Query 045783
Match_columns 234
No_of_seqs 250 out of 1170
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.3E-24 4.3E-29 157.0 4.6 60 36-95 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 91.7 0.063 2.1E-06 40.0 1.5 27 32-60 3-30 (77)
3 1u3e_M HNH homing endonuclease 84.1 0.2 6.7E-06 41.0 -0.1 38 37-77 109-146 (174)
4 1z1b_A Integrase; protein-DNA 73.5 3.1 0.00011 35.4 4.2 42 38-83 14-55 (356)
5 3jtz_A Integrase; four strande 60.7 9.6 0.00033 28.0 4.1 44 40-83 28-75 (88)
6 3ju0_A Phage integrase; four s 43.9 21 0.00072 27.2 3.7 44 40-83 28-75 (108)
7 2ftc_I Mitochondrial ribosomal 27.7 58 0.002 25.3 3.8 35 48-84 80-114 (118)
8 1uta_A FTSN, MSGA, cell divisi 26.7 33 0.0011 24.0 2.1 23 59-81 46-68 (81)
9 1x60_A Sporulation-specific N- 26.2 18 0.00062 25.0 0.6 23 59-81 46-68 (79)
10 1b69_A Protein (integrase); in 24.5 43 0.0015 24.1 2.3 21 35-55 10-30 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=1.3e-24 Score=156.98 Aligned_cols=60 Identities=68% Similarity=1.189 Sum_probs=57.0
Q ss_pred ceeeeEeCCCCcEEEEEeCCCC-CcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 045783 36 RYRGVRKRPWGRFAAEIRDPWK-KTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH 95 (234)
Q Consensus 36 ryRGV~~~~~GRW~A~I~~~~~-~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s 95 (234)
+||||+++++|||+|+|+++.+ |++||||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999874 78999999999999999999999999999999999974
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.70 E-value=0.063 Score=40.01 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=21.9
Q ss_pred CCCCceeeeEeCC-CCcEEEEEeCCCCCcc
Q 045783 32 GKEPRYRGVRKRP-WGRFAAEIRDPWKKTR 60 (234)
Q Consensus 32 ~~~SryRGV~~~~-~GRW~A~I~~~~~~k~ 60 (234)
..+|+|+||+|++ .+.|.|.-.+ +|++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 4679999999987 5999999998 5543
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=84.11 E-value=0.2 Score=40.95 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=30.0
Q ss_pred eeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHH
Q 045783 37 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD 77 (234)
Q Consensus 37 yRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD 77 (234)
++||.+.+.++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 467755224679999988 5 6788999999999999963
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=73.51 E-value=3.1 Score=35.39 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=31.6
Q ss_pred eeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHh
Q 045783 38 RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTL 83 (234)
Q Consensus 38 RGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l 83 (234)
.||++++.|+|..++.. +|+++.+|. |..||.....++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36887788999987655 788899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=60.66 E-value=9.6 Score=28.03 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=31.4
Q ss_pred eEeCCC--CcEEEEEeCCCCCcccccCCCC--CHHHHHHHHHHHHHHh
Q 045783 40 VRKRPW--GRFAAEIRDPWKKTRVWLGTFD--SAEDAARAYDAAARTL 83 (234)
Q Consensus 40 V~~~~~--GRW~A~I~~~~~~k~i~LGtFd--T~EEAArAYD~AA~~l 83 (234)
++..++ ..|.-+.+..++.+++-||.|. |.+||....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 445554 3599888875455678999997 5888887777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=43.94 E-value=21 Score=27.21 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=30.6
Q ss_pred eEeCCCC--cEEEEEeCCCCCcccccCCCC--CHHHHHHHHHHHHHHh
Q 045783 40 VRKRPWG--RFAAEIRDPWKKTRVWLGTFD--SAEDAARAYDAAARTL 83 (234)
Q Consensus 40 V~~~~~G--RW~A~I~~~~~~k~i~LGtFd--T~EEAArAYD~AA~~l 83 (234)
++..++| .|.-+.+..++.+++-||.|. |..+|-...+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455543 598888874455678999997 5778777776665555
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=27.70 E-value=58 Score=25.32 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhc
Q 045783 48 FAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLR 84 (234)
Q Consensus 48 W~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~ 84 (234)
|+|.|.. +..-+-++...+++.|..|...|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999987 5555566666889999999999998874
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=26.69 E-value=33 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHH
Q 045783 59 TRVWLGTFDSAEDAARAYDAAAR 81 (234)
Q Consensus 59 k~i~LGtFdT~EEAArAYD~AA~ 81 (234)
-+|++|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46888999999999888766544
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=26.21 E-value=18 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHHHHH
Q 045783 59 TRVWLGTFDSAEDAARAYDAAAR 81 (234)
Q Consensus 59 k~i~LGtFdT~EEAArAYD~AA~ 81 (234)
-++++|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46788999999999988766544
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=24.49 E-value=43 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.0
Q ss_pred CceeeeEeCCCCcEEEEEeCC
Q 045783 35 PRYRGVRKRPWGRFAAEIRDP 55 (234)
Q Consensus 35 SryRGV~~~~~GRW~A~I~~~ 55 (234)
.-+.|+++++.|+|+.++.+.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT
T ss_pred ccCCCeEEccCCcEEEEEEcC
Confidence 457899999999999999884
Done!