BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045784
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SQW|A Chain A, Crystal Structure Of Kd93, A Novel Protein Expressed In
          The Human Pro
          Length = 188

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 1  MIRVIGRLVHKVVTVLIDSR------RTHN---FVRQELAVKLNVMVASGERFSSLGTCL 51
          M   I + + + + +L+D        R HN   +   E  +KL   + SG++  SLGTC 
Sbjct: 12 MFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANI-SGDKLVSLGTCF 70

Query: 52 QTLIKLQGVPLIVDF--YLLPFEGYDV 76
              K     L V    YL P+  Y V
Sbjct: 71 GKFTKTHKFRLHVTALDYLAPYAKYKV 97


>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics
           Consortium Target Hr2118: A Human Homolog Of
           Saccharomyces Cerevisiae Nip7p
          Length = 190

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 21  RTHNFVRQELAVKLNVMVA--SGERFSSLGTCLQTLIKLQGVPLIVDF--YLLPFEGYDV 76
           R HN     ++ K+  + A  SG++  SLGTC     K     L V    YL P+  Y V
Sbjct: 48  RLHNDRVYYVSEKIXKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKV 107


>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T05|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T05|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T05|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T07|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
           With A Naturally Occurring Bis-Indole Alkaloid
 pdb|3T07|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
           With A Naturally Occurring Bis-Indole Alkaloid
 pdb|3T07|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
           With A Naturally Occurring Bis-Indole Alkaloid
 pdb|3T07|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase In Complex
           With A Naturally Occurring Bis-Indole Alkaloid
 pdb|3T0T|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T0T|B Chain B, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T0T|C Chain C, Crystal Structure Of S. Aureus Pyruvate Kinase
 pdb|3T0T|D Chain D, Crystal Structure Of S. Aureus Pyruvate Kinase
          Length = 606

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 12/56 (21%)

Query: 2   IRVIGRLVHKVVTVLIDSR----RTHNFVR--------QELAVKLNVMVASGERFS 45
           IR + + + K+V +L+D++    RTHN            E+ V +N +  + E+FS
Sbjct: 71  IRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFS 126


>pdb|2C0N|A Chain A, Crystal Structure Of A197 From Stiv
          Length = 203

 Score = 25.0 bits (53), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 4  VIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLI 63
          +I  LV   +  +I SRR H  V++E+A+   +     +  + L   +        VP+ 
Sbjct: 17 LIDFLVKNDIEYVILSRRNHVAVQREIALDXFLEXKDYDTLAFLDEDV--------VPIE 68

Query: 64 VDFYLLPF---EGYDVVLDTQWLST 85
          +DF  +     EGYDVV    +L T
Sbjct: 69 IDFQKVEAKFNEGYDVVCGYYYLKT 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.144    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,409,240
Number of Sequences: 62578
Number of extensions: 74030
Number of successful extensions: 166
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 4
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)