Query 045773
Match_columns 303
No_of_seqs 169 out of 266
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 31.6 31 0.001 27.5 2.8 34 126-161 31-65 (118)
2 1obb_A Maltase, alpha-glucosid 16.0 60 0.0021 32.0 2.1 42 252-298 167-208 (480)
3 3hgl_A Effector protein hopab2 12.6 2.4E+02 0.0083 21.6 4.1 37 119-155 38-80 (85)
4 3tjy_A Effector protein hopab3 12.0 2.6E+02 0.0088 21.8 4.1 37 119-155 36-78 (94)
5 1r4p_B Sltii B subunit, shiga- 11.8 53 0.0018 24.1 0.2 14 51-64 3-16 (70)
6 2liy_A Epidermal patterning fa 11.5 2.8E+02 0.0095 18.8 3.7 27 235-261 19-45 (45)
7 3zqu_A Probable aromatic acid 10.8 1.4E+02 0.0048 26.1 2.7 24 156-180 163-186 (209)
8 2lde_A Sarafotoxin-I3; endothe 10.3 26 0.00089 21.5 -1.6 5 227-231 12-16 (26)
9 1c4q_A Protein (shiga-like tox 9.3 70 0.0024 23.4 0.1 30 50-79 3-34 (69)
10 4fur_A Urease subunit gamma 2; 9.1 1.5E+02 0.0052 23.7 2.0 95 110-220 6-101 (104)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=31.63 E-value=31 Score=27.46 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=27.2
Q ss_pred cHHHHHHHhCCCCCchHHHHHHHHH-HHhccCCCCCC
Q 045773 126 KLNQLKEIFHASDNSTMESIIKDAL-SDCERAPSKGE 161 (303)
Q Consensus 126 ~l~~iL~~F~i~~~S~~A~~m~~Tl-~~CE~~~~~GE 161 (303)
.|.+||+.|-|+. +-|-.|.+|| ..||+-|.+-|
T Consensus 31 sledilaqfeis~--~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 31 TLEDILAQFEISV--PSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CHHHHHHHHCCCH--HHHHHHHHHHHHHHHHCTTTEE
T ss_pred cHHHHHHHheecc--chHhHHHHHHHHHHhcCCchhh
Confidence 5789999999865 5567889999 57999877655
No 2
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=16.03 E-value=60 Score=31.97 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=32.8
Q ss_pred ceEEEEEeecCCCCCCCChhHHHhhCCCCCCCceeeEEeCCceEEee
Q 045773 252 INHGVAICHLDTSSWSATHEAFLTLGSSPGRIEVCHWIFENDLTWTI 298 (303)
Q Consensus 252 ~~~avAVCH~DTS~W~p~H~aF~~L~~kPG~~~VCHfi~~~~ivWvp 298 (303)
..+.+++||++-+ -.+.. +.||+.|.++ -.-.+.-||+.|..
T Consensus 167 ~~rviG~c~~~~~---~~~~l-~~lgv~~~~v-~~~v~GlNH~~w~~ 208 (480)
T 1obb_A 167 PIKAVGFCHGHYG---VMEIV-EKLGLEEEKV-DWQVAGVNHGIWLN 208 (480)
T ss_dssp CSEEEEECSGGGH---HHHHH-HHTTCCGGGE-EEEEEEETTEEEEE
T ss_pred CCcEEecCCCHHH---HHHHH-HHhCCCHHHc-eEEEEeecchhhhh
Confidence 4578999999886 35666 9999998765 34568889999983
No 3
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=12.62 E-value=2.4e+02 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=28.1
Q ss_pred cCCCCcccHHHHHHHh------CCCCCchHHHHHHHHHHHhcc
Q 045773 119 NLPFTSSKLNQLKEIF------HASDNSTMESIIKDALSDCER 155 (303)
Q Consensus 119 siPFSs~~l~~iL~~F------~i~~~S~~A~~m~~Tl~~CE~ 155 (303)
.+-||-....-+++.| +|..+|..|...+.+|+.-.+
T Consensus 38 ~valsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~alrr~v~ 80 (85)
T 3hgl_A 38 AVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH 80 (85)
T ss_dssp CCCCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHHHHHHH
Confidence 3446655666677776 899999999999999976544
No 4
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=11.97 E-value=2.6e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=29.4
Q ss_pred cCCCCcccHHHHHHHh------CCCCCchHHHHHHHHHHHhcc
Q 045773 119 NLPFTSSKLNQLKEIF------HASDNSTMESIIKDALSDCER 155 (303)
Q Consensus 119 siPFSs~~l~~iL~~F------~i~~~S~~A~~m~~Tl~~CE~ 155 (303)
.+-||--...-+|+.| +|..+|..|...+.+|+.-.+
T Consensus 36 ~valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrrav~ 78 (94)
T 3tjy_A 36 EMILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRADS 78 (94)
T ss_dssp CCCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHHHH
Confidence 3456666667777777 899999999999999977655
No 5
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=11.77 E-value=53 Score=24.14 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=9.4
Q ss_pred cccCceeeeeecCC
Q 045773 51 YAKSGVTFANYTEG 64 (303)
Q Consensus 51 y~k~~v~f~~y~~~ 64 (303)
-+|++|.|..|+..
T Consensus 3 cakgkiefskyned 16 (70)
T 1r4p_B 3 CAKGKIEFSKYNED 16 (70)
T ss_dssp EEEECEEEEEECTT
T ss_pred cccceEEEEEecCC
Confidence 35667777777654
No 6
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=11.50 E-value=2.8e+02 Score=18.82 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.2
Q ss_pred ceeEEEEEeecCcCcccceEEEEEeec
Q 045773 235 EVRVYEADILEPKTMAKINHGVAICHL 261 (303)
Q Consensus 235 ~trvY~V~L~~~d~~g~~~~avAVCH~ 261 (303)
.-++-+|++.+.|...+.-+...|||.
T Consensus 19 ~C~aeqvPvd~~dP~~SAYhY~CvChr 45 (45)
T 2liy_A 19 KCRAEQVPVEGNDPINSAYHYRCVCHR 45 (45)
T ss_dssp EEEEEEEESSCSSSCSCCEEEEEEEEC
T ss_pred ccceeeccccCCCcccchheeEeEecC
Confidence 456788999888855556677899993
No 7
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=10.83 E-value=1.4e+02 Score=26.12 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCCCCCcccccCChHHHHHHHHhhc
Q 045773 156 APSKGETKRCVGSAEDMIDFATSVL 180 (303)
Q Consensus 156 ~~~~GE~K~CaTSLESMvdFa~S~L 180 (303)
||..|. -.+..|+|+|+||++.+.
T Consensus 163 pp~~g~-ya~p~~iediv~~vv~r~ 186 (209)
T 3zqu_A 163 PAAPGF-YHQPQSVEDLVDFVVARI 186 (209)
T ss_dssp CSCCCC-TTCCCSHHHHHHHHHHHH
T ss_pred CCCccc-ccCCCCHHHHHHHHHHHH
Confidence 677776 568999999999998763
No 8
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=10.25 E-value=26 Score=21.50 Aligned_cols=5 Identities=40% Similarity=1.597 Sum_probs=0.0
Q ss_pred eeEee
Q 045773 227 LYYCH 231 (303)
Q Consensus 227 VyyCH 231 (303)
|||||
T Consensus 12 ~yfCh 16 (26)
T 2lde_A 12 MNFCH 16 (26)
T ss_dssp HHHHS
T ss_pred heeec
No 9
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=9.34 E-value=70 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred ccccCceeeeeecCCCCCCCCCCCccc--ccc
Q 045773 50 DYAKSGVTFANYTEGTPVPKPSSGSSV--NRW 79 (303)
Q Consensus 50 ~y~k~~v~f~~y~~~~~~~~~~~~~~~--~~~ 79 (303)
|-+|++|.|..|+...--...++|+.. |||
T Consensus 3 dcakgkiefskyne~~tftvkv~gkeywt~rw 34 (69)
T 1c4q_A 3 DCVTGKVEYTKYNDDDTFTVKVGDKELATNRA 34 (69)
T ss_dssp EEEEEEEEEEEECTTSCEEEEETTEEEEECCT
T ss_pred ccccceEEEEEecCCceEEEEecCeeeeeccc
No 10
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=9.09 E-value=1.5e+02 Score=23.67 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCccccCcCCCCcccHHHHHHHhCCCCCchHH-HHHHHHHHHhccCCCCCCcccccCChHHHHHHHHhhcCCceeEEe
Q 045773 110 SLLPRSIVSNLPFTSSKLNQLKEIFHASDNSTME-SIIKDALSDCERAPSKGETKRCVGSAEDMIDFATSVLGNNVALHT 188 (303)
Q Consensus 110 ~FLPr~vA~siPFSs~~l~~iL~~F~i~~~S~~A-~~m~~Tl~~CE~~~~~GE~K~CaTSLESMvdFa~S~LG~~v~~~s 188 (303)
.+.||..-.-+-|....|..=-.-=+++=|-++| ..|.+.+-+.-+..- |..++.+.....||++-+.
T Consensus 6 ~LtPrE~dkLli~~aa~lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~---------sVaelM~~g~~~L~~~dVm-- 74 (104)
T 4fur_A 6 HLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGK---------TVEEVMDGARSVLKADDVM-- 74 (104)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHTTTSCGGGBC--
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHhhhCCHHhcc--
Q ss_pred eecccCCcceEEEeeeeeecCCCccceeeecc
Q 045773 189 TENAKGSKQDIMIGTVKGINGGEVTKSVSCHQ 220 (303)
Q Consensus 189 t~~~~~s~~~~~v~~V~~i~g~~~~k~V~CH~ 220 (303)
+.+..--..+.|+..=. +++|-|++|.
T Consensus 75 -~GV~emi~~vqVEatFp----DGTkLVTVH~ 101 (104)
T 4fur_A 75 -DGVPDLLPLIQVEAVFS----DGSRLVSLHN 101 (104)
T ss_dssp -TTHHHHCSEEEEEEEET----TEEEEEEEES
T ss_pred -cCHHHHhcceeEEEEcC----CCCEEEeecC
Done!