BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045778
         (132 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ST43|PH1_ARATH Pleckstrin homology domain-containing protein 1 OS=Arabidopsis
           thaliana GN=PH1 PE=2 SV=2
          Length = 145

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 92/144 (63%), Gaps = 13/144 (9%)

Query: 1   MENVWRASSGQDPNPVDYKGIEFWSQPGEIGPANKARRLHQNLAPPLVHLKQGEHLWFKD 60
           ME++WR ++GQDP+  DY+GIEFWS P   G   K     +        LK+G+ LWFKD
Sbjct: 1   MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  SHNI-TRGSTPRGFIPVGTCLTVKCAED------------GEYTMYSVADTEKEKGERIN 107
                 RGSTPRG I VG CLTVK AED            G YTM+ +AD EKEK E IN
Sbjct: 61  QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 108 SIGRAIVQHSRSVTESEVVEYDSK 131
           SIGR+IVQHSRSVT+SEV++YD +
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHR 144


>sp|A1Z8E9|BBS4_DROME Bardet-Biedl syndrome 4 protein homolog OS=Drosophila melanogaster
           GN=BBS4 PE=3 SV=1
          Length = 486

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 19  KGIEFWSQPGEIGPANKARRLHQNLAPPLVHLKQGEHLWFKDSHNITRGSTPRGFIPVGT 78
           K IE       + P N    +  ++    ++  Q  H    +  +I R  +P+G +  G 
Sbjct: 198 KAIEILENCLHLTPENSEVLIEISVLYLKINETQKAHDRLAEVVSIERKCSPKGLLAFGA 257

Query: 79  CLTVKCAEDGEYTMYS-VADTEKEKGERINSIG 110
            L  +   DG  + YS +A+ E E  E  N+IG
Sbjct: 258 ILQSRNDIDGALSKYSQIANAEPEIAELWNNIG 290


>sp|P14758|YCY5_ASTLO Uncharacterized 25.9 kDa protein in rpl12-rps7 intergenic region
           OS=Astasia longa PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 100 KEKGERIN-SIGRAIVQHSRSVTESEVVEYDSKW 132
           K K +RIN S+G+ I++ S S+TE E V  D  W
Sbjct: 100 KTKEQRINFSLGKMIIKESESLTELEYVLLDLFW 133


>sp|A6UB95|SDHD_SINMW Probable D-serine dehydratase OS=Sinorhizobium medicae (strain
           WSM419) GN=dsdA PE=3 SV=1
          Length = 442

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 49  HLKQGEHLWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDGEYTMYSVADTEKEKGERINS 108
           HL   E   F  S++I  GST    + VG       A   E T++  +D +  K ER+  
Sbjct: 141 HLASAEARAFFSSYSIAVGSTGNLGLSVGVAAR---ALGFEATVHMSSDAKPWKVERLRK 197

Query: 109 IGRAIVQHSRSVTES 123
           +G  +VQH    T +
Sbjct: 198 LGVKVVQHEADYTTA 212


>sp|Q9CMZ2|DAPD_PASMU 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
           OS=Pasteurella multocida (strain Pm70) GN=dapD PE=3 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 48  VHLKQGEHLWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDGEYTMYSVADTEKEKGERIN 107
           V + Q   ++ +++  +T G  P G + V   L  KC   G+Y++Y     +K   + + 
Sbjct: 205 VFIGQSTKIYDRETGEVTYGRVPAGSVVVSGSLPSKC---GKYSLYCAVIVKKVDAKTLG 261

Query: 108 SIG 110
            +G
Sbjct: 262 KVG 264


>sp|P31629|ZEP2_HUMAN Transcription factor HIVEP2 OS=Homo sapiens GN=HIVEP2 PE=1 SV=2
          Length = 2446

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 38   RLHQNLAPPLVHLKQGEHLWFKDSHNITRGSTPRGFIPVGTCLTVKCAEDGEYTMYSVAD 97
            R H ++ P +  L    +  FK   N+T+    +  +        KC E G  +M SV D
Sbjct: 1819 RTHTDVRPYVCKLC---NFAFKTKGNLTKHMKSKAHM-------KKCLELG-VSMTSVDD 1867

Query: 98   TEKEKGERINSIGRAIVQHSRS 119
            TE E+ E +  + +A  +HS S
Sbjct: 1868 TETEEAENLEDLHKAAEKHSMS 1889


>sp|C4V924|SYVC_NOSCE Probable valine--tRNA ligase, cytoplasmic OS=Nosema ceranae
          (strain BRL01) GN=NCER_101032 PE=3 SV=1
          Length = 883

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 6  RASSGQDPNPVDYKGIEFWSQPGEIGPANKARRLHQNLAPP 46
          ++SSG DP PV+ K   +W       P  ++ +    + PP
Sbjct: 42 KSSSGYDPMPVEQKWNNYWLSNNLFEPQERSNKFVMCMPPP 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,121,468
Number of Sequences: 539616
Number of extensions: 2221718
Number of successful extensions: 3101
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3095
Number of HSP's gapped (non-prelim): 16
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)