Query 045766
Match_columns 663
No_of_seqs 272 out of 2472
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvz_A KH type-splicing, FAR u 99.9 8.5E-24 2.9E-28 200.7 15.3 159 402-658 2-160 (164)
2 3krm_A Insulin-like growth fac 99.9 1.8E-23 6E-28 198.3 15.1 155 402-661 3-159 (163)
3 3krm_A Insulin-like growth fac 99.9 1.9E-23 6.4E-28 198.1 11.9 153 316-477 2-157 (163)
4 2jzx_A Poly(RC)-binding protei 99.9 2.5E-23 8.6E-28 196.6 11.8 157 399-658 2-159 (160)
5 2anr_A Neuro-oncological ventr 99.9 2.9E-23 1E-27 199.7 11.2 157 313-478 2-177 (178)
6 1j4w_A FUSE binding protein; s 99.9 8.5E-23 2.9E-27 195.7 13.4 170 401-656 2-174 (174)
7 3n89_A Defective in GERM LINE 99.9 2.3E-23 7.7E-28 217.7 10.0 223 313-658 26-261 (376)
8 2anr_A Neuro-oncological ventr 99.9 5.4E-23 1.8E-27 197.8 11.6 171 399-659 3-176 (178)
9 2jzx_A Poly(RC)-binding protei 99.9 5.9E-23 2E-27 194.1 10.4 153 315-476 3-159 (160)
10 1j4w_A FUSE binding protein; s 99.9 6.5E-23 2.2E-27 196.5 10.5 154 316-474 2-174 (174)
11 3n89_A Defective in GERM LINE 99.9 1.1E-21 3.8E-26 205.0 14.0 135 337-477 124-262 (376)
12 2jvz_A KH type-splicing, FAR u 99.9 1.9E-21 6.5E-26 184.5 11.5 150 317-477 2-161 (164)
13 2qnd_A FMR1 protein; KH domain 99.7 1.2E-17 4E-22 154.0 8.6 134 401-658 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 3.8E-17 1.3E-21 150.6 11.7 137 316-476 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 3.2E-15 1.1E-19 146.4 9.1 144 400-658 32-191 (219)
16 2p2r_A Poly(RC)-binding protei 99.5 4.4E-15 1.5E-19 121.4 5.7 72 588-659 4-75 (76)
17 1zzk_A Heterogeneous nuclear r 99.5 1.7E-14 5.8E-19 119.6 8.9 73 587-659 5-77 (82)
18 2e3u_A PH-DIM2P, hypothetical 99.5 6.8E-15 2.3E-19 144.1 6.4 141 318-476 35-191 (219)
19 1wvn_A Poly(RC)-binding protei 99.5 1.2E-14 4.2E-19 120.5 6.7 73 588-660 5-77 (82)
20 1j5k_A Heterogeneous nuclear r 99.5 1.5E-14 5.2E-19 121.8 5.2 74 586-659 11-84 (89)
21 1dtj_A RNA-binding neurooncolo 99.5 4E-14 1.4E-18 115.8 7.1 71 589-659 3-76 (76)
22 1x4n_A FAR upstream element bi 99.5 7.9E-14 2.7E-18 118.2 8.1 74 588-661 14-87 (92)
23 2axy_A Poly(RC)-binding protei 99.4 7.1E-14 2.4E-18 113.1 5.6 68 589-658 5-72 (73)
24 2hh3_A KH-type splicing regula 99.4 1.5E-13 5E-18 119.2 7.4 72 589-660 11-82 (106)
25 2opv_A KHSRP protein; KH domai 99.4 5.8E-13 2E-17 111.2 9.6 71 587-657 12-84 (85)
26 1ec6_A RNA-binding protein NOV 99.4 9.8E-14 3.3E-18 116.4 4.6 73 589-661 3-78 (87)
27 1tua_A Hypothetical protein AP 99.4 2.3E-13 8E-18 129.8 7.4 140 403-657 5-159 (191)
28 2hh2_A KH-type splicing regula 99.4 4.5E-13 1.5E-17 116.7 7.4 72 589-660 7-81 (107)
29 2dgr_A Ring finger and KH doma 99.4 1.9E-13 6.4E-18 112.9 4.2 69 588-659 9-77 (83)
30 1we8_A Tudor and KH domain con 99.4 7.9E-13 2.7E-17 114.7 8.2 73 588-660 14-88 (104)
31 1x4m_A FAR upstream element bi 99.4 5E-13 1.7E-17 113.7 6.7 73 587-659 13-87 (94)
32 2axy_A Poly(RC)-binding protei 99.4 5.2E-13 1.8E-17 107.9 6.1 70 400-476 3-72 (73)
33 1x4n_A FAR upstream element bi 99.4 3.4E-13 1.2E-17 114.2 5.0 72 43-114 12-83 (92)
34 1tua_A Hypothetical protein AP 99.3 1.6E-12 5.6E-17 123.9 9.0 141 319-476 6-160 (191)
35 1wvn_A Poly(RC)-binding protei 99.3 3.7E-13 1.3E-17 111.6 3.5 69 44-112 4-72 (82)
36 1dtj_A RNA-binding neurooncolo 99.3 1.7E-12 5.8E-17 106.0 7.4 73 402-476 3-75 (76)
37 2p2r_A Poly(RC)-binding protei 99.3 1.6E-12 5.6E-17 106.0 6.3 73 400-477 3-75 (76)
38 1zzk_A Heterogeneous nuclear r 99.3 4.3E-12 1.5E-16 105.1 8.0 73 400-477 5-77 (82)
39 1vig_A Vigilin; RNA-binding pr 99.3 1.5E-12 5.1E-17 104.6 5.0 66 589-656 5-70 (71)
40 2ctl_A Vigilin; K homology typ 99.3 3.8E-12 1.3E-16 108.6 7.5 71 589-659 17-88 (97)
41 2dgr_A Ring finger and KH doma 99.3 1.4E-12 4.6E-17 107.8 4.4 70 41-113 5-74 (83)
42 2opv_A KHSRP protein; KH domai 99.3 7.1E-12 2.4E-16 104.5 8.2 74 400-476 12-85 (85)
43 2ctm_A Vigilin; K homology typ 99.3 4.5E-12 1.5E-16 107.7 7.0 70 588-658 16-85 (95)
44 1x4m_A FAR upstream element bi 99.3 3.4E-12 1.1E-16 108.6 6.1 73 41-113 10-84 (94)
45 2cte_A Vigilin; K homology typ 99.3 4.1E-12 1.4E-16 108.0 5.6 71 588-660 16-86 (94)
46 1ec6_A RNA-binding protein NOV 99.3 4.7E-12 1.6E-16 106.1 5.8 75 402-478 3-77 (87)
47 2hh2_A KH-type splicing regula 99.2 7.2E-12 2.4E-16 109.1 6.8 74 402-477 7-80 (107)
48 1j5k_A Heterogeneous nuclear r 99.2 7.7E-12 2.6E-16 105.2 6.2 75 398-477 10-84 (89)
49 1we8_A Tudor and KH domain con 99.2 2.9E-11 9.9E-16 104.8 8.1 77 399-478 12-88 (104)
50 2ctk_A Vigilin; K homology typ 99.2 1.3E-11 4.6E-16 106.6 5.1 68 589-658 17-84 (104)
51 2hh3_A KH-type splicing regula 99.2 2.4E-11 8.2E-16 105.3 6.6 72 401-477 10-81 (106)
52 2ctm_A Vigilin; K homology typ 99.2 3.4E-11 1.2E-15 102.3 6.8 75 398-478 13-87 (95)
53 2ctl_A Vigilin; K homology typ 99.2 4E-11 1.4E-15 102.3 7.2 74 400-477 15-88 (97)
54 1vig_A Vigilin; RNA-binding pr 99.1 3.1E-11 1E-15 96.9 5.2 67 401-474 4-70 (71)
55 2cte_A Vigilin; K homology typ 99.1 3.5E-11 1.2E-15 102.2 5.5 74 398-478 13-86 (94)
56 2ctf_A Vigilin; K homology typ 99.1 7.7E-11 2.6E-15 101.3 7.1 66 589-659 27-93 (102)
57 2ctj_A Vigilin; K homology typ 99.1 7.1E-11 2.4E-15 100.1 5.5 71 588-660 16-87 (95)
58 2ctf_A Vigilin; K homology typ 99.1 1.4E-11 4.8E-16 105.9 0.8 89 366-478 5-94 (102)
59 2ctk_A Vigilin; K homology typ 99.0 1.7E-10 5.9E-15 99.6 5.9 70 401-477 16-85 (104)
60 2ctj_A Vigilin; K homology typ 98.9 6.5E-10 2.2E-14 94.2 5.6 73 398-477 13-86 (95)
61 2cpq_A FragIle X mental retard 98.7 5E-09 1.7E-13 87.0 3.8 62 589-655 15-78 (91)
62 2cpq_A FragIle X mental retard 98.6 3E-08 1E-12 82.4 4.3 66 399-474 12-79 (91)
63 1k1g_A SF1-BO isoform; splicin 98.3 8.7E-07 3E-11 79.3 7.3 70 589-658 7-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.3 2.1E-06 7.4E-11 75.2 8.1 70 590-659 13-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.2 2.2E-06 7.6E-11 76.7 8.2 77 400-476 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.1 4.6E-06 1.6E-10 73.1 7.8 76 401-476 11-99 (119)
67 3u1k_A Polyribonucleotide nucl 97.8 1.1E-05 3.7E-10 90.7 5.5 87 377-474 537-629 (630)
68 2bl5_A MGC83862 protein, quaki 97.8 9.7E-06 3.3E-10 72.9 2.8 75 402-476 2-101 (140)
69 2bl5_A MGC83862 protein, quaki 97.7 2.4E-05 8.2E-10 70.3 4.8 68 591-658 4-101 (140)
70 3v69_A Protein filia; RNA-bind 97.7 4.8E-05 1.6E-09 66.9 6.4 68 589-657 56-123 (140)
71 3u1k_A Polyribonucleotide nucl 97.4 5.9E-05 2E-09 84.7 2.6 62 589-656 567-629 (630)
72 3v69_A Protein filia; RNA-bind 97.2 0.0004 1.4E-08 61.0 6.0 69 402-476 56-124 (140)
73 4aid_A Polyribonucleotide nucl 97.2 0.00011 3.8E-09 83.5 3.1 91 376-477 539-635 (726)
74 2cxc_A NUSA; transcription ter 96.9 0.00043 1.5E-08 62.6 3.0 98 317-437 36-138 (144)
75 2cxc_A NUSA; transcription ter 96.5 0.00074 2.5E-08 61.0 1.4 40 45-84 35-74 (144)
76 4aid_A Polyribonucleotide nucl 96.4 0.00066 2.2E-08 77.2 0.9 62 590-657 571-633 (726)
77 3cdi_A Polynucleotide phosphor 94.8 0.0078 2.7E-07 68.7 1.5 89 377-476 530-624 (723)
78 2asb_A Transcription elongatio 94.0 0.049 1.7E-06 53.5 5.0 93 326-441 126-223 (251)
79 1k0r_A NUSA; two component arr 93.9 0.054 1.8E-06 56.3 5.4 93 326-441 249-346 (366)
80 1e3p_A Guanosine pentaphosphat 92.8 0.0083 2.8E-07 68.8 -3.1 87 377-474 569-660 (757)
81 3cdi_A Polynucleotide phosphor 91.6 0.034 1.2E-06 63.5 0.0 63 589-657 560-623 (723)
82 1k0r_A NUSA; two component arr 91.5 0.18 6.1E-06 52.4 5.2 39 589-627 307-345 (366)
83 2asb_A Transcription elongatio 91.2 0.064 2.2E-06 52.7 1.5 39 589-627 184-222 (251)
84 1hh2_P NUSA, N utilization sub 91.0 0.21 7.1E-06 51.7 5.2 92 326-440 245-341 (344)
85 1e3p_A Guanosine pentaphosphat 84.1 0.19 6.4E-06 57.7 -0.3 46 48-99 600-645 (757)
86 1hh2_P NUSA, N utilization sub 67.1 2.7 9.4E-05 43.3 2.8 37 589-625 303-339 (344)
87 1wh9_A 40S ribosomal protein S 57.2 1.9 6.6E-05 35.5 -0.4 28 47-74 36-63 (92)
88 2pt7_G HP1451, hypothetical pr 52.9 3.5 0.00012 37.3 0.5 29 47-75 34-62 (152)
89 2pt7_G HP1451, hypothetical pr 47.6 7.2 0.00025 35.2 1.7 29 318-346 34-62 (152)
90 1wh9_A 40S ribosomal protein S 39.7 9.6 0.00033 31.2 1.2 28 318-345 36-63 (92)
91 3ul0_C Nuclear CAP-binding pro 39.0 30 0.001 20.3 2.8 21 8-30 4-24 (26)
92 2ba0_A Archeal exosome RNA bin 39.0 34 0.0012 33.0 5.2 57 405-472 139-195 (229)
93 2ba0_A Archeal exosome RNA bin 33.5 46 0.0016 32.0 5.1 57 591-653 138-194 (229)
94 3u5c_D RP13, YS3, 40S ribosoma 28.4 13 0.00044 36.0 0.2 29 47-75 45-73 (240)
95 2z0s_A Probable exosome comple 25.3 90 0.0031 30.0 5.7 58 591-654 150-208 (235)
96 3j20_C 30S ribosomal protein S 25.1 13 0.00044 35.4 -0.5 28 47-74 41-68 (210)
97 2xzm_C KH domain containing pr 24.0 17 0.00057 35.4 0.1 30 46-75 47-76 (243)
98 2z0s_A Probable exosome comple 23.6 96 0.0033 29.8 5.5 59 404-473 150-209 (235)
99 3iz6_B 40S ribosomal protein S 23.0 13 0.00046 35.7 -0.8 29 47-75 45-73 (227)
100 3ukw_C Bimax1 peptide; arm rep 22.0 47 0.0016 19.7 1.7 13 2-14 2-14 (28)
101 3gku_A Probable RNA-binding pr 20.4 18 0.00062 34.8 -0.5 26 47-72 93-118 (225)
No 1
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=200.74 Aligned_cols=159 Identities=21% Similarity=0.371 Sum_probs=128.2
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhccccC
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRD 481 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 481 (663)
++.+|+||.+++|.|||++|++|++|+++|||+|++.++... ....++.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS---SSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999999999443222 23568899999999999999999999987632100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 045766 482 AFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMPPHMP 561 (663)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 561 (663)
|. +. .
T Consensus 79 ------------~~--------------------------------------------~~---~---------------- 83 (164)
T 2jvz_A 79 ------------FG--------------------------------------------DR---N---------------- 83 (164)
T ss_dssp ------------CS--------------------------------------------SC---S----------------
T ss_pred ------------CC--------------------------------------------Cc---c----------------
Confidence 00 00 0
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcC
Q 045766 562 DMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGT 641 (663)
Q Consensus 562 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt 641 (663)
.|+.. ...+++|.||.+++|+||||+|++|++|++.|||+|+|++..+...++.|+|+|+
T Consensus 84 ---~~~~~-----------------~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~ 143 (164)
T 2jvz_A 84 ---EYGSR-----------------IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP 143 (164)
T ss_dssp ---SCTTS-----------------CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC
T ss_pred ---ccCCC-----------------CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC
Confidence 00000 0123568999999999999999999999999999999998766566899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 045766 642 PEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 642 ~e~v~~A~~lI~~~v~~ 658 (663)
+++|+.|+.+|+++|..
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998865
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=198.30 Aligned_cols=155 Identities=21% Similarity=0.389 Sum_probs=128.3
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhccccC
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFRD 481 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 481 (663)
.+++|+||.+++|.|||++|++|++|+++|||+|+|. ++..| ...++.|+|+|+++++.+|+.+|.+++.+.....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~-~~~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIA-PPETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-CCSST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEc-CCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 5889999999999999999999999999999999994 33233 3678999999999999999999999988732100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 045766 482 AFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMPPHMP 561 (663)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 561 (663)
| .
T Consensus 79 ----------~------------------------------------------------------------~-------- 80 (163)
T 3krm_A 79 ----------P------------------------------------------------------------K-------- 80 (163)
T ss_dssp ----------S------------------------------------------------------------S--------
T ss_pred ----------c------------------------------------------------------------c--------
Confidence 0 0
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCC-CCCc-ceEEEEE
Q 045766 562 DMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPK-PGAT-ETVIIIS 639 (663)
Q Consensus 562 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~-~~~~-~r~v~Is 639 (663)
.....+.+|.||.+++|+|||++|++|++|++.|||+|+|++.. +... .+.|+|+
T Consensus 81 -----------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~ 137 (163)
T 3krm_A 81 -----------------------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKII 137 (163)
T ss_dssp -----------------------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEE
T ss_pred -----------------------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEE
Confidence 00114568999999999999999999999999999999998643 2233 3489999
Q ss_pred cCHHHHHHHHHHHHHHHhcccc
Q 045766 640 GTPEQTHAAQSLIQAFVMSETE 661 (663)
Q Consensus 640 Gt~e~v~~A~~lI~~~v~~~~~ 661 (663)
|++++|++|+.+|+++|..-.+
T Consensus 138 G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 138 GHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTC
T ss_pred eCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986543
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=198.12 Aligned_cols=153 Identities=25% Similarity=0.405 Sum_probs=124.6
Q ss_pred ceEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEecc-CCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcC
Q 045766 316 ILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEA-VSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394 (663)
Q Consensus 316 ~~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~-~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~ 394 (663)
+.+++|+||.+++|.|||++|++|++|+++|||+|+|++. .+++.+|.|+|+|++ +++. .|...+.+.+.+..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~---e~v~---~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP---EAQF---KAQGRIYGKLKEEN 75 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH---HHHH---HHHHHHHHHHHHTT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH---HHHH---HHHHHHHHHHhccc
Confidence 3489999999999999999999999999999999999975 467899999999987 4444 44444444444321
Q ss_pred --CCCCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHH
Q 045766 395 --PDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITT 472 (663)
Q Consensus 395 --~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 472 (663)
........+.+|.||.+++|+|||++|++|++|++.|||+|.| +++..|.. ..++.|+|+|++++|++|+.+|.+
T Consensus 76 ~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i-~~~~~~~~--~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 76 FFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV-PRDQTPDE--NDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEC-CTTCCCCT--TSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEE-CCCCCCCC--CCceEEEEEeCHHHHHHHHHHHHH
Confidence 1123345788999999999999999999999999999999999 55544442 334589999999999999999999
Q ss_pred HHhhc
Q 045766 473 RLRHH 477 (663)
Q Consensus 473 ~l~~~ 477 (663)
++++.
T Consensus 153 ~i~~~ 157 (163)
T 3krm_A 153 ILAQV 157 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=196.63 Aligned_cols=157 Identities=25% Similarity=0.410 Sum_probs=129.6
Q ss_pred CcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcc
Q 045766 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHF 478 (663)
Q Consensus 399 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 478 (663)
+.+.+.+|+||.+++|.|||++|++|++|+++|||+|+|.+. ...++.|+|+|++++|.+|+.+|.+++.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 356899999999999999999999999999999999999432 1457999999999999999999999988743
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 045766 479 FRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMPP 558 (663)
Q Consensus 479 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 558 (663)
..... . +..
T Consensus 75 ~~~~~-------------------------------------~------------------------~~~---------- 83 (160)
T 2jzx_A 75 SSSMT-------------------------------------N------------------------STA---------- 83 (160)
T ss_dssp TSCCC-------------------------------------S------------------------SSC----------
T ss_pred cccCC-------------------------------------C------------------------Ccc----------
Confidence 11000 0 000
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCC-CCCCcceEEE
Q 045766 559 HMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDP-KPGATETVII 637 (663)
Q Consensus 559 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~-~~~~~~r~v~ 637 (663)
...+...+++.||.+++|+||||+|++|++|++.|||+|+|++. .++..++.|+
T Consensus 84 -------------------------~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~ 138 (160)
T 2jzx_A 84 -------------------------ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAIT 138 (160)
T ss_dssp -------------------------CCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEE
T ss_pred -------------------------CCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEE
Confidence 00112578899999999999999999999999999999999862 3456789999
Q ss_pred EEcCHHHHHHHHHHHHHHHhc
Q 045766 638 ISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 638 IsGt~e~v~~A~~lI~~~v~~ 658 (663)
|+|++++|++|+.+|.+++.+
T Consensus 139 I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 139 IAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=2.9e-23 Score=199.69 Aligned_cols=157 Identities=25% Similarity=0.445 Sum_probs=125.1
Q ss_pred CCcceEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEecc---CCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 045766 313 SPEILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEA---VSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTR 389 (663)
Q Consensus 313 ~~~~~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~---~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~ 389 (663)
..++++++|+||.+++|.|||++|++|++|+++|||+|+|++. .+++.+|.|+|+|+. +++..|+..| .+.
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~---~~v~~A~~~I---~~~ 75 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI---EALNAVHGFI---AEK 75 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH---HHHHHHHHHH---HHH
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH---HHHHHHHHHH---HHH
Confidence 3467899999999999999999999999999999999999853 356889999999987 4444444444 333
Q ss_pred HhhcCCC----------------CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcE
Q 045766 390 IARAIPD----------------NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEV 453 (663)
Q Consensus 390 i~~~~~~----------------~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~ 453 (663)
+.+.... ..+...+.+|.||.+++|+|||++|++|++|+++|||+|+|.+... +....++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~~~~~~~ 152 (178)
T 2anr_A 76 IREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GINLQNRV 152 (178)
T ss_dssp HTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEE
T ss_pred HhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CCCCCceE
Confidence 3322110 1123478999999999999999999999999999999999954332 22357899
Q ss_pred EEEEecHHHHHHHHHHHHHHHhhcc
Q 045766 454 VLINGEFEAVQEALFQITTRLRHHF 478 (663)
Q Consensus 454 v~I~G~~~~v~~A~~~I~~~l~~~~ 478 (663)
|+|+|++++|++|+.+|.+++.+++
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998753
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=8.5e-23 Score=195.67 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=126.1
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcccc
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFR 480 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~~ 480 (663)
..+.+|.||.+++|.|||++|++|++|+++|||+|+|.+.+ + ...++.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 46889999999999999999999999999999999994322 2 256899999999999999999999999874311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 045766 481 DAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMPPHM 560 (663)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 560 (663)
. . .++ . | + + +.+ + .. .
T Consensus 77 ~-~-------~~~----~-p-----~-------~------~~~------~-------~~----~---------------- 92 (174)
T 1j4w_A 77 N-P-------GGP----G-P-----G-------G------RGR------G-------RG----Q---------------- 92 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-C-------CCC----C-C-----C-------C------CCC------C-------CC----C----------------
Confidence 0 0 000 0 0 0 0 000 0 00 0
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCC---CCCcceEEE
Q 045766 561 PDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPK---PGATETVII 637 (663)
Q Consensus 561 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~---~~~~~r~v~ 637 (663)
..|.. +. ......+++.||.+++|+||||+|++|++|++.|||+|+|++.. .+..++.|+
T Consensus 93 ---~~~~~------~~--------~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~ 155 (174)
T 1j4w_A 93 ---GNWNM------GP--------PGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFT 155 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEE
T ss_pred ---Ccccc------CC--------CCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEE
Confidence 00000 00 00125678999999999999999999999999999999999743 235679999
Q ss_pred EEcCHHHHHHHHHHHHHHH
Q 045766 638 ISGTPEQTHAAQSLIQAFV 656 (663)
Q Consensus 638 IsGt~e~v~~A~~lI~~~v 656 (663)
|+|++++|++|++||+++|
T Consensus 156 I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 156 IRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EECCHHHHHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHHHHHhC
Confidence 9999999999999999875
No 7
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.88 E-value=2.3e-23 Score=217.72 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=160.7
Q ss_pred CCcceEEEEEeeccccceeeccCc--hhHHhHHhHhCCeEEEeccC-----CCCCceEEEEeCCCCCCCCCChHHHHHHH
Q 045766 313 SPEILTFRLLCHDERVGGVIGKGG--AIIRSLKQETGCDIKVMEAV-----SGTEDRLIVISGPAHPDDRISAPQDAVLR 385 (663)
Q Consensus 313 ~~~~~~~~v~vp~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~-----~~~~er~v~I~G~~~~~~~v~~a~~ai~~ 385 (663)
..+.+++++.||..+|+.|||++| ++|++|+++|||+|+||+.. +......|+|+|.. ++|++|+++|..
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~---enVE~AR~~I~~ 102 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYF---GDVDRARMLMRR 102 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEH---HHHHHHHHHHHH
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCH---HHHHHHHHHHHh
Confidence 358999999999999999999999 99999999999999999754 11334689999998 666666665543
Q ss_pred HHHHHhhcCCCCCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHH
Q 045766 386 VQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQE 465 (663)
Q Consensus 386 i~~~i~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~ 465 (663)
+ .+.++.+.+|...+.. ...+..|.+ ++..+++|.|++..+. .......|+|+|...+++.
T Consensus 103 l-------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~---~~~~sd~V~IrG~~~nv~~ 163 (376)
T 3n89_A 103 N-------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK---NGIVTTYLRITAREKNQHE 163 (376)
T ss_dssp S-------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEEEEEEEGGGHHH
T ss_pred c-------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc---cCCCCCEEEEEcChhhHHH
Confidence 1 2467777777643322 112334544 5578999999544211 1123567999999987777
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 045766 466 ALFQITTRLRHHFFRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHS 545 (663)
Q Consensus 466 A~~~I~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (663)
|++.+..++.........
T Consensus 164 akeA~~~Ll~~l~~~e~~-------------------------------------------------------------- 181 (376)
T 3n89_A 164 LIEAAKRLNEILFRESPA-------------------------------------------------------------- 181 (376)
T ss_dssp HHHHHHHHHHHHCC--CC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcc--------------------------------------------------------------
Confidence 776666666542111000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCCh--hHHHHHHHcCCEEE
Q 045766 546 AFMHHIHRPGMPPHMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGA--CLKQIRQISDAKIT 623 (663)
Q Consensus 546 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~--~I~~I~~~sGa~I~ 623 (663)
.....++++.|+..+|..|||++|+ .|++|++.|||+|.
T Consensus 182 ---------------------------------------~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~ 222 (376)
T 3n89_A 182 ---------------------------------------PENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIIS 222 (376)
T ss_dssp ---------------------------------------CSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEE
T ss_pred ---------------------------------------cccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEE
Confidence 0012578899999999999999994 56999999999999
Q ss_pred EeCCCC----CCcceEEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 624 ITDPKP----GATETVIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 624 i~~~~~----~~~~r~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
||+... ......|+|+|++++|.+|+.+|+++|+-
T Consensus 223 FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv 261 (376)
T 3n89_A 223 YPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLPI 261 (376)
T ss_dssp CC---------CCEEEEEEESCHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCCE
Confidence 986532 12357999999999999999999998864
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=5.4e-23 Score=197.84 Aligned_cols=171 Identities=27% Similarity=0.409 Sum_probs=131.0
Q ss_pred CcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCC-CCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQ-IPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 399 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~-~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
...++++|.||.+++|.|||++|++|++|+++|||+|+|.+..+ .|. ..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---TTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---SSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---CCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999999999954322 232 56899999999999999999999998764
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 045766 478 FFRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMP 557 (663)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 557 (663)
...... +. + ..+. +
T Consensus 80 ~~~~~~-------~~--------------------~-------------------------------~~~~--------~ 93 (178)
T 2anr_A 80 PQNVAK-------TE--------------------P-------------------------------VSIL--------Q 93 (178)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCcccc-------CC--------------------c-------------------------------cccc--------C
Confidence 221100 00 0 0000 0
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCC--CCCcceE
Q 045766 558 PHMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPK--PGATETV 635 (663)
Q Consensus 558 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~--~~~~~r~ 635 (663)
+ .+. .......+++|.||.+++|+||||+|++|++|++.|||+|+|++.. ....++.
T Consensus 94 ~------~~~---------------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~ 152 (178)
T 2anr_A 94 P------QTT---------------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRV 152 (178)
T ss_dssp ---------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEE
T ss_pred C------ccC---------------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceE
Confidence 0 000 0001135788999999999999999999999999999999998753 2346799
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 636 IIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 636 v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
|+|+|++++|++|+.+|+++|...
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999764
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=194.09 Aligned_cols=153 Identities=29% Similarity=0.537 Sum_probs=124.4
Q ss_pred cceEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh-hc
Q 045766 315 EILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIA-RA 393 (663)
Q Consensus 315 ~~~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~-~~ 393 (663)
..++++|+||.+++|.|||++|++|++|+++|||+|+|++. ++.+|.|+|+|+. +++..|...|..++..-. ..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~---~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT---NAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH---HHHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH---HHHHHHHHHHHHHHHhhcccc
Confidence 46789999999999999999999999999999999999875 5678999999986 455555554443333211 11
Q ss_pred CCC---CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHH
Q 045766 394 IPD---NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQI 470 (663)
Q Consensus 394 ~~~---~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I 470 (663)
... ......+.+|.||.+++|+|||++|++|++|+++|||+|+| +++..|. +.++.|+|+|++++|++|+.+|
T Consensus 78 ~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i-~~~~~~~---~~~~~v~I~G~~~~v~~A~~~I 153 (160)
T 2jzx_A 78 MTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGIPQSIIECVKQI 153 (160)
T ss_dssp CCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECC-CCCCSTT---CCEEEEEEEECHHHHHHHHHHH
T ss_pred CCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEE-CCCCCCC---CCceEEEEEcCHHHHHHHHHHH
Confidence 110 12345899999999999999999999999999999999999 4444443 5789999999999999999999
Q ss_pred HHHHhh
Q 045766 471 TTRLRH 476 (663)
Q Consensus 471 ~~~l~~ 476 (663)
.+++.+
T Consensus 154 ~~~i~e 159 (160)
T 2jzx_A 154 CVVMLE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=6.5e-23 Score=196.51 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=123.9
Q ss_pred ceEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 045766 316 ILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIP 395 (663)
Q Consensus 316 ~~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~ 395 (663)
..+++|+||.+++|.|||++|++|++|+++|||+|+|.+..++..+|.|+|+|+. +++..|++.|..++........
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~---~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP---DRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH---HHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH---HHHHHHHHHHHHHHHhcccCCC
Confidence 3588999999999999999999999999999999999876667889999999997 6666676666666554421100
Q ss_pred -------------------CCCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEE
Q 045766 396 -------------------DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLI 456 (663)
Q Consensus 396 -------------------~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I 456 (663)
.......+.+|.||.+++|+|||++|++|++|+++|||+|+|.+ +. +.+..+.++.|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~-~~-~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQR-NP-PPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEEC-CC-TTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECC-CC-CCCCCCCceEEEE
Confidence 00112468899999999999999999999999999999999943 32 2233467899999
Q ss_pred EecHHHHHHHHHHHHHHH
Q 045766 457 NGEFEAVQEALFQITTRL 474 (663)
Q Consensus 457 ~G~~~~v~~A~~~I~~~l 474 (663)
+|++++|++|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999998874
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.86 E-value=1.1e-21 Score=204.99 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=99.5
Q ss_pred hhHHhHHhHhCCeEEEeccCC--CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCCCCCCcceEEEEEeccccee
Q 045766 337 AIIRSLKQETGCDIKVMEAVS--GTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIG 414 (663)
Q Consensus 337 ~~Ik~I~~~tga~I~i~~~~~--~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~~~~~~~~~~~l~Vp~~~vg 414 (663)
..|.+ ++.++++|.|+.... +.....|+|+|+. .++..|++|+..+++.+.+. .......++..|.|+..+|.
T Consensus 124 ~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~---~nv~~akeA~~~Ll~~l~~~-e~~~~~~~s~~v~V~~~~H~ 198 (376)
T 3n89_A 124 AHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITARE---KNQHELIEAAKRLNEILFRE-SPAPENNFTLHFTLSTYYVD 198 (376)
T ss_dssp HHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEG---GGHHHHHHHHHHHHHHHCC---CCCSSCEEEEEEEEGGGHH
T ss_pred hhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcCh---hhHHHHHHHHHHHHHHHHhh-hcccccceEEEEEeCHHHHH
Confidence 34444 567899999975421 1124579999998 78888999998888887653 12234568999999999999
Q ss_pred EEEcCCc--hHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 415 CLLGKGG--SIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 415 ~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
+|||++| ..|++|+++|||+|.|+..++ +.........|+|+|+.++|.+|+++|.++|-=.
T Consensus 199 ~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv~ 262 (376)
T 3n89_A 199 QVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLLPIS 262 (376)
T ss_dssp HHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSEEE
T ss_pred HhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhCCEE
Confidence 9999999 667999999999999943321 1111124568999999999999999999988653
No 12
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=184.50 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=119.4
Q ss_pred eEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccC--CCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcC
Q 045766 317 LTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAV--SGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI 394 (663)
Q Consensus 317 ~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~--~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~ 394 (663)
++++|+||.+++|.|||++|++|++|+++|||+|+|.+.. ++..+|.|+|+|++ +++. .|+..+.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~---~~v~---~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP---YKVQ---QACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH---HHHH---HHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH---HHHH---HHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999997532 45678999999976 4444 44444444444322
Q ss_pred CC--------CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHH
Q 045766 395 PD--------NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEA 466 (663)
Q Consensus 395 ~~--------~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A 466 (663)
.. ......+.+|.||.+++|+|||++|++|++|+++|||+|.|.+.+ + ...++.|+|+|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHHH
T ss_pred CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHHH
Confidence 10 011124688999999999999999999999999999999994332 1 2457999999999999999
Q ss_pred HHHHHHHHhhc
Q 045766 467 LFQITTRLRHH 477 (663)
Q Consensus 467 ~~~I~~~l~~~ 477 (663)
+.+|.+++++.
T Consensus 151 ~~~I~~~i~~~ 161 (164)
T 2jvz_A 151 ARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=1.2e-17 Score=153.99 Aligned_cols=134 Identities=20% Similarity=0.309 Sum_probs=104.5
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcccc
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHFFR 480 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~~ 480 (663)
.++.+|.||.+.+|.+||++|++|+.|++++|+.+.. .++ ..+..+...++++.|.+|+.++ .-
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~--~~~------~~~~~i~~~~~p~~v~~~~~~l----~~---- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAID--LDE------DTCTFHIYGEDQDAVKKARSFL----EF---- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEE--EET------TTTEEEEEESSHHHHHHHHHHH----CE----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEec--cCC------CchheeeccCCHHHHHHHHHhh----hc----
Confidence 4688999999999999999999999999999944333 211 2234444445799998886432 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 045766 481 DAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMPPHM 560 (663)
Q Consensus 481 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 560 (663)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEecCCCcCeeecCCChhHHHHHHHcCC-EEEEeCCCCC---Ccc--e
Q 045766 561 PDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDA-KITITDPKPG---ATE--T 634 (663)
Q Consensus 561 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa-~I~i~~~~~~---~~~--r 634 (663)
....+.||.+.+|.+|||+|+||+.|++.||| +|+|+...+. ..+ +
T Consensus 67 ----------------------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~ 118 (144)
T 2qnd_A 67 ----------------------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMV 118 (144)
T ss_dssp ----------------------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEE
T ss_pred ----------------------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCee
Confidence 11458999999999999999999999999997 9999864322 122 4
Q ss_pred EEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 635 VIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 635 ~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
.|+|+|++++|+.|+.||++.|.+
T Consensus 119 ~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 119 PFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999875
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.71 E-value=3.8e-17 Score=150.55 Aligned_cols=137 Identities=19% Similarity=0.308 Sum_probs=100.6
Q ss_pred ceEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 045766 316 ILTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIP 395 (663)
Q Consensus 316 ~~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~ 395 (663)
.++.+|.||.+.+|.+||++|++|++|++++| |++..... ..++.+...+++ +++..+...+.-
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~-~~~~~i~~~~~p----------~~v~~~~~~l~~--- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE-DTCTFHIYGEDQ----------DAVKKARSFLEF--- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET-TTTEEEEEESSH----------HHHHHHHHHHCE---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC-CchheeeccCCH----------HHHHHHHHhhhc---
Confidence 46889999999999999999999999999999 44432221 233334334444 223222221111
Q ss_pred CCCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCc-eEEEecCCCCCCCCCCCC--cEEEEEecHHHHHHHHHHHHH
Q 045766 396 DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGA-YIRILGKDQIPKCASENE--EVVLINGEFEAVQEALFQITT 472 (663)
Q Consensus 396 ~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa-~I~i~~~~~~p~~~~~~~--~~v~I~G~~~~v~~A~~~I~~ 472 (663)
...++.||.+++|.+|||+|.+|+.|++.||+ +|+|.+.++... ..++ ..|+|+|++++|+.|+.+|..
T Consensus 67 ------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 ------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLDY 138 (144)
T ss_dssp ------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHHH
Confidence 23899999999999999999999999999997 999965443211 1233 358999999999999999999
Q ss_pred HHhh
Q 045766 473 RLRH 476 (663)
Q Consensus 473 ~l~~ 476 (663)
+|.+
T Consensus 139 ~l~~ 142 (144)
T 2qnd_A 139 HLNY 142 (144)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.57 E-value=3.2e-15 Score=146.42 Aligned_cols=144 Identities=21% Similarity=0.190 Sum_probs=110.1
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEec-----HHHHHHHHHHHHHHH
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE-----FEAVQEALFQITTRL 474 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~l 474 (663)
.+...++.||.+.+|.|||++|++|+.|+++|||+|++. ..++.|+|.|+ ++++++|+.+|..++
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~----------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID----------SETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC----------TTTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE----------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 346779999999999999999999999999999999992 13567899886 699999999999988
Q ss_pred hhccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 045766 475 RHHFFRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRP 554 (663)
Q Consensus 475 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (663)
+............ ++ +
T Consensus 102 rg~~~e~g~~ll~------------------------------------------------------dd---~------- 117 (219)
T 2e3u_A 102 RGFSPERAFRLLN------------------------------------------------------EG---E------- 117 (219)
T ss_dssp TTCCHHHHGGGGS------------------------------------------------------TT---C-------
T ss_pred ccCCccccceecc------------------------------------------------------CC---c-------
Confidence 5421111000000 00 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEe-----------cCCCcCeeecCCChhHHHHHHHcCCEEE
Q 045766 555 GMPPHMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVV-----------PRSLVPIIQGEDGACLKQIRQISDAKIT 623 (663)
Q Consensus 555 g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~I-----------P~~~vg~IIGkgG~~I~~I~~~sGa~I~ 623 (663)
.-..+.| +...+|+||||+|++|+.|++.|||+|.
T Consensus 118 ----------------------------------~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~ 163 (219)
T 2e3u_A 118 ----------------------------------YLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVS 163 (219)
T ss_dssp ----------------------------------EEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEE
T ss_pred ----------------------------------cceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEE
Confidence 0000111 1236899999999999999999999999
Q ss_pred EeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 624 ITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 624 i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
|.+ +.|+|.|++++++.|+.+|+++|..
T Consensus 164 v~~-------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 164 VYG-------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp EET-------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ECC-------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 963 5799999999999999999999843
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=121.40 Aligned_cols=72 Identities=33% Similarity=0.525 Sum_probs=67.7
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
..+.+|.||.+++|+|||+||++|++|++.|||+|+|+++.+++.++.|+|+|++++|++|+.||++++.+|
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 367889999999999999999999999999999999998777788999999999999999999999999876
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.53 E-value=1.7e-14 Score=119.63 Aligned_cols=73 Identities=37% Similarity=0.535 Sum_probs=67.4
Q ss_pred CcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 587 PHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 587 ~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
+..+.++.||.+++|+||||+|++|++|++.|||+|+|+++.+++.++.|+|+|++++|++|+.+|++++...
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3477899999999999999999999999999999999998766778899999999999999999999998753
No 18
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.52 E-value=6.8e-15 Score=144.08 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=101.4
Q ss_pred EEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcC---
Q 045766 318 TFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAI--- 394 (663)
Q Consensus 318 ~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~--- 394 (663)
..++.||.+.+|.|||++|++|+.|+++|||+|++.. .++.|+|.++... ....++.+|...+........
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t-~d~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKET-EDPLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTC-CSHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCC-CCHHHHHHHHHHHHHHhccCCccc
Confidence 5689999999999999999999999999999999952 3567999887421 111223333333332221000
Q ss_pred --CCCCCcceEEEEEecc-----------cceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHH
Q 045766 395 --PDNREQTVMTRLLVAS-----------NQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFE 461 (663)
Q Consensus 395 --~~~~~~~~~~~l~Vp~-----------~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~ 461 (663)
.-..+......+.|+. ..+|+|||++|++|+.|++.|||+|.|. ++.|+|.|+++
T Consensus 109 g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------------~~~v~i~G~~~ 176 (219)
T 2e3u_A 109 AFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------------GKTVAIIGNPI 176 (219)
T ss_dssp HGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------------TTEEEEEECHH
T ss_pred cceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------------CeEEEEEeCHH
Confidence 0001112222344432 2689999999999999999999999992 35799999999
Q ss_pred HHHHHHHHHHHHHhh
Q 045766 462 AVQEALFQITTRLRH 476 (663)
Q Consensus 462 ~v~~A~~~I~~~l~~ 476 (663)
+++.|+.+|++++..
T Consensus 177 ~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 177 QIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999976
No 19
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=1.2e-14 Score=120.53 Aligned_cols=73 Identities=33% Similarity=0.521 Sum_probs=66.3
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
..+.+|.||.+++|+||||||++|++|++.|||+|+|+++.+++.++.|+|+|++++|++|+.||++++.+++
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 4678899999999999999999999999999999999987677789999999999999999999999998763
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.49 E-value=1.5e-14 Score=121.85 Aligned_cols=74 Identities=36% Similarity=0.521 Sum_probs=67.9
Q ss_pred CCcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 586 PPHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 586 ~~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
.+..+.+|.||.+++|.||||+|++|++|++.|||+|+|++..+++.++.|+|+|++++|++|+.+|++++...
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34577889999999999999999999999999999999998766778899999999999999999999998753
No 21
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.48 E-value=4e-14 Score=115.75 Aligned_cols=71 Identities=35% Similarity=0.540 Sum_probs=63.6
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCC---CCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDP---KPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~---~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
.+.++.||.+++|+|||+||++|++|++.|||+|+|++. .+++.++.|+|+|+++++++|+.+|+++|.+|
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC--
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999974 24567899999999999999999999998754
No 22
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.47 E-value=7.9e-14 Score=118.19 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=68.3
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcccc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSETE 661 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~~ 661 (663)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|++..++..++.|+|+|++++|++|+.||+++|.....
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 46788999999999999999999999999999999999876667789999999999999999999999987654
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.44 E-value=7.1e-14 Score=113.06 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=63.6
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
..+++.||.+.+|.||||||++|++|++.|||+|+|++. +..+|.|+|+|+++++++|+.+|.++|.+
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999876 46789999999999999999999999875
No 24
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=119.20 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=65.4
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
..++|.||.+++|.||||+|++|++|+++|||+|+|++......+|.|+|+|++++|++|+.||++++....
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 568899999999999999999999999999999999876556678999999999999999999999987643
No 25
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.42 E-value=5.8e-13 Score=111.16 Aligned_cols=71 Identities=14% Similarity=0.310 Sum_probs=63.8
Q ss_pred CcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCC--CCcceEEEEEcCHHHHHHHHHHHHHHHh
Q 045766 587 PHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKP--GATETVIIISGTPEQTHAAQSLIQAFVM 657 (663)
Q Consensus 587 ~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~--~~~~r~v~IsGt~e~v~~A~~lI~~~v~ 657 (663)
+....+|.||.+++|.||||+|++|++|++.|||+|+|++... ...+|.|+|+|+++++++|+++|++++.
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999999999999997532 4568899999999999999999999875
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=9.8e-14 Score=116.45 Aligned_cols=73 Identities=34% Similarity=0.533 Sum_probs=66.0
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCC---CCCcceEEEEEcCHHHHHHHHHHHHHHHhcccc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSETE 661 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~---~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~~ 661 (663)
.+.++.||.+++|+|||+||++|++|++.|||+|+|++.. +++.++.|+|+|++++++.|+.+|+++|.....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 5678999999999999999999999999999999999742 456789999999999999999999999987543
No 27
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.41 E-value=2.3e-13 Score=129.79 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=111.4
Q ss_pred EEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEE-----ecHHHHHHHHHHHHHHHhhc
Q 045766 403 MTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLIN-----GEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 403 ~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~l~~~ 477 (663)
..++.||...+|.|||++|++++.|++.+|++|++. ..++.|+|+ |++.++.+|..+|..+.+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id----------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD----------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE----------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE----------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999992 246788888 99999999999999988764
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 045766 478 FFRDAFPSINRPLNPTFLDQVSPFPSFIGRRELSPPGMYSNFGPSFHKFDAVGGPPPPGSFHPHDDHSAFMHHIHRPGMP 557 (663)
Q Consensus 478 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 557 (663)
...+.+.... ++ +
T Consensus 75 ~~e~A~~Ll~------------------------------------------------------Dd---~---------- 87 (191)
T 1tua_A 75 PPEKAFRLLE------------------------------------------------------ED---Q---------- 87 (191)
T ss_dssp CHHHHGGGGS------------------------------------------------------TT---E----------
T ss_pred CHHHhhhccc------------------------------------------------------Cc---c----------
Confidence 3322110000 00 0
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCcceEEEEe----------cCCCcCeeecCCChhHHHHHHHcCCEEEEeCC
Q 045766 558 PHMPDMKPWGPQGLMEVGGPMGFPDFVGPPHRRVPVVV----------PRSLVPIIQGEDGACLKQIRQISDAKITITDP 627 (663)
Q Consensus 558 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~I----------P~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~ 627 (663)
.-..+.| +....|+|||++|.+|+.|+..|||+|.|.+
T Consensus 88 -------------------------------~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~- 135 (191)
T 1tua_A 88 -------------------------------ILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE- 135 (191)
T ss_dssp -------------------------------EEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-
T ss_pred -------------------------------eeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-
Confidence 0011222 2346899999999999999999999999963
Q ss_pred CCCCcceEEEEEcCHHHHHHHHHHHHHHHh
Q 045766 628 KPGATETVIIISGTPEQTHAAQSLIQAFVM 657 (663)
Q Consensus 628 ~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~ 657 (663)
+.|.|.|++++++.|+..|+.+|.
T Consensus 136 ------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 136 ------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp ------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred ------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 489999999999999999999985
No 28
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=116.71 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=64.6
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCC---CCCcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPK---PGATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~---~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
.+++|.||.+++|+||||+|++|++|+++|||+|+|.+.. .+..++.|+|+|++++|++|+.+|+++|....
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999999999999999998753 23467999999999999999999999987654
No 29
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=112.95 Aligned_cols=69 Identities=28% Similarity=0.455 Sum_probs=62.2
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|++.. .++.|+|+|++++|++|+++|++.+...
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999998643 2579999999999999999999977653
No 30
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=7.9e-13 Score=114.68 Aligned_cols=73 Identities=32% Similarity=0.355 Sum_probs=65.1
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCC--CcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPG--ATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~--~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
....+|.||.+++|.||||+|++|++|++.|||+|+|++..++ ..++.|+|+|++++|++|+++|+++|..+.
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 4678899999999999999999999999999999999875433 257999999999999999999999997543
No 31
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=5e-13 Score=113.71 Aligned_cols=73 Identities=16% Similarity=0.408 Sum_probs=65.3
Q ss_pred CcceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCC--CCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 587 PHRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKP--GATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 587 ~~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~--~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
.....+|.||.+++|+||||+|++|++|++.|||+|+|++... ...+|.|+|+|++++|++|+.+|++++...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3467889999999999999999999999999999999987532 346899999999999999999999998754
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.37 E-value=5.2e-13 Score=107.95 Aligned_cols=70 Identities=30% Similarity=0.484 Sum_probs=63.6
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhh
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRH 476 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 476 (663)
..++++|.||.+.+|.|||++|++|++|+++|||+|++.+. ...+|.|+|.|+++++.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999432 14689999999999999999999999986
No 33
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.36 E-value=3.4e-13 Score=114.23 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=66.0
Q ss_pred CCceEEEEEeeccceeeeecCCCccccchhhccCCeEEEcCCCCCCCceEEEEEeCCCcccchhhhhhhhhh
Q 045766 43 PGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIER 114 (663)
Q Consensus 43 ~~~~~~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~~~g~~ervi~I~G~~e~~~~a~~~~~~~~~ 114 (663)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|+|+|+|+.++++.|+.|+..+..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998778899999999999999999988875443
No 34
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.34 E-value=1.6e-12 Score=123.94 Aligned_cols=141 Identities=21% Similarity=0.329 Sum_probs=100.0
Q ss_pred EEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCC--CCCChHHHHHHHHHHHHh--hcC
Q 045766 319 FRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPD--DRISAPQDAVLRVQTRIA--RAI 394 (663)
Q Consensus 319 ~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~--~~v~~a~~ai~~i~~~i~--~~~ 394 (663)
+++.||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|+.+.... ..+..|.+.|..+..-.. +..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~ 80 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAF 80 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHG
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhh
Confidence 68999999999999999999999999999999995 346678888433110 122233333322221000 000
Q ss_pred CCCCCcceEEEEEecc----------cceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHH
Q 045766 395 PDNREQTVMTRLLVAS----------NQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQ 464 (663)
Q Consensus 395 ~~~~~~~~~~~l~Vp~----------~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~ 464 (663)
.-..+......|.++. ...|+|||++|.+++.|+..|||+|.| .+..|.|.|++++++
T Consensus 81 ~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v------------~~~~v~i~G~~~~i~ 148 (191)
T 1tua_A 81 RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINV------------GEYEVAIIGDYERAM 148 (191)
T ss_dssp GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEE------------CSSEEEEEEEHHHHH
T ss_pred hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEE------------cCCEEEEEeChHHHH
Confidence 0011222333444542 358999999999999999999999999 134899999999999
Q ss_pred HHHHHHHHHHhh
Q 045766 465 EALFQITTRLRH 476 (663)
Q Consensus 465 ~A~~~I~~~l~~ 476 (663)
.|+..|++++..
T Consensus 149 ~Ar~~i~~li~g 160 (191)
T 1tua_A 149 AAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999965
No 35
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=3.7e-13 Score=111.60 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=64.0
Q ss_pred CceEEEEEeeccceeeeecCCCccccchhhccCCeEEEcCCCCCCCceEEEEEeCCCcccchhhhhhhh
Q 045766 44 GGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASI 112 (663)
Q Consensus 44 ~~~~~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~~~g~~ervi~I~G~~e~~~~a~~~~~~~ 112 (663)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|++++++.|+.|+...
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999977788999999999999999999887643
No 36
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=1.7e-12 Score=106.01 Aligned_cols=73 Identities=32% Similarity=0.502 Sum_probs=62.8
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhh
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRH 476 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 476 (663)
.+.+|.||.+++|.|||++|++|++|++.|||+|+|.+.++. ...+.++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999543221 1235689999999999999999999999865
No 37
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=106.05 Aligned_cols=73 Identities=32% Similarity=0.565 Sum_probs=64.9
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
...+.+|.||.+++|.|||++|++|++|++.|||+|+|.+. +..+.++.|+|+|+++++++|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45889999999999999999999999999999999999431 22367899999999999999999999998763
No 38
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.30 E-value=4.3e-12 Score=105.08 Aligned_cols=73 Identities=23% Similarity=0.493 Sum_probs=64.7
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|.+ . .| ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-~-~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE-P-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC-T-TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC-C-CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999999932 1 12 356899999999999999999999999873
No 39
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.30 E-value=1.5e-12 Score=104.60 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=60.3
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHH
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFV 656 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v 656 (663)
.+.++.||.++||.|||+||++|++|+++|||+|+|++.. ..++.|+|+|+++++++|+.+|++++
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999998753 35689999999999999999998764
No 40
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=3.8e-12 Score=108.63 Aligned_cols=71 Identities=30% Similarity=0.366 Sum_probs=63.5
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCC-CCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKP-GATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~-~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
.+++|.||..+||.|||+||++|++|++.|||+|+|++... ...++.|+|+|+++++++|+.+|+.++..-
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999987532 235789999999999999999999987643
No 41
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=107.79 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCCCceEEEEEeeccceeeeecCCCccccchhhccCCeEEEcCCCCCCCceEEEEEeCCCcccchhhhhhhhh
Q 045766 41 SFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASDNKKETSENLEASIE 113 (663)
Q Consensus 41 ~~~~~~~~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~~~g~~ervi~I~G~~e~~~~a~~~~~~~~ 113 (663)
..++.++++|.||.+++|+||||+|++||+|+++|||+|+|+.. .++|+++|+|++++++.|+.++..+.
T Consensus 5 ~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 5 SSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp CSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999863 24799999999999999999987543
No 42
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.28 E-value=7.1e-12 Score=104.50 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=64.0
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhh
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRH 476 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 476 (663)
...+.+|.||.+++|.|||++|++|++|+++|||+|.+.. +..+ ....++.|+|+|+++++++|+.+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999999999943 3221 235789999999999999999999998864
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=4.5e-12 Score=107.69 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
..+.++.||.++||.|||+||++|++|+++|||+|+|++... ...+.|+|+|++++|++|+++|+.++..
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999986532 3468999999999999999999998764
No 44
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=3.4e-12 Score=108.56 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCCceEEEEEeeccceeeeecCCCccccchhhccCCeEEEcCCCC--CCCceEEEEEeCCCcccchhhhhhhhh
Q 045766 41 SFPGGIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVS--GSDERLVVIEASDNKKETSENLEASIE 113 (663)
Q Consensus 41 ~~~~~~~~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~~~--g~~ervi~I~G~~e~~~~a~~~~~~~~ 113 (663)
..++.++++|+||.+++|.||||+|++|++|+++|||+|+|.+... ...+|+|+|+|+.++++.|+.++..+.
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 84 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELI 84 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999997532 447999999999999999998876443
No 45
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.1e-12 Score=108.00 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=63.1
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
..+.+|.||.+++|.|||+||++|++|+++|||+|+|+++.. .++.|+|+|+++++++|+.+|++++....
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--PSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--SCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--CCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 367889999999999999999999999999999999986532 34799999999999999999999886543
No 46
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=4.7e-12 Score=106.11 Aligned_cols=75 Identities=31% Similarity=0.479 Sum_probs=64.7
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcc
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHF 478 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 478 (663)
.+.+|.||.+++|.|||++|++|++|++.|||+|+|.+.++. ...+.++.|+|+|+++++.+|+.+|.+++.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999443221 122568999999999999999999999998744
No 47
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=7.2e-12 Score=109.10 Aligned_cols=74 Identities=18% Similarity=0.393 Sum_probs=63.9
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
.+.+|.||.+++|+|||++|++|++|+++|||+|+|. ++..+. ....++.|+|+|++++|++|+.+|.+++.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~-~~~~~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEIS-RQLPPN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEEC-CCCCTT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEc-CccCCC-CCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999994 332222 2346799999999999999999999998774
No 48
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.24 E-value=7.7e-12 Score=105.24 Aligned_cols=75 Identities=23% Similarity=0.480 Sum_probs=65.9
Q ss_pred CCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 398 REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 398 ~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
.....+.+|.||.+++|.|||++|++|++|+++|||+|+|. +. .| ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~-~~-~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKID-EP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEEC-SC-CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEec-CC-CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34568999999999999999999999999999999999993 21 12 356899999999999999999999999874
No 49
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.20 E-value=2.9e-11 Score=104.79 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=65.8
Q ss_pred CcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcc
Q 045766 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHHF 478 (663)
Q Consensus 399 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 478 (663)
..+.+.+|.||.+++|.|||++|++|++|+++|||+|+|.+... + ....++.|+|+|+++++++|+.+|.+++.+..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 45688999999999999999999999999999999999943221 1 12358999999999999999999999998743
No 50
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=1.3e-11 Score=106.63 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=61.8
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMS 658 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~ 658 (663)
...++.||.++||.|||+||++|++|+++|||+|+|++... ..+.|+|+|+++++++|+.+|+.++..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999987533 346999999999999999999998764
No 51
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=105.26 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=62.7
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
..+++|.||.++++.|||++|++|++|+++|||+|+|.++. + ...++.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999994322 1 246889999999999999999999999874
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=3.4e-11 Score=102.28 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 398 REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 398 ~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
.+..++..|.||.++++.|||++|++|++|+++|||+|+|++.. ...++.|+|+|++++|++|+.+|..++.+.
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999993221 134679999999999999999999999874
Q ss_pred c
Q 045766 478 F 478 (663)
Q Consensus 478 ~ 478 (663)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 53
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=4e-11 Score=102.28 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=64.1
Q ss_pred cceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 400 QTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 400 ~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
...+..|.||.++++.|||++|++|++|+++|||+|+|++.. .|. ..++.|+|+|+.+++++|+.+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g-~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD-DGN---QPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTT-TCS---SCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCC-CCC---CCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999994322 121 36789999999999999999999998873
No 54
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.14 E-value=3.1e-11 Score=96.90 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=59.1
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHH
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRL 474 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 474 (663)
..+..|.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+.+++++|+.+|..++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999993221 24679999999999999999998764
No 55
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=3.5e-11 Score=102.22 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 398 REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 398 ~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
.+..++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ ..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 34568999999999999999999999999999999999993221 23578999999999999999999999874
Q ss_pred c
Q 045766 478 F 478 (663)
Q Consensus 478 ~ 478 (663)
.
T Consensus 86 ~ 86 (94)
T 2cte_A 86 D 86 (94)
T ss_dssp H
T ss_pred c
Confidence 3
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=7.7e-11 Score=101.30 Aligned_cols=66 Identities=29% Similarity=0.370 Sum_probs=60.0
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHH-cCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQI-SDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSE 659 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~-sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~ 659 (663)
.+.+|.||.++|++|||++|++|++|++. ++++|.||+ .++.|+|+|++++|++|+.+|+.++..-
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999997 599999987 3579999999999999999999988653
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=7.1e-11 Score=100.10 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=63.9
Q ss_pred cceEEEEecCCCcCeeecCCChhHHHHHHHc-CCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 045766 588 HRRVPVVVPRSLVPIIQGEDGACLKQIRQIS-DAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVMSET 660 (663)
Q Consensus 588 ~~~~~v~IP~~~vg~IIGkgG~~I~~I~~~s-Ga~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~~~~ 660 (663)
..+.+|.||.++|+.|||+||.+|++|+++| ||+|+|++. ++..+.|+|+|+.+++++|+.+|++++..-.
T Consensus 16 ~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 16 IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred cEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 4678899999999999999999999999999 999999864 4456799999999999999999999987544
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.4e-11 Score=105.92 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=71.7
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhhcCCCCCCcceEEEEEecccceeEEEcCCchHHHHHHHH-hCceEEEecCCCCC
Q 045766 366 ISGPAHPDDRISAPQDAVLRVQTRIARAIPDNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKL-SGAYIRILGKDQIP 444 (663)
Q Consensus 366 I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~-tGa~I~i~~~~~~p 444 (663)
|+|++ ++|..|+..|... ....++.+|.||..+|++|||++|++|++|+++ ++++|+| |
T Consensus 5 i~G~~---~~V~~A~~~i~~~-----------~~~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~f------p 64 (102)
T 2ctf_A 5 SSGEP---EKLGQALTEVYAK-----------ANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEF------T 64 (102)
T ss_dssp CCCCC---CCCCCSCCCCCCC-----------CCCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEE------C
T ss_pred cCcCH---HHHHHHHHHHHHH-----------hcCeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEe------C
Confidence 57877 5666555544321 122378999999999999999999999999997 5999999 3
Q ss_pred CCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhcc
Q 045766 445 KCASENEEVVLINGEFEAVQEALFQITTRLRHHF 478 (663)
Q Consensus 445 ~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 478 (663)
. .++.|+|+|+++.|++|+.+|..++++..
T Consensus 65 ~----~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 65 E----GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp S----SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred C----CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 2 35689999999999999999999998743
No 59
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.7e-10 Score=99.63 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=62.0
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhhc
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRHH 477 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 477 (663)
+.+..|.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.+++++|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 58899999999999999999999999999999999993221 23468999999999999999999998873
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=6.5e-10 Score=94.16 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCcceEEEEEecccceeEEEcCCchHHHHHHHHh-CceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhh
Q 045766 398 REQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLS-GAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRH 476 (663)
Q Consensus 398 ~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 476 (663)
.+..++..|.||.++++.|||++|++|++|+++| ||+|+|+ ++ .+..+.|+|.|+.++|++|+.+|..++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~-~~------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFP-VE------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECC-CT------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeC-CC------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4556899999999999999999999999999999 9999993 22 13456899999999999999999999987
Q ss_pred c
Q 045766 477 H 477 (663)
Q Consensus 477 ~ 477 (663)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=5e-09 Score=87.03 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=56.0
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCE-EEEeCCCCCCcceEEEEEc-CHHHHHHHHHHHHHH
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAK-ITITDPKPGATETVIIISG-TPEQTHAAQSLIQAF 655 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~-I~i~~~~~~~~~r~v~IsG-t~e~v~~A~~lI~~~ 655 (663)
...++.||.+++|.|||+||.+|++|++.|||+ |.|.+. +..|+|.| +.+++++|+.+|+..
T Consensus 15 ~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-----dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 15 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED-----TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp EEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred eEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-----CCEEEEEECCHHHHHHHHHHHHhh
Confidence 567899999999999999999999999999998 999742 36899999 899999999999653
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=3e-08 Score=82.36 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=57.3
Q ss_pred CcceEEEEEecccceeEEEcCCchHHHHHHHHhCce-EEEecCCCCCCCCCCCCcEEEEEe-cHHHHHHHHHHHHHHH
Q 045766 399 EQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAY-IRILGKDQIPKCASENEEVVLING-EFEAVQEALFQITTRL 474 (663)
Q Consensus 399 ~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~-I~i~~~~~~p~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~l 474 (663)
...+...|.||.+++|.|||++|++|++|++.|||+ |.+. ..+..|+|.| +.+++++|+.+|..+-
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~----------eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD----------EDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE----------cCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 456889999999999999999999999999999998 9992 1358899999 8999999997776543
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.32 E-value=8.7e-07 Score=79.35 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=58.1
Q ss_pred ceEEEEecCC------CcCeeecCCChhHHHHHHHcCCEEEEeCCC----------------CCCcceEEEEEc-CHHHH
Q 045766 589 RRVPVVVPRS------LVPIIQGEDGACLKQIRQISDAKITITDPK----------------PGATETVIIISG-TPEQT 645 (663)
Q Consensus 589 ~~~~v~IP~~------~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~----------------~~~~~r~v~IsG-t~e~v 645 (663)
.+..|.||.+ ++|.|||++|.+|++|+++|||+|.|.... ....+-.|.|++ +.+.+
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 5677999988 788999999999999999999999997521 011245788999 48999
Q ss_pred HHHHHHHHHHHhc
Q 045766 646 HAAQSLIQAFVMS 658 (663)
Q Consensus 646 ~~A~~lI~~~v~~ 658 (663)
++|+.+|+.+|..
T Consensus 87 ~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 87 KKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999854
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=2.1e-06 Score=75.23 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=53.7
Q ss_pred eEEEEecCC-------CcCeeecCCChhHHHHHHHcCCEEEEeCCCC----------CCcceEEEEEc-CHHHHHHHHHH
Q 045766 590 RVPVVVPRS-------LVPIIQGEDGACLKQIRQISDAKITITDPKP----------GATETVIIISG-TPEQTHAAQSL 651 (663)
Q Consensus 590 ~~~v~IP~~-------~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~----------~~~~r~v~IsG-t~e~v~~A~~l 651 (663)
+..|.||.+ ++|.|||++|.+|++|+++|||+|.|..... ...+-.|.|++ +++++++|+.|
T Consensus 13 ~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~ 92 (119)
T 2yqr_A 13 QDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKL 92 (119)
T ss_dssp EEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHH
Confidence 445666654 6799999999999999999999999973210 01233667765 59999999999
Q ss_pred HHHHHhcc
Q 045766 652 IQAFVMSE 659 (663)
Q Consensus 652 I~~~v~~~ 659 (663)
|+.+|..-
T Consensus 93 Ie~Ll~~v 100 (119)
T 2yqr_A 93 CENLLQTV 100 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhch
Confidence 99998753
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.25 E-value=2.2e-06 Score=76.71 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=60.9
Q ss_pred cceEEEEEeccc------ceeEEEcCCchHHHHHHHHhCceEEEecCCCCC-----------CCCCCCCcEEEEEe-cHH
Q 045766 400 QTVMTRLLVASN------QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIP-----------KCASENEEVVLING-EFE 461 (663)
Q Consensus 400 ~~~~~~l~Vp~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p-----------~~~~~~~~~v~I~G-~~~ 461 (663)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999988 788999999999999999999999996532111 00112355688999 588
Q ss_pred HHHHHHHHHHHHHhh
Q 045766 462 AVQEALFQITTRLRH 476 (663)
Q Consensus 462 ~v~~A~~~I~~~l~~ 476 (663)
.+++|+.+|..+|..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=4.6e-06 Score=73.12 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=57.2
Q ss_pred ceEEEEEeccc-------ceeEEEcCCchHHHHHHHHhCceEEEecCCCC---C--CCCCCCCcEEEEEe-cHHHHHHHH
Q 045766 401 TVMTRLLVASN-------QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQI---P--KCASENEEVVLING-EFEAVQEAL 467 (663)
Q Consensus 401 ~~~~~l~Vp~~-------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~---p--~~~~~~~~~v~I~G-~~~~v~~A~ 467 (663)
..+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... + ......+-.|.|.+ +.+++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46678888765 68999999999999999999999999533210 0 00112334677776 588999999
Q ss_pred HHHHHHHhh
Q 045766 468 FQITTRLRH 476 (663)
Q Consensus 468 ~~I~~~l~~ 476 (663)
.+|.+++..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999986
No 67
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.84 E-value=1.1e-05 Score=90.73 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHHhhcCCC-----CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCC
Q 045766 377 SAPQDAVLRVQTRIARAIPD-----NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENE 451 (663)
Q Consensus 377 ~~a~~ai~~i~~~i~~~~~~-----~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~ 451 (663)
..|+++...+++.+...+.. ....+....|.||.+.++.|||+||++||+|+++|||+|.| ..+
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I-----------~d~ 605 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQ-----------VDE 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEE-----------CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEE-----------cCC
Confidence 45666777777666654432 23346789999999999999999999999999999999999 346
Q ss_pred cEEEEEec-HHHHHHHHHHHHHHH
Q 045766 452 EVVLINGE-FEAVQEALFQITTRL 474 (663)
Q Consensus 452 ~~v~I~G~-~~~v~~A~~~I~~~l 474 (663)
..|.|.|+ .+.+++|+.+|..++
T Consensus 606 G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SEEEEEESSHHHHHHHHHHTTC--
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 78999997 678999998887654
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.76 E-value=9.7e-06 Score=72.90 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=54.4
Q ss_pred eEEEEEeccc------ceeEEEcCCchHHHHHHHHhCceEEEecCCCC------------CCCCCCCC-cEEEEEec-HH
Q 045766 402 VMTRLLVASN------QIGCLLGKGGSIIAEMRKLSGAYIRILGKDQI------------PKCASENE-EVVLINGE-FE 461 (663)
Q Consensus 402 ~~~~l~Vp~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~------------p~~~~~~~-~~v~I~G~-~~ 461 (663)
.+.+|.||.+ ++|.|||++|.++|+|+++|||+|.|..+... |.....++ --|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4668888855 48999999999999999999999999544311 00001112 25888884 32
Q ss_pred -----HHHHHHHHHHHHHhh
Q 045766 462 -----AVQEALFQITTRLRH 476 (663)
Q Consensus 462 -----~v~~A~~~I~~~l~~ 476 (663)
.+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999998863
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.72 E-value=2.4e-05 Score=70.33 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=52.0
Q ss_pred EEEEecC------CCcCeeecCCChhHHHHHHHcCCEEEEeCCCCC------------------CcceEEEEEcC-HH--
Q 045766 591 VPVVVPR------SLVPIIQGEDGACLKQIRQISDAKITITDPKPG------------------ATETVIIISGT-PE-- 643 (663)
Q Consensus 591 ~~v~IP~------~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~------------------~~~r~v~IsGt-~e-- 643 (663)
..|.||. +++|.|||++|.++++|+++|||+|.|-..... ..+--|.|++. ++
T Consensus 4 ~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~ 83 (140)
T 2bl5_A 4 EKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNR 83 (140)
T ss_dssp EEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHH
T ss_pred eEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhh
Confidence 4466664 458999999999999999999999999853210 01127889984 43
Q ss_pred ---HHHHHHHHHHHHHhc
Q 045766 644 ---QTHAAQSLIQAFVMS 658 (663)
Q Consensus 644 ---~v~~A~~lI~~~v~~ 658 (663)
.+++|+.+|+.+|..
T Consensus 84 ~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 84 AELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 799999999998864
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.72 E-value=4.8e-05 Score=66.86 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=60.6
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHHHHHh
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQAFVM 657 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~~~v~ 657 (663)
....+.|.++.++.|+|++|+.|+.|+..|.+.|++..-.. +....|+|.|++..-..|+.+|+.+..
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999997633 467899999999999999999988764
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.35 E-value=5.9e-05 Score=84.75 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=54.3
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcC-HHHHHHHHHHHHHHH
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGT-PEQTHAAQSLIQAFV 656 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt-~e~v~~A~~lI~~~v 656 (663)
.-.++.||.+.+|.|||+||.+|+.|++.|||+|.|.+ +..|.|.|+ +++.++|+++|.+++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999964 357999987 689999999998764
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.24 E-value=0.0004 Score=61.03 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=59.1
Q ss_pred eEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHHHHhh
Q 045766 402 VMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITTRLRH 476 (663)
Q Consensus 402 ~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 476 (663)
....|.|...+++.|+|++|+.|+.|+..|.|.|++. .- ..++.-.|+|.|++..-..|+.+|..+..-
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~-~~-----~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVN-VW-----GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEE-CC-----CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEe-cc-----CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999993 22 113567799999999999999999988765
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.24 E-value=0.00011 Score=83.50 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHHhhcCCC-----CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCC
Q 045766 376 ISAPQDAVLRVQTRIARAIPD-----NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASEN 450 (663)
Q Consensus 376 v~~a~~ai~~i~~~i~~~~~~-----~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~ 450 (663)
+..|+++...+++.+...+.. ....+....|.||.+.++.|||+||++||+|+++|||+|.+ ..
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi-----------~d 607 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDI-----------ND 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeE-----------EC
Confidence 345667777777776665442 22346678999999999999999999999999999999999 23
Q ss_pred CcEEEEEec-HHHHHHHHHHHHHHHhhc
Q 045766 451 EEVVLINGE-FEAVQEALFQITTRLRHH 477 (663)
Q Consensus 451 ~~~v~I~G~-~~~v~~A~~~I~~~l~~~ 477 (663)
+..|.|.+. .+.+++|+.+|..++.+.
T Consensus 608 dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 608 DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ------CCSCHHHHHHHHHC--------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 566788776 788999999998888653
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.89 E-value=0.00043 Score=62.59 Aligned_cols=98 Identities=22% Similarity=0.382 Sum_probs=72.4
Q ss_pred eEEEEEeeccccceeeccCchhHHhHHhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCC-
Q 045766 317 LTFRLLCHDERVGGVIGKGGAIIRSLKQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIP- 395 (663)
Q Consensus 317 ~~~~v~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~- 395 (663)
-.+.+.|+...+|..||++|++|+.|.++.|-+|.+-+-..+ + .+-+..+ +....-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~---------~~fI~na---LsPA~V~ 92 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------L---------ERIVKNL---FPGVKIE 92 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------H---------HHHHHHH---STTSCEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------H---------HHHHHHh---cCCceEE
Confidence 477889999999999999999999999999999998543211 0 0111111 111000
Q ss_pred ----CCCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEE
Q 045766 396 ----DNREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRI 437 (663)
Q Consensus 396 ----~~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i 437 (663)
...+......+.||.++.+..|||+|.+++-..+.||.+|.|
T Consensus 93 ~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 93 SINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp EEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred EEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 001345678899999999999999999999999999988887
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.47 E-value=0.00074 Score=61.03 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=36.7
Q ss_pred ceEEEEEeeccceeeeecCCCccccchhhccCCeEEEcCC
Q 045766 45 GIMFRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEET 84 (663)
Q Consensus 45 ~~~~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~ 84 (663)
.-.+.++|+...+|..||++|++|+.|+++.|-+|+|-+-
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 3578899999999999999999999999999999999874
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.41 E-value=0.00066 Score=77.19 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=11.6
Q ss_pred eEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcC-HHHHHHHHHHHHHHHh
Q 045766 590 RVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGT-PEQTHAAQSLIQAFVM 657 (663)
Q Consensus 590 ~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt-~e~v~~A~~lI~~~v~ 657 (663)
-.++.||.+.++.|||+||.+|+.|.+.|||+|.|.+. ..|.|.++ .++.++|+.+|..++.
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999999999642 45777776 8899999999988764
No 77
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.77 E-value=0.0078 Score=68.70 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHhhcCCC-----CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCC
Q 045766 377 SAPQDAVLRVQTRIARAIPD-----NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENE 451 (663)
Q Consensus 377 ~~a~~ai~~i~~~i~~~~~~-----~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~ 451 (663)
..|+++...+++.+...+.. ....+....+.||.+.++.|||++|.+|+.|.+++|+.|.+ ..+
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI-----------~~d 598 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-----------EDD 598 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEe-----------cCC
Confidence 45566666666666554432 12345678889999999999999999999999999999999 234
Q ss_pred cEEEEEec-HHHHHHHHHHHHHHHhh
Q 045766 452 EVVLINGE-FEAVQEALFQITTRLRH 476 (663)
Q Consensus 452 ~~v~I~G~-~~~v~~A~~~I~~~l~~ 476 (663)
..|.|.+. .+.+++|+..|..++.+
T Consensus 599 g~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 599 GTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------
T ss_pred ccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 56777665 55778887777766544
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.00 E-value=0.049 Score=53.50 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=64.0
Q ss_pred cccceeeccCchhHHhH-HhHhCCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCC-C---CCCc
Q 045766 326 ERVGGVIGKGGAIIRSL-KQETGCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIP-D---NREQ 400 (663)
Q Consensus 326 ~~vg~IIGk~G~~Ik~I-~~~tga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~-~---~~~~ 400 (663)
+-+|..||++|++|+.| ++-.|-+|.|-.-..+. ..-+ ...+....- + ..+.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp--------------------~~fi---~nalsPA~V~~V~i~~~~ 182 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP--------------------ARFV---ANALSPAKVVSVSVIDQT 182 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH--------------------HHHH---HHHTTTSCCSEEEEEETT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCCH--------------------HHHH---HhccCCcceEEEEEEcCC
Confidence 45899999999999999 55668888885432110 0111 111111000 0 0112
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCC
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKD 441 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 441 (663)
.....+.||..+.+.-|||+|.+++.-.+.||.+|.|.+..
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 25688999999999999999999999999999999995543
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.90 E-value=0.054 Score=56.26 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred cccceeeccCchhHHhHHhHh-CCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCCC----CCCc
Q 045766 326 ERVGGVIGKGGAIIRSLKQET-GCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIPD----NREQ 400 (663)
Q Consensus 326 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~~----~~~~ 400 (663)
+-+|..||++|++|+.|.++. |-+|.|-.-..+ . ..-+ ...+....-. ..+.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p-~~fi---~nalsPA~V~~V~~~~~~ 305 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------P-ARFV---ANALSPAKVVSVSVIDQT 305 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------H-HHHH---HHHTTTSCCSEEEEEETT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------------H-HHHH---HHhcCCcceeEEEEEcCC
Confidence 458999999999999999998 888888532111 0 0111 1111110000 0112
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCC
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKD 441 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 441 (663)
.....+.||..+.+..|||+|.+++-..+.||.+|.|....
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 35788999999999999999999999999999999995543
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.81 E-value=0.0083 Score=68.76 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHhhcCCC----CCCcceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCc
Q 045766 377 SAPQDAVLRVQTRIARAIPD----NREQTVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEE 452 (663)
Q Consensus 377 ~~a~~ai~~i~~~i~~~~~~----~~~~~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~ 452 (663)
..|+++...+++.+...+.. ....+....|.||.+.++.+||++|++||+|++++|+.|.+ ..+.
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI-----------~~dG 637 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITI-----------EDDG 637 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCCCTTSCBCCCC------------------CTTCCCCCSCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEe-----------cCCc
Confidence 45566666666665544332 12235567789999999999999999999999999999999 1245
Q ss_pred EEEEEec-HHHHHHHHHHHHHHH
Q 045766 453 VVLINGE-FEAVQEALFQITTRL 474 (663)
Q Consensus 453 ~v~I~G~-~~~v~~A~~~I~~~l 474 (663)
.|.|... .+..++|+..|..+.
T Consensus 638 ~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 638 TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp --CCCBSSHHHHCC---------
T ss_pred eEEEecCCHHHHHHHHHHHHHhc
Confidence 6777665 556677766665554
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.58 E-value=0.034 Score=63.50 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcC-HHHHHHHHHHHHHHHh
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGT-PEQTHAAQSLIQAFVM 657 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt-~e~v~~A~~lI~~~v~ 657 (663)
.-.++.||.+.++.|||+||.+|+.|.+.+|+.|.|.+ +..|.|++. .+..++|+.+|..++.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 34668999999999999999999999999999999964 246777665 6678888888877653
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=91.46 E-value=0.18 Score=52.41 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=35.9
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCC
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDP 627 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~ 627 (663)
..+.+.||....+..|||+|+|++-..+.||.+|.|...
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 467899999999999999999999999999999999643
No 83
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=91.18 E-value=0.064 Score=52.67 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=35.9
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCC
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDP 627 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~ 627 (663)
..+.+.||....+.-|||+|+|++-..+.||.+|.|...
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 467899999999999999999999999999999999753
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.00 E-value=0.21 Score=51.67 Aligned_cols=92 Identities=26% Similarity=0.402 Sum_probs=64.2
Q ss_pred cccceeeccCchhHHhHHhHh-CCeEEEeccCCCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhhcCC-C--C-CCc
Q 045766 326 ERVGGVIGKGGAIIRSLKQET-GCDIKVMEAVSGTEDRLIVISGPAHPDDRISAPQDAVLRVQTRIARAIP-D--N-REQ 400 (663)
Q Consensus 326 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~~~er~v~I~G~~~~~~~v~~a~~ai~~i~~~i~~~~~-~--~-~~~ 400 (663)
+-+|+.||.+|.+|+.+.++. |-+|.+-.-..+. + .- +...+....- + . .+.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d~-------------------~-~f---i~nal~Pa~v~~v~~~d~~ 301 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDP-------------------K-QL---IANALAPATVIEVEILDKE 301 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSH-------------------H-HH---HHHHTCSSCCSEEEEEETT
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCCH-------------------H-HH---HHHhcCccEEEEEEEEcCC
Confidence 458999999999999999998 7788774321110 0 11 1111111000 0 0 122
Q ss_pred ceEEEEEecccceeEEEcCCchHHHHHHHHhCceEEEecC
Q 045766 401 TVMTRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGK 440 (663)
Q Consensus 401 ~~~~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~ 440 (663)
.....+.||..+.+.-|||+|.+++.-.+.||.+|.|.+.
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 3578899999999999999999999999999999999543
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=84.07 E-value=0.19 Score=57.66 Aligned_cols=46 Identities=41% Similarity=0.658 Sum_probs=15.9
Q ss_pred EEEEeeccceeeeecCCCccccchhhccCCeEEEcCCCCCCCceEEEEEeCC
Q 045766 48 FRVLCPVSKIDGVIGKDGEMMSQISQDTGVTIRVEETVSGSDERLVVIEASD 99 (663)
Q Consensus 48 ~rilvp~~~vg~IIGk~G~~I~~i~~etga~I~v~~~~~g~~ervi~I~G~~ 99 (663)
..+-||.+++|.|||++|.+|+.|.++||+.|+|.+ +..|.|+...
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~ 645 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAAD 645 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSS
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCC
Confidence 346689999999999999999999999999999985 3456676543
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=67.05 E-value=2.7 Score=43.30 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=35.0
Q ss_pred ceEEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEe
Q 045766 589 RRVPVVVPRSLVPIIQGEDGACLKQIRQISDAKITIT 625 (663)
Q Consensus 589 ~~~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~ 625 (663)
..+.+.||....+.-|||+|+|++-..+.||.+|.|.
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 5688999999999999999999999999999999985
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=57.15 E-value=1.9 Score=35.47 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=24.7
Q ss_pred EEEEEeeccceeeeecCCCccccchhhc
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQISQD 74 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~~e 74 (663)
..+|.|....-|.|||++|..|.+|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 5678888899999999999999998876
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=52.87 E-value=3.5 Score=37.29 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=24.4
Q ss_pred EEEEEeeccceeeeecCCCccccchhhcc
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQISQDT 75 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~~et 75 (663)
++.+-+-.+..|.||||.|.|++.|+--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 45566678899999999999999998766
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=47.57 E-value=7.2 Score=35.20 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.9
Q ss_pred EEEEEeeccccceeeccCchhHHhHHhHh
Q 045766 318 TFRLLCHDERVGGVIGKGGAIIRSLKQET 346 (663)
Q Consensus 318 ~~~v~vp~~~vg~IIGk~G~~Ik~I~~~t 346 (663)
++.+.+..+..|.||||.|.+++.|+--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 56677888999999999999999988655
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=39.70 E-value=9.6 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.1
Q ss_pred EEEEEeeccccceeeccCchhHHhHHhH
Q 045766 318 TFRLLCHDERVGGVIGKGGAIIRSLKQE 345 (663)
Q Consensus 318 ~~~v~vp~~~vg~IIGk~G~~Ik~I~~~ 345 (663)
..++.|....-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567777788899999999999987764
No 91
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=39.04 E-value=30 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCccccccC
Q 045766 8 SKRPHDDDNHTEPNGKEKSQKLA 30 (663)
Q Consensus 8 ~~r~~~~~~~~~~~~~~~~~~~~ 30 (663)
+.|.|+ |.++.+..-||+++.
T Consensus 4 srrrhs--dendggq~hkrr~ts 24 (26)
T 3ul0_C 4 SRRRHS--DENDGGQPHKRRKTS 24 (26)
T ss_dssp CCCCCT--TSCSSCCCSCCCCCC
T ss_pred cccccc--cccCCCCcccccccc
Confidence 457777 344445566777665
No 92
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=39.00 E-value=34 Score=32.96 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=44.5
Q ss_pred EEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEecHHHHHHHHHHHHH
Q 045766 405 RLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGEFEAVQEALFQITT 472 (663)
Q Consensus 405 ~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 472 (663)
-+.++...+.+++|+++..++.|.+.+++.|.+ ..+..|=|.++......+...|..
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v-----------G~NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVV-----------GQNGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE-----------CTTSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEE-----------ECCcEEEEeCCchhHHHHHHHHHH
Confidence 457889999999999999999999999999999 345567788887755544444433
No 93
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.46 E-value=46 Score=32.05 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=46.0
Q ss_pred EEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEcCHHHHHHHHHHHH
Q 045766 591 VPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISGTPEQTHAAQSLIQ 653 (663)
Q Consensus 591 ~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsGt~e~v~~A~~lI~ 653 (663)
+-+.++...+.+++|+++..++.|.+.+++.|.+- .+-.|-|.++......+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG------~NG~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG------QNGLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC------TTSEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE------CCcEEEEeCCchhHHHHHHHHH
Confidence 44789999999999999999999999999999993 2346779998876666655554
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=28.39 E-value=13 Score=36.03 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=24.9
Q ss_pred EEEEEeeccceeeeecCCCccccchhhcc
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQISQDT 75 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~~et 75 (663)
..+|.|....-|.|||++|..|++|+++-
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46778888999999999999999988764
No 95
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.35 E-value=90 Score=30.01 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=45.4
Q ss_pred EEEEecCCCcCeeecCCChhHHHHHHHcCCEEEEeCCCCCCcceEEEEEc-CHHHHHHHHHHHHH
Q 045766 591 VPVVVPRSLVPIIQGEDGACLKQIRQISDAKITITDPKPGATETVIIISG-TPEQTHAAQSLIQA 654 (663)
Q Consensus 591 ~~v~IP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~IsG-t~e~v~~A~~lI~~ 654 (663)
+-+.++...+..++|++|..++.|.+.+++.|.+-. +..|-|.+ ++..+..+...|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999943 34666775 56566665555543
No 96
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.05 E-value=13 Score=35.41 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.5
Q ss_pred EEEEEeeccceeeeecCCCccccchhhc
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQISQD 74 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~~e 74 (663)
..++.|....-|.|||++|..|++|+++
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567777888999999999999998765
No 97
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=23.96 E-value=17 Score=35.39 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=25.8
Q ss_pred eEEEEEeeccceeeeecCCCccccchhhcc
Q 045766 46 IMFRVLCPVSKIDGVIGKDGEMMSQISQDT 75 (663)
Q Consensus 46 ~~~rilvp~~~vg~IIGk~G~~I~~i~~et 75 (663)
...+|.|....-|.|||++|..|++|+++-
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 357788888999999999999999988863
No 98
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=23.63 E-value=96 Score=29.82 Aligned_cols=59 Identities=8% Similarity=0.136 Sum_probs=44.0
Q ss_pred EEEEecccceeEEEcCCchHHHHHHHHhCceEEEecCCCCCCCCCCCCcEEEEEec-HHHHHHHHHHHHHH
Q 045766 404 TRLLVASNQIGCLLGKGGSIIAEMRKLSGAYIRILGKDQIPKCASENEEVVLINGE-FEAVQEALFQITTR 473 (663)
Q Consensus 404 ~~l~Vp~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~p~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~ 473 (663)
.-+.++...+.+++|++|..+..|.+++++.|-+ ..+..|-|.+. ...+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v-----------G~NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV-----------ARNGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE-----------ETTTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE-----------eCCCEEEEecCCHHHHHHHHHHHHHH
Confidence 4467889999999999999999999899999999 33566778864 44554444444433
No 99
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.03 E-value=13 Score=35.68 Aligned_cols=29 Identities=10% Similarity=0.355 Sum_probs=25.3
Q ss_pred EEEEEeeccceeeeecCCCccccchhhcc
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQISQDT 75 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~~et 75 (663)
..+|.|....-|.|||++|..|++|+++-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 57788888999999999999999988764
No 100
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=22.04 E-value=47 Score=19.75 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCC
Q 045766 2 SLPLTPSKRPHDD 14 (663)
Q Consensus 2 ~~~~~~~~r~~~~ 14 (663)
|-++.++|||.+=
T Consensus 2 srrrrprkrplew 14 (28)
T 3ukw_C 2 SRRRRPRKRPLEW 14 (28)
T ss_dssp -----CCCCCCCC
T ss_pred ccccccccCCccc
Confidence 4567788888874
No 101
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=20.39 E-value=18 Score=34.79 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEeeccceeeeecCCCccccchh
Q 045766 47 MFRVLCPVSKIDGVIGKDGEMMSQIS 72 (663)
Q Consensus 47 ~~rilvp~~~vg~IIGk~G~~I~~i~ 72 (663)
.+.+-+..+..|.||||.|++++.|+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQ 118 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQ 118 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHH
Done!