Query         045783
Match_columns 234
No_of_seqs    250 out of 1170
Neff          4.6 
Searched_HMMs 46136
Date          Fri Mar 29 05:28:04 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045783hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd00018 AP2 DNA-binding domain  99.8 2.2E-21 4.9E-26  138.2   7.3   61   35-95      1-61  (61)
  2 smart00380 AP2 DNA-binding dom  99.8 2.8E-21 6.2E-26  139.4   7.8   63   36-98      1-63  (64)
  3 PHA00280 putative NHN endonucl  99.5 5.7E-15 1.2E-19  120.2   5.2   66   21-89     53-119 (121)
  4 PF00847 AP2:  AP2 domain;  Int  99.2 3.4E-11 7.4E-16   83.7   4.5   52   35-86      1-56  (56)
  5 PF14657 Integrase_AP2:  AP2-li  78.7     5.8 0.00013   26.6   4.7   38   47-84      1-42  (46)
  6 PHA02601 int integrase; Provis  69.9     7.1 0.00015   34.9   4.4   44   39-83      2-46  (333)
  7 cd00801 INT_P4 Bacteriophage P  54.5      26 0.00056   30.8   5.1   39   45-83      9-49  (357)
  8 PRK09692 integrase; Provisiona  46.5      53  0.0012   30.7   6.0   39   40-78     33-77  (413)
  9 PF13356 DUF4102:  Domain of un  44.7      38 0.00082   25.3   3.9   43   41-83     28-74  (89)
 10 PF08471 Ribonuc_red_2_N:  Clas  40.5      31 0.00066   27.4   2.9   21   63-83     70-90  (93)
 11 PF05036 SPOR:  Sporulation rel  40.5      15 0.00033   25.4   1.1   23   58-80     43-65  (76)
 12 PF08846 DUF1816:  Domain of un  38.2      46 0.00099   25.0   3.4   37   47-83      9-45  (68)
 13 PF10729 CedA:  Cell division a  31.6      73  0.0016   24.4   3.6   41   33-76     29-69  (80)
 14 PF14112 DUF4284:  Domain of un  29.9      25 0.00054   28.4   0.9   18   59-76      2-19  (122)
 15 PF09954 DUF2188:  Uncharacteri  28.2 1.7E+02  0.0038   20.4   4.9   39   40-82      3-41  (62)
 16 PRK10113 cell division modulat  21.1      85  0.0018   23.9   2.3   42   33-77     29-70  (80)

No 1  
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant  development contain two copies.
Probab=99.85  E-value=2.2e-21  Score=138.21  Aligned_cols=61  Identities=64%  Similarity=1.123  Sum_probs=57.7

Q ss_pred             CceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 045783           35 PRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH   95 (234)
Q Consensus        35 SryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s   95 (234)
                      |+|+||+++++|||+|+|+.+..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999955599999999999999999999999999999999999974


No 2  
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.85  E-value=2.8e-21  Score=139.40  Aligned_cols=63  Identities=63%  Similarity=1.102  Sum_probs=60.6

Q ss_pred             ceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 045783           36 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTN   98 (234)
Q Consensus        36 ryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s~y~   98 (234)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.++++++|.++.+|||.++|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999998999999999999999999999999999999999999999984


No 3  
>PHA00280 putative NHN endonuclease
Probab=99.54  E-value=5.7e-15  Score=120.20  Aligned_cols=66  Identities=14%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             CCchhhccccCCCCCceeeeEeCC-CCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 045783           21 NGSAARNAAAAGKEPRYRGVRKRP-WGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAK   89 (234)
Q Consensus        21 ~~s~~~~~~~~~~~SryRGV~~~~-~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~   89 (234)
                      +.+...++.++.|+|+|+||+|++ .|||+|+|+.  +||+++||.|+++|+|+.||+ ++++|||.+|.
T Consensus        53 ~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         53 KENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            344445566788999999999887 6999999999  999999999999999999997 77899999874


No 4  
>PF00847 AP2:  AP2 domain;  InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.16  E-value=3.4e-11  Score=83.68  Aligned_cols=52  Identities=35%  Similarity=0.461  Sum_probs=45.6

Q ss_pred             CceeeeEeCC-CCcEEEEEeCCC-C--CcccccCCCCCHHHHHHHHHHHHHHhcCC
Q 045783           35 PRYRGVRKRP-WGRFAAEIRDPW-K--KTRVWLGTFDSAEDAARAYDAAARTLRGP   86 (234)
Q Consensus        35 SryRGV~~~~-~GRW~A~I~~~~-~--~k~i~LGtFdT~EEAArAYD~AA~~l~G~   86 (234)
                      |+|+||++++ .++|+|+|++.. +  +++++||.|+++|||+++|+.+.++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999887 699999999832 1  49999999999999999999999999874


No 5  
>PF14657 Integrase_AP2:  AP2-like DNA-binding integrase domain
Probab=78.65  E-value=5.8  Score=26.59  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=29.3

Q ss_pred             cEEEEEe--CCCCC--cccccCCCCCHHHHHHHHHHHHHHhc
Q 045783           47 RFAAEIR--DPWKK--TRVWLGTFDSAEDAARAYDAAARTLR   84 (234)
Q Consensus        47 RW~A~I~--~~~~~--k~i~LGtFdT~EEAArAYD~AA~~l~   84 (234)
                      +|...|.  .+..|  ++++-+.|.|..||-.+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  43334  67888999999999999988877664


No 6  
>PHA02601 int integrase; Provisional
Probab=69.93  E-value=7.1  Score=34.89  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             eeEeCCCCcEEEEEeCC-CCCcccccCCCCCHHHHHHHHHHHHHHh
Q 045783           39 GVRKRPWGRFAAEIRDP-WKKTRVWLGTFDSAEDAARAYDAAARTL   83 (234)
Q Consensus        39 GV~~~~~GRW~A~I~~~-~~~k~i~LGtFdT~EEAArAYD~AA~~l   83 (234)
                      +|++.++|+|+++|+.. ..|+++. .+|.|..||....+.....+
T Consensus         2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~   46 (333)
T PHA02601          2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV   46 (333)
T ss_pred             ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence            56777789999999852 2356555 36999999877666554444


No 7  
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=54.50  E-value=26  Score=30.83  Aligned_cols=39  Identities=26%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             CCcEEEEEeCCCCCcccccCCCC--CHHHHHHHHHHHHHHh
Q 045783           45 WGRFAAEIRDPWKKTRVWLGTFD--SAEDAARAYDAAARTL   83 (234)
Q Consensus        45 ~GRW~A~I~~~~~~k~i~LGtFd--T~EEAArAYD~AA~~l   83 (234)
                      .+.|..+++..++.+++.||+|+  +.++|..........+
T Consensus         9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~   49 (357)
T cd00801           9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL   49 (357)
T ss_pred             CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence            35699999985556678899995  6777777666655444


No 8  
>PRK09692 integrase; Provisional
Probab=46.53  E-value=53  Score=30.65  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=24.4

Q ss_pred             eEeCCCC--cEEEEEeCCCCCc--ccccCCCC--CHHHHHHHHHH
Q 045783           40 VRKRPWG--RFAAEIRDPWKKT--RVWLGTFD--SAEDAARAYDA   78 (234)
Q Consensus        40 V~~~~~G--RW~A~I~~~~~~k--~i~LGtFd--T~EEAArAYD~   78 (234)
                      |+..+.|  .|..+.+.+.+|+  ++-||.|.  |..+|..+..+
T Consensus        33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~   77 (413)
T PRK09692         33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAE   77 (413)
T ss_pred             EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHH
Confidence            3444544  4999887543444  47899999  66666554433


No 9  
>PF13356 DUF4102:  Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=44.71  E-value=38  Score=25.27  Aligned_cols=43  Identities=21%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             EeCCC--CcEEEEEeCCCCCcccccCCCCC--HHHHHHHHHHHHHHh
Q 045783           41 RKRPW--GRFAAEIRDPWKKTRVWLGTFDS--AEDAARAYDAAARTL   83 (234)
Q Consensus        41 ~~~~~--GRW~A~I~~~~~~k~i~LGtFdT--~EEAArAYD~AA~~l   83 (234)
                      +..+.  ..|.-+.+..++.+++.||.|..  ..||..........+
T Consensus        28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~   74 (89)
T PF13356_consen   28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV   74 (89)
T ss_dssp             EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred             EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence            44454  45998888755556899999976  556655554444443


No 10 
>PF08471 Ribonuc_red_2_N:  Class II vitamin B12-dependent ribonucleotide reductase;  InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=40.54  E-value=31  Score=27.44  Aligned_cols=21  Identities=38%  Similarity=0.474  Sum_probs=18.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 045783           63 LGTFDSAEDAARAYDAAARTL   83 (234)
Q Consensus        63 LGtFdT~EEAArAYD~AA~~l   83 (234)
                      -|+|+|+|+|..-||.....|
T Consensus        70 ~GYF~t~eDA~~FydEl~~mL   90 (93)
T PF08471_consen   70 GGYFATEEDAEAFYDELTYML   90 (93)
T ss_pred             CCCcCCHHHHHHHHHHHHHHH
Confidence            499999999999999987654


No 11 
>PF05036 SPOR:  Sporulation related domain;  InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=40.48  E-value=15  Score=25.38  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=18.7

Q ss_pred             CcccccCCCCCHHHHHHHHHHHH
Q 045783           58 KTRVWLGTFDSAEDAARAYDAAA   80 (234)
Q Consensus        58 ~k~i~LGtFdT~EEAArAYD~AA   80 (234)
                      .-+|++|.|++.+||..+-....
T Consensus        43 ~yrV~~G~f~~~~~A~~~~~~l~   65 (76)
T PF05036_consen   43 WYRVRVGPFSSREEAEAALRKLK   65 (76)
T ss_dssp             CEEEEECCECTCCHHHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHh
Confidence            34688899999999988877665


No 12 
>PF08846 DUF1816:  Domain of unknown function (DUF1816);  InterPro: IPR014945  Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes. 
Probab=38.21  E-value=46  Score=24.95  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             cEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHh
Q 045783           47 RFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTL   83 (234)
Q Consensus        47 RW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l   83 (234)
                      .|=++|.-..-.-..|.|=|.|.+||..+.-.-...+
T Consensus         9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL   45 (68)
T PF08846_consen    9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDL   45 (68)
T ss_pred             cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHH
Confidence            4668888755567899999999999998854443333


No 13 
>PF10729 CedA:  Cell division activator CedA;  InterPro: IPR019666  CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=31.62  E-value=73  Score=24.35  Aligned_cols=41  Identities=22%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             CCCceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHH
Q 045783           33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAY   76 (234)
Q Consensus        33 ~~SryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAY   76 (234)
                      +--+||-|+.-+ |||+|.+..  +..-..--.|...|.|-|.-
T Consensus        29 k~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqrwa   69 (80)
T PF10729_consen   29 KMDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQRWA   69 (80)
T ss_dssp             -TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHHHH
T ss_pred             hcccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHHHH
Confidence            456888886544 999999987  44333445788888887653


No 14 
>PF14112 DUF4284:  Domain of unknown function (DUF4284)
Probab=29.86  E-value=25  Score=28.42  Aligned_cols=18  Identities=22%  Similarity=0.818  Sum_probs=13.7

Q ss_pred             cccccCCCCCHHHHHHHH
Q 045783           59 TRVWLGTFDSAEDAARAY   76 (234)
Q Consensus        59 k~i~LGtFdT~EEAArAY   76 (234)
                      -.||||+|.|++|=..=.
T Consensus         2 VsiWiG~f~s~~el~~Y~   19 (122)
T PF14112_consen    2 VSIWIGNFKSEDELEEYF   19 (122)
T ss_pred             eEEEEecCCCHHHHHHHh
Confidence            358999999988765543


No 15 
>PF09954 DUF2188:  Uncharacterized protein conserved in bacteria (DUF2188);  InterPro: IPR018691  This family has no known function. 
Probab=28.17  E-value=1.7e+02  Score=20.36  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             eEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 045783           40 VRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAART   82 (234)
Q Consensus        40 V~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~   82 (234)
                      |..+..|.|..+...  ..+  -..+|+|.+||..+=...+..
T Consensus         3 V~p~~~~~W~v~~eg--~~r--a~~~~~Tk~eAi~~Ar~~a~~   41 (62)
T PF09954_consen    3 VVPREDGGWAVKKEG--AKR--ASKTFDTKAEAIEAARELAKN   41 (62)
T ss_pred             EEecCCCCceEEeCC--Ccc--cccccCcHHHHHHHHHHHHHh
Confidence            444445779887754  332  378999999998765555544


No 16 
>PRK10113 cell division modulator; Provisional
Probab=21.10  E-value=85  Score=23.94  Aligned_cols=42  Identities=21%  Similarity=0.225  Sum_probs=28.4

Q ss_pred             CCCceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHH
Q 045783           33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD   77 (234)
Q Consensus        33 ~~SryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD   77 (234)
                      +--+|+-|+.-+ |||+|.+..  +..-..--.|..+|.|-|.-.
T Consensus        29 kmd~frDVW~Lr-GKYVAFvl~--ge~FrRSPaFs~PEsAQRWAn   70 (80)
T PRK10113         29 KMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFSVPESAQRWAN   70 (80)
T ss_pred             hhcchhhhheec-cceEEEEEe--chhhccCCccCCcHHHHHHHH
Confidence            446788886544 999999987  333333456888888876533


Done!