BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045781
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 141/268 (52%), Gaps = 25/268 (9%)
Query: 16 ASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFR 75
A R DV+F +NY TW +DH N G E+ L L +G GF SK Y G F + +
Sbjct: 8 ALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 67
Query: 76 MKIPVNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLW 135
+ +P +SAG VTA YL+SQ H E+D EFLGN G+ + N FT G G R+ R LW
Sbjct: 68 L-VPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLW 126
Query: 136 FDTTADFHTYQILWNHHQIA----------------------FHELEEIEASLWNA-SWA 172
FD T +FH Y +LWN + I F++ +I +SLWNA WA
Sbjct: 127 FDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWA 186
Query: 173 TDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRR 232
T GG + WS APF A YR F + C + + WW++ F +LD+ Q RR
Sbjct: 187 TRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGAR-WWDQKEFQDLDAFQYRR 245
Query: 233 YQNVRRHHMVYDYCSDTHRYPRPPTECQ 260
VR+ + +Y+YC+D RYP P EC+
Sbjct: 246 LSWVRQKYTIYNYCTDRSRYPSMPPECK 273
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 128/263 (48%), Gaps = 35/263 (13%)
Query: 13 GLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYF 72
G + S I+ + FDQ Y WG H +QG + + L SG+GF S Y SG+F
Sbjct: 8 GYYPSSQITSLGFDQGYTNLWGPQHQRV-DQG-SLTIWLDSTSGSGFKSINRYRSGYFGA 65
Query: 73 RFRMKIPVNSAGVVTACYLTSQGH---NHHEVDIEFLGNNEGKHIYISANAFTNGIGGRK 129
+++ +AGV+T+ YL++ H E+DIEFLG GK + N F G G R+
Sbjct: 66 NIKLQSGY-TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDRE 124
Query: 130 HRFSLWFDTTADFHTYQILWNHHQIAFHELEEIE--------------------ASLWNA 169
R LWFD T D+H Y I W +I F ++++ S+W+A
Sbjct: 125 MRIHLWFDPTQDYHNYAIYWTPSEIIFF-VDDVPIRRYPRKSDATFPLRPLWVYGSVWDA 183
Query: 170 -SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSN 228
SWAT+ G+ + + Y PF +Y F + C+V+ +S N S Y +L
Sbjct: 184 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPY-------GQLSQQ 236
Query: 229 QRRRYQNVRRHHMVYDYCSDTHR 251
Q + V++++MVY+YC D R
Sbjct: 237 QVAAMEWVQKNYMVYNYCDDPTR 259
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 128/263 (48%), Gaps = 35/263 (13%)
Query: 13 GLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYF 72
G + S I+ + FDQ Y WG H +QG + + L SG+GF S Y SG+F
Sbjct: 31 GYYPSSQITSLGFDQGYTNLWGPQHQRV-DQG-SLTIWLDSTSGSGFKSINRYRSGYFGA 88
Query: 73 RFRMKIPVNSAGVVTACYLTSQGH---NHHEVDIEFLGNNEGKHIYISANAFTNGIGGRK 129
+++ +AGV+T+ YL++ H E+DIEFLG GK + N F G G R+
Sbjct: 89 NIKLQSGY-TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDRE 147
Query: 130 HRFSLWFDTTADFHTYQILWNHHQIAFHELEEIE--------------------ASLWNA 169
R LWFD T D+H Y I W +I F ++++ S+W+A
Sbjct: 148 MRIHLWFDPTQDYHNYAIYWTPSEIIFF-VDDVPIRRYPRKSDATFPLRPLWVYGSVWDA 206
Query: 170 -SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSN 228
SWAT+ G+ + + Y PF +Y F + C+V+ +S N S Y +L
Sbjct: 207 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPY-------GQLSQQ 259
Query: 229 QRRRYQNVRRHHMVYDYCSDTHR 251
Q + V++++MVY+YC D R
Sbjct: 260 QVAAMEWVQKNYMVYNYCDDPTR 282
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 129/268 (48%), Gaps = 40/268 (14%)
Query: 13 GLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYF 72
G + S I+ + FDQ Y WG H +QG + + L SG+GF S Y SG+F
Sbjct: 10 GYYPSSQITSLGFDQGYTNLWGPQHQRV-DQG-SLTIWLDSTSGSGFKSINRYRSGYFGA 67
Query: 73 RFRMKIPVNSAGVVTACYLTSQGH---NHHEVDIEFLGNNEGKHIYISANAFTNGIG--- 126
+++ +AGV+T+ YL++ H E+DIEFLG GK + N F G G
Sbjct: 68 NIKLQSGY-TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYN 126
Query: 127 --GRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIE--------------------A 164
GR+ R LWFD T D+H Y I W +I F ++++
Sbjct: 127 IIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFF-VDDVPIRRYPRKSDATFPLRPLWVYG 185
Query: 165 SLWNAS-WATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFW 223
S+W+AS WAT+ G+ + + Y PF +Y F + C+V+ +S N S Y
Sbjct: 186 SVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPY-------G 238
Query: 224 ELDSNQRRRYQNVRRHHMVYDYCSDTHR 251
+L Q + V++++MVY+YC D R
Sbjct: 239 QLSQQQVAAMEWVQKNYMVYNYCDDPTR 266
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 129/268 (48%), Gaps = 40/268 (14%)
Query: 13 GLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYF 72
G + S I+ + FDQ Y WG H +QG + + L SG+GF S Y SG+F
Sbjct: 7 GYYPSSQITSLGFDQGYTNLWGPQHQRV-DQG-SLTIWLDSTSGSGFKSINRYRSGYFGA 64
Query: 73 RFRMKIPVNSAGVVTACYLTSQGH---NHHEVDIEFLGNNEGKHIYISANAFTNGIG--- 126
+++ +AGV+T+ YL++ H E+DIEFLG GK + N F G G
Sbjct: 65 NIKLQSGY-TAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYN 123
Query: 127 --GRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIE--------------------A 164
GR+ R LWFD T D+H Y I W +I F ++++
Sbjct: 124 IIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFF-VDDVPIRRYPRKSDATFPLRPMWVYG 182
Query: 165 SLWNAS-WATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFW 223
S+W+AS WAT+ G+ + + Y PF +Y F + C+V+ +S N S Y
Sbjct: 183 SVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPY-------G 235
Query: 224 ELDSNQRRRYQNVRRHHMVYDYCSDTHR 251
+L Q + V++++MVY+YC D R
Sbjct: 236 QLSQQQVAAMEWVQKNYMVYNYCDDPTR 263
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 33 WGYDHFWTPNQGREVVLSLCYPS-----GAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVT 87
W +DH + G E+ LSL PS G G S YG G + + P + G+V+
Sbjct: 21 WAFDHVSMTSLG-EMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK---PAKNVGIVS 76
Query: 88 ACYLTS---QGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHT 144
A Y ++ G E+DIEFLG + K + N +TNG+G + +L FD +HT
Sbjct: 77 AFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHT 133
Query: 145 YQILWNHHQIAFH 157
Y W + I ++
Sbjct: 134 YAFDWQPNSIKWY 146
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + + P + G+V++ + T G H E+DIEFLG + K +
Sbjct: 8 STNIYGYGLYEVSMK---PAKNTGIVSS-FFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 117 SANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 101
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYL---TSQGHNHHEVDIEFLGNNEGKHIYIS 117
S +YG G + MK P + G+V++ + + G E+DIEFLG + K +
Sbjct: 8 STNIYGYGLY--EVSMK-PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQ 61
Query: 118 ANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 62 FNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 101
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + MK P + G+V++ + T G H E+DIEFLG + K +
Sbjct: 64 STNIYGYGLY--EVSMK-PAKNTGIVSS-FFTYTGPAHGTQWDEIDIEFLGKDTTK---V 116
Query: 117 SANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 117 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 157
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + MK P + G+V++ + T G H E+DIEFLG + K +
Sbjct: 66 STNIYGYGLY--EVSMK-PAKNTGIVSS-FFTYTGPAHGTQWDEIDIEFLGKDTTK---V 118
Query: 117 SANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 119 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 159
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + MK P + G+V++ + T G H E+DIEFLG + K +
Sbjct: 8 STNIYGYGLY--EVSMK-PAKNTGIVSS-FFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 117 SANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 101
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 55 SGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNE 110
+GA + ++ +G G + + RMK P + G+V++ + T G H E+DIEFLG +
Sbjct: 80 AGAEYRTRDKFGYGLY--QVRMK-PAKNPGIVSS-FFTYTGPVHGTPWDEIDIEFLGKDT 135
Query: 111 GKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIA 155
K + N +TN G ++ + L FD + DFH Y W + IA
Sbjct: 136 TK---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIA 177
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 46 EVVLSLCYPSGAGFG-----SKLLYGSGFFYFRFRMKIPVNSAGVVTACYL---TSQGHN 97
E+ LSL PS F S YG G + + P + G+V++ + + G
Sbjct: 46 EMRLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK---PAKNVGIVSSFFTYTGPTDGTP 102
Query: 98 HHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
E+DIEFLG + K + N +TNG+G + +L FD +HTY W + I ++
Sbjct: 103 WDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWY 159
Query: 158 ELEEIEASLWNASWATDGGRMQISWSYA 185
+++ + T G M W+ A
Sbjct: 160 VDGQLKHTATTQIPQTPGKIMMNLWNGA 187
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 68 GFFYFRFRMKIPVNSAGVVTACYL---TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNG 124
G+ + RMK P + G+V++ + + G E+DIEFLG + K + N +TNG
Sbjct: 95 GYGLYEVRMK-PAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNG 150
Query: 125 IGGRKHRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASLWNASWATDGGRMQISWS 183
G + L FD +HTY W + I ++ +++ + N T G M W+
Sbjct: 151 AGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQIPTTPGKIMMNLWN 209
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + MK P + G+V++ + T G H ++DI+FLG + K +
Sbjct: 66 STNIYGYGLY--EVSMK-PAKNTGIVSS-FFTYTGPAHGTQWDQIDIQFLGKDTTK---V 118
Query: 117 SANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAFH 157
N +TNG+GG + SL FD + FHTY W I ++
Sbjct: 119 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWY 159
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 86 VTACYLTSQGHNH----HEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTAD 141
+ + + T G H E+DIEFLG + K + N +TNG+GG + SL FD +
Sbjct: 4 IVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKG 60
Query: 142 FHTYQILWNHHQIAFH 157
FHTY W I ++
Sbjct: 61 FHTYAFDWQPGYIKWY 76
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 72 FRFRMKIPVNSAGVVTACYL------TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGI 125
F RMK+ S G V++ +L + G EVDIE LG N G +N T
Sbjct: 21 FEARMKMAAAS-GTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIITGKA 76
Query: 126 GGRK-----HRFSLWFDTTADFHTYQILWNHHQI 154
G +K H S D FHTY + W + +
Sbjct: 77 GAQKTSIKHHAVSPAADQA--FHTYGLEWTPNYV 108
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 72 FRFRMKIPVNSAGVVTACYL------TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGI 125
F RMK+ S G V++ +L + G EVDIE LG N G +N T
Sbjct: 20 FEARMKMAAAS-GTVSSMFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIITGKA 75
Query: 126 GGRK-----HRFSLWFDTTADFHTYQILWNHHQI 154
G +K H S D FHTY + W + +
Sbjct: 76 GAQKTSEKHHAVSPAADQA--FHTYGLEWTPNYV 107
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 104 EFLGNNEGKHIYISANAFTNGIG-GRKHRFSLWFDTTADFHTYQILWNHH---QIAFHEL 159
+FL +G+ + GI G K+ ++ + D IL N + +++ L
Sbjct: 135 KFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY-VHRDLAARNILVNSNLVCKVSDFGL 193
Query: 160 EEIEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNE 219
+ A++ T GG++ I W+ AP YR F AS W
Sbjct: 194 SRVLEDDPEATYTTSGGKIPIRWT-APEAISYRKF---------------TSASDVWSFG 237
Query: 220 VRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRP 255
+ WE+ + R Y + H V +D R P P
Sbjct: 238 IVMWEVMTYGERPYWELSNHE-VMKAINDGFRLPTP 272
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 72 FRFRMKIPVNSAGVVTACYL------TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGI 125
F RMK+ S G V++ L + G EVDIE LG N G +N T
Sbjct: 21 FEARMKMAAAS-GTVSSMILYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIITGKA 76
Query: 126 GGRK-----HRFSLWFDTTADFHTYQILWNHHQI 154
G +K H S D FHTY + W + +
Sbjct: 77 GAQKTSEKHHAVSPAADQA--FHTYGLEWTPNYV 108
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 61 SKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQGHNH----HEVDIEFLGNNEGKHIYI 116
S +YG G + MK P + G+V++ + T G H E+DIEFLG + K +
Sbjct: 154 STNIYGYGLY--EVSMK-PAKNTGIVSS-FFTYTGPAHGTQWDEIDIEFLGKDTTK---V 206
Query: 117 SANAFTNG 124
N +TNG
Sbjct: 207 QFNYYTNG 214
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 188 EARYRGFDVARCSVDKSSDMNQCYASHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCS 247
+ R V +++ +D S W V WE+ + Y V+ H M YDY
Sbjct: 205 QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEM-YDYLL 263
Query: 248 DTHRYPRP 255
HR +P
Sbjct: 264 HGHRLKQP 271
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 67 SGFFYFRFRMKIP-----VNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAF 121
SG Y R K+ + S G+ A Y N+ D++ + I ++ AF
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSKGISAAAYHAGL-ENNVRADVQEKFQRDDLQIVVATVAF 296
Query: 122 TNGIGGRKHRFSLWFDTTADFHTY 145
GI RF + FD + +Y
Sbjct: 297 GXGINKPNVRFVVHFDIPRNIESY 320
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 72 FRFRMKIPVNSAGVVTACYL------TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGI 125
F R K ++G V++ +L + G EVDIE LG N G +N T
Sbjct: 20 FEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIITGKA 75
Query: 126 GGRK-----HRFSLWFDTTADFHTYQILWNHHQI 154
G +K H S D FHTY + W + +
Sbjct: 76 GAQKTSEKHHAVSPAADQA--FHTYGLEWTPNYV 107
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 72 FRFRMKIPVNSAGVVTACYL------TSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGI 125
F R K S G V++ +L + G EVDIE LG N G +N T
Sbjct: 23 FEARXKXAAAS-GTVSSXFLYQNGSEIADGRPWVEVDIEVLGKNPGS---FQSNIITGKA 78
Query: 126 GGRK-----HRFSLWFDTTADFHTYQILWNHHQI 154
G +K H S D FHTY + W + +
Sbjct: 79 GAQKTSEKHHAVSPAADQA--FHTYGLEWTPNYV 110
>pdb|4GER|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4GER|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
Length = 304
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 36 DHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRF------RMKIPVNSAGVVTAC 89
D +TPN + + S+ P+ LY Y + NS + A
Sbjct: 178 DDIYTPNIAGDALRSMSNPT--------LYDQPDHYSNLYTGSSDNGGVHTNSGIINKAY 229
Query: 90 YLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTN 123
YL +QG H V + +G + IY S AFTN
Sbjct: 230 YLLAQGGTFHGVTVNGIGRDAAVQIYYS--AFTN 261
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 20/154 (12%)
Query: 105 FLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHH---QIAFHELEE 161
FL ++G+ + G+G S D +L + + +++ L
Sbjct: 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 162 IEASLWNASWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYASHYWWNEVR 221
+ +A++ T GG++ I W+ AP +R F AS W V
Sbjct: 200 VLEDDPDAAYTTTGGKIPIRWT-APEAIAFRTF---------------SSASDVWSFGVV 243
Query: 222 FWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRP 255
WE+ + R Y N+ ++ + +R P P
Sbjct: 244 MWEVLAYGERPYWNMTNRDVI-SSVEEGYRLPAP 276
>pdb|3TGH|A Chain A, Gap50 The Anchor In The Inner Membrane Complex Of
Plasmodium
Length = 342
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 99 HEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQI 147
H+ ++E + +N+ HI + + + G G K+ SL+F + F +++
Sbjct: 233 HDNNMEVIEDNDMAHITCGSGSMSQGKSGMKNSKSLFFSSDIGFCVHEL 281
>pdb|1LNA|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
Length = 316
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 36 DHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG 95
+ +TP + + S+ P A +G Y + + + +NS + A YL SQG
Sbjct: 190 EDVYTPGISGDSLRSMSDP--AKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQG 247
Query: 96 HNHHEVDIEFLGNNEGKHIYISA 118
H+ V + +G ++ I+ A
Sbjct: 248 GTHYGVSVVGIGRDKLGKIFYRA 270
>pdb|1TLP|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|1TMN|E Chain E, Binding Of N-Carboxymethyl Dipeptide Inhibitors To
Thermolysin Determined By X-Ray Crystallography. A Novel
Class Of Transition- State Analogues For Zinc Peptidases
pdb|2TMN|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|4TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|5TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|6TMN|E Chain E, Structures Of Two Thermolysin-inhibitor Complexes That
Differ By A Single Hydrogen Bond
pdb|8TLN|E Chain E, Structural Comparison Suggests That Thermolysin And
Related Neutral Proteases Undergo Hinge-Bending Motion
During Catalysis
pdb|1LNE|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNF|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNB|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNC|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LND|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|1OS0|A Chain A, Thermolysin With An Alpha-Amino Phosphinic Inhibitor
pdb|1PE5|A Chain A, Thermolysin With Tricyclic Inhibitor
pdb|1PE7|A Chain A, Thermolysin With Bicyclic Inhibitor
pdb|1PE8|A Chain A, Thermolysin With Monocyclic Inhibitor
pdb|1ZDP|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (S)-Thiorphan
pdb|2A7G|E Chain E, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Z|A Chain A, Anomalous Substructure Of Thermolysin
pdb|1HYT|A Chain A, Re-Determination And Refinement Of The Complex Of
Benzylsuccinic Acid With Thermolysin And Its Relation To
The Complex With Carboxypeptidase A
pdb|1THL|A Chain A, Thermolysin Complexed With A Novel Glutaramide Derivative,
N-(1-(2(r, S)-carboxy-4-phenylbutyl)
Cyclopentylcarbonyl)-(s)-tryptophan
pdb|4TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|5TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|7TLN|A Chain A, Structural Analysis Of The Inhibition Of Thermolysin By An
Active- Site-directed Irreversible Inhibitor
pdb|3EIM|A Chain A, Metal Exchange In Thermolysin
pdb|3F28|A Chain A, Thermolysin Inhibition
pdb|3F2P|A Chain A, Thermolysin Inhibition
pdb|3FCQ|A Chain A, Thermolysin Inhibition
pdb|3FOR|A Chain A, Thermolysin Complexed With Bnpa (2-Benzyl-3-Nitro
Propanoic Acid Amide)
pdb|3P7P|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure A
(0.1 Mgy)
pdb|3P7Q|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure B
(2.5 Mgy)
pdb|3P7R|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure C
(4.9 Mgy)
pdb|3P7S|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure D
(7.2 Mgy)
pdb|3P7T|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure A
(0.1 Mgy)
pdb|3P7U|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure B
(2.4 Mgy)
pdb|3P7V|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure C
(4.8 Mgy)
pdb|3P7W|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure D
(7.1 Mgy)
pdb|1GXW|A Chain A, The 2.2 A Resolution Structure Of Thermolysin Crystallized
In Presence Of Potassium Thiocyanate
pdb|3T2H|E Chain E, Tetragonal Thermolysin In The Presence Of Tmao
pdb|3T2I|E Chain E, Tetragonal Thermolysin In The Presence Of Sarcosine
pdb|3T2J|E Chain E, Tetragonal Thermolysin In The Presence Of Betaine
pdb|3TMN|E Chain E, The Binding Of L-Valyl-L-Tryptophan To Crystalline
Thermolysin Illustrates The Mode Of Interaction Of A
Product Of Peptide Hydrolysis
Length = 316
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 36 DHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG 95
+ +TP + + S+ P A +G Y + + + +NS + A YL SQG
Sbjct: 190 EDVYTPGISGDSLRSMSDP--AKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQG 247
Query: 96 HNHHEVDIEFLGNNEGKHIYISA 118
H+ V + +G ++ I+ A
Sbjct: 248 GTHYGVSVVGIGRDKLGKIFYRA 270
>pdb|1Z9G|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (R)-Retro-Thiorphan
Length = 316
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 36 DHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG 95
+ +TP + + S+ P A +G Y + + + +NS + A YL SQG
Sbjct: 190 EDVYTPGISGDSLRSMSDP--AKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQG 247
Query: 96 HNHHEVDIEFLGNNEGKHIYISA 118
H+ V + +G ++ I+ A
Sbjct: 248 GTHYGVSVVGIGRDKLGKIFYRA 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,250,716
Number of Sequences: 62578
Number of extensions: 397847
Number of successful extensions: 1075
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 40
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)