BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045786
         (453 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 32.7 bits (73), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 173 RLAQNREAARKSRLRKKAYVQQLES 197
           RL +NREAAR+SR +KK YV+ LE+
Sbjct: 5   RLMKNREAARESRRKKKEYVKSLEN 29


>pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
 pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
          Length = 542

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 37  EQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHR 96
           E   GF L DA   +G+ +LN+ + S Q     P  +V F +    S +NL+      H 
Sbjct: 218 EDKQGFTLYDATXGSGSLLLNAKRYSRQ-----PQTVVYFGQELNTSTYNLARXNXILHG 272

Query: 97  LPFEKNHRSNLVSISSGNTENW 118
           +P E     N  ++     E+W
Sbjct: 273 VPIENQFLHNADTLD----EDW 290


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.126    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,257,758
Number of Sequences: 62578
Number of extensions: 344387
Number of successful extensions: 761
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 4
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)