Query 045786
Match_columns 453
No_of_seqs 185 out of 248
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.9 1.9E-09 6.4E-14 82.8 5.8 43 170-215 2-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.4 2.2E-07 7.5E-12 73.0 5.4 40 166-208 6-45 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.1 3.1E-06 1E-10 65.8 5.8 37 169-208 1-37 (62)
4 2wt7_A Proto-oncogene protein 98.0 1.1E-05 3.9E-10 62.9 6.8 37 169-208 2-38 (63)
5 1t2k_D Cyclic-AMP-dependent tr 97.9 1.3E-05 4.6E-10 61.9 6.0 36 170-208 2-37 (61)
6 1gd2_E Transcription factor PA 97.9 1.1E-05 3.7E-10 64.9 4.6 39 170-211 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.3 0.0039 1.3E-07 54.7 13.4 101 319-436 9-112 (118)
8 1ci6_A Transcription factor AT 96.4 0.0032 1.1E-07 49.2 4.6 37 169-208 2-38 (63)
9 1gu4_A CAAT/enhancer binding p 95.3 0.043 1.5E-06 44.8 6.9 52 163-214 9-71 (78)
10 3a5t_A Transcription factor MA 95.3 0.0051 1.8E-07 53.1 1.4 40 168-210 36-75 (107)
11 1hjb_A Ccaat/enhancer binding 94.5 0.09 3.1E-06 43.8 6.9 35 163-197 9-43 (87)
12 3itf_A Periplasmic adaptor pro 93.8 0.27 9.3E-06 44.1 9.1 99 328-444 43-142 (145)
13 3oeo_A Spheroplast protein Y; 87.0 0.35 1.2E-05 42.6 3.0 100 325-441 28-127 (138)
14 2wt7_B Transcription factor MA 85.9 1.8 6.2E-05 36.3 6.5 33 167-199 25-57 (90)
15 3o39_A Periplasmic protein rel 81.1 1.6 5.6E-05 37.3 4.5 83 331-430 17-100 (108)
16 3lay_A Zinc resistance-associa 79.3 17 0.00058 33.4 11.0 42 330-371 66-107 (175)
17 1skn_P DNA-binding domain of S 74.7 1.4 4.8E-05 37.1 2.2 30 167-196 60-89 (92)
18 2ksd_A Aerobic respiration con 59.8 0.51 1.7E-05 41.3 -3.6 30 191-220 76-105 (115)
19 2ke4_A CDC42-interacting prote 56.8 68 0.0023 26.9 9.0 44 329-373 8-56 (98)
20 2er8_A Regulatory protein Leu3 53.7 7 0.00024 29.6 2.3 23 188-213 47-69 (72)
21 1zme_C Proline utilization tra 52.7 10 0.00034 28.4 3.1 24 188-214 42-65 (70)
22 3he4_B Synzip5; heterodimeric 46.5 24 0.00081 25.6 3.9 27 188-214 8-34 (46)
23 1hwt_C Protein (heme activator 46.2 9.3 0.00032 29.4 2.0 27 183-212 51-77 (81)
24 2kz5_A Transcription factor NF 44.1 4.6 0.00016 34.0 -0.1 21 169-189 66-86 (91)
25 2c9l_Y EB1, zebra, BZLF1 trans 43.5 44 0.0015 25.8 5.3 24 173-199 5-28 (63)
26 4i0x_B ESAT-6-like protein MAB 40.4 88 0.003 25.1 7.1 49 190-252 25-73 (103)
27 1k1f_A Breakpoint cluster regi 34.3 31 0.0011 27.6 3.2 28 193-220 33-60 (72)
28 4abm_A Charged multivesicular 33.7 64 0.0022 26.0 5.1 36 175-210 41-76 (79)
29 3plt_A Sphingolipid long chain 31.9 65 0.0022 31.1 5.7 43 175-217 99-148 (234)
30 1ux5_A BNI1 protein; structura 29.9 4.3E+02 0.015 26.3 13.1 179 234-440 182-391 (411)
31 1pyi_A Protein (pyrimidine pat 29.9 40 0.0014 26.6 3.3 22 189-213 47-68 (96)
32 3coq_A Regulatory protein GAL4 29.8 35 0.0012 26.4 2.9 23 188-213 43-65 (89)
33 1hlo_A Protein (transcription 27.9 36 0.0012 26.8 2.7 24 190-216 57-80 (80)
34 2j1d_G DAAM1, disheveled-assoc 22.5 6.4E+02 0.022 25.8 13.2 177 234-440 181-388 (483)
35 1s16_A Topoisomerase IV subuni 22.5 23 0.00077 36.0 0.7 15 175-189 376-390 (390)
36 3obv_E Protein diaphanous homo 21.1 6.8E+02 0.023 25.6 12.3 176 233-438 169-374 (457)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.89 E-value=1.9e-09 Score=82.76 Aligned_cols=43 Identities=42% Similarity=0.576 Sum_probs=38.4
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045786 170 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 215 (453)
Q Consensus 170 ~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar~Q 215 (453)
-++|++.|||+|+.||.|||+||+.||. ++.+|+.|-...+.|
T Consensus 2 r~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 2 REVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 888898887766643
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.44 E-value=2.2e-07 Score=73.05 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=29.6
Q ss_pred hcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 166 LDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 208 (453)
Q Consensus 166 ~~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqe 208 (453)
++|+..+|-++||||||+||.||++|+..||. ++.+|+.|
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~e 45 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSK 45 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 35566777788999999999999999999999 55555444
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.14 E-value=3.1e-06 Score=65.82 Aligned_cols=37 Identities=41% Similarity=0.482 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 208 (453)
Q Consensus 169 k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqe 208 (453)
|..||..+||+||+|||.|||.|++.||. ++..|+.+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~ 37 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQ 37 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45689999999999999999999999999 55555544
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.01 E-value=1.1e-05 Score=62.90 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=31.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 208 (453)
Q Consensus 169 k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqe 208 (453)
|-.+|+-.||+||+|||.|||.|++.||. +..+|+.+
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~ 38 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDE 38 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 56799999999999999999999999999 55555544
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.94 E-value=1.3e-05 Score=61.92 Aligned_cols=36 Identities=39% Similarity=0.509 Sum_probs=30.5
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 170 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 208 (453)
Q Consensus 170 ~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqe 208 (453)
-.+|+..||+||.|||.|||.|++.||. +...|+.+
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~ 37 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSL 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4689999999999999999999999999 55444444
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.88 E-value=1.1e-05 Score=64.88 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 170 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 211 (453)
Q Consensus 170 ~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~r 211 (453)
..+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688999999999999999999999999 88888865543
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.34 E-value=0.0039 Score=54.68 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=77.7
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHH
Q 045786 319 SELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGT 398 (453)
Q Consensus 319 SellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~ 398 (453)
+.+=.+|...| +||++|...|..+...-.....+|.++|...-.-||+.+.... .|..++..|+.
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~----------~~~p~V~aaid---- 73 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP----------AWSPEVEAATQ---- 73 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------SCCHHHHHHHH----
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ccCHHHHHHHH----
Confidence 33444566777 7999999999999999999999999999999999999986321 13445666654
Q ss_pred HHHHHHHHhHHHHHH---HHHHHHhcChHHHHHHHHHHHHH
Q 045786 399 LEGFIRQADNLRQQT---LQQMHRILTTRQSARALLAIHDY 436 (453)
Q Consensus 399 Le~fl~qAD~LR~qT---L~qm~~ILTprQAArfLlAl~ey 436 (453)
.|-...-.|+..| +-.|..||||-|+++|=-.+.+-
T Consensus 74 --~~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 74 --EVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334555688889 66789999999999997666543
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.43 E-value=0.0032 Score=49.16 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=26.4
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045786 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 208 (453)
Q Consensus 169 k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqe 208 (453)
|-.|+.-+||.||+++|.|||.+++.||. ++.+|+++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~ 38 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKK 38 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34678889999999999999999999999 44444444
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=95.31 E-value=0.043 Score=44.83 Aligned_cols=52 Identities=33% Similarity=0.311 Sum_probs=37.4
Q ss_pred cchhcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH---------HH--HHHHHHHHHHHHHhh
Q 045786 163 KDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRARQ 214 (453)
Q Consensus 163 ~~~~~~k~~rrLaqNREaArksRlRkKaYvqqLE~---------sr--~kL~qleqel~rar~ 214 (453)
.++.|++-..|-..|.+||+|||-.+|.-.+.++. .+ .++.+|+.|+...|+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888899999999999999998888854 22 344555555555554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.28 E-value=0.0051 Score=53.09 Aligned_cols=40 Identities=30% Similarity=0.426 Sum_probs=33.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 168 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 210 (453)
Q Consensus 168 ~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~ 210 (453)
=|-.||--.||++|++||.||.+.+..||. .+.+|.+|++
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e 75 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 377899999999999999999999999997 4455544444
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.51 E-value=0.09 Score=43.75 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=28.2
Q ss_pred cchhcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 045786 163 KDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLES 197 (453)
Q Consensus 163 ~~~~~~k~~rrLaqNREaArksRlRkKaYvqqLE~ 197 (453)
.++.|++-..|-..|.+||||||-.+|.=.++++.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~ 43 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888899999999999999988777754
No 12
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=93.81 E-value=0.27 Score=44.10 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=61.1
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHH
Q 045786 328 QLEPLTEQQLVGIGNLQQSSQQAEDALSQ-GMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQA 406 (453)
Q Consensus 328 qLepLTeqQL~~I~~LqqstqqaEdALSq-gMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qA 406 (453)
.| +||++|..+|..|.+..+.+...+.. .++ .+-+.+.++. .+-+ .+. ..++.+...-.+.
T Consensus 43 ~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~------fDea----a~r---al~~~~~~~~~e~ 104 (145)
T 3itf_A 43 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAEN------FDEN----AVR---AQAEKMANEQIAR 104 (145)
T ss_dssp TC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSS------CCHH----HHH---HHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCC------CCHH----HHH---HHHHHHHHHHHHH
Confidence 44 69999999999999888876554432 222 2333333221 1211 111 2223333444444
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Q 045786 407 DNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALS 444 (453)
Q Consensus 407 D~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RLRaLs 444 (453)
--.|.++-.+|..||||-|-+.|---..+-...++.++
T Consensus 105 ~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 105 QVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788899999999999999998876666555555544
No 13
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=86.97 E-value=0.35 Score=42.63 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHH
Q 045786 325 LVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIR 404 (453)
Q Consensus 325 L~~qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~ 404 (453)
+...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.+ +-+ .+. ..++.+...-.
T Consensus 28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~f------Dea----av~---al~~~~~~~~~ 90 (138)
T 3oeo_A 28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTF------DKV----KAE---AQIAKMEEQRK 90 (138)
T ss_dssp --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSC------CHH----HHH---HHHGGGSHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC------CHH----HHH---HHHHHHHHHHH
Confidence 34566 69999999999998877654221 111222334443432211 111 111 22233333444
Q ss_pred HHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 045786 405 QADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLR 441 (453)
Q Consensus 405 qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RLR 441 (453)
+.--.|.++..+|..||||-|-+.|---+.+-..+++
T Consensus 91 e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 91 ANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 4555788899999999999999998766655444443
No 14
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=85.88 E-value=1.8 Score=36.26 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=29.2
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR 199 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr 199 (453)
.=|-.||=-+||-+|..+|-||-.-+..||.-.
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~ 57 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEK 57 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999843
No 15
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=81.07 E-value=1.6 Score=37.29 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCChhchhhHHHHHHHHHHHHHHHHHHHhHH
Q 045786 331 PLTEQQLVGIGNLQQSSQQAEDALS-QGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNL 409 (453)
Q Consensus 331 pLTeqQL~~I~~LqqstqqaEdALS-qgMa~LQqsLAD~la~g~lg~~g~g~va~~m~qma~Am~KL~~Le~fl~qAD~L 409 (453)
+||++|...|..|....+.+-.... ...+ .+-+.+.++.+ |-+ .......+| ...-.+.--.
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~F------DEa-aar~l~~~~------~~~~~e~~v~ 79 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTF------DKA-KAEAQIAKM------EEQRKANMLA 79 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSC------CHH-HHHHHHHHT------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCC------CHH-HHHHHHHHH------HHHHHHHHHH
Confidence 6999999999999887766533222 1122 23333433322 211 011111111 1112222235
Q ss_pred HHHHHHHHHHhcChHHHHHHH
Q 045786 410 RQQTLQQMHRILTTRQSARAL 430 (453)
Q Consensus 410 R~qTL~qm~~ILTprQAArfL 430 (453)
|.++=++|..||||-|-+.|-
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 677888999999999998864
No 16
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=79.34 E-value=17 Score=33.40 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 045786 330 EPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSS 371 (453)
Q Consensus 330 epLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~ 371 (453)
-+||++|..+|..|+++-+.+-.+|.+.|...++.|-+.+..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999888877653
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=74.67 E-value=1.4 Score=37.07 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=23.8
Q ss_pred cHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 045786 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLE 196 (453)
Q Consensus 167 ~~k~~rrLaqNREaArksRlRkKaYvqqLE 196 (453)
.-+-.||=..||.||+++|.||..-+..||
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 446678889999999999999987665544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=59.77 E-value=0.51 Score=41.25 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcceeec
Q 045786 191 YVQQLESSRLKLTQLEQELQRARQQGIFIS 220 (453)
Q Consensus 191 YvqqLE~sr~kL~qleqel~rar~Qg~~~~ 220 (453)
-|+|||.||.+|+++=.+|++.|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999987764
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.76 E-value=68 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=34.7
Q ss_pred cCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 045786 329 LEPLTEQQ-----LVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGS 373 (453)
Q Consensus 329 LepLTeqQ-----L~~I~~LqqstqqaEdALSqgMa~LQqsLAD~la~g~ 373 (453)
...|.++| ..+|+.|++.+.++.++ .+||.+++....+.+..|+
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~GD 56 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMGD 56 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGCC
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCC
Confidence 34677777 35788999998888888 7899999998888887543
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.70 E-value=7 Score=29.59 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045786 188 KKAYVQQLESSRLKLTQLEQELQRAR 213 (453)
Q Consensus 188 kKaYvqqLE~sr~kL~qleqel~rar 213 (453)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999888654
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.68 E-value=10 Score=28.39 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045786 188 KKAYVQQLESSRLKLTQLEQELQRARQ 214 (453)
Q Consensus 188 kKaYvqqLE~sr~kL~qleqel~rar~ 214 (453)
++.||++||. ++.+||+.|...+.
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3579999999 99999999987654
No 22
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.50 E-value=24 Score=25.65 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045786 188 KKAYVQQLESSRLKLTQLEQELQRARQ 214 (453)
Q Consensus 188 kKaYvqqLE~sr~kL~qleqel~rar~ 214 (453)
-|-|||.||.--..|..|..-|.-|+.
T Consensus 8 lknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 478999999988888888877776653
No 23
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=46.18 E-value=9.3 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 183 KSRLRKKAYVQQLESSRLKLTQLEQELQRA 212 (453)
Q Consensus 183 ksRlRkKaYvqqLE~sr~kL~qleqel~ra 212 (453)
+.++.++.||+.||. +|.+||..|+..
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 345567789999999 999999877654
No 24
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=44.08 E-value=4.6 Score=33.97 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHH
Q 045786 169 KTLRRLAQNREAARKSRLRKK 189 (453)
Q Consensus 169 k~~rrLaqNREaArksRlRkK 189 (453)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456888999999999999984
No 25
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=43.54 E-value=44 Score=25.84 Aligned_cols=24 Identities=50% Similarity=0.512 Sum_probs=17.0
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 045786 173 RLAQNREAARKSRLRKKAYVQQLESSR 199 (453)
Q Consensus 173 rLaqNREaArksRlRkKaYvqqLE~sr 199 (453)
+--.||-|+||+|.+=| ++||--|
T Consensus 5 kryknr~asrk~rakfk---n~lqh~r 28 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFK---QLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33579999999998854 5555443
No 26
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=40.39 E-value=88 Score=25.10 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 045786 190 AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQI 252 (453)
Q Consensus 190 aYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWleEq~r~l 252 (453)
.+..+|+. .|.+|+..++.-...|..-| ..+.+|...+.+|-....+..
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G-----------~A~~ay~~~~~~W~~~a~~l~ 73 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG-----------AAAAAYSQAHKEWMDAARELV 73 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 67788888 89999999998887665544 347999999999987666543
No 27
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=34.25 E-value=31 Score=27.63 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcceeec
Q 045786 193 QQLESSRLKLTQLEQELQRARQQGIFIS 220 (453)
Q Consensus 193 qqLE~sr~kL~qleqel~rar~Qg~~~~ 220 (453)
|.||.+|..+..||||+.+-|=-=||+.
T Consensus 33 qeLe~Ck~sIrrLE~evn~ErFrmIYLQ 60 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQERFRMIYLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6799999999999999988775555554
No 28
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=33.71 E-value=64 Score=25.98 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.3
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 175 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 210 (453)
Q Consensus 175 aqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~ 210 (453)
..|+.+|-..=-|||.|=++|+.--..+.+||+.+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666667788898999988889999998764
No 29
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=31.89 E-value=65 Score=31.09 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=28.5
Q ss_pred HhhHHHH-HHhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhcce
Q 045786 175 AQNREAA-RKSRLRKKAYVQQLESS------RLKLTQLEQELQRARQQGI 217 (453)
Q Consensus 175 aqNREaA-rksRlRkKaYvqqLE~s------r~kL~qleqel~rar~Qg~ 217 (453)
..|||.. ..+|-||+.-..++.-- -.||..|||||.||-..-+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 4677765 55666666555555321 1578999999999987543
No 30
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=29.94 E-value=4.3e+02 Score=26.33 Aligned_cols=179 Identities=17% Similarity=0.138 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhh
Q 045786 234 AMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWL 313 (453)
Q Consensus 234 a~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWI 313 (453)
+..|...|..=+.+....+..|..|...-.....|+.+.+-+++ +.+|.. +.-+ + .
T Consensus 182 ~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~-~GN~mN---------------~g~~----~----A 237 (411)
T 1ux5_A 182 ALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILA-VGNFMN---------------DTSK----Q----A 237 (411)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHS---------------CGGG----C----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HhCccc---------------CCCC----C----e
Confidence 44555556555666666666666666544444567777776662 333322 1111 1 3
Q ss_pred cCCCchHHHHHH---------------H-------hhcCCChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 314 GGFRSSELLKLL---------------V-------NQLEPLTEQ-------QLVGIGNLQQSSQQAEDALSQGMEALQQS 364 (453)
Q Consensus 314 GGfRPSellkLL---------------~-------~qLepLTeq-------QL~~I~~LqqstqqaEdALSqgMa~LQqs 364 (453)
-||+-+.|.||. . |.+.++.++ ....+.+|...+ .+|..++..++..
T Consensus 238 ~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv~~~~l~~d~----~~L~~~l~~v~~~ 313 (411)
T 1ux5_A 238 QGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDC----KDFSQSIVNVERS 313 (411)
T ss_dssp SCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred eEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHhCcccccccchhhhHHHHHCCCHHHHHHHH----HHHHHHHHHHHHH
Confidence 577776555533 1 333333222 122334444443 4577777788777
Q ss_pred HhhhhhcCCCCCCCCCChhchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH
Q 045786 365 LAETLSSGSLGSSGSGNVANYM-GQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILT-TRQSARALLAIHDYFSRL 440 (453)
Q Consensus 365 LAD~la~g~lg~~g~g~va~~m-~qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILT-prQAArfLlAl~ey~~RL 440 (453)
+.....+..-.......+...| .-+..|-.++..|...+.++...-..++.-...=-+ ..+--+|+--+.+|...+
T Consensus 314 l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f 391 (411)
T 1ux5_A 314 VEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEY 391 (411)
T ss_dssp HHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6432111100000011111111 224566677788888888777766666554433222 345566766666665444
No 31
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.90 E-value=40 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045786 189 KAYVQQLESSRLKLTQLEQELQRAR 213 (453)
Q Consensus 189 KaYvqqLE~sr~kL~qleqel~rar 213 (453)
+.||+.||. +|.+||..|+...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 469999999 9999999998754
No 32
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.82 E-value=35 Score=26.39 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045786 188 KKAYVQQLESSRLKLTQLEQELQRAR 213 (453)
Q Consensus 188 kKaYvqqLE~sr~kL~qleqel~rar 213 (453)
++.||+.||. ++.+||..|+...
T Consensus 43 ~~~~~~~L~~---r~~~le~~l~~l~ 65 (89)
T 3coq_A 43 TRAHLTEVES---RLERLEQLFLLIF 65 (89)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHc
Confidence 3569999999 9999999998754
No 33
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.88 E-value=36 Score=26.84 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045786 190 AYVQQLESSRLKLTQLEQELQRARQQG 216 (453)
Q Consensus 190 aYvqqLE~sr~kL~qleqel~rar~Qg 216 (453)
.||+.|+. ++..|++|++..++|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 59999998 8888888888877763
No 34
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=22.54 E-value=6.4e+02 Score=25.85 Aligned_cols=177 Identities=14% Similarity=0.268 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhh
Q 045786 234 AMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWL 313 (453)
Q Consensus 234 a~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWI 313 (453)
+..|...|..=+.+....+..|..|...-.....|+.+++-|++ +.+|...- .+. -.
T Consensus 181 ~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~-~GN~mN~g---~rg-------------------~A 237 (483)
T 2j1d_G 181 SLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLA-FGNYMNKG---QRG-------------------NA 237 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHSCS---SSC-------------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HhhhhccC---CCC-------------------Cc
Confidence 67777778777777777788787776543334567777776662 33333211 000 01
Q ss_pred cCCCchH----------------HHHHHH-------hhc-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 314 GGFRSSE----------------LLKLLV-------NQL-------EPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQ 363 (453)
Q Consensus 314 GGfRPSe----------------llkLL~-------~qL-------epLTeqQL~~I~~LqqstqqaEdALSqgMa~LQq 363 (453)
-||+-+. |+|.|. |.+ ..+.......+.+|...+. .|..++..++.
T Consensus 238 ~GFkL~sL~KL~d~Ks~~d~k~TLLhylv~~v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~----~L~~~l~~v~~ 313 (483)
T 2j1d_G 238 YGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEIS----TLRSGLKAVET 313 (483)
T ss_dssp SCCCGGGGGGGGGSBCSSCTTCBHHHHHHHHHHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHH----HHHHHHHHHHH
T ss_pred eeeehHHHHhhhhcccCCCCCccHHHHHHHHHHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHH----HHHHHHHHHHH
Confidence 3454443 344332 222 2233333334455554444 45666666666
Q ss_pred HHhhhhhcCCCCCCCCCChhchhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q 045786 364 SLAETLSSGSLGSSGSGNVANYMG-QMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRL 440 (453)
Q Consensus 364 sLAD~la~g~lg~~g~g~va~~m~-qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RL 440 (453)
.+...-... ... .......|. =+..|-.++..|+..+..+...-..++.-.-.=-+..+.-+|+--+.+|...+
T Consensus 314 ~l~~~~~~~--~~~-~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f 388 (483)
T 2j1d_G 314 ELEYQKSQP--PQP-GDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388 (483)
T ss_dssp HHHHHHTSC--CCT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccC--CCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 554432111 110 111111222 24567788888888888888877777665533222233456666666664443
No 35
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=22.52 E-value=23 Score=35.95 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.0
Q ss_pred HhhHHHHHHhhhhHH
Q 045786 175 AQNREAARKSRLRKK 189 (453)
Q Consensus 175 aqNREaArksRlRkK 189 (453)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 478999999998876
No 36
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=21.06 E-value=6.8e+02 Score=25.63 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhh
Q 045786 233 GAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMW 312 (453)
Q Consensus 233 ga~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLW 312 (453)
.+..|...|..=+.+....+.-|..|...-.....|+.+++-|+ .+.+|...-+... -
T Consensus 169 ~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL-~~GN~mN~g~~~g---------------------~ 226 (457)
T 3obv_E 169 NAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNA---------------------G 226 (457)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTTSTTC---------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHhhhhccCCcCC---------------------C
Confidence 36677777777777777778788777655444456777776666 2333333211000 1
Q ss_pred hcCCCchHHHHHH---------------H-------hh-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 313 LGGFRSSELLKLL---------------V-------NQ-------LEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQ 363 (453)
Q Consensus 313 IGGfRPSellkLL---------------~-------~q-------LepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQq 363 (453)
.-||+-+.|.||. . |. |.++.......+.+|+..+.+ |..++..++.
T Consensus 227 A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~----L~~~l~~v~~ 302 (457)
T 3obv_E 227 AFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQ----MKKQIADVER 302 (457)
T ss_dssp CSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHH----HHHHHHHHHH
T ss_pred eeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHHHHHHHH----HHHHHHHHHH
Confidence 2466666555543 1 22 223333333444555554443 4556666665
Q ss_pred HHhhhhhcCCCCCCCCCChhchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 045786 364 SLAETLSSGSLGSSGSGNVANYM-GQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFS 438 (453)
Q Consensus 364 sLAD~la~g~lg~~g~g~va~~m-~qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~ 438 (453)
.+..... ...........| .=+..|-.++..|+.....+..+-..++.-...=-...+.-+|+--+.+|..
T Consensus 303 ~l~~~~~----~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~ 374 (457)
T 3obv_E 303 DVQNFPA----ATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRN 374 (457)
T ss_dssp HHHSCCC----CSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 5432211 000011111111 1245566777788888877776655555444221111233456665555543
Done!