BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045774
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 337 bits (863), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 159/263 (60%), Positives = 207/263 (78%), Gaps = 1/263 (0%)
Query: 11 LLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYD 70
+LEALNVRVVG G I+ +HGFG+DQS W ++P FT+ YRV+ +DL+C+GS +P +D
Sbjct: 6 ILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFD 65
Query: 71 FQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPR 130
F RY TLD YVDDLL+ +D+L I CA+VGHSVSAMIG++A+I RP LFS+LILIG SPR
Sbjct: 66 FNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPR 125
Query: 131 FTNDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRP 190
F ND +Y GG + +E+VF ME+NYE+WV GF P+A+GADVP A++EFSRTLF+MRP
Sbjct: 126 FLNDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVP-AAVREFSRTLFNMRP 184
Query: 191 DIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPT 250
DI+L V+RT F +DLR VLGLVRVP C+IQ++ D+SVP +VAEY+R HLGG T +E L T
Sbjct: 185 DISLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKT 244
Query: 251 HGHLPHVSSPAPVANAIQQLLRR 273
GHLP +S+PA +A +++ L R
Sbjct: 245 EGHLPQLSAPAQLAQFLRRALPR 267
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 336 bits (862), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 208/266 (78%), Gaps = 1/266 (0%)
Query: 8 GEFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
G LL+ LNVRVVG G+ ++V SHGFG+DQS WSRV+P TR +RV+ +DL+C+GS +P
Sbjct: 3 GAKLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPD 62
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
++DF+RY LD YVDDLL+ LDAL I RCAFVGHSVSAMIG+LA+I RP+LF++L+LIG
Sbjct: 63 HFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 122
Query: 128 SPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFS 187
SPRF ND +Y GG + +++VF M +NY +W G+ P+A+GADVP A+QEFSRTLF+
Sbjct: 123 SPRFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVP-AAVQEFSRTLFN 181
Query: 188 MRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
MRPDI+LHV +T F DLR VLG+VR P ++Q++ D+SVP +VA Y++ HLGG T +EF
Sbjct: 182 MRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEF 241
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRR 273
L T GHLPH+S+P+ +A +++ L R
Sbjct: 242 LQTEGHLPHLSAPSLLAQVLRRALAR 267
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 336 bits (862), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 208/266 (78%), Gaps = 1/266 (0%)
Query: 8 GEFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
G LL+ LNVRVVG G+ ++V SHGFG+DQS WSRV+P TR +RV+ +DL+C+GS +P
Sbjct: 1 GPKLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPD 60
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
++DF+RY LD YVDDLL+ LDAL I RCAFVGHSVSAMIG+LA+I RP+LF++L+LIG
Sbjct: 61 HFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 120
Query: 128 SPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFS 187
SPRF ND +Y GG + +++VF M +NY +W G+ P+A+GADVP A+QEFSRTLF+
Sbjct: 121 SPRFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVP-AAVQEFSRTLFN 179
Query: 188 MRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
MRPDI+LHV +T F DLR VLG+VR P ++Q++ D+SVP +VA Y++ HLGG T +EF
Sbjct: 180 MRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEF 239
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRR 273
L T GHLPH+S+P+ +A +++ L R
Sbjct: 240 LQTEGHLPHLSAPSLLAQVLRRALAR 265
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 330 bits (846), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 157/267 (58%), Positives = 206/267 (77%), Gaps = 1/267 (0%)
Query: 8 GEFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
G+ LL+ALNVRVVG G+ ++V +HGFG+DQS W+R++P F R YRV+ +DL+C+GS +P
Sbjct: 4 GQTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPD 63
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+DF+RY TLD YVDDLL LDAL ID CA+VGHSVSAMIG+LA+I RP LFS+LILIG
Sbjct: 64 FFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGA 123
Query: 128 SPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFS 187
SPRF ND +Y GG + +E+VF ME+NYE+WV GF P+A+GADVP A++EFSRTLF+
Sbjct: 124 SPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVP-AAVREFSRTLFN 182
Query: 188 MRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
MRPDI L V+RT F +D+R VLGLV+VP I Q++ D SVP +VA Y++ HLGG + +
Sbjct: 183 MRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHW 242
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRRR 274
L GHLPH+S+P +A +++ L R
Sbjct: 243 LNIEGHLPHLSAPTLLAQELRRALSHR 269
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 206/267 (77%), Gaps = 1/267 (0%)
Query: 8 GEFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
G+ LL+ALNVRVVG G+ ++V +HGFG+DQS W+R++P F R YRV+ +DL+C+GS +P
Sbjct: 4 GQTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPD 63
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+DF+RY TLD YVDDLL LDAL ID CA+VGH+VSAMIG+LA+I RP LFS+LILIG
Sbjct: 64 FFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGA 123
Query: 128 SPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFS 187
SPRF ND +Y GG + +E+VF ME+NYE+WV GF P+A+GADVP A++EFSRTLF+
Sbjct: 124 SPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVP-AAVREFSRTLFN 182
Query: 188 MRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
MRPDI L V+RT F +D+R VLGLV+VP I Q++ D SVP +VA Y++ HLGG + +
Sbjct: 183 MRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHW 242
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRRR 274
L GHLPH+S+P +A +++ L R
Sbjct: 243 LNIEGHLPHLSAPTLLAQELRRALSHR 269
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 280 bits (716), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 187/261 (71%)
Query: 13 EALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQ 72
EA NV+V+G G++ IV HGFG+DQSVW ++P YRV+ +D M +G+ +P +DF
Sbjct: 24 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 83
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
RY+ L+GY DL++ L+ L+I+ C FVGHSVSAMIG+LA+++RP+LFS++++I SPR+
Sbjct: 84 RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYV 143
Query: 133 NDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDI 192
ND +Y GG + + ++F + SNY++W GF P+A+G D+ +A+QEFSRTLF+MRPDI
Sbjct: 144 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 203
Query: 193 ALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHG 252
AL V +T F +D+R +L V VP I+QS DL+VP V+EY+ +LG +V+E +P+ G
Sbjct: 204 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 263
Query: 253 HLPHVSSPAPVANAIQQLLRR 273
HLP +SSP V I + +R
Sbjct: 264 HLPQLSSPDSVIPVILRHIRN 284
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 280 bits (715), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 187/261 (71%)
Query: 13 EALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQ 72
EA NV+V+G G++ IV HGFG+DQSVW ++P YRV+ +D M +G+ +P +DF
Sbjct: 6 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 65
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
RY+ L+GY DL++ L+ L+I+ C FVGHSVSAMIG+LA+++RP+LFS++++I SPR+
Sbjct: 66 RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYV 125
Query: 133 NDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDI 192
ND +Y GG + + ++F + SNY++W GF P+A+G D+ +A+QEFSRTLF+MRPDI
Sbjct: 126 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 185
Query: 193 ALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHG 252
AL V +T F +D+R +L V VP I+QS DL+VP V+EY+ +LG +V+E +P+ G
Sbjct: 186 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 245
Query: 253 HLPHVSSPAPVANAIQQLLRR 273
HLP +SSP V I + +R
Sbjct: 246 HLPQLSSPDSVIPVILRHIRN 266
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 187/261 (71%)
Query: 13 EALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQ 72
EA NV+V+G G++ IV HGFG+DQSVW ++P YRV+ +D M +G+ +P +DF
Sbjct: 8 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 67
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
RY+ L+GY DL++ L+ L+I+ C FVGHSVSAMIG+LA+++RP+LFS++++I SPR+
Sbjct: 68 RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYV 127
Query: 133 NDGNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDI 192
ND +Y GG + + ++F + SNY++W GF P+A+G D+ +A+QEFSRTLF+MRPDI
Sbjct: 128 NDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDI 187
Query: 193 ALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHG 252
AL V +T F +D+R +L V VP I+QS DL+VP V+EY+ +LG +V+E +P+ G
Sbjct: 188 ALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDG 247
Query: 253 HLPHVSSPAPVANAIQQLLRR 273
HLP +SSP V I + +R
Sbjct: 248 HLPQLSSPDSVIPVILRHIRN 268
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 146/264 (55%), Gaps = 4/264 (1%)
Query: 11 LLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYD 70
+L +V+V G G++ I+F+ GFG DQSVW+ V P+F +RVI FD + SG D YD
Sbjct: 7 ILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYD 66
Query: 71 FQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPR 130
RY TLDGY D+L +AL++ FVGHSV A+IG+LA+I RP LFS L+++G SP
Sbjct: 67 LNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPC 126
Query: 131 FTND-GNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGA-DVPDMALQEFSRTLFSM 188
+ ND Y GG + + + ME NY W F L D P++ +E S
Sbjct: 127 YLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIK-EELESRFCST 185
Query: 189 RPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFL 248
P IA A+ AF +D R L V VP I+Q + D+ P V +YM +HL + L+ +
Sbjct: 186 DPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSS-LKQM 244
Query: 249 PTHGHLPHVSSPAPVANAIQQLLR 272
GH PH+S P I L+
Sbjct: 245 EARGHCPHMSHPDETIQLIGDYLK 268
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 140 bits (354), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 2/244 (0%)
Query: 16 NVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYA 75
N+ + G G+ ++ +HGFG DQ+ W +P + + VI FD + SG D ++ +RY+
Sbjct: 20 NINITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESFSTKRYS 79
Query: 76 TLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTN-D 134
+L+GY D+ L AL++ + +GHSVS++I +A+ H + S + I SP F N
Sbjct: 80 SLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCFXNFP 139
Query: 135 GNYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDIAL 194
+Y+GG + +EE+ + NY W P+ GA + E S + + P +A
Sbjct: 140 PDYVGGFERDDLEELINLXDKNYIGWANYLAPLVXGASHSSELIGELSGSFCTTDPIVAK 199
Query: 195 HVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHGHL 254
A+ F +D R +L + P I QS+ D P V +Y ++ + LE + GH
Sbjct: 200 TFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENIPN-SQLELIQAEGHC 258
Query: 255 PHVS 258
H +
Sbjct: 259 LHXT 262
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 16 NVRVVGQGQSIIVFSHGFG---SDQSVWSRVIPSFTRAYRVISFDLMCSGSCD-PTNYDF 71
N VG+GQ +I+ HG G S + W IP+ ++ YRVI+ D++ G D P NY++
Sbjct: 18 NYHDVGEGQPVILI-HGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNY 76
Query: 72 QRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG-SPR 130
+ D +VD ++ +DALEI++ VG+S + + A+ R++L+G R
Sbjct: 77 SK----DSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTR 132
Query: 131 F--TNDGNYIGGIDPA 144
F T N + G P+
Sbjct: 133 FDVTEGLNAVWGYTPS 148
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 16 NVRVVGQGQSIIVFSHGFG---SDQSVWSRVIPSFTRAYRVISFDLMCSGSCD-PTNYDF 71
N VG+GQ +I+ HG G S + W IP+ ++ YRVI+ D++ G D P NY++
Sbjct: 18 NYHDVGEGQPVILI-HGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNY 76
Query: 72 QRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGS-PR 130
+ D +VD ++ +DALEI++ VG++ + + A+ R++L+G + R
Sbjct: 77 SK----DSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTR 132
Query: 131 F--TNDGNYIGGIDPA 144
F T N + G P+
Sbjct: 133 FDVTEGLNAVWGYTPS 148
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 110/271 (40%), Gaps = 35/271 (12%)
Query: 14 ALNVRVVGQGQS-IIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG--SCDPTNYD 70
+L R+ G + ++ S+ G+ W +P+ TR +RV+ +D G S P Y
Sbjct: 16 SLAYRLDGAAEKPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYT 75
Query: 71 FQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPR 130
R +D+L LDALE+ R F+G S+ ++G A+H P RL+L
Sbjct: 76 LARLG------EDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVL------ 123
Query: 131 FTNDGNYIGGIDPAHMEE---VFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFS 187
N ++G A +E + E E+ AGF LG P L+ +
Sbjct: 124 -ANTSAWLG--PAAQWDERIAAVLQAEDXSET-AAGF----LGNWFPPALLERAEPVVER 175
Query: 188 MRPDIAL---HVARTAFAA----DLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
R + H +FAA DLR L + P +I + D + E + +
Sbjct: 176 FRAXLXATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIA 235
Query: 241 GPTVLEFLPTHGHLPHVSSPAPVANAIQQLL 271
G ++ LP HL +V P A+ L
Sbjct: 236 GARLVT-LPAV-HLSNVEFPQAFEGAVLSFL 264
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 25/233 (10%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
IV S+ G+D S W+ + + ++ +RV+ +D G + + T++ D+L
Sbjct: 29 IVLSNSLGTDLSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPY----TIEQLTGDVLG 84
Query: 87 FLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNYIGGIDPAHM 146
D L+I R F G S + G+ A + R+ L + R IG +
Sbjct: 85 LXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAAR-------IGSPEVWVP 137
Query: 147 EEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDIALHVARTAFA---- 202
V R E + + +P AD E + + D+ +H + +A
Sbjct: 138 RAVKARTEGXH-ALADAVLPRWFTAD-----YXEREPVVLAXIRDVFVHTDKEGYASNCE 191
Query: 203 ----ADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTH 251
ADLR ++VP +I + DL+ PA + + + G +E +H
Sbjct: 192 AIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYVELDASH 244
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 104/267 (38%), Gaps = 31/267 (11%)
Query: 21 GQGQSIIVFSHGFGSDQSV--WSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLD 78
G+GQ +I+ G +S W VIP R YRVI+ D++ G + ++ T D
Sbjct: 34 GKGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEY----TQD 89
Query: 79 GYVDDLLSFLDALEID-RCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNY 137
+ L F+ A+ D + + VG+S+ GL ++ L + L+L+G +
Sbjct: 90 RRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSA--------- 140
Query: 138 IGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQE-FSRTLFSMRPDIALHV 196
G + H + R NY+ G V + + + + ++ D A
Sbjct: 141 -GLVVEIHED---LRPIINYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRK 196
Query: 197 ARTAFAADLRHVLGL---------VRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
A A +R GL V+VP ++Q D VP A Y L +
Sbjct: 197 AYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETA-YKFLDLIDDSWGYI 255
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRRR 274
+P GH + P ANA L R
Sbjct: 256 IPHCGHWAMIEHPEDFANATLSFLSLR 282
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 12 LEALNVRVVGQG----QSIIVFSHGFGSDQSVWSRVIPSFTRAY-RVISFDLMCSGSCDP 66
E L + V +G + + HG S ++ +++P FT A RV++ DL G D
Sbjct: 30 FEGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDK 89
Query: 67 TNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILI 125
D T + LL+FLDAL+++R V ++GL + RP L RLI++
Sbjct: 90 PTDD--AVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 95/257 (36%), Gaps = 49/257 (19%)
Query: 26 IIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT---NYDFQRYATLDGYVD 82
++V G G S W + + Y+V+ +D +G+ T +Y + A
Sbjct: 17 VVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQXAA------ 70
Query: 83 DLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNYIGGID 142
+L L A I+ A VGH++ A++G A+ P + LI + G R
Sbjct: 71 ELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLRIN---------- 120
Query: 143 PAHMEEVFRRMESNYES------------------WVAGFVPMALGADVPDMALQEFSRT 184
AH F+ E S W A P D +AL F
Sbjct: 121 -AHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWXAARAPRLEAEDA--LALAHFQGK 177
Query: 185 LFSMRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTV 244
+R AL AD H +R PV II +S DL VP A + + H P
Sbjct: 178 NNLLRRLNALK------RADFSHHADRIRCPVQIICASDDLLVPTACSSEL--HAALPDS 229
Query: 245 LEFL-PTHGHLPHVSSP 260
+ + P GH +V+ P
Sbjct: 230 QKXVXPYGGHACNVTDP 246
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG----SCDPTNYDFQRYATL 77
+ ++VF HGF SD + I FT Y VI+ DL G S D T ++F TL
Sbjct: 14 ETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDET-WNFDYITTL 72
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNY 137
L LD + G+S+ + L AI+ S LIL SP + N
Sbjct: 73 ------LDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQ 126
Query: 138 I 138
+
Sbjct: 127 L 127
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 45/257 (17%)
Query: 15 LNVRVVGQGQSIIVFSHG-FGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQ 72
L+ + G+G ++ G GS ++ + + + + + V+++D G P + DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
+ D + + AL+ + + +G S + L+AA P+ ++++ G + T
Sbjct: 74 A-DFFERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 133 NDGN--YIGGIDPAHMEEVFRR-MESNY---------ESWVAGFVPMALGADVPDMALQE 180
++ + Y G D + E R+ +E+ Y E WV G
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGI---------------- 176
Query: 181 FSRTLFSMRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
F PD + RH+L V+ P I+ D VP A+++ +H+
Sbjct: 177 ---RQFKHLPDGNI----------CRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK 223
Query: 241 GPTVLEFLPTHGHLPHV 257
G + L +P H H+
Sbjct: 224 G-SRLHLMPEGKHNLHL 239
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 45/257 (17%)
Query: 15 LNVRVVGQGQSIIVFSHG-FGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQ 72
L+ + G+G ++ G GS ++ + + + + + V+++D G P + DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
+ D + + AL+ + + +G S + L+AA P+ ++++ G + T
Sbjct: 74 A-DFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 133 NDGN--YIGGIDPAHMEEVFRR-MESNY---------ESWVAGFVPMALGADVPDMALQE 180
++ + Y G D + E R+ +E+ Y E WV G
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGI---------------- 176
Query: 181 FSRTLFSMRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
F PD + RH+L V+ P I+ D VP A+++ +H+
Sbjct: 177 ---RQFKHLPDGNI----------CRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK 223
Query: 241 GPTVLEFLPTHGHLPHV 257
G + L +P H H+
Sbjct: 224 G-SRLHLMPEGKHNLHL 239
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 45/257 (17%)
Query: 15 LNVRVVGQGQSIIVFSHG-FGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQ 72
L+ + G+G ++ G GS ++ + + + + + V+++D G P + DF
Sbjct: 14 LHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFP 73
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFT 132
+ D + + AL+ + + +G + + L+AA P+ ++++ G + T
Sbjct: 74 A-DFFERDAKDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 133 NDGN--YIGGIDPAHMEEVFRR-MESNY---------ESWVAGFVPMALGADVPDMALQE 180
++ + Y G D + E R+ +E+ Y E WV G
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGI---------------- 176
Query: 181 FSRTLFSMRPDIALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
F PD + RH+L V+ P I+ D VP A+++ +H+
Sbjct: 177 ---RQFKHLPDGNI----------CRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK 223
Query: 241 GPTVLEFLPTHGHLPHV 257
G + L +P H H+
Sbjct: 224 G-SRLHLMPEGKHNLHL 239
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 9 EFLLEALNVRVVGQGQS-IIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCD-P 66
E L + + V +G ++ HG+ WS+VI Y VI DL G + P
Sbjct: 13 EVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKP 72
Query: 67 TNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMI 107
D +Y +LD DD + LDAL I++ VGH +A++
Sbjct: 73 DLNDLSKY-SLDKAADDQAALLDALGIEKAYVVGHDFAAIV 112
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 19 VVGQGQS-IIVFSHGFGSDQ---SVWSRVIPSFTRAYRVISFDLMCSGSCD-PTNYDFQR 73
V G QS +V HG G S W +IP + V++ DL+ G + P Y
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHI 82
Query: 74 YATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG--GSP 129
+ + V+ +L ++ I++ VG+S+ + L + P F ++ L+G G+P
Sbjct: 83 MSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAP 140
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 13 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 72
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 73 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 118
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 15 LNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG---SCDPTNYDF 71
L V V G G +++ HG+ W R+ P Y V+ DL G + D D+
Sbjct: 23 LRVAVKGSGPPLLLL-HGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADY 81
Query: 72 QRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRF 131
+ A D L + L +R A +GH A +G A+ P + + + P
Sbjct: 82 SKAAL----ARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVVPIL 137
Query: 132 TN 133
N
Sbjct: 138 DN 139
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
++F HG + +W +IP ++R I+ DL+ G D + D+ D +V L +
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY----FFDDHVRYLDA 90
Query: 87 FLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
F++AL ++ V H + +G A P
Sbjct: 91 FIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 17 VRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYA- 75
RV G G +++ HGF +W RV P ++VI DL G D D Q
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 76 TLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRF 131
T L+ ++ L A GH+ A + A+ P S+L ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 13 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 72
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 73 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 118
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++AL ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 17 VRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYA- 75
RV G G +++ HGF +W RV P ++VI DL G D D Q
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 76 TLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRF 131
T L+ ++ L A GH A + A+ P S+L ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 17 VRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYA- 75
RV G G +++ HGF +W RV P ++VI DL G D D Q
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 76 TLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRF 131
T L+ ++ L A GH A + A+ P S+L ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDP--TNYDFQRYATL 77
G G+ ++ FSHG+ D +W + +R YR I+FD G D T D+
Sbjct: 17 GSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY------ 69
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAM-IGLLAAIHRPNLFSRLILIGG-SPRFTNDG 135
D + DD+ ++ L++ VG S+ + A H + L+L+G +P F
Sbjct: 70 DTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKP 129
Query: 136 NYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMAL---QEFSRTLFSMRPDI 192
+Y G+ P +VF R ++ A F+ + P + Q S+ + + I
Sbjct: 130 DYPQGV-PL---DVFARFKTELLKDRAQFIS---DFNAPFYGINKGQVVSQGVQTQTLQI 182
Query: 193 ALHVAR-------TAFA-ADLRHVLGLVRVPVCIIQSSVDLSVP 228
AL + TAFA D R + + VP +I D VP
Sbjct: 183 ALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVP 226
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Query: 17 VRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYA- 75
RV G G +++ HGF +W RV P ++VI DL G D D Q
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 76 TLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRF 131
T L+ ++ L A GH A + A+ P S+L ++ P +
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDP--TNYDFQRYATL 77
G G+ ++ FSHG+ D +W + +R YR I+FD G D T D+
Sbjct: 17 GSGKPVL-FSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY------ 69
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAM-IGLLAAIHRPNLFSRLILIGG-SPRFTNDG 135
D + DD+ ++ L++ VG S+ + A H + L+L+G +P F
Sbjct: 70 DTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKP 129
Query: 136 NYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMAL---QEFSRTLFSMRPDI 192
+Y G+ P +VF R ++ A F+ + P + Q S+ + + I
Sbjct: 130 DYPQGV-PL---DVFARFKTELLKDRAQFIS---DFNAPFYGINKGQVVSQGVQTQTLQI 182
Query: 193 ALHVAR-------TAFA-ADLRHVLGLVRVPVCIIQSSVDLSVP 228
AL + TAFA D R + + VP +I D VP
Sbjct: 183 ALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVP 226
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDP--TNYDFQRYATL 77
G G+ ++ FSHG+ D +W + +R YR I+FD G D T D+
Sbjct: 17 GSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY------ 69
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAM-IGLLAAIHRPNLFSRLILIGG-SPRFTNDG 135
D + DD+ ++ L++ VG S+ + A H + L+L+G +P F
Sbjct: 70 DTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPIFGQKP 129
Query: 136 NYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMAL---QEFSRTLFSMRPDI 192
+Y G+ P +VF R ++ A F+ + P + Q S+ + + I
Sbjct: 130 DYPQGV-PL---DVFARFKTELLKDRAQFIS---DFNAPFYGINKGQVVSQGVQTQTLQI 182
Query: 193 ALHVAR-------TAFA-ADLRHVLGLVRVPVCIIQSSVDLSVP 228
AL + TAFA D R + + VP +I D VP
Sbjct: 183 ALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVP 226
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 30/224 (13%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDP--TNYDFQRYATL 77
G G+ ++ FSHG+ D +W + +R YR I+FD G D T D+
Sbjct: 17 GSGKPVL-FSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY------ 69
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAM-IGLLAAIHRPNLFSRLILIGG-SPRFTNDG 135
D + DD+ ++ L++ VG S+ + A H + L+L+G +P F
Sbjct: 70 DTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKP 129
Query: 136 NYIGGIDPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMAL---QEFSRTLFSMRPDI 192
+Y G+ P +VF R ++ A F+ + P + Q S+ + + I
Sbjct: 130 DYPQGV-PL---DVFARFKTELLKDRAQFIS---DFNAPFYGINKGQVVSQGVQTQTLQI 182
Query: 193 ALHVAR-------TAFA-ADLRHVLGLVRVPVCIIQSSVDLSVP 228
AL + TAFA D R + + VP +I D VP
Sbjct: 183 ALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVP 226
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 27 IVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDP--TNYDFQRYATLDGYVDD 83
++FSHG+ D +W + +R YR I+FD G D T D+ D + DD
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY------DTFADD 75
Query: 84 LLSFLDALEIDRCAFVGHSVSAM-IGLLAAIHRPNLFSRLILIGG-SPRFTNDGNYIGGI 141
+ ++ L++ VG S+ + A H + L+L+G +P F +Y G+
Sbjct: 76 IAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV 135
Query: 142 DPAHMEEVFRRMESNYESWVAGFVPMALGADVPDMAL---QEFSRTLFSMRPDIALHVAR 198
P +VF R ++ A F+ + P + Q S+ + + IAL +
Sbjct: 136 -PL---DVFARFKTELLKDRAQFIS---DFNAPFYGINKGQVVSQGVQTQTLQIALLASL 188
Query: 199 -------TAFA-ADLRHVLGLVRVPVCIIQSSVDLSVP 228
TAFA D R + + VP +I D VP
Sbjct: 189 KATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVP 226
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 20 VGQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLD 78
+G G ++ + HGF W IP+ +A YRV++ D+ G + + Y ++
Sbjct: 51 LGSGPAVCL-CHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-EIEEYC-ME 107
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
++++FLD L + + F+GH M+ A+ P
Sbjct: 108 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 146
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 20 VGQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLD 78
+G G ++ + HGF W IP+ +A YRV++ D+ G + + Y ++
Sbjct: 36 LGSGPAVCL-CHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-EIEEYC-ME 92
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
++++FLD L + + F+GH M+ A+ P
Sbjct: 93 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 131
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9 EFLLEALNVRVVG-QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPT 67
E L E ++ VG + + ++F HG + +W +IP ++R I+ DL+ G D
Sbjct: 16 EVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKP 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ D+ D +V L +F++A+ ++ V H + +G A P
Sbjct: 76 DLDY----FFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPE 121
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 15 LNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRY 74
LNVR G G + +F HG S+ +V+ + + + I+ D G D ++
Sbjct: 60 LNVREKGSGP-LXLFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETGYE-- 116
Query: 75 ATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
+ Y DD+ + L VGHS+ A + AA P+L ++ I +P
Sbjct: 117 --ANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTP 169
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 20 VGQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLD 78
+G G ++ HGF W IP+ +A YRV++ D+ G + + Y ++
Sbjct: 255 LGSGPAV-CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPP-EIEEYC-ME 311
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
++++FLD L + + F+GH M+ A+ P
Sbjct: 312 VLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 350
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 32/173 (18%)
Query: 15 LNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSC-------DPT 67
+N V G G ++++ HGF + +W+RV P Y V+ DL G D
Sbjct: 17 INCVVGGSGPALLLL-HGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHA 75
Query: 68 NYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
NY F+ A+ D + L +R VGH+ G A+ P+ L ++
Sbjct: 76 NYSFRAMAS------DQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDI 129
Query: 128 SPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWV-----AGFVPMALGADVPD 175
P + EEV R + Y W A + +GAD PD
Sbjct: 130 IPTYVM------------FEEVDRFVARAYWHWYFLQQPAPYPEKVIGAD-PD 169
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 15 LNVRVVG--QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQ 72
L V VG +G ++ V G G + V + + +RV+ FD SG D
Sbjct: 15 LYVEDVGPVEGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQD-P 73
Query: 73 RYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGL 109
R T+D V+D L +AL ++R + H A++ L
Sbjct: 74 RLFTVDALVEDTLLLAEALGVERFGLLAHGFGAVVAL 110
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 31 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 86
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+S+ L A+ P+ +LIL+G
Sbjct: 87 --GLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 31 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 86
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+S+ L A+ P+ +LIL+G
Sbjct: 87 --GLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 32/174 (18%)
Query: 14 ALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSC-------DP 66
+N V G G ++++ HGF + +W+RV P Y V+ DL G D
Sbjct: 16 TINCVVGGSGPALLLL-HGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDH 74
Query: 67 TNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
NY F+ A+ D + L +R VGH G A+ P+ L ++
Sbjct: 75 ANYSFRAMAS------DQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLD 128
Query: 127 GSPRFTNDGNYIGGIDPAHMEEVFRRMESNYESWV-----AGFVPMALGADVPD 175
P + EEV R + Y W A + +GAD PD
Sbjct: 129 IIPTYVM------------FEEVDRFVARAYWHWYFLQQPAPYPEKVIGAD-PD 169
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 20 VGQGQSIIVFSHGFGSDQSVW---SRVIPSFTRAYRVISFDLMCSGSCDP--TNYDFQRY 74
VG Q++++ HG G + W SR I R + V++ D G D + F RY
Sbjct: 53 VGNDQTVVLL-HGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRY 111
Query: 75 ATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
A + L D L + R VG+S+ + A+ P RL+L+G
Sbjct: 112 AAMA-----LKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG 158
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
GQG +V HG G + W+ + P YRVI D G D R +
Sbjct: 33 GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSR-SD 91
Query: 77 LDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
L+ + L S +D L+I + +G+S+ + + P +L+L+GG
Sbjct: 92 LNARI--LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGG 140
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 28 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 83
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+++ L A+ P+ +LIL+G
Sbjct: 84 --GLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 31 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 86
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+++ L A+ P+ +LIL+G
Sbjct: 87 --GLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 31 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 86
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+++ L A+ P+ +LIL+G
Sbjct: 87 --GLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSR----VIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYAT 76
G G+++I+ HG G WS V P YRVI D D D QR
Sbjct: 31 GNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR--- 86
Query: 77 LDGYVDD--LLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
G V+ + +DAL+IDR VG+++ L A+ P+ +LIL+G
Sbjct: 87 --GLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 20 VGQGQSIIVFSHGFGSDQSVW---SRVIPSFTRAYRVISFDLMCSGSCDP--TNYDFQRY 74
VG Q++++ HG G + W SR I R + V++ D G D + F RY
Sbjct: 33 VGNDQTVVLL-HGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRY 91
Query: 75 ATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIG 126
A + L D L + R VG+++ + A+ P RL+L+G
Sbjct: 92 AAMA-----LKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDG 79
G GQ ++ F HG + +W +IP A YR ++ DL+ G + +++ L
Sbjct: 27 GSGQPVL-FLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYR----LQD 81
Query: 80 YVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+V F+DAL +D V H ++IG A P+
Sbjct: 82 HVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPD 119
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 20 VGQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSG-SCDPTNYDFQRYATL 77
+G G ++ + HGF W IP+ +A +RV++ D+ G S P + + YA +
Sbjct: 253 MGSGPALCL-CHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPP--EIEEYA-M 308
Query: 78 DGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPN 117
+ ++++FLD L I + F+GH + ++ A+ P
Sbjct: 309 ELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPE 348
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGY 80
Q ++V HGF W IP+ A YRV++ D G + Y Q+ +
Sbjct: 31 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRS--SKYRVQKAYRIKEL 88
Query: 81 VDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILI 125
V D++ LD+ ++ VGH A + A P+ + ++ I
Sbjct: 89 VGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGI 133
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGY 80
Q ++V HGF W IP+ A YRV++ D G + Y Q+ +
Sbjct: 25 QQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRS--SKYRVQKAYRIKEL 82
Query: 81 VDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILI 125
V D++ LD+ ++ VGH A + A P+ + ++ I
Sbjct: 83 VGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGI 127
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 104/260 (40%), Gaps = 21/260 (8%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGY 80
GQG +V HG+G + VW + + + + DL G + + L
Sbjct: 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS-------RGFGALS-- 60
Query: 81 VDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNYIGG 140
+ D+ + D+ ++G ++ ++ A+ P L+ + SP F+ + G
Sbjct: 61 LADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEW-PG 119
Query: 141 IDPAHMEEVFRRMESNYESWVAGFVPM-ALGADVPDMALQEFSRTLFSM-RPDI-----A 193
I P + +++ +++ V F+ + +G + + +T+ ++ P++
Sbjct: 120 IKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGG 179
Query: 194 LHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEFLPTHGH 253
L + +T DLR L V +P + +D VP V + + L + H
Sbjct: 180 LEILKT---VDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDK-LWPHSESYIFAKAAH 235
Query: 254 LPHVSSPAPVANAIQQLLRR 273
P +S PA + + L +R
Sbjct: 236 APFISHPAEFCHLLVALKQR 255
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 3 NYNNRGEFLLEA-LNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLM- 59
++ ++G+ L A L+V I+ HG W R I A YRVI+ D +
Sbjct: 24 DFTSQGQPLSXAYLDVAPKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVG 83
Query: 60 -CSGSCDPTNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNL 118
C S P +Y + + + + L+ L + R + +GHS + A+ P
Sbjct: 84 FCK-SSKPAHYQY----SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQ 138
Query: 119 FSRLILI 125
RL+L+
Sbjct: 139 VERLVLV 145
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG---SCDPTNYDFQRYATLDGYVDD 83
I+F HG + +W ++P R+I+ DL+ G DP+ + YA Y+D
Sbjct: 31 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 90
Query: 84 LLSFLDALEIDRCAFVGHSVSAMIGL-LAAIHR 115
L LD DR V H + +G A HR
Sbjct: 91 LWEALDLG--DRVVLVVHDWGSALGFDWARRHR 121
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCD---PTNYDFQRYATL 77
G+G +I VF HG + +W ++P R+++ DL+ G+ D P+ D Y
Sbjct: 26 GKGDAI-VFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGE- 83
Query: 78 DGYVDDLLSFLDALEI-DRCAFVGHSVSAMIGL-LAAIHR 115
D L + DAL++ D V H + +G A HR
Sbjct: 84 --QRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHR 121
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCD---PTNYDFQRYATL 77
G+G +I VF HG + +W ++P R+++ DL+ G+ D P+ D Y
Sbjct: 28 GKGDAI-VFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGE- 85
Query: 78 DGYVDDLLSFLDALEI-DRCAFVGHSVSAMIGL-LAAIHR 115
D L + DAL++ D V H + +G A HR
Sbjct: 86 --QRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHR 123
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG---SCDPTNYDFQRYATLDGYVDD 83
I+F HG + +W ++P R+I+ DL+ G DP+ + YA Y+D
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 84 LLSFLDALEIDRCAFVGHSVSAMIGL-LAAIHR 115
L LD DR V H + +G A HR
Sbjct: 92 LWEALDLG--DRVVLVVHDWGSALGFDWARRHR 122
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG---SCDPTNYDFQRYATLDGYVDD 83
I+F HG + +W ++P R+I+ DL+ G DP+ + YA Y+D
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 84 LLSFLDALEIDRCAFVGHSVSAMIGL-LAAIHR 115
L LD DR V H + +G A HR
Sbjct: 92 LWEALDLG--DRVVLVVHDWGSALGFDWARRHR 122
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 27 IVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG---SCDPTNYDFQRYATLDGYVDD 83
I+F HG + +W ++P R+I+ DL+ G DP+ + YA Y+D
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAEHRDYLDA 91
Query: 84 LLSFLDALEIDRCAFVGHSVSAMIGL-LAAIHR 115
L LD DR V H + +G A HR
Sbjct: 92 LWEALDLG--DRVVLVVHDWGSALGFDWARRHR 122
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 27 IVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCD--PTNYDFQRYATLDGYVDD 83
+VF HG+ W + F + YRVI+ D G D T +D +D Y D
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHD------MDTYAAD 77
Query: 84 LLSFLDALEIDRCAFVGHSV-SAMIGLLAAIHRPNLFSRLILIGGSP 129
+ + +AL++ +GHS + A P ++ +L+ P
Sbjct: 78 VAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 100/266 (37%), Gaps = 33/266 (12%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGY 80
GQG +V HG+G + VW + + + + DL G G+
Sbjct: 10 GQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS-------------RGF 56
Query: 81 VDDLLSFLDALEI------DRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTND 134
LS D E D+ ++G S+ ++ A+ P L+ + SP F+
Sbjct: 57 --GALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSAR 114
Query: 135 GNYIGGIDPAHMEEVFRRMESNYESWVAGFVPM-ALGADVPDMALQEFSRTLFSM-RPDI 192
+ GI P + +++ + + V F+ + G + + +T+ ++ P++
Sbjct: 115 DEW-PGIKPDVLAGFQQQLSDDQQRTVERFLALQTXGTETARQDARALKKTVLALPXPEV 173
Query: 193 -----ALHVARTAFAADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLGGPTVLEF 247
L + +T DLR L V P + +D VP V + + L +
Sbjct: 174 DVLNGGLEILKT---VDLRQPLQNVSXPFLRLYGYLDGLVPRKVVPXLDK-LWPHSESYI 229
Query: 248 LPTHGHLPHVSSPAPVANAIQQLLRR 273
H P +S PA + + L +R
Sbjct: 230 FAKAAHAPFISHPAEFCHLLVALKQR 255
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 83 DLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
DL+ LDAL+ID+ F+GHS+ + P+ +L+ I +P
Sbjct: 70 DLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 47 FTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAM 106
FT Y V +L G+ D D + T + DL + +AL I++ F GHS
Sbjct: 46 FTDHYSVYLVNLKGCGNSDSAKNDSEYSXTET--IKDLEAIREALYINKWGFAGHSAGGX 103
Query: 107 IGLLAAIHRPNLFSRLILIGGS 128
+ L+ A +++I+ G +
Sbjct: 104 LALVYATEAQESLTKIIVGGAA 125
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDP 66
GQG +++ HGFG W +++P + + VI+ DL G +P
Sbjct: 28 GQG-PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDP 66
GQG +++ HGFG W +++P + + VI+ DL G +P
Sbjct: 28 GQG-PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 GQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDP 66
GQG +++ HGFG W +++P + + VI+ DL G +P
Sbjct: 28 GQG-PLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 21 GQGQSIIVFSHGFGSDQSVWS-RVIPSFTRAYRVISFDLMCSG-SCDPTNYDFQRYATLD 78
G+G +++ HG S ++++ ++ + +RVI+ DL G S D + D R +++
Sbjct: 22 GEGAPLLMI-HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPD--RSYSME 78
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
GY D + + L I G S+ IG+ P + R ++I G+P
Sbjct: 79 GYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM--RGLMITGTP 127
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 15 LNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSG-SCDPTNYDFQR 73
+N+ G G +++ HG+ +W ++ P + V++ DL G S P +
Sbjct: 17 INLVKAGHGAPLLLL-HGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHI 75
Query: 74 YATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
+ D + + L ++ VGH A + A+ P+ +L L+ +P
Sbjct: 76 NYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAP 131
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 21 GQGQSIIVFSHGFGSDQSVWS-RVIPSFTRAYRVISFDLMCSG-SCDPTNYDFQRYATLD 78
G+G +++ HG S ++++ ++ + +RVI+ DL G S D + D R +++
Sbjct: 22 GEGAPLLMI-HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPD--RSYSME 78
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
GY D + + L I G S+ IG+ P + R ++I G+P
Sbjct: 79 GYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEM--RGLMITGTP 127
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 21 GQGQSIIVFSHGFGSDQSVW-SRVIPSFTRAYRVISFDLMCSG-SCDPTNYDFQRYATLD 78
G GQ I VFSHG+ + W S++I + YRVI+ D G S P + + +D
Sbjct: 17 GSGQPI-VFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSGN-----DMD 70
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSA 105
Y DDL ++ L++ G S
Sbjct: 71 TYADDLAQLIEHLDLRDAVLFGFSTGG 97
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 26 IIVFSHGFGSDQSVWSRV-IPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDL 84
+++ HG W V +P + YRV++ DL G Y++L ++ +
Sbjct: 28 VVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEM-VTSYSSLT-FLAQI 85
Query: 85 LSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILI 125
+ L VGHS+ AM+ A RP LIL+
Sbjct: 86 DRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 83 DLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
DL+ LDA +ID+ F+GHS+ + P+ +L+ I +P
Sbjct: 70 DLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 21 GQGQSIIVFSHGFGSDQSVWS-RVIPSFTRAYRVISFDLMCSG-SCDPTNYDFQRYATLD 78
G+G +++ HG S ++++ ++ + +RVI+ DL G S D + D R +++
Sbjct: 22 GEGAPLLMI-HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPD--RSYSME 78
Query: 79 GYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGGSP 129
GY D + + L I G + IG+ P + R ++I G+P
Sbjct: 79 GYADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPEM--RGLMITGTP 127
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 GQSIIVFSHGFGSDQSVWSRVIPSFTRA-YRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
+ + + HG + ++ ++IP F + RVI+ D G D D + Y T + +
Sbjct: 46 AEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSD-KPVDEEDY-TFEFHR 103
Query: 82 DDLLSFLDALEIDRCAFVGHSVSAMIGLLAAIHRPNLFSRLILIGG 127
+ LL+ ++ L++ V +GL + P+ F RLI++
Sbjct: 104 NFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 80 YVDDLLSFLDALEIDRCAF----VGHSVSAMIGLLAAIHRPNLFSRLILI 125
+V D+L +D+++ D +GHS+ I +L A RP F+ ++LI
Sbjct: 114 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI 163
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 18 RVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLM--CSGSCDPTNYDFQRYA 75
+ G +++I SHG G + + A ++ DL+ + +R
Sbjct: 53 KPTGTPKALIFVSHGAGEHSGRYEEL------ARMLMGLDLLVFAHDHVGHGQSEGERMV 106
Query: 76 TLD--GYVDDLLSFLDALEIDRCAF----VGHSVSAMIGLLAAIHRPNLFSRLILI 125
D +V D+L +D+++ D +GHS+ I +L A RP F+ ++LI
Sbjct: 107 VSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI 162
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 80 YVDDLLSFLDALEIDRCAF----VGHSVSAMIGLLAAIHRPNLFSRLILI 125
+V D+L +D+++ D +GHS+ I +L A RP F+ ++LI
Sbjct: 96 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLI 145
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
++ ++F HG + +W V+P R I DL+ G + Y LD Y
Sbjct: 41 HAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNG--SYRLLDHY- 97
Query: 82 DDLLSFLDALEI-DRCAFVGHSVSAMIGL 109
L ++ + L + + FVGH A +
Sbjct: 98 KYLTAWFELLNLPKKIIFVGHDWGAALAF 126
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
++ ++F HG + +W V+P R I DL+ G + Y LD Y
Sbjct: 42 HAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNG--SYRLLDHY- 98
Query: 82 DDLLSFLDALEI-DRCAFVGHSVSAMIGL 109
L ++ + L + + FVGH A +
Sbjct: 99 KYLTAWFELLNLPKKIIFVGHDWGAALAF 127
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
++ ++F HG + +W V+P R I DL+ G + Y LD Y
Sbjct: 42 HAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNG--SYRLLDHY- 98
Query: 82 DDLLSFLDALEI-DRCAFVGHSVSAMIGL 109
L ++ + L + + FVGH A +
Sbjct: 99 KYLTAWFELLNLPKKIIFVGHDWGAALAF 127
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 22 QGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYV 81
++ ++F HG + +W V+P R I DL+ G + Y LD Y
Sbjct: 41 HAENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNG--SYRLLDHY- 97
Query: 82 DDLLSFLDALEI-DRCAFVGHSVSAMIGL 109
L ++ + L + + FVGH A +
Sbjct: 98 KYLTAWFELLNLPKKIIFVGHDWGAALAF 126
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 28 VFSHGFGSDQSVWSRVIPSFTR-AYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
V H +W ++ P ++V + DL SG DP + + D Y + LL+
Sbjct: 7 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASG-VDPRQ--IEEIGSFDEYSEPLLT 63
Query: 87 FLDALEI-DRCAFVGHSVSAMIGLLAA 112
FL+AL ++ VG S + +AA
Sbjct: 64 FLEALPPGEKVILVGESCGGLNIAIAA 90
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 27 IVFSHGF-GSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLL 85
++ SHGF GS QS+ + F RA ++ + P +T + D++
Sbjct: 54 VLVSHGFTGSPQSM-RFLAEGFARAGYTVATPRLTGHGTTPAEMA---ASTASDWTADIV 109
Query: 86 SFLDALEIDRCA---FVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNYIGGID 142
+ + LE +RC G S+ + + AA P F+ ++ I + R + +
Sbjct: 110 AAMRWLE-ERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFN 168
Query: 143 PAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDIAL-HVARTAF 201
P E+ +G+D+ ++E + + + P A+ H+
Sbjct: 169 PDAPAEL-----------------PGIGSDIKAEGVKELA---YPVTPVPAIKHLITIGA 208
Query: 202 AADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
A++ +L V+ P IIQS D VPP E + +G
Sbjct: 209 VAEM--LLPRVKCPALIIQSREDHVVPPHNGELIYNGIG 245
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 27 IVFSHGF-GSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLL 85
++ SHGF GS QS+ + F RA ++ + P +T + D++
Sbjct: 52 VLVSHGFTGSPQSM-RFLAEGFARAGYTVATPRLTGHGTTPAEMA---ASTASDWTADIV 107
Query: 86 SFLDALEIDRCA---FVGHSVSAMIGLLAAIHRPNLFSRLILIGGSPRFTNDGNYIGGID 142
+ + LE +RC G S+ + + AA P F+ ++ I + R + +
Sbjct: 108 AAMRWLE-ERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFN 166
Query: 143 PAHMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFSRTLFSMRPDIAL-HVARTAF 201
P E+ +G+D+ ++E + + + P A+ H+
Sbjct: 167 PDAPAEL-----------------PGIGSDIKAEGVKELA---YPVTPVPAIKHLITIGA 206
Query: 202 AADLRHVLGLVRVPVCIIQSSVDLSVPPAVAEYMRRHLG 240
A++ +L V+ P IIQS D VPP E + +G
Sbjct: 207 VAEM--LLPRVKCPALIIQSREDHVVPPHNGELIYNGIG 243
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 28 VFSHGFGSDQSVWSRVIPSFTR-AYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
V H +W ++ P ++V + DL SG DP + + D Y + LL+
Sbjct: 7 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASG-VDPRQ--IEEIGSFDEYSEPLLT 63
Query: 87 FLDALEI-DRCAFVGHSVSAMIGLLAA 112
FL+AL ++ VG S + +AA
Sbjct: 64 FLEALPPGEKVILVGESCGGLNIAIAA 90
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 28 VFSHGFGSDQSVWSRVIPSFTR-AYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
V H +W ++ P ++V + DL SG DP + + D Y + LL+
Sbjct: 7 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASG-VDPRQ--IEEIGSFDEYSEPLLT 63
Query: 87 FLDALEI-DRCAFVGHSVSAMIGLLAA 112
FL+AL ++ VG S + +AA
Sbjct: 64 FLEALPPGEKVILVGESCGGLNIAIAA 90
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 28 VFSHGFGSDQSVWSRVIPSFTR-AYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLS 86
V H +W ++ P ++V + DL SG DP + + D Y + LL+
Sbjct: 6 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASG-VDPRQ--IEEIGSFDEYSEPLLT 62
Query: 87 FLDALEI-DRCAFVGHSVSAMIGLLAA 112
FL+AL ++ VG S + +AA
Sbjct: 63 FLEALPPGEKVILVGESCGGLNIAIAA 89
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 26 IIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDL 84
+I F HG+ W + F YRV++ D G +D +D Y DD+
Sbjct: 24 VIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQV-WDGH---DMDHYADDV 79
Query: 85 LSFLDALEIDRCAFVGHSV-SAMIGLLAAIHRPNLFSRLILIGGSP 129
+ + L I VGHS + A H + ++ +LI P
Sbjct: 80 AAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVP 125
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats
From Alpha-Actinin
Length = 250
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 145 HMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFS---RTLFSMRPDIALHVAR 198
H+ E FR+ S +E+W G + L D +L E R + D+A H R
Sbjct: 14 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDR 70
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 80 YVDDLLSFLDALEIDRCAF----VGHSVSAMIGLLAAIHRPNLFSRLILI 125
+V D+L +D+ + D +GHS I +L A RP F+ +LI
Sbjct: 113 FVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLI 162
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 145 HMEEVFRRMESNYESWVAGFVPMALGADVPDMALQEFS---RTLFSMRPDIALHVAR 198
H+ E FR+ S +E+W G + L D +L E R + D+A H R
Sbjct: 131 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDR 187
>pdb|3HN2|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|B Chain B, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|C Chain C, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
pdb|3HN2|D Chain D, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Geobacter Metallireducens Gs-15
Length = 312
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 7/25 (28%)
Query: 78 DGYVDDLLSFLDA-------LEIDR 95
DGYVDD+L F DA +EIDR
Sbjct: 239 DGYVDDMLEFTDAMGEYKPSMEIDR 263
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 14 ALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSF 47
A N R + GQ HGFG S++ RVIP F
Sbjct: 32 AKNFRELATGQ------HGFGYKDSIFHRVIPQF 59
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 14 ALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSF 47
A N R + GQ HGFG S++ RVIP F
Sbjct: 33 AKNFRELATGQ------HGFGYKDSIFHRVIPQF 60
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 25 SIIVFSHGFGSDQSVWSRVIPSF-TRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDD 83
+I F HG+ W + F + +RV++ D G +D +D Y DD
Sbjct: 27 KVIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQV-WDGH---DMDHYADD 82
Query: 84 LLSFLDALEIDRCAFVGHSV-SAMIGLLAAIHRPNLFSRLILIGGSP 129
+ ++ L VGHS + A H S+ +LI P
Sbjct: 83 AAAVVEKLGTHGAMHVGHSTGGGEVVRYIARHGERNVSKAVLISSVP 129
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 228 PPAVAEYMRRHL--GGPTVLEFLPTHGHLPHVSSPAPVAN 265
P AE +++ + G T+++ L THGHL HV + + +A
Sbjct: 31 PGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQ 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,220,013
Number of Sequences: 62578
Number of extensions: 333320
Number of successful extensions: 1121
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 119
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)