Query 045786
Match_columns 453
No_of_seqs 185 out of 248
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 8.8E-34 1.9E-38 234.0 7.7 79 250-328 1-80 (80)
2 smart00338 BRLZ basic region l 98.5 2.2E-07 4.7E-12 73.3 6.4 41 167-210 3-43 (65)
3 PF00170 bZIP_1: bZIP transcri 98.4 4E-07 8.6E-12 71.7 5.8 43 168-213 4-46 (64)
4 PF07716 bZIP_2: Basic region 98.4 8.6E-07 1.9E-11 68.0 6.5 44 166-213 2-45 (54)
5 KOG3584 cAMP response element 97.3 0.00035 7.7E-09 70.7 5.6 38 166-206 288-325 (348)
6 PF13801 Metal_resist: Heavy-m 96.8 0.056 1.2E-06 44.9 13.4 85 330-427 40-124 (125)
7 COG3678 CpxP P pilus assembly/ 96.5 0.03 6.4E-07 52.5 11.1 108 305-434 34-144 (160)
8 KOG4343 bZIP transcription fac 95.9 0.014 3E-07 63.6 5.9 45 165-212 274-321 (655)
9 PRK12750 cpxP periplasmic repr 95.9 0.32 7E-06 45.8 14.4 96 327-436 49-152 (170)
10 PF03131 bZIP_Maf: bZIP Maf tr 95.5 0.015 3.2E-07 49.3 3.8 33 167-199 28-60 (92)
11 KOG0709 CREB/ATF family transc 93.8 0.055 1.2E-06 58.1 3.7 45 167-211 249-293 (472)
12 KOG0837 Transcriptional activa 90.6 0.36 7.8E-06 48.8 4.7 29 169-197 206-234 (279)
13 PRK10455 periplasmic protein; 90.4 3.2 7E-05 38.9 10.6 102 308-431 35-140 (161)
14 PRK12751 cpxP periplasmic stre 89.9 7.2 0.00016 36.8 12.5 101 328-446 54-155 (162)
15 PRK10363 cpxP periplasmic repr 89.2 6.4 0.00014 37.6 11.6 98 328-445 48-148 (166)
16 PF07813 LTXXQ: LTXXQ motif fa 86.2 4 8.7E-05 33.3 7.5 85 328-429 12-96 (100)
17 KOG4005 Transcription factor X 84.4 2.3 5.1E-05 42.9 6.1 40 167-209 67-106 (292)
18 KOG3119 Basic region leucine z 75.9 6 0.00013 39.9 5.9 26 165-190 190-215 (269)
19 KOG4571 Activating transcripti 65.7 17 0.00037 37.6 6.6 50 165-214 222-283 (294)
20 KOG3725 SH3 domain protein SH3 61.7 77 0.0017 32.9 10.2 24 267-290 236-259 (375)
21 PF13628 DUF4142: Domain of un 51.1 1.8E+02 0.0038 25.8 10.1 97 185-284 30-134 (139)
22 KOG3759 Uncharacterized RUN do 38.6 1.2E+02 0.0026 33.8 7.8 100 183-313 142-246 (621)
23 KOG2391 Vacuolar sorting prote 35.1 2.2E+02 0.0047 30.5 8.8 25 340-364 244-268 (365)
24 PF06013 WXG100: Proteins of 1 33.8 2.2E+02 0.0047 21.8 9.7 52 190-257 18-69 (86)
25 PF11459 DUF2893: Protein of u 33.0 98 0.0021 25.8 4.8 41 397-437 21-61 (69)
26 PRK11702 hypothetical protein; 31.1 22 0.00049 31.8 0.9 13 182-194 5-17 (108)
27 COG3923 PriC Primosomal replic 29.4 5.4E+02 0.012 25.1 12.5 85 191-287 6-91 (175)
28 cd00223 TOPRIM_TopoIIB_SPO TOP 27.8 62 0.0013 29.6 3.2 51 310-361 90-141 (160)
29 COG5074 t-SNARE complex subuni 26.5 5.6E+02 0.012 26.4 9.7 100 172-285 75-190 (280)
30 PF10552 ORF6C: ORF6C domain; 26.3 4.5E+02 0.0096 23.1 8.8 45 270-324 69-113 (116)
31 PF11471 Sugarporin_N: Maltopo 26.2 60 0.0013 26.1 2.5 13 201-213 40-52 (60)
32 COG3165 Uncharacterized protei 24.9 4.1E+02 0.0088 26.5 8.3 47 316-371 117-163 (204)
33 PLN02796 D-glycerate 3-kinase 24.6 1.3E+02 0.0029 31.8 5.3 41 243-286 280-320 (347)
34 KOG4196 bZIP transcription fac 24.3 2.2E+02 0.0047 26.7 5.9 31 167-197 51-81 (135)
35 COG4985 ABC-type phosphate tra 24.0 2.1E+02 0.0045 29.4 6.2 65 175-247 215-287 (289)
36 COG3130 Rmf Ribosome modulatio 23.8 19 0.00042 28.5 -0.7 15 305-319 33-47 (55)
37 PTZ00446 vacuolar sorting prot 23.5 1.9E+02 0.004 28.3 5.7 37 174-210 61-98 (191)
38 PHA02938 hypothetical protein; 22.8 2.6E+02 0.0056 29.5 6.8 100 167-304 110-212 (361)
39 PF09036 Bcr-Abl_Oligo: Bcr-Ab 22.0 1.1E+02 0.0023 26.2 3.2 36 185-220 24-60 (79)
40 PF07889 DUF1664: Protein of u 21.9 1.9E+02 0.004 26.6 5.0 20 309-328 21-40 (126)
41 KOG4677 Golgi integral membran 21.8 1.2E+03 0.025 26.3 13.0 28 185-214 193-220 (554)
42 PF09789 DUF2353: Uncharacteri 21.8 1E+02 0.0022 32.4 3.7 46 166-211 100-151 (319)
43 PF08655 DASH_Ask1: DASH compl 21.1 2.5E+02 0.0055 23.2 5.2 63 342-413 3-65 (66)
44 PF05837 CENP-H: Centromere pr 21.1 2.2E+02 0.0048 24.9 5.2 19 196-214 54-72 (106)
45 PF06210 DUF1003: Protein of u 20.8 2.5E+02 0.0054 25.0 5.5 38 172-210 53-90 (108)
46 PF14362 DUF4407: Domain of un 20.7 5.5E+02 0.012 25.7 8.6 16 431-446 239-254 (301)
47 PRK14563 ribosome modulation f 20.6 38 0.00083 27.1 0.3 16 303-319 32-47 (55)
48 KOG1241 Karyopherin (importin) 20.4 1.5E+03 0.032 27.1 12.6 122 267-393 589-713 (859)
49 COG4240 Predicted kinase [Gene 20.2 2.7E+02 0.0058 28.9 6.2 48 243-293 232-279 (300)
50 PF13334 DUF4094: Domain of un 20.0 1E+02 0.0022 26.8 2.9 21 192-215 75-95 (95)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=8.8e-34 Score=234.00 Aligned_cols=79 Identities=66% Similarity=1.125 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhhcCCCchHHHHHHHhh
Q 045786 250 KQINELRSAVNSHA-SDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQ 328 (453)
Q Consensus 250 r~l~ELR~AL~s~~-~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWIGGfRPSellkLL~~q 328 (453)
|++.|||+|+++|. +|.+|+.||+++|+||++||++|+.||++|||++|+|+|+||+|||||||||||||++||||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 47899999999998 89999999999999999999999999999999999999999999999999999999999999874
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.53 E-value=2.2e-07 Score=73.30 Aligned_cols=41 Identities=56% Similarity=0.702 Sum_probs=34.9
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 210 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~ 210 (453)
|+|-.||+.+||+||++||.|||.|++.||. ++.+|+.+-.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~ 43 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENE 43 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6788999999999999999999999999999 5555555444
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.44 E-value=4e-07 Score=71.71 Aligned_cols=43 Identities=49% Similarity=0.706 Sum_probs=35.9
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045786 168 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRAR 213 (453)
Q Consensus 168 ~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar 213 (453)
.|-.+|+.+||+|||+||.|||.|+++||. ++..|+.+...-+
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~ 46 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK 46 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence 466899999999999999999999999999 7777776655433
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.39 E-value=8.6e-07 Score=68.04 Aligned_cols=44 Identities=45% Similarity=0.592 Sum_probs=37.0
Q ss_pred hcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045786 166 LDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRAR 213 (453)
Q Consensus 166 ~~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar 213 (453)
.+++..||. .||+||++||.|||.|++.||. ++.+|+.|.+.-+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~ 45 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLR 45 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467889999 9999999999999999999999 6666666655444
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.29 E-value=0.00035 Score=70.71 Aligned_cols=38 Identities=47% Similarity=0.636 Sum_probs=33.1
Q ss_pred hcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045786 166 LDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLE 206 (453)
Q Consensus 166 ~~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qle 206 (453)
..-|-.=||-.||||||.+|-.||-||.-||+ |++=||
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence 34567779999999999999999999999999 776666
No 6
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.78 E-value=0.056 Score=44.86 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHHhHH
Q 045786 330 EPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNL 409 (453)
Q Consensus 330 epLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qAD~L 409 (453)
-+||++|...|..+......+-..+-+.+......+.+.+....+ | ...+. ..++.+...-.+....
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~------D----~~~i~---a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPP------D----EAAIE---ALLEEIREAQAELRQE 106 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-----------HHHHH---HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------C----HHHHH---HHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999988874322 1 12333 3334555666677789
Q ss_pred HHHHHHHHHHhcChHHHH
Q 045786 410 RQQTLQQMHRILTTRQSA 427 (453)
Q Consensus 410 R~qTL~qm~~ILTprQAA 427 (453)
|.+++.++..+|||.|=+
T Consensus 107 ~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 107 RLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHcCCHHHhC
Confidence 999999999999999865
No 7
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.03 Score=52.51 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=71.9
Q ss_pred hhhHHhhhhcCCCchH---HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 045786 305 PAERCFMWLGGFRSSE---LLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGN 381 (453)
Q Consensus 305 plER~FLWIGGfRPSe---llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~ 381 (453)
|+... +|.|+|-|=- .++.| +||++|..+|..+.+.-+ .++.+-+..-...+-+.+.++....
T Consensus 34 ~~~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~----- 99 (160)
T COG3678 34 PMADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE----- 99 (160)
T ss_pred Ccccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH-----
Confidence 44444 6888776643 23333 799999999988877766 4444444444455555554332211
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 045786 382 VANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIH 434 (453)
Q Consensus 382 va~~m~qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ 434 (453)
+.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.+
T Consensus 100 --------aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~ 144 (160)
T COG3678 100 --------AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLA 144 (160)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 122255567888889999999999999999999999977644333
No 8
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=95.86 E-value=0.014 Score=63.55 Aligned_cols=45 Identities=40% Similarity=0.529 Sum_probs=37.9
Q ss_pred hhcHHHH---HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 165 KLDQKTL---RRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRA 212 (453)
Q Consensus 165 ~~~~k~~---rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~ra 212 (453)
+.|+|++ .|+..|||.|--||.|||-|++-||. +|..|++|-+.-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~L 321 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQL 321 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3466654 58999999999999999999999999 888888887643
No 9
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=95.85 E-value=0.32 Score=45.84 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=58.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHH
Q 045786 327 NQLEPLTEQQLVGIGNLQQSSQQAEDA--------LSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGT 398 (453)
Q Consensus 327 ~qLepLTeqQL~~I~~LqqstqqaEdA--------LSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~ 398 (453)
..| +||++|...|..++...+.+=.+ .-..|....+.+.+.+.++.+ |.+ .+....++
T Consensus 49 ~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~F------Dea----avral~~~--- 114 (170)
T PRK12750 49 RQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDF------DEA----AANDLAKQ--- 114 (170)
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCC------CHH----HHHHHHHH---
Confidence 456 79999999999988777664333 455566666666666654322 211 11111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 045786 399 LEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDY 436 (453)
Q Consensus 399 Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey 436 (453)
+..--.+.---|.++.++++.||||-|=+.|---..+.
T Consensus 115 ~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r 152 (170)
T PRK12750 115 MVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQER 152 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 11111122224677899999999999999987665444
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.54 E-value=0.015 Score=49.26 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=29.6
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR 199 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr 199 (453)
.=|-.||..+||.||++||.||+.++..||...
T Consensus 28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~ 60 (92)
T PF03131_consen 28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEI 60 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337789999999999999999999999999844
No 11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=93.81 E-value=0.055 Score=58.11 Aligned_cols=45 Identities=40% Similarity=0.507 Sum_probs=34.1
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 211 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~r 211 (453)
+=|..||...|.+.|.-||-|||-||..||.-...-+.=+|||++
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~k 293 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQK 293 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHH
Confidence 346679999999999999999999999999943333333444443
No 12
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=90.62 E-value=0.36 Score=48.83 Aligned_cols=29 Identities=45% Similarity=0.504 Sum_probs=24.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 045786 169 KTLRRLAQNREAARKSRLRKKAYVQQLES 197 (453)
Q Consensus 169 k~~rrLaqNREaArksRlRkKaYvqqLE~ 197 (453)
|..|+=+.|||||+|||.||=--|.+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566678999999999999888888877
No 13
>PRK10455 periplasmic protein; Reviewed
Probab=90.43 E-value=3.2 Score=38.93 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=57.3
Q ss_pred HHhhhhcC---CCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCChh
Q 045786 308 RCFMWLGG---FRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALS-QGMEALQQSLAETLSSGSLGSSGSGNVA 383 (453)
Q Consensus 308 R~FLWIGG---fRPSellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALS-qgMa~LQqsLAD~la~g~lg~~g~g~va 383 (453)
.+.+|-|| ..+..+| ..| +||++|...|..|.+..+..-...+ ++.+.++ +.+.++. .+-+
T Consensus 35 ~~~~~~~~~~g~~~~~m~----~~L-~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~------FDea 99 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMMF----KGL-NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDT------FDKA 99 (161)
T ss_pred CccccCCCCCCchhhhhh----hhC-CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCc------cCHH
Confidence 34577653 3344333 345 7999999999988777665533222 2333333 2233221 1111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHH
Q 045786 384 NYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALL 431 (453)
Q Consensus 384 ~~m~qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLl 431 (453)
.+...++++. ..-.+.-..|.++-.+|..||||-|-+.|=-
T Consensus 100 ----avra~~~k~~---~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 100 ----KAEAQITKME---AQRKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred ----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1222223332 2223333368889999999999999997753
No 14
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=89.92 E-value=7.2 Score=36.85 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=62.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHH
Q 045786 328 QLEPLTEQQLVGIGNLQQSSQQAEDAL-SQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQA 406 (453)
Q Consensus 328 qLepLTeqQL~~I~~LqqstqqaEdAL-SqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qA 406 (453)
.| +||++|...|-.+.+..+...... -..++ .+-+.+.++.+ |.+ .+...+++.. ..-..-
T Consensus 54 ~l-~LTd~QR~qmr~im~~~r~~~~~~~~~~~~----~m~~Li~Ad~F------Dea----Avra~~~kma---~~~~e~ 115 (162)
T PRK12751 54 GI-NLTEQQRQQMRDLMRQSHQSQPRLDLEDRE----AMHKLITADKF------DEA----AVRAQAEKMS---QNQIER 115 (162)
T ss_pred cC-CCCHHHHHHHHHHHHHhhhcccchhHHHHH----HHHHHHhcCCC------CHH----HHHHHHHHHH---HHHHHH
Confidence 44 799999999988887777653211 11222 33334433322 221 2222223322 222222
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhccc
Q 045786 407 DNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSL 446 (453)
Q Consensus 407 D~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RLRaLssl 446 (453)
--.+.++.++|+.+|||-|-+.|=--.-+-...+|.+..+
T Consensus 116 ~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 116 HVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2357788899999999999999988888888888886643
No 15
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=89.19 E-value=6.4 Score=37.57 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=58.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHH--HHHHHHH
Q 045786 328 QLEPLTEQQLVGIGNLQQSSQQAEDALS-QGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLG--TLEGFIR 404 (453)
Q Consensus 328 qLepLTeqQL~~I~~LqqstqqaEdALS-qgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~--~Le~fl~ 404 (453)
.| +||++|...|..|.+.-+.+...++ .++++++ +.+.++. .|-+ .+....+|+. ..+.-|
T Consensus 48 gL-dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~------FDEa----avra~a~kma~~~~e~~V- 111 (166)
T PRK10363 48 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAEN------FDEN----AVRAQAEKMAQEQVARQV- 111 (166)
T ss_pred CC-CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCC------CCHH----HHHHHHHHHHHHHHHHHH-
Confidence 44 7999999999999988876644443 2344444 2333222 2221 1222223332 122222
Q ss_pred HHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcc
Q 045786 405 QADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSS 445 (453)
Q Consensus 405 qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RLRaLss 445 (453)
-|.++-++|..||||-|-+.|=--.-+....+|.++.
T Consensus 112 ----em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~ 148 (166)
T PRK10363 112 ----EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQ 148 (166)
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888999999999999996555555556666553
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=86.24 E-value=4 Score=33.29 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=44.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHHh
Q 045786 328 QLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQAD 407 (453)
Q Consensus 328 qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qAD 407 (453)
.| +||++|...|..+....+..-..+....+.+...-. . ..+.. .. .++.+.+.+...-.+.-
T Consensus 12 ~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~-~~----~~~~~~~~~~~~~~~~~ 74 (100)
T PF07813_consen 12 EL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD---P--------SFDEA-AP----EALAAMAEMMELRAEMM 74 (100)
T ss_dssp TS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH---S--------S--HH-HH----HHHH--HHCHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc---c--------cCChh-HH----HHHHHHHHHHHHHHHHH
Confidence 44 599999999999999887777766222222211111 0 01100 01 11122233444445555
Q ss_pred HHHHHHHHHHHHhcChHHHHHH
Q 045786 408 NLRQQTLQQMHRILTTRQSARA 429 (453)
Q Consensus 408 ~LR~qTL~qm~~ILTprQAArf 429 (453)
..|..+...+..||||-|=+.|
T Consensus 75 ~~~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 75 EERAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHH
Confidence 6678899999999999998776
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.39 E-value=2.3 Score=42.86 Aligned_cols=40 Identities=38% Similarity=0.508 Sum_probs=33.1
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 209 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel 209 (453)
..|++||=-.||=||..+|=||||-...+|- ....|+.|-
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een 106 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEEN 106 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHH
Confidence 6799999999999999999999999999887 344444443
No 18
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=75.87 E-value=6 Score=39.85 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=21.6
Q ss_pred hhcHHHHHHHHhhHHHHHHhhhhHHH
Q 045786 165 KLDQKTLRRLAQNREAARKSRLRKKA 190 (453)
Q Consensus 165 ~~~~k~~rrLaqNREaArksRlRkKa 190 (453)
+.+++-..|...|=+|+||||...|.
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~ 215 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQ 215 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHH
Confidence 34778888999999999999987664
No 19
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=65.71 E-value=17 Score=37.56 Aligned_cols=50 Identities=32% Similarity=0.413 Sum_probs=37.6
Q ss_pred hhcHHHHHHHHhhHHH-HHHhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhh
Q 045786 165 KLDQKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRARQ 214 (453)
Q Consensus 165 ~~~~k~~rrLaqNREa-ArksRlRkKaYvqqLE~s-----------r~kL~qleqel~rar~ 214 (453)
+.+.|++||-+|+|.+ |-+=|-||||=-+.||.. |.++..||.|++.-||
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888887777665 888899999999888753 3456677888887776
No 20
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=61.66 E-value=77 Score=32.89 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 045786 267 ELRMVVDGIMAHYDEIFRLKANAA 290 (453)
Q Consensus 267 eLr~LVd~vlsHY~eyfr~Ks~AA 290 (453)
=|+..|+.-|.-|.+-|+.-..+-
T Consensus 236 CL~dFVeaQmtyYAQcyq~MlDLQ 259 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLMLDLQ 259 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988754443
No 21
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=51.06 E-value=1.8e+02 Score=25.78 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHhhcceeec-cCCCCCC-----CCCCchhhhHHHHHHHHHHHHHHH-HHHHH
Q 045786 185 RLRKKAYVQQLESSRLKLTQLEQELQ-RARQQGIFIS-SSGDQAH-----SMSGNGAMAFDVEYARWLEEQNKQ-INELR 256 (453)
Q Consensus 185 RlRkKaYvqqLE~sr~kL~qleqel~-rar~Qg~~~~-~~~~~~~-----~~~~~ga~~F~~eY~rWleEq~r~-l~ELR 256 (453)
.-.=|+|-+.+.+ --.++.++|. -|.+.|+-+. ......+ .+.......||..|-..+..-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~---dh~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVE---DHTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455799999988 4555566664 4567787776 2211111 011112489999998887666555 55556
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHH
Q 045786 257 SAVNSHASDTELRMVVDGIMAHYDEIFR 284 (453)
Q Consensus 257 ~AL~s~~~D~eLr~LVd~vlsHY~eyfr 284 (453)
...-....|.+|+.++...+.-...+..
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~hl~ 134 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEAHLE 134 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHHHHH
Confidence 6355566788999988887765555443
No 22
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=38.60 E-value=1.2e+02 Score=33.77 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=66.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045786 183 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRSAVNSH 262 (453)
Q Consensus 183 ksRlRkKaYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWleEq~r~l~ELR~AL~s~ 262 (453)
|-+=|.|-.|+||-+ .|..||+- .|-.+. |..... --++.|+-.+.|||+-++-+
T Consensus 142 kq~e~qkeLi~QLk~---Ql~dLE~~--------AYe~Ge----------g~LPq~----viLekQk~ilDeLr~Kl~ln 196 (621)
T KOG3759|consen 142 KQNERQKELIKQLKE---QLEDLERT--------AYENGE----------GELPQT----VILEKQKAILDELREKLELN 196 (621)
T ss_pred hhcchHHHHHHHHHH---HHHHHHHH--------HHhcCC----------CcCchH----HHHHHHHHHHHHHHHHhhcc
Confidence 344577888999988 77777732 232221 122221 34678888899999998644
Q ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhh
Q 045786 263 -----ASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWL 313 (453)
Q Consensus 263 -----~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWI 313 (453)
.+-.|||.-||.++..+-.-|++|.-+-..=- +=.|-+||+.-+|
T Consensus 197 l~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLk------TQItDLErFInFl 246 (621)
T KOG3759|consen 197 LDIDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLK------TQITDLERFINFL 246 (621)
T ss_pred CCcccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 34679999999999999999999985422110 1135677775544
No 23
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.08 E-value=2.2e+02 Score=30.53 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 340 IGNLQQSSQQAEDALSQGMEALQQS 364 (453)
Q Consensus 340 I~~LqqstqqaEdALSqgMa~LQqs 364 (453)
|..-+++...+++.|.++|..||..
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3444677788888888888888764
No 24
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=33.84 E-value=2.2e+02 Score=21.79 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 190 AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRS 257 (453)
Q Consensus 190 aYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWleEq~r~l~ELR~ 257 (453)
.+...|++ .+.+|+..++.. ++-+-| .++.+|...|..|-....+....|..
T Consensus 18 ~~~~~l~~---~~~~l~~~~~~l--~~~W~G-----------~a~~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 18 AQADELQS---QLQQLESSIDSL--QASWQG-----------EAADAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH--GGGBTS-----------STSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHH--hhhCCc-----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 666777666665 222222 34799999999999888877766643
No 25
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=32.96 E-value=98 Score=25.77 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 045786 397 GTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYF 437 (453)
Q Consensus 397 ~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~ 437 (453)
+....++...-+||-+.|+++.+--+-.++.|.++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 34557777888899999999999999999999999999874
No 26
>PRK11702 hypothetical protein; Provisional
Probab=31.05 E-value=22 Score=31.83 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=11.0
Q ss_pred HHhhhhHHHHHHH
Q 045786 182 RKSRLRKKAYVQQ 194 (453)
Q Consensus 182 rksRlRkKaYvqq 194 (453)
|+.|||||-||-.
T Consensus 5 RsRRlRKKL~v~E 17 (108)
T PRK11702 5 RSRRLRKKMHIDE 17 (108)
T ss_pred hhHHHHhhhhhHh
Confidence 6889999999854
No 27
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=29.37 E-value=5.4e+02 Score=25.06 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q 045786 191 YVQQLESSRLKLTQLEQELQ-RARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELR 269 (453)
Q Consensus 191 YvqqLE~sr~kL~qleqel~-rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr 269 (453)
-+|.||+ ||+||-|--. -+|.++++.-- | .+.++.||- .| .-.++|-+..+..|+.++.+..- ....
T Consensus 6 Llq~Le~---~l~~L~q~~ap~a~~~~l~aRF--d-~~LFs~~g~-~l----s~ylqEa~~tL~aL~~~~e~~~l-~q~a 73 (175)
T COG3923 6 LLQKLEQ---QLAQLRQRCAPVAREATLSARF--D-RHLFSENGQ-LL----SFYLQEAGQTLTALKQAVEQDRL-PQVA 73 (175)
T ss_pred HHHHHHH---HHHHHHHHhhhhhccccHHHhh--h-HHHHhhcCc-hH----HHHHHHHHHHHHHHHHHHhccch-HHHH
Confidence 4788888 9999988765 67777765431 1 123333332 22 24689999999999999866532 2466
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045786 270 MVVDGIMAHYDEIFRLKA 287 (453)
Q Consensus 270 ~LVd~vlsHY~eyfr~Ks 287 (453)
-|-++.++.|..+-+.-+
T Consensus 74 fLAErLlAQi~Al~relt 91 (175)
T COG3923 74 FLAERLLAQIEALSRELT 91 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999998887654
No 28
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=27.82 E-value=62 Score=29.60 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=35.4
Q ss_pred hhhhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 045786 310 FMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQ-AEDALSQGMEAL 361 (453)
Q Consensus 310 FLWIGGfRPSellkLL~~qLepLTeqQL~~I~~Lqqstqq-aEdALSqgMa~L 361 (453)
+.|+ |.+|+++.++-.....|||+..+..+.+|..+..- .+..+..++...
T Consensus 90 l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~~~~~~~~~~el~~m 141 (160)
T cd00223 90 LRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPRFKELPEWKRELQLM 141 (160)
T ss_pred cEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccccccCHHHHHHHHHH
Confidence 6676 58899988744556789999999999998887543 233344444433
No 29
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=26.53 E-value=5.6e+02 Score=26.43 Aligned_cols=100 Identities=25% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHhhHHHHHHhhhhHHHHH----HHHHHHHHHHHHH------------HHHHHHHhhcceeeccCCCCCCCCCCchhh
Q 045786 172 RRLAQNREAARKSRLRKKAYV----QQLESSRLKLTQL------------EQELQRARQQGIFISSSGDQAHSMSGNGAM 235 (453)
Q Consensus 172 rrLaqNREaArksRlRkKaYv----qqLE~sr~kL~ql------------eqel~rar~Qg~~~~~~~~~~~~~~~~ga~ 235 (453)
++|-.|=..++||--|.+... -|-|++|-|+..+ |++-+++|.|-+++.. .
T Consensus 75 ~~Lq~~~k~di~~~e~~~ihl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P-------------~ 141 (280)
T COG5074 75 TDLQRNLKKDIKSAERDGIHLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQP-------------E 141 (280)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCC-------------c
Confidence 445556666777776666554 4667777766543 7888999998776642 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 045786 236 AFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRL 285 (453)
Q Consensus 236 ~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~ 285 (453)
+=+++++..+.+-+.+---=.++|+++.. .|-+..+..+-+.+.++-+.
T Consensus 142 ATEdeve~aInd~nG~qvfsqalL~anr~-geAktaL~Evq~Rh~~ikki 190 (280)
T COG5074 142 ATEDEVEAAINDVNGQQVFSQALLNANRR-GEAKTALAEVQARHQEIKKI 190 (280)
T ss_pred cchHHHHHHhcccchHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHH
Confidence 22444444444444322112344566642 34555555666666666554
No 30
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=26.30 E-value=4.5e+02 Score=23.06 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhhcCCCchHHHHH
Q 045786 270 MVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKL 324 (453)
Q Consensus 270 ~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWIGGfRPSellkL 324 (453)
.+-..+-..+..+|.+.+ -.|.. +.=+|.++-+|-+|+|+..++.
T Consensus 69 k~f~~i~~~lk~~F~V~s---Y~~I~-------~kdfd~A~~~I~~W~p~~~l~~ 113 (116)
T PF10552_consen 69 KLFSDIYRDLKRHFGVPS---YKDIP-------RKDFDEALEFINNWEPSTALKM 113 (116)
T ss_pred HHHHHHHHHHHHHhCCch---HHhhh-------HHHHHHHHHHHHHcCCCHHHHH
Confidence 466666666777776643 11111 1447899999999999987753
No 31
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.23 E-value=60 Score=26.09 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 045786 201 KLTQLEQELQRAR 213 (453)
Q Consensus 201 kL~qleqel~rar 213 (453)
+|.+.||+++.+.
T Consensus 40 rL~~ae~ra~~ae 52 (60)
T PF11471_consen 40 RLQAAEQRAQAAE 52 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 32
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=4.1e+02 Score=26.51 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=31.3
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 045786 316 FRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSS 371 (453)
Q Consensus 316 fRPSellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~ 371 (453)
|.|.+.|- +-++|+-.+++.+. .+..-..+.+++.++|+.+|+.+..
T Consensus 117 ~D~ae~Ls---r~~Gdv~A~~~~~~------l~~~~~~l~~~~~~~q~~~Ae~iTE 163 (204)
T COG3165 117 PDPAELLS---RYFGDVAAQSVVRA------LRSGSRFLKHGLKQLQRNLAEAITE 163 (204)
T ss_pred CCHHHHHH---HHhcchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555443 44556556665443 4444556899999999999999863
No 33
>PLN02796 D-glycerate 3-kinase
Probab=24.59 E-value=1.3e+02 Score=31.80 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Q 045786 243 RWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLK 286 (453)
Q Consensus 243 rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~K 286 (453)
+|..+|++.|. +.-...++|+++...|+.+|=-|..|+..-
T Consensus 280 ~WR~qQE~~l~---~~~~~gMsde~v~~FV~~~mP~y~~y~~~l 320 (347)
T PLN02796 280 EWRLQAEIAMR---AKGKPGMSDEEVADFVSRYMPAYKAYLPGL 320 (347)
T ss_pred HHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999997654 444456899999999999999999998754
No 34
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.33 E-value=2.2e+02 Score=26.68 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=23.2
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLES 197 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~ 197 (453)
.-|-.||--.||-=|-.+|.++=---.+||.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~ 81 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEK 81 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4577799999999999999875444445665
No 35
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=24.02 E-value=2.1e+02 Score=29.44 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=43.6
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCC--------CchhhhHHHHHHHHHH
Q 045786 175 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMS--------GNGAMAFDVEYARWLE 246 (453)
Q Consensus 175 aqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~--------~~ga~~F~~eY~rWle 246 (453)
+|-|=+|.||+|-| -.++|++ +|.-|.+|++| |-+|+-.-....++.. -+.++.|-...+.|..
T Consensus 215 ~q~~~~ae~seLq~--r~~~l~~---~L~~L~~e~~r---~~l~~~Dm~G~~~~vpLsei~~awyPNdM~fgqKl~~~~k 286 (289)
T COG4985 215 FQQHYVAEKSELQK--RLAQLQT---ELDALRAELER---QFLYLVDMQGETVSVPLSEILDAWYPNDMNFGQKLAEWGK 286 (289)
T ss_pred HHHHHHHHHHHHHH--HHHHHHH---HHHHHhhhhhh---ceEEEEccCCCEeeccHHHHHHhhCcCcchHHHHHHHHHh
Confidence 35666799999984 4688888 99999999987 6777754333332221 1136777777777765
Q ss_pred H
Q 045786 247 E 247 (453)
Q Consensus 247 E 247 (453)
.
T Consensus 287 ~ 287 (289)
T COG4985 287 Q 287 (289)
T ss_pred h
Confidence 3
No 36
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=23.81 E-value=19 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.807 Sum_probs=9.7
Q ss_pred hhhHHhhhhcCCCch
Q 045786 305 PAERCFMWLGGFRSS 319 (453)
Q Consensus 305 plER~FLWIGGfRPS 319 (453)
.++.--.|+||||--
T Consensus 33 ~~~~Rs~WLgGWRea 47 (55)
T COG3130 33 TLNQRSQWLGGWREA 47 (55)
T ss_pred CchHHHHHHHHHHHH
Confidence 344445788888854
No 37
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=23.47 E-value=1.9e+02 Score=28.32 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHhhHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 174 LAQNRE-AARKSRLRKKAYVQQLESSRLKLTQLEQELQ 210 (453)
Q Consensus 174 LaqNRE-aArksRlRkKaYvqqLE~sr~kL~qleqel~ 210 (453)
+.+|+- +|...=.|||.|-+||+..-..+..|||-+-
T Consensus 61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445543 6666667888999999999888998887654
No 38
>PHA02938 hypothetical protein; Provisional
Probab=22.79 E-value=2.6e+02 Score=29.51 Aligned_cols=100 Identities=25% Similarity=0.447 Sum_probs=56.8
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLE 246 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWle 246 (453)
-+|..|||+.+| |..|-+..-.|.||+ +. +-|.+.+. ..+| +.++
T Consensus 110 i~ke~~rl~e~r----k~kld~e~~~qlle~---------------------ia-sk~p~~~v----~~sF-----kCvd 154 (361)
T PHA02938 110 IDKEKRRLSEKR----KRKLDEERLTQLLEA---------------------IA-SKDPSAPV----SASF-----KCVD 154 (361)
T ss_pred hhHHHHHHHHHh----hccccHHHHHHHHHH---------------------Hh-ccCCCCcc----ceee-----ecch
Confidence 789999999876 444555555566665 11 11222111 3567 5556
Q ss_pred HHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHH-HHhhhhh-chhhhccCCCCC
Q 045786 247 EQNKQINELRSAVNSHAS-DTELRMVVDGIMAHYDEIFRL-KANAAKA-DVFHLLSGMWKT 304 (453)
Q Consensus 247 Eq~r~l~ELR~AL~s~~~-D~eLr~LVd~vlsHY~eyfr~-Ks~AAk~-DVf~llSg~W~T 304 (453)
..++.+.+ .|...... -+-.+.-|+.++.||.++|.. |...-.+ |.|+ .-+.|+.
T Consensus 155 dLhklL~k--Ea~~rgtT~seLVrrAIeefLqkYG~n~eeIKkL~E~akdl~y-~~~g~kv 212 (361)
T PHA02938 155 DLHKLLEK--EAIKRGTTASELVRRAIEEFLKKYGNNYEEIKKLYETAKDLFY-EKGPWKG 212 (361)
T ss_pred HHHHHHHH--HHHHcCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhhcc-cccCCce
Confidence 66655543 22222323 234788999999999988876 4433333 4443 4455554
No 39
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=22.05 E-value=1.1e+02 Score=26.16 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=25.2
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcceeec
Q 045786 185 RLRKKAYV-QQLESSRLKLTQLEQELQRARQQGIFIS 220 (453)
Q Consensus 185 RlRkKaYv-qqLE~sr~kL~qleqel~rar~Qg~~~~ 220 (453)
+||---++ |.||.++..+..||||+.+-|=--||+.
T Consensus 24 ~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQ 60 (79)
T PF09036_consen 24 ELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQ 60 (79)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444 6799999999999999987765556654
No 40
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.86 E-value=1.9e+02 Score=26.61 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=14.1
Q ss_pred HhhhhcCCCchHHHHHHHhh
Q 045786 309 CFMWLGGFRSSELLKLLVNQ 328 (453)
Q Consensus 309 ~FLWIGGfRPSellkLL~~q 328 (453)
+++|.=||.=|.+.=+-...
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~ 40 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRS 40 (126)
T ss_pred eeeeecCCchhHHHHHHHHh
Confidence 58999999888766443333
No 41
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=21.76 E-value=1.2e+03 Score=26.33 Aligned_cols=28 Identities=39% Similarity=0.432 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045786 185 RLRKKAYVQQLESSRLKLTQLEQELQRARQ 214 (453)
Q Consensus 185 RlRkKaYvqqLE~sr~kL~qleqel~rar~ 214 (453)
||+|+. |+.||-+ --|..|.++|+-|++
T Consensus 193 ~ll~~R-ve~le~~-Sal~~lq~~L~la~~ 220 (554)
T KOG4677|consen 193 RLLKGR-VESLERF-SALRSLQDKLQLAEE 220 (554)
T ss_pred HHHHhh-hHHHHHH-HHHHHHHHHHHHHHH
Confidence 455543 6777766 366778888887775
No 42
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.76 E-value=1e+02 Score=32.43 Aligned_cols=46 Identities=37% Similarity=0.437 Sum_probs=33.6
Q ss_pred hcHHHHHH-HHhhHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 166 LDQKTLRR-LAQNREAARKS-----RLRKKAYVQQLESSRLKLTQLEQELQR 211 (453)
Q Consensus 166 ~~~k~~rr-LaqNREaArks-----RlRkKaYvqqLE~sr~kL~qleqel~r 211 (453)
.|-|.+|. +|+.|-..... -=.|..||.|||..+-|..|||.+++.
T Consensus 100 GD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 100 GDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred chHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677776 66655332222 235679999999999999999999984
No 43
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.12 E-value=2.5e+02 Score=23.22 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045786 342 NLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQT 413 (453)
Q Consensus 342 ~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qAD~LR~qT 413 (453)
+|.|.+-..=..++.-+.+.+.-+.+.+. +.|..|....+..++..+=+..|+.+|-++++.+
T Consensus 3 ~ldQ~iTl~LQeID~N~s~~~~iit~~Il---------P~v~rY~~~s~~i~~~~~fwk~fFe~sAnV~L~~ 65 (66)
T PF08655_consen 3 QLDQEITLLLQEIDSNFSRCHRIITDKIL---------PAVERYGESSEKIWDSAKFWKQFFEQSANVRLST 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccC
Confidence 34444444444566677777766666654 2355676667777777778999999998887654
No 44
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.08 E-value=2.2e+02 Score=24.86 Aligned_cols=19 Identities=47% Similarity=0.644 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 045786 196 ESSRLKLTQLEQELQRARQ 214 (453)
Q Consensus 196 E~sr~kL~qleqel~rar~ 214 (453)
+..+.+|..++.+++..|+
T Consensus 54 ~~~~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 54 EELSEKLEKLEKELKKSRQ 72 (106)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445677777777776665
No 45
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.79 E-value=2.5e+02 Score=24.98 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 172 RRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 210 (453)
Q Consensus 172 rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~ 210 (453)
==++|||-++| .|+|-+-=.|-=+-+......|-++|+
T Consensus 53 IlmsQNRq~~~-dr~ra~~D~~inl~ae~ei~~l~~~l~ 90 (108)
T PF06210_consen 53 ILMSQNRQAAR-DRLRAELDYQINLKAEQEIERLHRKLD 90 (108)
T ss_pred HHHHhhHhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34679998877 566655433333333444444444444
No 46
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.72 E-value=5.5e+02 Score=25.70 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhccc
Q 045786 431 LAIHDYFSRLRALSSL 446 (453)
Q Consensus 431 lAl~ey~~RLRaLssl 446 (453)
-+..++..|+.+|..|
T Consensus 239 ~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 239 SANDGFLARLEALWEL 254 (301)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4455566666666554
No 47
>PRK14563 ribosome modulation factor; Provisional
Probab=20.60 E-value=38 Score=27.14 Aligned_cols=16 Identities=44% Similarity=0.962 Sum_probs=10.5
Q ss_pred CChhhHHhhhhcCCCch
Q 045786 303 KTPAERCFMWLGGFRSS 319 (453)
Q Consensus 303 ~TplER~FLWIGGfRPS 319 (453)
.++.-|. .||||||--
T Consensus 32 ~~~~~r~-~Wl~GWReg 47 (55)
T PRK14563 32 QTLDARS-QWLGGWREA 47 (55)
T ss_pred CCcHHHH-HHHHHHHHH
Confidence 3444455 899999853
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.36 E-value=1.5e+03 Score=27.10 Aligned_cols=122 Identities=21% Similarity=0.332 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhhhchhhhccCCCCChhhHHhhhhcCCCchHHHHHHHhhcCCChHHHH--HHHHHH
Q 045786 267 ELRMVVDGIMAHYDEIFRL-KANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQL--VGIGNL 343 (453)
Q Consensus 267 eLr~LVd~vlsHY~eyfr~-Ks~AAk~DVf~llSg~W~TplER~FLWIGGfRPSellkLL~~qLepLTeqQL--~~I~~L 343 (453)
+.+..+|.+|.-+-..|+- |+.+.++|+|.-++-.=.+-=+++--.+--|.|. |...|..-+|-|+ ..|.=.
T Consensus 589 ~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~py-----L~~gL~n~~e~qVc~~aVglV 663 (859)
T KOG1241|consen 589 DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPY-----LLMGLSNFQEYQVCAAAVGLV 663 (859)
T ss_pred cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHH-----HHHHhhcchHHHHHHHHHHHH
Confidence 6888999999999999998 7788999999877644333333455566667776 3345556677775 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHH
Q 045786 344 QQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAM 393 (453)
Q Consensus 344 qqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am 393 (453)
-.=++-.|+.+---+..+=..|+.-+.+..+-+.-...+-.+.|.++.|+
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHH
Confidence 44566667777666666655566555432211111122223456677776
No 49
>COG4240 Predicted kinase [General function prediction only]
Probab=20.17 E-value=2.7e+02 Score=28.88 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 045786 243 RWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKAD 293 (453)
Q Consensus 243 rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~D 293 (453)
.|.-+|+ .+|++++...++|++....|+..|-.|.-|+.--+..+.-|
T Consensus 232 ~WRlQqE---hkliAr~~kgmsdeqv~efvn~ymrsl~lylq~ls~~~al~ 279 (300)
T COG4240 232 AWRLQQE---HKLIARLAKGMSDEQVSEFVNAYMRSLELYLQRLSEWIALD 279 (300)
T ss_pred HHHHHHH---HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6887766 46788888999999999999999999988888766655555
No 50
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.01 E-value=1e+02 Score=26.78 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 045786 192 VQQLESSRLKLTQLEQELQRARQQ 215 (453)
Q Consensus 192 vqqLE~sr~kL~qleqel~rar~Q 215 (453)
||-|+. +++.||-||..||.+
T Consensus 75 Iq~LdK---tIS~LEMELAaARa~ 95 (95)
T PF13334_consen 75 IQSLDK---TISSLEMELAAARAE 95 (95)
T ss_pred HHHHHH---HHHHHHHHHHHHhcC
Confidence 778888 999999999999974
Done!