPA 370
+ ++Q +G IK+ V G+ DR + I+G A
Sbjct: 233 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 277
Score = 124 (48.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 35/134 (26%), Positives = 74/134 (55%)
Query: 340 RSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNRE 399
+ +++E+G I + E +R+I ++GP + + A + +++ I+ ++ ++
Sbjct: 18 KKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAM--IIDKLEEDISSSMTNSTA 73
Query: 400 QT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
+ V RL+V ++Q G L+GKGG I E+R+ +GA +++ G D +P + E + I
Sbjct: 74 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITI 129
Query: 457 NGEFEAVQEALFQI 470
G +++ E + QI
Sbjct: 130 AGIPQSIIECVKQI 143
Score = 99 (39.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 238 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 295
Score = 96 (38.9 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 218 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 272
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 273 ITGSAASISLAQYLINVRL 291
Score = 74 (31.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 28 KLAGDYSE---NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-E 83
KL D S N + S P + R++ P S+ +IGK G + +I + TG ++V +
Sbjct: 59 KLEEDISSSMTNSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 117
Query: 84 TVSGSDERLVVI 95
+ S ER + I
Sbjct: 118 MLPNSTERAITI 129
Score = 64 (27.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQIT 471
++G ++GK G + +MR+ SGA I I + P E ++ + G A+ +A I
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNAIFKAFAMII 57
Query: 472 TRL 474
+L
Sbjct: 58 DKL 60
Score = 61 (26.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 56 KIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
++ +IGK GE + ++ +++G I + E ER++ + N
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTN 47
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 142 (55.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 76/306 (24%), Positives = 121/306 (39%)
Query: 376 ISAPQDAVLRVQTRIARAIPDN--REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
++A + VL + + + DN R+LV + G L+G+ GS I E+R+ A
Sbjct: 97 VTADEKTVLNILKDVLPRLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSA 156
Query: 434 YIRILGKDQIPKCASENEEVVLI-NGEFEAVQEALFQITTRLRHHFFRDA----FPSINR 488
++I CA + + VLI +GE + V + ++ L+ + + P+ N
Sbjct: 157 RLKIF-----TGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFN- 210
Query: 489 PLNPTFLDQVSPFPSFI------GRRELSPP--GMYSNFGPSFHKFDAVXXXXXXXSFHP 540
+P+ + FP + R +P G GP + A+ SF
Sbjct: 211 -YDPSNISDYGGFPGNMPAGGPPNNRGPAPQRGGQGPPGGPRSYG-GAITQGGGQRSFEA 268
Query: 541 HDDHSAFMHHIHRPGMPPHMPDMKPWGPQGLMEVGGP--MGF---PDFXXXXXXXXXXXX 595
D F PG P P P + G P G+ P
Sbjct: 269 GD----FQQFRGGPGPVPGYAMSAPGYPPQQGQFGAPNNAGYGYGPGGGGPVTTAQVTIP 324
Query: 596 XXXXXXIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAF 655
II G G + +IRQ S A+IT+ + G E +I I GT +Q H+AQ L+Q
Sbjct: 325 SDLGGTII-GRGGERIARIRQESGAQITL-EQSNGQPERIITIKGTEQQIHSAQYLLQQC 382
Query: 656 VMSETE 661
V + T+
Sbjct: 383 VRNSTQ 388
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 172 PETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQID-------KLPTCALASDE 224
P+T+ E + KF +RLLV S G ++GKGG IK++ ++P + +
Sbjct: 36 PKTD-GFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD-SNTPER 93
Query: 225 VVQITGEVDTVRKALKLISHQLLDN-SPRD 253
V +T + TV LK + +L DN S RD
Sbjct: 94 VCTVTADEKTVLNILKDVLPRLEDNFSERD 123
Score = 76 (31.8 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMM 68
KR HD+D+ + G+ K K G ++E F R+L +IGK GE +
Sbjct: 19 KREHDNDDG-DRTGRHKRPKTDG-FTEAIQQGKFE----VRLLVSSKSAGAIIGKGGENI 72
Query: 69 SQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGRE 121
++ + ++V + S + ER+ + A + K L+ + R E+N E
Sbjct: 73 KRLRAEFNAHVQVPD--SNTPERVCTVTADE--KTVLNILKDVLPRLEDNFSE 121
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 142 (55.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 76/306 (24%), Positives = 121/306 (39%)
Query: 376 ISAPQDAVLRVQTRIARAIPDN--REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
++A + VL + + + DN R+LV + G L+G+ GS I E+R+ A
Sbjct: 97 VTADEKTVLNILKDVLPRLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSA 156
Query: 434 YIRILGKDQIPKCASENEEVVLI-NGEFEAVQEALFQITTRLRHHFFRDA----FPSINR 488
++I CA + + VLI +GE + V + ++ L+ + + P+ N
Sbjct: 157 RLKIF-----TGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFN- 210
Query: 489 PLNPTFLDQVSPFPSFI------GRRELSPP--GMYSNFGPSFHKFDAVXXXXXXXSFHP 540
+P+ + FP + R +P G GP + A+ SF
Sbjct: 211 -YDPSNISDYGGFPGNMPAGGPPNNRGPAPQRGGQGPPGGPRSYG-GAITQGGGQRSFEA 268
Query: 541 HDDHSAFMHHIHRPGMPPHMPDMKPWGPQGLMEVGGP--MGF---PDFXXXXXXXXXXXX 595
D F PG P P P + G P G+ P
Sbjct: 269 GD----FQQFRGGPGPVPGYAMSAPGYPPQQGQFGAPNNAGYGYGPGGGGPVTTAQVTIP 324
Query: 596 XXXXXXIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAF 655
II G G + +IRQ S A+IT+ + G E +I I GT +Q H+AQ L+Q
Sbjct: 325 SDLGGTII-GRGGERIARIRQESGAQITL-EQSNGQPERIITIKGTEQQIHSAQYLLQQC 382
Query: 656 VMSETE 661
V + T+
Sbjct: 383 VRNSTQ 388
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 172 PETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQID-------KLPTCALASDE 224
P+T+ E + KF +RLLV S G ++GKGG IK++ ++P + +
Sbjct: 36 PKTD-GFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD-SNTPER 93
Query: 225 VVQITGEVDTVRKALKLISHQLLDN-SPRD 253
V +T + TV LK + +L DN S RD
Sbjct: 94 VCTVTADEKTVLNILKDVLPRLEDNFSERD 123
Score = 76 (31.8 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMM 68
KR HD+D+ + G+ K K G ++E F R+L +IGK GE +
Sbjct: 19 KREHDNDDG-DRTGRHKRPKTDG-FTEAIQQGKFE----VRLLVSSKSAGAIIGKGGENI 72
Query: 69 SQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGRE 121
++ + ++V + S + ER+ + A + K L+ + R E+N E
Sbjct: 73 KRLRAEFNAHVQVPD--SNTPERVCTVTADE--KTVLNILKDVLPRLEDNFSE 121
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 103 (41.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 34/147 (23%), Positives = 76/147 (51%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRISA-PQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ +I G + + + + + +A+ P +
Sbjct: 74 LQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVS 133
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT + +++V ++ G ++GKGG+ + + + SGA++++ Q P +
Sbjct: 134 ILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGIN 190
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E ++A+ I +++
Sbjct: 191 LQERVVTVSGEPEQNRKAVELIIQKIQ 217
Score = 102 (41.0 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 398 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 454
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 455 ATQAAQYLITQRITY 469
Score = 86 (35.3 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 28/128 (21%), Positives = 61/128 (47%)
Query: 165 ERMVEVEPETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIK----------QID 213
+ + + EP + + Q + ++++V ++ G ++GKGG +K Q+
Sbjct: 124 QNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 183
Query: 214 KLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSV 273
+ P + VV ++GE + RKA++LI Q + P+ + + + P+ + +
Sbjct: 184 QKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNP 242
Query: 274 SSQGAPYA 281
+ G+PYA
Sbjct: 243 T--GSPYA 248
Score = 79 (32.9 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 47 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 104
Score = 77 (32.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 26 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 76
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 411 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
Score = 62 (26.9 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 209
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 210 -ELIIQKIQEDPQSG 223
Score = 41 (19.5 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 344 QE-TGCDIKVM---EAVSGTEDRLIVISG-PA 370
QE TG I++ E V GT +R + I+G PA
Sbjct: 423 QELTGARIQISKKGEFVPGTRNRKVTITGTPA 454
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 154 (59.3 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 49/138 (35%), Positives = 75/138 (54%)
Query: 347 GCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARA-------IPDNRE 399
GCD +V+ S +E+R + +D + DA+ +V + DN E
Sbjct: 9 GCDERVVTIYSNSEERNRIEDDN---EDFVCPAFDALFKVHDMVVVEEFDDDDDYNDNDE 65
Query: 400 ----QTVMT-RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS--ENEE 452
QTV+T R+LV S+QIG L+GKGG II +R + A IR+ D +P CA ++E
Sbjct: 66 YSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN-DNLPMCALALSHDE 124
Query: 453 VVLINGEFEAVQEALFQI 470
++ I G+ AV+EAL+Q+
Sbjct: 125 LLQIIGDPSAVREALYQV 142
Score = 120 (47.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 40/112 (35%), Positives = 60/112 (53%)
Query: 159 ALLLVFERMV--EVEPETEVADQENTKSSKFVL--RLLVLSTQVGCLLGKGGCVIK---- 210
AL V + +V E + + + D + + V+ R+LV S Q+G L+GKGG +I+
Sbjct: 41 ALFKVHDMVVVEEFDDDDDYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRN 100
Query: 211 ----QI----DKLPTCALA--SDEVVQITGEVDTVRKALKLISHQLLDNSPR 252
QI D LP CALA DE++QI G+ VR+AL ++ L +N R
Sbjct: 101 DTNAQIRVRNDNLPMCALALSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 51 (23.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 79 IRVEETVSGSDERLVVIEASDNKKETSEN 107
+RV E + G DER+V I ++ ++ E+
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIED 29
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 104 (41.7 bits), Expect = 9.0e-09, Sum P(3) = 9.0e-09
Identities = 34/147 (23%), Positives = 76/147 (51%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRISA-PQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ +I G + + + + + +A+ P +
Sbjct: 75 LQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVS 134
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT + +++V ++ G ++GKGG+ + + + SGA++++ Q P +
Sbjct: 135 ILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGIN 191
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E ++A+ I +++
Sbjct: 192 LQERVVTVSGEPEQNRKAVELIIQKIQ 218
Score = 102 (41.0 bits), Expect = 4.5e-10, Sum P(3) = 4.5e-10
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 399 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 455
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 456 ATQAAQYLITQRITY 470
Score = 86 (35.3 bits), Expect = 4.5e-10, Sum P(3) = 4.5e-10
Identities = 28/128 (21%), Positives = 61/128 (47%)
Query: 165 ERMVEVEPETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIK----------QID 213
+ + + EP + + Q + ++++V ++ G ++GKGG +K Q+
Sbjct: 125 QNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLS 184
Query: 214 KLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSV 273
+ P + VV ++GE + RKA++LI Q + P+ + + + P+ + +
Sbjct: 185 QKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNP 243
Query: 274 SSQGAPYA 281
+ G+PYA
Sbjct: 244 T--GSPYA 249
Score = 79 (32.9 bits), Expect = 4.5e-10, Sum P(3) = 4.5e-10
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 105
Score = 77 (32.2 bits), Expect = 9.0e-09, Sum P(3) = 9.0e-09
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 77
Score = 73 (30.8 bits), Expect = 9.0e-09, Sum P(3) = 9.0e-09
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 412 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 464
Score = 41 (19.5 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 344 QE-TGCDIKVM---EAVSGTEDRLIVISG-PA 370
QE TG I++ E V GT +R + I+G PA
Sbjct: 424 QELTGARIQISKKGEFVPGTRNRKVTITGTPA 455
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 117 (46.2 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 38/147 (25%), Positives = 77/147 (52%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRI-SAPQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ ++ G A + + S + V + + + N
Sbjct: 58 LQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVN 117
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT M +L+V ++ G ++GKGG+ + + + SGA++++ Q P+ +
Sbjct: 118 ILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGIN 174
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E V +A+ I +++
Sbjct: 175 LQERVVTVSGEPEQVHKAVSAIVQKVQ 201
Score = 97 (39.2 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N V I G
Sbjct: 408 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--GTRNRRVT-ITGSPA 464
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 465 ATQAAQYLISQRVTY 479
Score = 88 (36.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 369 PAHPDDR---ISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIA 425
P PD R + P + V ++ E ++L+ S G ++GKGG I
Sbjct: 3 PEAPDSRKRPLETPPEVVCTKRSNTGE------EGEYFLKVLIPSYAAGSIIGKGGQTIV 56
Query: 426 EMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLR 475
+++K +GA I++ KD P E V L+ G EA+ I ++R
Sbjct: 57 QLQKETGATIKLSKSKDFYP---GTTERVCLVQGTAEALNAVHSFIAEKVR 104
Score = 86 (35.3 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T + + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 119 LQPQTTM-NPDRAKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 173
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV ++GE + V KA+ I Q + P+ + + + P+ + + + G+P
Sbjct: 174 NLQERVVTVSGEPEQVHKAVSAIV-QKVQEDPQSSSCLNISYANVAGPVANSNPT--GSP 230
Query: 280 YATGHRDVADIHLPMPPSIPKFHESGVL 307
YA+ AD+ LP + SG+L
Sbjct: 231 YASP----ADV-LPAAAAASAAAASGLL 253
Score = 82 (33.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ H A S I V +
Sbjct: 144 LIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 203
Query: 660 TETT 663
+++
Sbjct: 204 PQSS 207
Score = 79 (32.9 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 10 KRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 60
Score = 78 (32.5 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +++ +
Sbjct: 31 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 88
Score = 70 (29.7 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI V E
Sbjct: 421 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 480
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 124 (48.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 49/193 (25%), Positives = 81/193 (41%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + H S+ H+ G PE L +
Sbjct: 388 RGAPPAAPYHPFTT-HSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 446
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 447 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 502
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 503 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 558
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 559 VRIIGHFFASQTA 571
Score = 100 (40.3 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 39/160 (24%), Positives = 63/160 (39%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 330
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G LSPP
Sbjct: 331 VEACASAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLSPPAGP 387
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F S +PH F HH P
Sbjct: 388 RGAPPAAPYHPF--TTHSGYFSSLYPHHQFGPFPHHHSYP 425
Score = 93 (37.8 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 157 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGTSQARQIDFPLRILVPTQFVGAIIGKEG 213
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 214 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 269
Query: 124 SVADE 128
+A+E
Sbjct: 270 KLAEE 274
Score = 77 (32.2 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 442 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 492
Score = 77 (32.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 426 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 480
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 481 PPEAQFKAQGRIFGKLKEENFF 502
Score = 62 (26.9 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 194 FPLRILVPTQFVGAIIGKEGLTIKNITK 221
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 124 (48.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 49/193 (25%), Positives = 81/193 (41%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + H S+ H+ G PE L +
Sbjct: 394 RGAPPAAPYHPFTT-HSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 452
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 453 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 508
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 509 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 564
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 565 VRIIGHFFASQTA 577
Score = 100 (40.3 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 39/160 (24%), Positives = 63/160 (39%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 279 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 336
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G LSPP
Sbjct: 337 VEACASAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLSPPAGP 393
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F S +PH F HH P
Sbjct: 394 RGAPPAAPYHPF--TTHSGYFSSLYPHHQFGPFPHHHSYP 431
Score = 93 (37.8 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 163 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGTSQARQIDFPLRILVPTQFVGAIIGKEG 219
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 220 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 275
Query: 124 SVADE 128
+A+E
Sbjct: 276 KLAEE 280
Score = 77 (32.2 bits), Expect = 5.6e-10, Sum P(3) = 5.6e-10
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 448 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 498
Score = 77 (32.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 432 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 486
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 487 PPEAQFKAQGRIFGKLKEENFF 508
Score = 62 (26.9 bits), Expect = 7.1e-07, Sum P(3) = 7.1e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 200 FPLRILVPTQFVGAIIGKEGLTIKNITK 227
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 102 (41.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 39/153 (25%), Positives = 78/153 (50%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRI---------SAPQDA------- 382
L++ETG IK+ ++ GT +R+ +I G + + PQ +
Sbjct: 82 LQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSSQKTEPVS 141
Query: 383 VLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ 442
+L+ QT + PD +Q +L+V ++ G ++GKGG+ + + + SGA++++ Q
Sbjct: 142 ILQPQTTVN---PDRIKQA---KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQ 192
Query: 443 IPKCASENEEVVLINGEFEAVQEALFQITTRLR 475
P+ + E VV ++GE E ++A+ I +++
Sbjct: 193 KPEGINLQERVVTVSGEPEQNRKAVEIIVQKIQ 225
Score = 100 (40.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + IP + N +V I G
Sbjct: 411 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIP--GTRNRKVT-ITGSPA 467
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 468 ATQAAQYLISQRITY 482
Score = 83 (34.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 29/108 (26%), Positives = 53/108 (49%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T V + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 143 LQPQTTV-NPDRIKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 197
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIP---GNPTGP 264
+ VV ++GE + RKA+++I Q + P+ + N TGP
Sbjct: 198 NLQERVVTVSGEPEQNRKAVEIIV-QKIQEDPQSSSCLNISYSNITGP 244
Score = 83 (34.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 31/150 (20%), Positives = 65/150 (43%)
Query: 2 SLPLTPSKRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMF-RVLCPVSKIDGV 60
S P S+ P D + ++ +++ + + S + S + G F +VL P +
Sbjct: 14 STPQHLSQSPQMDPDLSD--SRKRPLETPTEASSTKRSNTGEEGEYFLKVLIPSYAAGSI 71
Query: 61 IGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEASDNKKETSENLEASIERS-- 115
IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ + N A R
Sbjct: 72 IGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMP 131
Query: 116 -ENNGREEASVADESDNKKEDSVNEGSVLM 144
+ E S+ D + + +++
Sbjct: 132 QSSQKTEPVSILQPQTTVNPDRIKQAKLIV 161
Score = 72 (30.4 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E E + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 34 KRPLETPTEASSTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 84
Score = 70 (29.7 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI + E
Sbjct: 424 ILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRITYE 483
Score = 40 (19.1 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 344 QE-TGCDIKVM---EAVSGTEDRLIVISG-PA 370
QE TG I++ E + GT +R + I+G PA
Sbjct: 436 QELTGARIQISKKGEFIPGTRNRKVTITGSPA 467
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 117 (46.2 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 38/147 (25%), Positives = 77/147 (52%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRI-SAPQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ ++ G A + + S + V + + + N
Sbjct: 120 LQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVN 179
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT M +L+V ++ G ++GKGG+ + + + SGA++++ Q P+ +
Sbjct: 180 ILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGIN 236
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E V +A+ I +++
Sbjct: 237 LQERVVTVSGEPEQVHKAVSAIVQKVQ 263
Score = 97 (39.2 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N V I G
Sbjct: 470 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--GTRNRRVT-ITGSPA 526
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 527 ATQAAQYLISQRVTY 541
Score = 87 (35.7 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V L+ G EA+
Sbjct: 98 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLVQGTAEAL 154
Query: 464 QEALFQITTRLR 475
I ++R
Sbjct: 155 NAVHSFIAEKVR 166
Score = 86 (35.3 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T + + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 181 LQPQTTM-NPDRAKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 235
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV ++GE + V KA+ I Q + P+ + + + P+ + + + G+P
Sbjct: 236 NLQERVVTVSGEPEQVHKAVSAIV-QKVQEDPQSSSCLNISYANVAGPVANSNPT--GSP 292
Query: 280 YATGHRDVADIHLPMPPSIPKFHESGVL 307
YA+ AD+ LP + SG+L
Sbjct: 293 YASP----ADV-LPAAAAASAAAASGLL 315
Score = 82 (33.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ H A S I V +
Sbjct: 206 LIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 265
Query: 660 TETT 663
+++
Sbjct: 266 PQSS 269
Score = 79 (32.9 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 72 KRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 122
Score = 78 (32.5 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +++ +
Sbjct: 93 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 150
Score = 70 (29.7 bits), Expect = 7.5e-10, Sum P(3) = 7.5e-10
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI V E
Sbjct: 483 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 542
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 103 (41.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 34/147 (23%), Positives = 76/147 (51%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRISA-PQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ +I G + + + + + +A+ P +
Sbjct: 74 LQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVS 133
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT + +++V ++ G ++GKGG+ + + + SGA++++ Q P +
Sbjct: 134 ILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGIN 190
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E ++A+ I +++
Sbjct: 191 LQERVVTVSGEPEQNRKAVELIIQKIQ 217
Score = 102 (41.0 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 398 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 454
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 455 ATQAAQYLITQRITY 469
Score = 83 (34.3 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 165 ERMVEVEPETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIK----------QID 213
+ + + EP + + Q + ++++V ++ G ++GKGG +K Q+
Sbjct: 124 QNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 183
Query: 214 KLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIP---GNPTGP 264
+ P + VV ++GE + RKA++LI Q + P+ + N TGP
Sbjct: 184 QKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGP 236
Score = 79 (32.9 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 47 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 104
Score = 77 (32.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 26 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 76
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 411 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
Score = 62 (26.9 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 150 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 209
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 210 -ELIIQKIQEDPQSG 223
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 118 (46.6 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 40/150 (26%), Positives = 80/150 (53%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI--PD 396
L++ETG IK+ ++ GT +R+ ++ G A + ++A + I +A+ P+
Sbjct: 82 LQKETGATIKLSKSKDFYPGTTERVCLVQGTA---EALNAAHSFIAEKVREIPQAMTKPE 138
Query: 397 --N--REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPK 445
N + QT M +L+V ++ G ++GKGG+ + + + SGA++++ Q P+
Sbjct: 139 VVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPE 195
Query: 446 CASENEEVVLINGEFEAVQEALFQITTRLR 475
+ E VV ++GE E V +A+ I +++
Sbjct: 196 GINLQERVVTVSGEPEQVHKAVSAIVQKVQ 225
Score = 97 (39.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N V I G
Sbjct: 432 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--GTRNRRVT-ITGSPA 488
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 489 ATQAAQYLISQRVTY 503
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V L+ G EA+
Sbjct: 60 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLVQGTAEAL 116
Query: 464 QEALFQITTRLR 475
A I ++R
Sbjct: 117 NAAHSFIAEKVR 128
Score = 86 (35.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T + + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 143 LQPQTTM-NPDRAKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 197
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV ++GE + V KA+ I Q + P+ + + + P+ + + + G+P
Sbjct: 198 NLQERVVTVSGEPEQVHKAVSAIV-QKVQEDPQSSSCLNISYANVAGPVANSNPT--GSP 254
Query: 280 YATGHRDVADIHLPMPPSIPKFHESGVL 307
YA+ AD+ LP + SG+L
Sbjct: 255 YASP----ADV-LPAAAAASAAAASGLL 277
Score = 82 (33.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ H A S I V +
Sbjct: 168 LIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 227
Query: 660 TETT 663
+++
Sbjct: 228 PQSS 231
Score = 80 (33.2 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 40 KSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIE 96
+ + G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +++
Sbjct: 51 RGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 110
Query: 97 AS 98
+
Sbjct: 111 GT 112
Score = 70 (29.7 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI V E
Sbjct: 445 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 504
Score = 58 (25.5 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 186 KFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
++ L++L+ S G ++GKGG I Q+ K
Sbjct: 56 EYFLKVLIPSYAAGSIIGKGGQTIVQLQK 84
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 117 (46.2 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 38/147 (25%), Positives = 77/147 (52%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRI-SAPQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ ++ G A + + S + V + + + N
Sbjct: 30 LQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVN 89
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT M +L+V ++ G ++GKGG+ + + + SGA++++ Q P+ +
Sbjct: 90 ILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGIN 146
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E V +A+ I +++
Sbjct: 147 LQERVVTVSGEPEQVHKAVSAIVQKVQ 173
Score = 97 (39.2 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N V I G
Sbjct: 380 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--GTRNRRVT-ITGSPA 436
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 437 ATQAAQYLISQRVTY 451
Score = 87 (35.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V L+ G EA+
Sbjct: 8 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLVQGTAEAL 64
Query: 464 QEALFQITTRLR 475
I ++R
Sbjct: 65 NAVHSFIAEKVR 76
Score = 86 (35.3 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T + + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 91 LQPQTTM-NPDRAKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 145
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV ++GE + V KA+ I Q + P+ + + + P+ + + + G+P
Sbjct: 146 NLQERVVTVSGEPEQVHKAVSAIV-QKVQEDPQSSSCLNISYANVAGPVANSNPT--GSP 202
Query: 280 YATGHRDVADIHLPMPPSIPKFHESGVL 307
YA+ AD+ LP + SG+L
Sbjct: 203 YASP----ADV-LPAAAAASAAAASGLL 225
Score = 82 (33.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ H A S I V +
Sbjct: 116 LIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 175
Query: 660 TETT 663
+++
Sbjct: 176 PQSS 179
Score = 78 (32.5 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +++ +
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 60
Score = 70 (29.7 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI V E
Sbjct: 393 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 452
Score = 59 (25.8 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 183 KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+ ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 1 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 32
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 117 (46.2 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 38/147 (25%), Positives = 77/147 (52%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRI-SAPQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ ++ G A + + S + V + + + N
Sbjct: 68 LQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVN 127
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT M +L+V ++ G ++GKGG+ + + + SGA++++ Q P+ +
Sbjct: 128 ILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGIN 184
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E V +A+ I +++
Sbjct: 185 LQERVVTVSGEPEQVHKAVSAIVQKVQ 211
Score = 97 (39.2 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N V I G
Sbjct: 418 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--GTRNRRVT-ITGSPA 474
Query: 462 AVQEALFQITTRLRH 476
A Q A + I+ R+ +
Sbjct: 475 ATQAAQYLISQRVTY 489
Score = 87 (35.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V L+ G EA+
Sbjct: 46 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLVQGTAEAL 102
Query: 464 QEALFQITTRLR 475
I ++R
Sbjct: 103 NAVHSFIAEKVR 114
Score = 86 (35.3 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 36/148 (24%), Positives = 70/148 (47%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T + + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 129 LQPQTTM-NPDRAKQAK----LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGI 183
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV ++GE + V KA+ I Q + P+ + + + P+ + + + G+P
Sbjct: 184 NLQERVVTVSGEPEQVHKAVSAIV-QKVQEDPQSSSCLNISYANVAGPVANSNPT--GSP 240
Query: 280 YATGHRDVADIHLPMPPSIPKFHESGVL 307
YA+ AD+ LP + SG+L
Sbjct: 241 YASP----ADV-LPAAAAASAAAASGLL 263
Score = 82 (33.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLIQAFVMSE 659
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ H A S I V +
Sbjct: 154 LIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQED 213
Query: 660 TETT 663
+++
Sbjct: 214 PQSS 217
Score = 79 (32.9 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 38 PSKSFP---GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDER 91
PS P G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER
Sbjct: 32 PSPCAPAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 91
Query: 92 LVVIEAS 98
+ +++ +
Sbjct: 92 VCLVQGT 98
Score = 70 (29.7 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G L + ++++ A+I I+ PG + I+G+P T AAQ LI V E
Sbjct: 431 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 490
Score = 59 (25.8 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 183 KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+ ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 39 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 70
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 124 (48.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + A H S+ H+ G PE L +
Sbjct: 287 RGAPPAPPYHPFAT-HSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 345
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 346 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 401
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 402 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 457
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 458 VRIIGHFFASQTA 470
Score = 93 (37.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 56 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 112
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 113 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 168
Query: 124 SVADE 128
+A+E
Sbjct: 169 KLAEE 173
Score = 86 (35.3 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 38/160 (23%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 172 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 229
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 230 VEACANAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 286
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F A + PH F HH P
Sbjct: 287 RGAPPAPPYHPF-ATHSGYFSSLYPPHQ-FGPFPHHHSYP 324
Score = 77 (32.2 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 341 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 391
Score = 77 (32.2 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 325 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 379
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 380 PPEAQFKAQGRIFGKLKEENFF 401
Score = 62 (26.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 93 FPLRILVPTQFVGAIIGKEGLTIKNITK 120
Score = 37 (18.1 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 261 PTGPSHPLPDHS--VSSQGAPYATG 283
P P HP HS SS P+ G
Sbjct: 291 PAPPYHPFATHSGYFSSLYPPHQFG 315
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 124 (48.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + A H S+ H+ G PE L +
Sbjct: 309 RGAPPAPPYHPFAT-HSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 367
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 368 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 423
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 424 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 479
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 480 VRIIGHFFASQTA 492
Score = 93 (37.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 78 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 134
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 135 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 190
Query: 124 SVADE 128
+A+E
Sbjct: 191 KLAEE 195
Score = 86 (35.3 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 38/160 (23%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 194 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 251
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 252 VEACANAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 308
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F A + PH F HH P
Sbjct: 309 RGAPPAPPYHPF-ATHSGYFSSLYPPHQ-FGPFPHHHSYP 346
Score = 77 (32.2 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 363 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 413
Score = 77 (32.2 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 347 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 401
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 402 PPEAQFKAQGRIFGKLKEENFF 423
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 115 FPLRILVPTQFVGAIIGKEGLTIKNITK 142
Score = 37 (18.1 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 261 PTGPSHPLPDHS--VSSQGAPYATG 283
P P HP HS SS P+ G
Sbjct: 313 PAPPYHPFATHSGYFSSLYPPHQFG 337
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 124 (48.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + A H S+ H+ G PE L +
Sbjct: 313 RGAPPAPPYHPFAT-HSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 371
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 372 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 427
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 428 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 483
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 484 VRIIGHFFASQTA 496
Score = 93 (37.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 82 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 138
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 139 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 194
Query: 124 SVADE 128
+A+E
Sbjct: 195 KLAEE 199
Score = 86 (35.3 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 38/160 (23%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 198 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 255
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 256 VEACANAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 312
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F A + PH F HH P
Sbjct: 313 RGAPPAPPYHPF-ATHSGYFSSLYPPHQ-FGPFPHHHSYP 350
Score = 77 (32.2 bits), Expect = 9.3e-09, Sum P(3) = 9.3e-09
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 367 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 417
Score = 77 (32.2 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 351 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 405
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 406 PPEAQFKAQGRIFGKLKEENFF 427
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 119 FPLRILVPTQFVGAIIGKEGLTIKNITK 146
Score = 37 (18.1 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 261 PTGPSHPLPDHS--VSSQGAPYATG 283
P P HP HS SS P+ G
Sbjct: 317 PAPPYHPFATHSGYFSSLYPPHQFG 341
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 124 (48.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + A H S+ H+ G PE L +
Sbjct: 320 RGAPPAPPYHPFAT-HSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 378
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 379 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 434
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 435 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 490
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 491 VRIIGHFFASQTA 503
Score = 92 (37.4 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 36/125 (28%), Positives = 62/125 (49%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 89 DEEVSSPTPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 145
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 146 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 201
Query: 124 SVADE 128
+A+E
Sbjct: 202 KLAEE 206
Score = 85 (35.0 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 38/160 (23%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 205 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 262
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 263 VEACANAEVEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 319
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F A + PH F HH P
Sbjct: 320 RGAPPAPPYHPF-ATHSGYFSSLYPPHQ-FGPFPHHHSYP 357
Score = 77 (32.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 374 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 424
Score = 77 (32.2 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 358 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 412
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 413 PPEAQFKAQGRIFGKLKEENFF 434
Score = 62 (26.9 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 126 FPLRILVPTQFVGAIIGKEGLTIKNITK 153
Score = 37 (18.1 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 261 PTGPSHPLPDHS--VSSQGAPYATG 283
P P HP HS SS P+ G
Sbjct: 324 PAPPYHPFATHSGYFSSLYPPHQFG 348
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 124 (48.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP A + A H S+ H+ G PE L +
Sbjct: 388 RGAPPAPPYHPFAT-HSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 446
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 447 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 502
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 503 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 558
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 559 VRIIGHFFASQTA 571
Score = 93 (37.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 157 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 213
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 214 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 269
Query: 124 SVADE 128
+A+E
Sbjct: 270 KLAEE 274
Score = 86 (35.3 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 38/160 (23%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 330
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 331 VEACANAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 387
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
P+ +H F A + PH F HH P
Sbjct: 388 RGAPPAPPYHPF-ATHSGYFSSLYPPHQ-FGPFPHHHSYP 425
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 442 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 492
Score = 62 (26.9 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 194 FPLRILVPTQFVGAIIGKEGLTIKNITK 221
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 103 (41.3 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
V RL+V ++Q G L+GKGG I E+R+ +GA +++ G D +P + E + I G +
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQ 114
Query: 462 AVQEALFQI 470
++ E + QI
Sbjct: 115 SIIECVKQI 123
Score = 99 (39.9 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 260 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 317
Score = 96 (38.9 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 240 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 294
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 295 ITGSAASISLAQYLINVRL 313
Score = 95 (38.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 165 ERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI------------ 212
++M E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 37 KKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 96
Query: 213 DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPL 268
D LP +++ + I G ++ + +K I +L++ P+ +IP P S P+
Sbjct: 97 DMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKG-VTIPYRPKPSSSPV 148
Score = 72 (30.4 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 36 NQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVV 94
N + S P + R++ P S+ +IGK G + +I + TG ++V + + S ER +
Sbjct: 50 NSTAASRPP-VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAIT 108
Query: 95 I 95
I
Sbjct: 109 I 109
Score = 61 (26.5 bits), Expect = 0.00089, Sum P(3) = 0.00089
Identities = 32/136 (23%), Positives = 51/136 (37%)
Query: 251 PRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIH-LPMPPS-IPKFH-ESGVL 307
P S+ NP PL +++ Q YA D+ +H L M S P H +G
Sbjct: 167 PHTTPSMCLNPDLEGPPLEAYTIQGQ---YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 223
Query: 308 DRPKPSPEILTF--------RLLCHD-----ERXXXXXXXXXXXXRSLKQETGCDIKVME 354
SPE+ + + H+ + ++Q +G IK+
Sbjct: 224 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 283
Query: 355 AVSGTEDRLIVISGPA 370
V G+ DR + I+G A
Sbjct: 284 PVEGSTDRQVTITGSA 299
Score = 46 (21.3 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQI 212
+RLL+ +VG ++GK G +K++
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKM 39
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQD 74
+ R+L ++ +IGK GE + ++ ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREE 42
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 134 (52.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 42/159 (26%), Positives = 78/159 (49%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+ I + E +R+I I+G R
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITGATECVFR- 83
Query: 377 SAPQDAVLRVQTRIARAIPDNR---EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A ++++ +A + + + V RL++ ++Q G L+GKGGS I E+R+ +GA
Sbjct: 84 -AFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGA 142
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITT 472
+++ G D +P + E V I+G +A+ + + I T
Sbjct: 143 QVQVAG-DLLP---NSTERGVTISGSQDAIIQCVKLICT 177
Score = 99 (39.9 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 38/136 (27%), Positives = 68/136 (50%)
Query: 136 SVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLS 195
+++EGS + T V +A ++ ++ E + VA+ T LRL++ +
Sbjct: 61 NISEGSCPERIITITGATECVFRAFTMITIKLEE-DLAALVANGTVTSKPPVTLRLVIPA 119
Query: 196 TQVGCLLGKGGCVIKQI-DKLPT-CALASDEV-------VQITGEVDTVRKALKLISHQL 246
+Q G L+GKGG IK+I +K +A D + V I+G D + + +KLI +
Sbjct: 120 SQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQDAIIQCVKLICTVI 179
Query: 247 LDNSPRDHESIPGNPT 262
L++ P+ +IP P+
Sbjct: 180 LESPPKG-ATIPYRPS 194
Score = 94 (38.1 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 388 TRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCA 447
T++ A ++ QT LL+ ++ IG ++G+ G+ I E+R++SGA I+I G Q+
Sbjct: 266 TQVLPAGIESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKI-GS-QLD--- 320
Query: 448 SENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRP--LNPTFLDQVSPFPS 503
S ++ V I G ++ A + IT+ L S++ P LN +F P S
Sbjct: 321 STSDRHVTITGSPISINLAQYLITSCLETAKSTAQSSSMSTPVDLNMSFTQTAPPASS 378
Score = 76 (31.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVVIEASDN 100
+ R++ P S+ +IGK G + +I + TG ++V + + S ER V I S +
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQD 166
Score = 72 (30.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETET 662
I G G + +IRQ+S A+I I ++ + I+G+P + AQ LI + + + T
Sbjct: 294 IIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYLITSCLETAKST 353
Score = 62 (26.9 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS-DERLVVI 95
+ R+L ++ +IGK GE + +I +++ I + E GS ER++ I
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE---GSCPERIITI 74
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 143 (55.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 145 (56.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 87/374 (23%), Positives = 166/374 (44%)
Query: 131 NKKEDS-VNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVL 189
++KE++ E S+ + L++ + TS K++L + + E D + T+ + L
Sbjct: 232 HRKENAGAAEKSITI--LSTPEGTSAACKSILEIMHK--------EAQDIKFTE--EIPL 279
Query: 190 RLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-VVQITGEVDTVRKA 238
++L + VG L+GK G +K+I++ L L + E + + G V+T KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 239 LKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-PYATGHRD-VADIHLPMPP 296
+ I ++ ++ D S+ +H +P ++++ G P +G + M P
Sbjct: 340 EEEIMKKIRESYENDIASM----NLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTP 395
Query: 297 SIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAV 356
P+F +S E T L + L + G IK+ A
Sbjct: 396 PYPQFEQS----------ETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE 445
Query: 357 S-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGC 415
+ + R+++I+GP P+ + A +++ + E + + V S G
Sbjct: 446 APDAKVRMVIITGP--PEAQFKAQGRIYGKIKEE--NFVSPKEEVKLEAHIRVPSFAAGR 501
Query: 416 LLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA---LFQIT 471
++GKGG + E++ LS A + ++ +DQ P EN++VV+ I G F A Q A + +I
Sbjct: 502 VIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVAQRKIQEIL 557
Query: 472 TRLRHHFFRDAFPS 485
T+++ H + A S
Sbjct: 558 TQVKQHQQQKALQS 571
Score = 69 (29.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 20/107 (18%), Positives = 45/107 (42%)
Query: 7 PSKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGK 63
P + + +P G+ + G + P SK P + R+L P + +IGK
Sbjct: 155 PDEMAAQQNPSQQPRGRRGFGQ-RGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGK 213
Query: 64 DGEMMSQISQDTGVTIRV--EETVSGSDERLVVIEASDNKKETSENL 108
+G + I++ T I V +E +++ + ++ + +++
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI 260
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 145 (56.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 87/374 (23%), Positives = 166/374 (44%)
Query: 131 NKKEDS-VNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVL 189
++KE++ E S+ + L++ + TS K++L + + E D + T+ + L
Sbjct: 232 HRKENAGAAEKSITI--LSTPEGTSAACKSILEIMHK--------EAQDIKFTE--EIPL 279
Query: 190 RLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-VVQITGEVDTVRKA 238
++L + VG L+GK G +K+I++ L L + E + + G V+T KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 239 LKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-PYATGHRD-VADIHLPMPP 296
+ I ++ ++ D S+ +H +P ++++ G P +G + M P
Sbjct: 340 EEEIMKKIRESYENDIASM----NLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTP 395
Query: 297 SIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAV 356
P+F +S E T L + L + G IK+ A
Sbjct: 396 PYPQFEQS----------ETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE 445
Query: 357 S-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGC 415
+ + R+++I+GP P+ + A +++ + E + + V S G
Sbjct: 446 APDAKVRMVIITGP--PEAQFKAQGRIYGKIKEE--NFVSPKEEVKLEAHIRVPSFAAGR 501
Query: 416 LLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA---LFQIT 471
++GKGG + E++ LS A + ++ +DQ P EN++VV+ I G F A Q A + +I
Sbjct: 502 VIGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVAQRKIQEIL 557
Query: 472 TRLRHHFFRDAFPS 485
T+++ H + A S
Sbjct: 558 TQVKQHQQQKALQS 571
Score = 69 (29.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 19/95 (20%), Positives = 42/95 (44%)
Query: 19 EPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
+P G+ + G + P SK P + R+L P + +IGK+G + I++ T
Sbjct: 167 QPRGR-RGLGQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQT 225
Query: 76 GVTIRV--EETVSGSDERLVVIEASDNKKETSENL 108
I V +E +++ + ++ + +++
Sbjct: 226 QSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI 260
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 145 (56.1 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 89/376 (23%), Positives = 165/376 (43%)
Query: 131 NKKEDS-VNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVL 189
++KE++ E S+ + L++ + TS K++L + + E D + T+ + L
Sbjct: 232 HRKENTGAAEKSITI--LSTPEGTSAACKSILEIMHK--------EAQDIKFTE--EIPL 279
Query: 190 RLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-VVQITGEVDTVRKA 238
++L + VG L+GK G +K+I++ L L + E + + G V+T KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKA 339
Query: 239 LKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-PYATGHRDVADIHLPMPPS 297
+ I ++ ++ D S+ +H +P ++++ G P +G MPP
Sbjct: 340 EEEIMKKIRESYENDIASM----NLQAHLIPGLNLNALGLFPPTSG----------MPP- 384
Query: 298 IPKFHESGVLDRPKPS---PEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVME 354
P L P P E T L + L + G IK+
Sbjct: 385 -PTSGPPSTLTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAP 443
Query: 355 AVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQI 413
A + + R+++I+GP P+ + A +++ + E + + V S
Sbjct: 444 AEAPDAKVRMVIITGP--PEAQFKAQGRIYGKIKEE--NFVSPKEEVKLEAHIRVPSFAA 499
Query: 414 GCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA---LFQ 469
G ++GKGG + E++ LS A + ++ +DQ P EN++VV+ I G F A Q A + +
Sbjct: 500 GRVIGKGGKTVNELQSLSSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVAQRKIQE 555
Query: 470 ITTRLRHHFFRDAFPS 485
I T+++ H + A S
Sbjct: 556 ILTQVKQHQQQKALQS 571
Score = 68 (29.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 34 SENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV--EETVSGSDER 91
S SK P + R+L P + +IGK+G + I++ T I V +E +++
Sbjct: 184 SPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKS 243
Query: 92 LVVIEASDNKKETSENL 108
+ ++ + +++
Sbjct: 244 ITILSTPEGTSAACKSI 260
Score = 39 (18.8 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 102 KETSENLEASIERSENNGREEASV 125
K+T ++ + R EN G E S+
Sbjct: 223 KQTQSKID--VHRKENTGAAEKSI 244
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 145 (56.1 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 86/373 (23%), Positives = 166/373 (44%)
Query: 131 NKKEDS-VNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVL 189
++KE++ E S+ + L++ + TS K++L + + E D + T+ + L
Sbjct: 232 HRKENAGAAEKSITI--LSTPEGTSAACKSILEIMHK--------EAQDIKFTE--EIPL 279
Query: 190 RLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-VVQITGEVDTVRKA 238
++L + VG L+GK G +K+I++ L L + E + + G V+T KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 239 LKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-PYATGHRDVADIHLPMPPS 297
+ I ++ ++ D S+ +H +P ++++ G P +G +P P S
Sbjct: 340 EEEIMKKIRESYENDIASM----NLQAHLIPGLNLNALGLFPPTSG--------MPPPTS 387
Query: 298 IPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVS 357
P + + + E T L + L + G IK+ A +
Sbjct: 388 GPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA 447
Query: 358 -GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCL 416
+ R+++I+GP P+ + A +++ + E + + V S G +
Sbjct: 448 PDAKVRMVIITGP--PEAQFKAQGRIYGKIKEE--NFVSPKEEVKLEAHIRVPSFAAGRV 503
Query: 417 LGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA---LFQITT 472
+GKGG + E++ LS A + ++ +DQ P EN++VV+ I G F A Q A + +I T
Sbjct: 504 IGKGGKTVNELQNLSSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVAQRKIQEILT 559
Query: 473 RLRHHFFRDAFPS 485
+++ H + A S
Sbjct: 560 QVKQHQQQKALQS 572
Score = 68 (29.0 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 34 SENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV--EETVSGSDER 91
S SK P + R+L P + +IGK+G + I++ T I V +E +++
Sbjct: 184 SPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKS 243
Query: 92 LVVIEASDNKKETSENL 108
+ ++ + +++
Sbjct: 244 ITILSTPEGTSAACKSI 260
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 113 (44.8 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G +++IR S A ITI +P P + + +I ISGTP+Q AQ L+Q V E
Sbjct: 435 IIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQQSVHEE 491
Score = 100 (40.3 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 37/149 (24%), Positives = 70/149 (46%)
Query: 375 RISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA- 433
+ISA ++ L + T + + + R++ RLL+ + GC++GKGG I E+R G
Sbjct: 69 QISADIESTLEIITEMLKYF-EERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCR 127
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLN-- 491
++++ + P+ + VV G+ V EA+ ++ T R + A + + P+N
Sbjct: 128 FLKVFS-NVAPQ---STDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYD-PMNFD 182
Query: 492 PTFLDQVSPFPSFIGRRELSPPGMYSNFG 520
+ D+ + + G S G N G
Sbjct: 183 RVYADEYGGYGTGSGSTRPSQRGNNRNGG 211
Score = 77 (32.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 174 TEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI-DKLPTCAL---------ASD 223
TE+ + F +RLL+ + GC++GKGG IK+I D++ L ++D
Sbjct: 82 TEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTD 141
Query: 224 EVVQITGEVDTVRKALK 240
VVQ G+ V +A++
Sbjct: 142 RVVQTVGKQSQVIEAVR 158
Score = 71 (30.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 23/94 (24%), Positives = 49/94 (52%)
Query: 169 EVEPETE-VADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE--- 224
E+ E E DQ+ + S+ +R+L+ S+ G ++GKGG I+++ ++ D+
Sbjct: 4 EMNDEGEGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQG 63
Query: 225 ---VVQITGEVDTVRKALKLISHQLLDNSPRDHE 255
+QI+ ++++ L++I+ L RD +
Sbjct: 64 PERTIQISADIEST---LEIITEMLKYFEERDED 94
Score = 69 (29.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
NR R+L+ S+ G ++GKGG I +MR A + + Q P E + I
Sbjct: 18 NRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV-DDSQGP------ERTIQI 70
Query: 457 NGEFEAVQEALFQITTRLRHHFFRD 481
+ + E+ E IT L++ RD
Sbjct: 71 SADIESTLEI---ITEMLKYFEERD 92
Score = 63 (27.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEAS-DNKKET-SE 106
R+L P S VIGK G+ + ++ T+ V++ S ER + I A ++ E +E
Sbjct: 26 RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERTIQISADIESTLEIITE 83
Query: 107 NLEASIERSEN 117
L+ ER E+
Sbjct: 84 MLKYFEERDED 94
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 118 (46.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 340 RSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNR 398
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 329 KQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFFNPKE 384
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-IN 457
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV++ I
Sbjct: 385 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVIVRII 440
Query: 458 GEFEAVQEA 466
G F A Q A
Sbjct: 441 GHFFASQTA 449
Score = 93 (37.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 78 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGSSQARQIDFPLRILVPTQFVGAIIGKEG 134
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 135 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 190
Query: 124 SVADE 128
+A+E
Sbjct: 191 KLAEE 195
Score = 77 (32.2 bits), Expect = 8.2e-07, Sum P(3) = 8.2e-07
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 320 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 370
Score = 77 (32.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 304 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 358
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 359 PPEAQFKAQGRIFGKLKEENFF 380
Score = 65 (27.9 bits), Expect = 8.2e-07, Sum P(3) = 8.2e-07
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 194 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 251
Query: 460 FEAVQEALFQITTRLRHHFFRD 481
EA A +I +LR F D
Sbjct: 252 VEACANAEIEIMKKLREAFEND 273
Score = 62 (26.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/114 (20%), Positives = 50/114 (43%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKS-FPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
H P G ++ ++ + + + ++ I ++L + +IGK+G + +I +T
Sbjct: 166 HATPEGTSEACRMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHET 225
Query: 76 G--VTIRVEETVS-GSDERLVVIEASDNKKETSENLEASIERSENNGREEASVA 126
G +TI + +S + ER + ++ + E N E I + E +A
Sbjct: 226 GTKITISSLQDLSIYNPERTITVKGT---VEACANAEIEIMKKLREAFENDMLA 276
Score = 48 (22.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 166 RMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQID 213
RM+ +E + AD E + + L++L + VG L+GK G +K+I+
Sbjct: 177 RMI-LEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIE 222
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 49/193 (25%), Positives = 81/193 (41%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+G P + + A H S+ H G PE T L +
Sbjct: 381 RGVPPSPPYHPFAT-HSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKK 439
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 440 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 495
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 496 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 551
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 552 VRIIGHFFASQTA 564
Score = 99 (39.9 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 40/160 (25%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ V ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 266 EEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVRGT 323
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 324 IEACANAEIEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 380
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
PS +H F S +PH F HH P
Sbjct: 381 RGVPPSPPYHPF--ATHSGYFSSLYPHHHFGPFPHHHSYP 418
Score = 80 (33.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 14 DDNHTEPNGKEKSQKLA-GDYSENQPSK-SFPGGIMFRVLCPVSKIDGVIGKDGEMMSQI 71
D+ + P+ ++++ G S +Q + FP R+L P + +IGK+G + I
Sbjct: 157 DEEVSSPSPPHRAREQGHGPGSSSQARQIDFP----LRILVPTQFVGAIIGKEGLTIKNI 212
Query: 72 SQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEASVADE 128
++ T V I +E SG+ E+ V I A+ + TSE +E + +E +A+E
Sbjct: 213 TKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DETKLAEE 267
Score = 77 (32.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 435 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 62 (26.9 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 187 FPLRILVPTQFVGAIIGKEGLTIKNITK 214
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 119 (46.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 44/172 (25%), Positives = 74/172 (43%)
Query: 297 SIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAV 356
S+ H+ G PE L + + L + G IK+ A
Sbjct: 365 SLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAE 424
Query: 357 S-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGC 415
+R+++I+GP P+ + A Q + + + E + + V S+ G
Sbjct: 425 GPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFFNPKEEVKLEAHIRVPSSTAGR 480
Query: 416 LLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
++GKGG + E++ L+ A + I+ +DQ P ENEEV++ I G F A Q A
Sbjct: 481 VIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVIVRIIGHFFASQTA 528
Score = 93 (37.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 36/125 (28%), Positives = 63/125 (50%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P+ +++Q+ GD+S + + PGG I F R+L P + +IGK+G
Sbjct: 157 DEEVSSPSPPQRAQR--GDHSSREQGHA-PGGTSQARQIDFPLRILVPTQFVGAIIGKEG 213
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ I++ T V I +E SG+ E+ V I A+ + TSE +E + +E
Sbjct: 214 LTIKNITKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DET 269
Query: 124 SVADE 128
+A+E
Sbjct: 270 KLAEE 274
Score = 77 (32.2 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 399 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 449
Score = 77 (32.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLING 458
EQ ++ L + + +G ++GK G+ I ++ + +GA I+I + P + E +V+I G
Sbjct: 383 EQEIVN-LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITG 437
Query: 459 EFEAVQEALFQITTRLRH-HFF 479
EA +A +I +L+ +FF
Sbjct: 438 PPEAQFKAQGRIFGKLKEENFF 459
Score = 65 (27.9 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 330
Query: 460 FEAVQEALFQITTRLRHHFFRD 481
EA A +I +LR F D
Sbjct: 331 VEACASAEIEIMKKLREAFEND 352
Score = 60 (26.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 17/86 (19%), Positives = 42/86 (48%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKS-FPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
H P G ++ ++ + + + ++ I ++L + +IGK+G + +I +T
Sbjct: 245 HATPEGTSEACRMILEIMQKEADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHET 304
Query: 76 G--VTIRVEETVS-GSDERLVVIEAS 98
G +TI + +S + ER + ++ +
Sbjct: 305 GTKITISSLQDLSIYNPERTITVKGT 330
Score = 48 (22.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 166 RMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQID 213
RM+ +E + AD E + + L++L + VG L+GK G +K+I+
Sbjct: 256 RMI-LEIMQKEAD-ETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIE 301
Score = 39 (18.8 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 537 SFHPHDDHSAFMHHIHRP 554
S +PH F HH P
Sbjct: 365 SLYPHHQFGPFPHHHSYP 382
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 91 (37.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCA 219
++P+T V + + K +K L+V ++ G ++GKGG +K Q+ + P
Sbjct: 149 LQPQTTV-NPDRVKQAK----LVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI 203
Query: 220 LASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAP 279
+ VV I+GE + RKA+++I Q + P+ + + + S P+ + + + G+P
Sbjct: 204 NLQERVVTISGEPEQNRKAVEIIV-QKIQEDPQSSSCLNISYSNISGPVANSNPT--GSP 260
Query: 280 YA 281
YA
Sbjct: 261 YA 262
Score = 82 (33.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVL 455
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V +
Sbjct: 418 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVTI 469
Score = 79 (32.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 61 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 118
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 344 QE-TGCDIKVM---EAVSGTEDRLIVISG 368
QE TG I++ E V GT +R + I+G
Sbjct: 443 QELTGARIQISKKGEFVPGTRNRKVTITG 471
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 138 (53.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 46/200 (23%), Positives = 82/200 (41%)
Query: 302 HESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTED 361
H D P P + R+LC + +K ET I + + G +
Sbjct: 52 HSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPE 111
Query: 362 RLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQT-VMTRLLVASNQIGCLLGKG 420
R++ + G DD ++ ++R DN E + LL+ + +GC++GK
Sbjct: 112 RIVYVRGTC--DD-VAKAYGMIVRALLE-EHGNEDNGEDIEISINLLIPHHLMGCIIGKR 167
Query: 421 GSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFR 480
GS + E+ LS A + +Q+ N+ ++ ING +A+ A F I+ L +
Sbjct: 168 GSRLREIEDLSAAKL-FASPNQL---LLSNDRILTINGVPDAIHIATFYISQTLLNFQME 223
Query: 481 DAFPSINRPL--NPTFLDQV 498
++ R + PT + V
Sbjct: 224 SPQKNVKRSIYYQPTQFNSV 243
Score = 104 (41.7 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 4 PLTPSKRPHDD--DNHTEPNGKEKSQKLAGDYSENQPSK--SFPGGIMFRVLCPVSKIDG 59
P T ++ +D + E K + K A +S+N + P + R+LC V
Sbjct: 21 PNTLKRKKGEDTSEEQLEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASL 80
Query: 60 VIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEAS--DNKKETSENLEASIER--S 115
++G G +S+I +T I + + G ER+V + + D K + A +E +
Sbjct: 81 IVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRALLEEHGN 140
Query: 116 ENNGRE-EASV 125
E+NG + E S+
Sbjct: 141 EDNGEDIEISI 151
Score = 68 (29.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLI 652
G+DG + +++ + I I DP G++E + I GT + AA LI
Sbjct: 347 GKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 65 (27.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 341 SLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRI 390
S+K+ TGC I + + V G+ +R + I G A Q A++ + +I
Sbjct: 355 SVKESTGCSIIIQDPVEGSSERRLTIRGT------FMASQAAIMLISNKI 398
Score = 58 (25.5 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
V + + +G ++GK G I +++ +G I I +D + +E + I G F
Sbjct: 331 VQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIII--QDPVE---GSSERRLTIRGTFM 385
Query: 462 AVQEALFQITTRL 474
A Q A+ I+ ++
Sbjct: 386 ASQAAIMLISNKI 398
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 127 (49.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 50/193 (25%), Positives = 82/193 (42%)
Query: 276 QGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXX 335
+GAP + + A H S+ H G PE T L +
Sbjct: 381 RGAPPSPPYHPFAT-HSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKK 439
Query: 336 XXXXRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 440 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFF 495
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV+
Sbjct: 496 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVI 551
Query: 455 L-INGEFEAVQEA 466
+ I G F A Q A
Sbjct: 552 VRIIGHFFASQTA 564
Score = 98 (39.6 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 40/160 (25%), Positives = 62/160 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ V ++L + +G L+GK G + ++ +G I I + E + + G
Sbjct: 266 EEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLS--IYNPERTITVKGT 323
Query: 460 FEAVQEALFQITTRLRHHFFRDAFPSINRPLN--PTF-LDQVSPFPSFIGRRELSPPGMY 516
EA A +I +LR F D ++N+ N P L + F + G L PP
Sbjct: 324 IEACASAEMEIMKKLREAFENDML-AVNQQANLIPGLNLSALGIFST--GLSVLPPPAGP 380
Query: 517 SNFGPS--FHKFDAVXXXXXXXSFHPHDDHSAFMHHIHRP 554
PS +H F S +PH F HH P
Sbjct: 381 RGAPPSPPYHPF--ATHSGYFSSLYPHHHFGPFPHHHSYP 418
Score = 80 (33.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 32/119 (26%), Positives = 58/119 (48%)
Query: 14 DDNHTEPNGKEKSQKLA-GDYSENQPSK-SFPGGIMFRVLCPVSKIDGVIGKDGEMMSQI 71
D+ + P+ ++++ G S +Q + FP R+L P + +IGK+G + I
Sbjct: 157 DEELSSPSPPHRAREQGHGPGSSSQARQIDFP----LRILVPTQFVGAIIGKEGLTIKNI 212
Query: 72 SQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEASVADE 128
++ T V I +E SG+ E+ V I A+ + TSE +E + +E +A+E
Sbjct: 213 TKQTQSRVDIHRKEN-SGAAEKPVTIHATP--EGTSEACRMILEIMQKEA-DETKLAEE 267
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ GA +KQ+ + + A I I + P +E ++II+G PE AQ I
Sbjct: 435 IIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 187 FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
F LR+LV + VG ++GK G IK I K
Sbjct: 187 FPLRILVPTQFVGAIIGKEGLTIKNITK 214
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 99 DNKKETSENLEASIERSENNGREEASVADE--SDNKKED 135
+N ++ + + E ++ REEA VA E S ++ ED
Sbjct: 109 ENVEQVNTDTETAVVNVTYMTREEAKVAIEKLSGHQFED 147
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 141 (54.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 70/304 (23%), Positives = 134/304 (44%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-V 225
+ ++TK ++ + L++L + VG L+GK G +K+I++ L L + E
Sbjct: 277 EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERT 336
Query: 226 VQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-PYATGH 284
+ + G ++ KA + I ++ ++ D ++ +H +P ++++ G P ++
Sbjct: 337 ITVKGSIEPCAKAEEEIMKKIRESYENDIAAM----NLQAHLIPGLNLNALGLFPSSSSG 392
Query: 285 RDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQ 344
+ +P P S + G PE T L + L +
Sbjct: 393 MPPPSVGVPSPTSSTSYPPFG------QQPESETVHLFIPALAVGAIIGKQGQHIKQLSR 446
Query: 345 ETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVM 403
G IK+ A + R+++I+GP P+ + A Q + + + E +
Sbjct: 447 FAGASIKIAPAEGPDAKLRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLE 502
Query: 404 TRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEA 462
T + V S G ++GKGG + E++ L+ A + ++ +DQ P EN+EVV+ I G F A
Sbjct: 503 THIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDEVVVKITGHFYA 558
Query: 463 VQEA 466
Q A
Sbjct: 559 SQLA 562
Score = 68 (29.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/102 (22%), Positives = 45/102 (44%)
Query: 1 MSLPLTPSKRPHDDDNHTEPNGKEK-SQK-LAGDYSENQPSKSFPGG-IMFRVLCPVSKI 57
M+ P PS++ P G+ Q+ A S ++ P + R+L P +
Sbjct: 158 MATPQAPSQQLQQQPQQQHPQGRRGFGQRGPARQGSPGAAARPKPQTEVPLRMLVPTQFV 217
Query: 58 DGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEAS 98
+IGK+G + I++ T I + + G+ E+ + I ++
Sbjct: 218 GAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHST 259
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 103 (41.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
V RL+V ++Q G L+GKGG I E+R+ +GA +++ G D +P + E + I G +
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQ 95
Query: 462 AVQEALFQI 470
++ E + QI
Sbjct: 96 SIIECVKQI 104
Score = 99 (39.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 245 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET 302
Score = 96 (38.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT L + ++ IGC++G+ G+ I E+R++SGA I+I P S + +V
Sbjct: 225 DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVT- 279
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + I RL
Sbjct: 280 ITGSAASISLAQYLINVRL 298
Score = 87 (35.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/95 (30%), Positives = 47/95 (49%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQI------------DKLPTCALASDEVVQITGEVDTVR 236
LRL+V ++Q G L+GKGGC IK+I D LP +++ + I G ++
Sbjct: 42 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSII 98
Query: 237 KALK---LISHQLLDNSPRDHESIPGNPTGPSHPL 268
+ +K ++ + L SP +IP P S P+
Sbjct: 99 ECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPV 133
Score = 75 (31.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 21 NGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIR 80
+GK+ S + + ++P P + R++ P S+ +IGK G + +I + TG ++
Sbjct: 21 HGKDISSSMTNSTAASRP----P--VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 74
Query: 81 VE-ETVSGSDERLVVI 95
V + + S ER + I
Sbjct: 75 VAGDMLPNSTERAITI 90
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 39/152 (25%), Positives = 78/152 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQE 465
+++ G D +P + E + I G +++ E
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIE 157
Score = 93 (37.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 94 VIEASDNKKETSENLEASIERSENNGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKE 152
VIE N T L E G++ SV ++ +++EG+ +
Sbjct: 5 VIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP 64
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
T+ + KA ++ +++ E + + + + LRL+V ++Q G L+GKGGC IK+I
Sbjct: 65 TNAIFKAFAMIIDKLEE-DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Score = 80 (33.2 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I + P E ++ + G
Sbjct: 13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPT 65
Query: 461 EAVQEALFQITTRL 474
A+ +A I +L
Sbjct: 66 NAIFKAFAMIIDKL 79
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G +K+IR+ + A++ + D P +TE I I+G P+
Sbjct: 114 GKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ 153
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 105 (42.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 54/254 (21%), Positives = 111/254 (43%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRV------EETVSGSDERLVVIEA 97
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQG 107
Query: 98 SDNKKETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQ 157
+ A E+ + A S + + +VN + L S T+K
Sbjct: 108 TVEALNAVHGFIA--EKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT-LPSSPTTTKSS 164
Query: 158 KALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIK------- 210
+ +P T +++++ ++++V ++ G ++GKGG +K
Sbjct: 165 PS-----------DPMT------TSRANQ--VKIIVPNSTAGLIIGKGGATVKAVMEQSG 205
Query: 211 ---QIDKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
Q+ + P + VV ++GE + RKA++LI Q + P+ + + + P
Sbjct: 206 AWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGP 264
Query: 268 LPDHSVSSQGAPYA 281
+ + + + G+PYA
Sbjct: 265 VANSNPT--GSPYA 276
Score = 102 (41.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 426 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 482
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 483 ATQAAQYLITQRITY 497
Score = 88 (36.0 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 21/88 (23%), Positives = 49/88 (55%)
Query: 388 TRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCA 447
T+ + + P + +++V ++ G ++GKGG+ + + + SGA++++ Q P
Sbjct: 161 TKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGI 217
Query: 448 SENEEVVLINGEFEAVQEALFQITTRLR 475
+ E VV ++GE E ++A+ I +++
Sbjct: 218 NLQERVVTVSGEPEQNRKAVELIIQKIQ 245
Score = 77 (32.2 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 77
Score = 73 (30.8 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 439 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 491
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 109 (43.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 51/223 (22%), Positives = 85/223 (38%)
Query: 293 PMPPS-IPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIK 351
P P S +P +D + + LT R L L+ T
Sbjct: 69 PEPTSQVPPISAKPPMDDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAG 128
Query: 352 VMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
V +AV DR++ ISGP R + + P + RLL+A +
Sbjct: 129 VTKAVPNVHDRVLTISGPLENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLLIAHS 188
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQIT 471
+G ++G+ G I ++ + I KD +P+ E V I+G + + A+++I
Sbjct: 189 LMGSIIGRNGLRIKLIQDKCSCRM-IASKDMLPQ---STERTVEIHGTVDNLHAAIWEIG 244
Query: 472 TRLRHHFFRDAFPSINRPLNPTFLDQVSP-FPSFIGRRELSPP 513
L + R A P++ L Q P S +++SPP
Sbjct: 245 KCLIDDWERGAGTVFYNPVSR--LTQPLPSLASTASPQQVSPP 285
Score = 105 (42.0 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 366 ISGPAHPDDRI--SAPQDAV-LRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGS 422
+S PA P + P++ V Q A +P ++ V + + ++ +GC++G+GGS
Sbjct: 282 VSPPAAPSTTSGEAIPENFVSYGAQVFPATQMPFLQQPKVTQNISIPADMVGCIIGRGGS 341
Query: 423 IIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
I+E+R+ SG+ I I K+ P + E + I G E ++ALF + +L
Sbjct: 342 KISEIRRTSGSKISI-AKE--PHDET-GERMFTITGTHEENEKALFLLYQQL 389
Score = 88 (36.0 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL---------ASDEVVQITGEVDTVRKAL 239
LRLL+ + +G ++G+ G IK I +C + +++ V+I G VD + A+
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAI 240
Query: 240 KLISHQLLDNSPRDHESIPGNPTGP-SHPLPDHSVSSQGAP 279
I L+D+ R ++ NP + PLP S++S +P
Sbjct: 241 WEIGKCLIDDWERGAGTVFYNPVSRLTQPLP--SLASTASP 279
Score = 65 (27.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPEQTHAAQSLI 652
I G G+ + +IR+ S +KI+I +P E + I+GT E+ A L+
Sbjct: 335 IIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKALFLL 385
Score = 49 (22.3 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVI 95
+ R L + +IGK G+ ++++ T V V + V +R++ I
Sbjct: 94 LTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTI 143
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 112 (44.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 38/167 (22%), Positives = 71/167 (42%)
Query: 309 RPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG 368
RP+ + R + + +++ +G V + G +R++ +SG
Sbjct: 100 RPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG 159
Query: 369 PAHPDDRISAPQDAVLR-VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEM 427
P D ++ ++R + A + +T RLL+ IG ++GKGG+ I E+
Sbjct: 160 P---QDAVAKAFGLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREI 216
Query: 428 RKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
+ SGA R+ D ++E V+L G +AV A + + L
Sbjct: 217 QDASGA--RLNASDACLPLSTERSLVIL--GVADAVHIATYYVAVTL 259
Score = 111 (44.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 35/109 (32%), Positives = 56/109 (51%)
Query: 367 SGPAHPDDRISAPQDAVLRVQTRIARAIPDNRE-QTVMTRLLVASNQIGCLLGKGGSIIA 425
+GP P APQ A R A + Q + ++ + ++ +G ++GKGG+ I
Sbjct: 356 AGPHQPTP-YGAPQAAQPRGGPTPAAPVGGAMPGQPLTQQIYIPNDMVGAIIGKGGAKIN 414
Query: 426 EMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474
E+R LSG+ I+I + Q + NE +V I G E Q AL+ + +RL
Sbjct: 415 EIRHLSGSVIKI-NEPQ----ENSNERLVTITGTQECNQMALYMLYSRL 458
Score = 92 (37.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 42/169 (24%), Positives = 73/169 (43%)
Query: 113 ERSENNG--REEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEV 170
E SENN + E+ A+++D + + V + G++ ET +Q E
Sbjct: 42 EESENNAEVKTESGAANDADGQGDTVVPDAP--KGGVS---ETQPIQSTA-----SHGEA 91
Query: 171 EPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLP--TCAL------AS 222
+ +S+ +R ++ S + ++GKGG + QI +L C + A
Sbjct: 92 AGNQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAV 151
Query: 223 DEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDH 271
+ ++ ++G D V KA LI + L+N P D S + T P L H
Sbjct: 152 ERILTVSGPQDAVAKAFGLII-RTLNNEPLDAASTAQSKTYPLRLLIPH 199
Score = 87 (35.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 30/109 (27%), Positives = 47/109 (43%)
Query: 555 GMPPHMPDMKPWG-PQGLMEVGGPM-GFPDFXXXXXXXXXXXXXXXXXXI--IQGEDGAC 610
G PH P P+G PQ GGP P + I G+ GA
Sbjct: 355 GAGPHQPT--PYGAPQAAQPRGGPTPAAPVGGAMPGQPLTQQIYIPNDMVGAIIGKGGAK 412
Query: 611 LKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
+ +IR +S + I I +P+ + E ++ I+GT E A ++ + + SE
Sbjct: 413 INEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYMLYSRLESE 461
Score = 84 (34.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 32/120 (26%), Positives = 53/120 (44%)
Query: 11 PHDDDNHTEPNGKEKSQ-KLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMS 69
P + T+P S + AG+ SE Q + I R + + VIGK GE +S
Sbjct: 72 PKGGVSETQPIQSTASHGEAAGNQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVS 131
Query: 70 QISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEASVADES 129
QI + +G V + G+ ER++ + + + L I R+ NN +A+ +S
Sbjct: 132 QIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFGL---IIRTLNNEPLDAASTAQS 188
Score = 77 (32.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 156 VQKALLLVFERMVEVEPETEVADQENTKSSK-FVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
V KA L+ R + EP D +T SK + LRLL+ +G ++GKGG I++I
Sbjct: 164 VAKAFGLII-RTLNNEP----LDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQD 218
Query: 215 LPTCAL-ASDEVVQITGE 231
L ASD + ++ E
Sbjct: 219 ASGARLNASDACLPLSTE 236
Score = 64 (27.6 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 32 DYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEET-VSGSDE 90
D + SK++P R+L P I +IGK G + +I +G + + + S E
Sbjct: 181 DAASTAQSKTYP----LRLLIPHILIGSIIGKGGTRIREIQDASGARLNASDACLPLSTE 236
Query: 91 R-LVVIEASD 99
R LV++ +D
Sbjct: 237 RSLVILGVAD 246
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 96 (38.9 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 383 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 433
Score = 83 (34.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 48/202 (23%), Positives = 86/202 (42%)
Query: 72 SQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA-SVADESD 130
S++T + + + + V+ + N K + AS+ +++G E S++ + +
Sbjct: 39 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIE 98
Query: 131 NKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--V 188
E L +GL T+ Q L E + E + ++ K S F
Sbjct: 99 TIGEILKKIIPTLEEGLQLPSPTATSQLPL--------ESDA-VECLNYQHYKGSDFDCE 149
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQID-------KL--PTCALASDEVVQITGEVDTVRKAL 239
LRLL+ + G ++G G IK++ KL C ++D VV I G+ D V + +
Sbjct: 150 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECI 209
Query: 240 KLISHQLLDNSPRDHESIPGNP 261
K+I L+ SP + P +P
Sbjct: 210 KIIL-DLISESPIKGRAQPYDP 230
Score = 83 (34.3 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 369 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 423
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 424 QIQNAQYLLQNSVKQY 439
Score = 78 (32.5 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 16 NHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQIS 72
+HTE NG E ++ A D E Q S++ + R+L VIGK G+ + +
Sbjct: 14 SHTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 72
Query: 73 QDTGVTIRVEETVSGSDERLVVIEA 97
D ++ V ++ SG ER++ I A
Sbjct: 73 TDYNASVSVPDS-SGP-ERILSISA 95
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 41 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 93
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 94 SADIETIGEILKKIIPTL 111
Score = 69 (29.3 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 151 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 206
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 207 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 242
Score = 69 (29.3 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 173 ETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQI--DKLPTCALAS----DEV 225
E E A + + + + V LR+L+ S G ++GKGG IK + D + ++ + +
Sbjct: 31 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 90
Query: 226 VQITGEVDTVRKALKLI 242
+ I+ +++T+ + LK I
Sbjct: 91 LSISADIETIGEILKKI 107
Score = 48 (22.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 188 CPQSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 246
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 247 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 296
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 117 (46.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 45/165 (27%), Positives = 71/165 (43%)
Query: 305 GVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVM--EAVSGTEDR 362
G P PE L + + L + G IK+ E TE R
Sbjct: 389 GAFPHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATE-R 447
Query: 363 LIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGS 422
+++I+GP P+ + A Q + + + E + + V S G ++GKGG
Sbjct: 448 MVIITGP--PEAQFKA-QGRIFG-KLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGK 503
Query: 423 IIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
+ E++ L+ A + I+ +DQ P ENEEV++ I G F A Q A
Sbjct: 504 TVNELQNLTSAEV-IVPRDQTP---DENEEVIVKIIGHFFASQTA 544
Score = 87 (35.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 33/136 (24%), Positives = 59/136 (43%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGG-IMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
H P G ++ ++ D + + ++ I ++L S + +IGK+G + +I QDT
Sbjct: 218 HATPEGCSEACRMILDIMQKEADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDT 277
Query: 76 GVTIRV---EETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEASVADESDNK 132
G I + ++ + ER + ++ S E N E I + E VA
Sbjct: 278 GTKITISPLQDLTIYNPERTITVKGST---EACSNAEVEIMKKLREAYENDIVA------ 328
Query: 133 KEDSVNEGSVLMDGLN 148
VN+ + L+ GLN
Sbjct: 329 ----VNQQANLIPGLN 340
Score = 80 (33.2 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ G +KQ+ + + A I I + P ATE ++II+G PE AQ I
Sbjct: 415 IIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 465
Score = 72 (30.4 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 32/151 (21%), Positives = 56/151 (37%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L ++ +G L+GK G + ++ + +G I I + E + + G
Sbjct: 246 EEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPERTITVKGS 303
Query: 460 FEAVQEALFQITTRLRHHFFRDA---------FPSINRPLNPTFLDQVSPFPSFIGRREL 510
EA A +I +LR + D P +N F +S PS G R
Sbjct: 304 TEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGA 363
Query: 511 SPPGMYSNFGPSFHKFDAVXXXXXXXSFHPH 541
+ Y F S + +F PH
Sbjct: 364 AAAAPYHPFASSSAYLSGLYGASPVGAF-PH 393
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 41/184 (22%), Positives = 80/184 (43%)
Query: 14 DDNHTEPNGKEKSQKLAGDYSENQPSKSFPGG------IMF--RVLCPVSKIDGVIGKDG 65
D+ + P ++S++ G S Q S PGG + F R+L P + +IGK+G
Sbjct: 130 DEEVSSPPPPQRSRR-GGHASREQGSS--PGGSSQPKQLDFPLRMLVPTQFVGAIIGKEG 186
Query: 66 EMMSQISQDTG--VTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEA 123
+ +++ T V I +E +G+ E+ + I A+ + + I + E +E
Sbjct: 187 LTIKNLTKQTQSKVDIHRKEN-AGAAEKPITIHATPEGCSEACRMILDIMQKE---ADET 242
Query: 124 SVADESDNK--KEDSVNEGSVLMDGLNSEK-ETSKVQKALLLVFERMVEVEPETEVADQE 180
A+E K +S+ + +G N +K E K + + + PE + +
Sbjct: 243 KSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTITVKG 302
Query: 181 NTKS 184
+T++
Sbjct: 303 STEA 306
Score = 62 (26.9 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 183 KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
K F LR+LV + VG ++GK G IK + K
Sbjct: 163 KQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTK 194
Score = 56 (24.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK 214
+ + TKS++ + L++L ++ VG L+GK G +K+I++
Sbjct: 238 EADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQ 275
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 102 (41.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 423 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 479
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 480 ATQAAQYLITQRITY 494
Score = 99 (39.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 51/241 (21%), Positives = 103/241 (42%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEASDN 100
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Query: 101 KKETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKAL 160
A E+ + A S + + +VN + L S T+K +
Sbjct: 108 ALNAVHGFIA--EKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT-LPSSPTTTKSSPSD 164
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL 220
+ R +V+ + +T L + V ++ + G + Q+ + P
Sbjct: 165 PMTTSRANQVK----IIVPNSTAG----LIIGKGGATVKAIMEQSGAWV-QLSQKPDGIN 215
Query: 221 ASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPY 280
+ VV ++GE + RKA++LI Q + P+ + + + P+ + + + G+PY
Sbjct: 216 LQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPY 272
Query: 281 A 281
A
Sbjct: 273 A 273
Score = 88 (36.0 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 21/88 (23%), Positives = 49/88 (55%)
Query: 388 TRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCA 447
T+ + + P + +++V ++ G ++GKGG+ + + + SGA++++ Q P
Sbjct: 158 TKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGI 214
Query: 448 SENEEVVLINGEFEAVQEALFQITTRLR 475
+ E VV ++GE E ++A+ I +++
Sbjct: 215 NLQERVVTVSGEPEQNRKAVELIIQKIQ 242
Score = 77 (32.2 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 77
Score = 73 (30.8 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 436 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 102 (41.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 423 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 479
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 480 ATQAAQYLITQRITY 494
Score = 99 (39.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 51/241 (21%), Positives = 103/241 (42%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEASDN 100
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Query: 101 KKETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKAL 160
A E+ + A S + + +VN + L S T+K +
Sbjct: 108 ALNAVHGFIA--EKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT-LPSSPTTTKSSPSD 164
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL 220
+ R +V+ + +T L + V ++ + G + Q+ + P
Sbjct: 165 PMTTSRANQVK----IIVPNSTAG----LIIGKGGATVKAIMEQSGAWV-QLSQKPDGIN 215
Query: 221 ASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPY 280
+ VV ++GE + RKA++LI Q + P+ + + + P+ + + + G+PY
Sbjct: 216 LQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPY 272
Query: 281 A 281
A
Sbjct: 273 A 273
Score = 88 (36.0 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 21/88 (23%), Positives = 49/88 (55%)
Query: 388 TRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCA 447
T+ + + P + +++V ++ G ++GKGG+ + + + SGA++++ Q P
Sbjct: 158 TKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGI 214
Query: 448 SENEEVVLINGEFEAVQEALFQITTRLR 475
+ E VV ++GE E ++A+ I +++
Sbjct: 215 NLQERVVTVSGEPEQNRKAVELIIQKIQ 242
Score = 77 (32.2 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 77
Score = 73 (30.8 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 436 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 102 (41.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 423 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 479
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 480 ATQAAQYLITQRITY 494
Score = 99 (39.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 51/241 (21%), Positives = 103/241 (42%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEASDN 100
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Query: 101 KKETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKAL 160
A E+ + A S + + +VN + L S T+K +
Sbjct: 108 ALNAVHGFIA--EKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT-LPSSPTTTKSSPSD 164
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL 220
+ R +V+ + +T L + V ++ + G + Q+ + P
Sbjct: 165 PMTTSRANQVK----IIVPNSTAG----LIIGKGGATVKAIMEQSGAWV-QLSQKPDGIN 215
Query: 221 ASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPY 280
+ VV ++GE + RKA++LI Q + P+ + + + P+ + + + G+PY
Sbjct: 216 LQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPY 272
Query: 281 A 281
A
Sbjct: 273 A 273
Score = 81 (33.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 43/232 (18%), Positives = 96/232 (41%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL--- 220
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K +
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 86
Query: 221 -ASDEVVQITGEVDTVRKALKLIS--HQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQG 277
+ D T V ++ ++ ++ H + R+ +P N + P+ S+
Sbjct: 87 KSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIRE---MPQN-VAKTEPV---SILQ-- 137
Query: 278 APYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXX 337
P T + D LP P+ K S P + +++ +
Sbjct: 138 -PQTTVNPDRIKQTLPSSPTTTKSSPSD----PMTTSRANQVKIIVPNSTAGLIIGKGGA 192
Query: 338 XXRSLKQETGCDIKVMEAVSGT--EDRLIVISGPAHPDDRISAPQDAVLRVQ 387
+++ +++G +++ + G ++R++ +SG P+ A + + ++Q
Sbjct: 193 TVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNRKAVELIIQKIQ 242
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 436 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 102 (41.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 423 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 479
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 480 ATQAAQYLITQRITY 494
Score = 99 (39.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 51/241 (21%), Positives = 103/241 (42%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEASDN 100
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 48 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Query: 101 KKETSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKAL 160
A E+ + A S + + +VN + L S T+K +
Sbjct: 108 ALNAVHGFIA--EKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT-LPSSPTTTKSSPSD 164
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL 220
+ R +V+ + +T L + V ++ + G + Q+ + P
Sbjct: 165 PMTTSRANQVK----IIVPNSTAG----LIIGKGGATVKAIMEQSGAWV-QLSQKPDGIN 215
Query: 221 ASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPY 280
+ VV ++GE + RKA++LI Q + P+ + + + P+ + + + G+PY
Sbjct: 216 LQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPY 272
Query: 281 A 281
A
Sbjct: 273 A 273
Score = 81 (33.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 43/232 (18%), Positives = 96/232 (41%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL--- 220
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K +
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 86
Query: 221 -ASDEVVQITGEVDTVRKALKLIS--HQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQG 277
+ D T V ++ ++ ++ H + R+ +P N + P+ S+
Sbjct: 87 KSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIRE---MPQN-VAKTEPV---SILQ-- 137
Query: 278 APYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXX 337
P T + D LP P+ K S P + +++ +
Sbjct: 138 -PQTTVNPDRIKQTLPSSPTTTKSSPSD----PMTTSRANQVKIIVPNSTAGLIIGKGGA 192
Query: 338 XXRSLKQETGCDIKVMEAVSGT--EDRLIVISGPAHPDDRISAPQDAVLRVQ 387
+++ +++G +++ + G ++R++ +SG P+ A + + ++Q
Sbjct: 193 TVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNRKAVELIIQKIQ 242
Score = 73 (30.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 436 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 96 (38.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 85 (35.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 53/227 (23%), Positives = 96/227 (42%)
Query: 53 PVSKIDGVIGK------DGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSE 106
P ++ +G GK + E + S++T + + + + V+ + N K
Sbjct: 11 PNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 107 NLEASIERSENNGREEA-SVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFE 165
+ AS+ +++G E S++ + + E L +GL T+ Q L
Sbjct: 71 DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL----- 125
Query: 166 RMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQID-------KL- 215
E + E + ++ K S F LRLL+ + G ++G G IK++ KL
Sbjct: 126 ---ESDA-VECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Query: 216 -PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 182 QECCPQSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 227
Score = 83 (34.3 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 442
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 443 QIQNAQYLLQNSVKQY 458
Score = 76 (31.8 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E ++ A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALRTDYNASVSVPDS-SGP-ERILSISA 92
Score = 72 (30.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 38 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 90
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 91 SADIETIGEILKKIIPTL 108
Score = 69 (29.3 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 203
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 204 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 239
Score = 48 (22.0 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 185 CPQSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 243
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 244 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 293
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 120 (47.3 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 38/155 (24%), Positives = 69/155 (44%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT R + + L+ ETG V + V G DR++ I+G +
Sbjct: 46 LTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGISKA 105
Query: 377 SAP-QDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYI 435
A A+L + + T +LL++ NQ+G ++G+ G I ++ +SG +
Sbjct: 106 YAVVARALLEGAPSMGMGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSGVRM 165
Query: 436 RILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+ K+ +P+ E VV + G E +Q A+++I
Sbjct: 166 -VAQKEMLPQ---STERVVEVQGTPEGIQRAVWEI 196
Score = 101 (40.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 42/182 (23%), Positives = 81/182 (44%)
Query: 119 GREEASVADESDNKKEDSVNEG-SVLMDGLNSEKET-----SKVQKALLLVFERMVEVEP 172
G+ +VAD D E V G S ++ G++ T + KA +V ++E P
Sbjct: 62 GKGGKNVADLRD---ETGVKAGVSKVVQGVHDRVLTITGGCEGISKAYAVVARALLEGAP 118
Query: 173 ETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCAL---------ASD 223
+ + + ++LL+ Q+G ++G+ G IK I + + +++
Sbjct: 119 SMGMGGVVSNNGTH-PIKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTE 177
Query: 224 EVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATG 283
VV++ G + +++A+ I L+D+ R ++ NP + P + S GA Y T
Sbjct: 178 RVVEVQGTPEGIQRAVWEICKCLIDDWQRGTGTVLYNPVVRTQPAGATQMGSSGAGYGTS 237
Query: 284 HR 285
+R
Sbjct: 238 NR 239
Score = 96 (38.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
+N E+ + + ++ +GC++G+ GS I+E+RK SGA I I + P + E +
Sbjct: 282 ENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIA---KAPHDET-GERMFT 337
Query: 456 INGEFEAVQEALFQITTRL 474
I G +A + ALF + L
Sbjct: 338 IMGSAKANETALFLLYENL 356
Score = 80 (33.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 30/113 (26%), Positives = 52/113 (46%)
Query: 172 PETEVADQ--ENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI-DKLPTCALAS------ 222
P+ E A + E ++ +R +V S + G ++GKGG + + D+ A S
Sbjct: 29 PDGEPAPKTDEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 88
Query: 223 -DEVVQITGEVDTVRKALKLISHQLLDNSPRDHES--IPGNPTGPSHPLPDHS 272
D V+ ITG + + KA +++ LL+ +P + N T P L H+
Sbjct: 89 HDRVLTITGGCEGISKAYAVVARALLEGAPSMGMGGVVSNNGTHPIKLLISHN 141
Score = 73 (30.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 12 HDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQI 71
+DD+ P+G E + K +Y++ Q + R + + +IGK G+ ++ +
Sbjct: 21 NDDEPRLGPDG-EPAPKTDEEYAQAQ--------LTVRAIVSSKEAGVIIGKGGKNVADL 71
Query: 72 SQDTGVTIRVEETVSGSDERLVVI 95
+TGV V + V G +R++ I
Sbjct: 72 RDETGVKAGVSKVVQGVHDRVLTI 95
Score = 50 (22.7 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 603 IQGEDGACLKQIRQISDAKITITD-PKPGATETVIIISGTPEQTHAAQSLI 652
I G G+ + +IR+ S A+I+I P E + I G+ + A L+
Sbjct: 302 IIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETALFLL 352
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 41/157 (26%), Positives = 82/157 (52%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H ++ + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKKGESV--------KKMREESGARINISEG--NCPERIITLAGPTNAIFKA 63
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 64 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 121
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 122 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 154
Score = 92 (37.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/96 (25%), Positives = 50/96 (52%)
Query: 118 NGREEASVAD-ESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEV 176
+G++ SV ++ +++EG+ + T+ + KA ++ +++ E + + +
Sbjct: 21 HGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE-DISSSM 79
Query: 177 ADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
+ LRL+V ++Q G L+GKGGC IK+I
Sbjct: 80 TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 115
Score = 69 (29.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTPE 643
G+ G +K+IR+ + A++ + D P +TE I I+G P+
Sbjct: 106 GKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ 145
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 96 (38.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 84 (34.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 53/227 (23%), Positives = 96/227 (42%)
Query: 53 PVSKIDGVIGK------DGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSE 106
P ++ +G GK + E + S++T + + + + V+ + N K
Sbjct: 11 PNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 107 NLEASIERSENNGREEA-SVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFE 165
+ AS+ +++G E S++ + + E L +GL T+ Q L
Sbjct: 71 DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL----- 125
Query: 166 RMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQID-------KL- 215
E + E + ++ K S F LRLL+ + G ++G G IK++ KL
Sbjct: 126 ---ESDA-VECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Query: 216 -PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 182 QECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 227
Score = 83 (34.3 bits), Expect = 0.00066, Sum P(3) = 0.00065
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 442
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 443 QIQNAQYLLQNSVKQY 458
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E ++ A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALRTDYNASVSVPDS-SGP-ERILSISA 92
Score = 72 (30.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 38 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 90
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 91 SADIETIGEILKKIIPTL 108
Score = 68 (29.0 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 203
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 204 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 239
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 185 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 243
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 244 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 293
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 96 (38.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 84 (34.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 53/227 (23%), Positives = 96/227 (42%)
Query: 53 PVSKIDGVIGK------DGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSE 106
P ++ +G GK + E + S++T + + + + V+ + N K
Sbjct: 11 PNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 107 NLEASIERSENNGREEA-SVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFE 165
+ AS+ +++G E S++ + + E L +GL T+ Q L
Sbjct: 71 DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL----- 125
Query: 166 RMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQID-------KL- 215
E + E + ++ K S F LRLL+ + G ++G G IK++ KL
Sbjct: 126 ---ESDA-VECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Query: 216 -PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 182 QECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 227
Score = 83 (34.3 bits), Expect = 0.00066, Sum P(3) = 0.00065
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 442
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 443 QIQNAQYLLQNSVKQY 458
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E ++ A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALRTDYNASVSVPDS-SGP-ERILSISA 92
Score = 72 (30.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 38 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 90
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 91 SADIETIGEILKKIIPTL 108
Score = 68 (29.0 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 203
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 204 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 239
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 185 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 243
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 244 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 293
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 96 (38.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 402 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 84 (34.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 53/227 (23%), Positives = 96/227 (42%)
Query: 53 PVSKIDGVIGK------DGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSE 106
P ++ +G GK + E + S++T + + + + V+ + N K
Sbjct: 11 PNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT 70
Query: 107 NLEASIERSENNGREEA-SVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFE 165
+ AS+ +++G E S++ + + E L +GL T+ Q L
Sbjct: 71 DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPL----- 125
Query: 166 RMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQID-------KL- 215
E + E + ++ K S F LRLL+ + G ++G G IK++ KL
Sbjct: 126 ---ESDA-VECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Query: 216 -PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 182 QECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 227
Score = 83 (34.3 bits), Expect = 0.00066, Sum P(3) = 0.00065
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 442
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 443 QIQNAQYLLQNSVKQY 458
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E ++ A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALRTDYNASVSVPDS-SGP-ERILSISA 92
Score = 72 (30.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 38 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 90
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 91 SADIETIGEILKKIIPTL 108
Score = 68 (29.0 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 203
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 204 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 239
Score = 47 (21.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 185 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 243
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 244 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 293
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 123 (48.4 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 340 RSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNR 398
+ L + G IK+ A S R+++I+GP P+ + A Q + + +
Sbjct: 457 KQLARFAGASIKIAPAESPDVTQRMVIITGP--PEAQFKA-QGRIFG-KLKEENFFTAKE 512
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEV-VLIN 457
E + T + V S+ G ++GKGG + E++ L+ A + I+ +DQ P EN+EV V I+
Sbjct: 513 EVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENDEVFVKIS 568
Query: 458 GEFEAVQEA 466
G F A Q A
Sbjct: 569 GHFFASQTA 577
Score = 79 (32.9 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 33/129 (25%), Positives = 56/129 (43%)
Query: 89 DERLVVIEASDNKKETSENLEASIERSENNGREEASVADES--DNKKEDSVNEGSVLMDG 146
D L +N ++ + + E ++ + +EEA VA E + ED + S +MD
Sbjct: 98 DSLLAQYGTVENVEQVNTDTETAVVNVTYSTKEEAKVAVEKLIEQTFEDYSFKVSYIMD- 156
Query: 147 LNSEKETSKVQKALLLVFERMVEVEPETEVADQ-ENTKSSKFVLRLLVLSTQVGCLLGKG 205
+++ + R + +P T + K F LR+LV + VG ++GK
Sbjct: 157 MDAAAALPGTRNRRGGRTSREQDSQPGTSGSSLGSRQKQPDFPLRMLVPTQFVGAIIGKE 216
Query: 206 GCVIKQIDK 214
G IK I K
Sbjct: 217 GLTIKNITK 225
Score = 73 (30.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ G +KQ+ + + A I I + P T+ ++II+G PE AQ I
Sbjct: 448 IIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGPPEAQFKAQGRI 498
Score = 65 (27.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 18/86 (20%), Positives = 39/86 (45%)
Query: 17 HTEPNGKEKSQKLAGDYSENQP-SKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
H+ P G + + D + + I ++L S + +IGK+G + +I +DT
Sbjct: 249 HSTPEGCSTACHMIMDIMQKEAVDTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEEDT 308
Query: 76 GVTIRV---EETVSGSDERLVVIEAS 98
I + ++ + ER ++++ S
Sbjct: 309 ETKITISSLQDLTIYNPERTIIVKGS 334
Score = 64 (27.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 393 AIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEE 452
A+ + + ++L ++ +G L+GK G + ++ + + I I + E
Sbjct: 270 AVDTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLT--IYNPER 327
Query: 453 VVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLN 491
+++ G EA A +I +LR + D +IN+ N
Sbjct: 328 TIIVKGSIEACCRAEVEIMKKLREAYENDV-AAINQQSN 365
Score = 60 (26.2 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 37 QPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG--VTIRVEETVSGSDERLVV 94
Q FP R+L P + +IGK+G + I++ T V I +E +G+ E+ +
Sbjct: 193 QKQPDFP----LRMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN-AGAAEKPIT 247
Query: 95 IEASDNKKETSENLEASIERSE 116
I ++ T+ ++ I + E
Sbjct: 248 IHSTPEGCSTACHMIMDIMQKE 269
Score = 54 (24.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 170 VEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
V P + ++ Q +T + V+ L + + VG ++GK G IKQ+
Sbjct: 418 VPPASGISHQ-HTAPEQEVVYLFIPTQAVGAIIGKKGQHIKQL 459
Score = 48 (22.0 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 181 NTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK 214
+TK ++ + L++L ++ VG L+GK G +K+I++
Sbjct: 272 DTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEE 306
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 66 EMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERS 115
E++ + G VE+ V+ E VV K+E +E IE++
Sbjct: 95 EVLDSLLAQYGTVENVEQ-VNTDTETAVVNVTYSTKEEAKVAVEKLIEQT 143
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 112 (44.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 43/173 (24%), Positives = 81/173 (46%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
+ G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DGGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 96 (38.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQIT 471
I G ++ A + IT
Sbjct: 291 ITGSPVSIALAQYLIT 306
Score = 81 (33.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAF 655
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITAW 308
Score = 81 (33.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 43/175 (24%), Positives = 74/175 (42%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVE-ETVSGSDERLVVIEA-SDNKKE 103
+ R++ P S+ +IGK G + +I + TG ++V + + S ER V + D
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 104 TSENLEASIERSENNGREEASVADESDNKKEDSVNEGSVLMD--GLNSEKETSKVQK-AL 160
+ A I S G S S N+G + G + E +K+Q+ +
Sbjct: 162 CVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSS 221
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKL 215
V V P + Q T S +F LV + +GC++G+ G I +I ++
Sbjct: 222 HAVPFATPSVVPGLDPGTQ--TSSQEF----LVPNDLIGCVIGRQGSKISEIRQM 270
Score = 70 (29.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGNVSRP 100
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 101 (40.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 48/243 (19%), Positives = 96/243 (39%)
Query: 242 ISHQLLD-NSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPK 300
++ L D N ++ES P PT S Q + + ++P
Sbjct: 1 MTESLFDTNFTSENESKP-EPTQQQQQQSTQQTSQQQQQQQPSSSTLTTSIVDQSSTLPS 59
Query: 301 FHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTE 360
+ +D ++ +R+L + S++ ET + + G+
Sbjct: 60 LQDKSNIDA------LINYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSH 113
Query: 361 DRLIVISGPAHPDD---RISAPQDAVLRVQTRIARAIP-------DNREQTVMTRLLVAS 410
+R++ +SG DD +S A++ P N E+T + RLL+ +
Sbjct: 114 ERILTVSGKL--DDCAKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPN 171
Query: 411 NQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+Q+G L+G G+ I +++ + I K +P NE +V + G + + ++L +I
Sbjct: 172 SQMGTLIGSKGARIQQLQNNFNISM-IASKSFLP---GSNERLVELQGTVDDLYDSL-RI 226
Query: 471 TTR 473
+R
Sbjct: 227 ISR 229
Score = 86 (35.3 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 172 PETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI-DKLPTCALAS-------- 222
P +++ NT+ + +LRLL+ ++Q+G L+G G I+Q+ + +AS
Sbjct: 149 PLKQLSSTPNTEETT-ILRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSN 207
Query: 223 DEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPG 259
+ +V++ G VD + +L++IS L++ D SI G
Sbjct: 208 ERLVELQGTVDDLYDSLRIISRCLIE----DFSSIVG 240
Score = 82 (33.9 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 413 IGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEA 466
+G L+GK GS I +RK+SGA I I + I ENE V I G AV +A
Sbjct: 298 VGALIGKRGSRIDGVRKVSGAMIAI--SEAIE---GENERVFTITGSSHAVDKA 346
Score = 68 (29.0 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVI 95
I +RVL + +IG +G+++ I +T + + GS ER++ +
Sbjct: 70 INYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTV 119
Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLI-QAFVMSE 659
G+ G+ + +R++S A I I++ G E V I+G+ A+ +I Q F E
Sbjct: 303 GKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQMIYQNFKREE 358
Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDR 375
+++ +G I + EA+ G +R+ I+G +H D+
Sbjct: 312 VRKVSGAMIAISEAIEGENERVFTITGSSHAVDK 345
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 113 (44.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 43/173 (24%), Positives = 82/173 (47%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
++G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DAGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 99 (39.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLN-PTFLDQVSPFPSFIGRRELSPPG 514
I G ++ A + IT L S P + PT D +PF + +PPG
Sbjct: 291 ITGSPVSIALAQYLITACLE----TAKSTSGGTPGSAPT--DLPAPFSPPLTALPTAPPG 344
Query: 515 M 515
+
Sbjct: 345 L 345
Score = 82 (33.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 316
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGNVSRP 100
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 113 (44.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 43/173 (24%), Positives = 82/173 (47%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
++G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DAGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 98 (39.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLN-PTFLDQVSPFPSFIGRRELSPPG 514
I G ++ A + IT L S P + PT D +PF + +PPG
Sbjct: 291 ITGSPVSIALAQYLITACLE----TAKSTSGGTPGSAPT--DLPAPFSPPLTALPTAPPG 344
Query: 515 M 515
+
Sbjct: 345 L 345
Score = 82 (33.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 316
Score = 70 (29.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGNVSRP 100
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 113 (44.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 43/173 (24%), Positives = 82/173 (47%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
++G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DAGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 100 (40.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 291
Query: 456 INGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLN-PTFLDQVSPFPSFIGRRELSPPG 514
I G ++ A + IT L S P + PT D +PF + +PPG
Sbjct: 292 ITGSPVSIALAQYLITACLE----TAKSTSGGTPSSAPT--DLPAPFSPPLTALPTAPPG 345
Query: 515 M 515
+
Sbjct: 346 L 346
Score = 82 (33.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 259 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 317
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGNVSRP 100
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 97 (39.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 37/154 (24%), Positives = 71/154 (46%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + L QE I + E +R+I ++GP + +
Sbjct: 17 LTIRLLMHGKEVGSIIRKSRESVKKL-QEKSARINISEG--NCPERIITLAGPTNAIFKA 73
Query: 377 SAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIR 436
A + + + I+ ++ ++ + +V ++Q G L+GKG I E+R+ +GA ++
Sbjct: 74 FAM--IIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGKG--TIKEIRESTGAQVQ 129
Query: 437 ILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
G + +P + E + I G ++ E + QI
Sbjct: 130 AAG-NMLP---NSTERAITIAGILPSIIECVKQI 159
Score = 96 (38.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G GA + +IRQ+S A+I +P G+T+ + I+G AQ LI A + SET
Sbjct: 259 IIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINARLSSET 316
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 112 (44.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 40/172 (23%), Positives = 79/172 (45%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
++G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DAGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLG 418
+ I+G H I+ D L ++ V RL++ ++Q G L+G
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGSVS---RPPVTLRLVIPASQCGSLIG 118
Query: 419 KGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
K G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 119 KAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 98 (39.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + IT L
Sbjct: 291 ITGSPVSIALAQYLITACL 309
Score = 82 (33.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 316
Score = 70 (29.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGSVSRP 100
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 112 (44.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 43/173 (24%), Positives = 81/173 (46%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
+ G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DGGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 97 (39.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + IT L
Sbjct: 291 ITGSPVSIALAQYLITACL 309
Score = 82 (33.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 316
Score = 70 (29.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 178 DQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGE 231
++E S LR+L+ +VG ++GK G +K+I + + + E + ITG
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGS 68
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
V A+ +I+ +L D + P N S P
Sbjct: 69 TAAVFHAVSMIAFKL----DEDLCAAPANGGNVSRP 100
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 102 (41.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 38/154 (24%), Positives = 72/154 (46%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + L QE G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIRKSRESVKKL-QEKGARINISEG--NCPERIITLAGPTNAIFKA 70
Query: 377 SAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIR 436
A + + + I+ ++ ++ + +V ++Q G L+GKG I E+R+ +GA ++
Sbjct: 71 FAM--IIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGKGK--IKEIRESTGAQVQ 126
Query: 437 ILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
G + +P + E + I G ++ E + QI
Sbjct: 127 AAG-NMLP---NSTERAITIAGILPSIIECVKQI 156
Score = 89 (36.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
I G A + +IRQ+S A+I +P G+T+ + I+G AQ LI A + SET
Sbjct: 248 IIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINARLSSET 305
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 117 (46.2 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 43/175 (24%), Positives = 85/175 (48%)
Query: 341 SLKQETGCDIKVMEA---VSGTEDRLIVISGPAHPDDRISAPQDAVL---RVQTRIARAI 394
SL+++TG +K+ ++ GT +R+ +I+G + I + ++ R + + I
Sbjct: 123 SLQKDTGARVKMSKSHDFYPGTTERVCLITGST---EAIMVVMEFIMDKIREKPDLTNKI 179
Query: 395 PDN-----REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASE 449
D +E+ ++LV ++ G ++GKGG+ I ++++ SG+Y++I Q P S
Sbjct: 180 VDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQI---SQKPTDVSL 236
Query: 450 NEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + I G+ E + A I +++ D P LN ++ D P +F
Sbjct: 237 QERCITIIGDKENNKNACKMILSKI----VED--PQSGTCLNVSYADVSGPVANF 285
Score = 71 (30.1 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 603 IQGEDGACLKQIRQISDAKITITDP---KPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G G L +I+ +S A + I+ PG ++ I+G P AQ LI+ + +E
Sbjct: 531 ILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKI-NE 589
Query: 660 TET 662
ET
Sbjct: 590 EET 592
Score = 51 (23.0 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 179 QENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
Q++ + + +++LV + G ++GKGG I + K
Sbjct: 91 QQSFCETTYHMKILVPAVASGAIIGKGGETIASLQK 126
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 110 (43.8 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 40/172 (23%), Positives = 79/172 (45%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
++G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DAGLEEGPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLG 418
+ I+G H I+ D L ++ V RL++ ++Q G L+G
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGSVS---RPPVTLRLVIPASQCGSLIG 118
Query: 419 KGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
K G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 119 KAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
Score = 98 (39.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 290
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + IT L
Sbjct: 291 ITGSPVSIALAQYLITACL 309
Score = 82 (33.9 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 605 GEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETETT 663
G G+ + +IRQ+S A I I + GA E + I+G+P AQ LI A + + T+
Sbjct: 258 GRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTS 316
Score = 66 (28.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 184 SSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDE------VVQITGEVDTVRK 237
S LR+L+ +VG ++GK G +K+I + + + E + ITG V
Sbjct: 15 SITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFH 74
Query: 238 ALKLISHQLLDNSPRDHESIPGNPTGPSHP 267
A+ +I+ +L D + P N S P
Sbjct: 75 AVSMIAFKL----DEDLCAAPANGGSVSRP 100
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 143 (55.4 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 41/157 (26%), Positives = 81/157 (51%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKA 71
Query: 377 SAPQDAVLRVQTRIARAIPDNREQT---VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
A + +++ I+ ++ ++ + V RL+V ++Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E + I G +++ E + QI
Sbjct: 130 QVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQI 162
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 109 (43.4 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 340 RSLKQETGCDIKVMEAVSGTE-DRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNR 398
+ L G IK+ S E +R+++I+GP P+ + A Q + + +
Sbjct: 296 KELAHFAGASIKIAAPESPDEPERMVIITGP--PEAQFKA-QGRIYG-KLKEENFFTAKE 351
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEV-VLIN 457
E + + V S G ++GKGG + E++ L+ A + I+ +DQ P EN++V V I
Sbjct: 352 EVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENDDVFVKII 407
Query: 458 GEFEAVQEA 466
G F A Q A
Sbjct: 408 GHFFASQTA 416
Score = 84 (34.6 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 41/202 (20%), Positives = 88/202 (43%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKS-FPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75
H+ G ++ ++ + E + + + + ++L S + +IGK+G + +I QDT
Sbjct: 111 HSSKEGCSQACRMILEIMEKEANDTKIVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDT 170
Query: 76 GVTIRV---EETVSGSDERLVVIEASDNK--KETSENLEASIERSENNGREEASVADESD 130
G I + ++ + ER + + + K E ++ E EN + ASV +++
Sbjct: 171 GTKITISALQDLTVYNQERTISVRGGVEECCKAEGEIMKKLREAHEN---DVASVNQQTN 227
Query: 131 NKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLR 190
+++ + G++ S ++ +L P + +QE V+
Sbjct: 228 MMAGLNLSALGIFSSGMSVLPPASGLRGSL----STPANYSPLLQGGEQE-------VVY 276
Query: 191 LLVLSTQVGCLLGKGGCVIKQI 212
L + + VG L+GK G IK++
Sbjct: 277 LFIPTPAVGALIGKKGQHIKEL 298
Score = 68 (29.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 24/101 (23%), Positives = 44/101 (43%)
Query: 29 LAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG--VTIRVEETVS 86
+ G Q + P R+L P + +IGK+G + I++ T V I +E +
Sbjct: 47 MGGPQGPRQRQQELP----LRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN-A 101
Query: 87 GSDERLVVIEASDNKKETSENLEASIERSENNGREEASVAD 127
G+ E+ + I +S K+ S+ +E E + V +
Sbjct: 102 GATEKAITIHSS--KEGCSQACRMILEIMEKEANDTKIVEE 140
Score = 59 (25.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 183 KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+ + LR+LV + VG ++GK G IK I K
Sbjct: 56 RQQELPLRILVPTQFVGAIIGKEGLTIKNITK 87
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 132 (51.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 70/307 (22%), Positives = 136/307 (44%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-V 225
+ ++TK ++ + L++L + VG L+GK G +K+I++ L L + E
Sbjct: 268 EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERT 327
Query: 226 VQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA--PYATG 283
+ + G ++T KA + I ++ ++ D ++ +H +P ++++ G P ++G
Sbjct: 328 ITVKGSIETCAKAEEEIMKKIRESYENDIAAM----NLQAHLIPGLNLNALGLFPPSSSG 383
Query: 284 HRDVADIHLPMPPSIPKFHESGVLDRPK--PSPEILTFRLLCHDERXXXXXXXXXXXXRS 341
+P PP++ + P PE T L +
Sbjct: 384 --------IP-PPAVSVASAAAAASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQ 434
Query: 342 LKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQ 400
L + G IK+ A + R+++I+GP P+ + A Q + + + E
Sbjct: 435 LSRFAGASIKIAPAEGPDAKLRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEV 490
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGE 459
+ + V S G ++GKGG + E++ L+ A + ++ +DQ P EN++VV+ I G
Sbjct: 491 KLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDQVVVKITGH 546
Query: 460 FEAVQEA 466
F A Q A
Sbjct: 547 FYACQLA 553
Score = 60 (26.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEASDNKKET 104
+ R+L P + +IGK+G + I++ T I + + G+ E+ + I ++ T
Sbjct: 197 VPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEGCST 256
Query: 105 SENLEASIERSE 116
+ + I + E
Sbjct: 257 ACKIIMEIMQKE 268
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 120 (47.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 68/304 (22%), Positives = 136/304 (44%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQID-----KLPTCALAS------DEV 225
+ ++TK++ V L++L + VG L+GK G +K+++ K+ +L +
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 226 VQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHR 285
+ + G ++ KA + I ++ + D ++ + SH +P ++++ G A+ +
Sbjct: 327 ITVKGSIENCCKAEQEIMKKVREAYENDVAAM----SLQSHLIPGLNLAAVGLFPASSNA 382
Query: 286 DVADIHLPMPPSIPKFHESGVLDRPK-PSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQ 344
+P PPS SG PE T + + + L +
Sbjct: 383 ------VPPPPS----SVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSR 432
Query: 345 ETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVM 403
IK+ + ++ R++VI+GP P+ + A Q + + + E +
Sbjct: 433 FASASIKIAPPETPDSKVRMVVITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLE 488
Query: 404 TRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEA 462
T + V ++ G ++GKGG + E++ L+ A + ++ +DQ P ENE+V++ I G F A
Sbjct: 489 THIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENEQVIVKIIGHFYA 544
Query: 463 VQEA 466
Q A
Sbjct: 545 SQMA 548
Score = 72 (30.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P K P I R+L P + +IGK+G + I++ T I V + G+ E+ + I
Sbjct: 188 PVKQQPVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ + + I + E ++ ADE
Sbjct: 248 STPEGCSAACKMILEIMQKE---AKDTKTADE 276
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 102 (41.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 305 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 361
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 362 ATQAAQYLITQRITY 376
Score = 92 (37.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 25/94 (26%), Positives = 54/94 (57%)
Query: 382 AVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKD 441
++L+ QT + PD +Q +++V ++ G ++GKGG+ + + + SGA++++
Sbjct: 40 SILQPQTTVN---PDRIKQV---KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---S 90
Query: 442 QIPKCASENEEVVLINGEFEAVQEALFQITTRLR 475
Q P + E VV ++GE E ++A+ I +++
Sbjct: 91 QKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQ 124
Score = 86 (35.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/128 (21%), Positives = 61/128 (47%)
Query: 165 ERMVEVEPETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIK----------QID 213
+ + + EP + + Q + ++++V ++ G ++GKGG +K Q+
Sbjct: 31 QNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 90
Query: 214 KLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSV 273
+ P + VV ++GE + RKA++LI Q + P+ + + + P+ + +
Sbjct: 91 QKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNP 149
Query: 274 SSQGAPYA 281
+ G+PYA
Sbjct: 150 T--GSPYA 155
Score = 73 (30.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLI 652
I G+ G L + ++++ A+I I+ PG + I+GTP T AAQ LI
Sbjct: 318 ILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 370
Score = 62 (26.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 57 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 116
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 117 -ELIIQKIQEDPQSG 130
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 140 (54.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 54/217 (24%), Positives = 92/217 (42%)
Query: 265 SHPLPDHSVSSQGAPYATGHRDVADIH-LP-----MPPSIPKFHESGVLDRPKPSPE--- 315
SH LP VSS P + D DIH P M ++ E + PK E
Sbjct: 168 SHILP---VSSSTTPLKLENMDTTDIHETPIADETMTDAVNVGDEGDLEVAPKTEEEYAQ 224
Query: 316 -ILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDD 374
+LT R + + L+ ETG V + V G DR++ ++G
Sbjct: 225 SMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGTA 284
Query: 375 RISA-PQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA 433
R A +L ++ + T RLL++ NQ+G ++G+ G I ++ SG
Sbjct: 285 RAYALVAKGLLEGAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGV 344
Query: 434 YIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+ + K+ +P+ E +V + G E +++A+++I
Sbjct: 345 RM-VAQKEMLPQ---STERIVEVQGTPEGIEKAIWEI 377
Score = 91 (37.1 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 394 IPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEV 453
+ ++ E+ + + ++ +GC++G+GG+ I E+R+ SGA I I + P + E +
Sbjct: 454 VTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIA---KAPHDET-GERM 509
Query: 454 VLINGEFEAVQEALFQITTRL 474
I G +A ++AL+ + L
Sbjct: 510 FTIMGSAQANEKALYLLYENL 530
Score = 85 (35.0 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 32/115 (27%), Positives = 52/115 (45%)
Query: 168 VEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI-DKLPTCALAS---- 222
+EV P+TE E S LR +V S + G ++GK G + + D+ A S
Sbjct: 212 LEVAPKTE----EEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 267
Query: 223 ---DEVVQITGEVDTVRKALKLISHQLLDNSPRDHES--IPGNPTGPSHPLPDHS 272
D V+ +TG + +A L++ LL+ +P+ + N T P L H+
Sbjct: 268 GVHDRVLTVTGALSGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHPIRLLISHN 322
Score = 48 (22.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 603 IQGEDGACLKQIRQISDAKITITD-PKPGATETVIIISGTPEQTHAAQSLI 652
I G G + +IR+ S A+I+I P E + I G+ + A L+
Sbjct: 476 IIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLL 526
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 90 (36.7 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQ+R S A I I +P G+ + VI I+GT +Q A L+Q
Sbjct: 378 IIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQ 428
Score = 84 (34.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ ++ + G ++GKGG I ++R SGA I+I D+ P SE + V+ I G +
Sbjct: 364 ITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKI---DE-PLEGSE-DRVITITGTQD 418
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 419 QIQNAPYLLQNSVKQY 434
Score = 81 (33.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 31 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALHTDYNASVSVPDSSGPERI 87
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 88 LS-ISADIETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 144
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
++ KL C +D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 145 ELRENTQTTIKLFQECCPHPTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 203
Score = 71 (30.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 26/93 (27%), Positives = 45/93 (48%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E + A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALHTDYNASVSVPDS-SGP-ERILSISA 92
Score = 69 (29.3 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 173 ETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQID-------KLPTCALASDE 224
E E A + + + + V LR+L+ S G ++GKGG IK + +P + +
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSS-GPER 86
Query: 225 VVQITGEVDTVRKALKLI 242
++ I+ +++T+ + LK I
Sbjct: 87 ILSISADIETIGEILKKI 104
Score = 67 (28.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHPTDRVVLIGGKPDRVV 179
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 180 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 215
Score = 46 (21.3 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 29/110 (26%), Positives = 40/110 (36%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C +D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 161 CPHPTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 219
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 220 DDRRGRPVGFPMRGRGGFDKMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 269
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 102 (41.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 301 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 357
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 358 ATQAAQYLITQRITY 372
Score = 82 (33.9 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 182 TKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCALASDEVVQITGE 231
T S ++++V ++ G ++GKGG +K Q+ + P + VV ++GE
Sbjct: 45 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 104
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYA 281
+ RKA++LI Q + P+ + + + P+ + + + G+PYA
Sbjct: 105 PEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYA 151
Score = 62 (26.9 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 112
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 113 -ELIIQKIQEDPQSG 126
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 102 (41.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 301 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 357
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 358 ATQAAQYLITQRITY 372
Score = 82 (33.9 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 182 TKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCALASDEVVQITGE 231
T S ++++V ++ G ++GKGG +K Q+ + P + VV ++GE
Sbjct: 45 TTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGE 104
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYA 281
+ RKA++LI Q + P+ + + + P+ + + + G+PYA
Sbjct: 105 PEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYA 151
Score = 61 (26.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + + + +G +++ + G + ER+V + E N+K
Sbjct: 53 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 112
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 113 -ELIIQKIQEDPQSG 126
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 131 (51.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 38/154 (24%), Positives = 73/154 (47%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R+I ++GP +
Sbjct: 4 LTIRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITLAGPTNFKSFA 61
Query: 377 SAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIR 436
+ + + + +R + V L+V ++Q G L+GKGG I E+R+ +G ++
Sbjct: 62 MIIDKLEEDISSSMTNSTAASRPR-VTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQ 120
Query: 437 ILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+ G D +P + E + I G +++ E + QI
Sbjct: 121 VAG-DMLP---NSTERAITIAGIPQSIIECVKQI 150
Score = 86 (35.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 39/159 (24%), Positives = 74/159 (46%)
Query: 158 KALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI----- 212
K+ ++ +++ E + + + + + + L+V ++Q G L+GKGGC IK+I
Sbjct: 58 KSFAMIIDKLEE-DISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTG 116
Query: 213 -------DKLPTCALASDEVVQITGEVDTVRKALK---LISHQLLDNSPRDHESIPGNPT 262
D LP +++ + I G ++ + +K ++ + L SP+ +IP P
Sbjct: 117 VQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVMLKTLSQSPKG-VTIPYLPK 172
Query: 263 GPSHPL---PDHSVSSQGAPYATGHRDVADIH-LPMPPS 297
PS P+ + + QG YA D+ +H L M S
Sbjct: 173 -PSSPVIFTGGQAYTIQGR-YAVPQPDLTKLHRLAMQQS 209
Score = 80 (33.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETS 105
+ R+L ++ +IGKDGE + ++ +++G I + E ER++ + N K +
Sbjct: 4 LTIRLLMHGKEVGSIIGKDGESVKKMRKESGARISISE--GNCPERIITLAGPTNFKSFA 61
Query: 106 ---ENLEASIERSENN 118
+ LE I S N
Sbjct: 62 MIIDKLEEDISSSMTN 77
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 102 (41.0 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 33/129 (25%), Positives = 68/129 (52%)
Query: 340 RSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNR 398
+ L + G IK+ A + ++ R+++++GP P+ + A Q + + +
Sbjct: 431 KQLSRFAGASIKIAPAEAPDSKMRMVIVTGP--PEAQFKA-QGRIYG-KLKEENFFGPKE 486
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-IN 457
E + T + VA+ G ++GKGG + E++ L+ A + ++ ++Q P E+++V++ I
Sbjct: 487 EVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEV-VVPREQTP---DEHDQVIVKII 542
Query: 458 GEFEAVQEA 466
G F A Q A
Sbjct: 543 GHFYASQLA 551
Score = 69 (29.3 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 7 PSKRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPG-----GIMFRVLCPVSKIDGVI 61
P + D NG+ G + P P I R+L P + +I
Sbjct: 155 PDENSEVDSQRGPDNGRRPGYGPRGTSRQMSPGSGIPSKHQHADIPLRLLVPTQYVGAII 214
Query: 62 GKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEAS 98
GK+G + I++ T I V + G+ E+ + I ++
Sbjct: 215 GKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHST 252
Score = 62 (26.9 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGG--IMFRVLCPVSKIDGVIGKDGEMMSQISQD 74
H+ P G + ++ + NQ +K + +VL + + +IGK+G + ++ QD
Sbjct: 250 HSTPEGCSAACRMILEIM-NQEAKDTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQD 308
Query: 75 TGVTIRV---EETVSGSDERLVVIEAS 98
T I + ++ + ER + ++ S
Sbjct: 309 TDTKITISPLQDLTLYNPERTITVKGS 335
Score = 60 (26.2 bits), Expect = 0.00022, Sum P(4) = 0.00022
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 189 LRLLVLSTQVGCLLGKGGCVIKQIDK 214
LRLLV + VG ++GK G I+ I K
Sbjct: 201 LRLLVPTQYVGAIIGKEGATIRNITK 226
Score = 53 (23.7 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 175 EVADQE--NTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK 214
E+ +QE +TK++ V L++L + VG L+GK G +K++++
Sbjct: 265 EIMNQEAKDTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQ 307
Score = 45 (20.9 bits), Expect = 0.00022, Sum P(4) = 0.00022
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 57 IDGVIGKDG--EMMSQISQDT-----GVTIRVEETVSGSDERLVVIEASDNKKETS---- 105
+DG++ + G E Q++ D+ VT E + ++L + +N S
Sbjct: 97 LDGLLAQYGTVENCEQVNTDSETAVVNVTYGTREQARQAIQKLNGYQFDNNALRVSYIPD 156
Query: 106 ENLEASIERSENNGR 120
EN E +R +NGR
Sbjct: 157 ENSEVDSQRGPDNGR 171
Score = 44 (20.5 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 568 PQGLMEVGGPMG 579
PQG+ E+G P G
Sbjct: 579 PQGMTELGSPQG 590
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 102 (41.0 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 329 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 385
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 386 ATQAAQYLITQRITY 400
Score = 82 (33.9 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 182 TKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCALASDEVVQITGE 231
T S ++++V ++ G ++GKGG +K Q+ + P + VV ++GE
Sbjct: 73 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 132
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYA 281
+ RKA++LI Q + P+ + + + P+ + + + G+PYA
Sbjct: 133 PEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYA 179
Score = 62 (26.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 81 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 140
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 141 -ELIIQKIQEDPQSG 154
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 124 (48.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 70/307 (22%), Positives = 135/307 (43%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALASDE-V 225
+ ++TK ++ + L++L + VG L+GK G +K+I++ L L + E
Sbjct: 276 EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERT 335
Query: 226 VQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA--PYATG 283
+ + G ++T KA + + ++ ++ D ++ +H +P ++++ G P ++G
Sbjct: 336 ITVKGSIETCAKAEEEVMKKIRESYENDIAAM----NLQAHLIPGLNLNALGLFPPSSSG 391
Query: 284 HRDVADIHLPMPPSIPKFHESGVLDRPK--PSPEILTFRLLCHDERXXXXXXXXXXXXRS 341
+P PPS + P PE T L +
Sbjct: 392 --------MP-PPSAGVSSPTTSASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQ 442
Query: 342 LKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQ 400
L + G IK+ A + R+++I+GP P+ + A Q + + + E
Sbjct: 443 LSRFAGASIKIAPAEGPDAKLRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEV 498
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGE 459
+ + V S G ++GKGG + E++ L+ A + ++ +DQ P EN++VV+ I G
Sbjct: 499 KLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDQVVVKITGH 554
Query: 460 FEAVQEA 466
F A Q A
Sbjct: 555 FYASQLA 561
Score = 63 (27.2 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 23/102 (22%), Positives = 46/102 (45%)
Query: 1 MSLPLTPSKRPHDDDNHTEPNGKEK-SQK-LAGDYSENQPSKSFPGG-IMFRVLCPVSKI 57
M+ P +PS++ P G+ Q+ A S ++ P + R+L P +
Sbjct: 158 MATPQSPSQQLQQPQQQ-HPQGRRGFGQRGPARQGSPGAAARPKPQSEVPLRMLVPTQFV 216
Query: 58 DGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEAS 98
+IGK+G + I++ T I + + G+ E+ + I ++
Sbjct: 217 GAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHST 258
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 102 (41.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFE 461
+ + V N +G +LGKGG + E ++L+GA I+I K + +P + N +V I G
Sbjct: 333 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-ITGTPA 389
Query: 462 AVQEALFQITTRLRH 476
A Q A + IT R+ +
Sbjct: 390 ATQAAQYLITQRITY 404
Score = 82 (33.9 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 182 TKSSKFVLRLLVLSTQVGCLLGKGGCVIK----------QIDKLPTCALASDEVVQITGE 231
T S ++++V ++ G ++GKGG +K Q+ + P + VV ++GE
Sbjct: 77 TTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGE 136
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYA 281
+ RKA++LI Q + P+ + + + P+ + + + G+PYA
Sbjct: 137 PEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNPT--GSPYA 183
Score = 62 (26.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 49 RVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSD--ERLVVI--EASDNKKET 104
+++ P S +IGK G + I + +G +++ + G + ER+V + E N+K
Sbjct: 85 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAV 144
Query: 105 SENLEASIERSENNG 119
E + I+ +G
Sbjct: 145 -ELIIQKIQEDPQSG 158
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 131 (51.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 43/158 (27%), Positives = 74/158 (46%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + + S +R++ I+G + +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSS--PERIVTITGASEVIFKA 74
Query: 377 SAPQDAVLRVQTRIARAIPDN--REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A A + +A I V RL+ ++Q G L+GKGGS I E+R+ +GA
Sbjct: 75 FA-MIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQ 133
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITT 472
+++ G D +P E V I+G A+ + + I T
Sbjct: 134 VQVAG-DLLP---DSTERAVTISGTPHAITQCVKHICT 167
Score = 89 (36.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/100 (29%), Positives = 42/100 (42%)
Query: 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEF 460
T+ RLL+ ++G ++GK G + +MR+ SGA I I D S E +V I G
Sbjct: 16 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SD-----GSSPERIVTITGAS 68
Query: 461 EAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSP 500
E + +A I + S P L V P
Sbjct: 69 EVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFP 108
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 605 GEDGACLKQIRQISDAKITIT-DPKPGATETVIIISGTP 642
G+ G+ +K+IR+ + A++ + D P +TE + ISGTP
Sbjct: 117 GKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTP 155
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 134 (52.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 75/327 (22%), Positives = 140/327 (42%)
Query: 165 ERMVEVEPETEVADQENTKS---SKFVLRLLVLSTQVGCLLGKGGCVIKQI----DKLPT 217
+R++EV + ++ + S S+ L++L + +G ++GK G IK+I D T
Sbjct: 155 KRILEVMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKIT 214
Query: 218 CALASD-------EVVQITGEVDTVRKALKLISHQLLDNSPRDHESI-PGNPTGPS-HPL 268
+ +D ++ + G ++ + +A IS +L + D +++ P + P HP+
Sbjct: 215 VSSINDINSFNLERIITVKGLIENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPM 274
Query: 269 PDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPS--PEIL--TFRLLCH 324
S G + T +P P S F S P P L T L
Sbjct: 275 AMMSTPGNGMVFNTS--------MPFP-SCQSFAMSKTPASVVPPVFPNDLQETTYLYIP 325
Query: 325 DERXXXXXXXXXXXXRSLKQETGCDIKV--MEA---VSGTEDRLIVISGPAHPDDRISAP 379
+ RS+ + + +K+ ++A + +R + I G P+ + A
Sbjct: 326 NNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGT--PEGQWKAQ 383
Query: 380 QDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILG 439
+++ D+ TV LLVAS+Q+G ++GKGG + E+++++G+ I++
Sbjct: 384 YMIFEKMREEGFMCGTDDVRLTV--ELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPE 441
Query: 440 KDQIPKCASENEEVVLINGEFEAVQEA 466
P + E V I G F +VQ A
Sbjct: 442 HALAPPSGGDEETPVHIIGLFYSVQSA 468
Score = 52 (23.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 24 EKSQKLAGDYSENQ-PSKSFPG---GIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTI 79
+K+Q+ + N P PG R+L + +IG+ G + I+Q + +
Sbjct: 67 DKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARV 126
Query: 80 RV--EETVSGSDERLVVI 95
V +E V GS E+ + I
Sbjct: 127 DVHRKENV-GSLEKSITI 143
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 104 (41.7 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 34/147 (23%), Positives = 76/147 (51%)
Query: 342 LKQETGCDIKVMEAVS---GTEDRLIVISGPAHPDDRISA-PQDAVLRVQTRIARAIPDN 397
L++ETG IK+ ++ GT +R+ +I G + + + + + +A+ P +
Sbjct: 58 LQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVS 117
Query: 398 --REQTVMT-------RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCAS 448
+ QT + +++V ++ G ++GKGG+ + + + SGA++++ Q P +
Sbjct: 118 ILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGIN 174
Query: 449 ENEEVVLINGEFEAVQEALFQITTRLR 475
E VV ++GE E ++A+ I +++
Sbjct: 175 LQERVVTVSGEPEQNRKAVELIIQKIQ 201
Score = 89 (36.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V LI G EA+
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLIQGTVEAL 92
Query: 464 QEALFQITTRLR 475
I ++R
Sbjct: 93 NAVHGFIAEKIR 104
Score = 86 (35.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/128 (21%), Positives = 61/128 (47%)
Query: 165 ERMVEVEPETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIK----------QID 213
+ + + EP + + Q + ++++V ++ G ++GKGG +K Q+
Sbjct: 108 QNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS 167
Query: 214 KLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSV 273
+ P + VV ++GE + RKA++LI Q + P+ + + + P+ + +
Sbjct: 168 QKPDGINLQERVVTVSGEPEQNRKAVELII-QKIQEDPQSGSCLNISYANVTGPVANSNP 226
Query: 274 SSQGAPYA 281
+ G+PYA
Sbjct: 227 T--GSPYA 232
Score = 79 (32.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS---GSDERLVVIEAS 98
G +VL P +IGK G+ + Q+ ++TG TI++ ++ G+ ER+ +I+ +
Sbjct: 31 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 88
Score = 77 (32.2 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 165 ERMVEVEPETEVADQENT-KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
+R +E PE + NT + ++ L++L+ S G ++GKGG I Q+ K
Sbjct: 10 KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK 60
Score = 73 (30.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLI 652
+I G+ GA +K I + S A + ++ G E V+ +SG PEQ A LI
Sbjct: 144 LIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 196
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 112 (44.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 62/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R++VI+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVVITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 74 (31.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K P I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQPVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 96 (38.9 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 367 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 417
Score = 87 (35.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 46/176 (26%), Positives = 79/176 (44%)
Query: 102 KETSENLEA--SIERSENNGRE-EASVADESDNKK--EDSVNEGSVLMDGLNSEKETSKV 156
K +E++E + +RS N E + +S N K N + D E+ S +
Sbjct: 21 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNIKALRTDYNASVSVPDSSGPERILS-I 79
Query: 157 QKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQID- 213
+ + E + ++ P E + ++ K S F LRLL+ + G ++G G IK++
Sbjct: 80 SADIETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRE 137
Query: 214 ------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 138 NTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 192
Score = 83 (34.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 353 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 407
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 408 QIQNAQYLLQNSVKQY 423
Score = 68 (29.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464
RLL+ + G ++G G+ I E+R+ + I++ + C + VVLI G+ + V
Sbjct: 113 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVV 168
Query: 465 EALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
E + +I L +P +P F D+ + F
Sbjct: 169 ECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 204
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 97 (39.2 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 35/156 (22%), Positives = 78/156 (50%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL + + ++E+G + + E +R+I ++GP + +
Sbjct: 26 LTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEG--NCPERIITLAGPTNATFKA 82
Query: 377 SAPQDAVLRVQTRIARAIPDNR--EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A +++++ +R++ ++ + V +RL+V +Q G L+GKG I E+ + +G
Sbjct: 83 FA----MIKLEEDRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGP- 137
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + +E+ + I +++ E + QI
Sbjct: 138 VQVAG-DMLP---NSSEQAIPIASIPQSIIECVNQI 169
Score = 83 (34.3 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETET 662
I G GA + +I Q+S A+I I +P+ G+T+ + I+G AQ LI + ET
Sbjct: 296 IIGRQGAKINEIHQMSGAQIKIANPE-GSTDRQVTITGPAASISLAQYLINVRLSPETGG 354
Query: 663 T 663
T
Sbjct: 355 T 355
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 91 (37.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 20 PNGKEKSQKLAG---DYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQ 73
P E++++L G D N P S+ + +L P SK+ VIGK G+ + Q+ +
Sbjct: 137 PESIEQAKRLLGQIVDRCRNGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQE 196
Query: 74 DTGVT-IRVEETV--SGSDERLVVIEASDNKKETSENLEASIERSENNG 119
TGV I +++ +GSD+ L I K + + L I R ++ G
Sbjct: 197 RTGVKMIMIQDDPMPTGSDKPLR-ISGDPYKVQQARELVVEIIREKDQG 244
Score = 73 (30.8 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 31/133 (23%), Positives = 58/133 (43%)
Query: 155 KVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIKQI 212
KVQ+A LV E ++ + + + + S+ + + V VG ++G+ G +IK+I
Sbjct: 226 KVQQARELVVE-IIREKDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKI 284
Query: 213 DK--------LPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGP 264
P ++ D V Q+ G+ + + A+ LI+ + RD P P G
Sbjct: 285 QNDAGVRIQFKPDDGISPDRVAQVMGQPERCQHAVHLINELVQTAQERDGFGGPLGPRGR 344
Query: 265 SHPLPDHSVSSQG 277
D ++ + G
Sbjct: 345 GRGRGDWNIGTPG 357
Score = 63 (27.2 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 602 IIQGEDGACLKQIRQISDAKITIT-DPKPGATETV--IIISGTPEQTHAAQSLI 652
++ G+ G +K I Q S A + + +P P V I G+P+Q A+ LI
Sbjct: 373 LVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEMARQLI 426
Score = 58 (25.5 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 408 VASNQIGCLLGKGGSIIAEMRKLSGAYIRI 437
+ +++ G ++GKGG I + + SGA++ +
Sbjct: 366 IPADKCGLVIGKGGETIKNINQQSGAHVEL 395
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 119 (46.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 33/127 (25%), Positives = 55/127 (43%)
Query: 7 PSKRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGE 66
PS+ H DD +T G S K ++ + P I R+ CPV + ++G+ GE
Sbjct: 128 PSESDHADDQNT---GSSSSSKPVSNHRDRDD----PTFIQLRMYCPVKEASTIVGRKGE 180
Query: 67 MMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIERSENNGREEASVA 126
++ + + V I V E + G ER+V ++ + L + E E AS+
Sbjct: 181 TINHLREKANVRITVSENLKGVPERIVAVKGPAENVARAFGLITRVILEEPED-EPASIN 239
Query: 127 DESDNKK 133
+ N K
Sbjct: 240 SQQYNLK 246
Score = 114 (45.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 44/213 (20%), Positives = 85/213 (39%)
Query: 309 RPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISG 368
R + P + R+ C + L+++ I V E + G +R++ + G
Sbjct: 152 RDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREKANVRITVSENLKGVPERIVAVKG 211
Query: 369 PAHPDDRISAPQDAVLRVQTRIARAIPDN-REQTVMTRLLVASNQIGCLLGKGGSIIAEM 427
PA + ++ + RV P + Q +LL+ IG ++GK G E+
Sbjct: 212 PA---ENVARAFGLITRVILEEPEDEPASINSQQYNLKLLIPHPMIGFIIGKQGLKFREI 268
Query: 428 RKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSIN 487
+ S A ++ ++ +P + V+ + G +A+ A++ I + H ++
Sbjct: 269 EENSAAKLKA-AENALPY---STDRVLSVMGVGDAIHIAVYYIAQVMLEH--KEVLKKHK 322
Query: 488 RPL-NPTFLDQVSPFPSFIGRRELSPPG-MYSN 518
L NP P +G R+ PP Y+N
Sbjct: 323 VVLYNPA---NYQPTDQSLGGRQRQPPSNSYNN 352
Score = 106 (42.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 53/201 (26%), Positives = 94/201 (46%)
Query: 117 NNGREEASVA-DESDNKKEDSVNEGSVLMDGLNSEKETSKVQKALLLVFERMVEVEPETE 175
N+ RE+A+V S+N K V E V + G V +A L+ R++ EPE E
Sbjct: 183 NHLREKANVRITVSENLK--GVPERIVAVKG-----PAENVARAFGLI-TRVILEEPEDE 234
Query: 176 VADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQID-----KLPTC--AL--ASDEVV 226
A + S ++ L+LL+ +G ++GK G ++I+ KL AL ++D V+
Sbjct: 235 PA---SINSQQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENALPYSTDRVL 291
Query: 227 QITGEVDTVRKALKLISHQLLDNSP--RDHESIPGNPTGPSHPLPDHSVSS-QGAPYATG 283
+ G D + A+ I+ +L++ + H+ + NP ++ D S+ Q P +
Sbjct: 292 SVMGVGDAIHIAVYYIAQVMLEHKEVLKKHKVVLYNPA--NYQPTDQSLGGRQRQPPSNS 349
Query: 284 HRDVADIHLPMPP-SIPKFHE 303
+ + +PP S P H+
Sbjct: 350 YNNPMGYQAKLPPFSKPPQHQ 370
Score = 66 (28.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 103 ET-SENLEASIER-SENNGREEASVADESDNKKEDSVNEGSVLMDGLNSE------KETS 154
ET + N+ ++++R +E+ E + + + D++N S+ L+SE KE
Sbjct: 26 ETVNHNITSTLKRKNEDADDNEGNEQSANSHSGNDTINSSSIKRIALDSEQLDLQDKEEE 85
Query: 155 KVQKALLLVFERMVEVEPETEVADQENTKSSK 186
Q A ++ +E E+E D++N ++K
Sbjct: 86 LQQTAPIITNNSTSHLETESEELDKQNEDANK 117
Score = 63 (27.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 406 LLVASNQIGCLLGKGGSIIAEMRKLSGA-YIRIL-GKDQIPKCAS----ENEEVVLINGE 459
+ VA++ IG ++GK G+ I +R+ S Y++I K Q N + + G
Sbjct: 446 VFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTGT 505
Query: 460 FEAVQEALFQITTRL 474
++Q A++ I R+
Sbjct: 506 LNSIQTAIYLINQRI 520
Score = 53 (23.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLIQAFVMSE 659
I G+ G ++I + S AK+ + P +T+ V+ + G + H A I A VM E
Sbjct: 257 IIGKQGLKFREIEENSAAKLKAAENALPYSTDRVLSVMGVGDAIHIAVYYI-AQVMLE 313
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 102 (41.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 36/125 (28%), Positives = 58/125 (46%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + R L +E G I ++E +R+I +G + +
Sbjct: 14 LTIRLLMHGKEVGSIMGKKGESARKLCEECGTLINILE--ENCLERIITFAGQRNAIFKA 71
Query: 377 SAPQDAVLR--VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A L + + IA + +R +V L+V Q G L+GKGG I E+R+ +GA
Sbjct: 72 FAMIIDKLEGDLSSSIANSTAASRP-SVNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQ 130
Query: 435 IRILG 439
+++ G
Sbjct: 131 VQVAG 135
Score = 78 (32.5 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 152 ETSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQ 211
+ + + KA ++ +++ E + + +A+ L L+V Q G L+GKGGC IK+
Sbjct: 64 QRNAIFKAFAMIIDKL-EGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKE 122
Query: 212 I 212
I
Sbjct: 123 I 123
Score = 75 (31.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 608 GACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660
GA + ++ Q A+I I +P G+T+ + I+G+ AQ LI + SET
Sbjct: 272 GAEINEVCQACGAQIKIANPMEGSTDWQVTITGSTASISLAQYLISVRLSSET 324
Score = 51 (23.0 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDN 100
+ R+L ++ ++GK GE ++ ++ G I + E ER++ N
Sbjct: 14 LTIRLLMHGKEVGSIMGKKGESARKLCEECGTLINILE--ENCLERIITFAGQRN 66
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 96 (38.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 365 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 415
Score = 83 (34.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 47/180 (26%), Positives = 79/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 28 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 85 LS-ISADIETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 141
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
++ KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 142 ELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 200
Score = 83 (34.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 351 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 405
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 406 QIQNAQYLLQNSVKQY 421
Score = 74 (31.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 35 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 87
Query: 457 NGEFEAVQEALFQITTRLRHH 477
+ + E + E L +I L +
Sbjct: 88 SADIETIGEILKKIIPTLEEY 108
Score = 70 (29.7 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG 76
+TE NGK ++ + + + + S++ + R+L VIGK G+ + + D
Sbjct: 12 NTETNGKRPAEDMEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYN 70
Query: 77 VTIRVEETVSGSDERLVVIEA 97
++ V ++ SG ER++ I A
Sbjct: 71 ASVSVPDS-SGP-ERILSISA 89
Score = 69 (29.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 173 ETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQI--DKLPTCALAS----DEV 225
E E A + + + + V LR+L+ S G ++GKGG IK + D + ++ + +
Sbjct: 25 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Query: 226 VQITGEVDTVRKALKLI 242
+ I+ +++T+ + LK I
Sbjct: 85 LSISADIETIGEILKKI 101
Score = 48 (22.0 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 26/109 (23%), Positives = 42/109 (38%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT--GPSHPLPDHSV-- 273
C ++D VV I G+ D V + +K+I L+ SP + P +P ++ ++
Sbjct: 158 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMFD 216
Query: 274 SSQGAPYATGHRDVADIHL--------PMPPSIPKFHESGVLDRPKPSP 314
+G P R PMPPS + + P P P
Sbjct: 217 DRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 265
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 96 (38.9 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 378 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 428
Score = 83 (34.3 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 418
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 419 QIQNAQYLLQNSVKQY 434
Score = 81 (33.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 31 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 88 LS-ISADIETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 144
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
+ KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 145 KFGGNTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 203
Score = 76 (31.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 8 SKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVIGKD 64
+++P + +TE NG E ++ A D E Q S++ + R+L VIGK
Sbjct: 3 TEQPEETFPNTETNG-EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 65 GEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
G+ + + D ++ V ++ SG ER++ I A
Sbjct: 62 GKNIKALRTDYNASVSVPDS-SGP-ERILSISA 92
Score = 74 (31.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 38 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 90
Query: 457 NGEFEAVQEALFQITTRLRHH 477
+ + E + E L +I L +
Sbjct: 91 SADIETIGEILKKIIPTLEEY 111
Score = 69 (29.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 173 ETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQI--DKLPTCALAS----DEV 225
E E A + + + + V LR+L+ S G ++GKGG IK + D + ++ + +
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 226 VQITGEVDTVRKALKLI 242
+ I+ +++T+ + LK I
Sbjct: 88 LSISADIETIGEILKKI 104
Score = 47 (21.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 29/110 (26%), Positives = 41/110 (37%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 161 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 219
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D PMPPS + + P P P
Sbjct: 220 DDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPP 269
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 106 (42.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 80/340 (23%), Positives = 140/340 (41%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQ--DAVLRVQTRIARAI----- 394
++QE+GC I++ G +R +++G P+ SA + D ++ + R A
Sbjct: 121 IQQESGCKIQIAPDSGGLPERSCMLTGT--PESVQSAKRLLDQIVE-KGRPAPGFHHGDG 177
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
P N Q +M + +++ G ++GKGG I ++++ +G + ++ +D P+ ++ +
Sbjct: 178 PGNAVQEIM----IPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDG-PQNTGADKPL- 230
Query: 455 LINGEFEAVQEALFQITTRLRHHF-FRDAFPSINRPLNPTFLDQVSPFPSF-----IGRR 508
I G+ VQ+A + +R FR+ + V P P F IGR
Sbjct: 231 RITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV-PIPRFAVGIVIGRN 289
Query: 509 ELSPPGMYSNFGP--SFHKFDAVXXXXXXXSFHPHD--DHSA-----FMHHIH--RPGMP 557
+ ++ G F D P D H+A + + PG P
Sbjct: 290 GEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGP 349
Query: 558 PHMPDMKPWGP-QGLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQ 616
P + G QG +G P G +F +I G+ G +K I Q
Sbjct: 350 G--PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTG--------LIIGKGGETIKSISQ 399
Query: 617 ISDAKITIT-DPKPGATETVII--ISGTPEQTHAAQSLIQ 653
S A+I + +P P A + + I GTP+Q A+ LI+
Sbjct: 400 QSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 439
Score = 75 (31.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVL-CPVSKIDGVIGKDGEM 67
KRP +D + +P+ K+ + ++ P +M P + +IG+ GE
Sbjct: 60 KRPLEDGD--QPDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQ 117
Query: 68 MSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENL 108
+S+I Q++G I++ G ER ++ + ++++ L
Sbjct: 118 ISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 158
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 106 (42.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 80/340 (23%), Positives = 140/340 (41%)
Query: 342 LKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQ--DAVLRVQTRIARAI----- 394
++QE+GC I++ G +R +++G P+ SA + D ++ + R A
Sbjct: 121 IQQESGCKIQIAPDSGGLPERSCMLTGT--PESVQSAKRLLDQIVE-KGRPAPGFHHGDG 177
Query: 395 PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVV 454
P N Q +M + +++ G ++GKGG I ++++ +G + ++ +D P+ ++ +
Sbjct: 178 PGNAVQEIM----IPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDG-PQNTGADKPL- 230
Query: 455 LINGEFEAVQEALFQITTRLRHHF-FRDAFPSINRPLNPTFLDQVSPFPSF-----IGRR 508
I G+ VQ+A + +R FR+ + V P P F IGR
Sbjct: 231 RITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV-PIPRFAVGIVIGRN 289
Query: 509 ELSPPGMYSNFGP--SFHKFDAVXXXXXXXSFHPHD--DHSA-----FMHHIH--RPGMP 557
+ ++ G F D P D H+A + + PG P
Sbjct: 290 GEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGP 349
Query: 558 PHMPDMKPWGP-QGLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQ 616
P + G QG +G P G +F +I G+ G +K I Q
Sbjct: 350 G--PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTG--------LIIGKGGETIKSISQ 399
Query: 617 ISDAKITIT-DPKPGATETVII--ISGTPEQTHAAQSLIQ 653
S A+I + +P P A + + I GTP+Q A+ LI+
Sbjct: 400 QSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 439
Score = 75 (31.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVL-CPVSKIDGVIGKDGEM 67
KRP +D + +P+ K+ + ++ P +M P + +IG+ GE
Sbjct: 60 KRPLEDGD--QPDAKKVPPQNDSFGAQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQ 117
Query: 68 MSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENL 108
+S+I Q++G I++ G ER ++ + ++++ L
Sbjct: 118 ISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 158
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 80 (33.2 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 20 PNGKEKSQKLAGDYSEN-QPSKSF-----PGGIMFRVLCPVSKIDGVIGKDGEMMSQISQ 73
P + +++L E +P+ F PG + ++ P SK VIGK GE + Q+ +
Sbjct: 153 PESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQE 212
Query: 74 DTGVT-IRVEETV--SGSDERLVVIEASDNKKETSENLEASIERSENNGRE 121
GV + +++ +G+D+ L I K + ++ + + R + RE
Sbjct: 213 RAGVKMVMIQDGPQNTGADKPLR-ITGDPYKVQQAKEMVLELIRDQGGFRE 262
Score = 73 (30.8 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 602 IIQGEDGACLKQIRQISDAKITIT-DPKPGATETV--IIISGTPEQTHAAQSLIQ 653
+I G+ G +K I Q S A+I + +P P A + I GTP+Q A+ LI+
Sbjct: 390 LIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIE 444
Score = 71 (30.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 155 KVQKALLLVFERMVEVEPETEVADQENTK-SSKFVLRLLVLSTQVGCLLGKGGCVIKQID 213
KVQ+A +V E + + EV ++ ++ + + + VG ++G+ G +IK+I
Sbjct: 242 KVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQ 301
Query: 214 K--------LPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTG 263
P D + QITG D + A ++I+ LL + + PG P G
Sbjct: 302 NDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIIT-DLLRSVQAGNPGGPGGPGG 358
Score = 64 (27.6 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 258 PGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHES-GVLDRPKPSP 314
P NP P P D + ++ A YA ++ A PP P ++ G D+P P+P
Sbjct: 520 PPNPPDPGKPGTDPNSAAWAAYYAHYYQQQAQPPPAAPPGGPATTQTNGQGDQPNPAP 577
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 407 LVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEA 466
+V + + G ++GKGG I + + SGA I + + P A N ++ I G + + A
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKMFTIRGTPQQIDYA 439
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 554 PGMP--PHMPDMKPWGPQGLMEVGGPMG 579
P +P PH P GP G G PMG
Sbjct: 456 PPVPHGPHGVVPGPHGPPGPPGPGAPMG 483
Score = 37 (18.1 bits), Expect = 0.00047, Sum P(4) = 0.00047
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 540 PHDDHSAFMHHIHRPGMP-PHMPDMKPWGP 568
PH H PG P P P M P+ P
Sbjct: 459 PHGPHGVVPGPHGPPGPPGPGAP-MGPYNP 487
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 96 (38.9 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 366 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 83 (34.3 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461
+ T++ + + G ++GKGG I ++R SGA I+I D+ P SE + ++ I G +
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGSE-DRIITITGTQD 406
Query: 462 AVQEALFQITTRLRHH 477
+Q A + + ++ +
Sbjct: 407 QIQNAQYLLQNSVKQY 422
Score = 80 (33.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 28 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 85 LS-ISADTETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 141
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
++ KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 142 ELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDP 200
Score = 72 (30.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 35 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 87
Query: 457 NGEFEAVQEALFQITTRLRHH 477
+ + E + E L +I L +
Sbjct: 88 SADTETIGEILKKIIPTLEEY 108
Score = 70 (29.7 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG 76
+TE NGK ++ + + + + S++ + R+L VIGK G+ + + D
Sbjct: 12 NTETNGKRPAEDMEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYN 70
Query: 77 VTIRVEETVSGSDERLVVIEA 97
++ V ++ SG ER++ I A
Sbjct: 71 ASVSVPDS-SGP-ERILSISA 89
Score = 67 (28.6 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 29/107 (27%), Positives = 47/107 (43%)
Query: 18 TEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGV 77
TE G E +K+ E Q K R+L S G+IG G + ++ ++T
Sbjct: 91 TETIG-EILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 78 TIRV-EETVSGSDERLVVIEAS-DNKKETSENLEASIERSENNGREE 122
TI++ +E S +R+V+I D E + + I S GR +
Sbjct: 150 TIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQ 196
Score = 50 (22.7 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 29/110 (26%), Positives = 42/110 (38%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 158 CPHSTDRVVLIGGKPDRVVECIKIIL-DLISESPIKGRAQPYDPNFYDETYDYGGFTMMF 216
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D + PMPPS + + P P P
Sbjct: 217 DDRRGRPVGFPMRGRGGFDRMPPNRGGRPMPPSRRDYDDMSPRRGPPPPP 266
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 111 (44.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 61/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R+++I+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 111 (44.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 61/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R+++I+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 111 (44.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 61/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R+++I+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 111 (44.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 61/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R+++I+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVIITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 111 (44.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 62/296 (20%), Positives = 126/296 (42%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVVQIT----GEV 232
+ ++TK++ V L++L + VG L+GK G +K++++ + + +T
Sbjct: 267 EAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERT 326
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHL 292
TV+ A++ + + E+ + S L H + A G + +
Sbjct: 327 ITVKGAIENCCRAEQEIMKKVREAYENDVAAMS--LQSHLIPGLNLA-AVGLFPASSSAV 383
Query: 293 PMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKV 352
P PPS + +PE ++ + + L + IK+
Sbjct: 384 PPPPS--SVTGAAPYGSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 441
Query: 353 MEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASN 411
+ ++ R++VI+GP P+ + A Q + + + E + T + V ++
Sbjct: 442 APPETPDSKVRMVVITGP--PEAQFKA-QGRIYG-KLKEENFFGPKEEVKLETHIRVPAS 497
Query: 412 QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAVQEA 466
G ++GKGG + E++ L+ A + ++ +DQ P EN++V++ I G F A Q A
Sbjct: 498 AAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/92 (22%), Positives = 41/92 (44%)
Query: 38 PSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIE 96
P+K I R+L P + +IGK+G + I++ T I V + G+ E+ + +
Sbjct: 188 PAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVH 247
Query: 97 ASDNKKETSENLEASIERSENNGREEASVADE 128
++ ++ + I E ++ ADE
Sbjct: 248 STPEGCSSACKMILEIMHKE---AKDTKTADE 276
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 96 (38.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 366 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 78 (32.5 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 42/202 (20%), Positives = 78/202 (38%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
E R + + E++ R+L + ++L+ + + V ++ SG E R
Sbjct: 26 EEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS-SGPE-R 83
Query: 363 LIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGS 422
++ IS I L + D RLL+ + G ++G G+
Sbjct: 84 ILSISADTETIGEILKKIIPTLEEYQHYKGSDFDCE-----LRLLIHQSLAGGIIGVKGA 138
Query: 423 IIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDA 482
I E+R+ + I++ + C + VVLI G+ + V E + +I L F
Sbjct: 139 KIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVVECI-KIILDL---IFESP 190
Query: 483 FPSINRPLNPTFLDQVSPFPSF 504
+P +P F D+ + F
Sbjct: 191 IKGRAQPYDPNFYDETYDYGGF 212
Score = 77 (32.2 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 28 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 85 LS-ISADTETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 141
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
++ KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 142 ELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLIFESPIKGRAQPYDP 200
Score = 70 (29.7 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG 76
+TE NGK ++ + + + + S++ + R+L VIGK G+ + + D
Sbjct: 12 NTETNGKRPAEDMEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYN 70
Query: 77 VTIRVEETVSGSDERLVVIEA 97
++ V ++ SG ER++ I A
Sbjct: 71 ASVSVPDS-SGP-ERILSISA 89
Score = 65 (27.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 18 TEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGV 77
TE G E +K+ E Q K R+L S G+IG G + ++ ++T
Sbjct: 91 TETIG-EILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 78 TIRV-EETVSGSDERLVVI 95
TI++ +E S +R+V+I
Sbjct: 150 TIKLFQECCPHSTDRVVLI 168
Score = 47 (21.6 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 29/110 (26%), Positives = 42/110 (38%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 158 CPHSTDRVVLIGGKPDRVVECIKIIL-DLIFESPIKGRAQPYDPNFYDETYDYGGFTMMF 216
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D + PMPPS + + P P P
Sbjct: 217 DDRRGRPVGFPMRGRGGFDRMPPNRGGRPMPPSRRDYDDMSPRRGPPPPP 266
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 96 (38.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 366 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 78 (32.5 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 42/202 (20%), Positives = 78/202 (38%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
E R + + E++ R+L + ++L+ + + V ++ SG E R
Sbjct: 26 EEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS-SGPE-R 83
Query: 363 LIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGS 422
++ IS I L + D RLL+ + G ++G G+
Sbjct: 84 ILSISADTETIGEILKKIIPTLEEYQHYKGSDFDCE-----LRLLIHQSLAGGIIGVKGA 138
Query: 423 IIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDA 482
I E+R+ + I++ + C + VVLI G+ + V E + +I L F
Sbjct: 139 KIKELRENTQTTIKLFQEC----CPHSTDRVVLIGGKPDRVVECI-KIILDL---IFESP 190
Query: 483 FPSINRPLNPTFLDQVSPFPSF 504
+P +P F D+ + F
Sbjct: 191 IKGRAQPYDPNFYDETYDYGGF 212
Score = 77 (32.2 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 47/180 (26%), Positives = 78/180 (43%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E I +S+N G A + N K N + D E+
Sbjct: 28 QAFKRSRNTDEMVELRILLQSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 84
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKF--VLRLLVLSTQVGCLLGKGGCVIK 210
S + + E + ++ P E + ++ K S F LRLL+ + G ++G G IK
Sbjct: 85 LS-ISADTETIGEILKKIIPTLE--EYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIK 141
Query: 211 QID-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
++ KL C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 142 ELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL-DLIFESPIKGRAQPYDP 200
Score = 70 (29.7 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 17 HTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTG 76
+TE NGK ++ + + + + S++ + R+L VIGK G+ + + D
Sbjct: 12 NTETNGKRPAEDMEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYN 70
Query: 77 VTIRVEETVSGSDERLVVIEA 97
++ V ++ SG ER++ I A
Sbjct: 71 ASVSVPDS-SGP-ERILSISA 89
Score = 65 (27.9 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 18 TEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGV 77
TE G E +K+ E Q K R+L S G+IG G + ++ ++T
Sbjct: 91 TETIG-EILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 78 TIRV-EETVSGSDERLVVI 95
TI++ +E S +R+V+I
Sbjct: 150 TIKLFQECCPHSTDRVVLI 168
Score = 47 (21.6 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 29/110 (26%), Positives = 42/110 (38%)
Query: 218 CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPT---------GPSHPL 268
C ++D VV I G+ D V + +K+I L+ SP + P +P G +
Sbjct: 158 CPHSTDRVVLIGGKPDRVVECIKIIL-DLIFESPIKGRAQPYDPNFYDETYDYGGFTMMF 216
Query: 269 PDHSVSSQGAPY-ATGHRDVADIHL---PMPPSIPKFHESGVLDRPKPSP 314
D G P G D + PMPPS + + P P P
Sbjct: 217 DDRRGRPVGFPMRGRGGFDRMPPNRGGRPMPPSRRDYDDMSPRRGPPPPP 266
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 96 (38.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 368 IIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNAQYLLQ 418
Score = 77 (32.2 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 5 LTPSKRPHDDDNHTEPNGKEKSQKLAGDYSENQP---SKSFPGGIMFRVLCPVSKIDGVI 61
+ P P +++ T N + ++ A D E +P S++ + R+L VI
Sbjct: 1 MDPENDPQEEE--TFSNKESNGKRSADDSEEEKPYKRSRNSDEMVELRILLQSKNAGAVI 58
Query: 62 GKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEA 97
GK G+ + + D T+ V ++ SG ER++ + A
Sbjct: 59 GKGGKNIKALRTDYNATVSVPDS-SGP-ERILSVSA 92
Score = 74 (31.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ +
Sbjct: 38 NSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATV------SVPD-SSGPERILSV 90
Query: 457 NGEFEAVQEALFQITTRL---RHH 477
+ + V E L +I L +HH
Sbjct: 91 SADIPTVAEILLKIIPTLEEYQHH 114
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 96 (38.9 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653
I G+ G +KQIR S A I I +P G+ + +I I+GT +Q AQ L+Q
Sbjct: 338 IIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 388
Score = 72 (30.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ I
Sbjct: 12 NTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSI 64
Query: 457 NGEFEAVQEALFQITTRL 474
+ + E + E L +I L
Sbjct: 65 SADIETIGEILKKIIPTL 82
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 173 ETEVADQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQI--DKLPTCALAS----DEV 225
E E A + + + + V LR+L+ S G ++GKGG IK + D + ++ + +
Sbjct: 2 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 61
Query: 226 VQITGEVDTVRKALKLI 242
+ I+ +++T+ + LK I
Sbjct: 62 LSISADIETIGEILKKI 78
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 446 CASENEEVVLINGEFEAVQEALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSF 504
C + VVLI G+ + V E + +I L +P +P F D+ + F
Sbjct: 121 CPHSTDRVVLIGGKPDRVVECI-KIILDL---ISESPIKGRAQPYDPNFYDETYDYGGF 175
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 114 (45.2 bits), Expect = 0.00095, P = 0.00095
Identities = 36/156 (23%), Positives = 70/156 (44%)
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
LT RLL H + + +++E+G I + E +R++ I+GP +
Sbjct: 44 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPTDAIFKA 101
Query: 377 SAPQDAVLRVQTRIARA--IPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
A +R++ I +N R++ +GC+LG+G ++ +GA
Sbjct: 102 FAMIAYKFEEVSRVSGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGLKGSTGAQ 161
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+++ G D +P + E V I+G +A+ + + QI
Sbjct: 162 VQVAG-DMLP---NSTERAVTISGTPDAIIQCVKQI 193
Score = 95 (38.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 41/172 (23%), Positives = 73/172 (42%)
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKG------- 205
T + KA ++ + EV + + + + R++ L VGC+LG+G
Sbjct: 95 TDAIFKAFAMIAYKFEEVSRVSGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGL 154
Query: 206 -GCVIKQI----DKLPTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGN 260
G Q+ D LP +++ V I+G D + + +K I +L++ P+ +IP
Sbjct: 155 KGSTGAQVQVAGDMLPN---STERAVTISGTPDAIIQCVKQICVVMLESPPKG-ATIPYR 210
Query: 261 PTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKP 312
P S P+ + + G Y T A +P P + K H+ + P P
Sbjct: 211 PKPASTPV----IFAGGQAY-TIQGQYA---IPHPDQLTKLHQLAMQQTPFP 254
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 33 YSENQPSKSFPGGI----MFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGS 88
+ SK GG+ R+L ++ +IGK GE + ++ +++G I + E
Sbjct: 27 FGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNC 84
Query: 89 DERLVVI 95
ER+V I
Sbjct: 85 PERIVTI 91
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 80 (33.2 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 20 PNGKEKSQKLAGDYSEN-QPSKSF-----PGGIMFRVLCPVSKIDGVIGKDGEMMSQISQ 73
P + +++L E +P+ F PG + ++ P SK VIGK GE + Q+ +
Sbjct: 151 PESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQE 210
Query: 74 DTGVT-IRVEETV--SGSDERLVVIEASDNKKETSENLEASIERSENNGRE 121
GV + +++ +G+D+ L I K + ++ + + R + RE
Sbjct: 211 RAGVKMVMIQDGPQNTGADKPLR-ITGDPYKVQQAKEMVLELIRDQGGFRE 260
Score = 78 (32.5 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 9 KRPHDDDNHTEPNGKEKSQKLAGDYSENQ--PSKSFPGGIMFRVL-CPVSKIDGVIGKDG 65
KRP +D + +P+ K+ + + D NQ P +M P + +IG+ G
Sbjct: 62 KRPLEDGD--QPDAKKVAPQ--NDSFGNQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGG 117
Query: 66 EMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENL 108
E +S+I Q++G I++ G ER ++ + ++++ L
Sbjct: 118 EQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 160
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 25/88 (28%), Positives = 37/88 (42%)
Query: 569 QGLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQISDAKITIT-DP 627
QG +G P G +F ++GE +K I Q S A+I + +P
Sbjct: 347 QGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGNVSLRGET---IKSISQQSGARIELQRNP 403
Query: 628 KPGATETV--IIISGTPEQTHAAQSLIQ 653
P A + I GTP+Q A+ LI+
Sbjct: 404 PPNADPNMKMFTIRGTPQQIDYARQLIE 431
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 198 VGCLLGKGGCVIKQIDK--------LPTCALASDEVVQITGEVDTVRKALKLISHQLLDN 249
VG ++G+ G +IK+I P D + QITG D + A ++I+ LL +
Sbjct: 268 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIIT-DLLRS 326
Query: 250 SPRDHESIPGNPTG 263
+ PG P G
Sbjct: 327 VQAGNPGGPGGPGG 340
Score = 64 (27.6 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 258 PGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHES-GVLDRPKPSP 314
P NP P P D + ++ A YA ++ A PP P ++ G D+P P+P
Sbjct: 507 PPNPPDPGKPGTDPNSAAWAAYYAHYYQQQAQPPPAAPPGGPATTQTNGQGDQPNPAP 564
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 97 (39.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 28/88 (31%), Positives = 39/88 (44%)
Query: 566 WGPQGLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQISDAKITIT 625
W P + GG + D II G+ G +KQIR S A I I
Sbjct: 337 WEP---FQSGGRGSYSDIGGPVITTQVTIPKDLAGSII-GKGGQRIKQIRHESGASIKID 392
Query: 626 DPKPGATETVIIISGTPEQTHAAQSLIQ 653
+P G+ + +I I+GT +Q AQ L+Q
Sbjct: 393 EPLEGSEDRIITITGTQDQIQNAQYLLQ 420
Score = 73 (30.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 42/178 (23%), Positives = 76/178 (42%)
Query: 96 EASDNKKETSENLEASIE-RSENNGREEASVADESDNKK--EDSVNEGSVLMDGLNSEKE 152
+A + T E +E + RS+N G A + N K N + D E+
Sbjct: 32 QAFKRSRNTDEMVELRVLLRSKNAG---AVIGKGGKNIKALRTDYNASVSVPDSSGPERI 88
Query: 153 TSKVQKALLLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI 212
S V + + E ++++ P E + LRLL+ + G ++G G IK++
Sbjct: 89 LS-VSADIDTIGEILLKIIPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKEL 147
Query: 213 D-------KL--PTCALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
KL C ++D VV + G+ + V + +K+I +L+ +P + P +P
Sbjct: 148 RENTQTTIKLFQECCPHSTDRVVLVGGKPERVVECIKVIL-ELIAEAPIKGRAQPYDP 204
Score = 72 (30.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 397 NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456
N ++ V R+L+ S G ++GKGG I +R A + +P +S E ++ +
Sbjct: 39 NTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASV------SVPD-SSGPERILSV 91
Query: 457 NGEFEAVQEALFQITTRLRHH 477
+ + + + E L +I L +
Sbjct: 92 SADIDTIGEILLKIIPTLEEY 112
Score = 67 (28.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 13 DDD---NHTEPNGKEKSQKLAGDYSENQPSKSFPGGIMFRVLCPVSKIDGVIGKDGEMMS 69
D+D ++T+ NGK ++ + + + + S++ + RVL VIGK G+ +
Sbjct: 9 DEDTTFSNTDTNGKRPAEDMDEEQAFKR-SRNTDEMVELRVLLRSKNAGAVIGKGGKNIK 67
Query: 70 QISQDTGVTIRVEETVSGSDERLVVIEA 97
+ D ++ V ++ SG ER++ + A
Sbjct: 68 ALRTDYNASVSVPDS-SGP-ERILSVSA 93
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 115 (45.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 72/310 (23%), Positives = 135/310 (43%)
Query: 175 EVADQE--NTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDK----------LPTCALA 221
E+ +E +TK ++ + L++L + VG L+GK G +K+I++ L L
Sbjct: 261 EIMQKEAIDTKITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLY 320
Query: 222 SDE-VVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHPLPDHSVSSQGA-P 279
+ E + + G +D KA + I ++ ++ D ++ S+ +P ++++ G P
Sbjct: 321 NPERTITVKGTLDACAKAEEEIMKKVRESYENDVAAMHLQ----SNLIPGLNLNALGLFP 376
Query: 280 -YATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXX 338
A+G + + P P + + G E T L
Sbjct: 377 GAASGGISPSVVSGPPPGAQAGYQSFGA------QMESETVHLFIPALAVGAIIGKQGQH 430
Query: 339 XRSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDN 397
+ L + G IK+ A + R+++ISGP P+ + A Q + + +
Sbjct: 431 IKQLSRFAGASIKIAPADGIDAKQRMVIISGP--PEAQFKA-QGRIFG-KLKEENFFGPK 486
Query: 398 REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-I 456
E + + V S G ++GKGG + E++ L+ A + ++ +DQ P EN++VV+ I
Sbjct: 487 EEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DENDQVVVKI 542
Query: 457 NGEFEAVQEA 466
G F A Q A
Sbjct: 543 TGHFYASQLA 552
Score = 57 (25.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS-GSDERLVVIEAS 98
+ R+L P + +IGK+G + I++ T I + + G+ E+ + + ++
Sbjct: 195 VPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHST 248
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 97 (39.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D QT LV ++ IGC++G+ GS I+E+R++SGA+I+I G + E V
Sbjct: 76 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GN----QAEGAGERHVT 130
Query: 456 INGEFEAVQEALFQITTRL 474
I G ++ A + IT L
Sbjct: 131 ITGSPVSIALAQYLITACL 149
Score = 64 (27.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 177 ADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDKLPTCALASDEVV 226
A+ N LRL++ ++Q G L+GK G IK+I ++ S V
Sbjct: 15 ANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQQLSSHAV 64
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 43/173 (24%), Positives = 81/173 (46%)
Query: 303 ESGVLDRPKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDR 362
+ G+ + P+ S LT R+L H + + +++++ I + E +R
Sbjct: 5 DGGLEEEPELSIT-LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPER 61
Query: 363 LIVISGPA----HPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLL 417
+ I+G H I+ D L A A N + +T RL++ ++Q G L+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGNVSRPPVTLRLVIPASQCGSLI 117
Query: 418 GKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
GK G+ I E+R+ +GA +++ G D +P + E V ++G +A+ + QI
Sbjct: 118 GKAGTKIKEIRETTGAQVQVAG-DLLP---NSTERAVTVSGVPDAIILCVRQI 166
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 340 RSLKQETGCDIKVMEAVS-GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNR 398
+ L + G IK+ A +R+++I+GP P+ + A Q + + +
Sbjct: 46 KQLARFAGASIKIAPAEGPDVSERMVIITGP--PEAQFKA-QGRIFG-KLKEENFFNPKE 101
Query: 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-IN 457
E + + V S+ G ++GKGG + E++ L+ A + I+ +DQ P ENEEV++ I
Sbjct: 102 EVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVIVRII 157
Query: 458 GEFEAVQ 464
G F A Q
Sbjct: 158 GHFFASQ 164
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 123 (48.4 bits), Expect = 0.00036, P = 0.00036
Identities = 72/303 (23%), Positives = 131/303 (43%)
Query: 178 DQENTKSSKFV-LRLLVLSTQVGCLLGKGGCVIKQIDKLP----TCALASDEVVQITGEV 232
+ + TKS++ + L++L ++ VG L+GK G +K+I++ T + D +
Sbjct: 238 EADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERT 297
Query: 233 DTVRKALKLISHQLLDNSPRDHESIPGNPTGPSHP---LPDHSVSSQGAPYATGHRDVAD 289
TV+ + + S+ ++ + E+ + + +P ++S+ G ++TG
Sbjct: 298 ITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLSALGI-FSTG------ 350
Query: 290 IHLPMPPSIPKFHESGVLDRPKPS---PEILTFRLLCHDERXXXXXXXXXXXXRSLKQET 346
L M PS + P PE L + + L +
Sbjct: 351 --LSMLPSSAGARGAAAAAPYHPFAQLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFA 408
Query: 347 GCDIKVM--EAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT 404
G IK+ E TE R+++I+GP P+ + A Q + + + E +
Sbjct: 409 GASIKIAPAEGPDATE-RMVIITGP--PEAQFKA-QGRIFG-KLKEENFFNPKEEVKLEA 463
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL-INGEFEAV 463
+ V S G ++GKGG + E++ L+ A + I+ +DQ P ENEEV++ I G F A
Sbjct: 464 HIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP---DENEEVIVKIIGHFFAS 519
Query: 464 QEA 466
Q A
Sbjct: 520 QTA 522
Score = 80 (33.2 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 603 IQGEDGACLKQIRQISDAKITITDPK-PGATETVIIISGTPEQTHAAQSLI 652
I G+ G +KQ+ + + A I I + P ATE ++II+G PE AQ I
Sbjct: 393 IIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 443
Score = 67 (28.6 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 28/129 (21%), Positives = 50/129 (38%)
Query: 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE 459
+ + ++L ++ +G L+GK G + ++ + +G I I + E + + G
Sbjct: 246 EEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLT--IYNPERTITVKGS 303
Query: 460 FEAVQEALFQITTRLRHHFFRDA---------FPSINRPLNPTFLDQVSPFPSFIGRREL 510
EA A +I +LR + D P +N F +S PS G R
Sbjct: 304 TEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGA 363
Query: 511 SPPGMYSNF 519
+ Y F
Sbjct: 364 AAAAPYHPF 372
Score = 62 (26.9 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 183 KSSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK 214
K F LR+LV + VG ++GK G IK + K
Sbjct: 163 KQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTK 194
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 89 (36.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRIL-GKDQIPKCASENEEVVLINGEFEAV 463
++L+ S G ++GKGG I +++K +GA I++ KD P E V LI G EA+
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLIQGTVEAL 68
Query: 464 QEALFQITTRLR 475
I ++R
Sbjct: 69 NAVHGFIAEKIR 80
Score = 72 (30.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGAT--ETVIIISGTPEQTHAAQSLI 652
+I G+ GA +K + + S A + ++ G E V+ +SG PEQ A LI
Sbjct: 144 LIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 196
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 93 (37.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVL 455
D+ E+ R LV++ G ++GKGGS I E + SGA I+ L ++Q + +++
Sbjct: 29 DSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQ-LSRNQ-EFFPGTTDRIIM 86
Query: 456 INGEFEAVQEALFQITTRL 474
I+G + V L I +L
Sbjct: 87 ISGSIKEVVNGLELILDKL 105
Score = 70 (29.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDP---KPGATETVIIISGTPEQTHAAQSLIQAFVMS 658
++ G G + +I Q++ A+I I+D G T+ + I+G A+++I+ V S
Sbjct: 268 LVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKVDS 327
Query: 659 ETETT 663
TE T
Sbjct: 328 ATERT 332
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 120 (47.3 bits), Expect = 0.00053, P = 0.00053
Identities = 37/162 (22%), Positives = 75/162 (46%)
Query: 310 PKPSPEILTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGP 369
P + +LT RLL + + +++E+G I + + +R++ I+G
Sbjct: 65 PSTTSLVLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGT 122
Query: 370 AHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMT-RLLVASNQIGCLLGKGGSIIAEMR 428
I + V +P++ + +T R++V + Q G L+GKGGS I ++R
Sbjct: 123 LGV---IGKAFNMVCNKFEEDMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIR 179
Query: 429 KLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470
+ +GA I++ + +P E V ++G +A+ + Q+
Sbjct: 180 EATGASIQV-ASEMLPH---STERAVTLSGTADAINLCMTQV 217
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 77 (32.2 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 48 FRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSEN 107
F+V P + +IG+ GE +S+I ++G I++ SG ER V+ + E ++
Sbjct: 82 FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKR 139
Query: 108 LEASI-ERSEN 117
L I +R N
Sbjct: 140 LLGQIVDRCRN 150
Score = 73 (30.8 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 185 SKFVLRLLVLSTQVGCLLGKGGCVIKQIDK-------------LPTCALASDEVVQITGE 231
S + LL+ +++VG ++GKGG IKQ+ + LPT A D+ ++ITG+
Sbjct: 161 SSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGD 217
Query: 232 VDTVRKALKLISHQLLDNSPRDHESIPGN 260
V++A +++ + + D + G+
Sbjct: 218 PFKVQQAREMVLEIIREKDQADFRGVRGD 246
Score = 60 (26.2 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 602 IIQGEDGACLKQIRQISDAKITITDPKPGATET---VIIISGTPEQTHAAQSLI 652
++ G+ G +K I Q S A + + P T+ V I G P+Q A+ LI
Sbjct: 368 LVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARHLI 421
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 101 (40.6 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 50/227 (22%), Positives = 96/227 (42%)
Query: 257 IPGNPTGPSHPLPDHSVSSQGAPYATGHRDVADIHLPMPPSIPKFHESGVLDRPKPSPEI 316
I G+ PS D Q P G + +PPS P G + P P
Sbjct: 36 IGGDGVPPSPVSNDFGYGGQKRPLEDGDQPETK---KVPPSDPFSAVMGGMGGP---PRS 89
Query: 317 LTFRLLCHDERXXXXXXXXXXXXRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRI 376
++ D L+QE+GC I++ G DR + ++G PD +
Sbjct: 90 VSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGS--PDAIM 147
Query: 377 SAPQDAVLRVQT-RIARAIPDNREQTVMTR-LLVASNQIGCLLGKGGSIIAEMRKLSGAY 434
+A + V+ R + A N + +++ +++ G ++GKGG I ++++ +G
Sbjct: 148 TAKRLLSEIVEKGRPSPAFHHNDGPGMSVHEMMIPASKAGLVIGKGGETIKQLQERAGVK 207
Query: 435 IRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRD 481
+ ++ +D P+ ++ + I+G+ VQ+A + +R FR+
Sbjct: 208 M-VMIQDG-PQNTGADKPL-RISGDPFKVQQAKDMVMDLIRDQGFRE 251
Score = 68 (29.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 602 IIQGEDGACLKQIRQISDAKITIT-DPKPGATETVII--ISGTPEQTHAAQSLIQ 653
+I G+ G +K I Q S A+I + +P P + + I + G+P+Q A+ L++
Sbjct: 388 LIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQLVE 442
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 95 (38.5 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 29/84 (34%), Positives = 39/84 (46%)
Query: 570 GLMEVGGPMGFPDFXXXXXXXXXXXXXXXXXXIIQGEDGACLKQIRQISDAKITITDPKP 629
G++ VGG + D II GE G +KQI S A I TD
Sbjct: 281 GVVGVGGRGSYSDLDRHIITTQITIPKDLTGSII-GEGGQRIKQICHESGASIK-TDELE 338
Query: 630 GATETVIIISGTPEQTHAAQSLIQ 653
G+ + +III+GT +Q AQ L+Q
Sbjct: 339 GSEDRIIIITGTQDQIQNAQYLLQ 362
Score = 67 (28.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 37/170 (21%), Positives = 70/170 (41%)
Query: 102 KETSENLEASIE-RSENNGREEASVADESDNKKEDSVNEGSVLMDGLNSEKETSKVQKAL 160
+ T E +E+ I +SEN G A + + D S+ + + + + +
Sbjct: 11 RNTDEMVESRILLQSENAG---AVIGKNIKALRTDY--SASISVPDSSGPEHILSIGADI 65
Query: 161 LLVFERMVEVEPETEVADQENTKSSKFVLRLLVLSTQVGCLLGKGGCVIKQI-DKLPT-- 217
+ E + ++ P E L LL+ + G ++G G +K++ + T
Sbjct: 66 KTIGEILRKIVPTLEECQHYRGSDFDCELGLLIQQSLAGGIIGVKGAKVKELRENTQTTV 125
Query: 218 ------CALASDEVVQITGEVDTVRKALKLISHQLLDNSPRDHESIPGNP 261
C ++D VV I G+ D V + +K+I L+ SP + P +P
Sbjct: 126 KRFQEWCPHSTDRVVLIGGKPDRVVECIKIIP-DLVSESPIKGRAQPYDP 174
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 77 (32.2 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 48 FRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSEN 107
F+V P + +IG+ GE +S+I ++G I++ SG ER V+ + E ++
Sbjct: 82 FKV--PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKR 139
Query: 108 LEASI-ERSEN 117
L I +R N
Sbjct: 140 LLGQIVDRCRN 150
Score = 71 (30.1 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 22/90 (24%), Positives = 47/90 (52%)
Query: 184 SSKFVLRLLVLSTQVGCLLGKGGCVIKQIDK-------------LPTCALASDEVVQITG 230
S+ + +L+ +++VG ++G+GG IKQ+ + LPT A D+ ++ITG
Sbjct: 160 SNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITG 216
Query: 231 EVDTVRKALKLISHQLLDNSPRDHESIPGN 260
+ V++A +++ + + D + G+
Sbjct: 217 DAFKVQQAREMVLEIIREKDQADFRGVRGD 246
Score = 60 (26.2 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 602 IIQGEDGACLKQIRQISDAKITIT-DPKPGATETV--IIISGTPEQTHAAQSLI 652
++ G+ G +K I Q S A + + +P P + + I G P+Q A+ LI
Sbjct: 368 LVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLI 421
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 663 626 0.00090 120 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 159
No. of states in DFA: 606 (64 KB)
Total size of DFA: 300 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.77u 0.10s 68.87t Elapsed: 00:00:03
Total cpu time: 68.82u 0.10s 68.92t Elapsed: 00:00:03
Start: Fri May 10 04:33:49 2013 End: Fri May 10 04:33:52 2013
WARNINGS ISSUED: 1