BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045767
         (737 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
           Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
           2.35 A R
          Length = 474

 Score = 34.3 bits (77), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 10/57 (17%)

Query: 438 NGIDYAVEEFLPEAAYRQCCHKVFTEMVKRFPAAPVQH---LFWSACRSTSEASFHK 491
           +G+ Y +E        R+   ++F E+ +R+P APV+H   +  +  R+ ++A  H+
Sbjct: 168 SGVSYXLEN-------RKXXXRLFPELFRRYPVAPVEHYPQVLLNNLRAVAQAGVHE 217


>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
          Length = 1230

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 454 RQCCHKVFTEMVKRFPAAPVQHL 476
           RQCC  + TE+V   P A  QH+
Sbjct: 451 RQCCFNMLTELVNVLPGALTQHI 473


>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
          Length = 1253

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 454 RQCCHKVFTEMVKRFPAAPVQHL 476
           RQCC  + TE+V   P A  QH+
Sbjct: 474 RQCCFNMLTELVNVLPGALTQHI 496


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,658,692
Number of Sequences: 62578
Number of extensions: 957005
Number of successful extensions: 1910
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1907
Number of HSP's gapped (non-prelim): 6
length of query: 737
length of database: 14,973,337
effective HSP length: 106
effective length of query: 631
effective length of database: 8,340,069
effective search space: 5262583539
effective search space used: 5262583539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)