BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045788
MSQVADFFVLVVPERVRVAVRLWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDT
YEFDEVFTEFVSQKRVYEVVAKPVVEQQQQQQQWQRSWRRGKIKWPISLLV

High Scoring Gene Products

Symbol, full name Information P value
ARK2
AT1G01950 		protein from Arabidopsis thaliana 4.1e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045788
        (111 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025497 - symbol:ARK2 "armadillo repeat kinesi...   278  4.1e-23   1


>TAIR|locus:2025497 [details] [associations]
            symbol:ARK2 "armadillo repeat kinesin 2" species:3702
            "Arabidopsis thaliana" [GO:0003777 "microtubule motor activity"
            evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0007018 "microtubule-based movement" evidence=IEA] [GO:0048364
            "root development" evidence=IMP] InterPro:IPR000225
            InterPro:IPR001752 InterPro:IPR016024 InterPro:IPR019821
            Pfam:PF00225 Pfam:PF00514 PRINTS:PR00380 PROSITE:PS00411
            PROSITE:PS50067 PROSITE:PS50176 SMART:SM00129 SMART:SM00185
            EMBL:CP002684 GO:GO:0005524 GO:GO:0005875 SUPFAM:SSF48371
            Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048364 GO:GO:0005874
            GO:GO:0003777 GO:GO:0007018 Gene3D:3.40.850.10 UniGene:At.17002
            UniGene:At.66839 IPI:IPI00938676 RefSeq:NP_001154301.1
            ProteinModelPortal:F4HU83 SMR:F4HU83 PRIDE:F4HU83
            EnsemblPlants:AT1G01950.3 GeneID:839306 KEGG:ath:AT1G01950
            OMA:IMVRSME Uniprot:F4HU83
        Length = 915

 Score = 278 (102.9 bits), Expect = 4.1e-23, P = 4.1e-23
 Identities = 54/65 (83%), Positives = 59/65 (90%)

Query:    22 LWPRNAEETVVDADFADCVELQIELKRLKLRKNNWNSDTYEFDEVFTEFVSQKRVYEVVA 81
             L PRNA+E+V DADFADCVELQ ELKRLKLRKNNW+++TYEFDEV TE  SQKRVYEVVA
Sbjct:    67 LRPRNADESVADADFADCVELQPELKRLKLRKNNWDTETYEFDEVLTEAASQKRVYEVVA 126

Query:    82 KPVVE 86
             KPVVE
Sbjct:   127 KPVVE 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111        89   0.00091  102 3  11 22  0.45    29
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  126 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.65u 0.19s 9.84t   Elapsed:  00:00:00
  Total cpu time:  9.65u 0.19s 9.84t   Elapsed:  00:00:00
  Start:  Fri May 10 05:32:46 2013   End:  Fri May 10 05:32:46 2013

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