Query 045781
Match_columns 262
No_of_seqs 253 out of 1189
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.3E-78 2.8E-83 559.4 28.8 256 3-261 4-288 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 6.7E-76 1.4E-80 536.1 28.8 235 21-259 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.6E-34 3.5E-39 254.9 21.0 155 29-198 10-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 2.9E-28 6.3E-33 214.4 20.7 154 29-197 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 2.2E-28 4.8E-33 208.0 15.4 151 26-183 2-184 (185)
6 cd00413 Glyco_hydrolase_16 gly 99.9 1.7E-23 3.8E-28 180.9 20.1 155 30-196 24-209 (210)
7 cd08023 GH16_laminarinase_like 99.9 1.1E-20 2.5E-25 167.4 17.5 154 30-196 32-234 (235)
8 cd02177 GH16_kappa_carrageenas 99.8 5.7E-20 1.2E-24 168.8 17.8 118 35-156 43-206 (269)
9 COG2273 SKN1 Beta-glucanase/Be 99.8 4.6E-20 1E-24 175.2 14.6 137 27-169 70-238 (355)
10 cd02178 GH16_beta_agarase Beta 99.8 1.9E-19 4.1E-24 163.1 17.8 119 32-156 54-196 (258)
11 PF06955 XET_C: Xyloglucan end 99.8 4.2E-21 9.1E-26 135.5 4.2 46 213-259 5-51 (51)
12 cd08024 GH16_CCF Coelomic cyto 99.8 6.2E-17 1.3E-21 152.4 19.4 107 56-166 101-231 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.7 1.2E-16 2.6E-21 150.1 14.0 107 56-166 98-226 (321)
14 cd02182 GH16_Strep_laminarinas 99.7 2.4E-15 5.2E-20 136.4 15.3 118 32-156 42-193 (259)
15 cd02180 GH16_fungal_KRE6_gluca 99.6 1.1E-14 2.3E-19 135.6 12.8 77 30-110 35-142 (295)
16 cd02181 GH16_fungal_Lam16A_glu 98.7 2.3E-08 4.9E-13 93.3 6.3 105 42-156 47-195 (293)
17 PF03935 SKN1: Beta-glucan syn 97.9 8.1E-05 1.8E-09 74.2 10.0 55 36-94 161-226 (504)
18 PF10287 DUF2401: Putative TOS 32.7 1.6E+02 0.0034 27.3 6.6 62 83-150 120-205 (235)
19 PF08134 cIII: cIII protein fa 22.5 67 0.0015 21.9 1.8 16 74-91 2-17 (44)
20 KOG2834 Nuclear pore complex, 21.9 76 0.0016 32.2 2.8 39 62-106 199-239 (510)
21 PRK11546 zraP zinc resistance 20.9 65 0.0014 27.5 1.8 25 215-240 35-59 (143)
22 PF05021 NPL4: NPL4 family; I 20.6 78 0.0017 30.1 2.5 37 64-106 3-41 (306)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.3e-78 Score=559.40 Aligned_cols=256 Identities=39% Similarity=0.734 Sum_probs=229.4
Q ss_pred hhhHHHHH--hccceeeeeccCCccccCceeeeeCCCeEEcCCCcEEEEEEeCCCCceeEEeeEEEEEEeeeEEEEEec-
Q 045781 3 LISRLLAF--FGGLFASRIISDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIP- 79 (262)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~y~yG~~e~~a~mKl~- 79 (262)
|+++||+| .+|++--+. +..+|.++|.+.|+.+|+.+.++|+.|+|+||+.+|++|+||.+|+||+|| |+||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E--~riKLp~ 80 (291)
T PLN03161 4 LKTLLVALFAALAAFDRSF-VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIE--MLIKLVP 80 (291)
T ss_pred HHHHHHHHHHHHHhcCCCc-ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEE--EEEEeCC
Confidence 44455543 356555544 677899999999999999998888899999999999999999999999999 999999
Q ss_pred CCCCceEEEEEEeeCCCCCCceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE---
Q 045781 80 VNSAGVVTACYLTSQGHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF--- 156 (262)
Q Consensus 80 g~s~GvVtAf~l~s~~~~~dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f--- 156 (262)
|+++|+||||||++.++.||||||||||+++|+|++||||+|.+|.++|++++.++|||+++||+|+|+|+|++|+|
T Consensus 81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD 160 (291)
T PLN03161 81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD 160 (291)
T ss_pred CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence 88899999999999777899999999999999999999999999999999999999999999999999999999999
Q ss_pred -------eec-----------c-ceEeecccC-CcCCCCcceeecCCCCCeEEEEceEEEeeeeeCCCCCCCCCcC--Cc
Q 045781 157 -------HEL-----------E-EIEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYA--SH 214 (262)
Q Consensus 157 -------~n~-----------~-~i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v~~C~~~~~~~~~~C~~--~~ 214 (262)
+|. + .|++|||+| +|||+||++||||++|||+|.|++|.++||.+++......|.+ +.
T Consensus 161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~ 240 (291)
T PLN03161 161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPS 240 (291)
T ss_pred CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcc
Confidence 221 1 199999999 9999999999999999999999999999999865311146975 46
Q ss_pred ccccccccccCCHHHHHHHHHHhhcCeeEecCcCCCCCCC-CCCCccC
Q 045781 215 YWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPR-PPTECQY 261 (262)
Q Consensus 215 ~ww~~~~~~~l~~~q~~~~~~v~~~~m~YdYC~D~~R~p~-~p~EC~~ 261 (262)
.||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.+
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~ 288 (291)
T PLN03161 241 NWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFK 288 (291)
T ss_pred ccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence 7999999999999999999999999999999999999998 7999965
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.7e-76 Score=536.10 Aligned_cols=235 Identities=52% Similarity=0.994 Sum_probs=218.9
Q ss_pred cCCccccCceeeeeCCCeEEcCCCcEEEEEEeCCCCceeEEeeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC-CCC
Q 045781 21 SDVSFDQNYYITWGYDHFWTPNQGREVVLSLCYPSGAGFGSKLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG-HNH 98 (262)
Q Consensus 21 ~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~-~~~ 98 (262)
.+++|.++|.++|+++||++.++|+.|+|+||+++|++|+||..|+||+|| ||||+| |+++|+|+||||++++ +.|
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E--~riKlp~g~s~G~~pAFwl~~~~wp~~ 79 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFS--MRIKLPPGDSAGTVTAFYLSSQGPDNH 79 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEE--EEEEeCCCCCCCeEEEEEECCCCCCCC
Confidence 356799999999999999999888999999999999999999999999999 999999 8789999999999998 889
Q ss_pred CceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE----------eec---------
Q 045781 99 HEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF----------HEL--------- 159 (262)
Q Consensus 99 dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f----------~n~--------- 159 (262)
|||||||||+++|+|+++|||+|.+|.++|++++.++|||+++||+|+|+|+|++|+| +|.
T Consensus 80 ~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 159 (263)
T cd02176 80 DEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPS 159 (263)
T ss_pred CeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999 221
Q ss_pred --cc-eEeecccC-CcCCCCcceeecCCCCCeEEEEceEEEeeeeeCCCCCCCCCcC--CcccccccccccCCHHHHHHH
Q 045781 160 --EE-IEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDVARCSVDKSSDMNQCYA--SHYWWNEVRFWELDSNQRRRY 233 (262)
Q Consensus 160 --~~-i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v~~C~~~~~~~~~~C~~--~~~ww~~~~~~~l~~~q~~~~ 233 (262)
+. |+++||+| +|||+||++|+||++|||+|.|++|.|+||.+++. . ..|.. ...||+.+.+++|+++|+++|
T Consensus 160 ~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 237 (263)
T cd02176 160 SQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPG-D-SFSSCSCTEDWWNGSTYQQLSANQQRAM 237 (263)
T ss_pred cceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCC-C-ccccCCCccccccccccccCCHHHHHHH
Confidence 11 99999999 99999999999999999999999999999998764 2 45653 267999999999999999999
Q ss_pred HHHhhcCeeEecCcCCCCCCCCCCCc
Q 045781 234 QNVRRHHMVYDYCSDTHRYPRPPTEC 259 (262)
Q Consensus 234 ~~v~~~~m~YdYC~D~~R~p~~p~EC 259 (262)
+|||+||||||||+|++|||.+||||
T Consensus 238 ~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 238 EWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 99999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.6e-34 Score=254.89 Aligned_cols=155 Identities=23% Similarity=0.392 Sum_probs=133.0
Q ss_pred ceeeeeCCCeEEcCCCcEEEEEEeCC-CCceeEEeeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCCCCCCceEEEEe
Q 045781 29 YYITWGYDHFWTPNQGREVVLSLCYP-SGAGFGSKLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQGHNHHEVDIEFL 106 (262)
Q Consensus 29 ~~~~w~~~~v~~~~~G~~l~L~ld~~-sga~i~Sk~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~~~~dEID~Efl 106 (262)
+.-+...++|.+..+ +|+|+|++. ++++|+|+..|+||+|| ||||+| + +|+|+||||++++ ++|||||++
T Consensus 10 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~i~s~~~f~YG~~E--aR~Klp~g--~G~wpAfWl~~~~--~gEIDIE~~ 81 (203)
T cd02183 10 YDWTVTSGTVDYDDD--GASLTIPKRGDGPTISSTFYIFYGKVE--VTMKAAPG--QGIVSSFVLQSDD--LDEIDWEWV 81 (203)
T ss_pred CccEecCCcEeECCC--eEEEEEcCCCCCCeEEeccEEEeEEEE--EEEEecCC--CeEEEEEEEECCC--CCEEEEEec
Confidence 344556788988643 499999988 68999999999999999 999999 6 8999999999876 899999999
Q ss_pred cCCCCceeEEEEeEEeCCCC---CceEEEeecCCCCcCcEEEEEEeccceeEE----------ee-c-------cc----
Q 045781 107 GNNEGKHIYISANAFTNGIG---GRKHRFSLWFDTTADFHTYQILWNHHQIAF----------HE-L-------EE---- 161 (262)
Q Consensus 107 Gn~~g~p~~vqTNv~~~G~~---~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f----------~n-~-------~~---- 161 (262)
|++ |..+|+|+|.+|.. ++++.+.+.+|++++||+|+|+|+|+.|+| .+ . +.
T Consensus 82 G~~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~ 158 (203)
T cd02183 82 GGD---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMR 158 (203)
T ss_pred CCC---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcE
Confidence 975 46899999987754 466778889999999999999999999999 11 1 11
Q ss_pred eEeecccC-C---------cCCCCcceeecCCCCCeEEEEceEEEee
Q 045781 162 IEASLWNA-S---------WATDGGRMQISWSYAPFEARYRGFDVAR 198 (262)
Q Consensus 162 i~~siW~~-~---------WAt~GG~~~~dw~~aPF~a~~~~~~v~~ 198 (262)
|++++|.| + || || ++||+.+||+|.|+.|+|..
T Consensus 159 l~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 159 LQIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEe
Confidence 99999998 3 99 78 79999999999999999864
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=99.96 E-value=2.9e-28 Score=214.38 Aligned_cols=154 Identities=30% Similarity=0.583 Sum_probs=129.8
Q ss_pred ceeeeeCCCeEEcCCCcEEEEEEeCC-------CCceeEEeeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC---CC
Q 045781 29 YYITWGYDHFWTPNQGREVVLSLCYP-------SGAGFGSKLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG---HN 97 (262)
Q Consensus 29 ~~~~w~~~~v~~~~~G~~l~L~ld~~-------sga~i~Sk~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~---~~ 97 (262)
..++|.++||.+. +| .|+|++.+. ++++|.|+.+|.||+|| ||||+| + +|+|+||||+++. ..
T Consensus 25 ~~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~e--ar~k~~~~--~G~~~Afwl~~~~~~~~~ 98 (212)
T cd02175 25 FNCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYE--VRMKPAKG--SGVVSSFFTYTGPYDGDP 98 (212)
T ss_pred EeeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEE--EEEEcCCC--CeEEEEEEEEecCCCCCC
Confidence 4468899999996 55 588998654 37899999999999999 999999 6 8999999999742 45
Q ss_pred CCceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecCCCCcCcEEEEEEeccceeEE--------e-ec-----cc--
Q 045781 98 HHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWFDTTADFHTYQILWNHHQIAF--------H-EL-----EE-- 161 (262)
Q Consensus 98 ~dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f--------~-n~-----~~-- 161 (262)
++|||||++|++. ..+|+|+|.+|.++++..+.+.+|++++||+|+|+|+|++|+| + +. +.
T Consensus 99 ~~EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~~~~p~~p 175 (212)
T cd02175 99 HDEIDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATDPNIPDTP 175 (212)
T ss_pred CCEEEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCccCCCCCCC
Confidence 8999999999865 4789999998887777788889999999999999999999999 1 11 11
Q ss_pred --eEeecccC----CcCCCCcceeecCCCCCeEEEEceEEEe
Q 045781 162 --IEASLWNA----SWATDGGRMQISWSYAPFEARYRGFDVA 197 (262)
Q Consensus 162 --i~~siW~~----~WAt~GG~~~~dw~~aPF~a~~~~~~v~ 197 (262)
|++++|.+ +|+ | ++|. ..|++|.++.|++.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999987 598 4 5676 89999999999873
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.96 E-value=2.2e-28 Score=208.00 Aligned_cols=151 Identities=32% Similarity=0.584 Sum_probs=128.4
Q ss_pred ccCceeeeeCCCeEEcCCCcEEEEEEeC-----CCCceeEEeeEEEEEEeeeEEEEEecCCCCceEEEEEEeeCC--CCC
Q 045781 26 DQNYYITWGYDHFWTPNQGREVVLSLCY-----PSGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG--HNH 98 (262)
Q Consensus 26 ~~~~~~~w~~~~v~~~~~G~~l~L~ld~-----~sga~i~Sk~~y~yG~~e~~a~mKl~g~s~GvVtAf~l~s~~--~~~ 98 (262)
.+.+.++|+++||.+.++ ..|+|++++ .++++|+|+..+.||+|| ||||+| ...|+++||||++.+ +.+
T Consensus 2 ~~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~e--ar~k~~-~~~G~~~afwl~~~~~~~~~ 77 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFE--ARIKAP-PGPGVWPAFWLTGADGWPDG 77 (185)
T ss_dssp CCTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEE--EEEECS-CSTTEEEEEEEETTGSTTTT
T ss_pred CCceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEE--EEEEec-CCCceEecccccccccccch
Confidence 356899999999999654 479999988 578999999999999999 999999 238999999997532 678
Q ss_pred CceEEEEecCCCCceeEEEEeEEeCCCCCc--eEEEeecCCCCcCcEEEEEEeccceeEE-----------ee------c
Q 045781 99 HEVDIEFLGNNEGKHIYISANAFTNGIGGR--KHRFSLWFDTTADFHTYQILWNHHQIAF-----------HE------L 159 (262)
Q Consensus 99 dEID~EflGn~~g~p~~vqTNv~~~G~~~r--e~~~~l~fDpt~dFHtY~i~Wt~~~I~f-----------~n------~ 159 (262)
+|||||++|++++ .+++|+|.++.++. ++++.+.+|++.+||+|+|+|+|++|+| .. .
T Consensus 78 ~EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~ 154 (185)
T PF00722_consen 78 GEIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPY 154 (185)
T ss_dssp EEEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCS
T ss_pred hhhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccC
Confidence 9999999999765 69999999988765 6778889999999999999999999999 01 1
Q ss_pred cc-----eEeecccC-CcCCCCcceeecCC
Q 045781 160 EE-----IEASLWNA-SWATDGGRMQISWS 183 (262)
Q Consensus 160 ~~-----i~~siW~~-~WAt~GG~~~~dw~ 183 (262)
+. |.+++|.+ +|++..|++.|||-
T Consensus 155 P~~~~~~~~~~~w~~~~~~~~~~~m~vDwv 184 (185)
T PF00722_consen 155 PFSTPMNLALGLWPGGDWAGPAGEMEVDWV 184 (185)
T ss_dssp SEEEEEEEEEEECEBTTTHSSECEEEEEEE
T ss_pred cccceeEEEEccccCCCCCCCCCEEEEEeE
Confidence 11 88889999 99988888888883
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.92 E-value=1.7e-23 Score=180.92 Aligned_cols=155 Identities=29% Similarity=0.431 Sum_probs=124.4
Q ss_pred eeeeeCCCeEEcCCCcEEEEEEeCC------CCceeEE-eeEEEEEEeeeEEEEEecCCCCceEEEEEEeeCC---CCCC
Q 045781 30 YITWGYDHFWTPNQGREVVLSLCYP------SGAGFGS-KLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG---HNHH 99 (262)
Q Consensus 30 ~~~w~~~~v~~~~~G~~l~L~ld~~------sga~i~S-k~~y~yG~~e~~a~mKl~g~s~GvVtAf~l~s~~---~~~d 99 (262)
...|.++||.+.++| .|.|++.+. ++++|.| +..|.||+|| +|||+| +..|+|+||||++++ +..+
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~e--ar~k~~-~~~G~~~afw~~~~~~~~~~~~ 99 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYE--ARAKLA-GGPGAVSAFWTYSDDDDPPDGG 99 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEE--EEEEcC-CCCceEEEEEEeCCCCCCCCCC
Confidence 567899999997657 699998654 4689999 9999999999 999999 239999999999986 5699
Q ss_pred ceEEEEecCCCCceeEEEEeEEeCCCC-----CceEEEeecCCCCcCcEEEEEEeccceeEEe----------e----cc
Q 045781 100 EVDIEFLGNNEGKHIYISANAFTNGIG-----GRKHRFSLWFDTTADFHTYQILWNHHQIAFH----------E----LE 160 (262)
Q Consensus 100 EID~EflGn~~g~p~~vqTNv~~~G~~-----~re~~~~l~fDpt~dFHtY~i~Wt~~~I~f~----------n----~~ 160 (262)
|||||++|+++ ..+++|+|..+.+ .....+.+.+++.++||+|+|+|+|+.|+|. + .+
T Consensus 100 EIDiE~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~~p~~p 176 (210)
T cd00413 100 EIDIEFLGRDP---TTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQVPDDP 176 (210)
T ss_pred eEEEEecccCC---CeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCCCCCCC
Confidence 99999999863 5789999976643 3345566778889999999999999999991 1 11
Q ss_pred -ceEeecccC-CcCCCCcceeecCCCCCeEEEEceEEE
Q 045781 161 -EIEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDV 196 (262)
Q Consensus 161 -~i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v 196 (262)
.|++++|.+ +|+.. .+....|..+.+..|+|
T Consensus 177 ~~i~ln~~~~~~~~~~-----~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 177 MNIILNLWSDGGWWWG-----GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred cEEEEEEEECCCCccc-----CCCCCCCcEEEEEEEEE
Confidence 199999998 66631 34467888899888875
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.86 E-value=1.1e-20 Score=167.41 Aligned_cols=154 Identities=21% Similarity=0.339 Sum_probs=113.5
Q ss_pred eeeeeCCCeEEcCCCcEEEEEEeCC----------CCceeEE--eeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC-
Q 045781 30 YITWGYDHFWTPNQGREVVLSLCYP----------SGAGFGS--KLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG- 95 (262)
Q Consensus 30 ~~~w~~~~v~~~~~G~~l~L~ld~~----------sga~i~S--k~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~- 95 (262)
...+.++||.+. +| .|.|+..+. .++.|.| +..|.||+|| ||||+| + .|+++||||++++
T Consensus 32 ~~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E--~r~k~~~~--~G~~pafWl~~~~~ 105 (235)
T cd08023 32 YYTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVE--ARAKLPKG--QGTWPAFWMLGENI 105 (235)
T ss_pred EEeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEE--EEEEccCC--CCceeEEEEcCCCC
Confidence 346678899884 66 588887543 2568999 8899999999 999999 5 8999999999864
Q ss_pred -----CCCCceEE-EEecCCCCceeEEEEeEEeCCCC----CceEEEeecC-CCCcCcEEEEEEeccceeEEeec-----
Q 045781 96 -----HNHHEVDI-EFLGNNEGKHIYISANAFTNGIG----GRKHRFSLWF-DTTADFHTYQILWNHHQIAFHEL----- 159 (262)
Q Consensus 96 -----~~~dEID~-EflGn~~g~p~~vqTNv~~~G~~----~re~~~~l~f-Dpt~dFHtY~i~Wt~~~I~f~n~----- 159 (262)
+..+|||| |++|+.+ ..+++|+|..+.. ..+..+.+.. +++++||+|+++|+|++|+|.-+
T Consensus 106 ~~~~w~~~~EIDI~E~~g~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~ 182 (235)
T cd08023 106 KYVGWPASGEIDIMEYVGNEP---NTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYF 182 (235)
T ss_pred CCCCCCCCCcceeEecCCCCC---CeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEE
Confidence 34789995 9999863 4789999977643 2344566665 78999999999999999999110
Q ss_pred -----------------c-ceEeecccC-CcCCCCcceeecCCCCCeEEEEceEEE
Q 045781 160 -----------------E-EIEASLWNA-SWATDGGRMQISWSYAPFEARYRGFDV 196 (262)
Q Consensus 160 -----------------~-~i~~siW~~-~WAt~GG~~~~dw~~aPF~a~~~~~~v 196 (262)
+ .|.++++.+ +|+ |. ...-...|..+.+..|+|
T Consensus 183 ~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 183 TYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRV 234 (235)
T ss_pred EEcccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEE
Confidence 1 177777776 777 21 122234566666666654
No 8
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.85 E-value=5.7e-20 Score=168.84 Aligned_cols=118 Identities=23% Similarity=0.253 Sum_probs=86.3
Q ss_pred CCCeEEcCCCcEEEEEEeCC-------------------CCceeEEeeEEEEEEeeeEEEEEecCCCCceEEEEEEeeC-
Q 045781 35 YDHFWTPNQGREVVLSLCYP-------------------SGAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQ- 94 (262)
Q Consensus 35 ~~~v~~~~~G~~l~L~ld~~-------------------sga~i~Sk~~y~yG~~e~~a~mKl~g~s~GvVtAf~l~s~- 94 (262)
.+||.+ .+| .|.|+..+. +++.++|+..|.||+|| ||||++...+|+++||||+++
T Consensus 43 ~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~E--aRik~~p~~~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYE--ARIKGADIFPGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEE--EEEECCCCCCceEeEEEEeccC
Confidence 467777 577 588887542 45678999999999999 999975113899999999984
Q ss_pred --------CCCCCceEE-EEecCC---CCcee----EEEEeEEeCCCCC----------ceEEEeecCCCCcCcEEEEEE
Q 045781 95 --------GHNHHEVDI-EFLGNN---EGKHI----YISANAFTNGIGG----------RKHRFSLWFDTTADFHTYQIL 148 (262)
Q Consensus 95 --------~~~~dEID~-EflGn~---~g~p~----~vqTNv~~~G~~~----------re~~~~l~fDpt~dFHtY~i~ 148 (262)
.|.++|||| |.+|.. .+++. .+|++++.+|.+. ..+.+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 256899995 666543 12333 3555555555431 123466789999999999999
Q ss_pred eccceeEE
Q 045781 149 WNHHQIAF 156 (262)
Q Consensus 149 Wt~~~I~f 156 (262)
|+|++|+|
T Consensus 199 W~~~~i~~ 206 (269)
T cd02177 199 VNQDEIIW 206 (269)
T ss_pred EeCCEEEE
Confidence 99999999
No 9
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.6e-20 Score=175.25 Aligned_cols=137 Identities=24% Similarity=0.377 Sum_probs=114.3
Q ss_pred cCceeeeeCCCeEEcCCCcEEEEEEeC-------CCCceeEEeeE--EEEEEeeeEEEEEec-CCCCceEEEEEEeeC--
Q 045781 27 QNYYITWGYDHFWTPNQGREVVLSLCY-------PSGAGFGSKLL--YGSGFFYFRFRMKIP-VNSAGVVTACYLTSQ-- 94 (262)
Q Consensus 27 ~~~~~~w~~~~v~~~~~G~~l~L~ld~-------~sga~i~Sk~~--y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~-- 94 (262)
...++.|...++.+..+| .+.|.+++ +++++++|..+ |+||++| +|||+| + +|+|+||||+++
T Consensus 70 ~~~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~E--vrak~~~~--~G~wpafw~~~g~~ 144 (355)
T COG2273 70 ATKNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYE--VRAKLPLV--SGLWPAFWTLTGLS 144 (355)
T ss_pred cccccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEE--EEeccCCC--cccceeeEeccCcc
Confidence 345667888888886666 68888764 45788999887 9999999 999999 5 999999999985
Q ss_pred --CCCCCceEEEEecCCCCceeEEEEeEEeCCCCCceEEEeecC-CCCcCcEEEEEEeccceeEEee------------c
Q 045781 95 --GHNHHEVDIEFLGNNEGKHIYISANAFTNGIGGRKHRFSLWF-DTTADFHTYQILWNHHQIAFHE------------L 159 (262)
Q Consensus 95 --~~~~dEID~EflGn~~g~p~~vqTNv~~~G~~~re~~~~l~f-Dpt~dFHtY~i~Wt~~~I~f~n------------~ 159 (262)
+..++|||+|+||+++. +..+|||.+.++.++.+....+.+ |..++||+|.++|.++.|+|.. .
T Consensus 145 ~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p~~ 223 (355)
T COG2273 145 RDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKPDY 223 (355)
T ss_pred cCCCCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecccc
Confidence 35689999999998774 345999999999998888888888 9999999999999999999911 1
Q ss_pred -c----ceEeecccC
Q 045781 160 -E----EIEASLWNA 169 (262)
Q Consensus 160 -~----~i~~siW~~ 169 (262)
+ .+++++|.+
T Consensus 224 ~~~~p~y~~~nl~~~ 238 (355)
T COG2273 224 IPQIPFYVLVNLWMG 238 (355)
T ss_pred CcCCcceeEEeeccc
Confidence 1 189999988
No 10
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.83 E-value=1.9e-19 Score=163.10 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=90.7
Q ss_pred eeeCCCeEEcCCCcEEEEEEeCCC-----------CceeEEeeEEEEEEeeeEEEEEecCCCCceEEEEEEeeCC-CCCC
Q 045781 32 TWGYDHFWTPNQGREVVLSLCYPS-----------GAGFGSKLLYGSGFFYFRFRMKIPVNSAGVVTACYLTSQG-HNHH 99 (262)
Q Consensus 32 ~w~~~~v~~~~~G~~l~L~ld~~s-----------ga~i~Sk~~y~yG~~e~~a~mKl~g~s~GvVtAf~l~s~~-~~~d 99 (262)
.+.++||.+. +| .|.|+..+.. ++.|.|+..+.||+|| ||||+|. .++++||||++++ +.++
T Consensus 54 ~y~~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~E--aR~K~p~--~~~~pAfW~~~~~~~~~g 127 (258)
T cd02178 54 EFSADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFE--ARAKASN--LPMSSAFWLLSDTKDSTT 127 (258)
T ss_pred eEccCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEE--EEEEcCC--CCccceEEEccCCCCCCC
Confidence 3456788874 67 5888886543 5789999999999999 9999993 2357999999863 5799
Q ss_pred ceE-EEEecCCC--CceeEEEEeEEeCCCC-----Cc---eEEEeecCCCCcCcEEEEEEec-cceeEE
Q 045781 100 EVD-IEFLGNNE--GKHIYISANAFTNGIG-----GR---KHRFSLWFDTTADFHTYQILWN-HHQIAF 156 (262)
Q Consensus 100 EID-~EflGn~~--g~p~~vqTNv~~~G~~-----~r---e~~~~l~fDpt~dFHtY~i~Wt-~~~I~f 156 (262)
||| ||++|++. ..+..+|+|+|.-+.+ .+ ...+.+.+|++++||+|+++|+ |++|+|
T Consensus 128 EIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~f 196 (258)
T cd02178 128 EIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRF 196 (258)
T ss_pred cEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEE
Confidence 999 69999863 2245789998643221 11 2345567788999999999999 999999
No 11
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.83 E-value=4.2e-21 Score=135.49 Aligned_cols=46 Identities=52% Similarity=1.102 Sum_probs=39.6
Q ss_pred CcccccccccccCCHHHHHHHHHHhhcCeeEecCcCCCCCCCC-CCCc
Q 045781 213 SHYWWNEVRFWELDSNQRRRYQNVRRHHMVYDYCSDTHRYPRP-PTEC 259 (262)
Q Consensus 213 ~~~ww~~~~~~~l~~~q~~~~~~v~~~~m~YdYC~D~~R~p~~-p~EC 259 (262)
+..||+++.++ |+++|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 5 ~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 5 SKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 56799998888 9999999999999999999999999999987 9999
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.76 E-value=6.2e-17 Score=152.43 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=75.5
Q ss_pred CceeEE--eeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC------CCCCceE-EEEecCCCCce-------eEEEE
Q 045781 56 GAGFGS--KLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG------HNHHEVD-IEFLGNNEGKH-------IYISA 118 (262)
Q Consensus 56 ga~i~S--k~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~------~~~dEID-~EflGn~~g~p-------~~vqT 118 (262)
.+.|.| |..|.||+|| +|||+| | .|+||||||++.+ |..+||| ||..|+....+ ..|+.
T Consensus 101 Sgri~T~~kf~f~YGrvE--~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~ 176 (330)
T cd08024 101 SARLRTKNSFSFKYGRVE--VRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGS 176 (330)
T ss_pred EEEEEeCCccceeceEEE--EEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEE
Confidence 456777 5779999999 999999 7 8999999999863 5678999 79999864321 24666
Q ss_pred eEEeCCC-C---Cce---EEEeecCCCCcCcEEEEEEeccceeEEeeccceEeec
Q 045781 119 NAFTNGI-G---GRK---HRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASL 166 (262)
Q Consensus 119 Nv~~~G~-~---~re---~~~~l~fDpt~dFHtY~i~Wt~~~I~f~n~~~i~~si 166 (262)
++|.... . .+. .......+.+++||+|+++|+|++|+|..+..++.++
T Consensus 177 tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v 231 (330)
T cd08024 177 TLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTL 231 (330)
T ss_pred EEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEE
Confidence 6764221 1 111 1112234667899999999999999995444344333
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.71 E-value=1.2e-16 Score=150.08 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=70.5
Q ss_pred CceeEEe--eEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCC-------CCCCceE-EEEecCCCCc---eeEEEEeEE
Q 045781 56 GAGFGSK--LLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQG-------HNHHEVD-IEFLGNNEGK---HIYISANAF 121 (262)
Q Consensus 56 ga~i~Sk--~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~-------~~~dEID-~EflGn~~g~---p~~vqTNv~ 121 (262)
.|+|.|+ ..|.||||| +|+||| | .|+||||||++.+ |..+||| ||.+||..-. ...+.+.+|
T Consensus 98 Sari~Tk~~f~f~YGrvE--vRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~ 173 (321)
T cd02179 98 SARINTKNSFAFKYGRVE--IRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLY 173 (321)
T ss_pred eeeEEECCcEeEeccEEE--EEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEE
Confidence 4678884 678999999 999999 8 8999999999863 4579999 6999986310 011112222
Q ss_pred eC----CCC-Cce---EEEeecCCCCcCcEEEEEEeccceeEEeeccceEeec
Q 045781 122 TN----GIG-GRK---HRFSLWFDTTADFHTYQILWNHHQIAFHELEEIEASL 166 (262)
Q Consensus 122 ~~----G~~-~re---~~~~l~fDpt~dFHtY~i~Wt~~~I~f~n~~~i~~si 166 (262)
.. ... .+. .......+.+++||+|+++|+|++|+|.-+..++.++
T Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~ 226 (321)
T cd02179 174 GGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEI 226 (321)
T ss_pred cccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEE
Confidence 21 111 011 0111134567999999999999999994443344443
No 14
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.66 E-value=2.4e-15 Score=136.36 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=79.0
Q ss_pred eeeCCCeEEcCCCcEEEEEEeCC-----CCceeEEeeEEEE------EEeeeEEEEEec-C---CCCceEEEEEEeeCC-
Q 045781 32 TWGYDHFWTPNQGREVVLSLCYP-----SGAGFGSKLLYGS------GFFYFRFRMKIP-V---NSAGVVTACYLTSQG- 95 (262)
Q Consensus 32 ~w~~~~v~~~~~G~~l~L~ld~~-----sga~i~Sk~~y~y------G~~e~~a~mKl~-g---~s~GvVtAf~l~s~~- 95 (262)
+.+.+|+.+..+| .|.|+..+. ++++|.|+..+.+ |+|| ||||+| + ...|+|+||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~E--aRik~p~~~~~~~~G~wPAfWll~~~~ 118 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVE--ASIRLGDVPGSNQQGIWPAFWMLGDSY 118 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEE--EEEECCCCcccCCCCcCeeeeccCCCc
Confidence 4556899886577 577776543 3467888765433 4899 999999 3 147999999999863
Q ss_pred -------CCCCceE-EEEecCCCCceeEEEEeEEeCC---CCCceEEEee--cCCCCcCcEEEEEEecc-----ceeEE
Q 045781 96 -------HNHHEVD-IEFLGNNEGKHIYISANAFTNG---IGGRKHRFSL--WFDTTADFHTYQILWNH-----HQIAF 156 (262)
Q Consensus 96 -------~~~dEID-~EflGn~~g~p~~vqTNv~~~G---~~~re~~~~l--~fDpt~dFHtY~i~Wt~-----~~I~f 156 (262)
|..+||| ||..|... ...+ ++|... ...++..-.. ...+.++||+|+++|++ ++|+|
T Consensus 119 ~~~~~~WP~~GEIDImE~~~~~~---~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~ 193 (259)
T cd02182 119 RGNGTNWPACGELDIMENVNGLS---TGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRW 193 (259)
T ss_pred cCCCCCCCccceeeeeeccCCCC---ceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEE
Confidence 4468999 69998643 3334 454322 1111111101 11245899999999997 99999
No 15
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.59 E-value=1.1e-14 Score=135.62 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=58.6
Q ss_pred eeeeeCCCeEEcCCCcEEEEEEeCC-------CCceeEE--eeEEEEEEeeeEEEEEecC--CCCceEEEEEEeeCC---
Q 045781 30 YITWGYDHFWTPNQGREVVLSLCYP-------SGAGFGS--KLLYGSGFFYFRFRMKIPV--NSAGVVTACYLTSQG--- 95 (262)
Q Consensus 30 ~~~w~~~~v~~~~~G~~l~L~ld~~-------sga~i~S--k~~y~yG~~e~~a~mKl~g--~s~GvVtAf~l~s~~--- 95 (262)
...+.++||.+ .+| .|+|+..+. +++.|.| |..|.||+|| ||||+|+ ...|+|+||||+++.
T Consensus 35 ~q~Y~~~nv~v-~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~E--aR~klp~~~~~~G~WPAfWmlg~~~~~ 110 (295)
T cd02180 35 LEWYDPDAVTT-ING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIE--ASASLPGKPDVSGLWPAVWTMGNLGRP 110 (295)
T ss_pred eEEecCcCeEe-cCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEE--EEEECCCCCCCCCcceeeecccccccc
Confidence 34566788887 467 588887542 4578888 6789999999 9999992 258999999999842
Q ss_pred ----------C------CCCceE-EEEecCCC
Q 045781 96 ----------H------NHHEVD-IEFLGNNE 110 (262)
Q Consensus 96 ----------~------~~dEID-~EflGn~~ 110 (262)
| ..+||| ||.+|.+.
T Consensus 111 ~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~ 142 (295)
T cd02180 111 GYLATTEGVWPYSYDGRGAPEIDIIEAQVGNG 142 (295)
T ss_pred cccccccCCCCcccccCCCCcEEEEeeecCCC
Confidence 2 138999 79998643
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=98.70 E-value=2.3e-08 Score=93.33 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=73.8
Q ss_pred CCCcEEEEEEeCCC---------CceeEEeeEEEEEEeeeEEEE-Eec-CCCCceEEEEEEeeCC-CCCCceE-EEEecC
Q 045781 42 NQGREVVLSLCYPS---------GAGFGSKLLYGSGFFYFRFRM-KIP-VNSAGVVTACYLTSQG-HNHHEVD-IEFLGN 108 (262)
Q Consensus 42 ~~G~~l~L~ld~~s---------ga~i~Sk~~y~yG~~e~~a~m-Kl~-g~s~GvVtAf~l~s~~-~~~dEID-~EflGn 108 (262)
++| .|.|.+|..+ .++|.||..|.+|+++ +++ |+| + .|+||||||+..+ |..+||| ||.++.
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~--~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~ 121 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFI--ADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNL 121 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEE--EEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCC
Confidence 345 5888887542 3579999999999999 997 999 6 8999999999875 7789999 799976
Q ss_pred CCCceeEEEEeEEeCCC---------C--------------Cce--------EEEeecCCCCcCcEEEEEEeccceeEE
Q 045781 109 NEGKHIYISANAFTNGI---------G--------------GRK--------HRFSLWFDTTADFHTYQILWNHHQIAF 156 (262)
Q Consensus 109 ~~g~p~~vqTNv~~~G~---------~--------------~re--------~~~~l~fDpt~dFHtY~i~Wt~~~I~f 156 (262)
.+ ..+..+|..+. . +.. ..+-..|+ ..+=-.|+++|+++.|.-
T Consensus 122 ~~----~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~v 195 (293)
T cd02181 122 QT----SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKV 195 (293)
T ss_pred CC----ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEE
Confidence 43 34444554210 0 000 11223444 344579999999999974
No 17
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=97.87 E-value=8.1e-05 Score=74.16 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=40.5
Q ss_pred CCeEEcCCCcEEEEEEeCCC-------CceeEE--eeEEEEEEeeeEEEEEec--CCCCceEEEEEEeeC
Q 045781 36 DHFWTPNQGREVVLSLCYPS-------GAGFGS--KLLYGSGFFYFRFRMKIP--VNSAGVVTACYLTSQ 94 (262)
Q Consensus 36 ~~v~~~~~G~~l~L~ld~~s-------ga~i~S--k~~y~yG~~e~~a~mKl~--g~s~GvVtAf~l~s~ 94 (262)
+.|.. .+| .|.|++++.. ++-++| |.-|.-|.+| ++++|| ++.+|+|+|||+|.+
T Consensus 161 ~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e--~~~~lPg~~~~~G~WP~~W~mGN 226 (504)
T PF03935_consen 161 DAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIE--VSASLPGSPDVSGLWPAFWTMGN 226 (504)
T ss_pred CCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEE--EEEECCCCCcCCCcCchhhhccc
Confidence 33443 466 6999998642 344566 5557789999 999999 456899999999853
No 18
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=32.73 E-value=1.6e+02 Score=27.30 Aligned_cols=62 Identities=18% Similarity=0.338 Sum_probs=36.7
Q ss_pred CceEEEEEEeeCC----------------CCCCceE-EEEecCCCCceeEEEEeEEe-CCC-----CCceEEEeecCC-C
Q 045781 83 AGVVTACYLTSQG----------------HNHHEVD-IEFLGNNEGKHIYISANAFT-NGI-----GGRKHRFSLWFD-T 138 (262)
Q Consensus 83 ~GvVtAf~l~s~~----------------~~~dEID-~EflGn~~g~p~~vqTNv~~-~G~-----~~re~~~~l~fD-p 138 (262)
..=.||+||++.- ..++|.| ||.|.... . .+-+.+|. +|. ++.... .|. |
T Consensus 120 ~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~~~~~g~G~~~---yf~RP 193 (235)
T PF10287_consen 120 NYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTDDINGGGGSSD---YFKRP 193 (235)
T ss_pred CCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCccccCCCCCCCC---cccCC
Confidence 4568999998741 2589999 79996533 3 56677765 442 111111 121 5
Q ss_pred CcCcEEEEEEec
Q 045781 139 TADFHTYQILWN 150 (262)
Q Consensus 139 t~dFHtY~i~Wt 150 (262)
+...-++.+.++
T Consensus 194 t~~~~k~aVifd 205 (235)
T PF10287_consen 194 TSGTMKVAVIFD 205 (235)
T ss_pred CCCCeEEEEEEc
Confidence 566666666664
No 19
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=22.50 E-value=67 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=11.6
Q ss_pred EEEEecCCCCceEEEEEE
Q 045781 74 FRMKIPVNSAGVVTACYL 91 (262)
Q Consensus 74 a~mKl~g~s~GvVtAf~l 91 (262)
+.+.++| .||++|||-
T Consensus 2 M~~~laG--~gvmSAyYP 17 (44)
T PF08134_consen 2 MHLQLAG--SGVMSAYYP 17 (44)
T ss_pred eeEEecC--ceeeeeecC
Confidence 4455666 799999984
No 20
>KOG2834 consensus Nuclear pore complex, rNpl4 component (sc Npl4) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=76 Score=32.16 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=30.4
Q ss_pred eeEEEEEEeeeEEEEEec-CCCCceEEEEEEeeCCCCCCceE-EEEe
Q 045781 62 KLLYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQGHNHHEVD-IEFL 106 (262)
Q Consensus 62 k~~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~~~~dEID-~Efl 106 (262)
+.-|+||+|+ =.-.+| | ..++|.|+|=- |.|+|=| +|++
T Consensus 199 R~GflyG~y~--e~~~vPLG-ika~V~aIYEP---PQ~~~~dgl~l~ 239 (510)
T KOG2834|consen 199 RFGFLYGRYT--EHGNVPLG-IKAVVAAIYEP---PQHGEEDGLELL 239 (510)
T ss_pred hcceEEEeec--cccccccc-ceeeEEEEecC---CccCCcCCeEEe
Confidence 4568999999 777778 6 48999999864 4477777 7777
No 21
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.88 E-value=65 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=20.5
Q ss_pred ccccccccccCCHHHHHHHHHHhhcC
Q 045781 215 YWWNEVRFWELDSNQRRRYQNVRRHH 240 (262)
Q Consensus 215 ~ww~~~~~~~l~~~q~~~~~~v~~~~ 240 (262)
.|| +..|..||++|+.+++.++++|
T Consensus 35 G~~-~~~~~~LT~EQQa~~q~I~~~f 59 (143)
T PRK11546 35 GMW-QQNAAPLTTEQQAAWQKIHNDF 59 (143)
T ss_pred CCC-ccccccCCHHHHHHHHHHHHHH
Confidence 455 4567899999999999998876
No 22
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport. Using a diverse set of substrates and direct ubiquitination assays, analysis revealed that HRD4/NPL4 is required for a poorly characterised step in ER-associated degradation following ubiquitination of target proteins but preceding their recognition by the 26S proteasome []. Npl4p physically associates with Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation or even more specific processing [].
Probab=20.64 E-value=78 Score=30.14 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=27.1
Q ss_pred EEEEEEeeeEEEEEec-CCCCceEEEEEEeeCCCCCCceE-EEEe
Q 045781 64 LYGSGFFYFRFRMKIP-VNSAGVVTACYLTSQGHNHHEVD-IEFL 106 (262)
Q Consensus 64 ~y~yG~~e~~a~mKl~-g~s~GvVtAf~l~s~~~~~dEID-~Efl 106 (262)
-|+||+++ -.=+.| | ..-+|-|+|--.+ ++|.| ++++
T Consensus 3 G~LYG~Y~--~~~~vplG-ika~VeaIYEPpQ---~~~~d~~~l~ 41 (306)
T PF05021_consen 3 GFLYGRYE--EYDDVPLG-IKAVVEAIYEPPQ---EGEPDGFTLL 41 (306)
T ss_pred EEEEEEEe--ccCCCCCc-eEEEEEEEECCCc---CCCCCCEEEc
Confidence 48999999 766777 6 3678888886543 56666 6664
Done!