BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045775
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
+NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 186 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 231
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
+NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 461 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 506
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 3 ATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH 41
A ++S A ++ C +L E+I E + + L A I H
Sbjct: 213 AELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFH 251
>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L-
Plastin
Length = 124
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
NA Y IS+ARK+G ++ LPED+ EVN KM++T+ A +M MK+
Sbjct: 73 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 117
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human
Plastin 3 T-Isoform
Length = 124
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
NA Y +S+AR++G ++ LPED+ EV KM++T+ A +M MK+
Sbjct: 73 NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 117
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM 40
NA ISIARKLG IF+LPEDI V +++L S+M
Sbjct: 473 NARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLM 511
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 3 ATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH 41
A ++ A KLGC F+ P D+ N K+ L A++ +
Sbjct: 237 AESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN 275
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 11 RKLGCSIFLLPEDIT--EVNQKMILTLTASIMHWF--MKQPVEEKASGIS 56
++LG + L PED+ + ++K I+T A+ H+F MK E SG S
Sbjct: 76 KELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKSGPS 125
>pdb|3NM7|A Chain A, Crystal Structure Of Borrelia Burgdorferi Pur-Alpha
pdb|3NM7|B Chain B, Crystal Structure Of Borrelia Burgdorferi Pur-Alpha
pdb|3NM7|C Chain C, Crystal Structure Of Borrelia Burgdorferi Pur-Alpha
pdb|3NM7|D Chain D, Crystal Structure Of Borrelia Burgdorferi Pur-Alpha
Length = 127
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 16 SIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSENGSQSETISNSTLDDS 75
SIF+ E+I E ++ + +KQ V + G S N E S LDDS
Sbjct: 56 SIFVYEENINEFESNLLKAIAV------IKQKVSTGSVGSSARHNKGYGEYGERSKLDDS 109
Query: 76 ASD 78
D
Sbjct: 110 RFD 112
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 38 SIMHWFMKQP----------VEEKASGISDSENGSQSETISNSTLDDSASD 78
S MHW+ ++P SGI D +GS S T T+D +D
Sbjct: 35 SFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEAD 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.124 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,143,161
Number of Sequences: 62578
Number of extensions: 65659
Number of successful extensions: 159
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 11
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)