Query 045782
Match_columns 147
No_of_seqs 79 out of 81
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_X Photosystem I subunit P 18.8 88 0.003 18.8 2.5 22 122-145 14-35 (35)
2 3oii_A Essential for mitotic g 16.0 18 0.0006 30.1 -1.5 47 76-125 203-252 (253)
3 3l5o_A Uncharacterized protein 11.9 46 0.0016 27.3 -0.1 12 89-100 19-30 (270)
4 2o1k_A NS28, non-structural gl 10.1 55 0.0019 21.3 -0.2 18 91-108 34-51 (52)
5 2bem_A CBP21; chitin-binding p 9.5 61 0.0021 24.9 -0.2 11 85-95 145-155 (170)
6 4a02_A EFCBM33A, CBM33, chitin 9.1 64 0.0022 24.8 -0.2 11 85-95 142-152 (166)
7 2fyu_K Ubiquinol-cytochrome C 9.1 2.3E+02 0.0078 18.2 2.5 34 40-76 12-45 (56)
8 2rno_A Putative DNA-binding pr 8.8 33 0.0011 25.4 -1.9 23 90-113 73-95 (110)
9 3k67_A Putative dehydratase AF 8.7 65 0.0022 23.7 -0.3 19 98-116 44-62 (159)
10 1g16_A RAS-related protein SEC 8.3 1E+02 0.0034 20.4 0.5 20 98-117 121-140 (170)
No 1
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=18.78 E-value=88 Score=18.80 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcc
Q 045782 122 GWGIIWGLISFFFLCGAMYFGLVI 145 (147)
Q Consensus 122 ~WGviW~iis~~f~~~~i~~Glv~ 145 (147)
.|++ .+.+.-|++++.|..+++
T Consensus 14 ~Wal--llLaINflVAayYFhii~ 35 (35)
T 1jb0_X 14 FWAV--LLLAINFLVAAYYFAAAA 35 (35)
T ss_dssp HHHH--HHHHHHHHHHHHHHTSCC
T ss_pred HHHH--HHHHHHHHHHHHHHhhcC
Confidence 5888 556777899999987653
No 2
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Probab=16.05 E-value=18 Score=30.08 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=27.7
Q ss_pred eeeeecccCCCc--ccceeehhhhhhh-hcCCCcHHHHHHHCCCCCCCcchhH
Q 045782 76 IILFIGKCPHCM--YDGADIYDDLISR-RVHSSDAEKFAEVCPCPCNGIGWGI 125 (147)
Q Consensus 76 ~~LfiGVms~~l--YsvwDI~DDlI~R-kvn~SDA~~fA~l~~~~~~s~~WGv 125 (147)
++.+||.|.|+- |+. |+.||.|+= +..-|=+..++++|.. --+.||+
T Consensus 203 i~vvVGafahG~~~f~~-~~~~e~iSIs~ypLsa~~~c~kic~a--~E~~w~i 252 (253)
T 3oii_A 203 ICVFVGAMARGKDNFAD-EYVDEKVGLSNYPLSASVACSKFCHG--AEDAWNI 252 (253)
T ss_dssp EEEEEECSSSCCSCTTT-TTCSEEEBSCSSCCCHHHHHHHHHHH--HHHHTTC
T ss_pred eEEEEeeeCCCCCcccc-hhcceeEEEeCCChhHHHHHHHHHHH--HHHHhCc
Confidence 578899999993 443 566666442 2233335556666643 3356664
No 3
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=11.90 E-value=46 Score=27.34 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=10.6
Q ss_pred cceeehhhhhhh
Q 045782 89 DGADIYDDLISR 100 (147)
Q Consensus 89 svwDI~DDlI~R 100 (147)
.+|||||++|.+
T Consensus 19 ~~weiYd~Li~~ 30 (270)
T 3l5o_A 19 GMWEIYDAMING 30 (270)
T ss_dssp CTTHHHHHHHHT
T ss_pred CHHHHHHHHHhc
Confidence 489999999986
No 4
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=10.07 E-value=55 Score=21.27 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.5
Q ss_pred eeehhhhhhhhcCCCcHH
Q 045782 91 ADIYDDLISRRVHSSDAE 108 (147)
Q Consensus 91 wDI~DDlI~Rkvn~SDA~ 108 (147)
=||||.++.|+...-|-+
T Consensus 34 ~rIyd~L~~~~~~~idm~ 51 (52)
T 2o1k_A 34 KRIYDKLTVQTTGEIDMT 51 (52)
T ss_dssp HHHHHHHHHC--------
T ss_pred HHHHHHHccCcccccccc
Confidence 378999999887776654
No 5
>2bem_A CBP21; chitin-binding protein, chitin degradation, chitin-binding, FNIII-like fold; 1.55A {Serratia marcescens} SCOP: b.1.18.2 PDB: 2lhs_A 2ben_A
Probab=9.52 E-value=61 Score=24.90 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCcccceeehh
Q 045782 85 HCMYDGADIYD 95 (147)
Q Consensus 85 ~~lYsvwDI~D 95 (147)
|.+|++|++.|
T Consensus 145 hVI~~vWq~~D 155 (170)
T 2bem_A 145 HVILAVWDIAD 155 (170)
T ss_dssp EEEEEEEEESS
T ss_pred EEEEEEEEecc
Confidence 67899999876
No 6
>4a02_A EFCBM33A, CBM33, chitin binding protein; chitin degradation, chitin oxidation; 0.95A {Enterococcus faecalis} SCOP: b.1.18.0
Probab=9.12 E-value=64 Score=24.79 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=9.0
Q ss_pred CCcccceeehh
Q 045782 85 HCMYDGADIYD 95 (147)
Q Consensus 85 ~~lYsvwDI~D 95 (147)
|.+|++|++.|
T Consensus 142 hVI~~vWq~~D 152 (166)
T 4a02_A 142 HVIYAVWGIGD 152 (166)
T ss_dssp EEEEEEEEESS
T ss_pred EEEEEEEEecC
Confidence 67899999865
No 7
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=9.07 E-value=2.3e+02 Score=18.24 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhheeecccCcchhhee
Q 045782 40 LSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYI 76 (147)
Q Consensus 40 ~I~rn~~~~~l~l~fi~lli~~Wfi~~~~~~~~LR~~ 76 (147)
.++++|.-....-|..+.+.++|+-|- ...|.|+
T Consensus 12 ~~~~~w~psa~~~Gaaa~v~~ly~tdw---r~IL~~I 45 (56)
T 2fyu_K 12 QLARNWVPTASLWGAVGAVGLVWATDW---RLILDWV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---HHHHTSS
T ss_pred HHHHHHhhhhhhhhhhhhhheeeeccH---HHHHhhc
Confidence 346899999999999999999999885 4455554
No 8
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=8.76 E-value=33 Score=25.36 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=18.7
Q ss_pred ceeehhhhhhhhcCCCcHHHHHHH
Q 045782 90 GADIYDDLISRRVHSSDAEKFAEV 113 (147)
Q Consensus 90 vwDI~DDlI~Rkvn~SDA~~fA~l 113 (147)
+--|.||+. ||.+-|+|+..|-.
T Consensus 73 vaKIVDDtY-RKMqvSgAtDLASk 95 (110)
T 2rno_A 73 VAKIVDDTY-RKMQIQCAPDLATR 95 (110)
T ss_dssp HHHHHHHHH-HHHHCTTCCCSCTT
T ss_pred HHHHHHHHH-HHHhccCCcccccc
Confidence 556889998 99999999877654
No 9
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=8.72 E-value=65 Score=23.74 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=16.2
Q ss_pred hhhhcCCCcHHHHHHHCCC
Q 045782 98 ISRRVHSSDAEKFAEVCPC 116 (147)
Q Consensus 98 I~Rkvn~SDA~~fA~l~~~ 116 (147)
..|++.+.|...||++.|=
T Consensus 44 ~~rtiT~~di~~FA~~sGD 62 (159)
T 3k67_A 44 YEKKLCEIDVAMFGLISGD 62 (159)
T ss_dssp EEEECCHHHHHHHHHHHCC
T ss_pred EEEEEcHHHHHHHHHHHCC
Confidence 3599999999999998764
No 10
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=8.25 E-value=1e+02 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=15.6
Q ss_pred hhhhcCCCcHHHHHHHCCCC
Q 045782 98 ISRRVHSSDAEKFAEVCPCP 117 (147)
Q Consensus 98 I~Rkvn~SDA~~fA~l~~~~ 117 (147)
-.|++...++.++++..+.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~ 140 (170)
T 1g16_A 121 ETRVVTADQGEALAKELGIP 140 (170)
T ss_dssp TTCCSCHHHHHHHHHHHTCC
T ss_pred CcCccCHHHHHHHHHHcCCe
Confidence 44677778899999988765
Done!