Query 045767
Match_columns 737
No_of_seqs 291 out of 1393
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj2_A Probable WRKY transcrip 91.3 0.27 9.4E-06 39.7 5.0 41 206-246 37-77 (78)
2 2ayd_A WRKY transcription fact 91.0 0.25 8.5E-06 39.8 4.5 41 206-246 34-74 (76)
3 3hot_A Transposable element ma 86.5 19 0.00067 37.2 17.0 59 377-438 185-252 (345)
4 2rpr_A Flywch-type zinc finger 69.5 5.5 0.00019 32.8 4.7 45 195-246 27-74 (87)
5 3l3u_A POL polyprotein; DNA in 68.2 22 0.00076 32.1 9.3 64 365-440 9-72 (163)
6 3kks_A Integrase, IN; beta-str 51.1 41 0.0014 29.5 7.7 65 366-442 3-67 (152)
7 2ezd_A High mobility group pro 50.2 12 0.00041 22.9 2.4 19 693-711 2-20 (26)
8 3f9k_A Integrase; protein-prot 45.6 69 0.0024 30.2 8.8 63 366-440 60-122 (210)
9 1q1v_A DEK protein; winged-hel 44.0 46 0.0016 26.1 5.7 45 250-294 10-57 (70)
10 1ex4_A Integrase; SH3-like dom 37.1 69 0.0024 31.0 7.4 64 366-441 10-73 (239)
11 2ysa_A Retinoblastoma-binding 36.1 14 0.00048 27.6 1.5 16 719-734 5-20 (55)
12 2lju_A Putative oxidoreductase 33.1 62 0.0021 27.7 5.2 32 169-204 58-89 (108)
13 1cxq_A Avian sarcoma virus int 32.6 1.2E+02 0.0042 26.9 7.9 71 365-442 11-81 (162)
14 1c0m_A Protein (integrase); HI 31.6 90 0.0031 30.2 7.1 71 365-442 10-80 (238)
15 2l0z_A Glycoprotein G2; zinc-b 31.6 21 0.00072 24.6 1.6 15 623-637 21-35 (42)
16 3hph_A Integrase, IN; protein- 30.7 1.2E+02 0.0043 28.5 7.9 66 366-443 61-126 (219)
17 2jya_A AGR_C_3324P, uncharacte 30.5 41 0.0014 28.7 3.6 34 168-205 49-82 (106)
18 3f2k_A Histone-lysine N-methyl 29.4 1.5E+02 0.0052 28.4 8.3 62 375-439 65-134 (226)
19 2bw3_A Transposase; DNA recomb 29.1 1.9E+02 0.0064 31.7 10.0 70 394-467 130-201 (534)
20 1a6b_B Momulv, zinc finger pro 28.7 29 0.00098 24.1 2.0 15 720-734 9-23 (40)
21 1bco_A MUA domain II, bacterio 28.6 1.1E+02 0.0038 31.2 7.6 72 365-441 16-95 (327)
22 1u6p_A GAG polyprotein; MLV, A 27.4 43 0.0015 25.0 2.9 16 719-734 21-36 (56)
23 1fme_A FSD-EY peptide; beta-BE 26.2 47 0.0016 20.1 2.2 19 172-190 7-25 (28)
24 1nc8_A Nucleocapsid protein; H 26.1 25 0.00087 22.3 1.2 14 721-734 6-19 (29)
25 2fcj_A Small toprim domain pro 25.1 79 0.0027 27.6 4.6 42 415-459 41-85 (119)
26 2nrr_A Uvrabc system protein C 22.1 1.4E+02 0.0046 27.5 5.7 64 366-449 37-100 (159)
27 2kxh_B Peptide of FAR upstream 21.0 43 0.0015 21.5 1.5 18 14-31 12-29 (31)
28 1dsq_A Nucleic acid binding pr 20.9 34 0.0012 21.1 1.0 13 722-734 3-15 (26)
29 3av9_A Integrase, IN; protein- 20.8 1.7E+02 0.0059 26.7 6.6 67 364-442 28-94 (183)
No 1
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=91.28 E-value=0.27 Score=39.69 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.8
Q ss_pred eEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767 206 HVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP 246 (737)
Q Consensus 206 ~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~ 246 (737)
-|-.++|+..+|+++-.+.+..++....++++..+|||+.+
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 46679999999999999988877777888999999999875
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=90.98 E-value=0.25 Score=39.77 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=36.2
Q ss_pred eEEEEEEeeCCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767 206 HVVCYECSDLRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP 246 (737)
Q Consensus 206 ~r~~~~C~~~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~ 246 (737)
-|-.++|+..||+++-.+.+..++....++++..+|||+.+
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 46679999999999999998877788889999999999875
No 3
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=86.46 E-value=19 Score=37.16 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCcCceeEEEEeecCCCceEEEEEEEee---ccchhhHHHHHHHHHHHcc--cCC----CCCEEEEccCcc
Q 045767 377 NPYKSVMLVAAGLDGNNGILPVAFCEVD---VEDLESWVYFLKNINNALR--LEN----GKGICILGDGDN 438 (737)
Q Consensus 377 ~~y~~~ll~~~g~d~~~~~~plafal~~---~E~~es~~wfl~~l~~~~~--~~~----~~p~~iitD~~~ 438 (737)
..+++.++++.+++..| .+++.++. .-+.+.|.-+|+.+...+. .+. ..+++|+.|...
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34566777777888777 56777776 5677888888887655542 121 347899999865
No 4
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=69.49 E-value=5.5 Score=32.75 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=32.7
Q ss_pred CceEEEEeecCeEEEEEEee---CCCceEEEEEEcCCCceEEEeeeCCCcccCCC
Q 045767 195 GFKLCVMENRSHVVCYECSD---LRCDWVIQAGRVSDGTTFIVTDFMPQHTCIRP 246 (737)
Q Consensus 195 gf~~~~~kS~~~r~~~~C~~---~gCpwri~a~~~~~~~~~~I~~~~~~HnC~~~ 246 (737)
||.|...+....+....|.. .+|+++|.... +. |. ....|||++.
T Consensus 27 Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~----~~--~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 27 SFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG----HR--IM-VMRSHCHQPD 74 (87)
T ss_dssp TEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET----TE--EE-ECSCCSSCCC
T ss_pred CEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC----CC--EE-CCCCcCCCCc
Confidence 67777777777777899986 58999988753 22 22 4567999875
No 5
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=68.17 E-value=22 Score=32.07 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=44.4
Q ss_pred ccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchH
Q 045767 365 RGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGI 440 (737)
Q Consensus 365 ~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l 440 (737)
..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+.-.-+|..+....+ +.+|.||+....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f 72 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNF 72 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhh
Confidence 35789999998643 5677778766654 56655 45677776666666666652 368999998764
No 6
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=51.06 E-value=41 Score=29.50 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=45.6
Q ss_pred cEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHH
Q 045767 366 GILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDY 442 (737)
Q Consensus 366 ~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 442 (737)
.++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+.... + |..|.||+......
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C---CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C---CcEEecCCchHhhH
Confidence 5788999988432 5666777766554 56555 4777777777776666665 2 89999999987654
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=50.22 E-value=12 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 045767 693 PMIHSPKAVSAKGSNEIVP 711 (737)
Q Consensus 693 P~~~~~~GRpkk~R~~~~~ 711 (737)
|..+|++||||-...++..
T Consensus 2 ptpKrpRgRpkGSKNk~~~ 20 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKGAA 20 (26)
T ss_dssp CSCCCCSSCCTTCCCCSCC
T ss_pred CCCcCCCCCcCcccccCcc
Confidence 4558899999876655544
No 8
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=45.58 E-value=69 Score=30.24 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=40.8
Q ss_pred cEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchH
Q 045767 366 GILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGI 440 (737)
Q Consensus 366 ~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l 440 (737)
.++.+|-|+..++ +.++.+|.... ++.++.+- +++.+...-+|..+.... + .| .|.||+....
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~-~~~~~~~~~~l~~~~~~~--g--~~-~i~sDnG~~F 122 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIP-QESGRQTALFLLKLASRW--P--IT-HLHTDNGANF 122 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEES-SCCHHHHHHHHHHHHTTS--C--CS-EEEECCCTTT
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeC-CcchHHHHHHHHHHHHHc--C--CC-EEEeCCCchh
Confidence 4788898888543 35666777666 56666554 466666666665554444 2 24 4999998764
No 9
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=44.04 E-value=46 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCccchhhhhhhhheecc-C-CCCCHHHHHHHHHHHh-CCCCChhHHH
Q 045767 250 FQPQSKWISAIYLHRWKL-Q-PKVSTVEIRDEIEATY-GVVCPEGKLL 294 (737)
Q Consensus 250 h~~ss~~ia~~~~~~l~~-~-~~~~~~~I~~~l~~~~-g~~~s~~~~~ 294 (737)
..++-.-|...+.++|++ + .+++.+.|...|.+.| |+.++..+.+
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~ 57 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDF 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHH
Confidence 367888888889998886 3 4789999999999999 9999966544
No 10
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=37.10 E-value=69 Score=31.02 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=37.8
Q ss_pred cEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHH
Q 045767 366 GILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGID 441 (737)
Q Consensus 366 ~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~ 441 (737)
.++.+|.|+..++ +.++.+|.... +++++.+- .++.....-++..+.... ++.+|.||......
T Consensus 10 ~~w~~D~t~~~g~-----~~l~~vD~~Sr-~i~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEGK-----VILVAVHVASG-YIEAEVIP-AETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETTE-----EEEEEECTTTC-CEEEECCS-SSSTTHHHHHHHHHHHHS-----CCCEEEECCCHHHH
T ss_pred CEEEEeccccCCe-----EEEEEEECCCC-eEEEEEeC-CCCHHHHHHHHHHHHHhc-----CCcEEEecCcHHHH
Confidence 4789999998332 23344465444 45666554 455544444444444333 25899999988754
No 11
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.06 E-value=14 Score=27.61 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=13.3
Q ss_pred cccccccccCccCcce
Q 045767 719 ANYSHSATNNQQVHIV 734 (737)
Q Consensus 719 ~~~~~C~~C~~~gHn~ 734 (737)
...+.|=+|++.||.+
T Consensus 5 p~~~~C~kCGk~GH~~ 20 (55)
T 2ysa_A 5 SSGYTCFRCGKPGHYI 20 (55)
T ss_dssp SSSCCCTTTCCTTSCG
T ss_pred CCCCccccCCCcCccc
Confidence 3456899999999976
No 12
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=33.05 E-value=62 Score=27.66 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=26.0
Q ss_pred ccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeec
Q 045767 169 MVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENR 204 (737)
Q Consensus 169 ~~~~vG~~F~s~~e~~~av~~yAi~~gf~~~~~kS~ 204 (737)
+.-.+.+.|+|+|++ ..||.++|..|.|..-.
T Consensus 58 ~~~qv~L~F~skE~A----iayAek~G~~y~V~ep~ 89 (108)
T 2lju_A 58 TKQQVCLSFTTRELA----IAYAVAHKIDYTVLQDN 89 (108)
T ss_dssp CCCCSCEEESSHHHH----HHHHHHTTCEEEEECSS
T ss_pred ccccceEecCCHHHH----HHHHHHcCCEEEEecCC
Confidence 445678999999998 46899999999987543
No 13
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=32.56 E-value=1.2e+02 Score=26.92 Aligned_cols=71 Identities=13% Similarity=-0.080 Sum_probs=46.7
Q ss_pred ccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHH
Q 045767 365 RGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDY 442 (737)
Q Consensus 365 ~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 442 (737)
..++.+|-|+.... +|..+.++.+|...+. ++++.+- +.+.+.-.-+|..+.... ..|..|.||+......
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~----g~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHH----CCCeEEEeCCchhhhh
Confidence 35788898886543 3446667778876544 4666665 666666555666555555 2366999999987654
No 14
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=31.59 E-value=90 Score=30.21 Aligned_cols=71 Identities=11% Similarity=-0.112 Sum_probs=48.8
Q ss_pred ccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHH
Q 045767 365 RGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDY 442 (737)
Q Consensus 365 ~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 442 (737)
..++.+|.|+.... ++-.+.++.+|.... +++++.+- +++.+.-.-+|..+....+ .|.+|.||+......
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHHS
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCcccc
Confidence 35789999987643 334566677776554 45677765 7777777777776666662 377999999988644
No 15
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=31.56 E-value=21 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=13.3
Q ss_pred CcccccCCcccCCCC
Q 045767 623 AMSCSCGLWQISGIP 637 (737)
Q Consensus 623 ~~tCsC~~~~~~GiP 637 (737)
...|+|+.|...|.|
T Consensus 21 ~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKP 35 (42)
T ss_dssp TSSBTTTTBCCCCCC
T ss_pred CceeccccccCCCCc
Confidence 567999999999987
No 16
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=30.70 E-value=1.2e+02 Score=28.50 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=44.5
Q ss_pred cEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHH
Q 045767 366 GILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYA 443 (737)
Q Consensus 366 ~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~A 443 (737)
.++.+|-|+..++ +.++.+|...... .++. +.+.+.+...-+|..+.... + |.+|.||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~--g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMF--A---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHH--C---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHh--C---CcEEEeCCCchhhhH
Confidence 5778898876543 5667777766655 5555 45566666666666666655 2 889999999876543
No 17
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=30.54 E-value=41 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=27.2
Q ss_pred CccccCCcEeCCHHHHHHHHHHHHHHcCceEEEEeecC
Q 045767 168 KMVLYQGQRFRDVGEFRKAVQVFAVREGFKLCVMENRS 205 (737)
Q Consensus 168 ~~~~~vG~~F~s~~e~~~av~~yAi~~gf~~~~~kS~~ 205 (737)
++.-.+.+.|+|+|++ ..||.++|.+|.|..-..
T Consensus 49 D~~~qv~L~F~skE~A----iayAek~G~~y~V~ep~~ 82 (106)
T 2jya_A 49 DMKQQVKLTFETQEQA----EAYAQRKGIEYRVILPKE 82 (106)
T ss_dssp CSEEEEEEEESSHHHH----HHHHHHHTCEEEECCCTT
T ss_pred CccccceEecCCHHHH----HHHHHHcCCEEEEeCCCc
Confidence 3555678999999998 468999999999976543
No 18
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=29.44 E-value=1.5e+02 Score=28.41 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred ecCCcCceeEEEEeecCCCceEEEEEEEee---ccchhhHHHHHHHHHHHcc-----cCCCCCEEEEccCcch
Q 045767 375 MNNPYKSVMLVAAGLDGNNGILPVAFCEVD---VEDLESWVYFLKNINNALR-----LENGKGICILGDGDNG 439 (737)
Q Consensus 375 ~~~~y~~~ll~~~g~d~~~~~~plafal~~---~E~~es~~wfl~~l~~~~~-----~~~~~p~~iitD~~~~ 439 (737)
.++++++.+++..+.+.+|.+. +.+++ .-|.+.|.-+|+.+...+. +....+.+++.|....
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~~---~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~ 134 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLIH---YSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARP 134 (226)
T ss_dssp ----CCCEEEEEEEEETTEEEE---EEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHH
T ss_pred ccccCCcceEEEEEeecCCcEE---EEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCcc
Confidence 4566778899999998888664 44553 5577888888876644332 1234577889998653
No 19
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=29.11 E-value=1.9e+02 Score=31.68 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred ceEEEEEEEeec--cchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHHHhhccccceecchhHHHHHHHHh
Q 045767 394 GILPVAFCEVDV--EDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVEEFLPEAAYRQCCHKVFTEMVKR 467 (737)
Q Consensus 394 ~~~plafal~~~--E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~ 467 (737)
+..+|+|.-+.. .+.++..-.+..+.+..++....-+.++||....+..|+... .|..|..|...-+.+.
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 345677766663 455665555555555554333346778999999888887653 5889999998876553
No 20
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=28.71 E-value=29 Score=24.08 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=12.6
Q ss_pred ccccccccCccCcce
Q 045767 720 NYSHSATNNQQVHIV 734 (737)
Q Consensus 720 ~~~~C~~C~~~gHn~ 734 (737)
....|=.|++.||..
T Consensus 9 ~~~~C~~Cgk~GH~a 23 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWA 23 (40)
T ss_dssp CSSSCSSSCCTTCCT
T ss_pred CCCeeeECCCCCcch
Confidence 456999999999975
No 21
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=28.61 E-value=1.1e+02 Score=31.24 Aligned_cols=72 Identities=13% Similarity=-0.071 Sum_probs=48.7
Q ss_pred ccEEEecCeeecCC----cC--ceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCE--EEEccC
Q 045767 365 RGILAVDGWKMNNP----YK--SVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGI--CILGDG 436 (737)
Q Consensus 365 ~~vi~iD~T~~~~~----y~--~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~--~iitD~ 436 (737)
..++.+|+|++... .+ +...+++.+|.... .++|+.+...++.++..-.|.......+ .|. .|.+|.
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G----~P~~~~i~sDn 90 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG----IPEDFHITIDN 90 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC----EESSCEEECCC
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC----CCCCcEEEeeC
Confidence 45888888876432 12 13456666776555 4589999888888877777766655552 355 999999
Q ss_pred cchHH
Q 045767 437 DNGID 441 (737)
Q Consensus 437 ~~~l~ 441 (737)
.....
T Consensus 91 G~~f~ 95 (327)
T 1bco_A 91 TRGAA 95 (327)
T ss_dssp TTSTT
T ss_pred chhhc
Confidence 87653
No 22
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=27.40 E-value=43 Score=25.02 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=13.1
Q ss_pred cccccccccCccCcce
Q 045767 719 ANYSHSATNNQQVHIV 734 (737)
Q Consensus 719 ~~~~~C~~C~~~gHn~ 734 (737)
.....|=.|++.||..
T Consensus 21 ~~~~~C~~Cge~GH~a 36 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWA 36 (56)
T ss_dssp CCTTBCSSSCCBSSCG
T ss_pred CCCCcceeCCCCCccc
Confidence 4456899999999975
No 23
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=26.20 E-value=47 Score=20.13 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=16.8
Q ss_pred cCCcEeCCHHHHHHHHHHH
Q 045767 172 YQGQRFRDVGEFRKAVQVF 190 (737)
Q Consensus 172 ~vG~~F~s~~e~~~av~~y 190 (737)
..|.+|.+..|+++++..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 5799999999999999765
No 24
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=26.09 E-value=25 Score=22.26 Aligned_cols=14 Identities=7% Similarity=-0.057 Sum_probs=11.8
Q ss_pred cccccccCccCcce
Q 045767 721 YSHSATNNQQVHIV 734 (737)
Q Consensus 721 ~~~C~~C~~~gHn~ 734 (737)
...|-.|++.||..
T Consensus 6 ~~~C~nCgk~GH~a 19 (29)
T 1nc8_A 6 VIRCWNCGKEGHSA 19 (29)
T ss_dssp CCBCTTTSCBSSCG
T ss_pred CCEEEECCccccCH
Confidence 35799999999975
No 25
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=25.13 E-value=79 Score=27.56 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=32.9
Q ss_pred HHHHHHHcccCCCCCEEEEccCcch---HHHHHHhhccccceecchhH
Q 045767 415 LKNINNALRLENGKGICILGDGDNG---IDYAVEEFLPEAAYRQCCHK 459 (737)
Q Consensus 415 l~~l~~~~~~~~~~p~~iitD~~~~---l~~Ai~~vfP~a~h~~C~~H 459 (737)
++.++... ....+.|+||.+.+ |.+-|.+.||++.|.+-...
T Consensus 41 l~~I~~~~---~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~ 85 (119)
T 2fcj_A 41 LEELADEL---EGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRA 85 (119)
T ss_dssp HHHHHHHT---TTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTT
T ss_pred HHHHHHHh---cCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCC
Confidence 44555554 57889999999975 88889999999999886554
No 26
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.13 E-value=1.4e+02 Score=27.46 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=45.6
Q ss_pred cEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHHHHH
Q 045767 366 GILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDYAVE 445 (737)
Q Consensus 366 ~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~ 445 (737)
=|++.||-..+..|+- |-|-+ +..+.|.-+-+.+..... ....|-.|+.|+.+|-.+|..
T Consensus 37 mVVf~~g~p~K~~YRr------------------f~I~~-~g~DDya~M~Evl~RR~~-r~~~PDLilIDGGkgQl~aA~ 96 (159)
T 2nrr_A 37 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYS-KHPLPNLLFVDGGIGQVNAAI 96 (159)
T ss_dssp EEEEETTEECGGGCEE------------------EEC------CHHHHHHHHHHHHHT-TSCCCSEEEESSCHHHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eecCC-CCCCHHHHHHHHHHHHhc-cCCCCCEEEEeCCHHHHHHHH
Confidence 3788899888888874 22222 234788888888888873 124688999999999999999
Q ss_pred hhcc
Q 045767 446 EFLP 449 (737)
Q Consensus 446 ~vfP 449 (737)
+|+-
T Consensus 97 ~vl~ 100 (159)
T 2nrr_A 97 EALK 100 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 27
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=21.04 E-value=43 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.3
Q ss_pred chhhhhHhhhhccCCCCc
Q 045767 14 GVVQRSRQMRQNYSGPTN 31 (737)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (737)
--+||.||+-...+|+.+
T Consensus 12 dA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 12 DALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 358999999999998875
No 28
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=20.89 E-value=34 Score=21.07 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=11.0
Q ss_pred ccccccCccCcce
Q 045767 722 SHSATNNQQVHIV 734 (737)
Q Consensus 722 ~~C~~C~~~gHn~ 734 (737)
..|=.|++.||..
T Consensus 3 ~~Cf~CG~~GH~a 15 (26)
T 1dsq_A 3 PVCFSCGKTGHIK 15 (26)
T ss_dssp CBCTTTCCBSSCT
T ss_pred CeeEeCCCCCccc
Confidence 3799999999975
No 29
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=20.75 E-value=1.7e+02 Score=26.66 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=39.8
Q ss_pred CccEEEecCeeecCCcCceeEEEEeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHcccCCCCCEEEEccCcchHHH
Q 045767 364 CRGILAVDGWKMNNPYKSVMLVAAGLDGNNGILPVAFCEVDVEDLESWVYFLKNINNALRLENGKGICILGDGDNGIDY 442 (737)
Q Consensus 364 ~~~vi~iD~T~~~~~y~~~ll~~~g~d~~~~~~plafal~~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~ 442 (737)
-..++.+|.|+..++| + ++.+|...+.. +|+.+- +.+.+...-++..+.... ++.+|.||+.....+
T Consensus 28 p~~~w~~D~~~~~g~~---~--l~~vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---I--LVAVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW-----PVKTVHTDNGSNFTS 94 (183)
T ss_dssp CTTEEEEEEEEETTEE---E--EEEEETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHS-----CCCEEECSSHHHHHC
T ss_pred CCCEEEEeccccCCcE---E--EEEEECCCCCE-EEEEeC-CccchHHHHHHHHHHHHc-----CCcEEEecCchhcch
Confidence 3457889988873322 3 34447655544 666554 455555444444444444 238999999887643
Done!