Query 045773
Match_columns 303
No_of_seqs 169 out of 266
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 1.5E-88 3.3E-93 617.2 21.6 212 84-299 2-216 (216)
2 KOG0022 Alcohol dehydrogenase, 53.9 10 0.00022 37.8 2.6 21 252-272 38-58 (375)
3 PF06890 Phage_Mu_Gp45: Bacter 29.9 1.1E+02 0.0025 27.2 5.2 53 233-300 43-95 (162)
4 COG1062 AdhC Zn-dependent alco 17.4 1.2E+02 0.0027 30.5 3.1 33 235-267 14-48 (366)
5 smart00167 VPS9 Domain present 17.4 37 0.00081 28.4 -0.4 29 157-185 80-108 (117)
6 PF11834 DUF3354: Domain of un 17.2 2.3E+02 0.005 21.8 4.0 37 166-209 25-62 (69)
7 COG4384 Mu-like prophage prote 17.1 1.5E+02 0.0032 27.6 3.3 53 219-287 53-105 (203)
8 PF07792 Afi1: Docking domain 16.9 1.2E+02 0.0025 26.6 2.5 38 227-277 100-137 (145)
9 PF11323 DUF3125: Protein of u 16.4 84 0.0018 23.1 1.3 32 264-298 19-50 (50)
10 COG1486 CelF Alpha-galactosida 16.4 63 0.0014 33.3 0.9 44 252-298 162-205 (442)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=1.5e-88 Score=617.19 Aligned_cols=212 Identities=42% Similarity=0.753 Sum_probs=201.7
Q ss_pred cccccccCCCCccccCCCC-CCCCCCCCCCCccccCcCCCCcccHHHHHHHhCCCCCchHHHHHHHHHHHhccCCCCCCc
Q 045773 84 KFFRESMLKNGTLMPMPDI-RDRMPRRSLLPRSIVSNLPFTSSKLNQLKEIFHASDNSTMESIIKDALSDCERAPSKGET 162 (303)
Q Consensus 84 ~FF~e~dL~~G~~m~l~~~-~d~~~~~~FLPr~vA~siPFSs~~l~~iL~~F~i~~~S~~A~~m~~Tl~~CE~~~~~GE~ 162 (303)
+||+|+||+||++|+|+|. .+..+.++||||++|++||||+++|++||++|+|+++|+||++|++||++||.+|++||+
T Consensus 2 ~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE~ 81 (216)
T PF03181_consen 2 LFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGET 81 (216)
T ss_pred cccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCcC
Confidence 6999999999999999984 344467999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHhhcCC-ceeEEeeeccc-CCcceEEEeeeeeecCCCccceeeecccCCceeeeEeeeeCceeEEE
Q 045773 163 KRCVGSAEDMIDFATSVLGN-NVALHTTENAK-GSKQDIMIGTVKGINGGEVTKSVSCHQSLYPYLLYYCHSVPEVRVYE 240 (303)
Q Consensus 163 K~CaTSLESMvdFa~S~LG~-~v~~~st~~~~-~s~~~~~v~~V~~i~g~~~~k~V~CH~~~yPYaVyyCH~v~~trvY~ 240 (303)
|+||||||||+||++|+||+ ++++++|+... ...|+|+|++|++|.+ .+++|+||+|+|||+|||||.+++||+|+
T Consensus 82 k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~~v~~i~~--~~~~V~CH~~~yPYaVyyCH~~~~t~~y~ 159 (216)
T PF03181_consen 82 KYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVEGVKKIGG--GDKSVVCHKMPYPYAVYYCHSIPPTRVYM 159 (216)
T ss_pred ccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEEeeeeecC--CCceEEEcccCCceeEEEeeecCceeEEE
Confidence 99999999999999999998 79999998877 4578999999999976 37999999999999999999999999999
Q ss_pred EEeecCcCcccceEEEEEeecCCCCCCCChhHHHhhCCCCCCCceeeEEeCCceEEeec
Q 045773 241 ADILEPKTMAKINHGVAICHLDTSSWSATHEAFLTLGSSPGRIEVCHWIFENDLTWTIA 299 (303)
Q Consensus 241 V~L~~~d~~g~~~~avAVCH~DTS~W~p~H~aF~~L~~kPG~~~VCHfi~~~~ivWvp~ 299 (303)
|+|+|+| |++++||||||+|||.|||+|+||++||+|||++|||||+++|+|+|+|+
T Consensus 160 V~l~g~d--g~~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 160 VPLVGED--GTKVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEeecC--CceEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 9999999 78999999999999999999999999999999999999999999999986
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.93 E-value=10 Score=37.81 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=16.8
Q ss_pred ceEEEEEeecCCCCCCCChhH
Q 045773 252 INHGVAICHLDTSSWSATHEA 272 (303)
Q Consensus 252 ~~~avAVCH~DTS~W~p~H~a 272 (303)
++.+.+|||+|-..|+-.++.
T Consensus 38 KI~~t~vCHTD~~~~~g~~~~ 58 (375)
T KOG0022|consen 38 KILATGVCHTDAYVWSGKDPE 58 (375)
T ss_pred EEEEEeeccccceeecCCCcc
Confidence 467889999999999965433
No 3
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=29.93 E-value=1.1e+02 Score=27.18 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=40.3
Q ss_pred eCceeEEEEEeecCcCcccceEEEEEeecCCCCCCCChhHHHhhCCCCCCCceeeEEeCCceEEeecC
Q 045773 233 VPEVRVYEADILEPKTMAKINHGVAICHLDTSSWSATHEAFLTLGSSPGRIEVCHWIFENDLTWTIAD 300 (303)
Q Consensus 233 v~~trvY~V~L~~~d~~g~~~~avAVCH~DTS~W~p~H~aF~~L~~kPG~~~VCHfi~~~~ivWvp~~ 300 (303)
++.+.++.+.|- |.+.++|+||-- |..+++-+++||+ ||=|=.+++.||+..+
T Consensus 43 p~Ga~~vvl~lG-----G~rs~~Vvia~~--------d~~yR~~~L~~GE--valY~~~G~~I~L~~~ 95 (162)
T PF06890_consen 43 PPGAEAVVLFLG-----GDRSHGVVIAVE--------DRRYRPKGLKPGE--VALYDDEGQKIHLKRD 95 (162)
T ss_pred CCCCeEEEEEec-----cCCcceEEEEeC--------CccccccCCCCCc--EEEEcCCCCEEEEEec
Confidence 347888888886 566778888865 4567777789996 7777789999998753
No 4
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=17.43 E-value=1.2e+02 Score=30.53 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=22.8
Q ss_pred ceeEEEEEeecCcCccc--ceEEEEEeecCCCCCC
Q 045773 235 EVRVYEADILEPKTMAK--INHGVAICHLDTSSWS 267 (303)
Q Consensus 235 ~trvY~V~L~~~d~~g~--~~~avAVCH~DTS~W~ 267 (303)
+-.+-+|+|..+..+.- +++|-+|||+|-..-+
T Consensus 14 Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~ 48 (366)
T COG1062 14 PLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLS 48 (366)
T ss_pred CeEEEEEecCCCCCCeEEEEEEEeeccccchhhhc
Confidence 44566777776654232 6789999999976654
No 5
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=17.40 E-value=37 Score=28.44 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=24.8
Q ss_pred CCCCCcccccCChHHHHHHHHhhcCCcee
Q 045773 157 PSKGETKRCVGSAEDMIDFATSVLGNNVA 185 (303)
Q Consensus 157 ~~~GE~K~CaTSLESMvdFa~S~LG~~v~ 185 (303)
...||.-||.|++|+-++|..+..+.+..
T Consensus 80 ~l~gE~gY~lT~l~aAv~fi~~l~~~~l~ 108 (117)
T smart00167 80 LLTGEGGYYLTSLSAALALIKGLTEAHAL 108 (117)
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCHHhCC
Confidence 46899999999999999999988765543
No 6
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=17.23 E-value=2.3e+02 Score=21.81 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=24.5
Q ss_pred cCChHHHHHHHHhhcCCcee-EEeeecccCCcceEEEeeeeeecC
Q 045773 166 VGSAEDMIDFATSVLGNNVA-LHTTENAKGSKQDIMIGTVKGING 209 (303)
Q Consensus 166 aTSLESMvdFa~S~LG~~v~-~~st~~~~~s~~~~~v~~V~~i~g 209 (303)
..|+|.+++-|..+||-... +++.+. -.|.+|.-|..
T Consensus 25 P~SleeLl~ia~~kfg~~~~~v~~~dg-------aeIdDI~~IRD 62 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFSATKVLNEDG-------AEIDDIDVIRD 62 (69)
T ss_pred CccHHHHHHHHHHHhCCCceEEEcCCC-------CEEeEEEEEEc
Confidence 46999999999999997533 333322 22556666643
No 7
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=17.12 E-value=1.5e+02 Score=27.56 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=39.7
Q ss_pred cccCCceeeeEeeeeCceeEEEEEeecCcCcccceEEEEEeecCCCCCCCChhHHHhhCCCCCCCceee
Q 045773 219 HQSLYPYLLYYCHSVPEVRVYEADILEPKTMAKINHGVAICHLDTSSWSATHEAFLTLGSSPGRIEVCH 287 (303)
Q Consensus 219 H~~~yPYaVyyCH~v~~trvY~V~L~~~d~~g~~~~avAVCH~DTS~W~p~H~aF~~L~~kPG~~~VCH 287 (303)
|.+.|- |+-+-.....++-|+|- |++-++|+||-. |++++.-|+++|+.-|-|
T Consensus 53 r~q~yG---f~S~ppaGse~vvv~lG-----G~rShgviv~~~--------~~syR~~GL~aGeT~iY~ 105 (203)
T COG4384 53 RLQEYG---FASVPPAGSEAVVVPLG-----GKRSHGVIVVSQ--------HGSYRITGLKAGETVIYN 105 (203)
T ss_pred HHHhcC---cccCCCCCCeEEEEecC-----CccceeEEEEec--------CCccccccccCCceEEEe
Confidence 556665 34444557788888885 677899999965 778899999999987765
No 8
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=16.86 E-value=1.2e+02 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=23.1
Q ss_pred eeEeeeeCceeEEEEEeecCcCcccceEEEEEeecCCCCCCCChhHHHhhC
Q 045773 227 LYYCHSVPEVRVYEADILEPKTMAKINHGVAICHLDTSSWSATHEAFLTLG 277 (303)
Q Consensus 227 VyyCH~v~~trvY~V~L~~~d~~g~~~~avAVCH~DTS~W~p~H~aF~~L~ 277 (303)
.+||..+-.++--. .. ..|.+++|+|||=. |+.|..++
T Consensus 100 ~ly~ln~v~~k~D~----~~-rRGA~vKa~aI~T~--------~~~~~ifK 137 (145)
T PF07792_consen 100 PLYVLNLVNTKHDK----TV-RRGAVVKAMAICTR--------HPFFHIFK 137 (145)
T ss_pred ceEEEEeeccccCc----cc-ccccceeEEEEEcc--------cHHHHHHh
Confidence 35666664443211 11 23789999999954 77777663
No 9
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=16.42 E-value=84 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=26.9
Q ss_pred CCCCCChhHHHhhCCCCCCCceeeEEeCCceEEee
Q 045773 264 SSWSATHEAFLTLGSSPGRIEVCHWIFENDLTWTI 298 (303)
Q Consensus 264 S~W~p~H~aF~~L~~kPG~~~VCHfi~~~~ivWvp 298 (303)
..|..+ |-+||-.|--+--|++-..-.++|.|
T Consensus 19 ~~~e~~---fS~Lga~~q~a~yckl~f~~~L~~~P 50 (50)
T PF11323_consen 19 RNWESN---FSMLGAHFQSANYCKLNFPRLLCWGP 50 (50)
T ss_pred eeeccc---chhhccccceeeeEEecceeEEEecC
Confidence 467764 88999888888899999999999986
No 10
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=16.37 E-value=63 Score=33.32 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEEEeecCCCCCCCChhHHHhhCCCCCCCceeeEEeCCceEEee
Q 045773 252 INHGVAICHLDTSSWSATHEAFLTLGSSPGRIEVCHWIFENDLTWTI 298 (303)
Q Consensus 252 ~~~avAVCH~DTS~W~p~H~aF~~L~~kPG~~~VCHfi~~~~ivWvp 298 (303)
.++.|.+||.=-. -..-..++|+++|.+.=-+-+..-||++|..
T Consensus 162 ~~K~VGlCh~~~g---~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~ 205 (442)
T COG1486 162 KIKIVGLCHGPIG---IAMELAEVLGLEPREDLRYRVAGLNHMVWIL 205 (442)
T ss_pred CCcEEeeCCchHH---HHHHHHHHhCCCchhceeEEEeechhhhhhh
Confidence 4689999998211 1234678999998666689999999999964
Done!