Query 045782
Match_columns 147
No_of_seqs 79 out of 81
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 05:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13398 Peptidase_M50B: Pepti 99.8 2.2E-20 4.8E-25 149.2 4.0 88 43-137 112-199 (200)
2 KOG3073 Protein required for 1 32.8 15 0.00031 31.6 -0.0 45 75-126 187-236 (236)
3 PF03694 Erg28: Erg28 like pro 19.2 21 0.00044 27.1 -1.4 56 71-133 2-57 (111)
4 PF11239 DUF3040: Protein of u 19.1 2.5E+02 0.0054 19.4 4.2 47 96-142 12-63 (82)
5 PF08113 CoxIIa: Cytochrome c 18.9 78 0.0017 19.8 1.4 18 17-34 7-24 (34)
6 PF08997 UCR_6-4kD: Ubiquinol- 14.4 1.8E+02 0.0039 19.9 2.4 36 38-76 10-45 (56)
7 KOG2507 Ubiquitin regulatory p 14.3 96 0.0021 29.3 1.4 20 100-119 59-78 (506)
8 KOG1744 Histone H2B [Chromatin 13.9 36 0.00079 26.7 -1.2 30 79-117 60-89 (127)
9 cd01873 RhoBTB RhoBTB subfamil 13.8 77 0.0017 24.8 0.6 22 99-120 154-178 (195)
10 COG5216 Uncharacterized conser 13.5 82 0.0018 22.3 0.6 28 87-121 3-30 (67)
No 1
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=99.80 E-value=2.2e-20 Score=149.20 Aligned_cols=88 Identities=35% Similarity=0.568 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHHHhhheeecccCcchhheeeeeecccCCCcccceeehhhhhhhhcCCCcHHHHHHHCCCCCCCcc
Q 045782 43 RYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIG 122 (147)
Q Consensus 43 rn~~~~~l~l~fi~lli~~Wfi~~~~~~~~LR~~~LfiGVms~~lYsvwDI~DDlI~Rkvn~SDA~~fA~l~~~~~~s~~ 122 (147)
||+++.+.++++.++++++|+.++ .+.+|++.+|+|+|+ ++|+++|+ ||++.||.|+|||.++||++|+ |+.+
T Consensus 112 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~-~l~~~~~i-~~l~~~~~~~sDa~~la~lt~~--p~~~ 184 (200)
T PF13398_consen 112 RNWFGILVVILFGALLIALWFFAP---PWILRFILLFIGVFL-LLYSVRDI-DDLFRRRVNASDADQLARLTGL--PAWV 184 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-HHHHHcCH-HHHhcCCCCCChHHHHHHHHCC--CHHH
Confidence 999999999999999999999997 899999999999999 99999998 9999999999999999999998 8999
Q ss_pred hhHHHHHHHHHHHHH
Q 045782 123 WGIIWGLISFFFLCG 137 (147)
Q Consensus 123 WGviW~iis~~f~~~ 137 (147)
|+.+|.++|+.++.+
T Consensus 185 W~~~~~~~s~~~l~~ 199 (200)
T PF13398_consen 185 WGLLWLAISLACLAA 199 (200)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 2
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=32.83 E-value=15 Score=31.56 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=29.8
Q ss_pred eeeeeecccCCCcccceeehhhhhhhhc-----CCCcHHHHHHHCCCCCCCcchhHH
Q 045782 75 YIILFIGKCPHCMYDGADIYDDLISRRV-----HSSDAEKFAEVCPCPCNGIGWGII 126 (147)
Q Consensus 75 ~~~LfiGVms~~lYsvwDI~DDlI~Rkv-----n~SDA~~fA~l~~~~~~s~~WGvi 126 (147)
=++.+||.|-|+ ++-+|-..-++ +-|-|..+||.|.. -.-.||++
T Consensus 187 ~~v~~Iga~ahg-----~~~~ey~de~vsiSnYpLSaa~~CsKi~~~--~Ee~wgIi 236 (236)
T KOG3073|consen 187 SVVFVIGAMAHG-----KISVEYVDEKVSISNYPLSAALCCSKITSA--FEEVWGII 236 (236)
T ss_pred CEEEEEeccccc-----ccchhhhhhhcccccCcCcHHHHHHHHHHH--HHHHhccC
Confidence 378999999999 34444444444 44557888888765 44667653
No 3
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=19.16 E-value=21 Score=27.06 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=39.5
Q ss_pred chhheeeeeecccCCCcccceeehhhhhhhhcCCCcHHHHHHHCCCCCCCcchhHHHHHHHHH
Q 045782 71 RILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFF 133 (147)
Q Consensus 71 ~~LR~~~LfiGVms~~lYsvwDI~DDlI~Rkvn~SDA~~fA~l~~~~~~s~~WGviW~iis~~ 133 (147)
+.||+-.+|+|+++ ..=|+=-..|+..+|++-+.+. .+..|- .+|.-| .|.+.|..
T Consensus 2 g~Lp~WLlfVs~~~-~~ns~q~y~~~~~~~~vY~~~~---~~vt~L--~aRtFG-~WTl~s~~ 57 (111)
T PF03694_consen 2 GYLPYWLLFVSVVS-LFNSLQCYFSLSLTRRVYSGKP---KQVTPL--SARTFG-TWTLLSAI 57 (111)
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHhChHHHhhccCCCC---CCCCch--hhhhhH-HHHHHHHH
Confidence 46888999999998 6666666667788888888666 344544 777666 47666543
No 4
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=19.06 E-value=2.5e+02 Score=19.40 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=32.3
Q ss_pred hhhhhhcCCCcHHHHHHHCCCC--CCC---cchhHHHHHHHHHHHHHHHHhh
Q 045782 96 DLISRRVHSSDAEKFAEVCPCP--CNG---IGWGIIWGLISFFFLCGAMYFG 142 (147)
Q Consensus 96 DlI~Rkvn~SDA~~fA~l~~~~--~~s---~~WGviW~iis~~f~~~~i~~G 142 (147)
|-|.|...++|+.--+.+-+.+ .++ ..+|+...+..++.+++|+..+
T Consensus 12 ~eiEr~L~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~ 63 (82)
T PF11239_consen 12 EEIERQLRADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLS 63 (82)
T ss_pred HHHHHHHHhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888987666655521 122 2688888888888888888653
No 5
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=18.92 E-value=78 Score=19.82 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.7
Q ss_pred EeehhhHHHHHHHHHHHH
Q 045782 17 VFLVTVSVCTVVILAVCL 34 (147)
Q Consensus 17 vtl~~i~~y~vvi~~lW~ 34 (147)
=+++++++-++.|+++||
T Consensus 7 Gal~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 7 GALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHHHHH
Confidence 357888888999999994
No 6
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=14.38 E-value=1.8e+02 Score=19.91 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=28.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhheeecccCcchhhee
Q 045782 38 QVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYI 76 (147)
Q Consensus 38 Ha~I~rn~~~~~l~l~fi~lli~~Wfi~~~~~~~~LR~~ 76 (147)
|+.++|||.-.+..-|..+.+...|+-|- --.|+|+
T Consensus 10 ~~~lak~w~ps~~~~G~~~~l~lvy~TDW---klIl~yv 45 (56)
T PF08997_consen 10 YIELAKNWIPSAAAWGAAGGLALVYFTDW---KLILQYV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHTTS
T ss_pred HHHHHHHhchhHHHHhhhhhhheeeecch---Hhhhhhc
Confidence 44457999999999999999999999775 3355554
No 7
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=14.26 E-value=96 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.8
Q ss_pred hhcCCCcHHHHHHHCCCCCC
Q 045782 100 RRVHSSDAEKFAEVCPCPCN 119 (147)
Q Consensus 100 Rkvn~SDA~~fA~l~~~~~~ 119 (147)
=+.+++||.||+.+||-||-
T Consensus 59 iqags~aa~qFs~IYp~v~v 78 (506)
T KOG2507|consen 59 IQAGSVAATQFSAIYPYVSV 78 (506)
T ss_pred eccCchhhhhhhhhcccccc
Confidence 46789999999999998654
No 8
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=13.90 E-value=36 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred eecccCCCcccceeehhhhhhhhcCCCcHHHHHHHCCCC
Q 045782 79 FIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCP 117 (147)
Q Consensus 79 fiGVms~~lYsvwDI~DDlI~Rkvn~SDA~~fA~l~~~~ 117 (147)
=+|||| +.. .||+|++.. .|...|+-.|++
T Consensus 60 a~~vmn-sf~--ndife~iA~------ea~rla~y~krs 89 (127)
T KOG1744|consen 60 AMGVMN-SFV--NDIFERIAS------EAGRLAHYNKRS 89 (127)
T ss_pred HHHHHH-HHH--HHHHHHHHH------HHhhhhhhcCCC
Confidence 368888 543 788888776 677778777774
No 9
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=13.75 E-value=77 Score=24.77 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=18.9
Q ss_pred hhhcCCCcHHHHHHHCCCC---CCC
Q 045782 99 SRRVHSSDAEKFAEVCPCP---CNG 120 (147)
Q Consensus 99 ~Rkvn~SDA~~fA~l~~~~---~~s 120 (147)
.|.+.++++.++|+..|+| ||+
T Consensus 154 ~~~V~~~e~~~~a~~~~~~~~E~SA 178 (195)
T cd01873 154 ADILPPETGRAVAKELGIPYYETSV 178 (195)
T ss_pred CCccCHHHHHHHHHHhCCEEEEcCC
Confidence 3788999999999999987 665
No 10
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=13.47 E-value=82 Score=22.25 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=15.6
Q ss_pred cccceeehhhhhhhhcCCCcHHHHHHHCCCCCCCc
Q 045782 87 MYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGI 121 (147)
Q Consensus 87 lYsvwDI~DDlI~Rkvn~SDA~~fA~l~~~~~~s~ 121 (147)
.|-=-||=|=+..|..+. --|||||..|
T Consensus 3 fYDEieiedftf~~e~~~-------ftyPCPCGDR 30 (67)
T COG5216 3 FYDEIEIEDFTFSREEKT-------FTYPCPCGDR 30 (67)
T ss_pred ccceeEeeeeEEcCCCce-------EEecCCCCCE
Confidence 344445555555554432 2389998866
Done!