BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045784
(90 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|218197921|gb|EEC80348.1| hypothetical protein OsI_22431 [Oryza sativa Indica Group]
Length = 402
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPL 62
++ L+DS TH FV E A +L NVMVA+G++ +S G C IK+
Sbjct: 184 MSALVDSGSTHTFVATEAARRLGLSPTTKSGLNVMVANGDQVTSSGICSGIPIKIDSEDF 243
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
I+D Y++P EGYDVVL QWL T G I
Sbjct: 244 IIDCYVIPLEGYDVVLGVQWLRTLGPI 270
>gi|147783182|emb|CAN68669.1| hypothetical protein VITISV_039388 [Vitis vinifera]
Length = 1360
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAV-----------KLNVMVASGERFSSLGTC 50
I V+G+L +K V VLID THNF+ Q + V K VMVA+ E+ G C
Sbjct: 364 ICVMGKLKNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVANREKIECAGQC 423
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +QG + D+Y+LP +VL QWL T G IE
Sbjct: 424 RSLTLTIQGYSVTADYYILPVAACQLVLGVQWLETLGPIE 463
>gi|147802351|emb|CAN77123.1| hypothetical protein VITISV_013625 [Vitis vinifera]
Length = 439
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCL 51
+RV+GRL +K +TVLID THNF+ Q + K+ V+VA+ E +G L
Sbjct: 275 LRVLGRLKNKYLTVLIDDNNTHNFIDQIVVSRFGLLVVREKKIQVVVANQEWIECMGQFL 334
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +Q +P+ D+Y+LP VVL QWL T G IE
Sbjct: 335 GLTLIIQEIPVTADYYILPMAACQVVLGVQWLETLGSIE 373
>gi|89887334|gb|ABD78322.1| polyprotein [Primula vulgaris]
Length = 1359
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELA--VKLN--------VMVASGERFSSLGTCL 51
IR +G+L + V++L+DS THNF+ + +KL+ V +A+G++ S GTC
Sbjct: 291 IRFVGKLKGQKVSILVDSGSTHNFIDPKWVPLLKLSNVQSDIMEVKIANGDKIKSSGTCE 350
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ + +Q VDF LLP GYD+VL WLS G+I
Sbjct: 351 KVKLLIQENQFEVDFLLLPLVGYDLVLGVHWLSQLGVI 388
>gi|115487072|ref|NP_001066023.1| Os12g0121200 [Oryza sativa Japonica Group]
gi|113648530|dbj|BAF29042.1| Os12g0121200, partial [Oryza sativa Japonica Group]
Length = 461
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
I+V RL + + L+DS THNF+ +A + L+V VA+G+R S G C
Sbjct: 2 IKVWARLGSQELVALLDSGSTHNFINDAIAHQAGVPLQRRPGLSVAVANGDRVPSPGRCP 61
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ + +DFY LP GYD+VL QWL T G
Sbjct: 62 PQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLG 97
>gi|242095940|ref|XP_002438460.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
gi|241916683|gb|EER89827.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]
Length = 1437
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+T L+D+ THNF+ + A + L VA+GER + G Q I + G
Sbjct: 348 LTALLDTGSTHNFIAETAATRTGLPVLADPRLTATVANGERIACPGVLRQAPIIIDGEGF 407
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
VD Y+LP GYD+VL TQWL T G IE
Sbjct: 408 CVDLYVLPLAGYDLVLGTQWLVTLGRIE 435
>gi|440577416|emb|CCI55439.1| PH01B031C15.22 [Phyllostachys edulis]
Length = 267
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 15 VLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIV 64
L+DS THNFV EL + L+V VA+G+ +S G C TLI + I+
Sbjct: 77 ALVDSGSTHNFVAAELVARVGLSLTPRTGLSVAVANGDHVTSGGICRATLISIDKEDFIL 136
Query: 65 DFYLLPFEGYDVVLDTQWLSTFGLI 89
DF +P +G+DVVL QWL + G I
Sbjct: 137 DFLTIPLDGFDVVLGVQWLGSLGPI 161
>gi|356569674|ref|XP_003553022.1| PREDICTED: uncharacterized protein LOC100788433 [Glycine max]
Length = 1433
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCLQ 52
R+ G + H +TVLIDS THNF++ LA L V+V +G + C
Sbjct: 351 RLFGYINHTRITVLIDSGSTHNFLQPRLATFLHLPTVPTNPLRVLVGNGAVLTCTHLCPD 410
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
T I LQ + F+LLP G DV+L QWL G I
Sbjct: 411 TTISLQSHHFTLTFHLLPISGADVILGIQWLKLLGPI 447
>gi|147767540|emb|CAN66709.1| hypothetical protein VITISV_006396 [Vitis vinifera]
Length = 1133
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Query: 6 GRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCLQTLI 55
G + + + VLIDS THNF+ +A K+ VMVASGE+ SLG+C +
Sbjct: 1052 GSFLFQPMEVLIDSGSTHNFISVLVAECVGFNLKQDRKMEVMVASGEKLVSLGSCSNVQL 1111
Query: 56 KLQGVPLIVDFYLLPFEGYDVV 77
KLQ V ++V F +LP E +DVV
Sbjct: 1112 KLQKVTIVVKFLVLPLEDFDVV 1133
>gi|147843077|emb|CAN83300.1| hypothetical protein VITISV_044100 [Vitis vinifera]
Length = 1366
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
+R +G + + V +L+D+ THNF+ + + L+V VA+G+ S G+C
Sbjct: 329 MRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCA 388
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +QG +DFY+L G D+VL QWL T G I
Sbjct: 389 AVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPI 426
>gi|147774273|emb|CAN76793.1| hypothetical protein VITISV_026680 [Vitis vinifera]
Length = 1469
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
+R +G + + V +L+D+ THNF+ + + L+V VA+G+ S G+C
Sbjct: 362 MRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCA 421
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +QG +DFY+L G D+VL QWL T G I
Sbjct: 422 AVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPI 459
>gi|147789424|emb|CAN66607.1| hypothetical protein VITISV_017554 [Vitis vinifera]
Length = 2822
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
+R +G + + V +L+D+ THNF+ + + L+V VA+G+ S G+C
Sbjct: 327 MRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVCSEGSCA 386
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +QG +DFY+L G D+VL QWL T G I
Sbjct: 387 AVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPI 424
>gi|170660047|gb|ACB28472.1| polyprotein [Ananas comosus]
Length = 953
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+R+ G + ++ + +LIDS THNF+ +A KL NV VA G + S TC
Sbjct: 12 MRLCGTVKNRRIHILIDSGSTHNFLDAAVAAKLGCCAENIPAVNVTVADGNKLISSSTCR 71
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+QG+ + LLP G D+VL QWL G I
Sbjct: 72 AFKWKMQGLEFKANLLLLPLRGCDMVLGVQWLKQLGPI 109
>gi|115481476|ref|NP_001064331.1| Os10g0317000 [Oryza sativa Japonica Group]
gi|15217201|gb|AAK92545.1|AC051624_3 Putative retroelement [Oryza sativa Japonica Group]
gi|31431040|gb|AAP52878.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|113638940|dbj|BAF26245.1| Os10g0317000 [Oryza sativa Japonica Group]
Length = 1476
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+ L+D+ THNF+ ++ A++ L VA+GE+ S G + I +QG+
Sbjct: 350 LVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMAF 409
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFG 87
VD Y++P GYD+VL TQW++ G
Sbjct: 410 DVDLYVMPLAGYDMVLGTQWMAHLG 434
>gi|15451607|gb|AAK98731.1|AC090485_10 Putative retroelement [Oryza sativa Japonica Group]
gi|108706172|gb|ABF93967.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1461
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
++RV +L + L+D+ THNF+ + A + + VA+GE+ + G
Sbjct: 345 LLRV--QLGATTLVALVDTGSTHNFIGESAAARTGLSVQPRPRMTATVANGEKVACPGVL 402
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
I ++G+P VD Y++P GYD+VL TQW++ G
Sbjct: 403 RHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLG 439
>gi|14626274|gb|AAK71542.1|AC087852_2 putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108711059|gb|ABF98854.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 258
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+T L+DS TH+F+ +E A + + VA+GE+ + G Q ++ + G
Sbjct: 46 LTALLDSGSTHSFIAEEAACRTGLPVQPRPRMTATVANGEKVACPGVIRQAVLSIDGSLF 105
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
VD +++P GYD+VL TQW+++ G I
Sbjct: 106 TVDLFVIPLAGYDMVLGTQWMASLGPI 132
>gi|359479937|ref|XP_002269588.2| PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera]
Length = 787
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+RV ++ V VLIDS THNF+ LA KL V VA+GER G
Sbjct: 332 MRVTAKMGPHEVMVLIDSGSTHNFISNRLANKLRLPVIPTETFPVWVANGERLKCQGRYD 391
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ ++LQG + + LP G D+VL QWL G +
Sbjct: 392 KVRVELQGTEFYLTLFSLPLSGLDLVLGVQWLEMLGSV 429
>gi|356511037|ref|XP_003524238.1| PREDICTED: uncharacterized protein LOC100782971 [Glycine max]
Length = 1863
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQ 52
R+ G + H VT+L+DS THNFV+ +A L VMV +G +C
Sbjct: 307 RLYGVINHTRVTILVDSGSTHNFVQPRIAKFLGLPMEDTTSLQVMVGNGSVLECKQSCPA 366
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
T + LQ V +LP G DVVL +WL T G I
Sbjct: 367 TTLLLQQHSFTVTLRVLPISGADVVLGVEWLRTLGPI 403
>gi|242065034|ref|XP_002453806.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
gi|241933637|gb|EES06782.1| hypothetical protein SORBIDRAFT_04g018075 [Sorghum bicolor]
Length = 1414
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS THNF+ +E A ++ MVA+GE+ G + + +D
Sbjct: 310 LLDSGSTHNFIAEEAARRTGLRVQPRARMTAMVANGEKIPCPGVIRHAPVTIDNTTFAID 369
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
+++P GYD+VL TQW++T G I
Sbjct: 370 LFVMPLAGYDIVLGTQWMATLGPI 393
>gi|357130210|ref|XP_003566743.1| PREDICTED: uncharacterized protein LOC100838891 [Brachypodium
distachyon]
Length = 635
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 15 VLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCLQTLIKLQGVPLIV 64
LIDS THNF+ +ELA +L V +A+G+ + G T I + +V
Sbjct: 210 ALIDSGSTHNFISEELAAHVSAPFCTGRRLRVTIANGDHVTCSGLLRHTAIAIGQESFVV 269
Query: 65 DFYLLPFEGYDVVLDTQWLSTFGLI 89
D Y +P G+DVVL T WL T G I
Sbjct: 270 DLYAIPLGGFDVVLGTHWLKTLGPI 294
>gi|147864527|emb|CAN80491.1| hypothetical protein VITISV_042679 [Vitis vinifera]
Length = 1412
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 15 VLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIV 64
VLIDS +HNF+ ++A +++ V VA+G+ C ++QG I
Sbjct: 398 VLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGQELHCTALCSDFRWRMQGQEFIA 457
Query: 65 DFYLLPFEGYDVVLDTQWLSTFGLI 89
+ Y+LP E YD++L TQWL+T G I
Sbjct: 458 EVYVLPLETYDLILGTQWLATLGDI 482
>gi|147842329|emb|CAN76208.1| hypothetical protein VITISV_041623 [Vitis vinifera]
Length = 522
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+RV ++ V VLIDS THNF+ ++ L+ V VA+G+ G
Sbjct: 320 MRVTAKIGTHDVVVLIDSGSTHNFISDKVVALLHLPVVPTAPFHVRVANGQPLKCQGRFD 379
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
I LQG+P + FY LP G D+VL QWL G +
Sbjct: 380 NIHILLQGIPFSITFYSLPLNGLDLVLGVQWLEQLGSV 417
>gi|18425247|gb|AAL69425.1|AC098565_7 Putative polyprotein [Oryza sativa]
gi|31430198|gb|AAP52144.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 848
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
I+V R+ + L+DS THNF+ A + L+V VA+G+R +S G
Sbjct: 350 IKVQARIGATDLVALLDSGSTHNFISDVAARRARVPLEPRHGLSVAVANGDRITSPGCFP 409
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ + ++DFY LP GYDVVL QWL + G
Sbjct: 410 SQRVTIGDHTFVIDFYALPLGGYDVVLGAQWLGSLG 445
>gi|147852240|emb|CAN80132.1| hypothetical protein VITISV_012031 [Vitis vinifera]
Length = 1371
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 15 VLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIV 64
VLIDS +HNF+ ++A +++ V VA+G C ++QG I
Sbjct: 398 VLIDSGSSHNFLSSKVAKRVDCCWQKARGIRVTVANGHELHCTALCSDFRWRMQGQEFIA 457
Query: 65 DFYLLPFEGYDVVLDTQWLSTFGLI 89
+ Y+LP E YD++L TQWL+T G I
Sbjct: 458 EVYVLPLETYDLILGTQWLATLGDI 482
>gi|208609065|dbj|BAG72154.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
+V G++ ++ V +LID T NF+ Q+L V+L V V +G + + G C
Sbjct: 426 KVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKN 485
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+++QG+P++ F++L G +VVL WL++ G IE
Sbjct: 486 LKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 523
>gi|208609057|dbj|BAG72151.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
+V G++ ++ V +LID T NF+ Q+L V+L V V +G + + G C
Sbjct: 426 KVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKN 485
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+++QG+P++ F++L G +VVL WL++ G IE
Sbjct: 486 LKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 523
>gi|208609055|dbj|BAG72150.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
+V G++ ++ V +LID T NF+ Q+L V+L V V +G + + G C
Sbjct: 426 KVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKN 485
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+++QG+P++ F++L G +VVL WL++ G IE
Sbjct: 486 LKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 523
>gi|208609051|dbj|BAG72148.1| hypothetical protein [Lotus japonicus]
gi|208609062|dbj|BAG72153.1| hypothetical protein [Lotus japonicus]
Length = 1558
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
+V G++ ++ V +LID T NF+ Q+L V+L V V +G + + G C
Sbjct: 426 KVKGKIGNREVLILIDCGATSNFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKN 485
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+++QG+P++ F++L G +VVL WL++ G IE
Sbjct: 486 LKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 523
>gi|62734405|gb|AAX96514.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 575
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVP 61
V L+DS THNF+ ELA L V+VA+G+R S G C ++++G
Sbjct: 395 VVALVDSGSTHNFIHTELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLRLRIEGKL 454
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
VD + L D++L T+WLST G I
Sbjct: 455 FTVDCFALDISTVDIILGTEWLSTLGPI 482
>gi|108864287|gb|ABA92869.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 413
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVP 61
V L+DS THNF+ ELA L V+VA+G+R S G C ++++G
Sbjct: 233 VVALVDSGSTHNFIHTELARHLCLHLSPVRHDLYVVVANGDRLVSPGRCANLRLRIEGKL 292
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
VD + L D++L T+WLST G I
Sbjct: 293 FTVDCFALDISTVDIILGTEWLSTLGPI 320
>gi|147863509|emb|CAN79783.1| hypothetical protein VITISV_002632 [Vitis vinifera]
Length = 166
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFV------------RQELAVKLNVMVASGERFSSLGT 49
+R+ G L + VLIDS THNF+ +Q+ K+ VMVASGE+ S G
Sbjct: 76 MRLAGSLFFHPMEVLIDSWSTHNFISVLVVERVGLNLKQDR--KMEVMVASGEKLVSPGR 133
Query: 50 CLQTLIKLQGVPLIVDFYLLPFE 72
C +KLQ VP+ V+F++LP E
Sbjct: 134 CSNVQLKLQKVPIAVEFFILPLE 156
>gi|208609049|dbj|BAG72147.1| hypothetical protein [Lotus japonicus]
gi|208609053|dbj|BAG72149.1| hypothetical protein [Lotus japonicus]
Length = 1520
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
+V G++ ++ V +LID T NF+ Q+L V+L V V +G + + G C
Sbjct: 388 KVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKN 447
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+++QG+P++ F++L G +VVL WL++ G IE
Sbjct: 448 LKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 485
>gi|147775005|emb|CAN70471.1| hypothetical protein VITISV_013478 [Vitis vinifera]
Length = 1122
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R+ ++ V VLIDS THNF+ +++A L+ V VA+G G
Sbjct: 1 MRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLSVVPTKPFTVKVANGTPLKCQGRFE 60
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ LQG+P + Y LP G D+VL QWL G +
Sbjct: 61 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTV 98
>gi|147841216|emb|CAN64356.1| hypothetical protein VITISV_020633 [Vitis vinifera]
Length = 1852
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+RV + + + VLIDS THNF+ ++A L V VA+GER G
Sbjct: 268 MRVAATIKSQPIMVLIDSGSTHNFLSDKVARTLRLPVVPTKSFTVHVANGERLLCQGRFE 327
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ I LQG+P + Y LP G D+VL QWL G +
Sbjct: 328 KVPIDLQGIPFSLTCYSLPLAGLDMVLGIQWLXMLGSV 365
>gi|147772855|emb|CAN73669.1| hypothetical protein VITISV_003711 [Vitis vinifera]
Length = 1308
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCLQTLIKLQGVPL 62
V LIDS THNF+ + L ++V A+GER S G + + LQG
Sbjct: 237 VVALIDSGSTHNFISDRVVETLRLLVKPTTPFTVRVANGERLSCKGKYEKLTVNLQGNEF 296
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+DF+ +P G D+VL QWL T G +
Sbjct: 297 HLDFFSVPLNGLDMVLGIQWLETLGSV 323
>gi|116309032|emb|CAH66146.1| OSIGBa0114M03.4 [Oryza sativa Indica Group]
Length = 1448
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+ L+DS THNF+ + A + L MVA+GER + +G + + G
Sbjct: 350 LVALLDSGSTHNFISEAAAQRSGLPLQQRPRLTAMVANGERVTCIGVIRGAPLTIGGNSF 409
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
D +++P GYDVVL T+WL G I
Sbjct: 410 PADLFVMPLAGYDVVLGTRWLGALGPI 436
>gi|147806355|emb|CAN67624.1| hypothetical protein VITISV_037284 [Vitis vinifera]
Length = 921
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 18 DSRRTHNFVRQEL----------AVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFY 67
D THNF+ Q + A K VMVA+ E+ +G C I +QG + D+Y
Sbjct: 209 DGGSTHNFIDQAIVTXHGLPIIPAKKFQVMVANXEKIXCVGLCPTVTISIQGKSITADYY 268
Query: 68 LLPFEGYDVVLDTQWLSTFGLIE 90
+LP +VL QWL T G IE
Sbjct: 269 VLPVSXCQLVLGVQWLETLGPIE 291
>gi|242077302|ref|XP_002448587.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
gi|241939770|gb|EES12915.1| hypothetical protein SORBIDRAFT_06g029685 [Sorghum bicolor]
Length = 797
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+D+ THNF+ + A + L MVA+GE+ LG I + VD
Sbjct: 424 LLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCLGVIKHAPIAIHDSVFAVD 483
Query: 66 FYLLPFEGYDVVLDTQWLSTFG 87
+++P G+D+VL TQW++T G
Sbjct: 484 LFVMPLAGHDLVLGTQWMATLG 505
>gi|242085414|ref|XP_002443132.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
gi|241943825|gb|EES16970.1| hypothetical protein SORBIDRAFT_08g010830 [Sorghum bicolor]
Length = 1462
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+ L DS +HNF+ + A + L+ +VA+GER + G Q +QG
Sbjct: 338 LVALSDSGSSHNFISERAAQRTGLLVVSRPRLSAVVANGERIACPGVLPQAPFVIQGSSF 397
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFG 87
D +++P G+DVVL QWL T G
Sbjct: 398 TADLFIMPLAGFDVVLGAQWLGTLG 422
>gi|147784790|emb|CAN75225.1| hypothetical protein VITISV_035856 [Vitis vinifera]
Length = 793
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R+ ++ V VLIDS THNF+ +++A L+ V V +G G
Sbjct: 304 MRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRFE 363
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ LQG+P + Y LP G D+VL QWL G +
Sbjct: 364 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTV 401
>gi|242070717|ref|XP_002450635.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
gi|241936478|gb|EES09623.1| hypothetical protein SORBIDRAFT_05g008466 [Sorghum bicolor]
Length = 1507
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 12 VVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQTLIKLQGVP 61
++ L+DS THNF+ A +L +VA+GER + G + + GV
Sbjct: 427 ILVALLDSGSTHNFISAAAARRSGLPLRQRPRLTALVANGERVTCDGVIRDAPLLIDGVT 486
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
D +++P GYDVVL T+WL G I
Sbjct: 487 FPADLFVMPLAGYDVVLGTRWLGALGPI 514
>gi|147860462|emb|CAN82562.1| hypothetical protein VITISV_014148 [Vitis vinifera]
Length = 1384
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R+ ++ V VLIDS THNF+ +++ L+ V VA+G G
Sbjct: 412 MRITTKIGQHEVVVLIDSGSTHNFISEKVVDMLHLPXVPTDPFTVKVANGTPLKCQGRFE 471
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ LQG+P + Y LP G D+VL QWL G I
Sbjct: 472 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWLEQLGTI 509
>gi|440577319|emb|CCI55326.1| PH01B001I13.22 [Phyllostachys edulis]
Length = 1426
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS THNF+ EL K L+V VA+G + + G C T I + ++D
Sbjct: 1287 LVDSGSTHNFIAAELIDKVGLKLAPRTGLSVAVANGNKITCGGVCYTTPISIDHEHFVLD 1346
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
+P G+D+VL QWL + G I
Sbjct: 1347 LLTIPLGGFDIVLGVQWLRSLGPI 1370
>gi|147860532|emb|CAN81876.1| hypothetical protein VITISV_034528 [Vitis vinifera]
Length = 1241
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R+ ++ V VLIDS THNF+ +++A L+ V VA+G G
Sbjct: 336 MRITAKIGQHKVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVANGTPLKCQGRFE 395
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
+ LQG+P + Y LP G D+VL QWL
Sbjct: 396 HVHVILQGIPFSLTLYSLPLTGLDLVLGVQWL 427
>gi|12322008|gb|AAG51046.1|AC069473_8 gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis
thaliana]
gi|10998138|dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1499
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+RV G K++ +LIDS THNF+ A KL V VA G + G
Sbjct: 390 MRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVT 449
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
KLQ D L+P +G D+VL QWL T G I
Sbjct: 450 DFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRI 487
>gi|147773289|emb|CAN64782.1| hypothetical protein VITISV_003835 [Vitis vinifera]
Length = 1575
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R++ R+ V VL+DS THNF+ + +A L V VA+GE G
Sbjct: 633 MRIVARIGAHDVVVLVDSGSTHNFISERMANLLRLPVVPTESFMVRVANGENLRCQGRFE 692
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ I LQG + Y LP G D+VL QWL G +
Sbjct: 693 EVQINLQGTIFSLTLYSLPLTGLDIVLGIQWLELLGSV 730
>gi|147838975|emb|CAN68101.1| hypothetical protein VITISV_042364 [Vitis vinifera]
Length = 566
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS---SLGTCLQ------ 52
+R+ ++ V VLIDS THNF+ +++A L++ V + F+ + GT L+
Sbjct: 322 MRITTKIAQHEVVVLIDSGSTHNFISEKVAYMLHLPVVPTKPFTVKVANGTPLKCQWRFE 381
Query: 53 -TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ LQG+P + Y LP D+VL QWL G +
Sbjct: 382 HVHVILQGIPFSLTLYSLPLTXLDLVLGVQWLEQLGTV 419
>gi|242033109|ref|XP_002463949.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
gi|241917803|gb|EER90947.1| hypothetical protein SORBIDRAFT_01g009436 [Sorghum bicolor]
Length = 1450
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
+RV R+ + L+D+ THNF+ + A + L MVA+GE+ G
Sbjct: 410 MRVRVRVGSTPLIALLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCPGVIK 469
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ + VD +++P G+D+VL TQW++T G
Sbjct: 470 NAPLAIHDSVFAVDLFVMPLAGHDLVLGTQWMATLG 505
>gi|356574444|ref|XP_003555357.1| PREDICTED: uncharacterized protein LOC100813803 [Glycine max]
Length = 2140
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
R+ G + VT+L+DS THNFV+ +A LN VMV +G
Sbjct: 222 RLYGLINKTRVTILVDSGSTHNFVQPRVAKFLNLPLHDTQPLRVMVGNGSVLDCQQMIPD 281
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
T I +Q +V LLP G DVVL +WL T G
Sbjct: 282 TTILIQEHRFVVTLRLLPLSGADVVLGVEWLRTLG 316
>gi|242085372|ref|XP_002443111.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
gi|241943804|gb|EES16949.1| hypothetical protein SORBIDRAFT_08g008675 [Sorghum bicolor]
Length = 1456
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+D+ THNF+ + A + L MVA+GE+ G I + VD
Sbjct: 365 LLDTGSTHNFIAETAAARSGLPIQSQPRLTAMVANGEKVPCPGVIKHAPIAIHDSVFAVD 424
Query: 66 FYLLPFEGYDVVLDTQWLSTFG 87
+++P G+D+VL TQW++T G
Sbjct: 425 LFVMPLAGHDLVLGTQWMATLG 446
>gi|449504804|ref|XP_004162299.1| PREDICTED: uncharacterized protein LOC101228789 [Cucumis sativus]
Length = 250
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+++ G + K V VL+D THNF+ +L L V++ SG G C
Sbjct: 27 MKIRGEIQGKEVIVLVDCGATHNFISDKLVATLQLPTKDTSNYGVILGSGTAIKGKGVCE 86
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
Q + L G + DF L G DV+L QWL + G+ E
Sbjct: 87 QVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSLGVTE 125
>gi|108862596|gb|ABA97714.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1287
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+ +DS THNF+ + A +L MVA+GER + G + + G
Sbjct: 314 LVAFLDSGSTHNFISEAAARRSGMPLHTRPRLTAMVANGERVTCAGVLKAAPLTIDGALF 373
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
D +++P G+DVVL T WL T G I
Sbjct: 374 PADLFVMPLVGFDVVLGTCWLGTLGPI 400
>gi|449473450|ref|XP_004153884.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 564
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVR----QELAVKLN------VMVASGERFSSLGTCL 51
+++ G + K V +LIDS THNF+ +E+ ++L V + G R G C
Sbjct: 234 MKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTRCQGRGVCN 293
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KL+ + ++ DF + DV+L QWL+T G ++
Sbjct: 294 RLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMK 332
>gi|449470598|ref|XP_004153003.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 1049
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVR----QELAVKLN------VMVASGERFSSLGTCL 51
+++ G + K V +LIDS THNF+ +E+ ++L V + G R G C
Sbjct: 369 MKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTRCQGRGVCN 428
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KL+ + ++ DF + DV+L QWL+T G ++
Sbjct: 429 RLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMK 467
>gi|449501536|ref|XP_004161395.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 740
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSL----------GTCL 51
+++ G + + V VLIDS THNFV ++ ++ + + F++ G C
Sbjct: 334 MKLRGEIEGREVVVLIDSGATHNFVHYKIIEEMKIPSEADTTFAATIGDGTCCKGRGLCK 393
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KLQG+ ++ DF L+ D +L QWL T G ++
Sbjct: 394 RLEVKLQGITVVADFLLIELGNVDAILGMQWLDTTGTMK 432
>gi|147807720|emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]
Length = 1448
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+++ G + K V +L+DS THNF+ EL +L VM+ +G G C
Sbjct: 1 MKIKGMIGSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYEVMMGTGISVKGKGICR 60
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
I +QG+ ++ DF L DV+L WL T G
Sbjct: 61 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLG 96
>gi|449526327|ref|XP_004170165.1| PREDICTED: uncharacterized protein LOC101232744 [Cucumis sativus]
Length = 426
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNV----------MVASGERFSSLGTCL 51
+++ G + K V VL+D THNF+ +L + L++ ++ SG G C
Sbjct: 154 MKIRGVIEGKEVIVLVDCGATHNFISDKLVMTLHIPTKDTSNYGEILGSGTTIKGKGVCE 213
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
Q + L G + DF L G D++L QWL + G+ E
Sbjct: 214 QVKLSLNGWTVTADFLPLELGGVDMILGMQWLYSLGVTE 252
>gi|32483242|emb|CAE02543.1| OSJNBb0069N01.1 [Oryza sativa Japonica Group]
gi|38344504|emb|CAE05183.2| OSJNBa0013A04.20 [Oryza sativa Japonica Group]
Length = 1395
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
LIDS T F+ Q+ A + LNV VA+G++ + G ++ G D
Sbjct: 409 LIDSGSTPTFLSQDAAARVGRDPQPRSGLNVTVANGDKVACPGVFPDMPFQIAGEEFATD 468
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
Y+L GYD+VL TQWL+T G I
Sbjct: 469 VYVLTLGGYDLVLGTQWLATLGPI 492
>gi|147770944|emb|CAN69535.1| hypothetical protein VITISV_013569 [Vitis vinifera]
Length = 617
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCLQTLIKLQGVPL 62
+ V IDS THNF+ ++A L+++V A+ + G I LQG+P
Sbjct: 231 IVVFIDSGSTHNFISDKVAALLHLLVVPTAPFHVRVANDQPLKCQGRFHNIHILLQGIPF 290
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ FY LP D+VL QWL G +
Sbjct: 291 SITFYSLPLTSLDLVLGVQWLEQLGSV 317
>gi|115457202|ref|NP_001052201.1| Os04g0191000 [Oryza sativa Japonica Group]
gi|38346036|emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa Japonica Group]
gi|113563772|dbj|BAF14115.1| Os04g0191000 [Oryza sativa Japonica Group]
Length = 1463
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+D TH+F+ +E A ++ +VA+GER + G + G D
Sbjct: 355 LLDGGSTHSFIGEEAARRAGLPIQSSPRMTAIVANGERVACPGVIRDAAFTINGSTFHTD 414
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
+++P G+DVVL T+WL T G I
Sbjct: 415 LFVMPLAGFDVVLGTRWLGTLGPI 438
>gi|449511951|ref|XP_004164098.1| PREDICTED: uncharacterized protein LOC101232566 [Cucumis sativus]
Length = 707
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G+L+ + + VLID THNF+R+ L +L V++ SG G C
Sbjct: 411 MKVKGKLLGRQIIVLIDCEATHNFIREGLVEELQISTKSTTNYGVILGSGTAIKGKGVCE 470
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ + +I DF L G D +L QWL + G+ E
Sbjct: 471 AIEMMIGEWRVIDDFLPLELGGVDAILGMQWLYSLGITE 509
>gi|449479800|ref|XP_004155711.1| PREDICTED: uncharacterized protein LOC101230021 [Cucumis sativus]
Length = 1480
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G+L+ + + VLID THNF+ + L +L V++ SG G C
Sbjct: 1220 MKVKGKLLGREIIVLIDCGATHNFISESLVEELQISTKSTTNYGVILGSGTAIKGKGVCE 1279
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ + +I DF LL G D +L QWL + G+ E
Sbjct: 1280 AIEMMIGEWRVIDDFLLLELGGVDAILGMQWLYSLGITE 1318
>gi|12322948|gb|AAG51464.1|AC069160_10 gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
Length = 1447
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQT 53
V G + + + +LIDS THNF+ +A KL V VA G + + G
Sbjct: 371 VKGTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGF 430
Query: 54 LIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
KLQ D L+P +G D+VL QWL T G I
Sbjct: 431 TWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRI 466
>gi|449450213|ref|XP_004142858.1| PREDICTED: uncharacterized protein LOC101220049 [Cucumis sativus]
Length = 250
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+++ G + K V VL+D T NF+ +L L V++ SG G C
Sbjct: 27 MKIRGEIQGKEVIVLVDCGATQNFISDKLVATLQLPTKDTSNYGVILGSGTAIKGKGVCE 86
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
Q + L G + DF L G DV+L QWL + G+ E
Sbjct: 87 QVKLNLNGWMITTDFLPLELGGVDVILGMQWLYSLGVTE 125
>gi|124360392|gb|ABN08405.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCL 51
IR G++ V +L+DS NF+ + LA+ L + + G +LG C
Sbjct: 139 IRFQGKVREIPVLMLVDSGANKNFMSRRLALALGLRITETPVRRIRLGDGHVVPTLGECH 198
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+I +QGV +D L GYD+VL WL+ G
Sbjct: 199 GVIISVQGVEWEIDVMLFELRGYDLVLGMAWLTQIG 234
>gi|124360394|gb|ABN08407.1| Peptidase aspartic, active site [Medicago truncatula]
Length = 435
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCL 51
IR G++ V +L+DS NF+ + LA+ L + + G +LG C
Sbjct: 139 IRFQGKVREIPVLMLVDSGANKNFMSRRLALALGLRITETPVRRIRLGDGHVVPTLGECH 198
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+I +QGV +D L GYD+VL WL+ G
Sbjct: 199 GVIISVQGVEWEIDVMLFELRGYDLVLGMAWLTQIG 234
>gi|356529593|ref|XP_003533374.1| PREDICTED: uncharacterized protein LOC100812827 [Glycine max]
Length = 572
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCL 51
+RV G++ + + VLIDS +HNF+ ++ L +++ G R + G C
Sbjct: 401 MRVEGKIHNVDLLVLIDSGASHNFISPKVTTALGLVITPTVAKSIKLGDGHRLITNGVCK 460
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+++ G+ +IVD +L G D+VL WL T G
Sbjct: 461 GVNMQMGGIEVIVDALVLELGGMDMVLGVAWLRTLG 496
>gi|449479937|ref|XP_004155752.1| PREDICTED: uncharacterized protein LOC101232675 [Cucumis sativus]
Length = 436
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ----------ELAVKLNVMVASGERFSSLGTCL 51
+++ G + + V +LIDS T+NF+ + EL + V V G R G C
Sbjct: 164 MKLKGHVKGREVVILIDSGATNNFIHEAVAMEGGLSIELGTQFGVTVGDGTRCKGKGICR 223
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +L+ + +I DF ++ DVVL QWL T G ++
Sbjct: 224 KVEPRLKEMTVITDFLVVELGNIDVVLGMQWLDTTGTMK 262
>gi|293331925|ref|NP_001168083.1| uncharacterized protein LOC100381817 [Zea mays]
gi|223945897|gb|ACN27032.1| unknown [Zea mays]
Length = 117
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 6 GRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLI 55
G + H+ V +++DS +H+F++ +LA +L V VA+G R C T
Sbjct: 21 GIIHHQAVRIMVDSDSSHSFLKTKLATQLQGIVPLSVPIVVQVANGARLQCSAHCPATAW 80
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+Q DF +L YD +L WLS F
Sbjct: 81 SVQEFTFSTDFKILDVFSYDAILGIDWLSQFS 112
>gi|27764548|gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ----------ELAVKLNVMVASGERFSSLGTCL 51
IR G++ V +L+D + NF++ E A L V+V +G+ S+ G
Sbjct: 391 IRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQ 450
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
Q + +QG + V YLL G DV+L + WL+T G
Sbjct: 451 QLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLG 486
>gi|449496938|ref|XP_004160268.1| PREDICTED: uncharacterized protein LOC101232747 [Cucumis sativus]
Length = 701
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF----------SSLGTCL 51
+++ G + K V +LIDS T+NF+ Q L +L + + G RF G C
Sbjct: 302 MKLKGHVNGKEVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVNIGNGTRCEGRGICK 361
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KL+ + ++ DF + D+VL QWL + G ++
Sbjct: 362 RVKVKLKELTIVADFLAVELGKVDLVLGMQWLDSTGTMK 400
>gi|356514101|ref|XP_003525745.1| PREDICTED: uncharacterized protein LOC100809540 [Glycine max]
Length = 1232
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCLQ 52
RV G + +T+L+D THNFV+ +A L VMV G Q
Sbjct: 229 RVYGTVRRHQLTILVDGGSTHNFVQLRVAKFLGLPSTPMTPLPVMVGDGGVIHCDCRYPQ 288
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
I +QG D + LP G D+VL QWL G
Sbjct: 289 VSITIQGHQFTTDLFGLPLSGADLVLGVQWLRALG 323
>gi|124359710|gb|ABN06064.1| RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc
finger, CCHC-type; Peptidase aspartic, active site;
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 1297
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
I+++G + V VL+DS THNF+ Q+L K+N + + G + GTC
Sbjct: 179 IKLMGVIKEVPVVVLVDSGATHNFISQQLVHKMNWAVVDTPCMSIKLGDGSYSKTKGTCE 238
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ + V L +D L G D+VL +WL T G
Sbjct: 239 GLEVDVGDVHLEIDAQLFDLGGVDMVLGIEWLRTLG 274
>gi|449531517|ref|XP_004172732.1| PREDICTED: uncharacterized protein LOC101232451 [Cucumis sativus]
Length = 392
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G++ V VLID TH+F+ L L V++ SG G C
Sbjct: 54 MKVKGKIQGTEVVVLIDCGATHSFIVDNLVTSLKLPLTETSNCGVILGSGAAVKGKGICG 113
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
Q + + ++ F L EG DV+LD QWL + G+ E
Sbjct: 114 QVEVMVGEWKIVDSFLPLELEGVDVILDMQWLHSLGVTE 152
>gi|449449136|ref|XP_004142321.1| PREDICTED: uncharacterized protein LOC101219643 [Cucumis sativus]
Length = 648
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF----------SSLGTCL 51
+++ G + + V +LIDS T+NF+ Q L +L + + G RF G C
Sbjct: 385 MKLKGHVNGREVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVTIGNGNQCEGSGICK 444
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KL+ + ++ DF + D+VL QWL + G ++
Sbjct: 445 RVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMK 483
>gi|9294238|dbj|BAB02140.1| unnamed protein product [Arabidopsis thaliana]
Length = 904
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+RV G +K++ +LIDS T NF+ +A KL V VA G + G
Sbjct: 234 MRVKGMYDNKILFILIDSGSTFNFIDSTMAKKLGCKVEPTGLTRVSVADGRKLRVDGKIT 293
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
KLQ D ++P + D+VL QWL+T G I
Sbjct: 294 DFTWKLQTTSFASDILMIPLQVIDMVLGVQWLATLGRI 331
>gi|449470602|ref|XP_004153005.1| PREDICTED: uncharacterized protein LOC101220479 [Cucumis sativus]
Length = 583
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF----------SSLGTCL 51
+++ G + + V +LIDS T+NF+ Q L +L + + G RF G C
Sbjct: 350 MKLKGHVNGREVVILIDSGATNNFISQVLVDELQLSIDPGTRFGVTIGNGNQCEGSGICK 409
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +KL+ + ++ DF + D+VL QWL + G ++
Sbjct: 410 RVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMK 448
>gi|449465222|ref|XP_004150327.1| PREDICTED: uncharacterized protein LOC101216833 [Cucumis sativus]
Length = 2712
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G++ + V +LID THNF+ ++ +L+ V++ SG G C
Sbjct: 1330 MKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICE 1389
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
++L+G + +F L G D VL+ QWL + G+ E
Sbjct: 1390 GIELELEGWKVEANFLPLELGGVDGVLEMQWLYSLGVTE 1428
>gi|227438239|gb|ACP30609.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2726
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQ 52
++ G++ V V++DS +HNF+ + KL ++++ +G +SLG C +
Sbjct: 1587 KLYGKIQKTDVIVMLDSGASHNFITPSIVTKLKLKVCAETSFDILLGNGASVNSLGVCRE 1646
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+L DF L DV+L QWL T G E
Sbjct: 1647 VSFQLADATFTSDFIALELGMVDVILGIQWLETLGRCE 1684
>gi|147854459|emb|CAN78588.1| hypothetical protein VITISV_043911 [Vitis vinifera]
Length = 2232
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQEL----------AVKLNVMVASGERFSSLGTCL 51
+++ G + K V +L+DS THNF+ EL VM+ +G G C
Sbjct: 1059 MKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGICR 1118
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
I +QG+ ++ DF L DV+L WL T G ++
Sbjct: 1119 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVK 1157
>gi|225016150|gb|ACN78974.1| retrotransposon protein [Glycine max]
gi|225016158|gb|ACN78981.1| retrotransposon protein [Glycine max]
Length = 1261
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 25 FVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
F++ + L V V +GE C + + +Q +VDF++LP G DVVL QWL
Sbjct: 447 FLQPQTTSTLRVTVGNGEELQCNQVCPEVAVHIQAHTFLVDFHILPICGADVVLGVQWLK 506
Query: 85 TFG 87
+ G
Sbjct: 507 SLG 509
>gi|78183245|emb|CAJ00275.1| hypothetical protein [Lotus japonicus]
Length = 1112
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
M+R+ G L K + VLID+ THNF+ Q+L + + + VA G G C
Sbjct: 377 MMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKIKCLQPVKITVADGGIIQGTGWC 436
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+QG + +P D++L QWL G I
Sbjct: 437 EGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKI 475
>gi|78183241|emb|CAJ00278.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
M+R+ G L K + VLID+ THNF+ Q+L + + + VA G G C
Sbjct: 377 MMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKIKCLQPVKITVADGGIIQGTGWC 436
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+QG + +P D++L QWL G I
Sbjct: 437 EGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKI 475
>gi|78183249|emb|CAJ00277.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
M+R+ G L K + VLID+ THNF+ Q+L + + + VA G G C
Sbjct: 377 MMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKIKCLQPVKITVADGGIIQGTGWC 436
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+QG + +P D++L QWL G I
Sbjct: 437 EGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKI 475
>gi|78183243|emb|CAJ00274.1| hypothetical protein [Lotus japonicus]
Length = 1508
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
M+R+ G L K + VLID+ THNF+ Q+L + + + VA G G C
Sbjct: 377 MMRLTGWLGKKRIFVLIDTGSTHNFINQKLCHEGLSKIKCLQPVKITVADGGIIQGTGWC 436
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+QG + +P D++L QWL G I
Sbjct: 437 EGISWKMQGYTFTDNAIAIPLSSCDLILGMQWLRQRGKI 475
>gi|77551695|gb|ABA94492.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 306
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLN-----------VMVASGERFSSLGTCLQTLIKLQGVP 61
V LIDS THNF+ ELA L V+VA+G+R S G C + + G
Sbjct: 195 VVSLIDSGSTHNFIHTELAHHLRLRLEPVRDGLRVVVANGDRIVSPGRCHNLPLLIDGEI 254
Query: 62 LIVDFYLLPFEGYDVVLDTQWL 83
VD + L D++L T+WL
Sbjct: 255 FRVDCFALDLCAVDIILGTEWL 276
>gi|449472371|ref|XP_004153573.1| PREDICTED: uncharacterized protein LOC101213561, partial [Cucumis
sativus]
Length = 764
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G++ + V +LID THNF+ ++ +L+ V++ SG G C
Sbjct: 417 MKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICE 476
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
++L+G + +F L G D VL QWL + G+ E
Sbjct: 477 GIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVTE 515
>gi|449457325|ref|XP_004146399.1| PREDICTED: uncharacterized protein LOC101219499 [Cucumis sativus]
Length = 718
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G++ + V +LID THNF+ ++ +L+ V++ SG G C
Sbjct: 390 MKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICE 449
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
++L+G + +F L G D VL QWL + G+ E
Sbjct: 450 GIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVTE 488
>gi|261865347|gb|ACY01928.1| hypothetical protein [Beta vulgaris]
Length = 1583
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS-SLGT---------CL 51
+++ G + + V V++D THNF+ + +L + ++S F SLGT C
Sbjct: 420 LKMEGTIYGQKVIVMVDPGATHNFISLDTVRRLQIPISSSRPFGVSLGTGAEAHGQGECK 479
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ LQGV ++ D+ L D++L QWL G
Sbjct: 480 AVPLHLQGVCVMEDYLPLTLGNSDLILGVQWLEKLG 515
>gi|307136175|gb|ADN34016.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
Length = 1185
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
++ G++ + V V+ID THNF+ L ++ V++ SG+ G C
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
++ L G+ ++ DF L D+VL QWL G
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQG 465
>gi|116310275|emb|CAH67280.1| OSIGBa0111L12.7 [Oryza sativa Indica Group]
Length = 940
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
IR+ G + + +LIDS TH+FV Q++ +KL+ V VA G TC
Sbjct: 303 IRLRGWVQGIEILMLIDSGSTHSFVYQQIGLKLSGVKAMPVPARVKVADG----GFLTCS 358
Query: 52 QTLIK----LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+I+ QG+ +F LLP Y+V+L+ WL F
Sbjct: 359 LHIIECDWLTQGIHFKSNFRLLPLGAYNVILEMDWLERF 397
>gi|147822176|emb|CAN68077.1| hypothetical protein VITISV_042019 [Vitis vinifera]
Length = 480
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 16 LIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYD 75
L+ +RT + ++ + V G R +S T Q+ +QG VD L+P GYD
Sbjct: 253 LVVXKRTRCLI--QITNPMKAAVVDGTRITSDATYRQSTWNMQGKEFQVDLRLIPLGGYD 310
Query: 76 VVLDTQWLSTFGLI 89
+VL QWL+ G I
Sbjct: 311 MVLGIQWLAELGPI 324
>gi|449523988|ref|XP_004169005.1| PREDICTED: uncharacterized protein LOC101225033 [Cucumis sativus]
Length = 307
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V G L K V +L+D THN + ++L +L V++ SG G C
Sbjct: 178 MKVNGWLQGKEVIILVDRGATHNLISEKLVKELQLNTKDTSNYAVILGSGTTIKGKGVCE 237
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ + +I +F L G DV+L QWL + G+ E
Sbjct: 238 AVELMIGDWRVIDEFLPLELGGVDVILGMQWLYSLGITE 276
>gi|12322951|gb|AAG51467.1|AC069160_13 hypothetical protein, 5' partial [Arabidopsis thaliana]
Length = 368
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+RV G +V+++LID TH+F+ ++A KL V VA G
Sbjct: 209 MRVKGLYEKQVLSILIDPDSTHSFMDSKVAEKLKCVLKPASMAQVSVADGRLLGLNAKID 268
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +L+G L D ++ G D+VL QWL T G I
Sbjct: 269 KFQWELRGTQLQADLMVITLRGCDMVLGAQWLETLGPI 306
>gi|12324281|gb|AAG52110.1|AC023064_3 hypothetical protein; 60873-62443 [Arabidopsis thaliana]
Length = 508
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+RV G +V+++LID TH+F+ ++A KL V VA G
Sbjct: 349 MRVKGLYEKQVLSILIDPDSTHSFMDSKVAEKLKCVLKPASMAQVSVADGRLLGLNAKID 408
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +L+G L D ++ G D+VL QWL T G I
Sbjct: 409 KFQWELRGTQLQADLMVITLRGCDMVLGAQWLETLGPI 446
>gi|449526146|ref|XP_004170075.1| PREDICTED: uncharacterized protein LOC101232562, partial [Cucumis
sativus]
Length = 497
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSL---GTCLQTLIKLQ 58
++V G+L+ K + VL+D THNF+ + L +L + S F + GT ++ +
Sbjct: 61 MKVKGKLLGKEIIVLVDCGATHNFISESLVEELQISTKSTTNFGVILGSGTAIKGKGVCE 120
Query: 59 GVPLIV-------DFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +I+ DF L D +L QWL + G+ E
Sbjct: 121 AIEMIIGEWRVIDDFLPLELGSVDAILGMQWLYSLGITE 159
>gi|6466937|gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
+++ G + + V +L+DS T NF+ + L + V V G S G C+
Sbjct: 513 MKMRGYIGNTKVVLLVDSGATCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCV 572
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+++QG+ + D+YL D+VL WL+ G
Sbjct: 573 DIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGLG 608
>gi|259490591|ref|NP_001159320.1| uncharacterized protein LOC100304412 [Zea mays]
gi|223943397|gb|ACN25782.1| unknown [Zea mays]
Length = 725
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQEL----------AVKLNVMVASGERFSSLGTCL 51
+R +G ++ K + +L+DS TH+F+ Q A V VA+G S
Sbjct: 466 MRFLGSMLGKDILILVDSGSTHSFINQSTVQHHTIVPVAATPFRVQVANGGLLSCDKMIP 525
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ +QG D +LP +D++L WL + +E
Sbjct: 526 HAVWSIQGCEFSQDLRVLPLPKFDLILGMDWLEFYSPME 564
>gi|147802690|emb|CAN72998.1| hypothetical protein VITISV_043958 [Vitis vinifera]
Length = 1078
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQG 59
H+++ VLIDS THNF+ + + L NV VA+G+ G + LQG
Sbjct: 274 HELI-VLIDSGSTHNFINERIVELLQLPMVPTEPFNVKVANGDPLKCQGRFENVSVLLQG 332
Query: 60 VPLIVD-FYLLPFEGYDVVLDTQWLSTFGLI 89
+P + Y LP G D+VL L G +
Sbjct: 333 IPFTLSTLYSLPLIGLDMVLGVHXLEQLGTV 363
>gi|357438009|ref|XP_003589280.1| B3 domain-containing protein REM16 [Medicago truncatula]
gi|355478328|gb|AES59531.1| B3 domain-containing protein REM16 [Medicago truncatula]
Length = 423
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVP 61
I++ GR+ V +L+DS THNF+ ++L ++L M + S G Q ++++ +
Sbjct: 292 IKLRGRVEGVPVLLLVDSGATHNFISKKLVIELANMYKT----RSTGERKQVMVEMGKLK 347
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTFG 87
L + + + D+VL T WL++ G
Sbjct: 348 LEIGALVFDLDKVDIVLGTTWLNSIG 373
>gi|356551468|ref|XP_003544097.1| PREDICTED: uncharacterized protein LOC100808479 [Glycine max]
Length = 600
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 37 MVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
MV +G L C I +QG IVDF+++ G D+VL QWL + GLI
Sbjct: 1 MVRNGNELDCLHLCNNVSIHVQGHVFIVDFHVMSLTGADLVLGVQWLKSLGLI 53
>gi|387169525|gb|AFJ66186.1| hypothetical protein 11M19.5 [Arabidopsis halleri]
Length = 1557
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS---SLGTCLQTLIK-- 56
+R++G+ + + +D THNF+ ++A ++N + + +LG TL +
Sbjct: 473 MRLMGQYGKHKLHIFVDPGSTHNFIDIKVAKEINCKLEGTRPMTVDAALGGKTVTLFRSK 532
Query: 57 -----LQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+QG + LP + +D+VL QWL+T G I
Sbjct: 533 DFTWRMQGYSFTTEVRTLPLDHWDIVLGVQWLATLGPI 570
>gi|3810596|gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 945
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSL---GTCLQTLIKLQ 58
IRV + + LI+S THNF+ ++ +N+ + + F+ G L + +
Sbjct: 318 IRVRATIHRNRLIALINSGSTHNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYE 377
Query: 59 GVPLI-------VDFYLLPFEGYDVVLDTQWLSTFG 87
+P++ V Y LP G D+ + QWLST G
Sbjct: 378 AIPVVMGGVVFPVTLYALPLMGLDLAMGVQWLSTLG 413
>gi|387965727|gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
Length = 1631
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS----------SLGTCLQTLIKLQG 59
H+VV V+ID THNF+ + KL + V E F G C + L G
Sbjct: 492 HEVV-VMIDPGATHNFLSLKAIDKLGIPVTESEEFGVSLGDGQAVRGTGICRAVALYLDG 550
Query: 60 VPLIV-DFYLLPFEGYDVVLDTQWLSTFGLI 89
++V DF L DV+L QWL T G +
Sbjct: 551 GLVVVEDFLPLGLGNSDVILGVQWLETLGTV 581
>gi|356573714|ref|XP_003555002.1| PREDICTED: uncharacterized protein LOC100810380 [Glycine max]
Length = 1273
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELA--VKL--------NVMVASGERFSSLGTCL 51
IR + + V VL+D+ + NF++ +A KL VMV +G + +G
Sbjct: 315 IRFVAHINTLPVKVLVDNGSSDNFLQPRVAKFFKLPIEPSPLFKVMVDNGNYMTPIGMIR 374
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ I+ QG + +LLP G D++L WL T G
Sbjct: 375 ELSIQAQGNRFQLPVFLLPISGADLILGAIWLKTLG 410
>gi|38346427|emb|CAD40214.2| OSJNBa0019J05.12 [Oryza sativa Japonica Group]
Length = 1817
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 15 VLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPLIV 64
+L+DS TH+F+ + + +KL +V +A GE S +QG I
Sbjct: 610 MLVDSGSTHSFMEESIGLKLAGVKPLRSKLSVKLADGETLSCSYEVTNCRWWMQGHNFIN 669
Query: 65 DFYLLPFEGYDVVLDTQWLSTF 86
+F LL GYD++L WL F
Sbjct: 670 NFRLLNLGGYDIILGMDWLEQF 691
>gi|38345213|emb|CAD40196.2| OSJNBb0043H09.2 [Oryza sativa Japonica Group]
Length = 1409
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQE----------LAVKLNVMVASGERFSSLGTCL 51
IR+ G + + +L+DS TH+FV + L L V +A G + S C
Sbjct: 432 IRLRGWVQGTELLMLVDSGSTHSFVDERIGSTFIGLKHLPQPLKVQIADGGQLS----CS 487
Query: 52 QTLIK----LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
Q + K +QG DF LLP YD +L WL F
Sbjct: 488 QVIPKCDWWIQGHNFSSDFRLLPLGSYDAILGMDWLQQF 526
>gi|57834110|emb|CAE04775.3| OSJNBa0079C19.16 [Oryza sativa Japonica Group]
Length = 1002
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQE----------LAVKLNVMVASGERFSSLGTCL 51
IR+ G + + +L+DS TH+FV + L L V +A G + S C
Sbjct: 747 IRLRGWVQGTELLMLVDSGSTHSFVDERIGSTFIGLKHLPQPLKVQIADGGQLS----CS 802
Query: 52 QTLIK----LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
Q + K +QG DF LLP YD +L WL F
Sbjct: 803 QVIPKCDWWIQGHNFSSDFRLLPLGSYDAILGMDWLQQF 841
>gi|77555174|gb|ABA97970.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1548
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQG 59
++V+ +L+DS TH+F+ L +L +V VA+GE Q +QG
Sbjct: 427 NQVIIILVDSGSTHSFIDAGLCHRLQLSTESIQPTSVRVANGETLCCEAKVPQFAWWVQG 486
Query: 60 VPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+LP GYD+VL WL+ F
Sbjct: 487 HEFSFPMRVLPMGGYDLVLGMDWLTQF 513
>gi|147811718|emb|CAN77256.1| hypothetical protein VITISV_008352 [Vitis vinifera]
Length = 1365
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 13 VTVLIDSRRTHNFV----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
+T+LIDS THNF+ + E + +V+VA+GER SSLG C + LQ +P+
Sbjct: 606 LTILIDSGSTHNFLHHKFAKIIGLKSERSCLFSVVVANGERLSSLGRCNGVKLFLQDIPI 665
>gi|359372828|gb|AEV42261.1| hypothetical protein [Beta vulgaris]
Length = 1396
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS-SLGT---------CL 51
+++ G + + V V+ID THNFV +LN+ V+ + F SLGT CL
Sbjct: 378 LKLRGTIYGEAVIVMIDPGATHNFVSIHTVERLNIPVSHAKGFEVSLGTGQEVRGTGECL 437
Query: 52 QTLIKLQGVPLIVDFYL--LPFEGYDVVLDTQWLSTFG 87
+ +QGV ++ +L P DV++ QWL G
Sbjct: 438 AVPLMVQGV---MENFLPPPPLGNSDVIMGIQWLEKLG 472
>gi|110288688|gb|ABB46921.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1068
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++GVP
Sbjct: 610 TVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIEIEGVPFP 669
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 670 SSLILLESKDLDVILGMDWLS 690
>gi|19881768|gb|AAM01169.1|AC113336_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1449
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++GVP
Sbjct: 352 TVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIEIEGVPFP 411
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 412 SSLILLESKDLDVILGMDWLS 432
>gi|18568269|gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQEL----------AVKLNVMVASGERFSSLGTCL 51
+++ G + + + +LIDS +H F+ +L A L V VA+G + L
Sbjct: 455 LKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVTSMASTLQVQVANGAMVTCHYKLL 514
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
Q ++Q D LP YD+V+ WL +F
Sbjct: 515 QAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESF 549
>gi|116830535|gb|ABK28225.1| unknown [Arabidopsis thaliana]
Length = 260
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 8 LVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKL 57
L HKVV V IDS T NF+ ELA L +V++ + S+GTCL + +
Sbjct: 57 LDHKVV-VAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWV 115
Query: 58 QGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG 87
Q V + +F LL DV+L +WLS G
Sbjct: 116 QEVEITENFLLLDLAKTDVDVILGYEWLSKLG 147
>gi|91805527|gb|ABE65492.1| hypothetical protein At3g29750 [Arabidopsis thaliana]
Length = 259
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 8 LVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKL 57
L HKVV V IDS T NF+ ELA L +V++ + S+GTCL + +
Sbjct: 57 LDHKVV-VAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWV 115
Query: 58 QGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG 87
Q V + +F LL DV+L +WLS G
Sbjct: 116 QEVEITENFLLLDLAKTDVDVILGYEWLSKLG 147
>gi|77551679|gb|ABA94476.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 940
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
+R+ G + H + +L+DS TH+FV L KL V +A G +
Sbjct: 406 LRLQGLMQHHQIMLLVDSGSTHSFVSAALDDKLGGKQRAVPAIKVRIADGGILHCNKEIV 465
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
L +QG + +LP YDV+L WL
Sbjct: 466 DCLWLVQGESFLTSLKVLPLGNYDVILGMDWL 497
>gi|323134589|gb|ADX31265.1| unknown [Triticum aestivum]
Length = 1231
Score = 41.6 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R++G++ + + +L+DS +H+F+ + +L V +A G S G
Sbjct: 459 VRLLGQIGGQEMLILVDSGSSHSFLSDTVVARLQLPIQAMSTVAVKIADGGTLSCSGVVP 518
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ K QG + D +L YD+++ WL + G
Sbjct: 519 ECRWKTQGHEFVTDLRVLALGCYDMIVGMDWLESCG 554
>gi|38344579|emb|CAE05537.2| OSJNBa0053B21.11 [Oryza sativa Japonica Group]
Length = 1251
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS T++F+ + A+K ++VA G SS Q +QG P
Sbjct: 331 LVDSGSTNSFMNYDFAIKSGCEILEAGNRRILVAGGGMISSSTKTEQLSYTVQGHPFERV 390
Query: 66 FYLLPFEGYDVVLDTQWL 83
F L+P +G+DV+L W+
Sbjct: 391 FQLIPLKGFDVILGADWI 408
>gi|38344156|emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]
Length = 1373
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPL 62
V L+DS T+ F+ E A++ VMVA G +S K+QG
Sbjct: 501 VVALVDSGSTNTFMNYEFALRSGCEIIEFDHNRVMVAGGGILNSTAKTEVIQYKVQGYLF 560
Query: 63 IVDFYLLPFEGYDVVLDTQWL 83
F L+P +GYD+VL W+
Sbjct: 561 GKAFQLIPLKGYDIVLGADWI 581
>gi|449524806|ref|XP_004169412.1| PREDICTED: uncharacterized protein LOC101228221 [Cucumis sativus]
Length = 703
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS----------SLGTCL 51
I++ G + + V VL+D HNF+ +E+ +L + V + + + + G C
Sbjct: 317 IKIKGEIRNCEVVVLVDGGAIHNFISEEVVKELKIPVETLDAYGVVLGTGGVVRATGMCK 376
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ + + + DF LP DV L WL T G +
Sbjct: 377 SVNLTIVNLSITHDFLPLPLGSADVNLGVTWLETLGKV 414
>gi|62733811|gb|AAX95920.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734057|gb|AAX96166.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550628|gb|ABA93425.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 919
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL L I++QGVP +
Sbjct: 344 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSLSVRIEIQGVPFL 403
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 404 ANLILLESKDLDVILGMDWLARYKGVID 431
>gi|18657020|gb|AAL78107.1|AC093568_17 Putative polyprotein [Oryza sativa]
gi|21321760|gb|AAM47295.1|AC122146_14 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430576|gb|AAP52470.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1819
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 708 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 766
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL +G DV+L WL+ F G+I+
Sbjct: 767 LANLILLDSKGLDVILGMDWLTKFKGVID 795
>gi|116308998|emb|CAH66117.1| OSIGBa0146N20.2 [Oryza sativa Indica Group]
Length = 1521
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL +G DV+L WL+ F G+I+
Sbjct: 469 LANLILLDSKGLDVILGMDWLTKFKGVID 497
>gi|108862189|gb|ABA96448.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
gi|215767578|dbj|BAG99806.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 649
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 15 VLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIV 64
+L+DS TH+F+ +E+ +KL+ V +A G S +QG
Sbjct: 5 MLVDSGSTHSFIDKEVGLKLSGIQKLKQPLIVRIADGGTMSCTHEITNCKWWMQGYQFCN 64
Query: 65 DFYLLPFEGYDVVLDTQWLST 85
+F +LP YD++L WL +
Sbjct: 65 NFRMLPLGNYDIILGMDWLES 85
>gi|449445212|ref|XP_004140367.1| PREDICTED: uncharacterized protein LOC101210426 [Cucumis sativus]
Length = 497
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 21 RTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDT 80
RT + Q+ K V + G G C + +KL + ++ DF + DVVL
Sbjct: 185 RTILGLHQKEKTKFGVTIGDGTALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGM 244
Query: 81 QWLSTFGLI 89
QWLST G +
Sbjct: 245 QWLSTTGFM 253
>gi|10140673|gb|AAG13508.1|AC068924_13 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1608
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERF---SSLG 48
IR+ G + + + +L+DS TH+F+ +L +L V VA G + S L
Sbjct: 439 IRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVADGSQLFCDSFLP 498
Query: 49 TCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
C QG DF LLP YD +L WL F
Sbjct: 499 NCSWWS---QGHSFTSDFRLLPLGSYDAILGMDWLEQF 533
>gi|242093834|ref|XP_002437407.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
gi|241915630|gb|EER88774.1| hypothetical protein SORBIDRAFT_10g026363 [Sorghum bicolor]
Length = 1609
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPL 62
+T L+DS THNF+ A + +V VA+G+R G +++
Sbjct: 519 LTALLDSGSTHNFISSAAAHRAGLHFKDSEGAHVTVANGDRVLCRGLARGVNLQIGMEVF 578
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
VD Y +P + D+VL WL T G I
Sbjct: 579 KVDCYAIPLDSCDMVLGIAWLRTLGPI 605
>gi|15230067|ref|NP_189618.1| aspartyl protease-like protein [Arabidopsis thaliana]
gi|332644083|gb|AEE77604.1| aspartyl protease-like protein [Arabidopsis thaliana]
Length = 421
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 8 LVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKL 57
L HKVV V IDS T NF+ ELA L +V++ + S+GTCL + +
Sbjct: 131 LDHKVV-VAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWV 189
Query: 58 QGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG 87
Q V + +F LL DV+L +WLS G
Sbjct: 190 QEVEITENFLLLDLAKTDVDVILGYEWLSKLG 221
>gi|108707255|gb|ABF95050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DSR +H+F+ R +L V +L ++ G ++ I+
Sbjct: 686 LVHSIPATILFDSRASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 745
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 746 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 775
>gi|108862641|gb|ABG22014.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1422
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
LIDS T F+ QE A+K V+VA G S + +QG
Sbjct: 432 LIDSGSTSTFMDQEFAIKSQCPLKNSEVKKVVVARGGELRSEVQVPEIQYVIQGEQFSNP 491
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
F L+P +GYD++L W+ + I
Sbjct: 492 FNLIPLKGYDIILGADWIFQYSAI 515
>gi|255555239|ref|XP_002518656.1| conserved hypothetical protein [Ricinus communis]
gi|223542037|gb|EEF43581.1| conserved hypothetical protein [Ricinus communis]
Length = 177
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQT 53
V G + ++ V L++S TH+F+ + KLN V G + S CL
Sbjct: 54 VKGLVENQHVLNLLNSGSTHSFLHNRVVEKLNCNLVQATPFCVSTGGGNKLISNQKCLNF 113
Query: 54 LIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+ + +F LL + YD+VL W+ +F +
Sbjct: 114 EWKMNNLSFSFNFRLLNIDEYDLVLGADWMRSFNHV 149
>gi|224133300|ref|XP_002321533.1| predicted protein [Populus trichocarpa]
gi|222868529|gb|EEF05660.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF-----------SSLGT 49
++RV ++ + + LID TH FV ++ ++ + + S +RF +S G
Sbjct: 125 IMRVRAKVGNLTIIPLIDIGSTHYFVPSKMTKRMGIEI-SAQRFMRVKVVDDTEINSEGE 183
Query: 50 CLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
K+Q + +LP GYDVVL QWL G I
Sbjct: 184 YADFKFKIQRNHFVSQAIVLPLGGYDVVLGIQWLQELGSI 223
>gi|32489310|emb|CAE03706.1| OSJNBa0060B20.14 [Oryza sativa Japonica Group]
Length = 3200
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
IR+ G L V +L+DS TH+FV +L +KL V VA G +
Sbjct: 1836 IRLRGWLQGIEVLMLVDSGSTHSFVDHQLGLKLTGVKSMASPARVKVADGGHLNCSLYVN 1895
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
QG+ +F LL YDV+L WL F
Sbjct: 1896 NCDWLTQGIHFKSNFRLLSLGTYDVILGMDWLEQF 1930
>gi|62734395|gb|AAX96504.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550471|gb|ABA93268.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1506
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELAVKLNV---MVASGERFSSLGTCLQTLIKLQGVPLI 63
LVH + +TVL DS TH+F+ A +L++ ++ R S G+ + T + +GV LI
Sbjct: 410 LVHSIPLTVLFDSGATHSFMSTLKAKQLDLKTEFLSDAMRIQSPGSTMVTKLLCKGVELI 469
Query: 64 VD-------FYLLPFEGYDVVLDTQWLS 84
+D LL G +V+L WL+
Sbjct: 470 IDGVKFKANLILLDTLGLNVILGMDWLT 497
>gi|32492359|emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
Length = 1586
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS T F+ Q+ AV+ V+VA G S + + ++QG
Sbjct: 501 LVDSGSTSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSEVQVPELVYQIQGETFSNK 560
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
F ++P +GYDV+L W+ + I
Sbjct: 561 FNIIPLKGYDVILGADWIYKYSPI 584
>gi|77554722|gb|ABA97518.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1524
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 599 TVLFDSGATHSFISMKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFIPSVLIEIQRSPF 657
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 658 LANLILLESKDLDVILGMDWLTKFKGVID 686
>gi|77550774|gb|ABA93571.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1383
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL C I+
Sbjct: 370 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRCPSVKIE 429
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 430 IQKVPFLANLILLESKDLDVILGMDWLARYKGVID 464
>gi|77550665|gb|ABA93462.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1687
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++QG P
Sbjct: 622 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQGSPF 680
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + +V+L WL+ F G+I+
Sbjct: 681 LANLILLESKDLNVILGMDWLTKFKGVID 709
>gi|27552560|gb|AAO19383.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710558|gb|ABF98353.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1770
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGT-CLQTL---------IKLQGVPLI 63
TVL DS TH+F+ A + V R + T C Q L I++QGVP +
Sbjct: 657 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPCNQALSLQRSPSVRIEIQGVPFL 716
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 717 ANLILLESKDLDVILGMDWLARYKGVID 744
>gi|78707944|gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1778
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A+K + V S G + S C I+++ VP
Sbjct: 681 TVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFP 740
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 741 SSLILLESKDLDVILGMDWLS 761
>gi|4325361|gb|AAD17358.1| contains similarity to reverse transcriptase (Pfam: PF00078,
Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers
(Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis
thaliana]
Length = 901
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 15 VLIDSRRTHNFVRQELAVKLNVMVASGERFSSL----GTCLQTL-------IKLQGVPLI 63
VL DS +H F+ E A + N+ GE+F ++ G L L I+++G +
Sbjct: 228 VLFDSGASHCFITFESASRGNIRGDPGEQFGAVKVDGGQFLAVLGRAKGVDIQIEGESMP 287
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF 86
D + P E YDV+L WL +
Sbjct: 288 ADLIISPVELYDVILRMDWLDLY 310
>gi|62733109|gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1513
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS F+ QE A++ + V+VA G S L ++QG
Sbjct: 453 LVDSGSPSTFMDQEYAIRNDCPLVSTDSKKVVVAGGGELKSEVQVPDILYQIQGETFSNK 512
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
F L+P +GYD++L W+ + I
Sbjct: 513 FNLIPLKGYDIILGADWIYKYSPI 536
>gi|108864085|gb|ABA91843.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1411
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 16 LIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
L+DS F+ QE A++ + V+VA G S L ++QG
Sbjct: 351 LVDSGSPSTFMDQEYAIRNDCPLVSTDSKKVVVAGGGELKSEVQVPDILYQIQGETFSNK 410
Query: 66 FYLLPFEGYDVVLDTQWLSTFGLI 89
F L+P +GYD++L W+ + I
Sbjct: 411 FNLIPLKGYDIILGADWIYKYSPI 434
>gi|38347240|emb|CAE05433.2| OSJNBa0059H15.4 [Oryza sativa Japonica Group]
Length = 407
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
R+ G + V +LIDS +H+F+ ++A K + LQ ++ ++GV
Sbjct: 86 RIKGCIQGTEVLMLIDSGSSHSFLDTQVAHKFQGVQP-----------LQKVLSVKGVGF 134
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
DF LL YDV+L WL T G +
Sbjct: 135 HTDFKLLSLGVYDVILGMDWLVTLGTM 161
>gi|77552523|gb|ABA95320.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 584
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 16 LIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
LIDS T F+ E AVK V+VA G S + K+QGV +
Sbjct: 509 LIDSGSTGTFMTHEFAVKCKCPIATSTIKKVIVAGGGELKSNLVVPEVAYKIQGVKFVNA 568
Query: 66 FYLLPFEGYDVVL 78
F L+ +GYDV+L
Sbjct: 569 FSLITLKGYDVIL 581
>gi|307136196|gb|ADN34034.1| gypsy/ty3 element polyprotein [Cucumis melo subsp. melo]
Length = 473
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQ 52
++ GR+ + + +++D THNF+ +L LN V++ S + C
Sbjct: 360 KIKGRVEDREIVIMVDCGATHNFISLKLVESLNLPMAAITNYGVIMGSEKAVQGREMCKG 419
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ L + ++ DF L D+VL QWL G
Sbjct: 420 ITVGLPVITIVEDFLPLELGNLDMVLGMQWLQKQG 454
>gi|116311087|emb|CAH68016.1| H0807C06-H0308C08.3 [Oryza sativa Indica Group]
Length = 1521
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V + G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHIP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|357450377|ref|XP_003595465.1| hypothetical protein MTR_2g048010 [Medicago truncatula]
gi|355484513|gb|AES65716.1| hypothetical protein MTR_2g048010 [Medicago truncatula]
Length = 468
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 16 LIDSRRTHNFVRQELAVKLNVMV------------ASGERFSSLGTCLQTLIKLQGVPLI 63
+ID+ TH F+ E A KL + V A G +SL CL+ I + G +
Sbjct: 216 IIDTGATHCFIAIECAYKLGLDVSDMKGEMVVETPAKGSVTTSL-VCLRCPISMFGRDFV 274
Query: 64 VDFYLLPFEGYDVVLDTQWL 83
+D LP G DV+ WL
Sbjct: 275 IDLVCLPLTGMDVIFGMNWL 294
>gi|38344348|emb|CAD40170.2| OSJNBa0061A09.9 [Oryza sativa Japonica Group]
Length = 1653
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G SS+ I++QG P
Sbjct: 608 TVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTP-GNSSSSVQFSPSITIEIQGSPF 666
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 667 LANLILLESKDLDVILGMDWLTKFKGVID 695
>gi|77551464|gb|ABA94261.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1369
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCL 51
+R++G++ K + +L+DS T +F+ ++LA K+ V VA G
Sbjct: 365 MRMLGQIQGKEILILVDSGSTASFISKKLAAGLVGVQGLPTKVQVKVADGAVLHCQSVIQ 424
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
QG DF +L YDV+L WL
Sbjct: 425 NCEWVSQGHMFCTDFKVLALGNYDVILGMDWL 456
>gi|32489198|emb|CAE04383.1| OSJNBa0027G07.25 [Oryza sativa Japonica Group]
gi|38347092|emb|CAE02564.2| OSJNBa0006M15.7 [Oryza sativa Japonica Group]
Length = 1807
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ GE ++ I+
Sbjct: 722 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGEVMTAKYYSPAVPIE 781
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL DV+L WL+ F
Sbjct: 782 IQGIPFPSDLILLDTRNLDVILGMNWLAQF 811
>gi|22758322|gb|AAN05526.1| polyprotein [Oryza sativa Japonica Group]
Length = 1471
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 573 TVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTP-GNSSTSVSYSPSVLIEIQRSPF 631
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ +F LL + DV+L WL+ F G+I+
Sbjct: 632 LANFILLESKDLDVILGMDWLTKFKGVID 660
>gi|116311090|emb|CAH68019.1| H0807C06-H0308C08.6 [Oryza sativa Indica Group]
Length = 1260
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A L + V S G + S C I+++ VP
Sbjct: 246 TVLFDSGATHSFLSKSFASNLGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 305
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 306 SSLNLLESKDLDVILGMDWLS 326
>gi|110289210|gb|ABG66123.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1291
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 393 TVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTP-GNSSTSVSYSPSVLIEIQRSPF 451
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ +F LL + DV+L WL+ F G+I+
Sbjct: 452 LANFILLESKDLDVILGMDWLTKFKGVID 480
>gi|110289660|gb|AAP55181.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1459
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
IR+IG + + +LIDS TH+F+ + + K L+V +A G
Sbjct: 615 IRLIGWVQGTELLMLIDSGSTHSFMDETVGSKMVGVSPLRKPLSVQLADGGSLLCSHEIA 674
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG +F LL GYD++L WL F
Sbjct: 675 NCKWWMQGHSFSSNFRLLNLGGYDIILGMDWLEQF 709
>gi|222636869|gb|EEE67001.1| hypothetical protein OsJ_23913 [Oryza sativa Japonica Group]
Length = 877
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 34 LNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
L ++A+G+R S G C + + G VD + L D++L QWL T G I
Sbjct: 665 LRFVMANGDRLVSPGLCRNLALNIDGEAFSVDCFALDLCAVDIILGMQWLQTLGPI 720
>gi|218199564|gb|EEC81991.1| hypothetical protein OsI_25921 [Oryza sativa Indica Group]
Length = 426
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
IR+ G L ++ + VL+DS NF+ ++L KL V +A G + C
Sbjct: 231 IRLQGLLQNQEILVLVDSGSFSNFLSEQLVSKLQLPTQTSAPSQVTIADGGKI----LCN 286
Query: 52 QTLIKL----QGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
Q + L QG D +L YD++L +WL F
Sbjct: 287 QVVANLEWWCQGHTFSTDLKVLSLGSYDMILGMEWLEDF 325
>gi|195613064|gb|ACG28362.1| hypothetical protein [Zea mays]
Length = 428
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 4 VIGRLV--HKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGT----------CL 51
+ G LV + TVL D R TH+F+ + A K + ++ T C
Sbjct: 295 IFGTLVIHTTIATVLYDPRTTHSFISAQFATKYGIFKCPLRSRKTISTPEGKMLVNYICP 354
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
+ +K+ G+ D ++ G DV+L WL
Sbjct: 355 KVSVKINGIDFSADLLVIESMGKDVILGKNWL 386
>gi|38346257|emb|CAE02079.2| OSJNBa0074B10.7 [Oryza sativa Japonica Group]
Length = 1287
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 8 LVHKVV-TVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H ++ T+L DS +H+F+ R +L V +L ++ G +++ I+
Sbjct: 300 LIHSILATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAMYYSPAVPIE 359
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 360 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 389
>gi|357459751|ref|XP_003600156.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355489204|gb|AES70407.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 651
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 16 LIDSRRTHNFVRQELAVKLNVMV------------ASGERFSSLGTCLQTLIKLQGVPLI 63
+ID+ TH F+ E A KL ++V A G +SL CL+ I + G
Sbjct: 442 IIDTGATHCFIALESAYKLGLIVSDMKEEMVVETPAKGSVTTSL-VCLRCPISMFGRDFE 500
Query: 64 VDFYLLPFEGYDVVLDTQWL 83
VD LP G DV+ WL
Sbjct: 501 VDLVCLPLTGMDVIFGMNWL 520
>gi|18092337|gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
Length = 1470
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNV----------MVASGERFSSLGTCLQTLIKLQGVPLI 63
+VL DS +H+F+ K N+ + + G + +C IK+QG+
Sbjct: 376 SVLFDSGASHSFITASFVEKHNIPKYPLKRILHISSPGGDMKATHSCPHVNIKIQGIDFT 435
Query: 64 VDFYLLPFEGYDVVLDTQWLST 85
VD +L G DV+L WL +
Sbjct: 436 VDPVVLGSNGIDVILGCNWLKS 457
>gi|147855151|emb|CAN81740.1| hypothetical protein VITISV_009674 [Vitis vinifera]
Length = 771
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
++V ++ + V +LIDS THN + + L L V V++GE G
Sbjct: 99 MQVATKIGAQDVIILIDSESTHNLISERLTNLLRLLVVPMKTFIVRVSNGEHLRCQGQFE 158
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVL 78
+ + LQG + Y LP G DVVL
Sbjct: 159 EVQVDLQGTSFSLTLYSLPLIGLDVVL 185
>gi|62733144|gb|AAX95261.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62733825|gb|AAX95934.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550593|gb|ABA93390.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMV-ASGERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV A + SL I++QGVP +
Sbjct: 347 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSAPSNQALSLQRSPSVRIEIQGVPFL 406
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 407 ANLILLESKDLDVILGMDWLARYKGVID 434
>gi|20042994|gb|AAM08802.1|AC090486_12 putative retroelement [Oryza sativa Japonica Group]
gi|31431155|gb|AAP52977.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1594
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 631 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQVLSLRRSPSVRIE 690
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QGVP + + LL + DV+L WL+ +
Sbjct: 691 IQGVPFLANLILLESKDLDVILGMDWLARY 720
>gi|357510711|ref|XP_003625644.1| Serine carboxypeptidase [Medicago truncatula]
gi|355500659|gb|AES81862.1| Serine carboxypeptidase [Medicago truncatula]
Length = 712
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 16 LIDSRRTHNFVRQELAVKLNVMV------------ASGERFSSLGTCLQTLIKLQGVPLI 63
+ID+ TH F+ E A KL + + A G +SL CL+ I + G +
Sbjct: 434 IIDTGATHCFIAIECAYKLGLDISDMKGEMVVETPAKGSVTTSL-VCLRCPISMFGRDFV 492
Query: 64 VDFYLLPFEGYDVVLDTQWL 83
+D LP G DV+ WL
Sbjct: 493 IDLVCLPLTGMDVIFGMNWL 512
>gi|39545597|emb|CAE02841.3| OSJNBa0014F04.7 [Oryza sativa Japonica Group]
Length = 1625
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+FV A ++ ++MV++ + SL I+
Sbjct: 679 LVNSVPATVLFDSGATHSFVSMSFAGNDGMEVEDLRRHLMVSTPSNQALSLQRSPFVRIE 738
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 739 IQGVPFLANLILLESKDLDVILGMDWLA 766
>gi|284434534|gb|ADB85289.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 397
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPL 62
VT L+DS + FV +L K+ VM+A S C ++QG
Sbjct: 195 VTALVDSGSSATFVNPKLVTKIPCEIVNHTAIRVMIADRRLMGSDTLCQGCKYEIQGEKF 254
Query: 63 IVDFYLLPFEGYDVVLDTQWLST 85
D +LP GY V+ W+ T
Sbjct: 255 SSDMRVLPLRGYHVIFGADWICT 277
>gi|242117543|dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 607 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 666
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 667 SSLILLESKDLDVILGMDWLS 687
>gi|116317875|emb|CAH65904.1| H0207B04.5 [Oryza sativa Indica Group]
Length = 1481
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|116309001|emb|CAH66120.1| OSIGBa0146N20.5 [Oryza sativa Indica Group]
Length = 1481
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|116309189|emb|CAH66284.1| OSIGBa0161P06.1 [Oryza sativa Indica Group]
Length = 1665
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 568 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 627
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 628 SSLILLESKDLDVILGMDWLS 648
>gi|110288697|gb|ABB46940.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1244
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 667 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 726
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 727 SSLILLESKDLDVILGMDWLS 747
>gi|108708179|gb|ABF95974.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1643
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 636 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 695
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 696 SSLILLESKDLDVILGMDWLS 716
>gi|21671935|gb|AAM74297.1|AC083944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 974
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|3810595|gb|AAC69377.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1328
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 15 VLIDSRRTHNFVRQELAVKLN-----------VMVASGERFSSLGTCLQTLIKLQGVPLI 63
VL DS +H F+ E A + N V VA G+ + LG I++ G +
Sbjct: 315 VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIAGESMP 374
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF 86
D + P E YDV+L WL +
Sbjct: 375 ADLIISPVELYDVILGMDWLDHY 397
>gi|62733140|gb|AAX95257.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550597|gb|ABA93394.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1214
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 632 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 691
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 692 ANLILLESKDLDVILGMDWLARYKGVID 719
>gi|34015295|gb|AAQ56486.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2032
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 1009 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 1068
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 1069 ANLILLESKDLDVILGMDWLARYKGVID 1096
>gi|22711558|gb|AAM01161.2|AC113336_13 Putative retroelement [Oryza sativa Japonica Group]
gi|78707943|gb|ABB46918.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1661
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A+K + V S G + S C I+++ VP
Sbjct: 696 TVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFP 755
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 756 SSLILLESKDLDVILGMDWLS 776
>gi|29244670|gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108709213|gb|ABF97008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 555 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEIQGVPFL 614
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 615 ANLILLESKDLDVILGMDWLARYKGVID 642
>gi|77549283|gb|ABA92080.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1529
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 575 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIEIQGVPFL 634
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 635 ANLILLESKDLDVILGMDWLARYKGVID 662
>gi|15042811|gb|AAK82434.1|AC091247_1 putative polyprotein, 5'-partial [Oryza sativa Japonica Group]
Length = 799
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKLNVM----------VASGERFSSLGTCLQTLIKLQG 59
++V+ VL+DS +H+F+ L +L+++ VA+GE Q +QG
Sbjct: 133 NQVLIVLVDSGSSHSFINSALCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQG 192
Query: 60 VPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+LP GYD+VL WL+ +
Sbjct: 193 HQFSFPVRVLPMGGYDLVLGMDWLTQY 219
>gi|77555395|gb|ABA98191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1412
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ ++ SL I+
Sbjct: 368 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIE 427
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 428 IQGVPFLANLILLKSKDLDVILGMDWLA 455
>gi|77553655|gb|ABA96451.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1351
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 396 TVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQKSPF 454
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 455 LANLILLDSKDLDVILGMDWLTKFKGVID 483
>gi|22725909|gb|AAN04919.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31430212|gb|AAP52158.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1719
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P+
Sbjct: 657 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPV 715
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 716 LANLILLESKDLDVILGMDWLTKFKGVID 744
>gi|116317795|emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|116309024|emb|CAH66139.1| H0616A11.3 [Oryza sativa Indica Group]
Length = 1451
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|18425261|gb|AAL69439.1|AC098565_21 Putative polyprotein [Oryza sativa]
Length = 1181
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P+
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPV 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|18855070|gb|AAL79762.1|AC096687_26 putative polyprotein [Oryza sativa Japonica Group]
gi|108711868|gb|ABF99663.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1087
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKLNVM----------VASGERFSSLGTCLQTLIKLQG 59
++V+ VL+DS +H+F+ L +L+++ VA+GE Q +QG
Sbjct: 421 NQVLIVLVDSGSSHSFINSALCHRLHLLSEPIPPTSVRVANGEVLVCDAKISQFDWWVQG 480
Query: 60 VPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+LP GYD+VL WL+ +
Sbjct: 481 HQFSFPVRVLPMGGYDLVLGMDWLTQY 507
>gi|15217306|gb|AAK92650.1|AC079634_11 Putative retroelement [Oryza sativa Japonica Group]
gi|31431383|gb|AAP53171.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1109
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 14 TVLIDSRRTHNF-----------VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F VR+EL+ + V G +S+ I++Q P
Sbjct: 246 TVLFDSGATHSFISKKFVGMHGLVREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 304
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF 86
+ + LL + DV+L WL+ F
Sbjct: 305 LANLILLESKDLDVILGMDWLTKF 328
>gi|38346992|emb|CAD40278.2| OSJNBb0062H02.17 [Oryza sativa Japonica Group]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa Japonica Group]
Length = 1629
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCL 51
+R++G++ K + +L+DS + +F+ + +A V + VMVA G + L
Sbjct: 478 MRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQVMVAGGAKLHCCSEIL 537
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
+QG + +L YD++L WL
Sbjct: 538 NCEWTIQGHVFFTNLKVLELNNYDMILGMDWL 569
>gi|449462405|ref|XP_004148931.1| PREDICTED: uncharacterized protein LOC101213941 [Cucumis sativus]
Length = 902
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 17 IDSRRTHNF---VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEG 73
+ S+RT + +L + V + +G + G C + +KL+ + ++ DF +
Sbjct: 379 VTSKRTKKLKGHLSIDLGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGT 438
Query: 74 YDVVLDTQWLSTFGLIE 90
D+VL QWL + G ++
Sbjct: 439 VDLVLGMQWLDSTGTMK 455
>gi|20451036|gb|AAM22007.1|AC093178_2 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430824|gb|AAP52683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1229
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+FV R +L V +L ++ G ++ I+
Sbjct: 718 LVHSIPATILFDSGASHSFVSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+QG+P D LL + DV+L WL+ F ++
Sbjct: 778 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQVV 810
>gi|108862586|gb|ABG22001.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1751
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 647 LVNSVHATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 706
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QG+P + + LL + DV+L WL+ + G+I+
Sbjct: 707 IQGIPFLANLILLESKDLDVILGMDWLARYKGVID 741
>gi|78708144|gb|ABB47119.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1522
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 447 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 505
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 506 LANLILLESKDLDVILGMDWLTKFKGVID 534
>gi|77555408|gb|ABA98204.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1521
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|77555816|gb|ABA98612.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1775
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 718 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 776
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 777 LANLILLESKDLDVILGMDWLTKFKGVID 805
>gi|77555641|gb|ABA98437.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 714 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 772
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 773 LANLILLESKDLDVILGMDWLTKFKGVID 801
>gi|77554821|gb|ABA97617.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1243
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|77554637|gb|ABA97433.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1672
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 600 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 658
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 659 LANLILLESKDLDVILGMDWLTKFKGVID 687
>gi|77549254|gb|ABA92051.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVRMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|77552427|gb|ABA95224.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1570
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|62733086|gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1566
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 717 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 775
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 776 LANLILLESKDLDVILGMDWLTKFKGVID 804
>gi|15217244|gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa Japonica Group]
gi|19881702|gb|AAM01103.1|AC098682_7 Putative retroelement [Oryza sativa Japonica Group]
gi|31431123|gb|AAP52945.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|15217216|gb|AAK92560.1|AC051624_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431025|gb|AAP52863.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 603 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 661
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 662 LANLILLESKDLDVILGMDWLTKFKGVID 690
>gi|20042987|gb|AAM08795.1|AC090486_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431148|gb|AAP52970.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1785
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 674 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 732
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 733 LANLILLESKDLDVILGMDWLTKFKGVID 761
>gi|116309867|emb|CAH66904.1| H0823A09.5 [Oryza sativa Indica Group]
Length = 1716
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 674 TVLFDSGATHSFISTKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 732
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 733 LANLILLESKDLDVILGMDWLTKFKGVID 761
>gi|116310689|emb|CAH67488.1| H0306B06.3 [Oryza sativa Indica Group]
Length = 1510
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|116309026|emb|CAH66141.1| H0616A11.5 [Oryza sativa Indica Group]
Length = 1421
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVRMHWLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|116309023|emb|CAH66138.1| H0616A11.2 [Oryza sativa Indica Group]
Length = 1510
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 399 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 457
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 458 LANLILLESKDLDVILGMDWLTKFKGVID 486
>gi|108864175|gb|ABG22421.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1572
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 717 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 775
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 776 LANLILLESKDLDVILGMDWLTKFKGVID 804
>gi|53981934|gb|AAV25052.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|53981935|gb|AAV25053.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|53981941|gb|AAV25059.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982136|gb|AAV25232.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1777
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFLGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|53981942|gb|AAV25060.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53982137|gb|AAV25233.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1765
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|38344376|emb|CAD41428.2| OSJNBb0032E06.10 [Oryza sativa Japonica Group]
Length = 2120
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 650 TVLFDSGATHSFISKKFVGMHGFIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 708
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 709 LANLILLESKDLDVILGMDWLTKFKGVID 737
>gi|38346551|emb|CAE02128.2| OSJNBa0035M09.12 [Oryza sativa Japonica Group]
Length = 1435
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|14018099|gb|AAK52162.1|AC084831_16 putative polyprotein [Oryza sativa Japonica Group]
gi|108709291|gb|ABF97086.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1461
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHLLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|21672035|gb|AAM74397.1|AC119149_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 1512
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 364 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 422
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 423 LANLILLESKDLDVILGMDWLTKFKGVID 451
>gi|77554249|gb|ABA97045.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1474
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ ++MV++ + SL I++QGVP +
Sbjct: 377 TVLFDSGATHSFLSMSFAGNDGMEVEDLRRHLMVSTPSNQALSLQHSPSVRIEIQGVPFL 436
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 437 ANLILLESKDLDVILGMDWLA 457
>gi|449474333|ref|XP_004154142.1| PREDICTED: enzymatic polyprotein-like, partial [Cucumis sativus]
Length = 566
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 17 IDSRRTHNF---VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEG 73
+ S+RT + +L + V + +G + G C + +KL+ + ++ DF +
Sbjct: 186 VTSKRTKKLKGHLSIDLGTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGT 245
Query: 74 YDVVLDTQWLSTFGLIE 90
D+VL QWL + G ++
Sbjct: 246 VDLVLGMQWLDSTGTMK 262
>gi|57834137|emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa Japonica Group]
Length = 1528
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ G + SL I+++GVP +
Sbjct: 496 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPGNQALSLQRSPSVRIEIKGVPFL 555
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 556 ANLILLESKDLDVILGMDWLA 576
>gi|31431236|gb|AAP53044.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1094
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ ++ SL I+++GVP +
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEIKGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + +DV+L WL+
Sbjct: 436 ANLILLESKDFDVILGMDWLA 456
>gi|77554007|gb|ABA96803.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1500
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQMSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|53981183|gb|AAV24823.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1374
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 301 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 359
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 360 LANLILLDSKDLDVILGMDWLTKFKGVID 388
>gi|110289541|gb|AAP54937.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1477
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQE----------LAVKLNVMVASGERFSSLGTCL 51
IR+ G + + +LIDS +H+F+ ++ L L V +A G C
Sbjct: 424 IRLRGWIQGTELLMLIDSGSSHSFIDEKIGKSMSGVKLLTKPLKVQIADGGEL----VCS 479
Query: 52 QTLIK----LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
Q + QG DF L+P GYD++L WL +
Sbjct: 480 QVIPNCSWWTQGHNFSNDFKLIPLGGYDIILGMDWLEQY 518
>gi|297735014|emb|CBI17376.3| unnamed protein product [Vitis vinifera]
Length = 1567
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + E S +GT C +I L
Sbjct: 429 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 488
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 489 LNVDLRILDMTGYDVILGMDWLAVY 513
>gi|116309194|emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]
Length = 1433
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNSPGNQAFSTQYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|13129465|gb|AAK13123.1|AC080019_15 Similar to Transposon MAGGYgagandpolgenehomologues [Oryza sativa
Japonica Group]
Length = 2157
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 840 TVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 899
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 900 ANLILLESKDLDVILGMDWLA 920
>gi|110289020|gb|ABB47439.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 376 TVLFDSSATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 436 ANLILLESKDLDVILGMDWLA 456
>gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1715
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 611 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 670
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 671 IQGVPFLANLILLESKDLDVILGMDWLA 698
>gi|116308982|emb|CAH66104.1| OSIGBa0101K10.3 [Oryza sativa Indica Group]
Length = 1521
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMHGLMRKELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|110288626|gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1695
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 591 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 650
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 651 IQGVPFLANLILLESKDLDVILGMDWLA 678
>gi|110288769|gb|ABG65971.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 371 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 430
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 431 IQGVPFLANLILLESKDLDVILGMDWLA 458
>gi|108862626|gb|ABA98029.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1541
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 589 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 648
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 649 IQGVPFLANLILLESKDLDVILGMDWLA 676
>gi|20177640|gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1680
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 576 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 635
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 636 IQGVPFLANLILLESKDLDVILGMDWLA 663
>gi|31126663|gb|AAP44586.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709242|gb|ABF97037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1436
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 370 LVNSVPATVLFDSGATHSFLSMGFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 429
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QGVP + + LL + DV+L WL+ + G+I+
Sbjct: 430 IQGVPFLANLILLESKDLDVILGMDWLARYKGVID 464
>gi|77554705|gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 595
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + SS + I
Sbjct: 371 LVNSVPATVLFDSGATHSFLSMSFARNHGMEVEDLRRPLMVSTPSNQALSSQRSP-SVRI 429
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
++QGVP + + LL + DV+L WL+ + G+I+
Sbjct: 430 EIQGVPFLANLILLESKDLDVILGMDWLARYKGVID 465
>gi|110289018|gb|ABB47435.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1755
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q +P
Sbjct: 644 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRLPF 702
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 703 LANLILLESKDLDVILGMDWLTKFNGVID 731
>gi|54291803|gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I
Sbjct: 716 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPID 775
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+PL D LL + DV+L WL+ F
Sbjct: 776 IQGIPLPSDLILLDTKNLDVILGMNWLAQF 805
>gi|38568037|emb|CAD40411.3| OSJNBa0065J03.7 [Oryza sativa Japonica Group]
Length = 1414
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ----------ELAVKLNVMVASGERFSSLGTCL 51
IRV G + + +LIDS +H+F+ + L + V VASGE
Sbjct: 333 IRVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVTSLPQPVKVKVASGEVLICDKQLP 392
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
LQG +F LL GYD +L WL G++
Sbjct: 393 DYAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVM 430
>gi|18652528|gb|AAL77161.1|AC091732_12 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1731
Score = 38.5 bits (88), Expect = 0.57, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q +P
Sbjct: 620 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRLPF 678
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 679 LANLILLESKDLDVILGMDWLTKFNGVID 707
>gi|77551042|gb|ABA93839.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 852
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVR----------QELAVKLNVMVASGERFSSLGTCLQ 52
R+ G++ + V +L+DS + +F+ Q L L+V VA+GE L
Sbjct: 332 RLHGKIQGRDVLILVDSGSSTSFLSVAFADQLEGVQPLRRPLSVKVANGEMLRCLTELPN 391
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
T+ QG F ++ GYD +L WL+ ++
Sbjct: 392 TVWSAQGFGFCTTFKVITMGGYDAILGMDWLTQHSPMD 429
>gi|90186404|gb|ABD91504.1| putative polyprotein [Oryza sativa Indica Group]
Length = 932
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 301 TVLFDSGATHSFISKKFVGVHGLIREELSTPIRVHTP-GNSSTSVQFSPSITIEIQRSPF 359
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 360 LANLILLDSKDLDVILGMDWLTKFKGVID 388
>gi|90265093|emb|CAH67706.1| H0512B01.1 [Oryza sativa Indica Group]
Length = 1454
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSFGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|77554298|gb|ABA97094.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 676
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNF-----------VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TV+ DS TH+F VR+EL+ + V G +S+ I++Q P
Sbjct: 184 TVIFDSGATHSFISKKFVGMHGLVREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 242
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 243 LANLILLESKDLDVILGMDWLTKFKGVID 271
>gi|19881766|gb|AAM01167.1|AC113336_19 Putative retroelement [Oryza sativa Japonica Group]
gi|110288687|gb|ABB46920.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 892
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 707 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 766
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QG+P D LL + DV+L WL+ F G++E
Sbjct: 767 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVE 801
>gi|224132328|ref|XP_002321312.1| predicted protein [Populus trichocarpa]
gi|222862085|gb|EEE99627.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELA----------VKLNVMVASGERFSSLGTCL 51
IR+ G + + +LIDS THNF+ + +A + L V +A+G
Sbjct: 280 IRIRGNYHGRELVILIDSGSTHNFIDEHIAGELQISIERSLVLTVTIANGSTILCDSYTT 339
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLST 85
+ +Q +VD +L DVVL WL++
Sbjct: 340 EFKWFMQNYEFVVDLKILKLGRCDVVLGMDWLNS 373
>gi|218200076|gb|EEC82503.1| hypothetical protein OsI_26980 [Oryza sativa Indica Group]
Length = 471
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFV----RQELAVKLN------VMVASGERFSSLGTCL 51
IR+ + +KV+ +L+DS +H+F+ Q L ++L V VA+G+
Sbjct: 43 IRLRALVQNKVLLLLVDSGSSHSFLDYNFAQLLGLQLQPIAPFLVKVANGDCIPCQFVVP 102
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
Q QG D ++P G+D +L WL+ +G
Sbjct: 103 QFTWWFQGRTFTYDMRVVPLGGHDAILGMDWLAQWG 138
>gi|116309193|emb|CAH66288.1| OSIGBa0161P06.5 [Oryza sativa Indica Group]
Length = 1471
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + + G +S+ I++Q P
Sbjct: 360 TVLFDSGATHSFISKKFVGKHGLIREELSTPMRIHTP-GNSSTSVQFSPSITIEIQRSPF 418
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 419 LANLILLESKDLDVILGMDWLTKFKGVID 447
>gi|41469587|gb|AAS07330.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108710255|gb|ABF98050.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1294
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++L L V S + SS + I++QGVP
Sbjct: 335 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSSQRSP-SVRIEIQGVPF 393
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ + G+I+
Sbjct: 394 LANLILLESKDLDVILGMDWLARYKGVID 422
>gi|38347308|emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 1389 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKNYSPAVPIE 1448
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 1449 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 1478
>gi|77555470|gb|ABA98266.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 429 IQGVPFLANLILLKSKDLDVILGMDWLA 456
>gi|108862564|gb|ABA97616.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1423
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 700 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPTVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QG+P D LL + DV+L WL+ F GL++
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGLVD 794
>gi|38567947|emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa Japonica Group]
Length = 1779
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 675 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 734
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 735 IQGVPFLANLILLKSKDLDVILGMDWLA 762
>gi|62734186|gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77548986|gb|ABA91783.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 663 TVLFDSGATHSFISKKFVGMHGLIREELSTLMRVHTP-GNSSTSVQFSPSITIEIQRSPF 721
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 722 LANLILLESKDLDVILGMDWLTKFKGVID 750
>gi|77556423|gb|ABA99219.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2360
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLA 456
>gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431346|gb|AAP53141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 644 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 703
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 704 IQGVPFLANLILLESKDLDVILGMDWLA 731
>gi|22138474|gb|AAM93458.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430677|gb|AAP52558.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1406
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 302 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 361
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 362 IQGVPFLANLILLESKDLDVILGMDWLA 389
>gi|38344461|emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa Japonica Group]
Length = 1752
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 649 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 708
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 709 IQGVPFLANLILLESKDLDVILGMDWLA 736
>gi|116309029|emb|CAH66143.1| OSIGBa0114M03.1 [Oryza sativa Indica Group]
Length = 1571
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 562 LVNSVPATVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIE 621
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 622 IQGVPFLANLILLESKDLDVILGMDWLA 649
>gi|108862750|gb|ABA98741.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1678
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 600 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 659
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 660 IQGVPFLANLILLESKDLDVILGMDWLA 687
>gi|108862342|gb|ABA96234.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 303 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 362
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 363 IQGVPFLANLILLESKDLDVILGMDWLA 390
>gi|108708504|gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1822
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 718 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 778 IQGVPFLANLILLESKDLDVILGMDWLA 805
>gi|62733632|gb|AAX95749.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|110288789|gb|AAP52632.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1608
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 580 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 639
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 640 IQGVPFLANLILLESKDLDVILGMDWLA 667
>gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1678
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 574 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 633
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 634 IQGVPFLANLILLESKDLDVILGMDWLA 661
>gi|38344597|emb|CAD39969.2| OSJNBa0072D08.2 [Oryza sativa Japonica Group]
Length = 1712
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 608 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 667
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 668 IQGVPFLANLILLESKDLDVILGMDWLA 695
>gi|32489966|emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa Japonica Group]
Length = 1412
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 429 IQGVPFLANLILLESKDLDVILGMDWLA 456
>gi|77554975|gb|ABA97771.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2174
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 1070 LVNSVPATVLFDSGATHSFLSTSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 1129
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 1130 IQGVPFLANLILLKSKDLDVILGMDWLA 1157
>gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa Japonica Group]
Length = 1616
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 512 LVNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRRPLMVSTPSNQALSLQRSPSVKIE 571
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 572 IQGVPFLANLILLKSKDLDVILGMDWLA 599
>gi|449479939|ref|XP_004155753.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 426
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 29 ELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGL 88
E K V + G G C + +KL + ++ DF + DVVL QWL T G
Sbjct: 116 EEKTKFGVTIGDGTALEGKGVCKRVEVKLPELKIVADFLAIKLGRIDVVLGMQWLCTTGF 175
Query: 89 I 89
+
Sbjct: 176 M 176
>gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza sativa Japonica Group]
Length = 1374
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 14 TVLIDSRRTHNFVR------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFY 67
TVL DS TH+F+ ++L L V S + S L I++QGVP + +
Sbjct: 378 TVLFDSGATHSFLLNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRIEIQGVPFLANLI 436
Query: 68 LLPFEGYDVVLDTQWLS 84
LL + DV+L WL+
Sbjct: 437 LLESKDLDVILGMDWLA 453
>gi|90265088|emb|CAH67760.1| H0124E07.7 [Oryza sativa Indica Group]
Length = 1430
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 368 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIE 427
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 428 IQGVPFLANLILLESKDLDVILGMDWLA 455
>gi|38346698|emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa Japonica Group]
Length = 806
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 366 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIE 425
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 426 IQGVPFLANLILLESKDLDVILGMDWLA 453
>gi|77552307|gb|ABA95104.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1709
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 746 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIE 805
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 806 IQGVPFLANLILLESKDLDVILGMDWLA 833
>gi|116308918|emb|CAH66048.1| OSIGBa0131F24.2 [Oryza sativa Indica Group]
Length = 1437
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
+VL DS TH+F+ + A + V S G + SS C I+++ VP
Sbjct: 340 SVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVSSTQYCPSATIEIEEVPFP 399
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 400 SSLILLESKDLDVILGMDWLS 420
>gi|58532040|emb|CAE05093.3| OSJNBa0009K15.13 [Oryza sativa Japonica Group]
Length = 1480
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ ++V++ + SL I++QGVP +
Sbjct: 538 TVLFDSGATHSFLSMSFAGNHGMEVEDIRRPLLVSTPSNQALSLQRSPSVRIEIQGVPFL 597
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF 86
+ LL + DV+L WL+ +
Sbjct: 598 ANLILLESKDLDVILGMDWLARY 620
>gi|297608672|ref|NP_001061948.2| Os08g0451600 [Oryza sativa Japonica Group]
gi|215768264|dbj|BAH00493.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678494|dbj|BAF23862.2| Os08g0451600 [Oryza sativa Japonica Group]
Length = 707
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFV----RQELAVKLN------VMVASGERFSSLGTCL 51
IR+ + +KV+ +L+DS +H+F+ Q L ++L V VA+G+
Sbjct: 153 IRLRALVQNKVLLLLVDSGSSHSFLDYNFAQLLGLQLQPIAPSLVKVANGDCIHCQFMVP 212
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
Q QG D ++P G+D +L WL+ +G
Sbjct: 213 QFTWWFQGRTFTYDMRVVPLGGHDAILGMDWLAQWG 248
>gi|242117586|dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1475
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 378 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 437
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 438 ANLILLKSKDLDVILGMDWLA 458
>gi|62733754|gb|AAX95863.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1126
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMV---ASGERFSSLGTCLQ---TLI 55
+R+ G + ++ V +LIDS + +FV Q L L++ V A + + G LQ
Sbjct: 443 VRLQGLIQNQEVLILIDSGSSSSFVAQHLVDSLSLAVLETAPAQVVIADGGVLQCNKVAT 502
Query: 56 KL----QGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
K+ QG D +L GYDV+L WL F
Sbjct: 503 KVDWWCQGHSFTSDLKVLQLGGYDVILGMDWLEHF 537
>gi|242117542|dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1727
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + SS C I+++ V
Sbjct: 630 TVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVSSTRYCPSVTIEIEEVLFP 689
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 690 SSLILLESKDLDVILGMDWLS 710
>gi|218199463|gb|EEC81890.1| hypothetical protein OsI_25707 [Oryza sativa Indica Group]
Length = 839
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 34 LNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
L +VA+G+R S G C + + VD + L D++L QWL T G I
Sbjct: 627 LRFVVANGDRLVSPGLCRNLTLNIDDEAFSVDCFALDLCAVDIILGMQWLQTLGPI 682
>gi|53981359|gb|AAV24913.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1850
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+FV ++EL+ + V G +S+ LI++Q P
Sbjct: 642 TVLFDSGATHSFVSKKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 700
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 701 LANLILLESKDLDVILGMDWLTKFKGVID 729
>gi|77555389|gb|ABA98185.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1699
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 602 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 661
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 662 ANLILLESKDLDVILGMDWLA 682
>gi|77551562|gb|ABA94359.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1505
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 679 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 738
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 739 ANLILLESKDLDVILGMDWLA 759
>gi|116308971|emb|CAH66095.1| OSIGBa0114I04.2 [Oryza sativa Indica Group]
Length = 1361
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 436 ANLILLESKDLDVILGMDWLA 456
>gi|110288865|gb|ABB47143.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1020
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 594 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 653
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 654 ANLILLESKDLDVILGMDWLA 674
>gi|54287530|gb|AAV31274.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287634|gb|AAV31378.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1400
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 436 ANLILLESKDLDVILGMDWLA 456
>gi|22725934|gb|AAN04944.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1078
Score = 37.7 bits (86), Expect = 0.83, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 594 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 653
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 654 ANLILLESKDLDVILGMDWLA 674
>gi|38346588|emb|CAE04652.2| OSJNBa0061G20.8 [Oryza sativa Japonica Group]
Length = 1598
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL +S TH+F+ A ++ +MV++ + SL I+
Sbjct: 494 LVNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 553
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QGVP + + LL + DV+L WL+ + G+I+
Sbjct: 554 IQGVPFLANLILLESKDLDVILGMDWLARYKGMID 588
>gi|116309635|emb|CAH66687.1| OSIGBa0097A15.2 [Oryza sativa Indica Group]
Length = 1560
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL +S TH+F+ A ++ +MV++ + SL I+
Sbjct: 494 LVNSVPATVLFNSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 553
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QGVP + + LL + DV+L WL+ + G+I+
Sbjct: 554 IQGVPFLANLILLESKDLDVILGMDWLARYKGMID 588
>gi|449466919|ref|XP_004151173.1| PREDICTED: uncharacterized protein LOC101214111 [Cucumis sativus]
Length = 503
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 26 VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLST 85
V+ + + V + R G C + ++LQ + +I DF + D+VL QWL T
Sbjct: 267 VKGKRGTQFVVTIGDDTRCKGRGVCKRVELRLQELTIIADFLAVELGNVDLVLGMQWLDT 326
Query: 86 FGLIE 90
G ++
Sbjct: 327 IGTMK 331
>gi|38347301|emb|CAE02296.2| OSJNBa0042F21.3 [Oryza sativa Japonica Group]
gi|38347573|emb|CAE05006.2| OSJNBb0093G06.14 [Oryza sativa Japonica Group]
Length = 1529
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 646 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLIITTPGGVMTAKYYSPAVPIE 705
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 706 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 735
>gi|147769429|emb|CAN61575.1| hypothetical protein VITISV_014037 [Vitis vinifera]
Length = 503
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF-------SSLGT---- 49
MI V VH VL D+ TH+F+ A N ER S +GT
Sbjct: 331 MILVYSTWVH----VLFDTGATHSFISISCA---NASGLKSERVENLLLIESPMGTNSKV 383
Query: 50 ---CLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
C +I L + L VD +L GYDV+L WL+ + I
Sbjct: 384 DRICKGCVITLVDIALNVDLRILDMTGYDVILGMDWLAVYRAI 426
>gi|116308831|emb|CAH65969.1| H0820C10.2 [Oryza sativa Indica Group]
Length = 1685
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 588 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIEIQGVPFL 647
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 648 ANLILLKSKDLDVILGMDWLA 668
>gi|51854302|gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1638
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 580 TILFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 638
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 639 LANLILLGSKDLDVILGMDWLTKFKGVID 667
>gi|62733790|gb|AAX95899.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549663|gb|ABA92460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1686
Score = 37.7 bits (86), Expect = 0.91, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 620 LVNSVPATVLFDSGGTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 679
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 680 IQGVPFLANLILLESKDLDVILGMDWLA 707
>gi|77551535|gb|ABA94332.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1668
Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVAS--GERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N M+ + G ++ I+
Sbjct: 665 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPMLITTPGGVMTAKFYSPAVPIE 724
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 725 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 754
>gi|57834100|emb|CAE04765.3| OSJNBa0079C19.6 [Oryza sativa Japonica Group]
Length = 1998
Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKLN----VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ ++ G ++ I+
Sbjct: 656 LIHSIPATILFDSGASHSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIE 715
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 716 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 745
>gi|32487330|emb|CAE05905.1| OSJNBa0061C08.12 [Oryza sativa Japonica Group]
Length = 1971
Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKLN----VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ ++ G ++ I+
Sbjct: 629 LIHSIPATILFDSGASHSFISVPFMGRNQLGVERIRNPLLITTPGGVMTAKYNSPAVPIE 688
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 689 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 718
>gi|13129458|gb|AAK13116.1|AC080019_8 polyprotein [Oryza sativa Japonica Group]
Length = 2162
Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q +P
Sbjct: 1004 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRLPF 1062
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 1063 LANLILLESKYLDVILGMDWLTKFKGVID 1091
>gi|77554997|gb|ABA97793.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1435
Score = 37.7 bits (86), Expect = 0.93, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 402 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTTKYYSPAVPIE 461
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 462 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 491
>gi|78708471|gb|ABB47446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1705
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q +P
Sbjct: 670 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRLPF 728
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 729 LANLILLESKYLDVILGMDWLTKFKGVID 757
>gi|57834025|emb|CAI44621.1| B1168G10.5 [Oryza sativa Japonica Group]
Length = 1456
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS +H+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 616 TVLFDSGASHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 675
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 676 ANLILLESKDLDVILGMDWLARYKGVID 703
>gi|39546223|emb|CAE04472.3| OSJNBa0029L02.13 [Oryza sativa Japonica Group]
Length = 1158
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G + + LI++Q P
Sbjct: 78 TVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTP-GNSSTLVSFSPSVLIEIQRSPF 136
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 137 LANLILLESKDLDVILGMDWLTKFKGVID 165
>gi|62733376|gb|AAX95493.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734610|gb|AAX96719.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550245|gb|ABA93042.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1497
Score = 37.7 bits (86), Expect = 0.96, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 611 LIHSIPATILFDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 670
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P +D LL DV+L WL+ F
Sbjct: 671 IQGIPFPLDLILLDTNNLDVILGMNWLAQF 700
>gi|21672037|gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Japonica Group]
gi|31431043|gb|AAP52881.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 717 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPTVPIE 776
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 777 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 806
>gi|78708041|gb|ABB47016.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 745 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 804
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 805 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 834
>gi|78708125|gb|ABB47100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1821
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 717 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 776
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 777 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 806
>gi|78708035|gb|ABB47010.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 692 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 751
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 752 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 781
>gi|77555127|gb|ABA97923.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1758
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 688 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 747
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 748 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 777
>gi|77555686|gb|ABA98482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 699 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 758
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 759 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 788
>gi|77556493|gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 701 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 760
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 761 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 790
>gi|77555643|gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 685 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 744
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 745 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 774
>gi|77555397|gb|ABA98193.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1759
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 687 LVHSIPATILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 746
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 747 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 776
>gi|77556441|gb|ABA99237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1790
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 686 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 745
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 746 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 775
>gi|77555576|gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 696 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 755
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 756 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 785
>gi|77552428|gb|ABA95225.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 691 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 750
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 751 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 780
>gi|62732761|gb|AAX94880.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549451|gb|ABA92248.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1849
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 745 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 804
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 805 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 834
>gi|62733085|gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549495|gb|ABA92292.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1795
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 691 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 750
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 751 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 780
>gi|22539074|gb|AAN01246.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431332|gb|AAP53127.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 690 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 749
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 750 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 779
>gi|22857594|gb|AAN09868.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1802
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 698 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 757
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 758 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 787
>gi|13992680|gb|AAK51574.1|AC022352_10 Putative retroelement [Oryza sativa Japonica Group]
gi|31431004|gb|AAP52842.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1810
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 706 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 765
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 766 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 795
>gi|22725933|gb|AAN04943.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431094|gb|AAP52925.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1803
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 699 LVHSIPATILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 758
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 759 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 788
>gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431096|gb|AAP52927.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1825
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 721 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 780
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 781 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 810
>gi|284434667|gb|ADB85376.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 839
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS +H+FV Q A K + V++ G S+ +C Q + ++GV +
Sbjct: 255 TVLFDSGASHSFVSQISAAKHPLKVSTLKTALLVPSPGSELSTNQSCPQVKMIIEGVEFL 314
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ ++ + DV+L W +
Sbjct: 315 ANLVIINTKSLDVILGMDWFT 335
>gi|116311097|emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indica Group]
Length = 1826
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 722 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 781
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 782 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 811
>gi|116310126|emb|CAH67143.1| OSIGBa0130P02.7 [Oryza sativa Indica Group]
Length = 1741
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +M+++ + SL I+
Sbjct: 637 LVNSVPATVLFDSGATHSFLSMSFAGNHEMEVEDLRRPLMISTPSNQALSLQRSPSVRIE 696
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 697 IQGVPFLANLILLESKDLDVILGMDWLA 724
>gi|110289019|gb|ABB47436.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1504
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 400 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 459
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DVVL WL+ F
Sbjct: 460 IQGIPFPSDLILLDTKNLDVVLGMNWLAQF 489
>gi|110288767|gb|AAP52585.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1797
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 693 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 752
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 753 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 782
>gi|108862685|gb|ABA98546.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 722 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 781
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 782 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 811
>gi|108708189|gb|ABF95984.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 700 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 789
>gi|70720828|emb|CAI44646.2| OSJNBa0057M08.21 [Oryza sativa Japonica Group]
Length = 1202
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 599 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 658
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 659 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 688
>gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza sativa Japonica Group]
gi|55168194|gb|AAV44060.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1772
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 675 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 734
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 735 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 764
>gi|54287622|gb|AAV31366.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1826
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 745 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 804
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 805 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 834
>gi|54287528|gb|AAV31272.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287632|gb|AAV31376.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1784
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 680 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 739
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 740 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 769
>gi|54287627|gb|AAV31371.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 716 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 775
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 776 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 805
>gi|53981932|gb|AAV25050.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1804
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 700 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 789
>gi|52353726|gb|AAU44292.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1816
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 712 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 771
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 772 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 801
>gi|50300512|gb|AAT73655.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1747
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 666 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 725
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 726 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 755
>gi|58532066|emb|CAI44654.1| OSJNBa0004L19.17 [Oryza sativa Japonica Group]
Length = 1370
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 707 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 766
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 767 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 796
>gi|38347259|emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 681 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 740
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 741 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 770
>gi|57834136|emb|CAE05577.3| OSJNBa0032N05.5 [Oryza sativa Japonica Group]
Length = 1790
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 686 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 745
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 746 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 775
>gi|58531955|emb|CAE03064.2| OSJNBa0089E12.2 [Oryza sativa Japonica Group]
Length = 1764
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 660 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 719
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 720 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 749
>gi|13992691|gb|AAK51585.1|AC022352_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1862
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 758 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 817
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 818 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 847
>gi|19881536|gb|AAM00937.1|AC021892_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1052
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 699 LVHSIPATILFDSGASHSFISVSFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 758
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 759 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 788
>gi|58532097|emb|CAD40058.3| OSJNBa0085C10.10 [Oryza sativa Japonica Group]
Length = 1785
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 681 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 740
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 741 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 770
>gi|21743213|emb|CAD40068.1| OSJNBa0085C10.21 [Oryza sativa Japonica Group]
Length = 1825
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 721 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 780
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 781 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 810
>gi|11994678|dbj|BAB02916.1| unnamed protein product [Arabidopsis thaliana]
Length = 546
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQG 59
HKVV V+IDS T+NF+ ELA+ L +V++ + ++GTC + +Q
Sbjct: 236 HKVV-VVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCFGINLLVQE 294
Query: 60 VPLIVDFYLLPFEGYDV----------VLDTQWL 83
V + +F LL DV L+ QWL
Sbjct: 295 VEINENFLLLDLTKTDVDVILGYGGSQNLERQWL 328
>gi|240255473|ref|NP_189700.4| aspartyl protease family protein [Arabidopsis thaliana]
gi|332644137|gb|AEE77658.1| aspartyl protease family protein [Arabidopsis thaliana]
Length = 603
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 10 HKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQG 59
HKVV V+IDS T+NF+ ELA+ L +V++ + ++GTC + +Q
Sbjct: 293 HKVV-VVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCFGINLLVQE 351
Query: 60 VPLIVDFYLLPFEGYDV----------VLDTQWL 83
V + +F LL DV L+ QWL
Sbjct: 352 VEINENFLLLDLTKTDVDVILGYGGSQNLERQWL 385
>gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1729
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 728 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIE 787
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 788 IQGVPFLANLILLESKDLDVILGMDWLA 815
>gi|110288617|gb|AAP52162.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1730
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 728 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIE 787
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 788 IQGVPFLANLILLESKDLDVILGMDWLA 815
>gi|20177617|gb|AAM14672.1|AC097446_1 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 341 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPYVRIE 400
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + DV+L WL+
Sbjct: 401 IQGVPFLANLILLESKDLDVILGMDWLA 428
>gi|77554734|gb|ABA97530.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 567
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 310 TVLFDSGATHSFISKKFAGVHGLRKEELSTPMRVHTP-GNSSTSVSYSPSVLIEIQRSPF 368
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 369 LANLILLESKDLDVILGMDWLTKFKGVID 397
>gi|38345526|emb|CAD41296.2| OSJNBa0020J04.1 [Oryza sativa Japonica Group]
Length = 1763
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 749 LIHSIPTTILFDSGASHSFISVPFVGRNQLGVERLRNSLLITTPRGVMTAKYYSPAVPIE 808
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 809 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 838
>gi|297604112|ref|NP_001055003.2| Os05g0241900 [Oryza sativa Japonica Group]
gi|255676164|dbj|BAF16917.2| Os05g0241900 [Oryza sativa Japonica Group]
Length = 578
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
+I++ GR L+DS T F+ Q+ A++ V+VA G +
Sbjct: 373 LIKINGR----TAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMV 428
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
++QG F LLP +GYD++L W+ + I
Sbjct: 429 PDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPI 467
>gi|53981172|gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1475
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTC 50
+I++ GR L+DS T F+ Q+ A++ V+VA G +
Sbjct: 373 LIKINGR----TAVGLVDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMV 428
Query: 51 LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
++QG F LLP +GYD++L W+ + I
Sbjct: 429 PDISYEIQGECFTNQFKLLPLKGYDIILGADWIYNYSPI 467
>gi|19881742|gb|AAM01143.1|AC108884_25 Putative retroelement [Oryza sativa Japonica Group]
gi|21263216|gb|AAM44893.1|AC122144_16 Putative retroelement [Oryza sativa Japonica Group]
gi|31431896|gb|AAP53608.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1245
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH F+ ++EL+ + V A G +S+ LI++Q P
Sbjct: 215 TVLFDSGATHLFISKKFVGMHGLRKEELSTPMRVH-APGNSSTSVSFSPSVLIEIQRSPF 273
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 274 LANLILLKSKDLDVILGMDWLTQFKGVID 302
>gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVAS--GERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V+ N ++ + G ++ I+
Sbjct: 716 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIE 775
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 776 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 805
>gi|110288765|gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1502
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVAS--GERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V+ N ++ + G ++ I+
Sbjct: 398 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGVMTAKYYSPAVPIE 457
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 458 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 487
>gi|77551642|gb|ABA94439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1267
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|62734341|gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549773|gb|ABA92570.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1723
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 612 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 670
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 671 LANLILLESKDLDVILGMDWLTKFKGVID 699
>gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430814|gb|AAP52680.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1796
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 685 TVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 743
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 744 LANLILLESKDLDVILGMDWLTKFKGVID 772
>gi|15217199|gb|AAK92543.1|AC051624_1 Putative retroelement [Oryza sativa Japonica Group]
gi|31431042|gb|AAP52880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|116310873|emb|CAH67814.1| OSIGBa0138H21-OSIGBa0138E01.5 [Oryza sativa Indica Group]
Length = 1777
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|78708062|gb|ABB47037.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1347
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 16 LIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIVD 65
LIDS H F+ Q+ A + LNV VA+G++ + G +++ G D
Sbjct: 276 LIDSGLMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAGEEFATD 335
Query: 66 FYLLPFEGYDV 76
Y+L GYD+
Sbjct: 336 VYVLTLGGYDL 346
>gi|77556045|gb|ABA98841.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1470
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 391 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 450
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QGVP + LL + DV+L WL+ + G+I+
Sbjct: 451 IQGVPFRANLILLESKDLDVILGMDWLARYKGVID 485
>gi|77551772|gb|ABA94569.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1777
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|38346261|emb|CAE02083.2| OSJNBa0074B10.11 [Oryza sativa Japonica Group]
Length = 1243
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 116 TVLFDSGATHSFISKKFVGMHGLIREELSTPMWVHTP-GNSSTSVQFSPSITIEIQRSPF 174
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 175 LANLILLESKDLDVILGMDWLTKFKGVID 203
>gi|38346260|emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group]
Length = 720
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QG+P +
Sbjct: 325 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGIPFL 384
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 385 ANLILLESKDLDVILGMDWLA 405
>gi|21672038|gb|AAM74400.1|AC119149_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1300
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 666 TVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 724
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 725 LANLILLESKDLDVILGMDWLTKFKGVID 753
>gi|54291836|gb|AAV32204.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1142
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 184 TVLFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 242
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 243 LANLILLESKDLDVILGMDWLTKFKGVID 271
>gi|77555076|gb|ABA97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 923
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++L L V S + SS + I++QGVP
Sbjct: 195 TVLFDSGATHSFLSMSFAGNHGMEIEDLRHPLMVSTLSNQALSSQRSP-SVRIEIQGVPF 253
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ + G+I+
Sbjct: 254 LANLILLESKHLDVILGMDWLARYKGVID 282
>gi|38344636|emb|CAE05069.2| OSJNBa0094P09.8 [Oryza sativa Japonica Group]
Length = 954
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 8 LVHKV-VTVLIDSRRTHNFV---------------RQELAVKLNVMVASGERFSSLGTCL 51
LVH + T+L DS +H+F+ R L + V + E +S
Sbjct: 684 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAEYYSP----- 738
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
I++QG+P D LL + DV+L WL+ F
Sbjct: 739 AVPIEIQGIPFPSDLILLNTKNLDVILGMNWLAQF 773
>gi|50872410|gb|AAT85010.1| polyprotein [Oryza sativa Japonica Group]
gi|108708868|gb|ABF96663.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1760
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 23 HNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQW 82
H F+R+EL+ + V G +S+ I++Q P + + LL + DV+L W
Sbjct: 669 HGFIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDW 727
Query: 83 LSTF-GLIE 90
L+ F G+I+
Sbjct: 728 LTKFRGVID 736
>gi|15212099|emb|CAC51363.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 13 VTVLIDSRRTHNFV------RQELAVK---LNVMVASGERFSSLGT-CLQTLIKLQGVPL 62
+T L DS TH+F+ R +L+V +++V++ ++ ++ + CL + +Q L
Sbjct: 157 LTALFDSGATHSFIAMDCVNRLKLSVSALPFDLVVSTPDKTLTVNSACLHCRMTIQNRDL 216
Query: 63 IVDFYLLPFEGYDVVLDTQWLS 84
+V+ LP + +V+L W+S
Sbjct: 217 LVNLICLPLQSLEVILGMDWMS 238
>gi|62733379|gb|AAX95496.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734607|gb|AAX96716.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550242|gb|ABA93039.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 592
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 245 TVLFDSGATHSFISKKFVGMYGLRKKELSTPMKVHTP-GNSSTSVSYSPSVLIEIQRSPF 303
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 304 LANLILLESKDLDVILGMDWLTKFKGVID 332
>gi|77553962|gb|ABA96758.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 8 LVHKV-VTVLIDSRRTHNFV---------------RQELAVKLNVMVASGERFSSLGTCL 51
L+H + T+L DS +H+F+ R L + V + + +SS
Sbjct: 682 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSS----- 736
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
I++QG+P D LL + DV+L WL+ F
Sbjct: 737 AVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQF 771
>gi|116309424|emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
Length = 1602
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
I++ G + + +L+DS TH+F+ E++++L V +A G
Sbjct: 422 IKLRGWIQDMELLMLVDSGSTHSFIDSEVSLRLPGVHKLQTPLTVRIADGGTMKCTHEIS 481
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG F +LP YD++L WL F
Sbjct: 482 SCNWWMQGNQFCNSFRVLPLGNYDIILGMDWLELF 516
>gi|108710148|gb|ABF97943.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R++L+ + V G +S+ I++Q P
Sbjct: 659 TVLFDSGATHSFISKQFVGIHGLIREKLSTPMRVHTP-GNSSTSVQFSPSVTIEIQRSPF 717
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 718 LANLILLESKDLDVILGMDWLTKFKGVID 746
>gi|29244623|gb|AAO73216.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|31712104|gb|AAP68408.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1185
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R++L+ + V G +S+ I++Q P
Sbjct: 659 TVLFDSGATHSFISKQFVGIHGLIREKLSTPMRVHTP-GNSSTSVQFSPSVTIEIQRSPF 717
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 718 LANLILLESKDLDVILGMDWLTKFKGVID 746
>gi|242117488|dbj|BAH79971.1| hypothetical protein [Oryza sativa Indica Group]
Length = 1477
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 380 TVLFDSGATHSFLSLSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 439
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 440 ANLILLESKDLDVILGMDWLT 460
>gi|50878387|gb|AAT85162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1152
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 723 LVHPIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 782
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 783 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 812
>gi|38347567|emb|CAE05000.2| OSJNBb0093G06.8 [Oryza sativa Japonica Group]
Length = 1770
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 666 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 725
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 726 IQGIPFSSDLILLDTKNLDVILGMNWLAQF 755
>gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza sativa Japonica Group]
Length = 1473
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ ++ SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQTLSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLA 456
>gi|77555016|gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1702
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 605 TVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 664
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 665 SSLILLESKDLDVILGMDWLS 685
>gi|55168106|gb|AAV43974.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1568
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 545 TVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 604
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 605 SSLILLECKDLDVILGMDWLS 625
>gi|38346259|emb|CAE02081.2| OSJNBa0074B10.9 [Oryza sativa Japonica Group]
Length = 1659
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 578 TVLFDSGATHSFLSKSFASNHGMEVVSLGRSLLVNTPGNQVFSTQYCPSATIEIEEVPFP 637
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 638 SSLILLESKDLDVILGMDWLS 658
>gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza sativa Japonica Group]
Length = 1447
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 380 TVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 439
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 440 SSLILLESKDLDVILGMDWLS 460
>gi|20177638|gb|AAM14693.1|AC097446_22 Putative polyprotein [Oryza sativa Japonica Group]
gi|110288622|gb|ABB46770.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1630
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 609 TVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVPFP 668
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 669 SSLILLESKDLDVILGMDWLS 689
>gi|21742535|emb|CAD40160.1| OSJNBb0069N01.2 [Oryza sativa Japonica Group]
gi|38344505|emb|CAE05184.2| OSJNBa0013A04.21 [Oryza sativa Japonica Group]
Length = 1717
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 647 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 706
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QG+P D LL + DV+L WL+ F G+++
Sbjct: 707 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGIVD 741
>gi|38344419|emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group]
Length = 1809
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 718 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 778 IQGIPFPSDLILLDTKSLDVILGMNWLAQF 807
>gi|108711739|gb|ABF99534.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 756 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIE 815
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 816 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 845
>gi|40786567|gb|AAR89842.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 756 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIE 815
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 816 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 845
>gi|34015354|gb|AAQ56543.1| putative gag-protein [Oryza sativa Japonica Group]
Length = 835
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKLN----VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ ++ G ++ I+
Sbjct: 650 LIHSIPATILFDSGASHSFIYVPFVGRNQLGVERIRNPLLITTPGGVMTAKYYSPTVPIE 709
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 710 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 739
>gi|77556709|gb|ABA99505.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1307
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + S+ I++QGVP +
Sbjct: 351 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSMQRSPSVRIEIQGVPFL 410
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 411 ANLILLESKDLDVILGMDWLA 431
>gi|288819264|gb|ADC55379.1| gag-pol polyprotein [Oryza brachyantha]
Length = 1393
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ R++L + V FS L + + I++QG P
Sbjct: 403 TILFDSGATHSFISRKFVGMLGLKREKLRDPMRVNTPGHSMFSDLYSPV-VPIEIQGTPF 461
Query: 63 IVDFYLLPFEGYDVVLDTQWLS 84
+ + LL + DV+L WL+
Sbjct: 462 LANLILLESKDLDVILGMDWLT 483
>gi|116308973|emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa Indica Group]
Length = 1455
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 386 TVLFDSGATHSFMSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 445
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 446 SSLILLESKDLDVILGMDWLS 466
>gi|57863932|gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 685 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 744
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 745 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 774
>gi|77554650|gb|ABA97446.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 743 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 802
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 803 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 832
>gi|77554995|gb|ABA97791.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1791
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 728 LIHSIPATILFDSGASHSFISMPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 787
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 788 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 817
>gi|77555063|gb|ABA97859.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1806
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 717 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 776
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 777 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 806
>gi|77554522|gb|ABA97318.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1398
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 318 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 377
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 378 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 407
>gi|77554515|gb|ABA97311.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 398 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 457
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 458 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 487
>gi|62734325|gb|AAX96434.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550057|gb|ABA92854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1409
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 404 LIHSIPATILFDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 463
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 464 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 493
>gi|62734517|gb|AAX96626.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550171|gb|ABA92968.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1045
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V SG + SS C I+++ +P
Sbjct: 269 TVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTSGNQVSSTQYCPSITIEIEEIPFP 328
Query: 64 VDFYLLPFEGYDVVLDTQWL 83
LL + DV+L WL
Sbjct: 329 STLILLESKDLDVILGMDWL 348
>gi|20043037|gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Japonica Group]
Length = 1728
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 701 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 760
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 761 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 790
>gi|18425251|gb|AAL69429.1|AC098565_11 Putative polyprotein [Oryza sativa]
gi|31430202|gb|AAP52148.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1788
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 718 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 778 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 807
>gi|51091547|dbj|BAD36284.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1620
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 523 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 582
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 583 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 612
>gi|38344459|emb|CAE04930.2| OSJNBa0017P10.7 [Oryza sativa Japonica Group]
gi|38345444|emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa Japonica Group]
Length = 1469
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 365 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 424
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 425 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 454
>gi|38347461|emb|CAD40088.2| OSJNBb0012A12.14 [Oryza sativa Japonica Group]
Length = 1075
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 434 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 493
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 494 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 523
>gi|38344564|emb|CAD39906.2| OSJNBa0065B15.10 [Oryza sativa Japonica Group]
Length = 1500
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 509 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 568
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 569 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 598
>gi|242117532|dbj|BAH80015.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1480
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 376 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 435
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 436 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 465
>gi|110288682|gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1707
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 680 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 739
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 740 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 769
>gi|110288855|gb|ABB47096.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 987
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 666 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 725
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 726 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 755
>gi|108864166|gb|ABA92236.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 718 LIHSIPATILFDSGASHSFISVTFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 778 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 807
>gi|108708192|gb|ABF95987.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1273
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 682 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 741
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 742 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 771
>gi|108708196|gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 644 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 703
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 704 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 733
>gi|90265089|emb|CAH67761.1| H0124E07.8 [Oryza sativa Indica Group]
Length = 1427
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 460 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 519
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 520 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 549
>gi|55168124|gb|AAV43991.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1499
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 416 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 475
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 476 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 505
>gi|54287545|gb|AAV31289.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1721
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 651 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 710
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 711 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 740
>gi|38346850|emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa Japonica Group]
Length = 1461
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 357 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 416
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 417 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 446
>gi|38568042|emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]
Length = 1599
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 651 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 710
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 711 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 740
>gi|58532064|emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa Japonica Group]
Length = 1821
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 717 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 776
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 777 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 806
>gi|32489197|emb|CAE04382.1| OSJNBa0027G07.24 [Oryza sativa Japonica Group]
gi|38347091|emb|CAE02563.2| OSJNBa0006M15.6 [Oryza sativa Japonica Group]
Length = 1635
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 663 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 722
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 723 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 752
>gi|32487701|emb|CAE05378.1| OSJNBa0022F16.2 [Oryza sativa Japonica Group]
gi|38346701|emb|CAE02186.2| OSJNBa0080E14.17 [Oryza sativa Japonica Group]
Length = 1494
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 678 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 737
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 738 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 767
>gi|13992687|gb|AAK51581.1|AC022352_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 959
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 648 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 707
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 708 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 737
>gi|14018097|gb|AAK52160.1|AC084831_14 putative polyprotein [Oryza sativa Japonica Group]
gi|108709292|gb|ABF97087.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1475
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 401 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 460
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 461 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 490
>gi|20143556|gb|AAM12313.1|AC091680_14 putative polyprotein [Oryza sativa Japonica Group]
Length = 1453
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 382 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIE 441
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 442 IQGIPFPSDLILLDTKNLDVILGMNWLAEF 471
>gi|110289465|gb|ABG66211.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1666
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 577 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIE 636
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 637 IQGIPFPSDLILLDTKNLDVILGMNWLAEF 666
>gi|38567683|emb|CAE75973.1| B1160F02.4 [Oryza sativa Japonica Group]
Length = 1618
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DSR +H+F+ R +L V +L ++ G ++ I+
Sbjct: 698 LIHSIPATILFDSRASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 757
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+Q +P D LL + DV+L WL+ F
Sbjct: 758 IQRIPFPSDLILLDTKNLDVILGMNWLAQF 787
>gi|19881623|gb|AAM01024.1|AC090488_24 Putative retroelement [Oryza sativa Japonica Group]
Length = 954
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R++G + K V +L+DS T +F+ ++A L V VA+G S+ TCL
Sbjct: 412 MRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPPVQVKVANG----SILTCL 467
Query: 52 QTLIK----LQGVPLIVDFYLLPFEGYDVVLDTQWL 83
++ + QG D +L YD++L WL
Sbjct: 468 TSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWL 503
>gi|108709317|gb|ABF97112.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 566
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 266 TVLFDSGATHSFISKKFIGMHGLIREELSTPMRVHTL-GNSSTSVQFSPSITIEIQRSPF 324
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + L + DV+L WL+ F G+I+
Sbjct: 325 LANLILFESKDLDVILGMDWLTKFKGVID 353
>gi|147839856|emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
Length = 1387
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + E S +GT C +I L
Sbjct: 369 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLANRA 428
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 429 LNVDLRILDMTGYDVILGMDWLAVY 453
>gi|108862432|gb|ABA97314.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1219
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R++G + K V +L+DS T +F+ ++A L V VA+G + L + L
Sbjct: 398 MRMLGYVQGKEVLILVDSGSTTSFITSKIAQTLQGVVTLEPPVQVKVANGSILTCLSSVL 457
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
+ QG D +L YD++L WL
Sbjct: 458 RCEWMTQGWVFYTDLKVLNLGSYDIILGMDWL 489
>gi|108863002|gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1595
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL D TH+F+ A ++ +MV++ + SL I+
Sbjct: 593 LVNSVPATVLFDFGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALSLQRSPSVRIE 652
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+QGVP + + LL + DV+L WL+ + G+I+
Sbjct: 653 IQGVPFLANLILLESKDLDVILGMDWLARYKGVID 687
>gi|20503033|gb|AAM22721.1|AC092388_5 putative polyprotein [Oryza sativa Japonica Group]
gi|31431879|gb|AAP53591.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 718 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 778 IQGIPFPSDLILLDSKNLDVILGMNWLAQF 807
>gi|78708031|gb|ABB47006.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1826
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVK-----LNVMVASGERFSSLGTCLQTLI 55
LVH + T+L DS +H+F+ R +L V+ L + G + + I
Sbjct: 722 LVHSIPATILFDSGASHSFISVPFVGRNQLGVQRLRNPLLITTPGGVMIAKYYSP-AVPI 780
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
++QG+P D LL + DV+L WL+ F
Sbjct: 781 EIQGIPFPSDLILLDTKNLDVILGMNWLAQF 811
>gi|147807472|emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]
Length = 1573
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + E S +GT C +I L
Sbjct: 530 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 589
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 590 LNVDLRILDMTGYDVILGMDWLAVY 614
>gi|116308877|emb|CAH66012.1| OSIGBa0093M15.2 [Oryza sativa Indica Group]
Length = 1352
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 333 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 392
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 393 ANLILLESKDIDVILGMDWLARYKGVID 420
>gi|20177619|gb|AAM14674.1|AC097446_3 Putative polyprotein [Oryza sativa Japonica Group]
gi|22725914|gb|AAN04924.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|110288618|gb|ABB46768.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1433
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 400 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGVVMTAKYYSPAVPIE 459
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 460 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 489
>gi|116310099|emb|CAH67119.1| H0502G05.10 [Oryza sativa Indica Group]
Length = 1826
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 722 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYIPAVPIE 781
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 782 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 811
>gi|21740445|emb|CAD41630.1| OSJNBa0091D06.6 [Oryza sativa Japonica Group]
Length = 1799
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 695 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYIPAVPIE 754
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 755 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 784
>gi|78708216|gb|ABB47191.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ ++ SL I+++GVP +
Sbjct: 346 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEIKGVPFL 405
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 406 ANLILLESKDLDVILGMDWLA 426
>gi|77555575|gb|ABA98371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 452
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ ++ SL I+++GVP +
Sbjct: 146 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQALSLQRSPSVRIEIKGVPFL 205
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 206 ANLILLESKDLDVILGMDWLA 226
>gi|38567897|emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa Japonica Group]
Length = 1634
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + S L I
Sbjct: 606 LVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRI 664
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++QGVP + + LL + DV+L WL+
Sbjct: 665 EIQGVPFLANLILLESKDLDVILGMDWLA 693
>gi|62734481|gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550403|gb|ABA93200.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1640
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 15 VLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLIV 64
VL DS TH+F+ + A + V S G + SS C I+++ +P
Sbjct: 698 VLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVSSTQYCPSVTIEIEEIPFPS 757
Query: 65 DFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 758 SLILLESKDLDVILGMDWLS 777
>gi|215707240|dbj|BAG93700.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 535
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVR----------QELAVKLNVMVASGERFSSLGTCL 51
+R++G++ K V +L+DS T +F+ ++A L V VA G
Sbjct: 402 MRMLGQIQGKDVFILVDSGSTASFISARVAEGLSELSQIATNLQVKVADGATLHCQSEIP 461
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
QG +LP YD++L WL
Sbjct: 462 ACEWSTQGQKFCTTLKILPLGNYDMILGMDWL 493
>gi|62733030|gb|AAX95147.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549641|gb|ABA92438.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1535
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVASGERFSSLGTCLQTL-IKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + L ++ I++QGVP +
Sbjct: 374 TVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSAPSNQALLSQRSPSVRIEIQGVPFL 433
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL DV+L WL+ + G+I+
Sbjct: 434 ANLILLESNDLDVILGMDWLARYKGVID 461
>gi|19881569|gb|AAM00970.1|AC021892_34 Putative retroelement [Oryza sativa Japonica Group]
gi|78708151|gb|ABB47126.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1425
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 371 TILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 429
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 430 LANLILLESKDLDVILGMDWLTKFKGVID 458
>gi|20177631|gb|AAM14686.1|AC097446_15 Putative polyprotein [Oryza sativa Japonica Group]
gi|31430230|gb|AAP52176.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1859
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 814 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYFSPAVPIE 873
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 874 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 903
>gi|21672026|gb|AAM74388.1|AC119149_3 Putative retroelement [Oryza sativa Japonica Group]
Length = 1458
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 404 TILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 462
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 463 LANLILLESKDLDVILGMDWLTKFKGVID 491
>gi|108862183|gb|ABA96440.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1652
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 656 TILFDSGATHSFISKKFVGMHGLRKEELSTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 714
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 715 LANLILLESKDLDVILGMDWLTKFKGVID 743
>gi|34015184|gb|AAQ56379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1689
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVASGER--FSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + R ++ I+
Sbjct: 625 LIHSIPATILFDSGPSHSFISMPFVGRNQLGVERLRNPLLITTPRGVMTAKYYSPAVPIE 684
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 685 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 714
>gi|5042447|gb|AAD38284.1|AC007789_10 putative polyprotein [Oryza sativa Japonica Group]
Length = 1220
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS H+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 410 TVLFDSGAMHSFIYKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSVTIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|13129460|gb|AAK13118.1|AC080019_10 Polyprotein [Oryza sativa Japonica Group]
Length = 1781
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 687 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 746
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 747 IQGIPFPSDLILLGTKNLDVILGMNWLAQF 776
>gi|78708468|gb|ABB47443.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1494
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 400 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 459
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 460 IQGIPFPSDLILLGTKNLDVILGMNWLAQF 489
>gi|108864659|gb|ABA95357.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2811
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 28 QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ L + V VA+G S ++QG DF LLP + YD++L WL +
Sbjct: 1846 KSLLTPVQVKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYS 1905
Query: 88 LIE 90
++
Sbjct: 1906 PMD 1908
>gi|147795669|emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]
Length = 1495
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + E S +GT C +I L
Sbjct: 445 VRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRA 504
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 505 LNVDLRILDMTGYDVILGMDWLAVY 529
>gi|77549436|gb|ABA92233.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1483
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 386 TVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTLGNQVFSTQYCPSATIEIEEVPFP 445
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 446 SSLILLESKDLDVILGMDWLS 466
>gi|23266289|gb|AAN16328.1| putative polyprotein [Oryza sativa Japonica Group]
gi|31430803|gb|AAP52669.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1263
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 14 TVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++L L V S + S L I++QGVP
Sbjct: 616 TVLFDSGATHSFLSMSFGGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRIEIQGVPF 674
Query: 63 IVDFYLLPFEGYDVVLDTQWLS 84
+ + LL + DV+L WL+
Sbjct: 675 LANLILLESKDLDVILGMDWLA 696
>gi|21671891|gb|AAM74253.1|AC074355_15 Putative retroelement [Oryza sativa Japonica Group]
gi|31430430|gb|AAP52347.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1140
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 246 TVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 305
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 306 SSLILLESKDLDVILGMDWLS 326
>gi|116308884|emb|CAH66018.1| OSIGBa0105N24.2 [Oryza sativa Indica Group]
Length = 1608
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 553 TVLFDSGATHSFLSKSFASNQGMEVISLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 612
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 613 SSLILLESKDRDVILGMDWLS 633
>gi|13699784|gb|AAK38383.1|AC079028_7 hypothetical protein [Arabidopsis thaliana]
Length = 712
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 15 VLIDSRRTHNFVRQELAVKLN-----------VMVASGERFSSLGTCLQTLIKLQGVPLI 63
VL DS TH+FV + K V A G+ G + ++G+ +
Sbjct: 278 VLFDSGATHSFVSPRMIGKGKFQKEPRMDPTVVNAAGGQAMIPEGQVCGIPVSIKGIEMP 337
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF 86
VD ++P E ++V+L WL +
Sbjct: 338 VDLIIIPLEKHEVILGMDWLGKY 360
>gi|18378609|gb|AAL68642.1|AF458766_1 polyprotein [Oryza sativa Japonica Group]
Length = 677
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 3 RVIGRLVHKVVTVLIDSRRTHNFVRQ----------ELAVKLNVMVASGERFSSLGTCLQ 52
RV G + + +LIDS +H+F+ + L + V VASGE
Sbjct: 34 RVKGLIQGTKLLMLIDSGSSHSFLDENIVQTMQGVTSLPQPVKVKVASGEVLICDKQLPD 93
Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
LQG +F LL GYD +L WL G++
Sbjct: 94 YAWWLQGRCYRTNFKLLSLPGYDAILGIDWLQGLGVM 130
>gi|16905211|gb|AAL31081.1|AC091749_10 putative polyprotein [Oryza sativa Japonica Group]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1416
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 344 TMLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 403
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 404 ANLILLESKDLDVILGMDWLA 424
>gi|110288892|gb|ABG66013.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1683
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 611 TMLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 670
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 671 ANLILLESKDLDVILGMDWLA 691
>gi|13129464|gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa Japonica Group]
Length = 2017
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L + +L ++ G ++ I+
Sbjct: 972 LIHSIPATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIE 1031
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 1032 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 1061
>gi|78708466|gb|ABB47441.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1802
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L + +L ++ G ++ I+
Sbjct: 732 LIHSIPATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYYSPAVPIE 791
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 792 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 821
>gi|116309082|emb|CAH66190.1| OSIGBa0144J05.2 [Oryza sativa Indica Group]
Length = 1827
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ + EL+ + V G +S+ LI++Q P
Sbjct: 716 TVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTP-GNSSTSVSFSPSVLIEIQRSPF 774
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 775 LANLILLESKDLDVILGMDWLTKFKGVID 803
>gi|116309100|emb|CAH66206.1| OSIGBa0096F13.1 [Oryza sativa Indica Group]
Length = 1827
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ + EL+ + V G +S+ LI++Q P
Sbjct: 716 TVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTP-GNSSTSVSFSPSVLIEIQRSPF 774
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 775 LANLILLESKDLDVILGMDWLTKFKGVID 803
>gi|21742760|emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa Japonica Group]
Length = 1827
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ + EL+ + V G +S+ LI++Q P
Sbjct: 716 TVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTP-GNSSTSVSFSPSVLIEIQRSPF 774
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 775 LANLILLESKDLDVILGMDWLTKFKGVID 803
>gi|62733127|gb|AAX95244.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734031|gb|AAX96140.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550685|gb|ABA93482.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 9 VHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIKL 57
+H + T+L DS +H+F+ R +L V +L ++ G ++ I++
Sbjct: 761 IHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSHAVPIEI 820
Query: 58 QGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
QG+P + D LL + DV+L WL+ F
Sbjct: 821 QGIPFLSDLILLDTKNLDVILGMNWLAQF 849
>gi|38567665|emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]
Length = 1679
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H V T L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 703 LIHSVPATTLFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 762
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 763 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 792
>gi|38347631|emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]
Length = 1699
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H V T L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 723 LIHSVPATTLFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 782
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 783 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 812
>gi|147781636|emb|CAN75959.1| hypothetical protein VITISV_003125 [Vitis vinifera]
Length = 462
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 54 LIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
L+ +P ++ Y LP G D+VL QWL GL+
Sbjct: 4 LLGXNHIPFVLTLYSLPLTGLDLVLGIQWLEQLGLV 39
>gi|54287623|gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 630 LIHSIPATILFDSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIE 689
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 690 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 719
>gi|50300513|gb|AAT73656.1| unknown protein, similar to polyprotein [Oryza sativa Japonica
Group]
Length = 917
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 630 LIHSIPATILFDSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPVVPIE 689
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 690 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 719
>gi|77555355|gb|ABA98151.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1281
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
++L DS TH+F+ + A + V S G + SS C I+++ VP
Sbjct: 384 SMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNPPGNQVSSTQYCPSATIEIEKVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + D++L WLS
Sbjct: 444 SSLILLESKDLDIILGMDWLS 464
>gi|77552426|gb|ABA95223.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1874
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 971 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 1030
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 1031 IKGVPFLANLILLESKDLDVILGMDWLA 1058
>gi|18652524|gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japonica Group]
gi|31431769|gb|AAP53495.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1839
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 735 LIHSIPATILFDSGASHSFISVPFVGRNQLRVERLRNPLLITTPGGVMTAKYYSPAVPIE 794
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 795 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 824
>gi|18657010|gb|AAL78097.1|AC093568_7 Putative polyprotein [Oryza sativa]
gi|31430586|gb|AAP52480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 429 IKGVPFLANLILLESKDLDVILGMDWLA 456
>gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza sativa Japonica Group]
Length = 1666
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 623 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 682
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 683 IKGVPFLANLILLESKDLDVILGMDWLA 710
>gi|116309775|emb|CAH66816.1| OSIGBa0093K19.3 [Oryza sativa Indica Group]
Length = 575
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 140 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 199
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 200 IKGVPFLANLILLESKDLDVILGMDWLA 227
>gi|38343985|emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa Japonica Group]
gi|38343993|emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa Japonica Group]
Length = 1543
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + S L I
Sbjct: 443 LVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRI 501
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++QG+P + + LL + DV+L WL+
Sbjct: 502 EIQGIPFLANLILLESKDLDVILGMDWLA 530
>gi|116309169|emb|CAH66267.1| OSIGBa0136B09.3 [Oryza sativa Indica Group]
Length = 1469
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + S L I
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRI 427
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++QG+P + + LL + DV+L WL+
Sbjct: 428 EIQGIPFLANLILLESKDLDVILGMDWLA 456
>gi|38347247|emb|CAD39360.2| OSJNBa0059H15.11 [Oryza sativa Japonica Group]
Length = 585
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 327 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSNQALSLQRSPSVRIE 386
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 387 IKGVPFLANLILLESKDLDVILGMDWLA 414
>gi|21741612|emb|CAD40943.1| OSJNBa0027G07.15 [Oryza sativa Japonica Group]
Length = 999
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 140 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPNNQALSLQRSPSVRIE 199
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 200 IKGVPFLANLILLESKDLDVILGMDWLA 227
>gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015280|gb|AAQ56471.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1735
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 638 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPFV 697
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 698 ANLILLESKDLDVILGMDWLA 718
>gi|358343690|ref|XP_003635931.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355501866|gb|AES83069.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 558
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 16 LIDSRRTHNFVRQELAVKLNVMV------------ASGERFSSLGTCLQTLIKLQGVPLI 63
+ID+ TH F+ + A KL +++ A G +SL CL + + G
Sbjct: 369 IIDTGATHCFIAVDCAYKLGLVISDMNGEMVVETPAKGSLTTSL-VCLSCPLSMFGRDFE 427
Query: 64 VDFYLLPFEGYDVVLDTQWL 83
VD LP G DV+ WL
Sbjct: 428 VDLVCLPLTGMDVIFGMNWL 447
>gi|242117516|dbj|BAH79999.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1374
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 402 LVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 461
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D L+ + DV+L WL+ F
Sbjct: 462 IQGIPFPSDLILVDTKNLDVILGMNWLAQF 491
>gi|326497069|dbj|BAK02119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCL 51
IR+ ++ +V+ LIDS TH+FV + A +L +V +A+ +R
Sbjct: 49 IRLRAQVGDQVMLFLIDSGSTHSFVSKAFATRLSVPMVTLPAVSVHMANSQRLRCDSMVQ 108
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
Q ++ G D +L YD VL WLS
Sbjct: 109 QLTWQVPGHTFHTDLRVLELGAYDGVLGMDWLS 141
>gi|297724521|ref|NP_001174624.1| Os06g0170800 [Oryza sativa Japonica Group]
gi|215766712|dbj|BAG98940.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676759|dbj|BAH93352.1| Os06g0170800 [Oryza sativa Japonica Group]
Length = 263
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 28 QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+ L + V VA+G S ++QG DF LLP + YD++L WL +
Sbjct: 53 KSLLTPVQVKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDWLEKYS 112
Query: 88 LIE 90
++
Sbjct: 113 PMD 115
>gi|108708199|gb|ABF95994.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1534
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 430 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAQYYSPAVPIE 489
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 490 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 519
>gi|4680179|gb|AAD27547.1|AF111709_1 polyprotein [Oryza sativa Indica Group]
Length = 1521
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ ++EL + V G +S+ LI++Q P
Sbjct: 410 TVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTP-GNSSTSVSFSPSVLIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|58532059|emb|CAD40391.3| OSJNBa0004L19.10 [Oryza sativa Japonica Group]
Length = 515
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 215 LIHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 274
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 275 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 304
>gi|58532065|emb|CAE05987.3| OSJNBa0004L19.16 [Oryza sativa Japonica Group]
Length = 1731
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 661 LIHSIPATILFDSGASHSFMSVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 720
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 721 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 750
>gi|108708187|gb|ABF95982.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1724
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 11 KVVTVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQG 59
+VV VL DS TH+F+ ++EL+ + V S + LI++Q
Sbjct: 673 EVVLVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHTPRNSSTSVSFS-PSVLIEIQR 731
Query: 60 VPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
P + + LL + DV+L WL+ F G+I+
Sbjct: 732 SPFLANLILLESKDLDVILGMDWLTKFKGVID 763
>gi|6598587|gb|AAF18642.1|AC006228_13 F5J5.15 [Arabidopsis thaliana]
Length = 1617
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 4 VIGRLVHKVVT--------VLIDSRRTHNFVRQELAVKLNVMVASGERFSSL----GTCL 51
+IG L +KV VL DS +H F+ E A + N+ GE+F ++ G L
Sbjct: 411 IIGFLAYKVCVGTLLVGGHVLFDSGASHCFITPESASRDNIRGEPGEQFGAVKIAGGQFL 470
Query: 52 QTLIKLQGV-------PLIVDFYLLPFEGYDVVLDTQWLSTF 86
L + +GV + D + P YD +L WL +
Sbjct: 471 TVLGRAKGVNIQIEEESMPADLIINPVVLYDAILGMDWLDHY 512
>gi|108862573|gb|ABA97909.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1613
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R L V +L ++ G ++ I+
Sbjct: 530 LIHSIPATILFDSGASHSFIYVPFVGRNRLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 589
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 590 IQGIPFPSDLILLDTKNLDVILGINWLAQF 619
>gi|62734534|gb|AAX96643.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1643
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS+ +H+F+ R +L V +L ++ G ++ I+
Sbjct: 599 LIHSIPATILFDSKASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 658
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D L + DV+L+ WL+ F
Sbjct: 659 IQGIPFPSDLIPLDTKYLDVILEMNWLAQF 688
>gi|58533058|emb|CAI44662.1| OSJNBa0061C06.18 [Oryza sativa Japonica Group]
Length = 1522
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 628 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 687
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGVP + + LL + +V+L WL+
Sbjct: 688 IQGVPFLANLILLESKDLNVILGMDWLA 715
>gi|31432273|gb|AAP53928.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1364
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ ++EL+ + V G +S+ LI++Q P
Sbjct: 410 TILFDSGATHSFISKKFVGMHGLRKEELSTLMRVYTL-GNSSTSVSFSPSVLIEIQRSPF 468
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 469 LANLILLESKDLDVILGMDWLTKFKGVID 497
>gi|77556043|gb|ABA98839.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 699 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 758
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 759 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 788
>gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431331|gb|AAP53126.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 1785
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 681 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 740
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 741 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 770
>gi|22138463|gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
gi|78708018|gb|ABB46993.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1499
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 395 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 454
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 455 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 484
>gi|22725911|gb|AAN04921.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430214|gb|AAP52160.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1786
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 682 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 741
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 742 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 771
>gi|116317768|emb|CAH65747.1| OSIGBa0102B11.1 [Oryza sativa Indica Group]
Length = 1601
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 624 TVLFDSGATHSFLSMRFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 683
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 684 ANLILLESKDLDVILGMDWLA 704
>gi|116317857|emb|CAH65888.1| OSIGBa0096I22.1 [Oryza sativa Indica Group]
Length = 1635
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 638 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 697
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 698 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 727
>gi|110288804|gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1840
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 736 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 795
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 796 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 825
>gi|108708200|gb|ABF95995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 700 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 789
>gi|90265240|emb|CAH67693.1| H0624F09.1 [Oryza sativa Indica Group]
gi|90399167|emb|CAJ86096.1| H0818H01.18 [Oryza sativa Indica Group]
Length = 1805
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 701 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 760
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 761 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 790
>gi|53981184|gb|AAV24824.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1661
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 576 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 635
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 636 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 665
>gi|50300545|gb|AAT73686.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1498
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 394 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 453
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 454 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 483
>gi|50300503|gb|AAT73646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1764
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 660 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 719
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 720 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 749
>gi|50300553|gb|AAT73694.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 683 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 742
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 743 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 772
>gi|48926660|gb|AAT47449.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1943
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 686 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 745
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 746 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 775
>gi|38344634|emb|CAE05067.2| OSJNBa0094P09.6 [Oryza sativa Japonica Group]
Length = 1803
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 699 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 758
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 759 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 788
>gi|21741597|emb|CAD39713.1| OSJNBa0052P16.18 [Oryza sativa Japonica Group]
Length = 1804
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 700 LVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 789
>gi|78708045|gb|ABB47020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 989
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 170 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 229
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 230 ANLILLESKDLDVILGMDWLA 250
>gi|77555011|gb|ABA97807.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1188
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 339 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 398
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 399 ANLILLESKDLDVILGMDWLA 419
>gi|77552225|gb|ABA95022.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1473
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 436 ANLILLESKDLDVILGMDWLA 456
>gi|110288660|gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1662
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 646 TVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 705
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 706 ANLILLESKDLDVILGMDWLA 726
>gi|15217260|gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 1571
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 654 TVLFDSGATHSFLSMSFAGNHGMKVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 713
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 714 ANLILLESKDLDVILGMDWLA 734
>gi|78708033|gb|ABB47008.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1804
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 700 LVHSIPATILFDSGASHSFISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 759
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 760 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 789
>gi|77549443|gb|ABA92240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1319
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 384 TVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQAFSTQYCPSATIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|147765520|emb|CAN60437.1| hypothetical protein VITISV_035177 [Vitis vinifera]
Length = 818
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 36 VMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
V++ G G C + LQGV ++ D L G D +L QWL T G I+
Sbjct: 260 VLLKIGVSVKGEGVCRGVQLLLQGVKIVEDVMPLDLGGSDFILGMQWLETLGKIK 314
>gi|54287629|gb|AAV31373.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2408
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
+VL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 384 SVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGNQVFSTQYCPSATIEIEEVPFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|38568032|emb|CAD40406.3| OSJNBa0065J03.2 [Oryza sativa Japonica Group]
Length = 1629
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 13 VTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPL 62
+ +LIDS TH+F+ + + KL V +A G L QG
Sbjct: 506 ILMLIDSGSTHSFIDESIGSKLVGLIPLSRSVTVKIADGGTMKCTQQILGCRWWTQGHYF 565
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF 86
DF LL YD +L WL F
Sbjct: 566 KSDFKLLNLGSYDAILGMDWLEQF 589
>gi|62733803|gb|AAX95912.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549676|gb|ABA92473.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1337
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 369 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 428
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 429 IQEVPFLANLILLESKDLDVILGMDWLARYKGVID 463
>gi|62733279|gb|AAX95396.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|77550170|gb|ABA92967.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1569
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 509 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 568
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 569 IQEVPFLANLILLESKDLDVILGMDWLARYKGVID 603
>gi|62733387|gb|AAX95504.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734599|gb|AAX96708.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550234|gb|ABA93031.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 504
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 328 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 387
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 388 IQEVPFLANLILLESKDLDVILGMDWLARYKGVID 422
>gi|32489461|emb|CAE05815.1| OSJNBa0028M15.7 [Oryza sativa Japonica Group]
Length = 1822
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV---KLNVMVASGERFSSLGTCLQTL-IK 56
L+H + T+L DS +H+F+ R +L V + +++ + E + + I+
Sbjct: 718 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPEGVMTAKYYSPAVPIE 777
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 778 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 807
>gi|147798060|emb|CAN62942.1| hypothetical protein VITISV_034196 [Vitis vinifera]
Length = 945
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + + E S +GT C +I L
Sbjct: 167 VRVLFDTGATHSFISASCANTLGLKMEMVENLLLIXSPMGTNSRXDRICKGCVITLXNRA 226
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 227 LKVDLRILDMIGYDVILGMDWLTVY 251
>gi|62734491|gb|AAX96600.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 1530
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 470 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 529
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 530 IQEVPFLANLILLESKDLDVILGMDWLARYKGVID 564
>gi|19225021|gb|AAL86497.1|AC099040_1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 618 LVNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 677
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 678 IKGVPFLANLILLESKDLDVILGMDWLA 705
>gi|110288811|gb|AAP52698.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1713
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 609 LVNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 668
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 669 IKGVPFLANLILLESKDLDVILGMDWLA 696
>gi|21743214|emb|CAD40069.1| OSJNBa0085C10.22 [Oryza sativa Japonica Group]
Length = 1639
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L H + T+L DS +H+F+ R +L V +L ++ G ++ I+
Sbjct: 594 LFHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGDMTAKYYSPAVPIE 653
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 654 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 683
>gi|50838904|gb|AAT81665.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108709836|gb|ABF97631.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2784
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 1357 LVNSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIE 1416
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 1417 IKGVPFLANLILLESKDLDVILGMDWLA 1444
>gi|50838937|gb|AAT81698.1| putative retrotransposon protein, 5'-partial [Oryza sativa Japonica
Group]
Length = 1633
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 206 LVNSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSSQALSLQRSPSVRIE 265
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 266 IKGVPFLANLILLESKDLDVILGMDWLA 293
>gi|77554454|gb|ABA97250.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1429
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+E + + V G +S+ I++Q P
Sbjct: 392 TVLFDSGATHSFISKKFVGMHGLIREEPSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 450
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 451 LANLILLESKDLDVILGMDWLTKFKGVID 479
>gi|18997227|gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1443
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 346 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 405
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 406 ANLILLESKDLDVILGMDWLA 426
>gi|54287534|gb|AAV31278.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1727
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 555 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSLQRSPSVRIEIKGVPFL 614
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 615 ANLILLESKDLDVILGMDWLA 635
>gi|77554505|gb|ABA97301.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1447
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 368 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 427
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
++GVP + + LL + DV+L WL+
Sbjct: 428 IKGVPFLANLILLEPKDLDVILGMDWLA 455
>gi|224102399|ref|XP_002312663.1| predicted protein [Populus trichocarpa]
gi|222852483|gb|EEE90030.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 15 VLIDSRRTHNFVRQELAVK-----------LNVMVASGERFSSLGTCLQTLIKLQGVPLI 63
VL D+ TH+FV A++ L V + S E + +++QG L+
Sbjct: 450 VLFDTGATHSFVSSYFALRFTKQPILLESPLCVAIPSDEVMFGEYVYVDCEVQVQGRNLL 509
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
D +L G+DV+L WLS
Sbjct: 510 GDLVILEIVGFDVILGMDWLS 530
>gi|90265167|emb|CAH67735.1| H0522A01.6 [Oryza sativa Indica Group]
gi|116310748|emb|CAH67543.1| H0425E08.11 [Oryza sativa Indica Group]
Length = 1475
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 378 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPAVRIEIKGVPFL 437
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 438 ANLILLESKDLDVILGMDWLA 458
>gi|147799941|emb|CAN70500.1| hypothetical protein VITISV_020483 [Vitis vinifera]
Length = 672
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFV----RQELAVKL------NVMVASGERFSSLGTCL 51
+++ G + +L+D TH+F+ Q LA+ L V++ G C
Sbjct: 145 MKIKGTIGSNEXIILVDYGVTHDFLFLDLVQRLALPLTTTTSYGVVMGIGISMKGKSICK 204
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
I +QG+ ++ DF L DV+L WL T G +E
Sbjct: 205 GVCISMQGLIVVEDFVPLELGSTDVILGMPWLGTLGDVE 243
>gi|38346696|emb|CAE02181.2| OSJNBa0080E14.12 [Oryza sativa Japonica Group]
Length = 1476
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL S TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 379 TVLFASGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 438
Query: 64 VDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ LL + DV+L WL+ + G+I+
Sbjct: 439 ANLILLESKDLDVILGMDWLARYKGVID 466
>gi|224109270|ref|XP_002333289.1| predicted protein [Populus trichocarpa]
gi|222835888|gb|EEE74309.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 16/67 (23%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGE------RFS 45
+R++ R+ ++ +TVLIDS THNF+ + +A L NV VA+G RF
Sbjct: 349 MRIMARIENQDLTVLIDSGSTHNFISERIANWLHLPVIPTQPFNVKVANGNPLKCQGRFE 408
Query: 46 SLGTCLQ 52
++ LQ
Sbjct: 409 NIHVLLQ 415
>gi|38347260|emb|CAE05307.2| OSJNBa0056L23.5 [Oryza sativa Japonica Group]
Length = 927
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 8 LVHKV-VTVLIDSRRTHNFV---------------RQELAVKLNVMVASGERFSSLGTCL 51
LVH + T+L DS +H+F+ R L + V + + +S
Sbjct: 681 LVHSIPATILFDSGASHSFISVPFVGSNQLGVERLRNPLLITTPGGVMTAKYYSP----- 735
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
I++QG+P D LL + DV+L WL+ F
Sbjct: 736 AVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQF 770
>gi|108708202|gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1764
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 660 LIHSIPATILFDSGASHSFISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 719
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 720 IQGIPFSSDLILLDTKNLDVILGMNWLAQF 749
>gi|54287531|gb|AAV31275.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287635|gb|AAV31379.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1417
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
LVH + T+L DS +H F+ R +L V +L ++ G ++ I+
Sbjct: 168 LVHSIPATILFDSGASHWFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 227
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 228 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 257
>gi|108862403|gb|ABA97246.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1225
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--N--VMVASGERFSSLGTCLQTLIK 56
L+H + T+L+DS +H+F+ R +L V+ N ++ G ++ I+
Sbjct: 162 LIHSIPATILLDSGASHSFISVPFMGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 221
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 222 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 251
>gi|34015248|gb|AAQ56440.1| putative polyprotein [Oryza sativa Japonica Group]
gi|34015300|gb|AAQ56491.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1222
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA-------VKLNVMV---ASGERFSSLGTCLQTLIKLQGVPLI 63
TVL DS +H+F+ + +A V+L +++ G ++ C I+++ P +
Sbjct: 221 TVLFDSGASHSFISKRIAGTHGLSVVELKILMRVHTPGNDMNTTHYCPSVTIEIKRSPFL 280
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 281 SNLILLESKDLDVILGMDWLT 301
>gi|449455495|ref|XP_004145488.1| PREDICTED: uncharacterized protein LOC101209704 [Cucumis sativus]
Length = 1503
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 31 AVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ V + +G + G C + +KL+ + ++ DF + D+VL QWL + G ++
Sbjct: 670 GTRFGVTIGNGNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDSTGTMK 729
>gi|357130317|ref|XP_003566796.1| PREDICTED: retrotransposon-derived protein PEG10-like [Brachypodium
distachyon]
Length = 717
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVA----SGERFSSLGTCLQTLIKL 57
IR+ + +KV+ +LIDS +H+F+ L LN V + + ++ G LQ K+
Sbjct: 405 IRLRCLVGNKVLIMLIDSGSSHSFIDSHLLTSLNYSVVPIPLTAVKVAN-GAVLQCDSKV 463
Query: 58 QGVPLIV-------DFYLLPFEGYDVVLDTQWLSTFG 87
G+ V DF ++ YD +L WL +G
Sbjct: 464 SGLTWWVQHHTFQYDFRVVQLGEYDAILGMDWLKQWG 500
>gi|34015342|gb|AAQ56531.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVASGERFS-SLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I+++GVP +
Sbjct: 376 TVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPRNQALSLQRSPSVRIEIKGVPFL 435
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 436 ANLILLESKDLDVILGMDWLA 456
>gi|62733129|gb|AAX95246.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550683|gb|ABA93480.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1311
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 4 VIGR-LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCL 51
V+G+ LV+ V TVL+DS +H+FV + A +K ++++ + G + C
Sbjct: 267 VLGKFLVNSVPATVLLDSGASHSFVSRSCASQHQFPTIPLKCSLLIQTPGSEMRTQTGCP 326
Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLST 85
+ I+++GV + +L DV+L WL +
Sbjct: 327 RVKIEIEGVEFFANLIMLDTPQLDVILGMDWLHS 360
>gi|116317830|emb|CAH65865.1| OSIGBa0132I10.1 [Oryza sativa Indica Group]
Length = 1670
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 12 VVTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVP 61
+ TVL DS TH+F+ A ++ +MV++ + SL I+++GVP
Sbjct: 598 LATVLFDSGATHSFLSVSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIKGVP 657
Query: 62 LIVDFYLLPFEGYDVVLDTQWLS 84
+ + LL + DV+L WL+
Sbjct: 658 FLANLILLESKDLDVILGMDWLA 680
>gi|19881755|gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Japonica Group]
gi|31430462|gb|AAP52371.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1784
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 680 LIHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 739
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 740 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 769
>gi|116317844|emb|CAH65877.1| OSIGBa0160I04.3 [Oryza sativa Indica Group]
Length = 1786
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 682 LIHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 741
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 742 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 771
>gi|116311093|emb|CAH68022.1| H0807C06-H0308C08.9 [Oryza sativa Indica Group]
Length = 1804
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ + +L V +L ++ G ++ I+
Sbjct: 728 LIHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 787
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 788 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 817
>gi|77555030|gb|ABA97826.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNF-----------VRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F +R+EL+ + V G +S+ I++Q P
Sbjct: 116 TVLFDSGATHSFIGKKFVGIHGLIREELSTPMRVHTL-GNSSTSVQFSPSITIEIQRSPF 174
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + D+ L WL+ F G+I+
Sbjct: 175 LANLILLESKDLDINLGMDWLTKFKGVID 203
>gi|374081772|dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
Length = 1152
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 1 MIRVIGRLV--HKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKL- 57
+I ++G ++ + V+ L D+ + FV ++A KLN+ + E+ S+ T L + K+
Sbjct: 9 LIHLLGTIIIDNLAVSALFDTGASGTFVSSKIARKLNLPLQELEKPLSITTPLGRVTKVA 68
Query: 58 QGVPLI----------VDFYLLPFEGYDVVLDTQWLS 84
Q +P + D +L F +DV+L WLS
Sbjct: 69 QVLPQVDVRVGAYRCKSDLTVLDFTNFDVILGMDWLS 105
>gi|34015152|gb|AAQ56348.1| putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1316
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V +S+ I+++ P
Sbjct: 535 TVLFDSGATHSFISKKFVGVHGLIREELSTPMRVHTPENSS-TSVQFSPSVTIEIRRSPF 593
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 594 LANLILLESKDLDVILGMDWLTKFKGVID 622
>gi|110288673|gb|ABG65937.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1251
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 319 LVNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIE 378
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 379 IQEVPFLANLTLLESKDLDVILGMDWLARYKGVID 413
>gi|22655778|gb|AAN04195.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1523
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 591 LVNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIE 650
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 651 IQEVPFLANLTLLESKDLDVILGMDWLARYKGVID 685
>gi|19881606|gb|AAM01007.1|AC090488_7 Putative retroelement [Oryza sativa Japonica Group]
Length = 1496
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 562 LVNSVPATVLFDSGATHSFLSMSFAGNHRMEVEDLRRPLMVSTPSNQALSLQRSPSIRIE 621
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 622 IQEVPFLANLTLLESKDLDVILGMDWLARYKGVID 656
>gi|338808432|gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 12 VVTVLIDSRRTHNFVRQELAVKLNVMV----------ASGERFSSLGTCLQTLIKLQGVP 61
+ VL D+ TH+F+ N+ + ++G R + CL ++++G+
Sbjct: 505 IAEVLFDTGATHSFITASWVEAHNLPITTMSTPIQIDSAGGRIRADSICLNVSVEIRGIA 564
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
+ ++ +G DV+L WL +
Sbjct: 565 FPANLIVMGTQGIDVILGMNWLDKY 589
>gi|116309157|emb|CAH66257.1| OSIGBa0139I12.6 [Oryza sativa Indica Group]
Length = 1443
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 346 TVLFDSGATHSFLSKSFASKHGIEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFP 405
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 406 SSLILLESKDLDVILGMDWLS 426
>gi|4544430|gb|AAD22339.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1411
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 34 LNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
L+V VA G+ + LG I++ G + D + P E YDV+L WL +
Sbjct: 363 LHVKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHY 415
>gi|413959064|ref|ZP_11398302.1| hypothetical protein BURK_004062 [Burkholderia sp. SJ98]
gi|413940634|gb|EKS72595.1| hypothetical protein BURK_004062 [Burkholderia sp. SJ98]
Length = 441
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 21 RTHNFVRQELAVKL-NVMVASGERFSSLGTCLQTLIKLQG--VPLIVDFYL 68
R H E AVKL N MVA+GE F ++G L+T +KL+ +P VD+++
Sbjct: 38 RAHQ--SNEKAVKLYNDMVAAGESFEAIGKLLETSLKLRNALIPRNVDYFV 86
>gi|54633397|gb|AAV35799.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|108709586|gb|ABF97381.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1238
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA-------VKLNVMV---ASGERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ + A VKL + + G ++ C +++QG+
Sbjct: 395 TILFDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFP 454
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 455 ANLILLESKDLDVILRMDWLT 475
>gi|37991871|gb|AAR06317.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1233
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA-------VKLNVMV---ASGERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ + A VKL + + G ++ C +++QG+
Sbjct: 395 TILFDSSATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFP 454
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 455 ANLILLESKDLDVILRMDWLT 475
>gi|52353559|gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 9 VHKV-VTVLIDSRRTHNFV------RQELAV-KLN---VMVASGERFSSLGTCLQTLIKL 57
+H + T+L DS +H+F+ R +L V +L ++ G ++ I++
Sbjct: 371 IHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEI 430
Query: 58 QGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
QG+P D LL + DV+L WL+ F
Sbjct: 431 QGIPFPSDLILLDTKNLDVILGMNWLAQF 459
>gi|38347143|emb|CAE02432.2| OSJNBa0039G19.3 [Oryza sativa Japonica Group]
Length = 1472
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
T+L DS TH+F+ R+EL+ + V G +S+ I++Q P
Sbjct: 392 TILFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSITIEIQRSPF 450
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+ WL+ F G+I+
Sbjct: 451 LANLILLESKDLDVIHGMDWLTKFKGVID 479
>gi|116309152|emb|CAH66252.1| OSIGBa0139I12.1 [Oryza sativa Indica Group]
Length = 1585
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 599 TMLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 658
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 659 SSLILLESKDLDVILGMDWLS 679
>gi|116317882|emb|CAH65910.1| OSIGBa0102O13.1 [Oryza sativa Indica Group]
Length = 1332
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 15 VLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLIV 64
VL DS TH+F+ + A K + V S G + S C I+++ VP
Sbjct: 365 VLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQAFSTRYCPSVTIEIEEVPFPS 424
Query: 65 DFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WL+
Sbjct: 425 SLILLESKDLDVILGMDWLT 444
>gi|52353549|gb|AAU44115.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1717
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGT----------CLQTLIKLQGVPLI 63
TVL DS TH+F+ + + V S ER + T C I+++ VP
Sbjct: 644 TVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGNQVFSTQYCPSATIEIEEVPFP 703
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 704 SSLILLESKDLDVILGMDWLS 724
>gi|77555314|gb|ABA98110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1226
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
+VL DS TH+F+ + A + V S G + S C I+++ VP
Sbjct: 382 SVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTLGNQVFSTQYCPSATIEIEEVPFP 441
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 442 SSLILLESKDLDVILGMDWLS 462
>gi|242081169|ref|XP_002445353.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
gi|241941703|gb|EES14848.1| hypothetical protein SORBIDRAFT_07g011900 [Sorghum bicolor]
Length = 1488
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 15 VLIDSRRTHNFVRQELAVKLNVMV-----------ASGERFSSLGTCLQTLIKLQGVPLI 63
VL DS +H+F+ Q A K V A+G + ++ I ++G
Sbjct: 327 VLFDSGASHSFMSQTFASKHGQHVIDLDSGKFCISAAGNQIATNQVVRDVQIAIEGRNYS 386
Query: 64 VDFYLLPFEGYDVVLDTQWLSTFGLI 89
+ +LP G DV+L +W+S G++
Sbjct: 387 ANLVILPGLGIDVILGMKWMSDHGVL 412
>gi|147828587|emb|CAN59996.1| hypothetical protein VITISV_020887 [Vitis vinifera]
Length = 701
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERF----SSLGT-------CLQTLIKLQGVP 61
V VL D+ TH+F+ A L + E S +G C +I L
Sbjct: 9 VRVLFDTGATHSFISASCANALGLKTERVENLLLIESPMGMNXRVDRICKGCVITLADRA 68
Query: 62 LIVDFYLLPFEGYDVVLDTQWLSTF 86
L VD +L GYDV+L WL+ +
Sbjct: 69 LNVDLRILDMXGYDVILGMDWLTVY 93
>gi|50897320|gb|AAT85771.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108709111|gb|ABF96906.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1169
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--N--VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ G ++ I+
Sbjct: 79 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 138
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
+QG+P D LL + DV+L WL+ F +
Sbjct: 139 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQCV 171
>gi|38344714|emb|CAE05256.2| OSJNBb0115I09.18 [Oryza sativa Japonica Group]
Length = 1134
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--N--VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ G ++ I+
Sbjct: 174 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 233
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 234 IQGIPFPSDLILLDSKNLDVILGMNWLAQF 263
>gi|39545594|emb|CAE02838.3| OSJNBa0014F04.4 [Oryza sativa Japonica Group]
Length = 532
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+ + +EL + V G +S+ LI++Q P
Sbjct: 78 TVLFDSSATHSLISKRFVGMHGLRNEELCTPMRVHTP-GNSSTSVSYSRSVLIEIQRSPF 136
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL E D++L WL+ F G+I+
Sbjct: 137 LANLILLESEDLDIILGMDWLTKFKGVID 165
>gi|357448513|ref|XP_003594532.1| Zinc finger protein GIS2 [Medicago truncatula]
gi|355483580|gb|AES64783.1| Zinc finger protein GIS2 [Medicago truncatula]
Length = 499
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMV------------ASGERFSSLG 48
+IR + + ++ +ID+ TH F+ + A L +++ A G +SL
Sbjct: 348 LIRGTCYINNTLLVAIIDTGATHCFIAFDCASTLGLVMSDMNGEMVVETPAKGSVTTSL- 406
Query: 49 TCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
CL+ + + G +D LP G DV+L WL
Sbjct: 407 VCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 441
>gi|110288861|gb|ABB47133.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1577
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TV DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 570 TVPFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 629
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 630 ANLILLESKDLDVILGMDWLA 650
>gi|19881555|gb|AAM00956.1|AC021892_20 Putative polyprotein [Oryza sativa Japonica Group]
Length = 1167
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TV DS TH+F+ A ++ +MV++ + SL I++QGVP +
Sbjct: 117 TVPFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFL 176
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 177 ANLILLESKDLDVILGMDWLA 197
>gi|77553211|gb|ABA96007.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ +++L+ + V G +S+ LI++Q P
Sbjct: 301 TVLFDSGATHSFISKKFVGMHGLRKEKLSTPMRVHTP-GNSSTSVSYSPSVLIEIQISPF 359
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 360 LANLILLESKDLDVILGMDWLTKFKGVID 388
>gi|21397270|gb|AAM51834.1|AC105730_8 Putative plant disease resistance polyprotein [Oryza sativa
Japonica Group]
gi|108706267|gb|ABF94062.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 624
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 8 LVH-KVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIK 56
LVH KV+ +L+DS +HNF+ A L V VA+G+
Sbjct: 204 LVHSKVLLLLVDSGSSHNFIDYNFAQMLGLPLKPIPSTLVKVANGDCLPCQYVVPGFFWW 263
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+QG D ++ G+D +L WL +G
Sbjct: 264 IQGHTFTYDMRVVTLGGHDAILGMDWLEQWG 294
>gi|54291804|gb|AAV32173.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1632
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 14 TVLIDSRRTHNFV-----------RQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPL 62
TVL DS TH+F+ R+EL+ + V G +S+ I++Q
Sbjct: 698 TVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP-GNSSTSVQFSPSRTIEIQRSTF 756
Query: 63 IVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
+ + LL + DV+L WL+ F G+I+
Sbjct: 757 LANLILLESKDLDVILGMDWLTKFKGVID 785
>gi|38347263|emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
Length = 1472
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ MV++ + SL I+++GVP +
Sbjct: 375 TVLFDSGATHSFLSMSFAGNHGMEVEDLRCPWMVSTPSNQALSLQRSPSVRIEIKGVPFL 434
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 435 ANLILLESKDLDVILGMDWLA 455
>gi|28209489|gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1155
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 8 LVH-KVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIK 56
LVH KV+ +L+DS +H+F+ A L V VA+G+
Sbjct: 398 LVHSKVLLLLVDSGSSHSFIDYNFAHMLGLPLKPIPSTLVKVANGDCLPCQYVVPSFSWW 457
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
+QG D ++ EG+D +L WL +G
Sbjct: 458 IQGHTFTYDMRVVTLEGHDAILGMDWLEQWG 488
>gi|62734324|gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550058|gb|ABA92855.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1636
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + S L I
Sbjct: 532 LVNSVPTTVLFDSGATHSFLSMSFAGNHGMEVEDLIRPLMVSTPSNQALS-LQRSPSVRI 590
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
++Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 591 EIQEVPFLANLILLESKDLDVILGMDWLARYKGVID 626
>gi|62734487|gb|AAX96596.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|108864323|gb|ABA93205.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1255
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--N--VMVASGERFSSLGTCLQTLIK 56
L+H + T+L DS+ +H+F+ R +L V+ N ++ G ++ I+
Sbjct: 181 LIHSIPATILFDSKASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIE 240
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D L + DV+L+ WL+ F
Sbjct: 241 IQGIPFPSDLIPLDTKYLDVILEMNWLAQF 270
>gi|38347459|emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]
Length = 1581
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 477 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 536
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+Q VP + + LL + DV+L WL+
Sbjct: 537 IQEVPFLANLILLESKDLDVILGMDWLA 564
>gi|14716942|emb|CAC44140.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 13 VTVLIDSRRTHNFV------RQELAVK---LNVMVASGERFSSLGT-CLQTLIKLQGVPL 62
+T L DS TH+F+ R +L+V +++V++ + ++ + CL + +Q
Sbjct: 157 LTALFDSGATHSFIAMGCVNRLKLSVSALPFDLVVSTPAKTLTVNSACLHCRMTIQNRDF 216
Query: 63 IVDFYLLPFEGYDVVLDTQWLS 84
+V+ LP + +V+L W+S
Sbjct: 217 LVNLICLPLQSLEVILGMDWMS 238
>gi|62733026|gb|AAX95143.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77549637|gb|ABA92434.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1847
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLI 55
LV+ V TVL DS TH+F+ ++L L V S + S L I
Sbjct: 808 LVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRI 866
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
++Q VP + + LL + DV+L WL+ + G+I+
Sbjct: 867 EIQEVPFLANLILLESKDLDVILGMDWLARYKGVID 902
>gi|116309186|emb|CAH66282.1| OSIGBa0116O04.4 [Oryza sativa Indica Group]
Length = 1527
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 644 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFP 703
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 704 SSLILLESKDLDVILGMDWLS 724
>gi|116309038|emb|CAH66151.1| OSIGBa0097I11.3 [Oryza sativa Indica Group]
Length = 1477
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 594 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFP 653
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 654 SSLILLESKDLDVILGMDWLS 674
>gi|116309187|emb|CAH66283.1| OSIGBa0116O04.5 [Oryza sativa Indica Group]
Length = 1477
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 594 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFP 653
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 654 SSLILLESKDLDVILGMDWLS 674
>gi|116309037|emb|CAH66150.1| OSIGBa0097I11.2 [Oryza sativa Indica Group]
Length = 1527
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 644 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQYCPSVTIEIEEVLFP 703
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 704 SSLILLESKDLDVILGMDWLS 724
>gi|39545598|emb|CAE02842.3| OSJNBa0014F04.8 [Oryza sativa Japonica Group]
Length = 1429
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 594 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEIEDLRRPLMVSTPSNQALSLKRSPSVRIE 653
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+QGV + + LL + DV+L WL+
Sbjct: 654 IQGVSFLANLILLESKDLDVILGMDWLA 681
>gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza sativa Japonica Group]
gi|38567639|emb|CAE75877.1| B1234D02.1 [Oryza sativa Japonica Group]
Length = 1742
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 15 VLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLI 63
VL DS TH+F+ ++L L V S + S L I++QGVP +
Sbjct: 646 VLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSVRIEIQGVPFL 704
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 705 ANLILLESKDLDVILGMDWLA 725
>gi|38346484|emb|CAE03723.2| OSJNBa0021F22.17 [Oryza sativa Japonica Group]
Length = 1083
Score = 34.7 bits (78), Expect = 7.2, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVK-----LNVMVASGERFSSLGTCLQTLI 55
L+H + T+L DS +H+F+ R +L V+ L + G + +
Sbjct: 563 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMIAKYYSP-AVPT 621
Query: 56 KLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
++QG+P D LL + DVVL WL+ F
Sbjct: 622 EIQGIPFPSDLILLDTKNLDVVLGMNWLAQF 652
>gi|108862184|gb|ABA96442.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1539
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA-------VKLNVMV---ASGERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ ++ A V+L + + G ++ C I+++ P +
Sbjct: 462 TVLFDSGATHSFISKKFAGTHGLSVVELKIPMRVHTPGNDMNTAHYCPSMTIEIKRSPFL 521
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 522 SNLILLESKDLDVILGMDWLT 542
>gi|38605881|emb|CAD40007.3| OSJNBb0052B05.10 [Oryza sativa Japonica Group]
Length = 1963
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ A ++ +MV++ + SL I++Q VP +
Sbjct: 984 TVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQEVPFL 1043
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + DV+L WL+
Sbjct: 1044 ANLILLESKDLDVILGMDWLA 1064
>gi|32492194|emb|CAE03534.1| OSJNBa0061C06.22 [Oryza sativa Japonica Group]
gi|39545591|emb|CAE02835.3| OSJNBa0014F04.1 [Oryza sativa Japonica Group]
Length = 1450
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFV------RQELAVKL--NVMVAS--GERFSSLGTCLQTLIK 56
L+H + T+L DS +H+F+ R +L V+ N ++ + G ++ I+
Sbjct: 340 LIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTLGGVMTAKYYSPAVPIE 399
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
+QG+P D LL + DV+L WL+ F
Sbjct: 400 IQGIPFPSDLILLDTKNLDVILGMNWLAQF 429
>gi|116308880|emb|CAH66015.1| OSIGBa0093M15.5 [Oryza sativa Indica Group]
Length = 986
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVAS----------GERFSSLGTCLQTLIKLQGVPLI 63
TVL DS TH+F+ + A K + V S G + S C I+++ V
Sbjct: 384 TVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTRYCPSVTIEIEEVLFP 443
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
LL + DV+L WLS
Sbjct: 444 SSLILLESKDLDVILGMDWLS 464
>gi|77551513|gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1762
Score = 34.7 bits (78), Expect = 8.3, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 12 VVTVLIDSRRTHNFVR-----------QELAVKLNVMVASGERFSSLGTCLQTLIKLQGV 60
V+ VL DS TH+F+ ++L L V S + S L I++Q V
Sbjct: 752 VILVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALS-LQRSPSIRIEIQEV 810
Query: 61 PLIVDFYLLPFEGYDVVLDTQWLSTF-GLIE 90
P + + LL + D++L WL+ + G+I+
Sbjct: 811 PFLANLILLESKDLDIILGMDWLARYKGMID 841
>gi|7682782|gb|AAF67363.1| Hypothetical protein T32B20.f [Arabidopsis thaliana]
Length = 1504
Score = 34.3 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 15 VLIDSRRTHNFVRQELAVKLNVMVASGERFSSL----GTCLQTLIKLQGVPLIV------ 64
VL DS +H F+ E A + N+ GE+ ++ G L L + +GV + +
Sbjct: 454 VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFLAVLERAKGVDIQIAGESMP 513
Query: 65 -DFYLLPFEGYDVVLDTQWLSTF 86
+ P E YDV+L WL +
Sbjct: 514 AHLIISPVELYDVILGMDWLDHY 536
>gi|62734591|gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550164|gb|ABA92961.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1071
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 14 TVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEG 73
TVL DS TH+F + A + V S R T I+++G+ LL E
Sbjct: 479 TVLFDSGATHSFFSKSFAGNHGMEVVSLGRPIIANT--PVFIEIEGISFPSSLILLESEE 536
Query: 74 YDVVLDTQWLS 84
+DV+L WL+
Sbjct: 537 FDVILGMDWLT 547
>gi|21672017|gb|AAM74379.1|AC116603_15 Putative retroelement [Oryza sativa Japonica Group]
Length = 987
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 14 TVLIDSRRTHNFVRQELA-------VKLNVMV---ASGERFSSLGTCLQTLIKLQGVPLI 63
T+L DS TH+F+ + A VKL + + G ++ C +++QG+
Sbjct: 279 TILFDSGATHSFISKRFAGAHRLYLVKLKIPMRVHTPGGGMTTTHYCPSVTVEIQGLIFP 338
Query: 64 VDFYLLPFEGYDVVLDTQWLS 84
+ LL + D++L WL+
Sbjct: 339 ANLILLESKDLDIILGMDWLT 359
>gi|449502909|ref|XP_004161777.1| PREDICTED: uncharacterized protein LOC101232599 [Cucumis sativus]
Length = 446
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+++ G + K V VL+D THNF+ L + L V++ SG C
Sbjct: 365 MKIRGTIQSKEVVVLVDCGATHNFISDRLVMTLKLPSKDTSNYGVILGSGTTIKGKRVCE 424
Query: 52 QTLIKLQGVPLIVDFYLLPFEG 73
+ + L G ++ +F L +EG
Sbjct: 425 KVELDLNGWTVMENFLPLDWEG 446
>gi|21671877|gb|AAM74239.1|AC074355_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1065
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCL 51
+R++G + K V +L+DS T +F+ ++A L V VA+G S+ TCL
Sbjct: 476 MRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQGVVTLEPPVQVKVANG----SILTCL 531
Query: 52 QTLIKL----QGVPLIVDFYLLPFEGYDVVLDTQWL 83
++ + QG D +L YD++L WL
Sbjct: 532 TSVPRCEWMTQGWVFYTDLKVLNLGSYDMILGMDWL 567
>gi|449456255|ref|XP_004145865.1| PREDICTED: enzymatic polyprotein-like [Cucumis sativus]
Length = 818
Score = 34.3 bits (77), Expect = 9.3, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 31 AVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
+ V + + + G C + +KL+ + ++ DF + D+VL QWL T G ++
Sbjct: 404 GTRFGVTIGNDNQCEGSGICKRVKVKLKELTIVADFLAVELGTVDLVLGMQWLDTTGTMK 463
>gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]
Length = 1092
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 5 IGRLVHKV-VTVLIDSRRTHNFV------RQELAVKL--N--VMVASGERFSSLGTCLQT 53
+ L+H + T+L DS +H+F+ + +L V+ N ++ G ++
Sbjct: 57 VATLIHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYYSPAV 116
Query: 54 LIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
I++QG+P D LL + DV+L WL+ F
Sbjct: 117 PIEIQGIPFPSDLILLDTKNLDVILGMNWLAQF 149
>gi|108864168|gb|ABA92247.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1378
Score = 34.3 bits (77), Expect = 9.5, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 8 LVHKV-VTVLIDSRRTHNFVRQELA---------VKLNVMVAS-GERFSSLGTCLQTLIK 56
LV+ V TVL DS TH+F+ A ++ +MV++ + SL I+
Sbjct: 600 LVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVRIE 659
Query: 57 LQGVPLIVDFYLLPFEGYDVVLDTQWLS 84
+GVP + + LL + DV+L WL+
Sbjct: 660 NKGVPFLANLILLESKDLDVILGMDWLA 687
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.144 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,283,322,676
Number of Sequences: 23463169
Number of extensions: 40127464
Number of successful extensions: 101761
Number of sequences better than 100.0: 632
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 525
Number of HSP's that attempted gapping in prelim test: 101231
Number of HSP's gapped (non-prelim): 643
length of query: 90
length of database: 8,064,228,071
effective HSP length: 60
effective length of query: 30
effective length of database: 6,656,437,931
effective search space: 199693137930
effective search space used: 199693137930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 69 (31.2 bits)