Query 045786
Match_columns 453
No_of_seqs 185 out of 248
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 52.2 4.1 0.0003 31.2 2.7 20 170-189 49-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 42.3 5.3 0.00038 29.9 1.8 29 192-220 32-60 (67)
3 d1v9da_ a.207.1.1 (A:) Diaphan 40.2 1.2E+02 0.0089 26.9 11.9 179 233-441 93-301 (332)
4 d1wa8a1 a.25.3.1 (A:1-99) ESAT 24.7 1.2E+02 0.0087 22.0 9.8 69 165-259 4-75 (99)
5 d1uklc_ a.38.1.1 (C:) SREBP-2 22.4 31 0.0023 24.2 3.1 22 190-214 33-54 (61)
6 d1uuja_ a.221.1.1 (A:) Lissenc 20.0 34 0.0025 25.9 3.0 19 420-438 1-19 (76)
7 d1b33n_ d.30.1.1 (N:) Allophyc 19.3 27 0.002 25.7 2.2 14 240-253 32-45 (67)
8 d2c35a1 a.60.8.2 (A:14-142) RN 18.8 27 0.0019 28.1 2.3 77 265-343 41-120 (129)
9 d1zbdb_ g.50.1.1 (B:) Effector 18.3 66 0.0048 25.2 4.7 39 330-368 1-39 (124)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 17.2 1.3E+02 0.0092 24.1 6.3 35 328-362 81-115 (129)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=52.22 E-value=4.1 Score=31.15 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.6
Q ss_pred HHHHHHhhHHHHHHhhhhHH
Q 045786 170 TLRRLAQNREAARKSRLRKK 189 (453)
Q Consensus 170 ~~rrLaqNREaArksRlRkK 189 (453)
-.||=..|+-||+++|.||-
T Consensus 49 DIRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 49 KIRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhhh
Confidence 35888999999999999974
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.28 E-value=5.3 Score=29.89 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceeec
Q 045786 192 VQQLESSRLKLTQLEQELQRARQQGIFIS 220 (453)
Q Consensus 192 vqqLE~sr~kL~qleqel~rar~Qg~~~~ 220 (453)
-|+||.++..+..|||||.+-|=.-||+.
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYLQ 60 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYLQ 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999987765555553
No 3
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.23 E-value=1.2e+02 Score=26.94 Aligned_cols=179 Identities=13% Similarity=0.171 Sum_probs=89.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhh
Q 045786 233 GAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMW 312 (453)
Q Consensus 233 ga~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLW 312 (453)
.+..|...|..=+++....+..+.+|...-.....|+.+..-++ .+.+|...-+.-..
T Consensus 93 ~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL-~~GN~mN~g~~~g~--------------------- 150 (332)
T d1v9da_ 93 NAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNAG--------------------- 150 (332)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHH-Hhcchhcccccccc---------------------
Confidence 36777777777777777777777777655444456776665555 23333331111111
Q ss_pred hcCCCchHHHH---------------HHHh--------------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 313 LGGFRSSELLK---------------LLVN--------------QLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQ 363 (453)
Q Consensus 313 IGGfRPSellk---------------LL~~--------------qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQq 363 (453)
.-||+-+.|.| .|.. .|.++.......+.+|...+. .|..++..++.
T Consensus 151 A~GFkL~sL~kL~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~~----~l~~~l~~~~~ 226 (332)
T d1v9da_ 151 AFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLD----QMKKQIADVER 226 (332)
T ss_dssp ------CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHHH----HHHHHHHHHHH
T ss_pred ccccCHHHHHhHhhccCCCCCccHHHHHHHHHHHhCchhccchhhhhhHHHHhcCCHHHHHHHHH----HHHHHHHHHHH
Confidence 24555444444 3321 222333333344455544443 35556666666
Q ss_pred HHhhhhhcCCCCCCCCCChhchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 045786 364 SLAETLSSGSLGSSGSGNVANYM-GQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLR 441 (453)
Q Consensus 364 sLAD~la~g~lg~~g~g~va~~m-~qma~Am~KL~~Le~fl~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~RLR 441 (453)
.+....... .. .......| .=+..|..++..|...+.+++..-.+++.-.-+--+..+..+|+--+.+|...+.
T Consensus 227 ~l~~~~~~~--~~--~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 227 DVQNFPAAT--DE--KDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHHTCCCCS--SS--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccc--cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 554322110 00 11111112 2356777888999999999998877777766544444566788877777765543
No 4
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.74 E-value=1.2e+02 Score=21.98 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=45.2
Q ss_pred hhcHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHH
Q 045786 165 KLDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARW 244 (453)
Q Consensus 165 ~~~~k~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar~Qg~~~~~~~~~~~~~~~~ga~~F~~eY~rW 244 (453)
|.|+-.+++.|.+=+ .....|+. .|..|++.+..... -..| .++.+|...|..|
T Consensus 4 kvd~~~l~~~A~~~~----------~~~~~l~~---~l~~l~~~v~~l~~--~W~G-----------~A~~af~~~~~~w 57 (99)
T d1wa8a1 4 KTDAATLAQEAGNFE----------RISGDLKT---QIDQVESTAGSLQG--QWRG-----------AAGTAAQAAVVRF 57 (99)
T ss_dssp SSCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHT--SCCS-----------SHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHH--Hhhh-----------hHHHHHHHHHHHH
Confidence 567888888886432 34456666 77777777765532 2332 3579999999999
Q ss_pred HHHHHHHHH---HHHHHh
Q 045786 245 LEEQNKQIN---ELRSAV 259 (453)
Q Consensus 245 leEq~r~l~---ELR~AL 259 (453)
-..-.+... ++...|
T Consensus 58 ~~~~~~l~~~L~~i~~~L 75 (99)
T d1wa8a1 58 QEAANKQKQELDEISTNI 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887766544 444445
No 5
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40 E-value=31 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 045786 190 AYVQQLESSRLKLTQLEQELQRARQ 214 (453)
Q Consensus 190 aYvqqLE~sr~kL~qleqel~rar~ 214 (453)
.||+.|+. +...|++|...-|.
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 69999999 66666777665443
No 6
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.00 E-value=34 Score=25.85 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=17.2
Q ss_pred hcChHHHHHHHHHHHHHHH
Q 045786 420 ILTTRQSARALLAIHDYFS 438 (453)
Q Consensus 420 ILTprQAArfLlAl~ey~~ 438 (453)
|||+||+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999975
No 7
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.26 E-value=27 Score=25.68 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 045786 240 EYARWLEEQNKQIN 253 (453)
Q Consensus 240 eY~rWleEq~r~l~ 253 (453)
-|+.|+.||+|.+.
T Consensus 32 py~nWf~EQQrI~K 45 (67)
T d1b33n_ 32 PYENWFREQQRIQK 45 (67)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 37899999998764
No 8
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.77 E-value=27 Score=28.09 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhhcCCCchHH--HHHHHhhcC-CChHHHHHHHH
Q 045786 265 DTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSEL--LKLLVNQLE-PLTEQQLVGIG 341 (453)
Q Consensus 265 D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWIGGfRPSel--lkLL~~qLe-pLTeqQL~~I~ 341 (453)
+.+|..+..+.+.|-...-+.+..-+...|..+++..=.++.|.+ =|+..+|+.+ ++.|.+.++ .+|++++..|=
T Consensus 41 ~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~iL 118 (129)
T d2c35a1 41 EQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQIL 118 (129)
T ss_dssp SCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHHH
Confidence 456777888888765544344556667778888877778888887 4578888764 456678885 68999988774
Q ss_pred HH
Q 045786 342 NL 343 (453)
Q Consensus 342 ~L 343 (453)
+.
T Consensus 119 d~ 120 (129)
T d2c35a1 119 DD 120 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.31 E-value=66 Score=25.21 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045786 330 EPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAET 368 (453)
Q Consensus 330 epLTeqQL~~I~~LqqstqqaEdALSqgMa~LQqsLAD~ 368 (453)
++||+++...|.+.-++-...|..-.+.+.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578998888887777777777777778888888877664
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.21 E-value=1.3e+02 Score=24.13 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=27.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045786 328 QLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQ 362 (453)
Q Consensus 328 qLepLTeqQL~~I~~LqqstqqaEdALSqgMa~LQ 362 (453)
.++.-.+.|+.+|..|+.+.+.+|..+.+.+.+..
T Consensus 81 ~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445578999999999999999998877766543
Done!